Query 009667
Match_columns 529
No_of_seqs 405 out of 1854
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:20:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x47_A Macro domain-containing 100.0 1.7E-49 5.9E-54 388.0 18.9 208 20-255 27-235 (235)
2 3q6z_A Poly [ADP-ribose] polym 100.0 2.7E-44 9.2E-49 346.3 19.1 182 72-253 26-214 (214)
3 1spv_A Putative polyprotein/ph 100.0 8.8E-44 3E-48 336.4 21.4 173 82-256 2-179 (184)
4 1yd9_A Core histone macro-H2A. 100.0 3.2E-43 1.1E-47 334.7 20.5 181 70-253 6-192 (193)
5 3q71_A Poly [ADP-ribose] polym 100.0 8.8E-43 3E-47 336.4 21.1 178 77-255 33-218 (221)
6 2xd7_A Core histone macro-H2A. 100.0 1.1E-42 3.6E-47 331.3 20.9 176 72-250 8-192 (193)
7 4abl_A Poly [ADP-ribose] polym 100.0 2.2E-42 7.4E-47 325.5 18.4 159 81-250 20-180 (183)
8 3kh6_A Poly [ADP-ribose] polym 100.0 2.7E-40 9.3E-45 314.4 19.4 159 81-250 31-191 (199)
9 2dx6_A Hypothetical protein TT 100.0 2.1E-39 7.3E-44 299.8 17.6 157 83-248 2-159 (159)
10 1vhu_A Hypothetical protein AF 100.0 2.7E-39 9.3E-44 311.6 15.3 166 81-253 19-202 (211)
11 3eti_A X (ADRP) domain, macro 100.0 2.1E-39 7.1E-44 300.7 12.3 149 83-249 10-167 (168)
12 2acf_A Replicase polyprotein 1 100.0 3.2E-39 1.1E-43 303.4 12.5 163 71-256 8-179 (182)
13 3gpg_A NSP3, non-structural pr 100.0 6.2E-39 2.1E-43 297.0 12.7 155 84-250 11-166 (168)
14 3gqe_A Non-structural protein 100.0 6E-38 2E-42 290.6 15.8 157 82-250 3-160 (168)
15 3ejg_A Non-structural protein 100.0 2.5E-37 8.4E-42 291.4 12.9 148 81-249 36-192 (193)
16 2vri_A Non-structural protein 100.0 5E-36 1.7E-40 280.4 11.4 157 68-249 6-171 (174)
17 3ejf_A Non-structural protein 100.0 5.6E-35 1.9E-39 272.0 13.8 155 77-248 8-175 (176)
18 1njr_A 32.1 kDa protein in ADH 100.0 3.5E-35 1.2E-39 292.9 8.2 173 82-263 44-254 (284)
19 4gua_A Non-structural polyprot 100.0 4.1E-32 1.4E-36 283.6 15.5 154 84-249 345-499 (670)
20 3pg7_A Neurofibromin; SEC lipi 99.9 1.7E-27 5.7E-32 236.1 11.3 144 386-529 1-145 (256)
21 3peg_A Neurofibromin; SEC14 do 99.9 3.8E-26 1.3E-30 229.6 9.4 156 374-529 5-164 (290)
22 2jyc_A Uncharacterized protein 99.9 4.7E-25 1.6E-29 203.3 15.6 130 81-219 18-150 (160)
23 2eee_A Uncharacterized protein 99.9 3.2E-25 1.1E-29 202.5 13.2 130 81-219 7-139 (149)
24 2fg1_A Conserved hypothetical 99.9 1.9E-23 6.4E-28 192.6 12.7 132 83-218 4-147 (158)
25 3hx3_A Retinaldehyde-binding p 99.9 7.3E-22 2.5E-26 201.9 9.4 140 389-528 135-284 (316)
26 1r5l_A Alpha-TTP, protein (alp 99.8 6.9E-21 2.4E-25 189.0 12.4 140 388-528 75-225 (262)
27 1aua_A Phosphatidylinositol tr 99.8 7.2E-20 2.4E-24 185.3 11.7 138 391-528 99-257 (296)
28 3q8g_A CRAL-TRIO domain-contai 99.8 1.6E-19 5.4E-24 184.9 10.8 137 392-528 115-272 (320)
29 1olm_A SEC14-like protein 2; l 99.8 8.9E-19 3E-23 184.8 12.9 129 400-528 88-237 (403)
30 3sig_A PArg, poly(ADP-ribose) 98.8 2.4E-08 8.4E-13 98.7 10.3 167 82-249 64-275 (277)
31 3jru_B Probable cytosol aminop 45.4 2.9E+02 0.01 29.0 14.6 108 83-195 3-113 (490)
32 3h8g_F Cytosol aminopeptidase; 39.4 2.6E+02 0.009 29.4 12.4 108 83-195 1-111 (497)
33 2vg0_A Short-chain Z-isoprenyl 34.2 55 0.0019 30.9 5.7 49 174-223 33-81 (227)
34 2q3l_A Uncharacterized protein 28.0 1.1E+02 0.0037 25.6 6.1 114 395-518 7-120 (126)
35 3k0t_A Endoribonuclease L-PSP, 26.5 1.6E+02 0.0054 25.4 6.9 49 205-253 63-114 (143)
36 3l7q_A Putative translation in 25.8 1.6E+02 0.0055 24.5 6.7 50 205-254 45-97 (125)
37 3ugs_B Undecaprenyl pyrophosph 23.4 2.1E+02 0.0073 26.8 7.6 48 175-223 37-84 (225)
38 3sbx_A Putative uncharacterize 23.0 52 0.0018 30.1 3.2 65 461-525 119-189 (189)
39 3kjj_A NMB1025 protein; YJGF p 21.5 1.8E+02 0.0061 24.5 6.2 50 205-254 42-94 (128)
40 1qd9_A Purine regulatory prote 21.2 2E+02 0.0069 23.8 6.5 50 205-254 44-96 (124)
41 3k12_A Uncharacterized protein 20.8 2E+02 0.0068 23.8 6.3 47 208-254 37-86 (122)
42 1c76_A Staphylokinase, SAK; be 20.5 1.8E+02 0.0061 24.8 5.6 54 400-453 29-85 (136)
43 3r0p_A L-PSP putative endoribo 20.3 2E+02 0.007 23.8 6.3 48 206-253 49-99 (127)
44 2ka5_A Putative anti-sigma fac 20.2 2.9E+02 0.0098 22.5 7.2 73 442-524 51-123 (125)
No 1
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-49 Score=387.95 Aligned_cols=208 Identities=39% Similarity=0.671 Sum_probs=188.0
Q ss_pred CceeecCCCCCCchhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCEEEEEEcCCccccccE
Q 009667 20 DSVVTLDQVPRWSDAEHRLSLDYESEDPSFSNSYFADPLASSSGAESSGNGMVSRFPVDHEINSKIYLWRGNPWNLEVDT 99 (529)
Q Consensus 20 ~~~v~~~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~n~~I~i~~GDI~~~~~Da 99 (529)
+++|++++||+|++..... . +....+.|+++..+|.+|.|++|||+++++||
T Consensus 27 ~~~v~~~~ip~w~~~~~~~-------~---------------------~~~~~~~~~~~~~~~~~i~i~~GDIt~~~vDa 78 (235)
T 2x47_A 27 KDFVRLKKIPTWKEMAKGV-------A---------------------VKVEEPRYKKDKQLNEKISLLRSDITKLEVDA 78 (235)
T ss_dssp SCCEEGGGSCCHHHHHTTC-------C---------------------------CCCCCHHHHTTEEEEESCGGGEESSE
T ss_pred cCccchhhCCcHHHhcccc-------C---------------------ccccCCCCCcccccCCEEEEEeCccCcccCCE
Confidence 4699999999999855410 0 01124578899999999999999999999999
Q ss_pred EEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCCCcCCcchhhHHHHHHHHHH
Q 009667 100 VVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYR 178 (529)
Q Consensus 100 IVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~ 178 (529)
|||+||++|.+||| ++||+++||++|++||+++++|++|++++|+||+|||+||||+|||.|+.+......+.|++||+
T Consensus 79 IVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~ 158 (235)
T 2x47_A 79 IVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYL 158 (235)
T ss_dssp EEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSCCCCBTCEEEEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHH
T ss_pred EEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhCCCCCCceEEecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHH
Confidence 99999999998887 58999999999999999999999999999999999999999999999987555556789999999
Q ss_pred HHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCchhHHHHHHHccccCCCC
Q 009667 179 SCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRD 255 (529)
Q Consensus 179 ~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfpr~ 255 (529)
+||++|.+++++|||||+||||++|||++++|++|++++++|++++++++++|+||++++.++++|+++|+.||||.
T Consensus 159 ~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~V~fv~f~~~~~~~y~~~l~~~fp~~ 235 (235)
T 2x47_A 159 SSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRLPHYFPVA 235 (235)
T ss_dssp HHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEEECSHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999887779999999999999999999999999984
No 2
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=2.7e-44 Score=346.27 Aligned_cols=182 Identities=22% Similarity=0.317 Sum_probs=169.1
Q ss_pred CCCcccccCCCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeccC
Q 009667 72 VSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAY 146 (529)
Q Consensus 72 ~~~f~~~~~~n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~~ 146 (529)
...|.+....+.+|.+|+|||+++++|||||+||++|.+||| ++||+++||++|++||+++ ++|++|++++|++|
T Consensus 26 ~~~~~~~~~~g~~I~v~~GDIt~~~vDaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~~ 105 (214)
T 3q6z_A 26 KCFSRTVLAPGVVLIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAG 105 (214)
T ss_dssp -CCEEEEEETTEEEEEEECCTTSCSSSEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEECT
T ss_pred eeEEEEEcCCCcEEEEEecccccCcCCEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEcCC
Confidence 345777778899999999999999999999999999998877 5899999999999999876 79999999999999
Q ss_pred CCCCCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcC-
Q 009667 147 DLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK- 225 (529)
Q Consensus 147 ~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~- 225 (529)
+||||||||+|||.|+.+...+..+.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|+++++
T Consensus 106 ~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~~~ 185 (214)
T 3q6z_A 106 KLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKD 185 (214)
T ss_dssp TSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999876655678999999999999999999999999999999999999999999999999998874
Q ss_pred -CCccEEEEEecCchhHHHHHHHccccCC
Q 009667 226 -DKISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 226 -~~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
..+++|+||+++++++++|++.++.||.
T Consensus 186 ~~~l~~V~fv~~d~~~~~~f~~~l~~~f~ 214 (214)
T 3q6z_A 186 GHCLKEIYLVDVSEKTVEAFAEAVKTVFK 214 (214)
T ss_dssp -CCCCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999883
No 3
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=8.8e-44 Score=336.37 Aligned_cols=173 Identities=33% Similarity=0.539 Sum_probs=158.7
Q ss_pred CCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeccCCCCCCeEEEE
Q 009667 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRVIHT 156 (529)
Q Consensus 82 n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k~IIH~ 156 (529)
|.+|.+++|||+++++|||||+||++|.+||| ++||+++||++|++||+++ ++|++|++++|++|+||||||||+
T Consensus 2 ~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~~~~L~~k~VIH~ 81 (184)
T 1spv_A 2 KTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHT 81 (184)
T ss_dssp -CCEEEEESCGGGCCCSEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEECCTTSSSSEEEEE
T ss_pred CCeEEEEeCcCCcCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEeeCCCCCCCEEEEE
Confidence 57899999999999999999999999998877 5899999999999999987 899999999999999999999999
Q ss_pred cCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEec
Q 009667 157 VGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTT 236 (529)
Q Consensus 157 VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~ 236 (529)
|||.|+.+... ..+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ .+++|+||++
T Consensus 82 vgP~~~~~~~~-~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~-~~~~V~~v~~ 159 (184)
T 1spv_A 82 VGPVWRGGEQN-EDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHA-LPEQVYFVCY 159 (184)
T ss_dssp CCCCCSSSSSS-HHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCC-SSSEEEEEES
T ss_pred cCCcccCCCcc-hHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 99999876533 468999999999999999999999999999999999999999999999999999875 5889999999
Q ss_pred CchhHHHHHHHccccCCCCh
Q 009667 237 TASDTEIYKRLLPLYFPRDK 256 (529)
Q Consensus 237 ~~~~~~~y~~~l~~yfpr~~ 256 (529)
++.++++|+++|+.|||+..
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~ 179 (184)
T 1spv_A 160 DEENAHLYERLLTQQGDEEH 179 (184)
T ss_dssp SHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHHHhCCccc
Confidence 99999999999999999764
No 4
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=3.2e-43 Score=334.70 Aligned_cols=181 Identities=22% Similarity=0.331 Sum_probs=165.3
Q ss_pred CCCCCcccccCCCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEec
Q 009667 70 GMVSRFPVDHEINSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTN 144 (529)
Q Consensus 70 ~~~~~f~~~~~~n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~ 144 (529)
+.+..++.....|.+|.|++|||+++++|||||+||++|.+||| +++|+++||++|++||+++ ++|++|++++|+
T Consensus 6 ~~~~~~~~~~~~~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~ 85 (193)
T 1yd9_A 6 GFTVLSTKSLFLGQKLQVVQADIASIDSDAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSA 85 (193)
T ss_dssp CCCEEEEEECTTSCEEEEECSCGGGCCCSEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEE
T ss_pred cceEecccCcCCCCEEEEEeCccCcCcCCEEEECCCccCCCCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEec
Confidence 34455566777899999999999999999999999999998877 5899999999999999875 899999999999
Q ss_pred cCCCCCCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHc
Q 009667 145 AYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQ 224 (529)
Q Consensus 145 ~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~ 224 (529)
+|+||||||||+|||.|+.. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|++++
T Consensus 86 ~~~L~~k~VIH~vgP~~~~~---~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~ 162 (193)
T 1yd9_A 86 GHGLPAKFVIHCNSPVWGSD---KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVST 162 (193)
T ss_dssp CTTSSSSEEEEECCCCTTST---THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCcCCc---chHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999753 346899999999999999999999999999999999999999999999999999875
Q ss_pred C-CCccEEEEEecCchhHHHHHHHccccCC
Q 009667 225 K-DKISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 225 ~-~~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
+ +.+++|+||++++.++++|++.|..+.+
T Consensus 163 ~~~~l~~V~fv~~~~~~~~~~~~~l~~~~~ 192 (193)
T 1yd9_A 163 MSSSIKTVYFVLFDSESIGIYVQEMAKLDA 192 (193)
T ss_dssp TTCCCCEEEEECCSHHHHHHHHHHHTTTTC
T ss_pred CCCCcCEEEEEECCHHHHHHHHHHHHhhhc
Confidence 4 6799999999999999999999876543
No 5
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.8e-43 Score=336.43 Aligned_cols=178 Identities=25% Similarity=0.332 Sum_probs=160.5
Q ss_pred cccCCCCEEEEEEcCCccccccEEEEcCCcCCC-CCCc-hHHHHHhhChhHHHHHHHhC---CCCCCCEEEeccCCCCCC
Q 009667 77 VDHEINSKIYLWRGNPWNLEVDTVVNSTNENLD-EAHS-SPGLHAAAGPGLAEECATLG---GCRTGMAKVTNAYDLPAR 151 (529)
Q Consensus 77 ~~~~~n~~I~i~~GDI~~~~~DaIVNsaN~~l~-~~~g-~~aI~~~aG~~l~~e~~~~~---~~~~G~~~vT~~~~L~~k 151 (529)
+....|.+|.||+|||+++++|||||+||++|. ++|| ++||+++||++|++||++++ +|++|++++|+||+||||
T Consensus 33 ~~t~~g~~I~i~~GDIt~~~vDAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~g~~Lp~k 112 (221)
T 3q71_A 33 LVSPGGLQMLLVKEGVQNAKTDVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNLDCR 112 (221)
T ss_dssp EECTTCCEEEEEESCGGGCCSSEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEECTTSSSS
T ss_pred eeecCCcEEEEEeCcccCCcCCEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEcCCCCCCC
Confidence 345678999999999999999999999999995 4554 68999999999999999874 899999999999999999
Q ss_pred eEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCccE
Q 009667 152 RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISA 230 (529)
Q Consensus 152 ~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~-~~i~~ 230 (529)
||||+|||.|+.+.. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|+++|++|+++++ .++++
T Consensus 113 ~VIHtVgP~~~~~~~-~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~~~~l~~ 191 (221)
T 3q71_A 113 YVLHVVAPEWRNGST-SSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQE 191 (221)
T ss_dssp EEEEECCCCCTTTCH-HHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCCCSSCCE
T ss_pred EEEEeCCCCCcCCCc-hHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 999999999988764 3468999999999999999999999999999999999999999999999999999985 68999
Q ss_pred EEEEecCc--hhHHHHHHHccccCCCC
Q 009667 231 VVFCTTTA--SDTEIYKRLLPLYFPRD 255 (529)
Q Consensus 231 V~fv~~~~--~~~~~y~~~l~~yfpr~ 255 (529)
|+||++++ ..+++|++.|...||.+
T Consensus 192 V~fv~f~~d~~~~~~f~~~l~~r~~~~ 218 (221)
T 3q71_A 192 VHFLLHPSDHENIQAFSDEFARRANGN 218 (221)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHC--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHccCC
Confidence 99999965 45689999998888743
No 6
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=331.27 Aligned_cols=176 Identities=20% Similarity=0.321 Sum_probs=162.3
Q ss_pred CCCcccccCCCCEEEEEEcCCccc---cccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEe
Q 009667 72 VSRFPVDHEINSKIYLWRGNPWNL---EVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVT 143 (529)
Q Consensus 72 ~~~f~~~~~~n~~I~i~~GDI~~~---~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT 143 (529)
...+..+...|.+|.+++|||+++ ++|||||+||++|.+||| +++|+++||++|++||+++ ++|++|++++|
T Consensus 8 ~~~~~~~~~~~~~i~i~~GDIt~~~~~~~DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT 87 (193)
T 2xd7_A 8 TILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVS 87 (193)
T ss_dssp EEEEEEECTTSCEEEEEECCGGGGGGCCCSEEEEEECTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred eEecccccCCCCEEEEEeCcccccCCCCCCEEEECCCccCCCccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEe
Confidence 344556677899999999999999 999999999999998887 5899999999999999875 89999999999
Q ss_pred ccCCCCCCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 009667 144 NAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 223 (529)
Q Consensus 144 ~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~ 223 (529)
++|+||||||||+|||.|+.+ ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++
T Consensus 88 ~~~~L~~k~VIH~vgP~~~~~---~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~ 164 (193)
T 2xd7_A 88 QSSGLAAKFVIHCHIPQWGSD---KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDD 164 (193)
T ss_dssp ECTTSSSSEEEEEECCCTTST---THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCEEEEECCCcCCCc---chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999754 35689999999999999999999999999999999999999999999999999998
Q ss_pred cC-CCccEEEEEecCchhHHHHHHHccc
Q 009667 224 QK-DKISAVVFCTTTASDTEIYKRLLPL 250 (529)
Q Consensus 224 ~~-~~i~~V~fv~~~~~~~~~y~~~l~~ 250 (529)
++ +++++|+||+++++++++|+++|..
T Consensus 165 ~~~~~l~~V~fv~~~~~~~~~~~~~l~~ 192 (193)
T 2xd7_A 165 SSASSLKNVYFLLFDSESIGIYVQEMAK 192 (193)
T ss_dssp CSSCCCCEEEEEECSHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEEECCHHHHHHHHHHHhh
Confidence 65 6799999999999999999998753
No 7
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=2.2e-42 Score=325.45 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=152.1
Q ss_pred CCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCC
Q 009667 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP 159 (529)
++.+|++|+|||+++++|||||+||++|.+|+| ++||+++||++|++||+++++|++|++++|+||+||||||||+|||
T Consensus 20 g~~~i~i~~GDIt~~~~DaIVNaaN~~l~~ggGV~~aI~~aaG~~l~~ec~~~~~~~~G~a~iT~~~~L~~k~VIH~vgP 99 (183)
T 4abl_A 20 GSIIFQVASGDITKEEADVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQAQQRKNDYIITGGGFLRCKNIIHVIGG 99 (183)
T ss_dssp TTEEEEEEESCGGGCBCSEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHHHHSCCSEEEEECTTSBSSEEEEEETT
T ss_pred CCEEEEEEeCcccCcccCEEEECCCCCCCCCccHHHHHHHHhhHHHHHHHHHhcCCCCCceEEecCCCCCCCEEEEeCcH
Confidence 678999999999999999999999999998876 5899999999999999999999999999999999999999999999
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCccEEEEEecCc
Q 009667 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISAVVFCTTTA 238 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~-~~i~~V~fv~~~~ 238 (529)
.| |++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ ..+++|+||++++
T Consensus 100 ~~-----------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~ 168 (183)
T 4abl_A 100 ND-----------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLP 168 (183)
T ss_dssp SC-----------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEEESCH
T ss_pred HH-----------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCH
Confidence 76 99999999999999999999999999999999999999999999999999885 6899999999999
Q ss_pred hhHHHHHHHccc
Q 009667 239 SDTEIYKRLLPL 250 (529)
Q Consensus 239 ~~~~~y~~~l~~ 250 (529)
+++++|++.|..
T Consensus 169 ~~~~~f~~~l~k 180 (183)
T 4abl_A 169 QVLDVFYANMKK 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 8
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=2.7e-40 Score=314.43 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=151.9
Q ss_pred CCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCC
Q 009667 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGP 159 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP 159 (529)
++.+|++++|||+++++|||||+||+.+.+|+| +++|+++||++|++||+++++|++|++++|+||+||||||||+|||
T Consensus 31 ~~~~i~i~~GDIt~~~vDaIVNaaN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~~G~a~iT~g~~L~~k~VIH~vgp 110 (199)
T 3kh6_A 31 GAITFQVATGDIATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLAAQPHRDFIITPGGCLKCKIIIHVPGG 110 (199)
T ss_dssp TTEEEEEEESCGGGCCSSEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHHTSCCCSSEEEECTTSSSSEEEEEETT
T ss_pred CCEEEEEEecccccCcCCEEEECCCCCCCCCchHHHHHHHHhhHHHHHHHHHhCCCCCCeEEEecCCCCCCCEEEEeCCC
Confidence 678999999999999999999999999998877 5899999999999999999999999999999999999999999999
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcC-CCccEEEEEecCc
Q 009667 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQK-DKISAVVFCTTTA 238 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~-~~i~~V~fv~~~~ 238 (529)
. .|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+++++ ..+++|+||++++
T Consensus 111 ~-----------~L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~ 179 (199)
T 3kh6_A 111 K-----------DVRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHSTPSLKTVKVVIFQP 179 (199)
T ss_dssp S-----------CHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCSSCSCCEEEEEESST
T ss_pred H-----------HHHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCH
Confidence 4 399999999999999999999999999999999999999999999999999875 6799999999999
Q ss_pred hhHHHHHHHccc
Q 009667 239 SDTEIYKRLLPL 250 (529)
Q Consensus 239 ~~~~~y~~~l~~ 250 (529)
+++++|++.|..
T Consensus 180 ~~~~~f~~~l~~ 191 (199)
T 3kh6_A 180 ELLNIFYDSMKK 191 (199)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 9
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=2.1e-39 Score=299.79 Aligned_cols=157 Identities=27% Similarity=0.394 Sum_probs=148.1
Q ss_pred CEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCCCc
Q 009667 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKY 161 (529)
Q Consensus 83 ~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~ 161 (529)
.+|++++|||+++++|||||++|+++.+|+| +++|++++|+++++||++++++++|++++|++++|||+||||+|||.|
T Consensus 2 ~~i~i~~GDI~~~~~daIVnaaN~~l~~ggGv~~aI~~~~G~~l~~~c~~~g~~~~G~a~it~~~~L~~~~Vih~vgp~~ 81 (159)
T 2dx6_A 2 ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGD 81 (159)
T ss_dssp CEEEEEESCGGGCCSSEEEEEEETTCCCCSTTHHHHHHHHCTHHHHHHHHHCCCCTTCEEEEECTTSSSSEEEEEEEESS
T ss_pred eEEEEEECcCCcCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHhcCCCCCCcEEEecCCCCCCCEEEEEeCCCC
Confidence 4799999999999999999999999998876 699999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCchhH
Q 009667 162 AVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDT 241 (529)
Q Consensus 162 ~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~ 241 (529)
+ +. ..+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++| +++++|+||++++.++
T Consensus 82 ~-~~---~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-----~~~~~V~~v~~~~~~~ 152 (159)
T 2dx6_A 82 E-PA---SLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-----PDTLEVTLYGYREEDA 152 (159)
T ss_dssp S-CC---CHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-----CTTCEEEEEESSHHHH
T ss_pred C-Cc---hHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-----CCCCEEEEEECCHHHH
Confidence 7 22 3679999999999999999999999999999999999999999999999999 4688999999999999
Q ss_pred HHHHHHc
Q 009667 242 EIYKRLL 248 (529)
Q Consensus 242 ~~y~~~l 248 (529)
++|+++|
T Consensus 153 ~~~~~~l 159 (159)
T 2dx6_A 153 EAIRRAL 159 (159)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999875
No 10
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=2.7e-39 Score=311.59 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=154.2
Q ss_pred CCCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhC----hhHHHHHHH----hCC--CCCCCEEEeccCCCC
Q 009667 81 INSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAG----PGLAEECAT----LGG--CRTGMAKVTNAYDLP 149 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG----~~l~~e~~~----~~~--~~~G~~~vT~~~~L~ 149 (529)
++.+|.+++|||+++++|||||+||+.|.+|+| +++|+++|| ++|++||++ +++ |++|++++|++|+||
T Consensus 19 ~~~~i~i~~GDIt~~~vDaIVNaaN~~l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~~G~a~iT~~~~L~ 98 (211)
T 1vhu_A 19 GDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLE 98 (211)
T ss_dssp TTEEEEEEESCGGGSCCSEEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTCCEEEECGGGG
T ss_pred CCEEEEEEecccCcCCCCEEEECCCccccCccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCcccCCcEEEEECCCCC
Confidence 567999999999999999999999999998877 589999999 999999988 688 999999999999999
Q ss_pred C---CeEEEEcCC----CcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHH
Q 009667 150 A---RRVIHTVGP----KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLE 222 (529)
Q Consensus 150 ~---k~IIH~VgP----~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~ 222 (529)
| |||||+||| .|.. ...+.|++||++||++|.+++++|||||+||||++|||++++|++|++++++|+
T Consensus 99 ~~g~k~VIH~vgP~~~~~~~~----~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l- 173 (211)
T 1vhu_A 99 ERGIKYVFHTVGPICSGMWSE----ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFK- 173 (211)
T ss_dssp GGTCCEEEEEECCCCTTCCCH----HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCC-
T ss_pred ccCcCEEEEecCCccccccCc----chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHH-
Confidence 9 999999999 8843 456899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCccEEEEEecCchhHHHHHHHccccCC
Q 009667 223 KQKDKISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 223 ~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
++ + +++|+||++++.++++|+++|+.|+.
T Consensus 174 ~~-~-l~~V~~v~~~~~~~~~~~~~l~~~~~ 202 (211)
T 1vhu_A 174 GS-A-VKEVALVIYDRKSAEVALKVFERSLE 202 (211)
T ss_dssp CS-S-CCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred hC-C-CCEEEEEECCHHHHHHHHHHHHHhhc
Confidence 44 3 89999999999999999999987764
No 11
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=2.1e-39 Score=300.65 Aligned_cols=149 Identities=18% Similarity=0.227 Sum_probs=138.5
Q ss_pred CEEEEEEcCCcc----ccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeccCCCCCCeE
Q 009667 83 SKIYLWRGNPWN----LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPARRV 153 (529)
Q Consensus 83 ~~I~i~~GDI~~----~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k~I 153 (529)
.+|.+|+||||+ +++|||||+||++|.+||| ++||+++||++|++||+++ ++|++|++++|+|| |||+||
T Consensus 10 ~~i~l~~GDIt~~~~~~~vDaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~g~-l~~~~V 88 (168)
T 3eti_A 10 GKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENV-LEHLSV 88 (168)
T ss_dssp TTEEEEESCHHHHHHHHCCSEEEEEECTTCCCCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEEEE-ETTEEE
T ss_pred CeEEEEeCcccccCCCCCCCEEEeCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEecCC-CCccEE
Confidence 689999999999 8999999999999998876 6999999999999999986 89999999999999 999999
Q ss_pred EEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEE
Q 009667 154 IHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVF 233 (529)
Q Consensus 154 IH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~f 233 (529)
||||||.|... ..++.|++||++||+. .+|||||+||||++|||++++|++|++++++ ++|+|
T Consensus 89 IHtVgP~~~~~---~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~---------~~V~~ 151 (168)
T 3eti_A 89 MNAVGPRNGDS---RVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLEVSLQCLLKTVTD---------RDLNV 151 (168)
T ss_dssp EEEECCCTTST---THHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS---------SCEEE
T ss_pred EEecCCCCCcc---hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc---------CeEEE
Confidence 99999999653 3468999999999985 4899999999999999999999999999987 57999
Q ss_pred EecCchhHHHHHHHcc
Q 009667 234 CTTTASDTEIYKRLLP 249 (529)
Q Consensus 234 v~~~~~~~~~y~~~l~ 249 (529)
|+|+++++++|+++|.
T Consensus 152 v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 152 FVYTDQERVTIENFFN 167 (168)
T ss_dssp EECCHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHhc
Confidence 9999999999999874
No 12
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=3.2e-39 Score=303.40 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=145.2
Q ss_pred CCCCcccccCCCCEEEEEEcCCccc----cccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHH----hCCCCCCCEE
Q 009667 71 MVSRFPVDHEINSKIYLWRGNPWNL----EVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECAT----LGGCRTGMAK 141 (529)
Q Consensus 71 ~~~~f~~~~~~n~~I~i~~GDI~~~----~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~----~~~~~~G~~~ 141 (529)
++..|+.+..+|.+|.||+|||+++ ++|||||+||++|.+||| +++|+++||++|++||++ .++|++|+++
T Consensus 8 ~~~~~~~~~~~~~~i~i~~GDIt~~~~~~~vDAIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~ 87 (182)
T 2acf_A 8 PVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSC 87 (182)
T ss_dssp CSCCCCSCEECSSSEEEEESCHHHHHHHHCCSEEEEECCTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEE
T ss_pred CccccccccccCCeEEEEeCcccccccCCCCCEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEE
Confidence 3556889999999999999999999 999999999999999887 589999999999999986 4899999999
Q ss_pred EeccCCCCCCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHH
Q 009667 142 VTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFL 221 (529)
Q Consensus 142 vT~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl 221 (529)
+|++|+|+ ++|||+|||.|+.+. .++.|++||+++ ++++|||||+||||++|||++++|++|++++++
T Consensus 88 iT~~~~L~-~~VIH~vgP~~~~~~---~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~-- 155 (182)
T 2acf_A 88 LLSGHNLA-KKCLHVVGPNLNAGE---DIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT-- 155 (182)
T ss_dssp EEECTTTC-SEEEEECCCCGGGTC---CTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS--
T ss_pred EeeCCCCC-ceEEEECCCCCCCCc---hHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC--
Confidence 99999995 799999999997643 356899999996 799999999999999999999999999999985
Q ss_pred HHcCCCccEEEEEecCchhHHHHHHHccccCCCCh
Q 009667 222 EKQKDKISAVVFCTTTASDTEIYKRLLPLYFPRDK 256 (529)
Q Consensus 222 ~~~~~~i~~V~fv~~~~~~~~~y~~~l~~yfpr~~ 256 (529)
+|+||+++++ +|+++|+.||||..
T Consensus 156 --------~V~~v~~d~~---~y~~~l~~~~p~~~ 179 (182)
T 2acf_A 156 --------QVYIAVNDKA---LYEQVVMDYLDNLK 179 (182)
T ss_dssp --------EEEEEESCHH---HHHHHHHHHC----
T ss_pred --------cEEEEECCHH---HHHHHHHHhCCCCC
Confidence 7999999644 89999999999874
No 13
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=6.2e-39 Score=296.98 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=141.1
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCCCcC
Q 009667 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (529)
...+|+||||++++|||||+||++|.+||| ++||+++||+++ +.++|++|++++|+++ ||||||||||.|+
T Consensus 11 ~~~~~~GDIt~~~vDAIVNaAN~~l~~ggGV~~aI~~aaG~~l-----~~~~~~~G~a~iT~~~---~k~VIHtVGP~~~ 82 (168)
T 3gpg_A 11 SYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESF-----KNSATPVGTAKTVMCG---TYPVIHAVGPNFS 82 (168)
T ss_dssp CC-CEESCGGGCCSSCEEEECCTTCCCCSHHHHHHHHHCGGGG-----TTCCCCTTCEEEEEET---TEEEEEECCCCTT
T ss_pred ceEEEeCcCCcccCCEEEeCCCcccCCCchHHHHHHHHhhHHh-----hcCCCCCCCEEEecCC---CCEEEEeCCCCcC
Confidence 457899999999999999999999998887 589999999987 3789999999999995 9999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCchhHH
Q 009667 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (529)
Q Consensus 163 ~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~ 242 (529)
.+...++.+.|++||++||++|.+++++|||||+||||++|||++++|+ +++++++|++. .+++|+||++++++++
T Consensus 83 ~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~---~~~~V~fv~f~~~~~~ 158 (168)
T 3gpg_A 83 NYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDS---TDADVVIYCRDKEWEK 158 (168)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTT---CCSEEEEEESCHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccC---CCCEEEEEECCHHHHH
Confidence 8877666789999999999999999999999999999999999999999 88999888754 4789999999999999
Q ss_pred HHHHHccc
Q 009667 243 IYKRLLPL 250 (529)
Q Consensus 243 ~y~~~l~~ 250 (529)
+|+++|..
T Consensus 159 ~y~~~l~~ 166 (168)
T 3gpg_A 159 KISEAIQM 166 (168)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998863
No 14
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=6e-38 Score=290.65 Aligned_cols=157 Identities=16% Similarity=0.222 Sum_probs=143.4
Q ss_pred CCEEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCCC
Q 009667 82 NSKIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPK 160 (529)
Q Consensus 82 n~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~ 160 (529)
+.+|.+|+||||++++|||||+||+.|.+|+| +++|++++|++++ .++|++|++++|++ +||||||+|||.
T Consensus 3 ~~~i~v~~GDIt~~~vDAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----~~~~~~G~a~iT~~---~~k~VIH~VgP~ 74 (168)
T 3gqe_A 3 APSYHVVRGDIATATEGVIINAANSKGQPGGGVCGALYKKFPESFD-----LQPIEVGKARLVKG---AAKHIIHAVGPN 74 (168)
T ss_dssp CCEEEEEESCGGGCCSSEEEEEECTTSCCTTGGGSHHHHHCGGGCC-----CCCCCTTCEEEECC---TTCCEEEEECCC
T ss_pred CCeEEEEeCcccCcccCEEEeCCCcccCCCccHHHHHHHHhhHHhc-----CCCcCCCcEEEEcC---CCCEEEEcCCCc
Confidence 67999999999999999999999999998877 5899999999874 68999999999998 499999999999
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCchh
Q 009667 161 YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASD 240 (529)
Q Consensus 161 ~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~ 240 (529)
|+.+...++.+.|++||++||++|.+++++|||||+||||++|||++++|+ ++++|++..++++.+|+||++++++
T Consensus 75 ~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~----~i~~~l~~~~~~~~~V~iv~fd~~~ 150 (168)
T 3gqe_A 75 FNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQ----SLNHLLTALDTTDADVAIYCRDKKW 150 (168)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHH----HHHHHHHHHTTSCCEEEEEESCHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHH----HHHHHHHHCCCCCCeEEEEEcCHHH
Confidence 998876666789999999999999999999999999999999999999998 4566777777778899999999999
Q ss_pred HHHHHHHccc
Q 009667 241 TEIYKRLLPL 250 (529)
Q Consensus 241 ~~~y~~~l~~ 250 (529)
++.|++++.+
T Consensus 151 ~~~~~~~~~~ 160 (168)
T 3gqe_A 151 EMTLKEAVAR 160 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 15
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=2.5e-37 Score=291.36 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=136.8
Q ss_pred CCCEEEEEEcCCcc----ccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEeccCCCCCC
Q 009667 81 INSKIYLWRGNPWN----LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVTNAYDLPAR 151 (529)
Q Consensus 81 ~n~~I~i~~GDI~~----~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT~~~~L~~k 151 (529)
.+.+|.+|+||||+ +++|||||+||++|.+|+| ++||+++||++|++||+++ ++|++|++++|++|+|
T Consensus 36 ~~~~i~l~~GDIt~~~~~~~vDAIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~~~~L--- 112 (193)
T 3ejg_A 36 VHDNVAFYQGDVDTVVNGVDFDFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL--- 112 (193)
T ss_dssp EETTEEEEECCHHHHHHHCCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEEETTE---
T ss_pred CCCeEEEEeCcccccCcCCCcCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEecCCCe---
Confidence 56899999999999 8999999999999998887 5899999999999999875 8999999999999999
Q ss_pred eEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEE
Q 009667 152 RVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAV 231 (529)
Q Consensus 152 ~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V 231 (529)
+|||||||.|+. ..++.|++||++||+. .+|||||+||||++|||++++|++|++++++ .+|
T Consensus 113 ~VIHtVGP~~~~----~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~---------~~V 174 (193)
T 3ejg_A 113 RIFNVVGPRKGK----HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNT---------KEV 174 (193)
T ss_dssp EEEEEECCCSST----THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCS---------SCE
T ss_pred eEEEecCCCCCc----hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc---------CeE
Confidence 999999999964 3568999999999983 3799999999999999999999999999987 379
Q ss_pred EEEecCchhHHHHHHHcc
Q 009667 232 VFCTTTASDTEIYKRLLP 249 (529)
Q Consensus 232 ~fv~~~~~~~~~y~~~l~ 249 (529)
+||+|+++++++|+++|.
T Consensus 175 ~fv~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 175 KVFVYTDTEVCKVKDFVS 192 (193)
T ss_dssp EEEECSHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHHhc
Confidence 999999999999999864
No 16
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=5e-36 Score=280.42 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=140.9
Q ss_pred CCCCCCCcccccCCCCEEEEEEcCCccc----cccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCC
Q 009667 68 GNGMVSRFPVDHEINSKIYLWRGNPWNL----EVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTG 138 (529)
Q Consensus 68 ~~~~~~~f~~~~~~n~~I~i~~GDI~~~----~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G 138 (529)
+.+...||.. +.+|.+++|||+++ ++|||||+||++|.+|+| ++||++++|++|++||+++ ++|++|
T Consensus 6 ~~~~~~pf~~----~~~i~i~~GDIt~~~~~~~~DaIVNaaN~~l~~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G 81 (174)
T 2vri_A 6 AAPFTKPFAV----YKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVG 81 (174)
T ss_dssp TTEECCCSEE----ETTEEEEESCHHHHTTTSCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTT
T ss_pred CCCcCCccCC----CCeEEEEeccccccccCCCccEEEECCCccCCCCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCC
Confidence 3445666765 57899999999999 999999999999999887 5899999999999999874 899999
Q ss_pred CEEEeccCCCCCCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHH
Q 009667 139 MAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 218 (529)
Q Consensus 139 ~~~vT~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~ 218 (529)
++++|++++| ||||+|||.|... ..+.|++||++||+. + +|||||+||||++|||++++|++|+++++
T Consensus 82 ~a~iT~~~~l---~VIH~vgP~~~~~----~~~~L~~~y~~~L~~---~--~SIAfP~IstG~~g~p~~~aa~i~~~~v~ 149 (174)
T 2vri_A 82 AGVMLECEKF---NVFNVVGPRTGKH----EHSLLVEAYNSILFE---N--GIPLMPLLSCGIFGVRIENSLKALFSCDI 149 (174)
T ss_dssp CEEEEECSSC---EEEEEECCCSSTT----HHHHHHHHHHHHHHS---S--SCEEEECSSCGGGCCCHHHHHHHHHTSCC
T ss_pred eEEEEECCCC---EEEEEcCCCCCcc----hHHHHHHHHHHHHhh---C--CcEEeCccccCCCCCCHHHHHHHHHHHHh
Confidence 9999999998 9999999999532 468999999999985 3 49999999999999999999999999997
Q ss_pred HHHHHcCCCccEEEEEecCchhHHHHHHHcc
Q 009667 219 RFLEKQKDKISAVVFCTTTASDTEIYKRLLP 249 (529)
Q Consensus 219 ~fl~~~~~~i~~V~fv~~~~~~~~~y~~~l~ 249 (529)
+ ++|+|++|+++++++|+++|+
T Consensus 150 ~---------~~V~~v~f~~~~~~~~~~~l~ 171 (174)
T 2vri_A 150 N---------KPLQVFVYSSNEEQAVLKFLD 171 (174)
T ss_dssp C---------SCEEEEECSHHHHHHHHHHHH
T ss_pred h---------CcEEEEEcCHHHHHHHHHHHh
Confidence 6 579999999999999999884
No 17
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=5.6e-35 Score=272.00 Aligned_cols=155 Identities=13% Similarity=0.160 Sum_probs=133.0
Q ss_pred cccCCCCEEEEEEcCCcccccc--------EEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHh----CCCCCCCEEEe
Q 009667 77 VDHEINSKIYLWRGNPWNLEVD--------TVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATL----GGCRTGMAKVT 143 (529)
Q Consensus 77 ~~~~~n~~I~i~~GDI~~~~~D--------aIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~----~~~~~G~~~vT 143 (529)
.....+.+|++|+||||++++| ||||+||++|.+||| ++||+++||++|++||+++ |+|+ +++|
T Consensus 8 ~~~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT 84 (176)
T 3ejf_A 8 CEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVT 84 (176)
T ss_dssp --CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCCCCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEE
T ss_pred ccCCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeec
Confidence 3455778999999999999765 599999999998887 5899999999999999886 7887 9999
Q ss_pred ccCCCCCCeEEEEcCCCcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 009667 144 NAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 223 (529)
Q Consensus 144 ~~~~L~~k~IIH~VgP~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~ 223 (529)
.|++|++++|||||||.|..+ ..++.|++||++||+ ++++|||||+||||++|||++++|++|+++++.
T Consensus 85 ~G~~l~t~~VIHtVGP~~~~~---~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~---- 153 (176)
T 3ejf_A 85 PSFVKGIQCVNNVVGPRHGDN---NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG---- 153 (176)
T ss_dssp CCCSTTEEEEEEECCCCTTCS---CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT----
T ss_pred ccccccCCEEEEeCCCCCCCc---cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh----
Confidence 999999999999999999653 246799999999998 999999999999999999999999999999983
Q ss_pred cCCCccEEEEEecCchhHHHHHHHc
Q 009667 224 QKDKISAVVFCTTTASDTEIYKRLL 248 (529)
Q Consensus 224 ~~~~i~~V~fv~~~~~~~~~y~~~l 248 (529)
..-+|++..++.+.+++|+.++
T Consensus 154 ---~~v~v~~~~~D~e~~~~~~~~~ 175 (176)
T 3ejf_A 154 ---CTIRVLLFSLSQEHIDYFDVTC 175 (176)
T ss_dssp ---CCCEEEEEESCHHHHHHHHHTC
T ss_pred ---cceEEEEEcCCHHHHHHHHHHh
Confidence 1223444455578888888764
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=100.00 E-value=3.5e-35 Score=292.90 Aligned_cols=173 Identities=11% Similarity=0.061 Sum_probs=148.1
Q ss_pred CCEEEEEEcCCccc-------------cccEEEEcCCcCCCCCCc-hHHHHHhhC-hhHHHHHHHh---CCCCCCCEEEe
Q 009667 82 NSKIYLWRGNPWNL-------------EVDTVVNSTNENLDEAHS-SPGLHAAAG-PGLAEECATL---GGCRTGMAKVT 143 (529)
Q Consensus 82 n~~I~i~~GDI~~~-------------~~DaIVNsaN~~l~~~~g-~~aI~~~aG-~~l~~e~~~~---~~~~~G~~~vT 143 (529)
+.+|.+++|||+++ ++|||||+||+.+.+||| ++||++++| +.+++||+++ |.|++|++++|
T Consensus 44 ~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~~gGGVd~AI~raaGg~~l~~ec~~~~~~g~~~~G~a~iT 123 (284)
T 1njr_A 44 DKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVV 123 (284)
T ss_dssp -CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCCCCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEEE
T ss_pred CCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCCCCchHHHHHHHhhCcHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 56899999999999 899999999999998887 589999975 7889999884 78999999999
Q ss_pred ccC----------CCCCCeEEEEcCCCcCCcc--hh-----hHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCCh
Q 009667 144 NAY----------DLPARRVIHTVGPKYAVKY--HT-----AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPR 206 (529)
Q Consensus 144 ~~~----------~L~~k~IIH~VgP~~~~~~--~~-----~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~ 206 (529)
.+| +||||||||||||.|..+. .. ...+.|++||++||+.| +++++|||||+||||++|||+
T Consensus 124 ~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~ 202 (284)
T 1njr_A 124 DLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPP 202 (284)
T ss_dssp EGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCH
T ss_pred ECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCH
Confidence 999 9999999999999997652 11 23578999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCCCChhhHHHHh
Q 009667 207 EPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPRDKHEEEVAI 263 (529)
Q Consensus 207 ~~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr~~~e~~~~~ 263 (529)
+++|++|+++++.|+.+++. .++.|+||.+ +.+ ...|++.+..||..++
T Consensus 203 ~~aA~i~~~av~~f~~~~~~s~~~~~~vi~~~~-~~~-------~~~~~~~~~~ee~~~~ 254 (284)
T 1njr_A 203 IISCKSMAFALRLYMAGDHISKELKNVLIMYYL-QYP-------FEPFFPESCKIECQKL 254 (284)
T ss_dssp HHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHT-TCC-------CGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccceEEEEEEC-HHH-------HHHHHhhhHHHHHHHh
Confidence 99999999999999987652 2345666655 444 4557888888877665
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.97 E-value=4.1e-32 Score=283.58 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=139.9
Q ss_pred EEEEEEcCCccccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcCCCcC
Q 009667 84 KIYLWRGNPWNLEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYA 162 (529)
Q Consensus 84 ~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~VgP~~~ 162 (529)
.+.|++||||+.++|||||+||++|.+||| ++|||++||+++.+ +.|++|++++|.++ +|||||||||.|+
T Consensus 345 sfrIIRgDITk~~vDAIVNAANtsL~gGgGVdGAIhraaG~~ll~-----~~~~tG~AkIT~g~---aKyIIHtVGPvw~ 416 (670)
T 4gua_A 345 SYRTKRENIADCQEEAVVNAANPLGRPGEGVCRAIYKRWPTSFTD-----SATETGTARMTVCL---GKKVIHAVGPDFR 416 (670)
T ss_dssp CEEEECSCGGGCCSSEEEEECCTTCCCCSSHHHHHHHHCGGGGTT-----CCCCTTCEEEEEET---TEEEEEECCCCTT
T ss_pred ceeEEeccccccccCEEEeCCCCCCCCcCCHhHHHHHHhhHHHhc-----CCCCcceEEEecCC---CceEEEcCCCCcc
Confidence 567999999999999999999999999887 59999999999864 68999999999999 6999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCchhHH
Q 009667 163 VKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTASDTE 242 (529)
Q Consensus 163 ~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~~~~~ 242 (529)
++...+..++|++||+++|++|.+++++|||||+||||++|||++ .++++++++..||+.+. -+|++++++.+...
T Consensus 417 ~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D---~dV~IvcfDKkwe~ 492 (670)
T 4gua_A 417 KHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTD---ADVTIYCLDKKWKE 492 (670)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSS---CEEEEECSCHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccC---CEEEEEEecChHHH
Confidence 988777668999999999999999999999999999999999987 58999999999998764 37999999887777
Q ss_pred HHHHHcc
Q 009667 243 IYKRLLP 249 (529)
Q Consensus 243 ~y~~~l~ 249 (529)
.++..+.
T Consensus 493 ~Ik~ai~ 499 (670)
T 4gua_A 493 RIDAALQ 499 (670)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 20
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.94 E-value=1.7e-27 Score=236.14 Aligned_cols=144 Identities=17% Similarity=0.242 Sum_probs=137.2
Q ss_pred CcCHHHHHHhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCCCEEEEEEcCCCCCCCCCCHHHHH
Q 009667 386 SLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMR 465 (529)
Q Consensus 386 ~~dl~~i~~~~~~y~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~~~~~viV~D~tg~s~~~~~~l~~lk 465 (529)
.+|+++|+++++||++|.|++|||||+++++++++...|+|.|++|++++++.++.++|.+|||||+++..+.|+.+|++
T Consensus 1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n~p~~~wl~ 80 (256)
T 3pg7_A 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLS 80 (256)
T ss_dssp CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHH
T ss_pred CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCcccCCcHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhcccceEEEEcCChhhHHHHHhh-hhcccccccccEEEECCHhHHhccCCCCCCC
Q 009667 466 RLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTL-QLLVDNVVWKKVVYVDRLLQLFRYVPRMIWK 529 (529)
Q Consensus 466 k~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~-~~fls~k~~~KI~~~~~leeL~~~Ip~e~L~ 529 (529)
++++++|+++++||+++||||||+|++.+++.+ ++|.+.++++|++|++++++|.++||+++|.
T Consensus 81 ~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~~L~ 145 (256)
T 3pg7_A 81 KWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQK 145 (256)
T ss_dssp HTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGGGCC
T ss_pred HHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHHHcC
Confidence 999999999999999999999999999887765 6667779999999999999999999999874
No 21
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=229.60 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhCCc---CHHHHHHhcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCCCEEEEEEc
Q 009667 374 YSLHSRYLAKANSL---NLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFH 450 (529)
Q Consensus 374 ~~~~~~~l~~a~~~---dl~~i~~~~~~y~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~~~~~viV~D~ 450 (529)
...|++||+|++.. ++++|+..+++|++|.|++||||||+++++++...+|+|.+++|++++++++..++|++||||
T Consensus 5 ~~~~~efM~r~~~~~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~~~~y~lV~D~ 84 (290)
T 3peg_A 5 SSKFEEFMTRHQVHEKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPYEIVVDL 84 (290)
T ss_dssp -------------------CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTTSCEEEEEEC
T ss_pred hHHHHHHHHHhhccChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 34678999999854 566677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHH-hhhhcccccccccEEEECCHhHHhccCCCCCCC
Q 009667 451 SAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIF-TLQLLVDNVVWKKVVYVDRLLQLFRYVPRMIWK 529 (529)
Q Consensus 451 tg~s~~~~~~l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~-~~~~fls~k~~~KI~~~~~leeL~~~Ip~e~L~ 529 (529)
|+++..+.|+.+|++++++++|+++++||+++||+|||+|++.+++ ++++|.+.+..+|++|++++.+|.+++++++++
T Consensus 85 T~~~~~n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L~~~i~~~~~~ 164 (290)
T 3peg_A 85 THTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQK 164 (290)
T ss_dssp TTCCGGGCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC-----------
T ss_pred CCCCccCCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHHHhhCCHHHhc
Confidence 9999999999999999999999999999999999999999999874 668888999999999999999999999999764
No 22
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.92 E-value=4.7e-25 Score=203.30 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=115.1
Q ss_pred CCCEEEEEEcCCcccc-ccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcC
Q 009667 81 INSKIYLWRGNPWNLE-VDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVG 158 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~-~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~Vg 158 (529)
.+.+|++++|||++.+ +|||||++|+++.+|+| +++|++++| ++ .||.+ +.+++|++++|.++ ++||||+||
T Consensus 18 ~~~~i~~v~GDIt~~~~~daIVnaaN~~~~~GgGVa~ai~~~~p-~~-~e~~~-~~~~~G~a~it~~~---~~~Vih~vg 91 (160)
T 2jyc_A 18 EGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFG-GV-QELLN-QQKKSGEVAVLKRD---GRYIYYLIT 91 (160)
T ss_dssp CSCSEEEEESCSSSSCSSCEEEEEECTTCCCCSSTHHHHHHHHC-CH-HHHHH-HCCCTTCEEEEEET---TEEEEEEEC
T ss_pred CCceEEEEeCcCCCCCCCCEEEEccCCcCCCCCcHHHHHHHHCh-HH-HHHhc-cCCCCCcEEEEecC---CcEEEEEec
Confidence 4678999999999998 79999999999999877 589999995 45 68876 68999999999985 799999999
Q ss_pred CC-cCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHH
Q 009667 159 PK-YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (529)
Q Consensus 159 P~-~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~ 219 (529)
|. |.... ..+.|++||+++++.|.+++++|||||+||||++|+|+++++++|.+++.+
T Consensus 92 ~~~~~~~~---~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 92 KKRASHKP---TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp SSSTTSCC---CHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCC---hHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 98 65422 257899999999999999999999999999999999999999998887654
No 23
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.92 E-value=3.2e-25 Score=202.46 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=114.4
Q ss_pred CCCEEEEEEcCCcccc-ccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHHHhCCCCCCCEEEeccCCCCCCeEEEEcC
Q 009667 81 INSKIYLWRGNPWNLE-VDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVG 158 (529)
Q Consensus 81 ~n~~I~i~~GDI~~~~-~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~~~~~~~~G~~~vT~~~~L~~k~IIH~Vg 158 (529)
.+.+|++++|||++.+ +|||||++|+++.+|+| +++|++++ |++ .||.+ +.+++|++++|.++ ++||||++|
T Consensus 7 ~~~~i~~v~GDIt~~~~~daIVnaaN~~~~~G~Gva~ai~~~~-p~~-~~~~~-~~~~~G~a~it~~~---~~~Vih~v~ 80 (149)
T 2eee_A 7 GGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKF-GGV-QELLN-QQKKSGEVAVLKRD---GRYIYYLIT 80 (149)
T ss_dssp SSCCCEEECSCSSSSCSSCEEEEEEETTCCCCSTTHHHHHHHT-CCH-HHHHT-TCCCTTCEEEEESS---SSEEEEEEE
T ss_pred CCeeEEEEecccccCCCCcEEEEEeCCCCCcCCcHHHHHHHHC-cHH-HHHhc-ccCCCccEEEEEcC---CCEEEEEEe
Confidence 4578999999999998 79999999999998876 58999888 555 67765 68999999999985 799999999
Q ss_pred CC-cCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHH
Q 009667 159 PK-YAVKYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRR 219 (529)
Q Consensus 159 P~-~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~ 219 (529)
|. |.... ..+.|++||+++|+.|.+++++|||||+||||++|+|+++++++|.+++.+
T Consensus 81 ~~~~~~~~---~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~ 139 (149)
T 2eee_A 81 KKRASHKP---TYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 139 (149)
T ss_dssp ESSTTSCC---CHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCC---CHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 98 65422 257899999999999999999999999999999999999999998887653
No 24
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.90 E-value=1.9e-23 Score=192.63 Aligned_cols=132 Identities=13% Similarity=0.063 Sum_probs=113.0
Q ss_pred CEEEEEEcCCcc---ccccEEEEcCCcCCCCCCc-hHHHHHhhChhHHHHHH----HhCCCCCCCEEEeccCCCCCCeEE
Q 009667 83 SKIYLWRGNPWN---LEVDTVVNSTNENLDEAHS-SPGLHAAAGPGLAEECA----TLGGCRTGMAKVTNAYDLPARRVI 154 (529)
Q Consensus 83 ~~I~i~~GDI~~---~~~DaIVNsaN~~l~~~~g-~~aI~~~aG~~l~~e~~----~~~~~~~G~~~vT~~~~L~~k~II 154 (529)
+.|.+++|||++ .++|||||++|+.+.+|+| +++|++++ |+++++|+ +.+.+++|++++|+++ ..+|||
T Consensus 4 M~i~~v~GDit~~~~~~~daIvn~~N~~~~~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~~--~~~~Vi 80 (158)
T 2fg1_A 4 MEILYIKGDATAPIGSGVKVITHICNDIGGWGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNVE--NKLYVA 80 (158)
T ss_dssp CCCEEEESCTTSCCSSSCEEEEEEEETTCCCCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEEE--TTEEEE
T ss_pred eEEEEEecccCCCCCCCCeEEEEEecCCCCcCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEecC--CCeEEE
Confidence 479999999999 7899999999999999887 58998888 78877755 4679999999999984 249999
Q ss_pred EEcCCC-cCCcchh---hHHHHHHHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHH
Q 009667 155 HTVGPK-YAVKYHT---AAENALSHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVR 218 (529)
Q Consensus 155 H~VgP~-~~~~~~~---~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~ 218 (529)
|+++|. |..+... ...+.|++||+++++.|.+++. |||||.||||++|+|++++++++.+++.
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l~ 147 (158)
T 2fg1_A 81 NMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEELI 147 (158)
T ss_dssp EEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred EEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHhc
Confidence 999998 7544311 2357899999999999999997 9999999999999999999998766654
No 25
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.85 E-value=7.3e-22 Score=201.94 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=127.6
Q ss_pred HHHHHHhcceE-ecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCC------CEEEEEEcCCCCCCC--CC
Q 009667 389 LSEIAEMKIVY-RGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQK------PYSIVYFHSAASLQL--QP 459 (529)
Q Consensus 389 l~~i~~~~~~y-~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~~~------~~viV~D~tg~s~~~--~~ 459 (529)
+.++.+.|+++ ..|+|++||||+++++++++++.++.+++++++++.+|..+.+ .+++|+|++|+++.+ .+
T Consensus 135 i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~ 214 (316)
T 3hx3_A 135 VRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASL 214 (316)
T ss_dssp HHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC
T ss_pred HHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccC
Confidence 45556778865 4599999999999999999999999999999999999987753 599999999999864 36
Q ss_pred CHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEE-CCHhHHhccCCCCCC
Q 009667 460 DLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYV-DRLLQLFRYVPRMIW 528 (529)
Q Consensus 460 ~l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~-~~leeL~~~Ip~e~L 528 (529)
+++++|+++.+++.+||+||+.+||||+|++|.++|++++||+++++++||+++ +++++|+++||+++|
T Consensus 215 ~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~L 284 (316)
T 3hx3_A 215 RTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENIL 284 (316)
T ss_dssp CHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGS
T ss_pred ChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhC
Confidence 888999999999999999999999999999999999999999999999999999 578999999999987
No 26
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.84 E-value=6.9e-21 Score=188.97 Aligned_cols=140 Identities=11% Similarity=0.116 Sum_probs=126.2
Q ss_pred CHHHHHHhcce-EecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCC------CEEEEEEcCCCCCCC--C
Q 009667 388 NLSEIAEMKIV-YRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQK------PYSIVYFHSAASLQL--Q 458 (529)
Q Consensus 388 dl~~i~~~~~~-y~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~~~------~~viV~D~tg~s~~~--~ 458 (529)
++.++.+.|++ +..|+|++||||++++.++++++.++.+++++++++++|..+.+ .+++|+|++|+++.+ .
T Consensus 75 ~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~ 154 (262)
T 1r5l_A 75 SIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQ 154 (262)
T ss_dssp GTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHH
T ss_pred HHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhc
Confidence 45566677875 45699999999999999999999999999999999999876653 499999999999874 4
Q ss_pred CCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECC--HhHHhccCCCCCC
Q 009667 459 PDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPRMIW 528 (529)
Q Consensus 459 ~~l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~--leeL~~~Ip~e~L 528 (529)
++++++|+++.+++.+||+||+.+||||+|++|.++|++++||+++++++||+|+.+ .++|.++|| ++|
T Consensus 155 ~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~L 225 (262)
T 1r5l_A 155 ITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DIL 225 (262)
T ss_dssp CCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTS
T ss_pred cCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhC
Confidence 678999999999999999999999999999999999999999999999999999954 799999999 987
No 27
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.81 E-value=7.2e-20 Score=185.27 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=118.4
Q ss_pred HHHHhcceEecccCCCCCcEEEEEcccccCCC----CCHHHHHHHHHHHhhhhc--------------CCCEEEEEEcCC
Q 009667 391 EIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEPLI--------------QKPYSIVYFHSA 452 (529)
Q Consensus 391 ~i~~~~~~y~~G~D~~GRpViv~~~~~~~~~~----~d~e~ll~y~i~~le~~~--------------~~~~viV~D~tg 452 (529)
.+.+....+..|+|++||||++++.++++++. .+.++++++++..+|.++ .+.+++|+|++|
T Consensus 99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g 178 (296)
T 1aua_A 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 178 (296)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCC
Confidence 33333334567999999999999999998754 588999999888777432 245999999999
Q ss_pred CCCCCCCC-HHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECC--HhHHhccCCCCCC
Q 009667 453 ASLQLQPD-LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPRMIW 528 (529)
Q Consensus 453 ~s~~~~~~-l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~--leeL~~~Ip~e~L 528 (529)
+++.+.+. .+++|++..+++.+||+||+.+||||+|++|.++|++++|||++++++||+|+.+ .++|.++||+++|
T Consensus 179 ~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L 257 (296)
T 1aua_A 179 ISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 257 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhC
Confidence 99875433 6899999999999999999999999999999999999999999999999999965 7889999999987
No 28
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.79 E-value=1.6e-19 Score=184.86 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=118.8
Q ss_pred HHHhcceEecccCCCCCcEEEEEcccccCCC----CCHHHHHHHHHHHhhhhc--------------CCCEEEEEEcCCC
Q 009667 392 IAEMKIVYRGGVDSEGRPVMVVVGAHFLLRC----LDLERFVLYVVKEFEPLI--------------QKPYSIVYFHSAA 453 (529)
Q Consensus 392 i~~~~~~y~~G~D~~GRpViv~~~~~~~~~~----~d~e~ll~y~i~~le~~~--------------~~~~viV~D~tg~ 453 (529)
+.+.+..|..|+|++||||++++.++++++. .+.++++++++..+|.++ .+..++|+|++|+
T Consensus 115 ~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~ 194 (320)
T 3q8g_A 115 LAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGI 194 (320)
T ss_dssp HHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred HHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCC
Confidence 3445556777999999999999999998865 378888888887777543 2457999999999
Q ss_pred CCCCCCC-HHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECC--HhHHhccCCCCCC
Q 009667 454 SLQLQPD-LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPRMIW 528 (529)
Q Consensus 454 s~~~~~~-l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~--leeL~~~Ip~e~L 528 (529)
++.+.+. ++++|++..+++.+||+||+.+||||+|++|+++|++++|||++++++||+|+.+ .++|.++||+++|
T Consensus 195 sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L 272 (320)
T 3q8g_A 195 SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENL 272 (320)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGS
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhC
Confidence 9875432 7889999999999999999999999999999999999999999999999999965 6899999999987
No 29
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.77 E-value=8.9e-19 Score=184.82 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=117.1
Q ss_pred ecccCCCCCcEEEEEcccccCC----CCCHHHHHHHHHHHhhhhc-------------CCCEEEEEEcCCCCCCCC--CC
Q 009667 400 RGGVDSEGRPVMVVVGAHFLLR----CLDLERFVLYVVKEFEPLI-------------QKPYSIVYFHSAASLQLQ--PD 460 (529)
Q Consensus 400 ~~G~D~~GRpViv~~~~~~~~~----~~d~e~ll~y~i~~le~~~-------------~~~~viV~D~tg~s~~~~--~~ 460 (529)
..|+|++||||++++.++++++ ..+.+++++++++.+|..+ .+.+++|+|++|+++.+. +.
T Consensus 88 ~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~ 167 (403)
T 1olm_A 88 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPA 167 (403)
T ss_dssp EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHH
T ss_pred eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHH
Confidence 4589999999999999999986 5799999999999988553 256999999999998754 35
Q ss_pred HHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECC--HhHHhccCCCCCC
Q 009667 461 LGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDR--LLQLFRYVPRMIW 528 (529)
Q Consensus 461 l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~--leeL~~~Ip~e~L 528 (529)
+.++|+++.+++.+||+||+.+||||+|++|.++|++++|||++++++||+|+.+ .++|.++||+++|
T Consensus 168 ~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L 237 (403)
T 1olm_A 168 VEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237 (403)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred HHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence 7899999999999999999999999999999999999999999999999999964 6799999999987
No 30
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=98.76 E-value=2.4e-08 Score=98.73 Aligned_cols=167 Identities=10% Similarity=0.046 Sum_probs=110.5
Q ss_pred CCEEEEEEcCCccc---------cccEEEEcCCcCCCCCC---ch----HHHHHhhC--------hhHHHHHHH-hCCCC
Q 009667 82 NSKIYLWRGNPWNL---------EVDTVVNSTNENLDEAH---SS----PGLHAAAG--------PGLAEECAT-LGGCR 136 (529)
Q Consensus 82 n~~I~i~~GDI~~~---------~~DaIVNsaN~~l~~~~---g~----~aI~~~aG--------~~l~~e~~~-~~~~~ 136 (529)
..+|.++.+|-... .-=++.|.||..--.|| |+ .+|.+... ++....=+. ..++.
T Consensus 64 ~t~i~V~~~dtl~aA~~L~~~~~~~v~vLNfAs~~~PGGG~~~Ga~AQEE~Lcr~S~Ly~sL~~~~~~Y~~~~~~~~~~~ 143 (277)
T 3sig_A 64 PTRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEEGLARSSGLYASLRAVPQFYAFHHRQRDPLY 143 (277)
T ss_dssp -CEEEEESCCHHHHHHHHHHHCSSCCEEEEECCSSSTTTTGGGTCCSHHHHHHHHBSHHHHHTTCHHHHHHHHHHCCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHhcCCCeEEEecccccCCCCCcccCcchHHHHHHHhhhHHHHHhhhhhhhccccccCCCCC
Confidence 46899999987642 12378999988665444 22 24444332 111111001 12333
Q ss_pred CCCEEEecc--------CCCCC----CeEEEEcCCCcCC----cchhhHHHHHHHHHHHHHHHHHHhCCeeeeccccccC
Q 009667 137 TGMAKVTNA--------YDLPA----RRVIHTVGPKYAV----KYHTAAENALSHCYRSCLELLIENGLKSIAMGCIYTE 200 (529)
Q Consensus 137 ~G~~~vT~~--------~~L~~----k~IIH~VgP~~~~----~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P~i~tG 200 (529)
+..++.|+. +.|-. --||.++.|++.. ....+..+.|...++.+|..|.++|+++|++|++|||
T Consensus 144 ~~~~IySP~V~vfR~~~~~ll~~p~~v~vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCG 223 (277)
T 3sig_A 144 SDHLIYSPGVPVFRDDAGRLLEEPYRVAFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCG 223 (277)
T ss_dssp CSCEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSS
T ss_pred CCCeEECCCcEEEeCCCCccccCCceeEEEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 444444332 22211 1388899997742 1122346789999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcCCCccEEEEEecCc----hhHHHHHHHcc
Q 009667 201 AKNYPREPAAHVAIRTVRRFLEKQKDKISAVVFCTTTA----SDTEIYKRLLP 249 (529)
Q Consensus 201 ~~g~p~~~~a~i~l~~v~~fl~~~~~~i~~V~fv~~~~----~~~~~y~~~l~ 249 (529)
.||+|++++|+++.+.+...- .....+++|+|+++++ ..+++|++.+.
T Consensus 224 vfgnpp~~VA~~~~~vL~~~~-~f~~~f~~VvFAv~d~~~~~~n~~~F~~~F~ 275 (277)
T 3sig_A 224 VFGNDPAQVAETFAGLLLDGG-PFAGRFAHVVFAVWDTAPGAPRHAAFARRFG 275 (277)
T ss_dssp TTCCCHHHHHHHHHHHHSTTC-TTTTTCSEEEEECCCCSTTCHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHhhcc-hhcCCceEEEEEEecCCCcchHHHHHHHHHh
Confidence 999999999999999887421 1234789999999986 57888888764
No 31
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=45.43 E-value=2.9e+02 Score=28.98 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=69.3
Q ss_pred CEEEEEEcCCccccccEEEEcCCcCCCCCCchHHHHHhhChhHHHHHHHhC-CCCCCCEEEecc-CCCCCCeEEEEc-CC
Q 009667 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLG-GCRTGMAKVTNA-YDLPARRVIHTV-GP 159 (529)
Q Consensus 83 ~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g~~aI~~~aG~~l~~e~~~~~-~~~~G~~~vT~~-~~L~~k~IIH~V-gP 159 (529)
+++.+..++....+.|++|-..-+.....+....+-++.+..|.+-++..+ .-+.|++.+..+ ..++++.|+-+- |.
T Consensus 3 M~~~~~~~~~~~~~~d~lvv~v~~~~~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~~v~lvGlG~ 82 (490)
T 3jru_B 3 LQFTLNQDAPASAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAPRVLVVGLGD 82 (490)
T ss_dssp CEEEEECCCTTTCCSSEEEEEECTTSCBCHHHHHHHHHTTSHHHHHHHHTCSCCSTTCEEEEECCTTCSSSEEEEEECCC
T ss_pred eEEEEEcCCcccccCCEEEEEEeCCCccchhHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEccCCCCCccEEEEEecCC
Confidence 578888999999999999998755433222345666777777777666543 345788776653 446667766543 22
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeecc
Q 009667 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P 195 (529)
. ... ....++.+...+.+.+.+.+.+++++.
T Consensus 83 ~--~~~---~~~~~r~a~~~~~~~l~~~~~~~~~~~ 113 (490)
T 3jru_B 83 A--GKF---GVAPYLKAIGDATRALKTGAVGTALLT 113 (490)
T ss_dssp G--GGC---SHHHHHHHHHHHHHHHSSSSCSEEEEC
T ss_pred c--ccC---CHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 1 111 134677777777777777777875543
No 32
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=39.40 E-value=2.6e+02 Score=29.38 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=69.6
Q ss_pred CEEEEEEcCCccccccEEEEcCCcCCCCCCchHHHHHhhChhHHHHHHHhC-CCCCCCEEEecc-CCCCCCeEEEE-cCC
Q 009667 83 SKIYLWRGNPWNLEVDTVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLG-GCRTGMAKVTNA-YDLPARRVIHT-VGP 159 (529)
Q Consensus 83 ~~I~i~~GDI~~~~~DaIVNsaN~~l~~~~g~~aI~~~aG~~l~~e~~~~~-~~~~G~~~vT~~-~~L~~k~IIH~-VgP 159 (529)
+++.+..+++.+++.|++|-..-+..........+-++.+..+.+-++..+ .-+.|++.+... ..++++.|+-+ +|.
T Consensus 1 M~~~~~~~~~~~~~~d~lvv~v~~~~~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlG~ 80 (497)
T 3h8g_F 1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGK 80 (497)
T ss_dssp CEEEEECSCGGGCCBSCEEEEEEGGGCCCHHHHHHHHHTTTHHHHHHHTCCCCCCTTCEEEECCCTTCSBSCEEEEEEES
T ss_pred CEEEEEcCChhhccCCEEEEEEecCCccchHHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEcCCCCCCccEEEEEECCC
Confidence 367888899999999999987755433222345666777777776665533 345688877654 34566665543 232
Q ss_pred CcCCcchhhHHHHHHHHHHHHHHHHHHhCCeeeecc
Q 009667 160 KYAVKYHTAAENALSHCYRSCLELLIENGLKSIAMG 195 (529)
Q Consensus 160 ~~~~~~~~~~~~~L~~~~~~~L~~a~e~~~~SIa~P 195 (529)
. .. .....++.+...+.+.+.+.+.+++++.
T Consensus 81 ~--~~---~~~~~~r~a~~~~~~~l~~~~~~~~~~~ 111 (497)
T 3h8g_F 81 D--EA---LGDRTWRKLVASVAGVLKGLNGADAVLA 111 (497)
T ss_dssp S--SC---BCHHHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred c--cc---CCHHHHHHHHHHHHHHHhhCCCceEEEe
Confidence 1 11 1235678888888888888898876654
No 33
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=34.20 E-value=55 Score=30.88 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 009667 174 SHCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 223 (529)
Q Consensus 174 ~~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~ 223 (529)
...++++++.|.+.|++.+.+=+.||+++.=|.+++ ..+++-+++++..
T Consensus 33 ~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev-~~Lm~l~~~~l~~ 81 (227)
T 2vg0_A 33 AAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDEL-AALIEIITDVVEE 81 (227)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHH-HHHHHHHHHHHHH
Confidence 467788888899999999999999999999999988 5666777777775
No 34
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=27.97 E-value=1.1e+02 Score=25.64 Aligned_cols=114 Identities=7% Similarity=-0.039 Sum_probs=63.5
Q ss_pred hcceEecccCCCCCcEEEEEcccccCCCCCHHHHHHHHHHHhhhhcCCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHhHH
Q 009667 395 MKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRK 474 (529)
Q Consensus 395 ~~~~y~~G~D~~GRpViv~~~~~~~~~~~d~e~ll~y~i~~le~~~~~~~viV~D~tg~s~~~~~~l~~lkk~~~~l~~~ 474 (529)
.|+++..-.+..+.-+-+-..+.+.. -|++.++..+-..++..-...+-+++|++.+.. +++.-+..-+. +...
T Consensus 7 ~~~mi~i~~~~~~~vl~v~~~G~lt~--~d~~~l~~~l~~~l~~~~~~~i~ll~~~~~f~G---~~~~a~~~d~k-~~~~ 80 (126)
T 2q3l_A 7 HGIAIGIERSQDDFYLAFKAVGKLTH--EDYEQMTPLLESALAGIKTPEIVALIDITELDG---LSLHAAWDDLK-LGLK 80 (126)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEECH--HHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEEE---ECHHHHHHHHH-HHHH
T ss_pred cceeEEEEEcCCCCEEEEEEEeeECH--HHHHHHHHHHHHHHHhCCCceEEEEEEecCCCC---CCHHHHHHHHH-hhhh
Confidence 34544433333333333444455532 234444443333344333333888888765421 23333222222 2346
Q ss_pred hhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECCHhH
Q 009667 475 HQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQ 518 (529)
Q Consensus 475 ~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~lee 518 (529)
+...+..+=||--+.|.+...++..+|++.. |++.+..++
T Consensus 81 h~~~~~RiAvV~d~~W~~~~~~~~~~~~~~e----vk~F~~~~~ 120 (126)
T 2q3l_A 81 HGKEFKRVAIIGQGELQEWATRVANWFTPGE----FKFFEDKRD 120 (126)
T ss_dssp HGGGEEEEEEECCSHHHHHHHHHHHHHCSSE----EEEESCHHH
T ss_pred HHhcCCEEEEEcChHHHHHHHHHHhhccCCc----eeccCCHHH
Confidence 6788999999999999999999999997654 555555544
No 35
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=26.47 E-value=1.6e+02 Score=25.38 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCC
Q 009667 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 205 p~~~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
+..+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+
T Consensus 63 d~~~Qt~~~l~ni~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~ 114 (143)
T 3k0t_A 63 GIEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIMGSYFS 114 (143)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCChHHEEEEEEEEcChHHHHHHHHHHHHHcC
Confidence 4556666677777777776553 344555556677889999999999997
No 36
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=25.76 E-value=1.6e+02 Score=24.47 Aligned_cols=50 Identities=8% Similarity=0.161 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCCC
Q 009667 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
+..+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+.
T Consensus 45 d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~v~~~~f~~ 97 (125)
T 3l7q_A 45 TIEEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKS 97 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCC
Confidence 4555666666666666666543 3445555566778899898888889974
No 37
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=23.38 E-value=2.1e+02 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCeeeeccccccCCCCCChHHHHHHHHHHHHHHHHH
Q 009667 175 HCYRSCLELLIENGLKSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEK 223 (529)
Q Consensus 175 ~~~~~~L~~a~e~~~~SIa~P~i~tG~~g~p~~~~a~i~l~~v~~fl~~ 223 (529)
..++++++.|.+.|++.+.+=++||.++.=|.+++... ++-+++++.+
T Consensus 37 ~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~L-m~L~~~~l~~ 84 (225)
T 3ugs_B 37 KTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFI-FELLDRCLDE 84 (225)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHH-HHHHHHHHHH
Confidence 45677788888999999999999999999999887654 3444555543
No 38
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=22.97 E-value=52 Score=30.07 Aligned_cols=65 Identities=20% Similarity=0.175 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhH-HhhcccceEEEEcCChhhHHHHHhh-----hhcccccccccEEEECCHhHHhccCCC
Q 009667 461 LGWMRRLQQVLGR-KHQRNLHAIYVLHPTFHLKATIFTL-----QLLVDNVVWKKVVYVDRLLQLFRYVPR 525 (529)
Q Consensus 461 l~~lkk~~~~l~~-~~p~rLk~iyiVnp~~~~k~~~~~~-----~~fls~k~~~KI~~~~~leeL~~~Ip~ 525 (529)
..-|-.+++++-- .+-..=|-+.++|.+-+..-.+.++ ..|++++-.+.+++.++.+++.++|.|
T Consensus 119 ~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~ee~~~~l~~ 189 (189)
T 3sbx_A 119 VGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHhcC
Confidence 3344455554421 1112347899999964545555554 358888888999999999999988764
No 39
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=21.49 E-value=1.8e+02 Score=24.49 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCCC
Q 009667 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
+..+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+.
T Consensus 42 d~~~Q~~~~l~nl~~~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 94 (128)
T 3kjj_A 42 TAAEQTADVLAQIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAA 94 (128)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhCC
Confidence 4566777788888888887653 4445555566778888888888888874
No 40
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=21.20 E-value=2e+02 Score=23.79 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCCC
Q 009667 205 PREPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 205 p~~~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
+..+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+.
T Consensus 44 d~~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~~f~~ 96 (124)
T 1qd9_A 44 DIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDT 96 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcChHHHHHHHHHHHHHcCC
Confidence 4455566666666666666543 3445555566678888888888888873
No 41
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=20.78 E-value=2e+02 Score=23.85 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCCC
Q 009667 208 PAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFPR 254 (529)
Q Consensus 208 ~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfpr 254 (529)
+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+.
T Consensus 37 ~Q~~~~l~ni~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 86 (122)
T 3k12_A 37 DQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPE 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTSCT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHHHHhCC
Confidence 3344444444444444332 3445555566778899999999999974
No 42
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=20.53 E-value=1.8e+02 Score=24.76 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=41.0
Q ss_pred ecccCCCCCcEE---EEEcccccCCCCCHHHHHHHHHHHhhhhcCCCEEEEEEcCCC
Q 009667 400 RGGVDSEGRPVM---VVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYSIVYFHSAA 453 (529)
Q Consensus 400 ~~G~D~~GRpVi---v~~~~~~~~~~~d~e~ll~y~i~~le~~~~~~~viV~D~tg~ 453 (529)
..|+|..|.-++ |+-.+--.-+.++.+.+++|+-.+++..+.++|-+|=+..+.
T Consensus 29 VTGvD~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~~idas~~~~f~vV~~~e~a 85 (136)
T 1c76_A 29 VTGVDGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALDATAYKEFRVVELDPSA 85 (136)
T ss_dssp EEEECTTCCEEECCCCEEEECCTTCEECHHHHHHHHHHHHTTSTTTTEEEEEECTTC
T ss_pred EeeecCCCCEEeccccEEEecCcCceecHHHHHHHHHHHhhhhhcCceEEEecCCCc
Confidence 559999999877 232222223468999999999999999998999888776554
No 43
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=20.33 E-value=2e+02 Score=23.84 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCC---CccEEEEEecCchhHHHHHHHccccCC
Q 009667 206 REPAAHVAIRTVRRFLEKQKD---KISAVVFCTTTASDTEIYKRLLPLYFP 253 (529)
Q Consensus 206 ~~~~a~i~l~~v~~fl~~~~~---~i~~V~fv~~~~~~~~~y~~~l~~yfp 253 (529)
..+-++.+++.+..-|+.... .+-++.+.+.+..++..+.+....||+
T Consensus 49 ~~~Q~~~~l~ni~~~L~~ag~~l~~vvk~~vyl~d~~~~~~~~~v~~~~f~ 99 (127)
T 3r0p_A 49 FAVQAHQVFKNLRAVCEAAGGGLRDIVKLNVYLTDLANFPIVNEVMGQYFQ 99 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGEEEEEEEESCGGGHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 445555666666666666542 344555556677888888888888887
No 44
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.18 E-value=2.9e+02 Score=22.52 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=45.1
Q ss_pred CCEEEEEEcCCCCCCCCCCHHHHHHHHHHHhHHhhcccceEEEEcCChhhHHHHHhhhhcccccccccEEEECCHhHHhc
Q 009667 442 KPYSIVYFHSAASLQLQPDLGWMRRLQQVLGRKHQRNLHAIYVLHPTFHLKATIFTLQLLVDNVVWKKVVYVDRLLQLFR 521 (529)
Q Consensus 442 ~~~viV~D~tg~s~~~~~~l~~lkk~~~~l~~~~p~rLk~iyiVnp~~~~k~~~~~~~~fls~k~~~KI~~~~~leeL~~ 521 (529)
..-.+|+|+++++. .+.+-+.-+..+.. ...++=..+.+++++.-.+..+.... +.+.+.++.+.++-.+
T Consensus 51 ~~~~vvlDls~V~~---iDSsGl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~g------l~~~~~i~~s~~~Al~ 120 (125)
T 2ka5_A 51 GYNKIFLVLSDVES---IDSFSLGVIVNILK-SISSSGGFFALVSPNEKVERVLSLTN------LDRIVKIYDTISEAME 120 (125)
T ss_dssp TCCEEEEECTTCSC---CCHHHHHHHHHHHH-HHHHHTCEEEEECCCHHHHHHHHHTT------STTTSEEESSHHHHHT
T ss_pred CCCEEEEECCCCCE---EcHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHHHHcC------CCceEEecCCHHHHHH
Confidence 34579999999854 44444433333333 23344578999999998887776543 2223456777777655
Q ss_pred cCC
Q 009667 522 YVP 524 (529)
Q Consensus 522 ~Ip 524 (529)
.+.
T Consensus 121 ~~~ 123 (125)
T 2ka5_A 121 EVR 123 (125)
T ss_dssp TTT
T ss_pred Hhh
Confidence 543
Done!