Query 009667
Match_columns 529
No_of_seqs 405 out of 1854
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 15:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 2.1E-44 4.5E-49 339.0 20.9 166 77-245 12-185 (186)
2 PRK04143 hypothetical protein; 100.0 7.8E-42 1.7E-46 337.8 20.3 169 81-250 81-261 (264)
3 cd02905 Macro_GDAP2_like Macro 100.0 1.7E-41 3.6E-46 307.5 17.1 138 84-221 2-140 (140)
4 cd02907 Macro_Af1521_BAL_like 100.0 2.1E-40 4.5E-45 312.7 21.1 170 82-251 1-175 (175)
5 cd02908 Macro_Appr_pase_like M 100.0 1.7E-40 3.6E-45 310.4 20.1 163 84-248 1-164 (165)
6 PRK00431 RNase III inhibitor; 100.0 2E-38 4.4E-43 299.8 20.1 167 81-249 1-172 (177)
7 cd02906 Macro_1 Macro domain, 100.0 1.1E-36 2.3E-41 278.8 15.6 135 84-218 1-147 (147)
8 COG2110 Predicted phosphatase 100.0 1E-35 2.2E-40 277.3 17.2 166 83-251 3-175 (179)
9 cd02903 Macro_BAL_like Macro d 100.0 2.5E-35 5.5E-40 267.0 16.7 134 83-220 1-137 (137)
10 KOG2633 Hismacro and SEC14 dom 100.0 8.6E-35 1.9E-39 271.7 15.0 179 70-257 20-199 (200)
11 cd03330 Macro_2 Macro domain, 100.0 3.9E-31 8.5E-36 238.5 16.4 131 84-217 1-132 (133)
12 cd02900 Macro_Appr_pase Macro 99.9 1.7E-26 3.7E-31 218.1 16.0 138 83-221 29-186 (186)
13 cd02749 Macro Macro domain, a 99.9 6.3E-26 1.4E-30 207.6 15.9 134 84-217 1-146 (147)
14 smart00506 A1pp Appr-1"-p proc 99.9 5.7E-26 1.2E-30 204.2 15.1 129 84-213 1-133 (133)
15 PRK13341 recombination factor 99.9 1.5E-27 3.2E-32 267.1 -1.4 174 76-253 468-707 (725)
16 PF01661 Macro: Macro domain; 99.9 6.6E-25 1.4E-29 192.9 11.7 113 101-213 1-118 (118)
17 PF13716 CRAL_TRIO_2: Divergen 99.9 3.5E-23 7.7E-28 189.9 8.1 132 396-528 2-136 (149)
18 smart00516 SEC14 Domain in hom 99.8 7.4E-21 1.6E-25 175.1 13.0 126 402-528 14-149 (158)
19 cd02901 Macro_Poa1p_like Macro 99.8 8.1E-20 1.8E-24 166.1 12.7 133 84-219 1-139 (140)
20 cd00170 SEC14 Sec14p-like lipi 99.8 1.4E-19 3.1E-24 164.8 12.0 133 396-528 9-150 (157)
21 KOG1470 Phosphatidylinositol t 99.8 3.6E-19 7.8E-24 178.8 14.5 139 389-528 91-235 (324)
22 PF00650 CRAL_TRIO: CRAL/TRIO 99.8 3.2E-19 6.9E-24 164.4 7.9 138 391-528 2-152 (159)
23 KOG4406 CDC42 Rho GTPase-activ 99.8 1.2E-18 2.5E-23 176.9 11.3 142 388-529 70-216 (467)
24 PHA02595 tk.4 hypothetical pro 99.5 1.3E-13 2.9E-18 127.3 14.5 130 84-216 2-140 (154)
25 KOG1471 Phosphatidylinositol t 99.5 9.4E-14 2E-18 143.1 10.5 131 398-528 97-249 (317)
26 PF14519 Macro_2: Macro-like d 98.5 7.4E-07 1.6E-11 88.4 10.3 140 83-223 42-216 (280)
27 cd03331 Macro_Poa1p_like_SNF2 98.2 6E-05 1.3E-09 69.4 14.2 129 85-215 2-147 (152)
28 KOG1826 Ras GTPase activating 97.3 9.2E-05 2E-09 87.4 2.1 150 378-528 1541-1695(2724)
29 TIGR02452 conserved hypothetic 97.2 0.0024 5.2E-08 64.0 9.9 86 153-239 164-255 (266)
30 PF10154 DUF2362: Uncharacteri 96.0 0.045 9.7E-07 59.5 10.5 118 135-253 372-503 (510)
31 COG4295 Uncharacterized protei 95.7 0.062 1.3E-06 51.5 8.8 82 168-250 197-280 (285)
32 PF03641 Lysine_decarbox: Poss 40.1 67 0.0015 28.6 5.5 63 461-523 64-133 (133)
33 PHA00684 hypothetical protein 38.5 73 0.0016 28.3 5.2 46 170-215 55-100 (128)
34 PF11964 SpoIIAA-like: SpoIIAA 33.6 1.7E+02 0.0038 24.2 6.9 88 422-518 10-102 (109)
35 PF01073 3Beta_HSD: 3-beta hyd 33.2 87 0.0019 31.6 5.8 46 150-195 67-114 (280)
36 KOG1826 Ras GTPase activating 30.6 1.1E+02 0.0023 38.9 6.5 125 360-487 1668-1803(2724)
37 cd06155 eu_AANH_C_1 A group of 27.1 1.4E+02 0.0031 25.0 5.2 49 205-253 23-74 (101)
38 KOG1502 Flavonol reductase/cin 27.0 1.1E+02 0.0024 31.8 5.3 14 150-163 79-92 (327)
39 PLN02214 cinnamoyl-CoA reducta 22.8 1.7E+02 0.0037 30.2 5.8 44 150-195 82-125 (342)
40 COG2388 Predicted acetyltransf 22.2 1.1E+02 0.0023 26.2 3.4 41 151-196 40-80 (99)
41 cd05130 RasGAP_Neurofibromin N 22.1 37 0.0008 35.4 0.7 30 326-366 300-329 (329)
42 PF01042 Ribonuc_L-PSP: Endori 21.5 3.1E+02 0.0067 23.6 6.4 52 204-255 39-93 (121)
43 PLN02725 GDP-4-keto-6-deoxyman 21.5 1.6E+02 0.0034 29.3 5.1 46 149-194 49-98 (306)
44 PRK15181 Vi polysaccharide bio 21.4 1.2E+02 0.0026 31.3 4.5 53 150-203 91-146 (348)
45 TIGR00730 conserved hypothetic 21.1 1E+02 0.0022 29.1 3.4 46 478-523 125-175 (178)
46 cd08586 PI-PLCc_BcPLC_like Cat 20.4 1E+02 0.0022 31.3 3.5 71 210-281 75-147 (279)
47 PHA03033 hypothetical protein; 20.2 4.1E+02 0.0088 23.8 6.5 72 84-161 2-79 (142)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=2.1e-44 Score=339.02 Aligned_cols=166 Identities=23% Similarity=0.390 Sum_probs=154.3
Q ss_pred cccCCCCEEEEEEcCC--ccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeccCCCC
Q 009667 77 VDHEINSKIYLWRGNP--WNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLP 149 (529)
Q Consensus 77 ~~~~~n~~I~i~~GDI--~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~~~L~ 149 (529)
.....|.+|.||+||| |++++|||||+||++|.+++| ++||+++||++|++||+++ ++|++|++++|+||+||
T Consensus 12 ~~~~~~~~i~i~~gDI~~t~~~vDaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~~Lp 91 (186)
T cd02904 12 KSLFLGQKLSLVQSDISIGSIDVEGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAHGLP 91 (186)
T ss_pred hhhcCCCEEEEEECCccccceeccEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCCCCC
Confidence 4455789999999999 999999999999999998876 6999999999999999865 78999999999999999
Q ss_pred CCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCc
Q 009667 150 ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKI 228 (529)
Q Consensus 150 ~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~-~~i 228 (529)
||||||||||.|+.+ ..++.|++||++||++|++++++|||||+||||++|||++++|++|+++|++|+++++ +++
T Consensus 92 ~k~VIHtVgP~~~~~---~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~l 168 (186)
T cd02904 92 AKFVIHCHSPQWGSD---KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSSI 168 (186)
T ss_pred CCEEEEeCCCCCCCC---chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999654 2468999999999999999999999999999999999999999999999999999874 679
Q ss_pred cEEEEEecCchhHHHHH
Q 009667 229 SAVVFCTTTASDTEIYK 245 (529)
Q Consensus 229 ~~V~fv~~~~~~~~~y~ 245 (529)
++|+||+++++++++|.
T Consensus 169 ~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 169 KQIYFVLFDSESIGIYV 185 (186)
T ss_pred cEEEEEECCHHHHHHhh
Confidence 99999999999999985
No 2
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=7.8e-42 Score=337.81 Aligned_cols=169 Identities=41% Similarity=0.648 Sum_probs=155.1
Q ss_pred CCCEEEEEEcCCccccccEEEEcCCcCCCCC-----Cc-hHHHHHhhChhHHHHHHHh-----CCCCCCCEEEeccCCCC
Q 009667 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEA-----HS-SPGLHAAAGPGLAEECATL-----GGCRTGMAKVTNAYDLP 149 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~-----~g-~~aI~~~aG~~l~~e~~~~-----~~~~~G~~~vT~~~~L~ 149 (529)
.+.+|.||+||||++++|||||+||+.|.++ || +++||++||++|++||+++ ..+++|++++|+||+||
T Consensus 81 ~~~~i~i~~GDIt~l~vDAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~iT~~~nLp 160 (264)
T PRK04143 81 KYDNIFLWQGDITRLKVDAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRAYNLP 160 (264)
T ss_pred CCCEEEEEECCcceeecCEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEEecCCCCC
Confidence 4789999999999999999999999999743 33 6899999999999999876 36899999999999999
Q ss_pred CCeEEEEcCCCcCC-cchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCc
Q 009667 150 ARRVIHTVGPKYAV-KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKI 228 (529)
Q Consensus 150 ~k~IIH~VgP~~~~-~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i 228 (529)
|+||||||||.|+. .......+.|++||++||++|.+++++|||||+||||++|||++.||++|++++++|++++++.
T Consensus 161 ~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~- 239 (264)
T PRK04143 161 AKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSK- 239 (264)
T ss_pred CCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCC-
Confidence 99999999999987 3444567899999999999999999999999999999999999999999999999999998765
Q ss_pred cEEEEEecCchhHHHHHHHccc
Q 009667 229 SAVVFCTTTASDTEIYKRLLPL 250 (529)
Q Consensus 229 ~~V~fv~~~~~~~~~y~~~l~~ 250 (529)
.+|+|++++++++++|+++|..
T Consensus 240 ~~Vif~vf~~~d~~iy~~~l~~ 261 (264)
T PRK04143 240 LKVVFNVFTDEDLELYQKALNK 261 (264)
T ss_pred CEEEEEEcCHHHHHHHHHHHHH
Confidence 7899999999999999998864
No 3
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=1.7e-41 Score=307.50 Aligned_cols=138 Identities=61% Similarity=0.948 Sum_probs=133.4
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCCCcC
Q 009667 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (529)
+|.||+|||+++++|||||++|++|.+++| +++|+++||++|++||++++++++|++++|+||+||||||||+|||+|+
T Consensus 2 ki~l~~GdIt~~~vDaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~~~~~G~~~~T~~~~L~~k~VIH~vgP~~~ 81 (140)
T cd02905 2 RIVLWEGDICNLNVDAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLGGCRTGEAKLTKGYNLPARFIIHTVGPKYN 81 (140)
T ss_pred eEEEEeCccCcccCCEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCcEEEecCCCCCccEEEEecCCccC
Confidence 689999999999999999999999987765 6999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHH
Q 009667 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (529)
Q Consensus 163 ~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl 221 (529)
.++.+++++.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++||
T Consensus 82 ~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 82 VKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 98888888999999999999999999999999999999999999999999999999995
No 4
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=2.1e-40 Score=312.71 Aligned_cols=170 Identities=26% Similarity=0.426 Sum_probs=160.4
Q ss_pred CCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeccCCCCCCeEEEE
Q 009667 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHT 156 (529)
Q Consensus 82 n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH~ 156 (529)
|.+|+||+|||+++++|||||++|+++.+++| +++|+++||+++++||+++ +++++|++++|++|+|+||+|||+
T Consensus 1 ~~~i~i~~GdI~~~~~DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~~~~L~~k~IiH~ 80 (175)
T cd02907 1 GVTLSVIKGDITRFPVDAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTSAGKLPCKYVIHA 80 (175)
T ss_pred CcEEEEEECCcceeecCEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCCCEEEEe
Confidence 57899999999999999999999999998776 6899999999999999764 899999999999999999999999
Q ss_pred cCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEec
Q 009667 157 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 236 (529)
Q Consensus 157 VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~ 236 (529)
|+|.|+.+......+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|++++++.+++|+||++
T Consensus 81 v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~ 160 (175)
T cd02907 81 VGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDY 160 (175)
T ss_pred CCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEEC
Confidence 99999988766678899999999999999999999999999999999999999999999999999998778999999999
Q ss_pred CchhHHHHHHHcccc
Q 009667 237 TASDTEIYKRLLPLY 251 (529)
Q Consensus 237 ~~~~~~~y~~~l~~y 251 (529)
++.++++|++.|..|
T Consensus 161 ~~~~~~~~~~al~~~ 175 (175)
T cd02907 161 DEQTVEAFEKALEVF 175 (175)
T ss_pred CHHHHHHHHHHHhhC
Confidence 999999999987654
No 5
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=1.7e-40 Score=310.37 Aligned_cols=163 Identities=45% Similarity=0.725 Sum_probs=154.4
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCCCcC
Q 009667 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (529)
+|+||+|||+++++|||||++|++|.++|| +++|+++||++|++||++++++++|++++|++|+|+|+||||+|||.|+
T Consensus 1 ~i~i~~GdI~~~~~daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~~~~~G~~v~T~~~~l~~~~IiH~v~P~~~ 80 (165)
T cd02908 1 KIEIIQGDITKLEVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRGCPTGEAVITSGYNLPAKYVIHTVGPVWR 80 (165)
T ss_pred CeEEEecccceeecCEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCCEEEeeCCCCCCCEEEEEcCCccc
Confidence 589999999999999999999999998876 6999999999999999999999999999999999999999999999998
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCchhHH
Q 009667 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (529)
Q Consensus 163 ~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~ 242 (529)
.+ .....+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+++ .+.+++|+||++++++++
T Consensus 81 ~~-~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~-~~~l~~V~~v~~~~~~~~ 158 (165)
T cd02908 81 GG-QHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEE-HDAIERVIFVCFSEEDYE 158 (165)
T ss_pred CC-CCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEeCCHHHHH
Confidence 76 3345789999999999999999999999999999999999999999999999999988 567999999999999999
Q ss_pred HHHHHc
Q 009667 243 IYKRLL 248 (529)
Q Consensus 243 ~y~~~l 248 (529)
+|+++|
T Consensus 159 ~f~~~l 164 (165)
T cd02908 159 IYEKAL 164 (165)
T ss_pred HHHHHh
Confidence 999876
No 6
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=2e-38 Score=299.75 Aligned_cols=167 Identities=40% Similarity=0.599 Sum_probs=156.6
Q ss_pred CCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeccCCCCCCeEEE
Q 009667 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIH 155 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH 155 (529)
++.+|+|++|||+++++|||||++|+++.+++| +++|++++|+++++||+++ +++++|++++|++|+|+|+||||
T Consensus 1 ~~~~i~i~~Gdi~~~~~daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~~~~l~~~~IiH 80 (177)
T PRK00431 1 MGMRIEVVQGDITELEVDAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPAKYVIH 80 (177)
T ss_pred CCcEEEEEeCCcccccCCEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCCCCCEEEE
Confidence 367999999999999999999999999998776 6999999999999999987 89999999999999999999999
Q ss_pred EcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEe
Q 009667 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235 (529)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~ 235 (529)
+|||.|+.+... ..+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+++. +.+++|+||+
T Consensus 81 ~v~P~~~~~~~~-~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~-~~l~~I~~v~ 158 (177)
T PRK00431 81 TVGPVWRGGEDN-EAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRH-KSPEEVYFVC 158 (177)
T ss_pred ecCCeecCCCCc-HHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcC-CCcCEEEEEE
Confidence 999999876554 57899999999999999999999999999999999999999999999999998655 5799999999
Q ss_pred cCchhHHHHHHHcc
Q 009667 236 TTASDTEIYKRLLP 249 (529)
Q Consensus 236 ~~~~~~~~y~~~l~ 249 (529)
++++++++|+++|.
T Consensus 159 ~~~~~~~~f~~~l~ 172 (177)
T PRK00431 159 YDEEAYRLYERLLT 172 (177)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999886
No 7
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=1.1e-36 Score=278.76 Aligned_cols=135 Identities=44% Similarity=0.722 Sum_probs=124.4
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCC-----Cc-hHHHHHhhChhHHHHHHHh----C-CCCCCCEEEeccCCCCCCe
Q 009667 84 KIYLWRGNPWNLEVDTVVNSTNENLDEA-----HS-SPGLHAAAGPGLAEECATL----G-GCRTGMAKVTNAYDLPARR 152 (529)
Q Consensus 84 ~I~i~~GDI~~~~~DaIVNsaN~~l~~~-----~g-~~aI~~~aG~~l~~e~~~~----~-~~~~G~~~vT~~~~L~~k~ 152 (529)
+|++|+|||+++++|||||++|++|.++ +| +++|+++||++|++||+++ + .+++|++++|++|+|||+|
T Consensus 1 ~i~v~~GdIt~~~~DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~~~~L~~k~ 80 (147)
T cd02906 1 SIYLWKGDITTLKVDAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPGYNLPAKY 80 (147)
T ss_pred CeEEEECCcCCccCCEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCE
Confidence 5889999999999999999999999743 44 6899999999999999875 3 6899999999999999999
Q ss_pred EEEEcCCCcCCcch-hhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHH
Q 009667 153 VIHTVGPKYAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 218 (529)
Q Consensus 153 IIH~VgP~~~~~~~-~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~ 218 (529)
|||||||+|+.++. ....+.|++||++||+.|.+++++|||||+||||++|||++++|++|+++||
T Consensus 81 VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 81 VIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred EEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 99999999988764 3457899999999999999999999999999999999999999999999985
No 8
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=1e-35 Score=277.26 Aligned_cols=166 Identities=36% Similarity=0.560 Sum_probs=152.6
Q ss_pred CEEEEEEcCCccccccEEEEcCCcCCCCCCch-HHHHHhhChhHHHHHHHhC----C--CCCCCEEEeccCCCCCCeEEE
Q 009667 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATLG----G--CRTGMAKVTNAYDLPARRVIH 155 (529)
Q Consensus 83 ~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~~----~--~~~G~~~vT~~~~L~~k~IIH 155 (529)
..|.+++||||++.+|||||+||+.|.+|||+ .||++++||+|++||+++. + +++|++++|++|+|+++||||
T Consensus 3 ~~i~~v~GDIt~~~~daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~~ViH 82 (179)
T COG2110 3 TNIRVVQGDITKLEADAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAKYVIH 82 (179)
T ss_pred ceEEEEecccceeehhheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCCEEEe
Confidence 57999999999999999999999999998875 8999999999999998753 3 667999999999999999999
Q ss_pred EcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEe
Q 009667 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCT 235 (529)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~ 235 (529)
+|||.|..+.+. ..+.|..||+++|++|++++++|||||+||||++|||++++|.++++++++|+.. ..+..|+|++
T Consensus 83 ~vgp~~~~g~~~-~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~--~~~~~v~~v~ 159 (179)
T COG2110 83 TVGPSWRGGSKD-EAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPE--ASIETVIFVV 159 (179)
T ss_pred cCCCcccCCChh-HHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhccc--ccccEEEEEe
Confidence 999999988443 3579999999999999999999999999999999999999999999999999976 4688999999
Q ss_pred cCchhHHHHHHHcccc
Q 009667 236 TTASDTEIYKRLLPLY 251 (529)
Q Consensus 236 ~~~~~~~~y~~~l~~y 251 (529)
++.++...|+.++...
T Consensus 160 ~~~e~~~~~~~~~~~~ 175 (179)
T COG2110 160 YGEETARVYEELLSTH 175 (179)
T ss_pred cCchhHHHHHHHHhhh
Confidence 9999999999887643
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=2.5e-35 Score=267.02 Aligned_cols=134 Identities=27% Similarity=0.332 Sum_probs=125.4
Q ss_pred CEEEEEEcCCccccccEEEEcCCcC-CCCCCc-hHHHHHhhChhHHHHHHHhCCCCC-CCEEEeccCCCCCCeEEEEcCC
Q 009667 83 SKIYLWRGNPWNLEVDTVVNSTNEN-LDEAHS-SPGLHAAAGPGLAEECATLGGCRT-GMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 83 ~~I~i~~GDI~~~~~DaIVNsaN~~-l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~-G~~~vT~~~~L~~k~IIH~VgP 159 (529)
.+|+|++|||+++++|||||++|++ +.+++| +++|++++|+++++||++++.++. |++++|++|+||||||||+++|
T Consensus 1 ~~i~i~~GdI~~~~~DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~~~p 80 (137)
T cd02903 1 LTLQVAKGDIEDETTDVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPCKYVYHVVLP 80 (137)
T ss_pred CEEEEEeCccCCccCCEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCCCEEEEecCC
Confidence 3699999999999999999999999 666655 689999999999999999988885 9999999999999999999999
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHH
Q 009667 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRF 220 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~f 220 (529)
+|..+ ..+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|
T Consensus 81 ~~~~~----~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 81 NWSNG----ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCCCc----hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 99865 4678999999999999999999999999999999999999999999999986
No 10
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.6e-35 Score=271.73 Aligned_cols=179 Identities=44% Similarity=0.674 Sum_probs=162.8
Q ss_pred CCCCCcccccCCCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCC
Q 009667 70 GMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDL 148 (529)
Q Consensus 70 ~~~~~f~~~~~~n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L 148 (529)
...++|+++...|.+|.+|+||++.+++|||| |..|++ ..+||++|||++.+||..+..|++|.+++|++++|
T Consensus 20 ~~l~~f~~~~~~~~~i~lwr~d~~~l~v~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~L 93 (200)
T KOG2633|consen 20 TSLEVFKIDKPDNGGISLWRGDGKTLEVDAVV------LLGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYGL 93 (200)
T ss_pred cccchhhccCccccCeeEeecccccccceeee------eccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCCC
Confidence 45678999999999999999999999999998 555554 69999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCc
Q 009667 149 PARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKI 228 (529)
Q Consensus 149 ~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i 228 (529)
|||+|||+|||.|...+.++.. .|+.||++||.+|.+++++|||||+|++|.+|||++.+|++.++++++|++++.+..
T Consensus 94 pak~vIHtvgP~~~~d~~~~~~-~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d~~ 172 (200)
T KOG2633|consen 94 PAKRVIHTVGPRWKEDKLQECY-FLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKDSS 172 (200)
T ss_pred ceeEEEEecCchhhccchHHHH-HHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCCce
Confidence 9999999999999998888766 899999999999999999999999999999999999999999999999999987543
Q ss_pred cEEEEEecCchhHHHHHHHccccCCCChh
Q 009667 229 SAVVFCTTTASDTEIYKRLLPLYFPRDKH 257 (529)
Q Consensus 229 ~~V~fv~~~~~~~~~y~~~l~~yfpr~~~ 257 (529)
+++|.+.+.|.+.|..+++.|||++..
T Consensus 173 --l~~~~f~~~d~e~~~~~l~~~~~~~~~ 199 (200)
T KOG2633|consen 173 --LKTVPFLDYDSESYGAYLPEYAPSDAK 199 (200)
T ss_pred --EEEEEEeccCCchHHHHHhhhcccccc
Confidence 555555567788899999999998754
No 11
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.97 E-value=3.9e-31 Score=238.52 Aligned_cols=131 Identities=25% Similarity=0.364 Sum_probs=122.4
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCCCcC
Q 009667 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (529)
.|++++|||+++++|||||++|+.+.+++| +++|++++|+++++||.+.+.+++|++++|.+++|+||+|||+++|.+.
T Consensus 1 ~i~i~~GdI~~~~~DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~~~~~G~~~~t~~~~l~~k~Iih~~~~~~~ 80 (133)
T cd03330 1 ELEVVQGDITKVDADAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKAPIPVGEAVITGAGDLPARYVIHAATMEEP 80 (133)
T ss_pred CEEEEEcccccccCCEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCCeEEEEeCCCCCCCEEEEeCCCCCC
Confidence 378999999999999999999999998876 6999999999999999999999999999999999999999999999865
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHH
Q 009667 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTV 217 (529)
Q Consensus 163 ~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v 217 (529)
. ....+.|++||++||+.|.+++++|||||+||||++|||++++|++|.++|
T Consensus 81 ~---~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 81 G---RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred C---CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 4 234578999999999999999999999999999999999999999999886
No 12
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.94 E-value=1.7e-26 Score=218.05 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=117.0
Q ss_pred CEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhC-hhHHHHHHHh------CCCCCCCEEEeccCCCC-----
Q 009667 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAG-PGLAEECATL------GGCRTGMAKVTNAYDLP----- 149 (529)
Q Consensus 83 ~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG-~~l~~e~~~~------~~~~~G~~~vT~~~~L~----- 149 (529)
..|..+.+|++..++||||||||+.+.+||| +.+|++++| ++|+++|++. +.|++|++++|.+++|+
T Consensus 29 ~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~~ 108 (186)
T cd02900 29 ETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKTI 108 (186)
T ss_pred eecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCcccccc
Confidence 3444455555555589999999999999887 589999999 6899999652 79999999999999999
Q ss_pred -----CCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHh--CCeeeeccccccCCCCCChHHHHHHHHHHHHHHH
Q 009667 150 -----ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIEN--GLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (529)
Q Consensus 150 -----~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~--~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl 221 (529)
++||||++++++..... ...+.|++||+++|+.|.++ +++|||||+||||.+|||++++|++|+.+++.|+
T Consensus 109 ~~~~~~~~iIHaPtm~~P~~~~-~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 109 YCRWGIPYLIHAPTMRVPSPVI-TGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred ccccCCCEEEEcCcccCCCCCC-CcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999998765541111 23468999999999999987 8999999999999999999999999999999884
No 13
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.94 E-value=6.3e-26 Score=207.55 Aligned_cols=134 Identities=34% Similarity=0.480 Sum_probs=124.2
Q ss_pred EEEEEEcCCcc-ccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCC---CCCCCEEEeccCCCC-CCeEEEEc
Q 009667 84 KIYLWRGNPWN-LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGG---CRTGMAKVTNAYDLP-ARRVIHTV 157 (529)
Q Consensus 84 ~I~i~~GDI~~-~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~---~~~G~~~vT~~~~L~-~k~IIH~V 157 (529)
+|++++|||++ .++|+|||++|+.+.+|+| +.+|++++|++++++|++... +++|++++|++++++ +++|||++
T Consensus 1 ~i~~~~GDi~~~~~~d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~~~~~~~~~vih~~ 80 (147)
T cd02749 1 KIKVVSGDITKPLGSDAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGAKYLIHIV 80 (147)
T ss_pred CEEEEECCCCCCCCCCEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcCCCCCcCCEEEEeC
Confidence 47899999999 9999999999999888776 689999999999999988643 589999999999999 99999999
Q ss_pred CCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCC------ChHHHHHHHHHHH
Q 009667 158 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNY------PREPAAHVAIRTV 217 (529)
Q Consensus 158 gP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~------p~~~~a~i~l~~v 217 (529)
+|+|..++..++.+.|++||++||..|.+++++|||||.||||.+|+ |++.++++|++++
T Consensus 81 ~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 81 GPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 99999876556678999999999999999999999999999999999 9999999999886
No 14
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.94 E-value=5.7e-26 Score=204.15 Aligned_cols=129 Identities=32% Similarity=0.473 Sum_probs=117.2
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhH-HHHHHHhC--CCCCCCEEEeccCCCCCCeEEEEcCC
Q 009667 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGL-AEECATLG--GCRTGMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 84 ~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l-~~e~~~~~--~~~~G~~~vT~~~~L~~k~IIH~VgP 159 (529)
.|++++|||+.+++|||||++|+++.+++| +++|++++|+++ ++++++.. .+++|++++|+++++++++|||+++|
T Consensus 1 ~i~~~~Gdi~~~~~d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Iih~~~p 80 (133)
T smart00506 1 ILKVVKGDITKPRADAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEGGNLPAKYVIHAVGP 80 (133)
T ss_pred CeEEEeCCCCcccCCEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecCCCCCCCEEEEeCCC
Confidence 378999999999999999999999998776 689999999996 66776543 69999999999999999999999999
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHH
Q 009667 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~ 213 (529)
+|..++ ....+.|++||++||+.|.+++++|||||+||||++|+|++++++++
T Consensus 81 ~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 81 RASGHS-NEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred CCCCCC-ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 998764 34578999999999999999999999999999999999999999864
No 15
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.93 E-value=1.5e-27 Score=267.07 Aligned_cols=174 Identities=22% Similarity=0.156 Sum_probs=157.6
Q ss_pred ccccCCCCEEEEEE----cCCccccccEEEEcCCcCCCCCCch-HHHHHhhChhH---HHHHHH----------------
Q 009667 76 PVDHEINSKIYLWR----GNPWNLEVDTVVNSTNENLDEAHSS-PGLHAAAGPGL---AEECAT---------------- 131 (529)
Q Consensus 76 ~~~~~~n~~I~i~~----GDI~~~~~DaIVNsaN~~l~~~~g~-~aI~~~aG~~l---~~e~~~---------------- 131 (529)
......+.++.+++ ||||.+++|||||+||.+|.+|+|+ ++|+++||+++ ++||++
T Consensus 468 r~~~~~~~~~~~~~~~~~~dit~~~~d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~ 547 (725)
T PRK13341 468 RQLGQEGERLAILRDRLWSDITWQRHDRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVL 547 (725)
T ss_pred HHHhhcccHHHHHHHHHhccccccccceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccc
Confidence 34445668899999 9999999999999999999988774 99999999999 888865
Q ss_pred --------------------hCCCCCCCEEEe------------ccCCCCCCeEEEEcCCCcCCcchhhHHHHHHHHHHH
Q 009667 132 --------------------LGGCRTGMAKVT------------NAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRS 179 (529)
Q Consensus 132 --------------------~~~~~~G~~~vT------------~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~ 179 (529)
+|+|++|++++| ++|+|+|+||||+|||.|..+.. ...|.+||++
T Consensus 548 ~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~---~~~l~~~~~~ 624 (725)
T PRK13341 548 LDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE---DELLYKALYS 624 (725)
T ss_pred cccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc---cchhHHHHHH
Confidence 589999999999 99999999999999999987654 3589999999
Q ss_pred HHHHHHHhCCe----------eeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCchhHHHHHHHcc
Q 009667 180 CLELLIENGLK----------SIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLP 249 (529)
Q Consensus 180 ~L~~a~e~~~~----------SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~ 249 (529)
+|++|++++++ |||||+|+||++|||.+.++++++++|++|+..+++ ..+++|+.+++.++..|++.+.
T Consensus 625 ~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~ 703 (725)
T PRK13341 625 ALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPD-YRQALATNLEEERICNLDEELT 703 (725)
T ss_pred HHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCc-HHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999998764 6677799999999999999987
Q ss_pred ccCC
Q 009667 250 LYFP 253 (529)
Q Consensus 250 ~yfp 253 (529)
.+|-
T Consensus 704 ~~~~ 707 (725)
T PRK13341 704 RILG 707 (725)
T ss_pred HHhh
Confidence 7764
No 16
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.92 E-value=6.6e-25 Score=192.88 Aligned_cols=113 Identities=35% Similarity=0.532 Sum_probs=106.8
Q ss_pred EEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeccCCCCCCeEEEEcCCCcCCcchhhHHHHHHH
Q 009667 101 VNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSH 175 (529)
Q Consensus 101 VNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~ 175 (529)
||++|+.+.+|+| +++|++++|++++++|+++ +++++|++++|++++|++++|||+|+|.|+........+.|++
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~ 80 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALES 80 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeecCCCccccceEEEecceeccccccccHHHHHH
Confidence 8999999999877 6899999999999999876 6799999999999999999999999999987766777899999
Q ss_pred HHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHH
Q 009667 176 CYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVA 213 (529)
Q Consensus 176 ~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~ 213 (529)
||++||+.|.+++++||+||+||||++|+|++++|++|
T Consensus 81 ~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 81 AYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 99999999999999999999999999999999999986
No 17
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.88 E-value=3.5e-23 Score=189.88 Aligned_cols=132 Identities=36% Similarity=0.648 Sum_probs=109.9
Q ss_pred cceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHh-hhhcCCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHhHH
Q 009667 396 KIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEF-EPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRK 474 (529)
Q Consensus 396 ~~~y~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~l-e~~~~~~~viV~D~tg~s~~~~~~l~~lkk~~~~l~~~ 474 (529)
.++|.+|+|++||||+++.++++ +...|++.+++|++.++ +.+..++|++|+|+++++..+.++++|+++++++++..
T Consensus 2 ~~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~ 80 (149)
T PF13716_consen 2 IFFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPRK 80 (149)
T ss_dssp SE-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-HH
T ss_pred eEEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHHH
Confidence 46789999999999999999999 76679999999999999 78888999999999999999999999999999999999
Q ss_pred hhcccceEEEEcCChhhHHHH-Hhhhhcccccc-cccEEEECCHhHHhccCCCCCC
Q 009667 475 HQRNLHAIYVLHPTFHLKATI-FTLQLLVDNVV-WKKVVYVDRLLQLFRYVPRMIW 528 (529)
Q Consensus 475 ~p~rLk~iyiVnp~~~~k~~~-~~~~~fls~k~-~~KI~~~~~leeL~~~Ip~e~L 528 (529)
+++||+++|||||++++|.++ .+.+++.+.++ ++||++++++++|.++||+++|
T Consensus 81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i~~~qL 136 (149)
T PF13716_consen 81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHIDPSQL 136 (149)
T ss_dssp HHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTSGGGG-
T ss_pred HhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhCCHHHh
Confidence 999999999999999999999 66688889999 9999999999999999999998
No 18
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.85 E-value=7.4e-21 Score=175.15 Aligned_cols=126 Identities=21% Similarity=0.483 Sum_probs=119.2
Q ss_pred ccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCC--------CEEEEEEcCCCCCCCCCCHHHHHHHHHHHhH
Q 009667 402 GVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQK--------PYSIVYFHSAASLQLQPDLGWMRRLQQVLGR 473 (529)
Q Consensus 402 G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~~~--------~~viV~D~tg~s~~~~~~l~~lkk~~~~l~~ 473 (529)
|.|++||||+++++++++++..+.++++++++.++|..... .+++|+|++++++.+ ++++++|+++++++.
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~-~~~~~lk~~~~~~~~ 92 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN-PDLSVLRKILKILQD 92 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc-ccHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999976643 599999999999876 899999999999999
Q ss_pred HhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECC--HhHHhccCCCCCC
Q 009667 474 KHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPRMIW 528 (529)
Q Consensus 474 ~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~--leeL~~~Ip~e~L 528 (529)
.||+|++.+||||||++++++|+++++|+++++++||+++++ .++|.++||+++|
T Consensus 93 ~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~l 149 (158)
T smart00516 93 HYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQL 149 (158)
T ss_pred HhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhC
Confidence 999999999999999999999999999999999999999987 9999999999887
No 19
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.82 E-value=8.1e-20 Score=166.10 Aligned_cols=133 Identities=14% Similarity=0.066 Sum_probs=110.4
Q ss_pred EEEEEEcCCccc-cccEEEEcCCcCCCCCCc-hHHHHHh---hChhHHHHHHHhCCCCCCCE-EEeccCCCCCCeEEEEc
Q 009667 84 KIYLWRGNPWNL-EVDTVVNSTNENLDEAHS-SPGLHAA---AGPGLAEECATLGGCRTGMA-KVTNAYDLPARRVIHTV 157 (529)
Q Consensus 84 ~I~i~~GDI~~~-~~DaIVNsaN~~l~~~~g-~~aI~~~---aG~~l~~e~~~~~~~~~G~~-~vT~~~~L~~k~IIH~V 157 (529)
+|.+++|||++. ++|+|||++|+.+.+|+| +.+|.++ +..++++.|++.+. ..|++ +++.++++++++|+|++
T Consensus 1 ~i~~v~GDi~~~~~~d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~I~~~~ 79 (140)
T cd02901 1 MITYVKGDLLHAPEAAALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKKEL-LLGGVAVLERGSSLVSRYIYNLP 79 (140)
T ss_pred CeEEEcCccccCCCCCEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhcCC-CCCcEEEEecCCCCCceEEEEee
Confidence 378999999999 999999999999999876 5788886 33355666666544 45554 55667888999999999
Q ss_pred CCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHH
Q 009667 158 GPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (529)
Q Consensus 158 gP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~ 219 (529)
+|.+.... ...+.|++|++++++.|.+++++|||||.||||.+|+|++++++++.+.+..
T Consensus 80 t~~~~~~~--~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 80 TKVHYGPK--SRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred ccCCCCCC--CcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 99876532 2357999999999999999999999999999999999999999998887643
No 20
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.81 E-value=1.4e-19 Score=164.83 Aligned_cols=133 Identities=26% Similarity=0.498 Sum_probs=119.6
Q ss_pred cceEecccCCCCCcEEEEEcccccC-CCCCHHHHHHHHHHHhhhhcC------CCEEEEEEcCCCCCCCC-CCHHHHHHH
Q 009667 396 KIVYRGGVDSEGRPVMVVVGAHFLL-RCLDLERFVLYVVKEFEPLIQ------KPYSIVYFHSAASLQLQ-PDLGWMRRL 467 (529)
Q Consensus 396 ~~~y~~G~D~~GRpViv~~~~~~~~-~~~d~e~ll~y~i~~le~~~~------~~~viV~D~tg~s~~~~-~~l~~lkk~ 467 (529)
++.|.+|.|++||||++++.++.+. ...+.+++++++++.+|..+. ..+++|+|++|+++.+. +..+++|++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 5666667899999999999996554 355669999999999987764 36999999999998754 488999999
Q ss_pred HHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECC-HhHHhccCCCCCC
Q 009667 468 QQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR-LLQLFRYVPRMIW 528 (529)
Q Consensus 468 ~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~-leeL~~~Ip~e~L 528 (529)
+.+++..||+||+.+||||||++++.+|+++++|+++++++||+++++ .++|.++||+++|
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~L 150 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQL 150 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhC
Confidence 999999999999999999999999999999999999999999999998 9999999999987
No 21
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.80 E-value=3.6e-19 Score=178.84 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=129.6
Q ss_pred HHHHHHhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhc------CCCEEEEEEcCCCCCCCCCCHH
Q 009667 389 LSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLI------QKPYSIVYFHSAASLQLQPDLG 462 (529)
Q Consensus 389 l~~i~~~~~~y~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~------~~~~viV~D~tg~s~~~~~~l~ 462 (529)
+..-.+.|..|..|.|++||||+|++++...++..+.+.+.++++.+||..+ ++.+++++|++|++++| +++.
T Consensus 91 v~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN-~d~~ 169 (324)
T KOG1470|consen 91 VAAELETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSN-PDIK 169 (324)
T ss_pred HHHHhhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccC-CCcH
Confidence 4445568999999999999999999999998999999999999999999654 45699999999999986 7899
Q ss_pred HHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECCHhHHhccCCCCCC
Q 009667 463 WMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPRMIW 528 (529)
Q Consensus 463 ~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~leeL~~~Ip~e~L 528 (529)
.++-++.+|+.+||+||...+++|+||+|+.+|++++||+.++++.||+|+.+.++|.+|||+++|
T Consensus 170 ~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~l 235 (324)
T KOG1470|consen 170 FLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPKDDLSEYFDESQL 235 (324)
T ss_pred HHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecChhHHHhhCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 22
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.78 E-value=3.2e-19 Score=164.44 Aligned_cols=138 Identities=18% Similarity=0.294 Sum_probs=113.1
Q ss_pred HHHHhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcC--------CCEEEEEEcCCCCCCCCC--C
Q 009667 391 EIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQ--------KPYSIVYFHSAASLQLQP--D 460 (529)
Q Consensus 391 ~i~~~~~~y~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~~--------~~~viV~D~tg~s~~~~~--~ 460 (529)
++.+.+++|..|+|++||||++++.+++++..+..++++++++..+|..+. ..+++|+|++|+++.+.. .
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~ 81 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWP 81 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHH
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccch
Confidence 567889999999999999999999999999989999999999999987541 349999999999976332 2
Q ss_pred HHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECCH---hHHhccCCCCCC
Q 009667 461 LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRL---LQLFRYVPRMIW 528 (529)
Q Consensus 461 l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~l---eeL~~~Ip~e~L 528 (529)
.+.++.+.++++..||++++.+||+|+|++++.+|+++++|+++++++||+++++. ++|.++||+++|
T Consensus 82 ~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 82 ISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred hhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence 89999999999999999999999999999999999999999999999999999543 579999999887
No 23
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.77 E-value=1.2e-18 Score=176.94 Aligned_cols=142 Identities=27% Similarity=0.451 Sum_probs=128.5
Q ss_pred CHHHHHHh--cceEecc--cCCCCCcEEEEEcccccCC-CCCHHHHHHHHHHHhhhhcCCCEEEEEEcCCCCCCCCCCHH
Q 009667 388 NLSEIAEM--KIVYRGG--VDSEGRPVMVVVGAHFLLR-CLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLG 462 (529)
Q Consensus 388 dl~~i~~~--~~~y~~G--~D~~GRpViv~~~~~~~~~-~~d~e~ll~y~i~~le~~~~~~~viV~D~tg~s~~~~~~l~ 462 (529)
.+-+++++ +++-..| +|++||+|+++.+.++++. ++|-.+++.|..+++|.+++++|++||+|.|..+.+.++++
T Consensus 70 ~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~ 149 (467)
T KOG4406|consen 70 PFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQ 149 (467)
T ss_pred cHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhccceeeehhcCCcccccchHH
Confidence 35555554 5554433 5999999999999999874 67777799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECCHhHHhccCCCCCCC
Q 009667 463 WMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFRYVPRMIWK 529 (529)
Q Consensus 463 ~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~leeL~~~Ip~e~L~ 529 (529)
|+.+.|.-+++++.+|+|++|+|||+|+.+++|++++||++.|+.+||+|+++++||.++|.-++|+
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~lseL~~~l~l~rL~ 216 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSLSELFEALKLNRLK 216 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999877764
No 24
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.54 E-value=1.3e-13 Score=127.27 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=107.0
Q ss_pred EEEEEEcCCccc---cccEEEEcCCcCCCCCCch-HHHHHhhChhHHHHHHHh---CCCCCCCEEE-eccCCCCCCeEEE
Q 009667 84 KIYLWRGNPWNL---EVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAEECATL---GGCRTGMAKV-TNAYDLPARRVIH 155 (529)
Q Consensus 84 ~I~i~~GDI~~~---~~DaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~e~~~~---~~~~~G~~~v-T~~~~L~~k~IIH 155 (529)
.|.+++|||++. ..++|||++|+...+|+|. .+|.++. |++.+++++. +..+.|++.+ |.+++.+.++|+|
T Consensus 2 ~i~~v~GDl~~~~~~~~~~i~h~~N~~g~mG~GIA~~~k~~~-P~~~~~y~~~~~~~~~~lG~~~~~~~~~~~~~~~I~n 80 (154)
T PHA02595 2 IVDYIKGDIVALFLQGKGNIAHGCNCFHTMGSGIAGQLAKAF-PQILEADKLTTEGDVEKLGTFSVWEKYVGGHKAYCFN 80 (154)
T ss_pred eEEEECCcccccccCCCceEEEeeCCCCcCChHHHHHHHHHc-ChHHHHHHHHhcCCccccceEEEEEeeccCCCEEEEE
Confidence 488999999877 5569999999999999875 6666655 7888887654 4677899966 6667788899999
Q ss_pred EcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCC-eeeeccccccCCCCCChHHHHHHHHHH
Q 009667 156 TVGPKYAVKYHTAAENALSHCYRSCLELLIENGL-KSIAMGCIYTEAKNYPREPAAHVAIRT 216 (529)
Q Consensus 156 ~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~-~SIa~P~i~tG~~g~p~~~~a~i~l~~ 216 (529)
..+- |+.+... ....|++|+++..+.+.++++ .|||||.||||.+|.|++.+..++.+.
T Consensus 81 l~tq-~~~~~~~-~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~ 140 (154)
T PHA02595 81 LYTQ-FDPGPNL-EYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA 140 (154)
T ss_pred Eecc-CCCCCCC-cHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence 9765 7665432 356799999999999999998 999999999999999999998887664
No 25
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.49 E-value=9.4e-14 Score=143.12 Aligned_cols=131 Identities=20% Similarity=0.277 Sum_probs=109.2
Q ss_pred eEecccCCCCCcEEEEEcccccCCC----CCHHHHHHHHHHHhhhh--------------cCCCEEEEEEcCCCCCCC--
Q 009667 398 VYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEPL--------------IQKPYSIVYFHSAASLQL-- 457 (529)
Q Consensus 398 ~y~~G~D~~GRpViv~~~~~~~~~~----~d~e~ll~y~i~~le~~--------------~~~~~viV~D~tg~s~~~-- 457 (529)
....|+|+.|+||++-..+..+.+. ....+.+++.+.-++.. ....++.|+|++|+++.+
T Consensus 97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~ 176 (317)
T KOG1471|consen 97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL 176 (317)
T ss_pred ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence 3456899999999999999987653 34445555554333321 134599999999999874
Q ss_pred CCCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEE-E-ECCHhHHhccCCCCCC
Q 009667 458 QPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVV-Y-VDRLLQLFRYVPRMIW 528 (529)
Q Consensus 458 ~~~l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~-~-~~~leeL~~~Ip~e~L 528 (529)
.+.+..++++..+++++||++++++||||+|++|.++|++++|||++++++||+ + .++.++|+++||++.|
T Consensus 177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~L 249 (317)
T KOG1471|consen 177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVL 249 (317)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhC
Confidence 478999999999999999999999999999999999999999999999999999 4 3689999999999986
No 26
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.48 E-value=7.4e-07 Score=88.37 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=84.4
Q ss_pred CEEEEEEcCCccc-------------cccEEEEcCCcCCCCCCch-HHHHHhhChhHHH-HHHH-h--CCCCCCCEEEec
Q 009667 83 SKIYLWRGNPWNL-------------EVDTVVNSTNENLDEAHSS-PGLHAAAGPGLAE-ECAT-L--GGCRTGMAKVTN 144 (529)
Q Consensus 83 ~~I~i~~GDI~~~-------------~~DaIVNsaN~~l~~~~g~-~aI~~~aG~~l~~-e~~~-~--~~~~~G~~~vT~ 144 (529)
..+.++.|++..+ .+||||.|||+..-+|||- .+|.++-|.+-.+ -+++ + +..++|.+-+..
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l~~~y~pvGs~tvId 121 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQLGERYHPVGSCTVID 121 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHTTTS---TT--EEEE
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHHhccccCCCeeEEEE
Confidence 3488888887754 3789999999998888884 6888877654433 3443 2 235678877665
Q ss_pred c----------CCCCCCeEEEEcC---CC---cCCcch-hhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChH
Q 009667 145 A----------YDLPARRVIHTVG---PK---YAVKYH-TAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPRE 207 (529)
Q Consensus 145 ~----------~~L~~k~IIH~Vg---P~---~~~~~~-~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~ 207 (529)
- .+-.++||||+-. |. |..... ...-+.+-++++|.|..+. ..+.+|.+|.||||.+|.|++
T Consensus 122 L~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~ 200 (280)
T PF14519_consen 122 LPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPE 200 (280)
T ss_dssp GGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HH
T ss_pred CchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHH
Confidence 4 2245789999843 32 322110 1123567778888887664 579999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 009667 208 PAAHVAIRTVRRFLEK 223 (529)
Q Consensus 208 ~~a~i~l~~v~~fl~~ 223 (529)
.+|+.|+-+++-|...
T Consensus 201 ~sAk~M~fAl~l~~l~ 216 (280)
T PF14519_consen 201 ISAKQMAFALRLYNLQ 216 (280)
T ss_dssp HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999999754
No 27
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=98.15 E-value=6e-05 Score=69.41 Aligned_cols=129 Identities=10% Similarity=0.018 Sum_probs=94.9
Q ss_pred EEEEEcCCcccccc-----EEEEcCCcCCCCC-Cc-hHHHHHhhChhHHHHH---HHhCCCCCCCEEEeccCC----CC-
Q 009667 85 IYLWRGNPWNLEVD-----TVVNSTNENLDEA-HS-SPGLHAAAGPGLAEEC---ATLGGCRTGMAKVTNAYD----LP- 149 (529)
Q Consensus 85 I~i~~GDI~~~~~D-----aIVNsaN~~l~~~-~g-~~aI~~~aG~~l~~e~---~~~~~~~~G~~~vT~~~~----L~- 149 (529)
|+.++||++....+ +||+..|.....| || +.+|.++. |+..+.. .+.+.+..|++.+..... ..
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~~~dl~LG~~~li~v~~~~~~~~~ 80 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGKMKDLHLGDLHLFPIDDKNSRLKG 80 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHhcCCCccccEEEEEeccccCCCCC
Confidence 78899999998655 9999999999877 45 56776554 6555544 445667789999876522 11
Q ss_pred CCeEEEEcCCCcCCc--chhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHH
Q 009667 150 ARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIR 215 (529)
Q Consensus 150 ~k~IIH~VgP~~~~~--~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~ 215 (529)
..+|...++..+..+ +..-+...|+.|+..+-..|.+ +-.||.||-||+|.+|.+++..-+++-+
T Consensus 81 ~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k 147 (152)
T cd03331 81 PDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRK 147 (152)
T ss_pred CeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 357888888876544 2234567888888888887765 4589999999999999999986665443
No 28
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=97.32 E-value=9.2e-05 Score=87.38 Aligned_cols=150 Identities=12% Similarity=0.078 Sum_probs=131.3
Q ss_pred HHHHHH---hCCcCHHHHHHhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCCCEEEEEEcCCCC
Q 009667 378 SRYLAK---ANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAAS 454 (529)
Q Consensus 378 ~~~l~~---a~~~dl~~i~~~~~~y~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~~~~~viV~D~tg~s 454 (529)
++.+++ ++.+.+.-+++.-.+|+.| .+.|.|+++++.+++-.+..+-+.++++...++.+...-++.++.|.+...
T Consensus 1541 E~ii~~~~lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~~~s~~il~~l~~L~~kp~~hf~~evreD~T~~~ 1619 (2724)
T KOG1826|consen 1541 ENIIREHHLHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLKECSDDILIFLVELCLKPKVHFPGEVREDPTPIE 1619 (2724)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHhhcCcHHHHHHHHHHcCccccCcceeeecCCcCC
Confidence 455553 3466688888888999999 999999999999998888888888999999999999999999999999998
Q ss_pred CCCCCCHHHHHH-HHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccc-cccccEEEECCHhHHhccCCCCCC
Q 009667 455 LQLQPDLGWMRR-LQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDN-VVWKKVVYVDRLLQLFRYVPRMIW 528 (529)
Q Consensus 455 ~~~~~~l~~lkk-~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~-k~~~KI~~~~~leeL~~~Ip~e~L 528 (529)
.++.+-.++++. ++.+.+....+|.++++.+|++.|+|....+.-..+.. |--++..|.+..-.|.++|+.++.
T Consensus 1620 ~d~sfltsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~l~driL~~L~~~k~~~f~e~P~kl~e~id~~~q 1695 (2724)
T KOG1826|consen 1620 FDYSFLTSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTKLHDRILGQLGQPKMEFFNEIPIKLREHIDDYPQ 1695 (2724)
T ss_pred ccHHHHHHHHhhhheeechhhhhhcccccccccchHHHHHHHHHHHHHHhhcCCCceeehhcCCHHHHHHHhhhhh
Confidence 887777777766 99999999999999999999999999999999887777 777888888999999999988764
No 29
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=97.15 E-value=0.0024 Score=64.03 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=67.0
Q ss_pred EEEEcCCCcCC-----cc-hhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCC
Q 009667 153 VIHTVGPKYAV-----KY-HTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKD 226 (529)
Q Consensus 153 IIH~VgP~~~~-----~~-~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~ 226 (529)
||=+..|++.. +. ..+..+.+..-++.+|..|..+|.+++.+.+.|||.|+-|+.++|+...+.+.. -.....
T Consensus 164 vIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p~~VA~~f~evL~~-~~ef~g 242 (266)
T TIGR02452 164 FITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDPAEVAKIFHDLLSP-GGIFKG 242 (266)
T ss_pred EEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCHHHHHHHHHHHhcc-CccccC
Confidence 56666677641 11 234457899999999999999999999999999999999999999998887761 011235
Q ss_pred CccEEEEEecCch
Q 009667 227 KISAVVFCTTTAS 239 (529)
Q Consensus 227 ~i~~V~fv~~~~~ 239 (529)
.++.|+|.+++..
T Consensus 243 ~F~~VvFAI~d~~ 255 (266)
T TIGR02452 243 RIKEVVFAILDRH 255 (266)
T ss_pred ceeEEEEEEeCCC
Confidence 7899999999743
No 30
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=95.98 E-value=0.045 Score=59.54 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=84.6
Q ss_pred CCCCCEEEeccCCCCC-CeEEEEcCCC-cCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCh-----H
Q 009667 135 CRTGMAKVTNAYDLPA-RRVIHTVGPK-YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPR-----E 207 (529)
Q Consensus 135 ~~~G~~~vT~~~~L~~-k~IIH~VgP~-~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~-----~ 207 (529)
+.+|+++||+=-||.. -.|+|-|.-. ...+. -.+..-+-..+||+|+.|..+++.+|.+|.+-+....-.. -
T Consensus 372 l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~-~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~ 450 (510)
T PF10154_consen 372 LKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSN-INSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCL 450 (510)
T ss_pred CCCCceEEecccCcccceEEEEEEecCccccCC-CCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHH
Confidence 5799999999999984 5688988432 22211 1233457789999999999999999999999887543222 2
Q ss_pred HHHHHHHHHHHHHHHHcC----CCccEEEEEecCch---hHHHHHHHccccCC
Q 009667 208 PAAHVAIRTVRRFLEKQK----DKISAVVFCTTTAS---DTEIYKRLLPLYFP 253 (529)
Q Consensus 208 ~~a~i~l~~v~~fl~~~~----~~i~~V~fv~~~~~---~~~~y~~~l~~yfp 253 (529)
.=|+..++.|+-|+-... .....|.|++-..- .+..+...++..|.
T Consensus 451 ~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 451 KRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 347788999999998743 34578999886643 34455566676665
No 31
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.68 E-value=0.062 Score=51.46 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCc--hhHHHHH
Q 009667 168 AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTA--SDTEIYK 245 (529)
Q Consensus 168 ~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~--~~~~~y~ 245 (529)
+..+.|..-.+.+|.+|..++.+.+.+-+-|||.|+-.+..+|+++.+.+..=.++.. .++.|+|.+++. ....+|+
T Consensus 197 ~i~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g-~fkhv~FavlD~n~~~~~iFr 275 (285)
T COG4295 197 EIREALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLG-DFKHVVFAVLDRNMTIVNIFR 275 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhc-ccceEEEEEecCCchHHHHHH
Confidence 3457889999999999999999999999999999999999999999988876655443 688899999974 4467888
Q ss_pred HHccc
Q 009667 246 RLLPL 250 (529)
Q Consensus 246 ~~l~~ 250 (529)
+.+..
T Consensus 276 ~ele~ 280 (285)
T COG4295 276 KELEY 280 (285)
T ss_pred HHHHh
Confidence 88763
No 32
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=40.06 E-value=67 Score=28.60 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhHH-hhcccc-eEEEEcCChhhHHHHHhh-----hhcccccccccEEEECCHhHHhccC
Q 009667 461 LGWMRRLQQVLGRK-HQRNLH-AIYVLHPTFHLKATIFTL-----QLLVDNVVWKKVVYVDRLLQLFRYV 523 (529)
Q Consensus 461 l~~lkk~~~~l~~~-~p~rLk-~iyiVnp~~~~k~~~~~~-----~~fls~k~~~KI~~~~~leeL~~~I 523 (529)
..-|-.++.++.-. +...-+ -+.++|.+-+.+-++.++ ..|+++.-...++++++.+++.++|
T Consensus 64 ~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 64 IGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 44555666666533 333445 799999875555566655 5688888889999999999998765
No 33
>PHA00684 hypothetical protein
Probab=38.53 E-value=73 Score=28.30 Aligned_cols=46 Identities=2% Similarity=-0.128 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHH
Q 009667 170 ENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIR 215 (529)
Q Consensus 170 ~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~ 215 (529)
...|+..+..-+..|+++--.+.-+..||||+.||..++.|....+
T Consensus 55 l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~ 100 (128)
T PHA00684 55 LPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRD 100 (128)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhc
Confidence 4679999999999999999889999999999999999987776543
No 34
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=33.58 E-value=1.7e+02 Score=24.24 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHhhhhc--CCCEEEEEEcC-CCCCCCCCCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhh
Q 009667 422 CLDLERFVLYVVKEFEPLI--QKPYSIVYFHS-AASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTL 498 (529)
Q Consensus 422 ~~d~e~ll~y~i~~le~~~--~~~~viV~D~t-g~s~~~~~~l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~ 498 (529)
.++.+++-. +...++... .+++.+++|++ ++.. +++.-+.....+. ..+..+++++=+|-.+.|.+.+.+++
T Consensus 10 ~~t~ed~~~-~~~~~~~~~~~~~~~~ll~d~~~~~~~---~~~~a~~~~~~~~-~~~~~~~~r~AvV~~~~~~~~~~~~~ 84 (109)
T PF11964_consen 10 KLTEEDYKE-LLPALEELIADHGKIRLLVDLRRDFEG---WSPEARWEDAKFG-LKHLKHFRRIAVVGDSEWIRMIANFF 84 (109)
T ss_dssp EE-HHHHHH-HHHHHHHHHTTSSSEEEEEEEC-CEEE---EHHHHHHHHHHHH-CCCCGGEEEEEEE-SSCCCHHHHHHH
T ss_pred eeCHHHHHH-HHHHHHHHHhcCCceEEEEEecCccCC---CCHHHHHHHHHhc-hhhhcccCEEEEEECcHHHHHHHHHH
Confidence 456666555 455555444 45699999988 7622 2334344444333 34778889999999999999999999
Q ss_pred hhcccccccccEEEE--CCHhH
Q 009667 499 QLLVDNVVWKKVVYV--DRLLQ 518 (529)
Q Consensus 499 ~~fls~k~~~KI~~~--~~lee 518 (529)
..| ...-+.+. ++.++
T Consensus 85 ~~~----~~~~~~~F~~~~~~~ 102 (109)
T PF11964_consen 85 AAF----PPIEVRYFPPDEEEE 102 (109)
T ss_dssp HHH-----SSEEEEE--SSHHH
T ss_pred Hhc----CCCceEEECCCCHHH
Confidence 886 33445666 66554
No 35
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=33.24 E-value=87 Score=31.60 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCcCCc--chhhHHHHHHHHHHHHHHHHHHhCCeeeecc
Q 009667 150 ARRVIHTVGPKYAVK--YHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (529)
Q Consensus 150 ~k~IIH~VgP~~~~~--~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P 195 (529)
|+.|||+++|.-..+ ........=-...+++|+.|.+.+++.+.+.
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 789999998753322 2222223333677778877777777666553
No 36
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=30.63 E-value=1.1e+02 Score=38.88 Aligned_cols=125 Identities=11% Similarity=0.135 Sum_probs=74.4
Q ss_pred cCCCCCCCCC-----hH------HHHHHHHHHHHHhCCcCHHHHHHhcceEecccCCCCCcEEEEEcccccCCCCCHHHH
Q 009667 360 FGDLGGPPLS-----AA------EEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERF 428 (529)
Q Consensus 360 l~~lg~p~~~-----~~------~e~~~~~~~l~~a~~~dl~~i~~~~~~y~~G~D~~GRpViv~~~~~~~~~~~d~e~l 428 (529)
||+||+|... +- +.++..-++|.++..+|++.-.+.+....-.....|=+++.+...+.--..+.++-+
T Consensus 1668 L~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~~edlkvsnalk~s~~etkvsi~ig~~alt~Tnae~tkvl~~Sv 1747 (2724)
T KOG1826|consen 1668 LGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHAFEDLKVSNALKPSVHETKVSIGIGIIALTMTNAEDTKVLIDSV 1747 (2724)
T ss_pred HhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHHHhhccccccccchhhhhhhhcccCceEEEEeccccccchhhhH
Confidence 6999999321 10 122222346777777776662223333322333567777777777766566777766
Q ss_pred HHHHHHHhhhhcCCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHhHHhhcccceEEEEcC
Q 009667 429 VLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHP 487 (529)
Q Consensus 429 l~y~i~~le~~~~~~~viV~D~tg~s~~~~~~l~~lkk~~~~l~~~~p~rLk~iyiVnp 487 (529)
++-.++... .-+-++++|++.|+.....--.++.-++..+|+-.+.++...|-.|-
T Consensus 1748 ~~kdl~~~a---eik~~cliD~tqFtl~ian~~~~ls~~h~~c~~i~qs~~h~~~~~~v 1803 (2724)
T KOG1826|consen 1748 AYKDLQIYA---EIKHCCLIDCTQFTLGIANMRKFLSLVHGLCPEIAQSNCHGCYYFNV 1803 (2724)
T ss_pred HHHHHHHHh---hcceEEEEEcCeeeeccccccchhHHHHhhhHHHhhhheeeeeeEec
Confidence 555544332 33456888999998763333345556677788888888877665553
No 37
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=27.06 E-value=1.4e+02 Score=25.00 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCC
Q 009667 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 205 p~~~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
..++-++.+++.|+.-|+.... .+-++.+.+.+.+++..+.+....||+
T Consensus 23 d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 23 TVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 4566777888999999988764 344555555667888888888888998
No 38
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=26.96 E-value=1.1e+02 Score=31.80 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=11.7
Q ss_pred CCeEEEEcCCCcCC
Q 009667 150 ARRVIHTVGPKYAV 163 (529)
Q Consensus 150 ~k~IIH~VgP~~~~ 163 (529)
|+.|+|++.|.--.
T Consensus 79 cdgVfH~Asp~~~~ 92 (327)
T KOG1502|consen 79 CDGVFHTASPVDFD 92 (327)
T ss_pred CCEEEEeCccCCCC
Confidence 99999999996543
No 39
>PLN02214 cinnamoyl-CoA reductase
Probab=22.77 E-value=1.7e+02 Score=30.20 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeecc
Q 009667 150 ARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (529)
Q Consensus 150 ~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P 195 (529)
++.|||+++|.... .....+.--....++|+.|.+.+++.|.+.
T Consensus 82 ~d~Vih~A~~~~~~--~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDD--PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCC--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 78999999986432 111112223457788888888888877764
No 40
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=22.17 E-value=1.1e+02 Score=26.22 Aligned_cols=41 Identities=27% Similarity=0.159 Sum_probs=31.8
Q ss_pred CeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccc
Q 009667 151 RRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGC 196 (529)
Q Consensus 151 k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~ 196 (529)
..|.||..|.+-.+..-+ ...+..+|+.|++.|++-|.+|.
T Consensus 40 i~i~HT~V~d~lrGqGia-----~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQGIA-----QKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCcHH-----HHHHHHHHHHHHHcCCeEcccch
Confidence 367899999886654332 34577889999999999998886
No 41
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=22.07 E-value=37 Score=35.40 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=24.0
Q ss_pred hhhhhcCCchHHHHHHHHHHHHhhcccchhhccccCCCCCC
Q 009667 326 AFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKMLGFGDLGGP 366 (529)
Q Consensus 326 ~f~~~~~d~d~~r~~~~~~~~~~~~~~~~~~l~~l~~lg~p 366 (529)
.+.+.++|++..++++|+++ .+|| +++|+|
T Consensus 300 ~~l~s~~~~~~~~~~~~~~~---------~~~l--~~~g~p 329 (329)
T cd05130 300 QYLSSNRDHKAVGRRPFDKM---------ATLL--AYLGPP 329 (329)
T ss_pred HHHhccccccccChhHHHHH---------HHHH--HHcCCC
Confidence 45566899999999998886 4555 999998
No 42
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=21.50 E-value=3.1e+02 Score=23.63 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCCCC
Q 009667 204 YPREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPRD 255 (529)
Q Consensus 204 ~p~~~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr~ 255 (529)
-..++-++.+++.+++-|+.... .+-++.+.+.+-.++..+.+....||+..
T Consensus 39 ~~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~~f~~~ 93 (121)
T PF01042_consen 39 GDIEEQTRQALDNIERILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKEFFPDH 93 (121)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHHHSTSS
T ss_pred CCHHHHHHHHHHhhhhhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHHHhccc
Confidence 34455566667777777776552 34455666677788999999999999876
No 43
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=21.47 E-value=1.6e+02 Score=29.35 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCc----CCcchhhHHHHHHHHHHHHHHHHHHhCCeeeec
Q 009667 149 PARRVIHTVGPKY----AVKYHTAAENALSHCYRSCLELLIENGLKSIAM 194 (529)
Q Consensus 149 ~~k~IIH~VgP~~----~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~ 194 (529)
.+++|||++++.- ......+..+.-.....++|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3689999998631 112222222233346778899999888887777
No 44
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=21.44 E-value=1.2e+02 Score=31.28 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCcCC---cchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCC
Q 009667 150 ARRVIHTVGPKYAV---KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKN 203 (529)
Q Consensus 150 ~k~IIH~VgP~~~~---~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g 203 (529)
+++|||.++..... .......+.=-.+..++|+.|.+.+++.+.++. +++.+|
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S-S~~vyg 146 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA-SSSTYG 146 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee-chHhhC
Confidence 67999999753211 111112223335678999999999998888854 233444
No 45
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=21.09 E-value=1e+02 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=36.7
Q ss_pred ccceEEEEcCChhhHHHHHhh-----hhcccccccccEEEECCHhHHhccC
Q 009667 478 NLHAIYVLHPTFHLKATIFTL-----QLLVDNVVWKKVVYVDRLLQLFRYV 523 (529)
Q Consensus 478 rLk~iyiVnp~~~~k~~~~~~-----~~fls~k~~~KI~~~~~leeL~~~I 523 (529)
.-|-+.++|+.-++.-++.++ ..|++++-.+.++++++.+++.++|
T Consensus 125 ~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i 175 (178)
T TIGR00730 125 HQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQV 175 (178)
T ss_pred CCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHH
Confidence 347899999876667666654 4688888889999999999998876
No 46
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=20.41 E-value=1e+02 Score=31.28 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHcCCCccEEEEEecCchh--HHHHHHHccccCCCChhhHHHHhhcCCccccCCCCCccccc
Q 009667 210 AHVAIRTVRRFLEKQKDKISAVVFCTTTASD--TEIYKRLLPLYFPRDKHEEEVAISKLPADVGDENGETIIDE 281 (529)
Q Consensus 210 a~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~--~~~y~~~l~~yfpr~~~e~~~~~~~lp~~~g~~~Ge~~~~e 281 (529)
..-+|+.|.+||+++++.+-.+.|--....+ .+.|.+++..+.-....-.-.....+| .+|+.-|.+|+=.
T Consensus 75 ~~dvL~~i~~FL~~nP~E~Vil~l~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~P-tLge~RGKIVLl~ 147 (279)
T cd08586 75 FGDVLNECYSFLDANPSETIIMSLKQEGSGDGNTDSFAEIFKEYLDNYPSYFYYTESKIP-TLGEVRGKIVLLR 147 (279)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCCC-chHHhcccEEEEE
Confidence 3557789999999998543222222111121 455666664433222111001111223 5677777777544
No 47
>PHA03033 hypothetical protein; Provisional
Probab=20.16 E-value=4.1e+02 Score=23.75 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=47.4
Q ss_pred EEEEEEcCCccc----cccEEEEcCCcCCCCCCch--HHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEc
Q 009667 84 KIYLWRGNPWNL----EVDTVVNSTNENLDEAHSS--PGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTV 157 (529)
Q Consensus 84 ~I~i~~GDI~~~----~~DaIVNsaN~~l~~~~g~--~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~V 157 (529)
++.-+.|+|+.+ +...++......+.+|.|. -.+-+.-|. -+|+++.+ ..+|++.+-.-. -|||+.-|
T Consensus 2 ~i~eIng~~~DLFS~p~~~sLaHCIsAD~~MGaGIA~v~FKkkyg~--V~eLk~Qk-k~~GeVAvLk~d---~RyIYYLI 75 (142)
T PHA03033 2 KIEYINENIWDFLSDDDNINIISFISADFILCKDDCFIYIKKKYNS--IKELKKQK-KKKGEVAYIYKN---NKYIIYII 75 (142)
T ss_pred ceEEecCcchhhhcCCCcceEeeeehhhhhcCCChhhhhHHHHhCC--HHHHHhhc-cCCCeEEEEecC---CEEEEEEE
Confidence 567789966665 4458888888888888763 345555555 34455543 556776655444 38999988
Q ss_pred CCCc
Q 009667 158 GPKY 161 (529)
Q Consensus 158 gP~~ 161 (529)
.-.|
T Consensus 76 TKdy 79 (142)
T PHA03033 76 IADY 79 (142)
T ss_pred eHHH
Confidence 6555
Done!