Query 009668
Match_columns 529
No_of_seqs 382 out of 3101
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fc6_A Photosystem II D1 prote 100.0 1.4E-60 4.9E-65 502.9 46.0 371 142-517 3-386 (388)
2 1k32_A Tricorn protease; prote 100.0 1.7E-47 5.9E-52 448.0 24.9 347 140-522 656-1027(1045)
3 3k50_A Putative S41 protease; 100.0 3.1E-45 1.1E-49 385.9 25.8 288 223-522 73-395 (403)
4 3dor_A Protein CT_858, CPAF; m 100.0 2.2E-32 7.4E-37 293.7 32.6 351 143-522 6-556 (583)
5 1j7x_A IRBP, interphotorecepto 100.0 2E-31 6.9E-36 271.5 20.3 175 333-512 106-292 (302)
6 4fgm_A Aminopeptidase N family 99.7 3.2E-17 1.1E-21 180.7 13.3 180 111-312 373-565 (597)
7 2kom_A Partitioning defective 99.3 1.9E-12 6.6E-17 113.6 7.5 106 197-302 14-121 (121)
8 2koj_A Partitioning defective 99.3 4.8E-12 1.6E-16 109.0 7.6 100 203-302 1-102 (111)
9 2edz_A PDZ domain-containing p 99.2 7E-13 2.4E-17 115.0 -3.7 97 192-305 5-101 (114)
10 2byg_A Channel associated prot 99.1 3.1E-11 1.1E-15 105.3 5.9 101 199-302 12-115 (117)
11 2r4h_A Membrane-associated gua 99.1 1.2E-10 4.1E-15 100.6 7.9 100 197-302 10-110 (112)
12 1qau_A Neuronal nitric oxide s 99.1 2.1E-10 7.1E-15 98.8 8.5 87 221-311 10-97 (112)
13 2vz5_A TAX1-binding protein 3; 99.1 2.1E-10 7.2E-15 103.1 8.4 70 240-309 63-132 (139)
14 2jre_A C60-1 PDZ domain peptid 99.1 9.3E-11 3.2E-15 100.3 5.8 97 206-303 5-106 (108)
15 2jxo_A Ezrin-radixin-moesin-bi 99.1 1.3E-10 4.3E-15 97.7 5.5 92 201-302 3-94 (98)
16 2v90_A PDZ domain-containing p 99.0 1.5E-10 5.1E-15 96.8 5.2 79 224-304 14-92 (96)
17 2dm8_A INAD-like protein; PDZ 99.0 1.2E-10 4.2E-15 100.9 4.4 98 201-303 7-105 (116)
18 2w4f_A Protein LAP4; structura 99.0 3.6E-10 1.2E-14 94.5 7.2 81 222-303 12-95 (97)
19 1wfv_A Membrane associated gua 99.0 5.4E-11 1.9E-15 100.8 2.0 95 204-302 2-97 (103)
20 2pkt_A PDZ and LIM domain prot 99.0 2.8E-10 9.7E-15 94.2 6.2 77 224-304 13-89 (91)
21 1x5q_A LAP4 protein; PDZ domai 99.0 3.7E-10 1.3E-14 97.0 6.8 83 221-304 23-108 (110)
22 3b76_A E3 ubiquitin-protein li 99.0 3.7E-10 1.3E-14 98.6 6.9 100 199-300 12-112 (118)
23 1wg6_A Hypothetical protein (r 99.0 9E-11 3.1E-15 103.8 2.9 103 200-302 10-123 (127)
24 2he4_A Na(+)/H(+) exchange reg 99.0 1.1E-09 3.7E-14 90.4 8.8 74 224-302 15-88 (90)
25 2eaq_A LIM domain only protein 99.0 3.6E-10 1.2E-14 93.2 5.8 74 223-302 16-90 (90)
26 2pa1_A PDZ and LIM domain prot 99.0 8.4E-10 2.9E-14 90.5 7.8 75 224-302 12-86 (87)
27 2vsp_A PDZ domain-containing p 99.0 2.8E-10 9.6E-15 94.3 4.5 74 225-303 15-88 (91)
28 2dls_A PDZ-rhogef, RHO guanine 99.0 1.9E-09 6.6E-14 89.7 9.4 70 224-302 19-88 (93)
29 1g9o_A NHE-RF; PDZ domain, com 99.0 1.3E-09 4.6E-14 90.0 8.3 75 224-302 14-88 (91)
30 1n7e_A AMPA receptor interacti 99.0 9.2E-10 3.2E-14 92.2 7.3 76 224-303 16-92 (97)
31 3l4f_D SH3 and multiple ankyri 99.0 1.3E-09 4.4E-14 97.0 8.5 100 199-302 17-125 (132)
32 1uep_A Membrane associated gua 99.0 3.5E-10 1.2E-14 96.1 4.6 78 222-302 18-97 (103)
33 2kjp_A Uncharacterized protein 99.0 3.2E-10 1.1E-14 94.4 4.1 69 242-313 2-71 (91)
34 2yuy_A RHO GTPase activating p 99.0 1.1E-10 3.7E-15 103.1 1.2 95 201-302 26-121 (126)
35 2iwq_A Multiple PDZ domain pro 99.0 8.9E-10 3E-14 96.9 7.0 99 199-302 15-120 (123)
36 2l97_A HTRA, putative serine p 98.9 1.8E-09 6.2E-14 96.3 9.0 70 240-312 56-126 (134)
37 1d5g_A Human phosphatase HPTP1 98.9 2E-09 6.8E-14 89.9 8.7 78 224-302 16-94 (96)
38 2awx_A Synapse associated prot 98.9 1.4E-09 4.9E-14 92.5 7.9 86 224-310 14-102 (105)
39 1r6j_A Syntenin 1; PDZ, membra 98.9 9.9E-10 3.4E-14 89.6 6.5 66 223-299 15-80 (82)
40 3bpu_A Membrane-associated gua 98.9 2.2E-09 7.4E-14 88.2 8.7 73 224-302 14-87 (88)
41 1b8q_A Protein (neuronal nitri 98.9 4.2E-10 1.4E-14 99.2 4.6 86 221-310 17-103 (127)
42 2uzc_A Human pdlim5, PDZ and L 98.9 1.7E-09 5.7E-14 88.8 7.9 75 224-302 13-87 (88)
43 3i18_A LMO2051 protein; alpha- 98.9 3.2E-09 1.1E-13 89.7 9.7 69 240-311 6-75 (100)
44 3sfj_A TAX1-binding protein 3; 98.9 2.1E-09 7.3E-14 91.0 8.7 79 222-300 17-104 (104)
45 1v6b_A Harmonin isoform A1; st 98.9 7.5E-10 2.6E-14 96.5 5.8 98 200-300 3-106 (118)
46 2kl1_A YLBL protein; structure 98.9 1.3E-09 4.5E-14 91.1 7.1 71 240-313 4-75 (94)
47 2opg_A Multiple PDZ domain pro 98.9 1.8E-09 6.1E-14 90.5 7.9 78 224-304 15-93 (98)
48 1wh1_A KIAA1095 protein; PDZ d 98.9 6.8E-10 2.3E-14 97.6 5.5 83 220-305 28-111 (124)
49 2dmz_A INAD-like protein; PDZ 98.9 6.8E-10 2.3E-14 98.1 5.2 81 222-303 25-108 (129)
50 2db5_A INAD-like protein; PDZ 98.9 1E-09 3.5E-14 96.9 6.3 78 224-302 37-116 (128)
51 2q3g_A PDZ and LIM domain prot 98.9 1.7E-09 5.8E-14 89.1 7.2 75 224-302 13-87 (89)
52 1kwa_A Hcask/LIN-2 protein; PD 98.9 1.3E-09 4.4E-14 89.9 6.5 73 224-302 13-86 (88)
53 2jil_A GRIP1 protein, glutamat 98.9 9.9E-10 3.4E-14 91.9 5.9 79 224-303 14-94 (97)
54 2qkv_A Inactivation-NO-after-p 98.9 1.5E-09 5.3E-14 90.9 7.0 72 222-300 18-90 (96)
55 2djt_A Unnamed protein product 98.9 9.1E-10 3.1E-14 93.4 5.6 79 222-302 20-99 (104)
56 3ngh_A PDZ domain-containing p 98.9 7.9E-10 2.7E-14 94.1 5.1 63 240-303 25-87 (106)
57 2f5y_A Regulator of G-protein 98.9 2.3E-09 7.7E-14 88.8 7.6 71 224-302 14-84 (91)
58 2d90_A PDZ domain containing p 98.9 2.2E-09 7.5E-14 90.8 7.3 74 224-302 17-90 (102)
59 1ihj_A INAD; intermolecular di 98.9 1.6E-09 5.5E-14 90.8 6.3 78 224-302 17-98 (98)
60 1um1_A KIAA1849 protein, RSGI 98.9 6.2E-10 2.1E-14 95.5 3.8 83 224-307 19-102 (110)
61 1i16_A Interleukin 16, LCF; cy 98.9 1.4E-09 4.8E-14 96.4 6.2 79 223-301 39-118 (130)
62 1uez_A KIAA1526 protein; PDZ d 98.9 1.6E-09 5.6E-14 91.4 6.3 77 221-302 18-94 (101)
63 2iwo_A Multiple PDZ domain pro 98.9 4.1E-10 1.4E-14 98.6 2.6 80 224-304 36-116 (120)
64 4amh_A Disks large homolog 1; 98.9 7.3E-09 2.5E-13 88.4 10.3 85 224-309 13-103 (106)
65 3cyy_A Tight junction protein 98.9 3.4E-09 1.1E-13 87.6 7.9 67 242-309 24-91 (92)
66 1w9e_A Syntenin 1; cell adhesi 98.9 4.2E-09 1.4E-13 97.1 9.2 83 222-310 14-96 (166)
67 2kjd_A Sodium/hydrogen exchang 98.9 4.1E-10 1.4E-14 99.3 2.1 86 223-312 19-106 (128)
68 2iwn_A Multiple PDZ domain pro 98.9 2.2E-09 7.6E-14 89.4 6.5 81 221-302 12-94 (97)
69 2i04_A Membrane-associated gua 98.9 4.7E-09 1.6E-13 85.5 8.1 73 224-299 11-85 (85)
70 1wif_A RSGI RUH-020, riken cDN 98.9 2.1E-09 7E-14 95.0 6.2 74 221-300 35-110 (126)
71 2vwr_A Ligand of NUMB protein 98.9 3.7E-09 1.3E-13 88.1 7.4 74 224-302 16-90 (95)
72 2eeh_A PDZ domain-containing p 98.9 5.9E-09 2E-13 87.8 8.7 74 225-303 23-96 (100)
73 3r68_A Na(+)/H(+) exchange reg 98.9 2.7E-09 9.2E-14 88.8 6.5 74 224-302 16-89 (95)
74 3axa_A Afadin, nectin-3, prote 98.9 4.1E-09 1.4E-13 89.7 7.8 79 224-303 21-100 (106)
75 1rgw_A ZAsp protein; PDZ, cyph 98.9 4.3E-09 1.5E-13 85.7 7.5 74 224-301 11-84 (85)
76 2vsv_A Rhophilin-2; scaffold p 98.9 4.9E-09 1.7E-13 90.2 8.2 71 224-301 34-104 (109)
77 1wf7_A Enigma homologue protei 98.9 7.1E-10 2.4E-14 94.0 2.7 82 224-309 15-96 (103)
78 2jik_A Synaptojanin-2 binding 98.9 4.6E-09 1.6E-13 88.5 7.6 78 224-302 18-98 (101)
79 2zpm_A Regulator of sigma E pr 98.8 2.3E-09 7.9E-14 88.6 5.5 66 243-310 6-71 (91)
80 2pzd_A Serine protease HTRA2; 98.8 5E-09 1.7E-13 90.2 7.7 69 240-312 34-102 (113)
81 1m5z_A GRIP, AMPA receptor int 98.8 7E-09 2.4E-13 85.6 8.2 72 224-300 19-90 (91)
82 2g5m_B Neurabin-2; spinophilin 98.8 8.4E-10 2.9E-14 95.1 2.7 82 224-306 15-100 (113)
83 2fne_A Multiple PDZ domain pro 98.8 3E-09 1E-13 92.6 6.2 79 224-303 36-115 (117)
84 2qg1_A Multiple PDZ domain pro 98.8 5.7E-09 2E-13 86.3 7.6 73 224-301 16-89 (92)
85 2fcf_A Multiple PDZ domain pro 98.8 5.2E-09 1.8E-13 88.5 7.5 61 241-302 39-100 (103)
86 2o2t_A Multiple PDZ domain pro 98.8 6.1E-10 2.1E-14 96.6 1.7 80 224-304 32-113 (117)
87 2i1n_A Discs, large homolog 3; 98.8 2.5E-09 8.6E-14 90.3 5.4 79 224-303 15-96 (102)
88 2eeg_A PDZ and LIM domain prot 98.8 3.3E-09 1.1E-13 88.3 5.9 74 225-302 19-92 (94)
89 2fe5_A Presynaptic protein SAP 98.8 9.2E-09 3.1E-13 85.4 8.6 77 224-301 14-93 (94)
90 2kv8_A RGS12, regulator of G-p 98.8 3.1E-09 1.1E-13 86.3 5.6 69 224-300 13-81 (83)
91 1ujv_A Membrane associated gua 98.8 6.4E-09 2.2E-13 87.2 7.7 74 221-302 18-92 (96)
92 3khf_A Microtubule-associated 98.8 4.9E-09 1.7E-13 88.0 7.0 60 242-302 35-94 (99)
93 1whd_A RGS3, regulator of G-pr 98.8 6.5E-10 2.2E-14 93.9 1.5 74 221-302 23-96 (100)
94 3tsv_A Tight junction protein 98.8 4.6E-09 1.6E-13 92.4 6.9 74 224-302 39-113 (124)
95 2yt7_A Amyloid beta A4 precurs 98.8 8.7E-09 3E-13 87.1 8.2 76 224-300 21-98 (101)
96 1va8_A Maguk P55 subfamily mem 98.8 4.1E-09 1.4E-13 91.0 6.3 72 225-303 38-110 (113)
97 1wi4_A Synip, syntaxin binding 98.8 4.1E-09 1.4E-13 90.5 6.3 78 224-302 25-106 (109)
98 2ejy_A 55 kDa erythrocyte memb 98.8 4.3E-09 1.5E-13 88.6 5.9 71 224-300 24-95 (97)
99 1wi2_A Riken cDNA 2700099C19; 98.8 8.2E-09 2.8E-13 87.6 7.6 74 224-302 27-100 (104)
100 1v5q_A GRIP1 homolog, glutamat 98.8 6.4E-09 2.2E-13 91.0 7.1 82 221-302 24-108 (122)
101 1ueq_A Membrane associated gua 98.8 1.2E-08 4E-13 89.4 8.6 77 223-302 29-107 (123)
102 1ujd_A KIAA0559 protein; PDZ d 98.8 5.7E-09 2E-13 90.7 6.5 79 224-303 30-111 (117)
103 2yub_A LIMK-2, LIM domain kina 98.8 3E-09 1E-13 92.8 4.8 78 225-305 30-109 (118)
104 1uew_A Membrane associated gua 98.8 1.1E-08 3.7E-13 88.4 8.2 79 224-303 22-105 (114)
105 3o46_A Maguk P55 subfamily mem 98.8 8.8E-09 3E-13 85.5 7.2 72 225-301 16-88 (93)
106 3cbz_A Dishevelled-2; PDZ doma 98.8 8.9E-09 3E-13 88.2 7.4 78 224-302 17-97 (108)
107 2h2b_A Tight junction protein 98.8 1.9E-08 6.3E-13 85.7 9.3 78 223-302 18-98 (107)
108 3qik_A Phosphatidylinositol 3, 98.8 5.4E-09 1.8E-13 88.2 5.7 69 224-298 28-98 (101)
109 1uf1_A KIAA1526 protein; PDZ d 98.8 4.7E-09 1.6E-13 92.6 5.7 82 224-310 32-113 (128)
110 2p3w_A Probable serine proteas 98.8 8.7E-09 3E-13 88.6 7.2 69 240-312 34-102 (112)
111 1v5l_A PDZ and LIM domain 3; a 98.8 4.1E-09 1.4E-13 89.3 5.0 61 242-303 30-90 (103)
112 3id1_A Regulator of sigma E pr 98.8 8.5E-09 2.9E-13 86.3 6.7 69 243-313 4-75 (95)
113 1q7x_A PDZ2B domain of PTP-BAS 98.8 6.3E-09 2.1E-13 88.9 6.0 79 224-303 20-104 (108)
114 1wha_A KIAA0147 protein, scrib 98.8 9.4E-09 3.2E-13 87.4 7.0 77 224-301 18-98 (105)
115 1q3o_A Shank1; PDZ, GKAP, pept 98.8 1.3E-08 4.3E-13 87.2 7.7 76 224-300 19-103 (109)
116 3r0h_A INAD, inactivation-NO-a 98.8 1.9E-08 6.3E-13 95.6 9.7 102 199-303 6-110 (206)
117 2d92_A INAD-like protein; PDZ 98.8 6.4E-09 2.2E-13 89.0 5.8 77 224-300 26-104 (108)
118 3i4w_A Disks large homolog 4; 98.8 9.3E-09 3.2E-13 87.0 6.7 73 224-301 22-95 (104)
119 3suz_A Amyloid beta A4 precurs 98.8 1.8E-09 6.2E-14 113.1 2.7 147 145-308 152-301 (388)
120 1uit_A Human discs large 5 pro 98.8 9.4E-09 3.2E-13 89.1 6.7 75 224-304 30-104 (117)
121 2kpk_A Membrane-associated gua 98.8 7.4E-09 2.5E-13 91.6 6.1 76 224-302 29-106 (129)
122 1wfg_A Regulating synaptic mem 98.8 9.9E-09 3.4E-13 91.1 6.8 79 224-302 48-128 (131)
123 2dlu_A INAD-like protein; PDZ 98.8 8.2E-09 2.8E-13 88.6 6.0 74 224-303 26-100 (111)
124 1vb7_A PDZ and LIM domain 2; P 98.8 7.1E-09 2.4E-13 86.3 5.4 75 225-303 17-91 (94)
125 1x6d_A Interleukin-16; PDZ dom 98.8 4.4E-09 1.5E-13 91.5 4.3 81 222-304 25-106 (119)
126 2e7k_A Maguk P55 subfamily mem 98.7 1.6E-08 5.4E-13 83.9 7.4 69 224-300 18-87 (91)
127 2q9v_A Membrane-associated gua 98.7 1E-08 3.4E-13 84.5 6.1 74 224-300 13-88 (90)
128 2ego_A General receptor for ph 98.7 1.7E-08 5.8E-13 84.3 7.6 76 224-300 16-95 (96)
129 2la8_A Inactivation-NO-after-p 98.7 1.5E-08 5.2E-13 86.5 7.1 70 224-300 14-84 (106)
130 1y8t_A Hypothetical protein RV 98.7 4.2E-08 1.4E-12 100.1 11.7 84 223-312 228-313 (324)
131 1wf8_A Neurabin-I; PDZ domain, 98.7 8.5E-09 2.9E-13 87.9 5.5 78 224-302 20-101 (107)
132 2i6v_A General secretion pathw 98.7 3.7E-08 1.3E-12 80.9 9.0 66 242-309 20-86 (87)
133 1y7n_A Amyloid beta A4 precurs 98.7 1.2E-08 4.1E-13 84.6 6.0 67 223-300 23-89 (90)
134 2dkr_A LIN-7 homolog B; LIN-7B 98.7 1.4E-08 4.8E-13 84.1 6.4 74 224-301 16-90 (93)
135 1v62_A KIAA1719 protein; struc 98.7 1.2E-08 4.1E-13 88.7 6.2 76 224-302 27-103 (117)
136 1nf3_C PAR-6B; semi-CRIB motif 98.7 1.3E-08 4.5E-13 89.9 6.4 60 242-302 66-126 (128)
137 1qav_A Alpha-1 syntrophin (res 98.7 2.3E-08 7.8E-13 82.4 7.4 72 224-299 16-88 (90)
138 3egg_C Spinophilin; PP1, serin 98.7 1.6E-08 5.4E-13 93.9 7.1 76 224-300 91-170 (170)
139 1mfg_A ERB-B2 interacting prot 98.7 3.7E-08 1.3E-12 82.0 8.7 75 225-301 14-93 (95)
140 2edp_A Fragment, shroom family 98.7 5.4E-09 1.8E-13 88.2 3.6 74 224-302 21-95 (100)
141 2eno_A Synaptojanin-2-binding 98.7 1.6E-08 5.6E-13 88.0 6.3 78 224-302 28-108 (120)
142 2rcz_A Tight junction protein 98.7 3.7E-08 1.3E-12 79.0 7.8 59 242-301 22-81 (81)
143 3qe1_A Sorting nexin-27, G pro 98.7 2.4E-08 8.3E-13 85.0 6.9 58 244-302 46-103 (107)
144 1uhp_A Hypothetical protein KI 98.7 3.5E-08 1.2E-12 84.1 7.6 78 223-301 18-101 (107)
145 2ehr_A INAD-like protein; PDZ 98.7 6E-08 2.1E-12 84.0 9.2 78 223-301 26-110 (117)
146 2daz_A INAD-like protein; PDZ 98.7 1.6E-08 5.4E-13 88.7 5.5 77 224-303 36-113 (124)
147 1n7t_A 99-MER peptide of densi 98.7 2.9E-08 9.9E-13 83.9 6.9 74 225-300 22-100 (103)
148 1te0_A Protease DEGS; two doma 98.7 4.5E-08 1.5E-12 99.7 9.6 70 240-311 243-313 (318)
149 2csj_A TJP2 protein; PDZ domai 98.7 9E-09 3.1E-13 89.3 3.6 78 223-302 25-105 (117)
150 1x5n_A Harmonin; PDZ domain, u 98.7 1.3E-08 4.5E-13 87.7 4.5 76 223-303 26-102 (114)
151 2i4s_A General secretion pathw 98.7 6.6E-08 2.3E-12 82.3 8.8 66 242-309 38-104 (105)
152 3k1r_A Harmonin; protein-prote 98.7 3.6E-08 1.2E-12 93.1 7.7 74 224-302 96-169 (192)
153 3kzd_A TIAM-1, T-lymphoma inva 98.7 5.4E-08 1.8E-12 81.3 7.8 70 224-298 20-89 (94)
154 3soe_A Membrane-associated gua 98.7 7.3E-08 2.5E-12 83.2 8.9 72 224-303 23-95 (113)
155 2qbw_A PDZ-fibronectin fusion 98.6 1.1E-07 3.9E-12 89.3 10.8 69 240-310 23-94 (195)
156 4e34_A Golgi-associated PDZ an 98.6 5E-08 1.7E-12 79.7 7.1 71 224-298 14-85 (87)
157 1tp5_A Presynaptic density pro 98.6 5.1E-08 1.7E-12 84.6 7.5 73 224-301 25-98 (119)
158 2cs5_A Tyrosine-protein phosph 98.6 3.5E-08 1.2E-12 85.7 6.4 77 223-302 26-107 (119)
159 3e17_A Tight junction protein 98.6 3.9E-08 1.3E-12 81.0 6.3 58 242-300 22-80 (88)
160 2eei_A PDZ domain-containing p 98.6 1.3E-08 4.5E-13 86.5 3.5 74 224-302 19-92 (106)
161 3nfk_A Tyrosine-protein phosph 98.6 6.7E-08 2.3E-12 82.2 7.9 74 224-300 29-107 (107)
162 2edv_A FERM and PDZ domain-con 98.6 1.3E-08 4.5E-13 85.1 3.4 68 225-301 22-89 (96)
163 2z17_A Pleckstrin homology SEC 98.6 2.1E-08 7.1E-13 85.1 4.5 91 201-297 9-103 (104)
164 3stj_A Protease DEGQ; serine p 98.6 4.8E-08 1.6E-12 100.7 7.9 70 241-312 263-333 (345)
165 1p1d_A PDZ45, glutamate recept 98.6 8.3E-08 2.8E-12 90.7 8.8 82 222-303 16-100 (196)
166 3hpk_A Protein interacting wit 98.6 7.7E-08 2.6E-12 84.4 7.7 73 223-299 30-103 (125)
167 2dc2_A GOPC, golgi associated 98.6 7.3E-08 2.5E-12 81.7 6.7 75 224-302 21-96 (103)
168 1uju_A Scribble; PDZ domain, c 98.6 3.6E-08 1.2E-12 84.6 4.8 79 223-302 20-105 (111)
169 2krg_A Na(+)/H(+) exchange reg 98.6 3.3E-09 1.1E-13 102.3 -2.1 90 223-317 19-111 (216)
170 2hga_A Conserved protein MTH13 98.6 1.5E-07 5E-12 82.9 8.5 64 240-308 24-88 (125)
171 2gzv_A PRKCA-binding protein; 98.6 9.7E-08 3.3E-12 82.6 7.2 72 224-299 36-108 (114)
172 1vae_A Rhophilin 2, rhophilin, 98.6 2.7E-08 9.1E-13 85.8 3.3 69 224-299 26-94 (111)
173 1ufx_A KIAA1526 protein; PDZ d 98.5 4.4E-08 1.5E-12 83.2 4.5 76 224-301 17-97 (103)
174 3gsl_A Disks large homolog 4; 98.5 2.4E-07 8.3E-12 86.7 10.0 77 224-301 16-95 (196)
175 2qt5_A Glutamate receptor-inte 98.5 2.4E-07 8.1E-12 87.7 9.7 75 223-301 18-93 (200)
176 3qo6_A Protease DO-like 1, chl 98.5 1.3E-07 4.4E-12 97.5 7.7 71 241-313 251-333 (348)
177 1lcy_A HTRA2 serine protease; 98.5 2E-07 7E-12 95.2 8.6 67 241-311 256-322 (325)
178 2lob_A Golgi-associated PDZ an 97.9 1.4E-08 4.9E-13 87.6 0.0 71 224-298 39-110 (112)
179 3tsz_A Tight junction protein 98.5 1.1E-07 3.8E-12 99.6 6.7 73 225-302 20-93 (391)
180 1um7_A Synapse-associated prot 98.5 4.6E-08 1.6E-12 83.9 2.7 74 224-302 26-100 (113)
181 2d8i_A T-cell lymphoma invasio 98.5 1.5E-07 5.3E-12 81.4 5.5 58 241-301 44-101 (114)
182 3gge_A PDZ domain-containing p 98.4 4E-07 1.4E-11 75.9 7.6 71 224-299 16-88 (95)
183 3pv2_A DEGQ; trypsin fold, PDZ 98.4 4.8E-07 1.6E-11 96.5 10.0 70 241-312 282-352 (451)
184 3r0h_A INAD, inactivation-NO-a 98.4 4.8E-07 1.7E-11 85.7 7.7 70 224-300 125-195 (206)
185 3rle_A Golgi reassembly-stacki 98.4 3.1E-07 1.1E-11 87.8 6.3 69 240-309 15-86 (209)
186 3gsl_A Disks large homolog 4; 98.4 5.8E-07 2E-11 84.0 7.9 79 225-304 112-193 (196)
187 1z87_A Alpha-1-syntrophin; pro 98.4 2.4E-07 8.1E-12 91.8 5.4 76 223-302 88-164 (263)
188 2qt5_A Glutamate receptor-inte 98.4 6E-07 2E-11 84.9 7.5 63 241-304 135-198 (200)
189 4a8c_A Periplasmic PH-dependen 98.4 8.3E-07 2.8E-11 94.3 9.3 70 241-312 263-333 (436)
190 3rle_A Golgi reassembly-stacki 98.3 4.2E-07 1.5E-11 86.9 6.1 68 241-311 112-182 (209)
191 3shw_A Tight junction protein 98.3 4.5E-07 1.6E-11 96.7 6.5 74 224-302 11-85 (468)
192 2xkx_A Disks large homolog 4; 98.3 1.1E-06 3.6E-11 99.2 9.3 86 224-310 70-162 (721)
193 3num_A Serine protease HTRA1; 98.3 9.5E-08 3.2E-12 97.9 0.0 68 241-312 254-321 (332)
194 4a8c_A Periplasmic PH-dependen 98.2 2.4E-06 8.3E-11 90.7 8.9 68 241-311 363-430 (436)
195 3pv2_A DEGQ; trypsin fold, PDZ 98.2 2.2E-06 7.7E-11 91.3 7.8 66 241-309 386-451 (451)
196 1p1d_A PDZ45, glutamate recept 98.2 1.6E-06 5.5E-11 81.7 6.0 75 225-301 120-195 (196)
197 1ky9_A Protease DO, DEGP, HTRA 98.1 8.5E-07 2.9E-11 94.5 3.7 68 241-310 286-354 (448)
198 4fln_A Protease DO-like 2, chl 98.0 1E-05 3.5E-10 87.7 9.7 70 240-312 276-356 (539)
199 1ky9_A Protease DO, DEGP, HTRA 97.8 3.6E-06 1.2E-10 89.7 0.0 65 241-308 383-447 (448)
200 2xkx_A Disks large homolog 4; 97.7 4.8E-05 1.6E-09 85.7 8.7 74 224-302 318-392 (721)
201 1w9e_A Syntenin 1; cell adhesi 97.7 9.2E-06 3.1E-10 74.4 1.1 37 244-280 110-146 (166)
202 3suz_A Amyloid beta A4 precurs 97.3 3.4E-05 1.2E-09 80.6 0.0 56 244-300 318-373 (388)
203 4fln_A Protease DO-like 2, chl 96.0 0.0091 3.1E-07 64.7 7.2 66 241-311 415-480 (539)
204 3viv_A 441AA long hypothetical 88.7 1.2 4.2E-05 42.6 8.3 83 332-441 7-93 (230)
205 1y7o_A ATP-dependent CLP prote 80.1 2.7 9.2E-05 39.7 6.3 82 333-442 45-127 (218)
206 1yg6_A ATP-dependent CLP prote 76.6 2.2 7.6E-05 39.4 4.4 82 333-442 26-108 (193)
207 2cby_A ATP-dependent CLP prote 75.7 2.6 8.8E-05 39.5 4.7 71 345-442 38-109 (208)
208 2f6i_A ATP-dependent CLP prote 71.0 3.4 0.00011 39.0 4.2 71 345-442 50-120 (215)
209 3qwd_A ATP-dependent CLP prote 66.8 5.1 0.00018 37.4 4.4 71 344-441 37-108 (203)
210 3p2l_A ATP-dependent CLP prote 62.9 6.7 0.00023 36.6 4.4 80 334-441 31-111 (201)
211 1tg6_A Putative ATP-dependent 54.6 14 0.00047 36.3 5.2 70 346-442 94-164 (277)
212 3rst_A Signal peptide peptidas 54.4 14 0.0005 35.0 5.3 69 348-440 31-101 (240)
213 2j3t_D Trafficking protein par 36.7 55 0.0019 30.8 6.0 52 240-297 44-98 (219)
214 3bf0_A Protease 4; bacterial, 35.4 17 0.00058 39.5 2.6 84 333-440 301-393 (593)
215 2kln_A Probable sulphate-trans 33.4 64 0.0022 26.9 5.6 66 333-398 14-86 (130)
216 1j7x_A IRBP, interphotorecepto 30.5 1E+02 0.0035 30.0 7.3 59 145-207 5-66 (302)
217 3bl4_A Uncharacterized protein 30.3 75 0.0026 27.0 5.4 49 332-381 18-69 (124)
218 3swx_A Probable enoyl-COA hydr 24.7 2.8E+02 0.0095 26.2 9.1 98 333-441 17-125 (265)
219 1th8_B Anti-sigma F factor ant 24.4 68 0.0023 25.6 4.0 44 334-377 12-57 (116)
220 4f47_A Enoyl-COA hydratase ECH 24.1 99 0.0034 29.7 5.7 103 333-440 28-137 (278)
221 2ka5_A Putative anti-sigma fac 23.7 2E+02 0.0067 23.6 6.9 47 333-379 20-68 (125)
222 3ny7_A YCHM protein, sulfate t 23.3 70 0.0024 26.3 3.9 46 332-378 15-61 (118)
223 1sbo_A Putative anti-sigma fac 23.2 87 0.003 24.6 4.4 47 333-379 12-60 (110)
224 3lao_A Enoyl-COA hydratase/iso 21.9 3.2E+02 0.011 25.6 8.8 97 333-440 20-127 (258)
225 3t6o_A Sulfate transporter/ant 20.7 99 0.0034 25.3 4.3 45 333-377 13-62 (121)
No 1
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=100.00 E-value=1.4e-60 Score=502.87 Aligned_cols=371 Identities=53% Similarity=0.934 Sum_probs=323.5
Q ss_pred chhHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhccccCC
Q 009668 142 SEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQG 221 (529)
Q Consensus 142 s~~~~~fd~v~~~l~~~Y~~~~~~g~~w~~~~~~~~~~~~~~~~~~f~~~i~~~l~~L~Dpht~~l~~~~~~~~~~~~~~ 221 (529)
++.++.|+++|+.++++|+++.+++.+|+++++.+.+...+++.++++.++.+|+++|+|||+.|++++++..+.....+
T Consensus 3 ~~~~~~f~~~w~~i~~~y~~~~~~~~dW~~~~~~y~~~~~~~~~~~~~~~i~~ml~~L~D~hs~~~~~~~~~~~~~~~~g 82 (388)
T 1fc6_A 3 TSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRGTAG 82 (388)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTTGGGCCHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCCTTCEEECHHHHHHHHHCSSS
T ss_pred ccHHHHHHHHHHHHHHHHhcccccCccHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCcceecCHHHHHHHHHhhcC
Confidence 56788999999999999999999999999999998763456778999999999999999999999999998887777778
Q ss_pred cceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 222 ~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.+.|+|+.+.... ..+++++|..|.++|||+++||++||+|++|||+++.++..+++..++++.+|++++|+|.|++
T Consensus 83 ~~~giG~~~~~~~---~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 159 (388)
T 1fc6_A 83 SVTGVGLEITYDG---GSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG 159 (388)
T ss_dssp SCBBCSEEEEECT---TCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred ceEEEEEEEEEee---cCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 8999999987531 0135799999999999999999999999999999999988788888999999999999999998
Q ss_pred e---eEEEEEeeeccccccccceeee------cCCCCCCCCceEEEEecccccchhHHHHHHHHHHhhCCCCeEEEEcCC
Q 009668 302 E---IRHLALTREKVSLNPVKSRLCV------VPGPGKSSPRIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRD 372 (529)
Q Consensus 302 ~---~~~v~l~r~~~~~~~v~~~~~~------~~~~~~~~~~igYl~i~sF~~~~~~~l~~~l~~l~~~~~~~LIIDLR~ 372 (529)
+ .++++|++..+..+++....++ .. ....+++||||+|++|...+.+++.+++.+++++++++||||||+
T Consensus 160 ~~~~~~~~~l~r~~i~~~~v~~~~~~~~~~~~~~-~~~~~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~~~~lIlDLR~ 238 (388)
T 1fc6_A 160 APSNTRTLQLTRQKVTINPVTFTTCSNVAAAALP-PGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRN 238 (388)
T ss_dssp EEEEEEEEEEECBCCCCCCEEEEEECSCCGGGSC-TTCSSSCEEEEEECCBSTTHHHHHHHHHHHHHHTTCSEEEEECTT
T ss_pred CCcceEEEEEEEceeecCceeeeeeccccccccc-cccCCCCEEEEEeCccCcchHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 7 8899999999888888765532 00 023357999999999998888999999999988899999999999
Q ss_pred CCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCeEEEccC
Q 009668 373 NSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEP 452 (529)
Q Consensus 373 N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~VL~d~~TaSAaE~fa~~lk~~~~a~iVGe~ 452 (529)
|+||++..+..++++|++++.+++++.+.+..+.|...+. ...+.+|++||||++||||||+||++||+++++++||++
T Consensus 239 N~GG~~~~~~~~~~~f~~~~~i~~~~~r~~~~~~~~~~~~-~~~~~~pv~VLvn~~taSasEi~a~al~~~~~~~~vG~~ 317 (388)
T 1fc6_A 239 NGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADGN-SIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAGER 317 (388)
T ss_dssp CCCBCHHHHHHHHHHHCSSSEEEEEEETTEEEEEEECCSC-CSCSSSCEEEEECTTCCTHHHHHHHHHHHTTSEEEEESC
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEecCCCceeEEecCCc-cccCCCCEEEEeCCCCccHHHHHHHHHhhCCCEEEEeec
Confidence 9999999999999999999998888877776666655432 234889999999999999999999999999999999999
Q ss_pred CCCCceeeeEEECCCCceEEEEeeEEEcCCCcccCCCCcccceEcCCCC-CCChhhHh---hhccCccc
Q 009668 453 TYGKGKIQSVFQLSDGSGLAVTVARYETPAHTDIDKVGVIPDHPLPKTF-PKDEDGFC---GCLQDSAS 517 (529)
Q Consensus 453 T~G~~~~~~~~~L~~G~~l~lt~~~~~~p~G~~~e~~GV~PDi~V~~~~-~~~~~~l~---~~l~d~~~ 517 (529)
|+|++.+|..++||+|+.+.+|++++++|+|+.+|+.||.|||+|+.+. +.....++ ...+||++
T Consensus 318 T~Gkg~~~~~~~L~~g~~l~~t~~~~~~p~G~~~~~~Gi~PDi~v~~~~~~~~~~~~~~~~~~~~Dpql 386 (388)
T 1fc6_A 318 TFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPTDLEGVCRVLGSDAAPRL 386 (388)
T ss_dssp CCCCCEEEEEEECTTSCEEEEEEEEEECTTSCBCTTTCCCCSEECCTTSSCSSHHHHHHHHHSTTCCCC
T ss_pred CCCCCeeeeEEEcCCCCEEEEEEEEEEcCCCCCccCCCcCCCEEeCCcccchhhhhhhhhcCCccchhh
Confidence 9999999999999999999999999999999999999999999998774 44445552 34566654
No 2
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.7e-47 Score=448.04 Aligned_cols=347 Identities=18% Similarity=0.215 Sum_probs=282.7
Q ss_pred ccchhHHHHHHHHHHHHHHcCCCCCCCCCh-HHHHHHHhcc-CCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhcc
Q 009668 140 ALSEENRLFLEAWRTIDRAYVDKTFNGQSW-FRYRENALRN-EPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRS 217 (529)
Q Consensus 140 ~~s~~~~~fd~v~~~l~~~Y~~~~~~g~~w-~~~~~~~~~~-~~~~~~~~f~~~i~~~l~~L~Dpht~~l~~~~~~~~~~ 217 (529)
+..+.++.|+++|+.|+++|+++. ++.+| +++++.+.+. ....+.++++.++.+|+++|+|||+.+. +.++..
T Consensus 656 ~~~~~~~~~~~~~~~~~~~y~~~~-~~~d~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~d~ht~~~-~~~~~~--- 730 (1045)
T 1k32_A 656 IHEEFLQMYDEAWKLARDNYWNEA-VAKEISERIYEKYRNLVPLCKTRYDLSNVIVEMQGEYRTSHSYEM-GGTFTD--- 730 (1045)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCHH-HHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHTTCCSCCCEE-CCCCCS---
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCC-CCCChHHHHHHHHHHhhcccCCHHHHHHHHHHHHHhcCCCcceEC-hhHhcc---
Confidence 346788999999999999999988 89999 9999888754 3466789999999999999999999654 444432
Q ss_pred ccCCcceeeeEEEeecCCCCCCCCcEEEEEecCC--------CcccCCC--CCCCCEEEEECCEecCCCCHHHHHHHhcC
Q 009668 218 GTQGALTGVGLSIGYPTASDGSSAGLVVISSMPG--------GPANRAG--ILSGDVILAIDDTSTESMGIYDAAERLQG 287 (529)
Q Consensus 218 ~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~g--------sPA~~aG--L~~GD~IlaInG~~v~~~~~~~~~~~l~g 287 (529)
...+.+.|+|+.+... +++++|..|++| |||+++| |+ ||+|++|||+++..+. ++..++++
T Consensus 731 ~~~~~~~g~G~~~~~~------~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~ 801 (1045)
T 1k32_A 731 KDPFRSGRIACDFKLD------GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSE 801 (1045)
T ss_dssp CCCCCCCBCSEEEEEE------TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHT
T ss_pred ccccccceecEEEEEe------CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcC
Confidence 2356678999998875 578999999998 9999999 99 9999999999999873 67788999
Q ss_pred CCCCcEEEEEeeCC-eeEEEEEeeeccccccccce---------eeecCCCCCCCCceEEEEecccccchhHHHHHHHHH
Q 009668 288 PEGSPVELTVRSGA-EIRHLALTREKVSLNPVKSR---------LCVVPGPGKSSPRIGYIKLTSFNQNASGAVREAIDT 357 (529)
Q Consensus 288 ~~G~~v~ltv~r~g-~~~~v~l~r~~~~~~~v~~~---------~~~~~~~~~~~~~igYl~i~sF~~~~~~~l~~~l~~ 357 (529)
++|++++|+|.|++ +.++++|++.. ...++..+ ..+ ..+++||||+|++|.....+++.+++.+
T Consensus 802 ~~g~~v~l~v~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~igyi~~~~f~~~~~~~~~~~~~~ 875 (1045)
T 1k32_A 802 KAGTSARIRLSGKGGDKRDLMIDILD-DDRFIRYRSWVEANRRYVHE-----RSKGTIGYIHIPDMGMMGLNEFYRLFIN 875 (1045)
T ss_dssp TTTSEEEEEEECSSSCEEEEEEECBS-CCHHHHHHHHHHHHHHHHHH-----HTTTSEEEEECCCBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCceEEEEEEEcc-cccchhhhhhhhhcceeEEE-----ecCCCEEEEEECccCchHHHHHHHHHHH
Confidence 99999999999976 56788887532 11222110 111 2346899999999998878888888876
Q ss_pred HhhCCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCCCCcccCCCCEEEEECCCCCCHHHHHH
Q 009668 358 LRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILA 437 (529)
Q Consensus 358 l~~~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~VL~d~~TaSAaE~fa 437 (529)
+ +++++||||||+|+||++..+ ++++| +++.+++++.+.+....+... .+.+|++||||++||||||+|+
T Consensus 876 ~--~~~~~liiDlR~N~GG~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vL~~~~taSa~e~~~ 945 (1045)
T 1k32_A 876 E--SSYQGLIVDVRFNGGGFVSQL--IIEKL-MNKRIGYDNPRRGTLSPYPTN-----SVRGKIIAITNEYAGSDGDIFS 945 (1045)
T ss_dssp H--TTSSEEEEECTTCCCBSCHHH--HHHHH-TCBCCEEEEESSSCCEEESTT-----CBCSEEEEEECTTCCTHHHHHH
T ss_pred h--CCCCEEEEEcCcCCCCCHHHH--HHhhc-cCCcEEEEecCCCceeecccc-----CCCCCEEEEECCCCccHHHHHH
Confidence 5 489999999999999999875 46765 566777887777766555432 3789999999999999999999
Q ss_pred HHHhcCCCeEEEccCCCCCceee--eEEECCCCceEEEE-eeEEEcCCCcccCCCCcccceEcCCCCCCChhhHhhhccC
Q 009668 438 GALKDNKRAVLFGEPTYGKGKIQ--SVFQLSDGSGLAVT-VARYETPAHTDIDKVGVIPDHPLPKTFPKDEDGFCGCLQD 514 (529)
Q Consensus 438 ~~lk~~~~a~iVGe~T~G~~~~~--~~~~L~~G~~l~lt-~~~~~~p~G~~~e~~GV~PDi~V~~~~~~~~~~l~~~l~d 514 (529)
++||++++++|||++|+| +.++ ..++|++|+.+.+| +++|++|+|..+|+.||+|||+|+.+. +++ ...+|
T Consensus 946 ~~l~~~~~~~~vG~~t~G-g~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~Gi~Pdi~v~~~~----~~~-~~~~d 1019 (1045)
T 1k32_A 946 FSFKKLGLGKLIGTRTWG-GVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGVENYGVDPDVEIEYAP----HDY-LSGKD 1019 (1045)
T ss_dssp HHHHHTTSEEEEESCCCC-CCEECCCCCBCTTSCEECCCCEEEEETTTBTTTTTTCCCCSEECCCCH----HHH-HTTCC
T ss_pred HHHhhcCCEEEEccCCCC-CccccCceEEcCCCCeEEEeeEEEEECCCCCccCCCCccCCEEeCCCh----HHh-ccCcc
Confidence 999999999999999999 5554 56899999999998 789999999999999999999998764 233 34677
Q ss_pred cccccccc
Q 009668 515 SASTCNMN 522 (529)
Q Consensus 515 ~~~~~~~~ 522 (529)
++++.|+.
T Consensus 1020 ~~l~~a~~ 1027 (1045)
T 1k32_A 1020 PQIDYAID 1027 (1045)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777764
No 3
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=3.1e-45 Score=385.90 Aligned_cols=288 Identities=19% Similarity=0.246 Sum_probs=221.1
Q ss_pred ceeeeEEEeecCCCCCCCC-cEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 223 LTGVGLSIGYPTASDGSSA-GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~-~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
..|+|+.+..... ...+ .++|.+|.+||||++|||++||+|++|||+++..+. +..++++ +|++++|++.|++
T Consensus 73 ~~G~~~~l~~~~~--~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g 146 (403)
T 3k50_A 73 SYGFDYTLYKVLD--NDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEV 146 (403)
T ss_dssp BCSEEEEEEECTT--CSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEE
T ss_pred ccceEEEEEEcCC--CCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCC
Confidence 5677777654311 0011 367999999999999999999999999999999874 4567777 8999999999876
Q ss_pred eeE------------EEEEe-eeccccccc-cceeeecCCCCCCCCceEEEEecccccc-------hhHHHHHHHHHHhh
Q 009668 302 EIR------------HLALT-REKVSLNPV-KSRLCVVPGPGKSSPRIGYIKLTSFNQN-------ASGAVREAIDTLRS 360 (529)
Q Consensus 302 ~~~------------~v~l~-r~~~~~~~v-~~~~~~~~~~~~~~~~igYl~i~sF~~~-------~~~~l~~~l~~l~~ 360 (529)
+.. +++++ +..+...|+ ..+++. ..+++||||+|++|..+ +.++++++|.+|++
T Consensus 147 ~~~~~~~~~~~i~~~~~~l~~~r~~~~~pv~~~~v~~-----~~~~~iGYI~i~~F~~~t~~~~~~~~~~l~~al~~l~~ 221 (403)
T 3k50_A 147 VGEDGEVTGGVVPIGETTMPASRSLVDKPVHRFEIIP-----WNGKKVGYLMYNEFKAGPTTDSQAYNDDLRRAFRDFQT 221 (403)
T ss_dssp C-----CEEEEEEEEEEEECCCBCCCCCSEEEEEEEE-----ETTEEEEEEEECCBCCCSSTTCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceEEEeeeeeeeccceeeeeee-----eCCCcEEEEEEccccCcccccchhhHHHHHHHHHHHHH
Confidence 532 34443 222333444 334443 23468999999999874 35799999999999
Q ss_pred CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCc----EEEEE--cCCCce-eeeecCCC----CcccCCCCEEEEECCCC
Q 009668 361 NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGV----IVYIC--DSRGVR-DIYDTDGT----DALAASEPLAVLVNKGT 429 (529)
Q Consensus 361 ~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~----~~~~~--~~~~~~-~~~~~~~~----~~~~~~gpv~VL~d~~T 429 (529)
+++++||||||+|+||.+..+..++++|++++. +++.+ .+.+.. ..+..... ......+|++||||++|
T Consensus 222 ~~~~~lIlDLR~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vL~~~~t 301 (403)
T 3k50_A 222 GGVNEFVLDLRYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNAT 301 (403)
T ss_dssp TTCCEEEEECTTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEECCGGGTTTSCCCCCSEEEEEECTTC
T ss_pred CCCcEEEEEcCCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEeccccccccccccCCCCEEEEECCCC
Confidence 999999999999999999999999999999886 55655 333332 22332211 11234579999999999
Q ss_pred CCHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEE-CCCCceEEEEeeEEEcCCCcccCCCCcccceEcCCCCCC-Chhh
Q 009668 430 ASASEILAGALKDNKRAVLFGEPTYGKGKIQSVFQ-LSDGSGLAVTVARYETPAHTDIDKVGVIPDHPLPKTFPK-DEDG 507 (529)
Q Consensus 430 aSAaE~fa~~lk~~~~a~iVGe~T~G~~~~~~~~~-L~~G~~l~lt~~~~~~p~G~~~e~~GV~PDi~V~~~~~~-~~~~ 507 (529)
|||||+|+++||+++++++||++|+|++.++..+. +++|+.+++++.++++|+|..+++.||+|||+|+.+... ...+
T Consensus 302 aSa~E~~~~~l~~~~~~~~iG~~T~G~~~~~~~~~~~~~g~~l~~t~~~~~~~~G~~~~~~Gi~PDi~v~~~~~~~~~~~ 381 (403)
T 3k50_A 302 RGAAEMVINCLNPYMKVVLIGTKTAGEYVATKPFVHPTDRFILNLVVCNVYNAEEKSDYATGFKPTYEYNEDSYLSTYLP 381 (403)
T ss_dssp CTHHHHHHHHHTTTSEEEEEESCCCCCCEEEEEEECSSSCEEEEEEEEEEECTTSCCCCTTCCCCSEECCGGGCGGGCCC
T ss_pred ccHHHHHHHHHhhCCCEEEEeecCCCCCeeeeEEEeCCCCcEEEEEEEEEECCCCCCccCCCcCceEEeCCCcccccccc
Confidence 99999999999999999999999999999888886 678999999999999999999999999999999875320 0012
Q ss_pred HhhhccCcccccccc
Q 009668 508 FCGCLQDSASTCNMN 522 (529)
Q Consensus 508 l~~~l~d~~~~~~~~ 522 (529)
+ .-.+||.+++||.
T Consensus 382 ~-~~~~D~~L~~Al~ 395 (403)
T 3k50_A 382 F-GNTNETLLNAALK 395 (403)
T ss_dssp T-TCTTSHHHHHHHH
T ss_pred c-CCCccHHHHHHHH
Confidence 2 2357888888875
No 4
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=100.00 E-value=2.2e-32 Score=293.72 Aligned_cols=351 Identities=17% Similarity=0.217 Sum_probs=237.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCC----CCCCChHH----HHHHHhccCCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhh
Q 009668 143 EENRLFLEAWRTIDRAYVDKT----FNGQSWFR----YRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNS 214 (529)
Q Consensus 143 ~~~~~fd~v~~~l~~~Y~~~~----~~g~~w~~----~~~~~~~~~~~~~~~~f~~~i~~~l~~L~Dpht~~l~~~~~~~ 214 (529)
+.-+.|+.+-+++..+|.-.. ..++|-.+ .++.+. .....+..+|+..+..+++.++|.|+.+..+..
T Consensus 6 ~~~~d~~~l~~l~~~kYap~~wK~~~~g~Dl~~~l~~ir~kl~-~e~~~Te~dFq~~L~~~fasl~DGHt~l~~~s~--- 81 (583)
T 3dor_A 6 NALQDLSFLEHLLQVKYAPKTWKEQYLGWDLVQSSVSAQQKLR-TQENPSTSFCQQVLADFIGGLNDFHAGVTFFAI--- 81 (583)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHSCCCHHHHHHHHHHHHH-HSSSCCHHHHHHHHHHHHHTTCCSSCEEEESCC---
T ss_pred HHHHHHHHHHHHHhcccCCchhhhccCCcCchhHHHHHHHHHH-ccCCCCHHHHHHHHHHHHhhcCCCceeEeeccc---
Confidence 345678888888988886432 23443322 223332 224566799999999999999999999864411
Q ss_pred hccccCCcceeeeEEEe-ecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCH--------------H
Q 009668 215 LRSGTQGALTGVGLSIG-YPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGI--------------Y 279 (529)
Q Consensus 215 ~~~~~~~~~~glG~~~~-~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~--------------~ 279 (529)
.+..+|+.+. .. ++.++|+.+... .++++.||+|++|||+++..+-. .
T Consensus 82 -------~~a~~Pf~vki~i------DG~i~V~dv~~~----~s~I~vGdEIlsING~pv~e~Lek~~~~~Gsn~~a~~~ 144 (583)
T 3dor_A 82 -------ESAYLPYTVQKSS------DGRFYFVDIMTF----SSEIRVGDELLEVDGAPVQDVLATLYGSNHKGTAAEES 144 (583)
T ss_dssp -------CEEECSEEEEECT------TSCEEEEEECSS----CCSSCTTCEEEEETTEEHHHHHHTTSCTTCCCCHHHHH
T ss_pred -------ccccCCeEEEEEE------CCcEEEEecccc----ccCCCCCCEEEEECCccHHHHHHHHHHhcCCCcHHHHH
Confidence 1223455555 33 467778766322 22799999999999999866410 1
Q ss_pred HHHHHh------cC--CCCCcEEEEEee-CCeeEEEEEe----eecccc----cc------c----------------c-
Q 009668 280 DAAERL------QG--PEGSPVELTVRS-GAEIRHLALT----REKVSL----NP------V----------------K- 319 (529)
Q Consensus 280 ~~~~~l------~g--~~G~~v~ltv~r-~g~~~~v~l~----r~~~~~----~~------v----------------~- 319 (529)
.+.+.| .+ .+.+.++|++.+ +|..+++++. ++.+.. .| + .
T Consensus 145 ~Al~~Lt~R~~~l~~~~p~~~~tlk~~~~~G~~~~v~~pW~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (583)
T 3dor_A 145 AALRTLFSRMASLGHKVPSGRTTLKIRRPFGTTREVRVKWRYVPEGVGDLATIAPSIRAPQLQKSMRSFFPKKDDAFHRS 224 (583)
T ss_dssp HHHHHHTEEEGGGTCCCCCSEEEEEEECTTSCEEEEEEECEEECCCSCCHHHHGGGCCCCCC------------------
T ss_pred HHHHHHhhhHHhhccCCCCCceEEEEECCCCcEEEEEeeeEEcccccccccccCcchhhccccccchhhccccccccccC
Confidence 111211 11 234578888864 5777777653 111100 00 0 0
Q ss_pred ---------------------------------------------c--------eeeecCCCCCCC--CceEEEEecccc
Q 009668 320 ---------------------------------------------S--------RLCVVPGPGKSS--PRIGYIKLTSFN 344 (529)
Q Consensus 320 ---------------------------------------------~--------~~~~~~~~~~~~--~~igYl~i~sF~ 344 (529)
| .+.... +..+ .+||||||++|.
T Consensus 225 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~g~~~w~~~~~~~a~i~~~~--~~~~~~~~ig~~ri~~~~ 302 (583)
T 3dor_A 225 SSLFYSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSVT--DGDGKSHKVGFLRIPTYS 302 (583)
T ss_dssp ---------------------------CCSTTCSSCSCCCSSCCSEECCSSSEEEEEEEE--CSSSCEEEEEEEECCCBC
T ss_pred ccccccccChHHHHHHHhhhhccccccccCccccccccCCCCCcccccCCceeeEEEecc--ccCCCcceeeEEEccccC
Confidence 0 000000 1123 389999999997
Q ss_pred cch-----------hHHHHHHHHHHhhCCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEE----c----------
Q 009668 345 QNA-----------SGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYIC----D---------- 399 (529)
Q Consensus 345 ~~~-----------~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~----~---------- 399 (529)
... -.++.+.++.+. .++++||||+|+|+||+......++++|.+++...-.. .
T Consensus 303 ~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~liid~~~n~gg~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~a~~~ 381 (583)
T 3dor_A 303 WQDMEDFDPSGPPPWEEFAKIIQVFS-SNTEALIIDQTNNPGGSVLYLYALLSMLTDRPLELPKHRMILTQDEVVDALDW 381 (583)
T ss_dssp GGGSTTCCTTSCCHHHHHHHHHHHHH-HHCSEEEEECCSBCCBCHHHHHHHHHTTCSSCEECCEEEECCCHHHHHHHHHH
T ss_pred CcccccccccCCcHHHHHHHHHHHhh-cCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCCCcceeeEEecHHHHHHHHH
Confidence 432 245666666664 37999999999999999999999999999976421100 0
Q ss_pred -------C-------------CCce-----------------------e-eee----------cCCCCcccCCCCEEEEE
Q 009668 400 -------S-------------RGVR-----------------------D-IYD----------TDGTDALAASEPLAVLV 425 (529)
Q Consensus 400 -------~-------------~~~~-----------------------~-~~~----------~~~~~~~~~~gpv~VL~ 425 (529)
. .|.. + .+. ..+.....+++|++|||
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~l~~~~~G~~t~s~p~pl~g~~~i~p~~~~~~~gPvvVLV 461 (583)
T 3dor_A 382 LTLLENVDTNVESRLALGDNMEGYTVDLQVAEYLKSFGRQVLNCWSKGDIELSTPIPLFGFEKIHPHPRVQYSKPICVLI 461 (583)
T ss_dssp HHHHTTCCSHHHHHHHHCSEETTEECCHHHHHHHHHHHHHHHHHHHTTCCSSCSCBCGGGCCEECCCSSCCCCSCEEEEE
T ss_pred HHHHHhhhhhhhhhhhccccccccCccHHHHHHHHHHHHHHHHHHhCCCceecCCcccccceeeccCCCccCCCCEEEEE
Confidence 0 0000 0 000 01223356899999999
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEECCCCceE---EEEeeEEEcCCCcccCCCCcccceEcCCCCC
Q 009668 426 NKGTASASEILAGALKDNKRAVLFGEPTYGKGKIQSVFQLSDGSGL---AVTVARYETPAHTDIDKVGVIPDHPLPKTFP 502 (529)
Q Consensus 426 d~~TaSAaE~fa~~lk~~~~a~iVGe~T~G~~~~~~~~~L~~G~~l---~lt~~~~~~p~G~~~e~~GV~PDi~V~~~~~ 502 (529)
|++||||||+|+++||++++|++||++|+|+++++..+.||+|+.+ .+|++++++|+|+.+|+.||.|||+|+.+.
T Consensus 462 N~~SASASEifA~aLKd~~ra~lVGe~T~Gkg~vq~~~~Lpdg~~l~~lklT~a~~~tp~G~~ie~~GV~PDI~V~~t~- 540 (583)
T 3dor_A 462 NEQDFSCADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGIKTCSLTGSLAVREHGAFIENIGVEPHIDLPFTA- 540 (583)
T ss_dssp CTTBCTHHHHHHHHHHHTTCEEEEESCCCCCCSCEEEECCCCSSCEEEEEEECEEEECTTSCBCTTTCCCCSEECCCCH-
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEeeCCCCCCceeeEEEcCCCCeEEEEEeeeEEEECCCCCCcCCCCcCCcEEeCCCH-
Confidence 9999999999999999999999999999999999999999998755 599999999999999999999999998764
Q ss_pred CChhhHhhhccCcccccccc
Q 009668 503 KDEDGFCGCLQDSASTCNMN 522 (529)
Q Consensus 503 ~~~~~l~~~l~d~~~~~~~~ 522 (529)
+++. .++|++++.|+.
T Consensus 541 ---~dl~-~GrD~ql~~AV~ 556 (583)
T 3dor_A 541 ---NDIR-YKGYSEYLDKVK 556 (583)
T ss_dssp ---HHHH-TTCCHHHHHHHH
T ss_pred ---HHHH-cCCCHHHHHHHH
Confidence 4443 477877777654
No 5
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=99.97 E-value=2e-31 Score=271.45 Aligned_cols=175 Identities=20% Similarity=0.252 Sum_probs=140.8
Q ss_pred CceEEEEecccccc-hhHHHHHHHHHHh---hCCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCc---EEEEEcCCCce-
Q 009668 333 PRIGYIKLTSFNQN-ASGAVREAIDTLR---SNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGV---IVYICDSRGVR- 404 (529)
Q Consensus 333 ~~igYl~i~sF~~~-~~~~l~~~l~~l~---~~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~---~~~~~~~~~~~- 404 (529)
++||||+|++|... ..+++.+++.++. -+++++||||||+|+||++..+..++++|++++. +++...+.+..
T Consensus 106 ~~igYi~i~~F~~~~~~~~~~~~l~~~~~~~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~~ 185 (302)
T 1j7x_A 106 GNIGYLRFDQFADVSVIAKLAPFIVNTVWEPITITENLIIDLRYNVGGSSTAVPLLLSYFLDPETKIHLFTLHNRQQNST 185 (302)
T ss_dssp TTEEEEECCCBCCHHHHHHHHHHHHHHTHHHHTTCSEEEEECTTCCCBCSTTHHHHHHTTSCSSCCCEEEEEEETTTTCC
T ss_pred CCEEEEEEcccCChhhHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChhHHHHHHHHhcCCCcceeeEEEEccCCCCc
Confidence 58999999999875 3566777764321 1589999999999999999999999999999864 55566555442
Q ss_pred eeeecCCC---CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCeEEEccCCCCCceeeeEEECCCC-ceEEEEeeEEEc
Q 009668 405 DIYDTDGT---DALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKGKIQSVFQLSDG-SGLAVTVARYET 480 (529)
Q Consensus 405 ~~~~~~~~---~~~~~~gpv~VL~d~~TaSAaE~fa~~lk~~~~a~iVGe~T~G~~~~~~~~~L~~G-~~l~lt~~~~~~ 480 (529)
..+...+. ....+++|++||||++|+||||+|+++||+++++++||++|+|++..+..++||+| ..+.+++.++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~a~alq~~~~a~vVG~~T~Gk~~~~~~~~L~~g~~~lt~p~~~~~~ 265 (302)
T 1j7x_A 186 DEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEFAYLMQSLSRATIIGEITSGNLMHSKVFPFGDTQLSVTVPIINFID 265 (302)
T ss_dssp EEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHHHHHHHHTTCCEEEESCCCCCCSCEEEEECTTSSEEEEEECEEEEE
T ss_pred eeecccccccCCccCCCCCEEEEeCCCcCcHHHHHHHHHHhCCCEEEEcccCCCCCCCceEEEeCCCcEEEEEEEEEEEC
Confidence 22332221 12236899999999999999999999999999999999999999999999999997 455556689999
Q ss_pred CCCcccCCCCcccceEcCCCCCCChhhHhhhc
Q 009668 481 PAHTDIDKVGVIPDHPLPKTFPKDEDGFCGCL 512 (529)
Q Consensus 481 p~G~~~e~~GV~PDi~V~~~~~~~~~~l~~~l 512 (529)
|+|+.+++.||.|||+|+. ++++++|+
T Consensus 266 p~G~~~~~~Gi~PDi~v~~-----d~~L~~A~ 292 (302)
T 1j7x_A 266 SNGDYWLGGGVVPDAIVLA-----DEALDKAK 292 (302)
T ss_dssp TTSCBCCCSCCCCSEECCG-----GGHHHHHH
T ss_pred CCCCccCCcCcCCCeeeCH-----HHHHHHHH
Confidence 9999999999999999985 45555554
No 6
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.71 E-value=3.2e-17 Score=180.72 Aligned_cols=180 Identities=17% Similarity=0.129 Sum_probs=138.9
Q ss_pred chhHhHHHHHHHHHHHHhhhhccccCCccccchhHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhccCCCCCHHHHHH
Q 009668 111 CVSVLFVQLVFTAMLVTSTTIALSETPSLALSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYM 190 (529)
Q Consensus 111 ~iSyy~~G~l~g~ll~l~i~~~~~~~~~~~~s~~~~~fd~v~~~l~~~Y~~~~~~g~~w~~~~~~~~~~~~~~~~~~f~~ 190 (529)
-++||.||+++.++||+.|+.. +.+.++|+++|+.++++|.. +.++++++++...++++.+.+....|..
T Consensus 373 ~~s~Y~KGalv~~~LD~~lR~~---------s~g~~sldd~mr~l~~~~~~-~~~~~t~~d~~~~~e~~sG~dl~~ff~~ 442 (597)
T 4fgm_A 373 IVSYYAKGALIALSLDLMLRLQ---------SDHKLTLARVMKELWHEFGK-TSIGTADDTVINWLNQYPGIDISDFLKD 442 (597)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHH---------TTTSCCHHHHHHHHHHHHTT-TTCCBCTTHHHHHHHTSTTCCCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhh---------cCCchHHHHHHHHHHHHhCc-CCCCCCHHHHHHHHHHhcCcCHHHHHHH
Confidence 3689999999999999999987 67778899999999999864 3468999999999999988887544444
Q ss_pred HHHHHHHhcCCCCccccChhhhhhhccc------------cCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC
Q 009668 191 AIRKMLATLDDPFTRFLEPEKFNSLRSG------------TQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG 258 (529)
Q Consensus 191 ~i~~~l~~L~Dpht~~l~~~~~~~~~~~------------~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG 258 (529)
.+.+ ...+ |+..++...+++..... ......++|+.+... +++++|..|.+||||++||
T Consensus 443 ~l~~-t~~~--p~~~~l~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~------~~gv~V~~V~~~spA~~AG 513 (597)
T 4fgm_A 443 ALYN-KESL--SLVELLQNFGVMVQKQVPVDDNSVGGKASEQPARVNFGAKYKAS------PQGLDVLNVYHDESAYHAG 513 (597)
T ss_dssp HHHS-CSCC--CCHHHHHTTTEEEEEECCSSTTCCCSCCCSCCCSCCCSEEEEEE------TTEEEEEEECTTSHHHHHT
T ss_pred HHhC-CCCc--chhHHHhhcceEEEeccCCccccccccccccCCccccceEEecc------CCeEEEEEeCCCChHHHCC
Confidence 4443 4444 66666666665432111 112235788887654 4689999999999999999
Q ss_pred CCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEEeeec
Q 009668 259 ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (529)
Q Consensus 259 L~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l~r~~ 312 (529)
|++||+|++|||+++... ++.+.+.. ++|++++|+|.|+|+.++++++...
T Consensus 514 L~~GD~I~aInG~~v~~~---~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 565 (597)
T 4fgm_A 514 LSAGDKIIAIDHLQATEQ---SVKRILERYIPGDTVTIHAFRRDELMTLELTWQE 565 (597)
T ss_dssp CCTTCEEEEETTEECCTT---THHHHHTTCCTTCEEEEEEEETTEEEEEEEECCC
T ss_pred CCCCCEEEEECCEECCHH---HHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecC
Confidence 999999999999999533 44445543 5899999999999999998887643
No 7
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.32 E-value=1.9e-12 Score=113.62 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=79.7
Q ss_pred HhcCCCCccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCC
Q 009668 197 ATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES 275 (529)
Q Consensus 197 ~~L~Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~ 275 (529)
..+.|||+.|+++..++.+.....+...++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 14 ~~~~D~~~~y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~ 93 (121)
T 2kom_A 14 SENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93 (121)
T ss_dssp -------CCCCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTT
T ss_pred ccccCccccccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCC
Confidence 45669999999998887665555566778999886542111112468999999999999999 99999999999999999
Q ss_pred CCHHHHHHHhcCC-CCCcEEEEEeeCCe
Q 009668 276 MGIYDAAERLQGP-EGSPVELTVRSGAE 302 (529)
Q Consensus 276 ~~~~~~~~~l~g~-~G~~v~ltv~r~g~ 302 (529)
++..++.++++.. +|++++|+|.|+++
T Consensus 94 ~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 121 (121)
T 2kom_A 94 KSQEEVVSLLRSTKMEGTVSLLVFRQED 121 (121)
T ss_dssp SCHHHHHHHHHHCCSSCEEEEEEEECCC
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEEeCCC
Confidence 8778888888764 58999999988763
No 8
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.28 E-value=4.8e-12 Score=108.98 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=80.7
Q ss_pred CccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHH
Q 009668 203 FTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDA 281 (529)
Q Consensus 203 ht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~ 281 (529)
|+.|+++++++.+.....+...|+|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++..++
T Consensus 1 ~s~y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~ 80 (111)
T 2koj_A 1 GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80 (111)
T ss_dssp CCCCCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHH
T ss_pred CCcccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 78899988877665555566678999987542211112578999999999999999 99999999999999998888888
Q ss_pred HHHhcCC-CCCcEEEEEeeCCe
Q 009668 282 AERLQGP-EGSPVELTVRSGAE 302 (529)
Q Consensus 282 ~~~l~g~-~G~~v~ltv~r~g~ 302 (529)
..+++.. +|+.++|+|.|+++
T Consensus 81 ~~~l~~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 81 VSLLRSTKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HHHHHHCCCSSEEEEEEEECCC
T ss_pred HHHHHhCCCCCeEEEEEEeCCC
Confidence 8888764 58999999998875
No 9
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.17 E-value=7e-13 Score=114.99 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=75.3
Q ss_pred HHHHHHhcCCCCccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCE
Q 009668 192 IRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDT 271 (529)
Q Consensus 192 i~~~l~~L~Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~ 271 (529)
+.+|+..+ |||+.++.++... ++|+.+.... ...+++|..|.++|||+++||++||+|++|||+
T Consensus 5 ~~~~~~~l-dp~~~~l~~~~~~-----------~~G~~l~~~~----~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~ 68 (114)
T 2edz_A 5 SSGMASTF-NPRECKLSKQEGQ-----------NYGFFLRIEK----DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGV 68 (114)
T ss_dssp CCCCCCCC-CCEEEEEECCTTC-----------CCSCEEECCT----TCCSCEEECCCTTCTTGGGTCCTTCEEEEESSS
T ss_pred hhhHhhcC-CCEEEEEeCCCCC-----------cccEEEEEec----CCCCeEEEEeCCCChHHHcCCCCCCEEEEECCE
Confidence 34577788 9999988775432 2344443221 135789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEE
Q 009668 272 STESMGIYDAAERLQGPEGSPVELTVRSGAEIRH 305 (529)
Q Consensus 272 ~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~ 305 (529)
++.++...++...++. .|++++|+|.|+++..+
T Consensus 69 ~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~~~ 101 (114)
T 2edz_A 69 FVDKEEHAQVVELVRK-SGNSVTLLVLDGDSYEK 101 (114)
T ss_dssp BCSSSCHHHHHHHHHH-TCSEEEEEEECHHHHHH
T ss_pred ECCCCCHHHHHHHHHc-CCCEEEEEEEECCccee
Confidence 9999877888888765 48999999998876543
No 10
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.15 E-value=3.1e-11 Score=105.28 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=71.7
Q ss_pred cCCCCccccChhhhhhhccccCCcceeeeEEEeecCCCC--CCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCC
Q 009668 199 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES 275 (529)
Q Consensus 199 L~Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~--~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~ 275 (529)
..|||+.|+.++++....-. .+. .|+|+.+....+.. ....+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 12 ~~dp~s~y~~~~~~~~v~l~-k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~ 89 (117)
T 2byg_A 12 DLGTENLYFQSMTVVEIKLF-KGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89 (117)
T ss_dssp --------CEEEEEEEEEEE-CBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTT
T ss_pred CCCCcccccCCCceEEEEEE-eCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC
Confidence 34899999999876654322 222 68999886421110 113478999999999999999 99999999999999998
Q ss_pred CCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 276 MGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 276 ~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.+..++...++. .|++++|+|.|+++
T Consensus 90 ~~~~~~~~~l~~-~g~~v~l~v~R~~~ 115 (117)
T 2byg_A 90 VTHEEAVAILKN-TSEVVYLKVGKPTT 115 (117)
T ss_dssp CCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 888888888875 48899999988764
No 11
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.11 E-value=1.2e-10 Score=100.58 Aligned_cols=100 Identities=24% Similarity=0.344 Sum_probs=67.1
Q ss_pred HhcCCCCccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCC
Q 009668 197 ATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES 275 (529)
Q Consensus 197 ~~L~Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~ 275 (529)
..+.|||+.|+++.+.....-. ....|+|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 10 ~~~~d~~t~~~~~~~~~~v~l~--~~~~glG~~l~~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~ 84 (112)
T 2r4h_A 10 GVDLGTENLYFQSMDFYTVELE--RGAKGFGFSLRGGRE---YNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKN 84 (112)
T ss_dssp -------------CCEEEEEEE--CBTTBTSEEEEECGG---GTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTT
T ss_pred cCCCCCcccccCCCceEEEEEE--cCCCccCEEEecccc---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCC
Confidence 4567999999998776543221 222468888754211 13478999999999999999 99999999999999999
Q ss_pred CCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 276 MGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 276 ~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
+...++...++. .|++++|+|.|+++
T Consensus 85 ~~~~~~~~~l~~-~g~~v~l~v~R~~~ 110 (112)
T 2r4h_A 85 MKHSRAIELIKN-GGRRVRLFLKRGET 110 (112)
T ss_dssp CCHHHHHHHHHT-TTTEEEEEEECCEE
T ss_pred CCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 887888877765 68899999988765
No 12
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.09 E-value=2.1e-10 Score=98.80 Aligned_cols=87 Identities=22% Similarity=0.361 Sum_probs=73.0
Q ss_pred CcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCC-CCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL-~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
+.+.|+|+.+..... ..+++|..|.++|||+++|| ++||+|++|||+++.++...++...++..+|+.+.+++.|
T Consensus 10 ~~~~glG~~~~~~~~----~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 85 (112)
T 1qau_A 10 RKVGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 85 (112)
T ss_dssp BTTTBTSEEEEECSS----SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEE
T ss_pred CCCCceeEEEEecCC----CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEe
Confidence 345678988865421 24789999999999999998 9999999999999999777888888877788999999999
Q ss_pred CCeeEEEEEeee
Q 009668 300 GAEIRHLALTRE 311 (529)
Q Consensus 300 ~g~~~~v~l~r~ 311 (529)
+++..+++++..
T Consensus 86 ~g~~~~~~~~~~ 97 (112)
T 1qau_A 86 GPEGFTTHLETT 97 (112)
T ss_dssp CCTTSEEEEEEE
T ss_pred CCcccceEeeee
Confidence 998877777643
No 13
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.08 E-value=2.1e-10 Score=103.11 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=58.2
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEe
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALT 309 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~ 309 (529)
..+++|..|.++|||+++||++||+|++|||+++.+++..++...++..+|++++|+|.|+++..++.++
T Consensus 63 ~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~ 132 (139)
T 2vz5_A 63 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQS 132 (139)
T ss_dssp CCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEEEEECC-------C
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEe
Confidence 4689999999999999999999999999999999987778999999887889999999999987766654
No 14
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.08 E-value=9.3e-11 Score=100.30 Aligned_cols=97 Identities=27% Similarity=0.426 Sum_probs=74.3
Q ss_pred ccChhhhhhhcccc--CCcceeeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHH
Q 009668 206 FLEPEKFNSLRSGT--QGALTGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYD 280 (529)
Q Consensus 206 ~l~~~~~~~~~~~~--~~~~~glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~ 280 (529)
|+.+++++.+.... .....|+|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...+
T Consensus 5 ~~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~ 84 (108)
T 2jre_A 5 YSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSD 84 (108)
T ss_dssp CCSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHH
T ss_pred cccccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 45566665554444 46677899988532111 0123478999999999999999 9999999999999999987788
Q ss_pred HHHHhcCCCCCcEEEEEeeCCee
Q 009668 281 AAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 281 ~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
+..+++. .|+.++|+|.|+++.
T Consensus 85 ~~~~l~~-~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 85 VVEVLRN-AGNPVRLLLIRRLPL 106 (108)
T ss_dssp HHHHHHH-HCSEEEEEEEECCCC
T ss_pred HHHHHHc-CCCeEEEEEEeCCcC
Confidence 8887765 788999999988754
No 15
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=97.68 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=71.3
Q ss_pred CCCccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHH
Q 009668 201 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYD 280 (529)
Q Consensus 201 Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~ 280 (529)
|||+.+.+..- . ......|+|+.+..... .++++|..|.++|||+++||++||+|++|||+++.+++..+
T Consensus 3 Dp~~~~~~~~~-~-----l~~~~~g~G~~~~~~~~----~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~ 72 (98)
T 2jxo_A 3 DPFTMLRPRLC-T-----MKKGPSGYGFNLHSDKS----KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD 72 (98)
T ss_dssp CSSCSSCCEEE-E-----EECTTTCCCEEEECCCS----SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCccCCcEEE-E-----EEeCCCcccEEEEecCC----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 78887765321 1 11223578998864311 24789999999999999999999999999999999977788
Q ss_pred HHHHhcCCCCCcEEEEEeeCCe
Q 009668 281 AAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 281 ~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
+...++...++.+.+++.|+++
T Consensus 73 ~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 73 VVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp HHHHHHTTTTEEEEEECCHHHH
T ss_pred HHHHHHhCCCcEEEEEEECCch
Confidence 8888887777788888888654
No 16
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=96.85 Aligned_cols=79 Identities=32% Similarity=0.480 Sum_probs=64.2
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
.|+|+.+...... ....+++|..|.++|||+++||++||+|++|||+++.++...++...++.. |++++|++.|+++.
T Consensus 14 ~~~G~~l~~~~~~-~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 14 QGFGFLLREEKGL-DGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp TBSCEEEEEEECT-TSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CcccEEEEeccCC-CCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 4688887643211 112368999999999999999999999999999999998778888888764 89999999998764
Q ss_pred E
Q 009668 304 R 304 (529)
Q Consensus 304 ~ 304 (529)
.
T Consensus 92 ~ 92 (96)
T 2v90_A 92 R 92 (96)
T ss_dssp S
T ss_pred c
Confidence 3
No 17
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=100.88 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=75.3
Q ss_pred CCCccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHH
Q 009668 201 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIY 279 (529)
Q Consensus 201 Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~ 279 (529)
|||+.|+.+.+..... ......|+|+.+..... ...++++|..|.++|||+++| |++||+|++|||+++.++...
T Consensus 7 Dp~s~~~~~~~~~~v~--l~~~~~glG~~l~~~~~--~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~ 82 (116)
T 2dm8_A 7 GPATCPIVPGQEMIIE--ISKGRSGLGLSIVGGKD--TPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHE 82 (116)
T ss_dssp CSSSCCCCTTSCEEEE--EECCSSCCCCCCBCCTT--SSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHH
T ss_pred CcccCccCCCCEEEEE--EEECCCcccEEEeCCCC--CCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHH
Confidence 9999999987653322 22334678887753211 011478999999999999999 999999999999999998778
Q ss_pred HHHHHhcCCCCCcEEEEEeeCCee
Q 009668 280 DAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 280 ~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
++...++.. ++.++|+|.|++..
T Consensus 83 ~~~~~l~~~-~~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 83 EAITALRQT-PQKVRLVVYRDEAH 105 (116)
T ss_dssp HHHHHHHTC-CSEEEEEEECCSSC
T ss_pred HHHHHHHhC-CCeEEEEEEeCCcc
Confidence 888888754 48999999888764
No 18
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.03 E-value=3.6e-10 Score=94.55 Aligned_cols=81 Identities=30% Similarity=0.501 Sum_probs=63.2
Q ss_pred cceeeeEEEeecCCC---CCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEe
Q 009668 222 ALTGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (529)
Q Consensus 222 ~~~glG~~~~~~~~~---~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~ 298 (529)
...|+|+.+...... .....+++|..|.++|||+++||++||+|++|||+++.++...+....++. +|++++|+|.
T Consensus 12 ~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~ 90 (97)
T 2w4f_A 12 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVW 90 (97)
T ss_dssp BTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEE
T ss_pred CCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCCeEEEEEE
Confidence 356789888632110 112467999999999999999999999999999999999865555555554 7899999999
Q ss_pred eCCee
Q 009668 299 SGAEI 303 (529)
Q Consensus 299 r~g~~ 303 (529)
|+++.
T Consensus 91 R~g~~ 95 (97)
T 2w4f_A 91 RERET 95 (97)
T ss_dssp CCSSC
T ss_pred eCCcc
Confidence 98764
No 19
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.02 E-value=5.4e-11 Score=100.75 Aligned_cols=95 Identities=26% Similarity=0.356 Sum_probs=72.0
Q ss_pred ccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHH
Q 009668 204 TRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAA 282 (529)
Q Consensus 204 t~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~ 282 (529)
+.|+++++++.+.........|+|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.++...++.
T Consensus 2 S~~~~~~~~~~~~v~l~~~~~g~G~~~~~~~~---~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~ 78 (103)
T 1wfv_A 2 SSGSSGQDFDYFTVDMEKGAKGFGFSIRGGRE---YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAI 78 (103)
T ss_dssp CCCCSCCCSCCEECCEECCTTSSSBCCEEETT---TTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHH
T ss_pred CCCCCccCceEEEEEEecCCCcCCEEEecccc---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 45666666654443333445678887754311 12378899999999999999 999999999999999998778887
Q ss_pred HHhcCCCCCcEEEEEeeCCe
Q 009668 283 ERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 283 ~~l~g~~G~~v~ltv~r~g~ 302 (529)
..++ ..|+.++|+|.|+++
T Consensus 79 ~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 79 ELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp HHHH-HHCSEECEEEECTTC
T ss_pred HHHH-cCCCeEEEEEEECCC
Confidence 7776 568899999998765
No 20
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.02 E-value=2.8e-10 Score=94.19 Aligned_cols=77 Identities=27% Similarity=0.312 Sum_probs=63.0
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
.++|+.+..... .+.+++|..|.++|||+++||++||+|++|||+++.++...++...++. +|++++|++.|+++.
T Consensus 13 ~~~G~~l~~~~~---~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~ 88 (91)
T 2pkt_A 13 GPWGFRLVGGKD---FEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEHE 88 (91)
T ss_dssp SCCSEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECCC
T ss_pred CCCCEEEEccCC---CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCcc
Confidence 356777653211 1246899999999999999999999999999999999977788888876 899999999998765
Q ss_pred E
Q 009668 304 R 304 (529)
Q Consensus 304 ~ 304 (529)
.
T Consensus 89 ~ 89 (91)
T 2pkt_A 89 S 89 (91)
T ss_dssp C
T ss_pred c
Confidence 3
No 21
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=3.7e-10 Score=96.97 Aligned_cols=83 Identities=28% Similarity=0.465 Sum_probs=65.3
Q ss_pred CcceeeeEEEeecCCC---CCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 009668 221 GALTGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~---~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv 297 (529)
....|+|+.+...... .....+++|..|.++|||+++||++||+|++|||+++.+....++...++. +|++++|+|
T Consensus 23 ~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v 101 (110)
T 1x5q_A 23 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 101 (110)
T ss_dssp CSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEE
T ss_pred cCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEEEEE
Confidence 4467899988632110 112467999999999999999999999999999999999876666666654 789999999
Q ss_pred eeCCeeE
Q 009668 298 RSGAEIR 304 (529)
Q Consensus 298 ~r~g~~~ 304 (529)
.|+++.+
T Consensus 102 ~R~g~~~ 108 (110)
T 1x5q_A 102 WRESGPS 108 (110)
T ss_dssp EECSSCC
T ss_pred EECCccC
Confidence 9988643
No 22
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.01 E-value=3.7e-10 Score=98.60 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=70.9
Q ss_pred cCCCCccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCC
Q 009668 199 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMG 277 (529)
Q Consensus 199 L~Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~ 277 (529)
.+|+|+.|+.+...+...-. .+...++||.+...........+++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~v~l~-k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~ 90 (118)
T 3b76_A 12 DLGTENLYFQSMHEKVVNIQ-KDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVS 90 (118)
T ss_dssp ------CCCEEEEEEEEEEE-CCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSC
T ss_pred CCCccccccCCCCcEEEEEE-eCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 34678888887665433221 344467888886432111123468999999999999999 9999999999999999888
Q ss_pred HHHHHHHhcCCCCCcEEEEEeeC
Q 009668 278 IYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 278 ~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
..++...++. .+.+++|+|.|.
T Consensus 91 ~~~~~~~l~~-~~~~v~L~v~R~ 112 (118)
T 3b76_A 91 RSEAVALLKR-TSSSIVLKALEV 112 (118)
T ss_dssp HHHHHHHHHS-CCSEEEEEEEEE
T ss_pred HHHHHHHHHc-CCCeEEEEEEEC
Confidence 8899888875 477899998764
No 23
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.01 E-value=9e-11 Score=103.79 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=77.3
Q ss_pred CCCCccccChhhhhhh--ccccC-CcceeeeEEEeecCCC-CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecC
Q 009668 200 DDPFTRFLEPEKFNSL--RSGTQ-GALTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE 274 (529)
Q Consensus 200 ~Dpht~~l~~~~~~~~--~~~~~-~~~~glG~~~~~~~~~-~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~ 274 (529)
.|||+.|+++.+.+.. ..... ....|+|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp SCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred CCCcccccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 3799999988765432 22222 5567888887542110 0001368899999999999999 9999999999999999
Q ss_pred CCCHHHHHHHhcC------CCCCcEEEEEeeCCe
Q 009668 275 SMGIYDAAERLQG------PEGSPVELTVRSGAE 302 (529)
Q Consensus 275 ~~~~~~~~~~l~g------~~G~~v~ltv~r~g~ 302 (529)
++...+++.+++. ++++.++|+|.|++.
T Consensus 90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 9888888888874 358899999988764
No 24
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.00 E-value=1.1e-09 Score=90.43 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=62.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+..... ..+++|..|.++|||+++||++||+|++|||+++.++...++...++.. |+++.|++.|.+.
T Consensus 15 ~g~G~~~~~~~~----~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 15 QGYGFNLHSDKS----RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp TBCCEEEEECSS----SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCccEEEEccCC----CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 468888764421 3479999999999999999999999999999999998888888888865 8899999988654
No 25
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.99 E-value=3.6e-10 Score=93.25 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=59.2
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCC
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGA 301 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g 301 (529)
..++|+.+... ..+++|..|.++|||+++||++||+|++|||+++...+..++...+.. .+|+++.|+|.|+|
T Consensus 16 ~~~lG~~~~~~------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 16 SLDFGFTIKWD------IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp SSCCSEEEEEE------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCcccEEEEec------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 34577776543 457899999999999999999999999999999955555777776654 36889999998876
Q ss_pred e
Q 009668 302 E 302 (529)
Q Consensus 302 ~ 302 (529)
+
T Consensus 90 ~ 90 (90)
T 2eaq_A 90 K 90 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 26
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.99 E-value=8.4e-10 Score=90.52 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=61.7
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.+++..++.+.++... +++.|++.|+++
T Consensus 12 ~~lG~~l~~~~~---~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 12 APWGFRITGGRD---FHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRITS 86 (87)
T ss_dssp SCCSEEEEEEGG---GTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred CccCEEEecccC---CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence 357777753211 023789999999999999999999999999999999977788888888665 899999999875
No 27
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.98 E-value=2.8e-10 Score=94.29 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=58.3
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++..++..++...++.. |++++|++.|+++.
T Consensus 15 ~~G~~l~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 15 GYGFHLNAIR----GLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ 88 (91)
T ss_dssp BTSCCCBCCT----TCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred cccEEEEecc----CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence 5677664321 13467899999999999999999999999999999977778998888866 89999999988754
No 28
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.97 E-value=1.9e-09 Score=89.65 Aligned_cols=70 Identities=26% Similarity=0.442 Sum_probs=59.9
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.. +.+++|..|.++|||+++||++||+|++|||+++..+...+++..++ +|++++|+|.|++.
T Consensus 19 ~~~G~~l~~-------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 19 HGFGFTVSG-------DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLLGSSS 88 (93)
T ss_dssp SSCCEEEEC-------SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEECCCC
T ss_pred CceeEEEeC-------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEEECCC
Confidence 467887753 24789999999999999999999999999999999987677777776 68999999988753
No 29
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.97 E-value=1.3e-09 Score=89.98 Aligned_cols=75 Identities=21% Similarity=0.381 Sum_probs=60.5
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+..... ..+++|..|.++|||+++||++||+|++|||+++.+++..++...++...++.+.+.+.|+++
T Consensus 14 ~g~G~~~~~~~~----~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 88 (91)
T 1g9o_A 14 NGYGFHLHGEKG----KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88 (91)
T ss_dssp TBCCEEEEECTT----CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred CcccEEEEecCC----CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence 368888764321 347899999999999999999999999999999999888888888887666556666666654
No 30
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.97 E-value=9.2e-10 Score=92.24 Aligned_cols=76 Identities=29% Similarity=0.416 Sum_probs=63.3
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.... ...++++|..|.++|||+++| |++||+|++|||+++.+++..++..+++ ..|+.++|+|.|+++
T Consensus 16 ~~lG~~i~~~~---~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 16 GPLGITISGTE---EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTD 91 (97)
T ss_dssp SCCCEEEECCS---STTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCcCEEEEccc---CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 35888886431 112578999999999999999 9999999999999999887788888887 578899999998875
Q ss_pred e
Q 009668 303 I 303 (529)
Q Consensus 303 ~ 303 (529)
.
T Consensus 92 ~ 92 (97)
T 1n7e_A 92 A 92 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=98.96 E-value=1.3e-09 Score=97.02 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=73.3
Q ss_pred cCCCCccccChhhhhhhccccCCcceeeeEEEeecCCCC---------CCCCcEEEEEecCCCcccCCCCCCCCEEEEEC
Q 009668 199 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASD---------GSSAGLVVISSMPGGPANRAGILSGDVILAID 269 (529)
Q Consensus 199 L~Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~---------~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaIn 269 (529)
+.|+|+.|..+.....+.. ....|+||.+....... ....+++|..|.++|||+++||++||+|++||
T Consensus 17 ~~~~~s~~~~~~r~v~l~r---~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vn 93 (132)
T 3l4f_D 17 PRGSGSDYIIKEKTVLLQK---KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVN 93 (132)
T ss_dssp --CCSCCCCCCCCEEEEEC---CTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEES
T ss_pred cCCCCCCcCCCCEEEEEEE---CCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEC
Confidence 4589999887655433322 22347888876542110 00115899999999999999999999999999
Q ss_pred CEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 270 DTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 270 G~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
|+++..+...++...++. .|+++.|+|.+.+.
T Consensus 94 g~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 94 GQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVTR 125 (132)
T ss_dssp SSBCTTSCHHHHHHHHHH-TTTEEEEEEECCCC
T ss_pred CEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 999999888888888875 67899999877543
No 32
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.96 E-value=3.5e-10 Score=96.06 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=63.3
Q ss_pred cceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEee
Q 009668 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRS 299 (529)
Q Consensus 222 ~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~-G~~v~ltv~r 299 (529)
...|+||.+.... ....+++|..|.++|||+++| |++||+|++|||+++..++..++.++++..+ |++++|+|.|
T Consensus 18 ~~~g~G~~i~~g~---~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 94 (103)
T 1uep_A 18 MESGFGFRILGGD---EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94 (103)
T ss_dssp SSSSCCEEECCCC---STTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCccCEEEeeec---CCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEe
Confidence 4467899885421 113468999999999999999 9999999999999999888788888887543 8899999988
Q ss_pred CCe
Q 009668 300 GAE 302 (529)
Q Consensus 300 ~g~ 302 (529)
++.
T Consensus 95 ~~~ 97 (103)
T 1uep_A 95 KVL 97 (103)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 33
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.96 E-value=3.2e-10 Score=94.40 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=59.8
Q ss_pred cEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEeeCCeeEEEEEeeecc
Q 009668 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTREKV 313 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r~g~~~~v~l~r~~~ 313 (529)
+++|..|.++|||++ ||++||+|++|||+++.++ .++...+... +|++++|+|.|+|+.+++++++...
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~ 71 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQF 71 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCC
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEecc
Confidence 467889999999999 9999999999999999876 6787888765 7999999999999988888776543
No 34
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-10 Score=103.06 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCCccccChhhhh-hhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHH
Q 009668 201 DPFTRFLEPEKFN-SLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIY 279 (529)
Q Consensus 201 Dpht~~l~~~~~~-~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~ 279 (529)
|+|+.|+++++++ .+.....+.+.|.... .. ....+++|..|.++|||+++||++||+|++|||+++..++..
T Consensus 26 ~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~-~~-----~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~ 99 (126)
T 2yuy_A 26 RHFIVYPPESAIQFSYKDEENGNRGGKQRN-RL-----EPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYS 99 (126)
T ss_dssp CCCCCCCCSSCCCSCSSSCCCCSCCCTTSC-CC-----CCCCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHH
T ss_pred cCccccCCHHHHHHHHHhhcCcceeceeee-cc-----cCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHH
Confidence 7999999988876 5555555666551110 00 113568899999999999999999999999999999988888
Q ss_pred HHHHHhcCCCCCcEEEEEeeCCe
Q 009668 280 DAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 280 ~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
++..+++. .|++++|+|.|+++
T Consensus 100 ~~~~~l~~-~g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 100 QVIALIQN-SDTTLELSVMPKDS 121 (126)
T ss_dssp HHHHHHHT-CTTEEEEECCCCCC
T ss_pred HHHHHHHc-CCCEEEEEEEECCC
Confidence 99888875 48999999988764
No 35
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.95 E-value=8.9e-10 Score=96.87 Aligned_cols=99 Identities=20% Similarity=0.357 Sum_probs=66.4
Q ss_pred cCCCCccccChhhhhhhccccCCcceeeeEEEeecCC------CCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCE
Q 009668 199 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTA------SDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDT 271 (529)
Q Consensus 199 L~Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~------~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~ 271 (529)
+.|+|+.|+.+..+..... ...++|+.+..... ......+++|..|.++|||+++| |++||+|++|||+
T Consensus 15 ~~d~~s~~~~p~~v~l~k~----~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~ 90 (123)
T 2iwq_A 15 TENLYFQSMQPRRVELWRE----PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGM 90 (123)
T ss_dssp --------CCCEEEEECCC----TTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTE
T ss_pred cccCCcccCCCEEEEEEec----CCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCE
Confidence 4578999998876654321 22356776532110 00113579999999999999999 9999999999999
Q ss_pred ecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 272 STESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 272 ~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
++.+.+..++.+.++.. +..++|+|.|.+.
T Consensus 91 ~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 91 DLRDASHEQAVEAIRKA-GNPVVFMVQSIIS 120 (123)
T ss_dssp ECTTCCHHHHHHHHHHC-CSSEEEEEECCCC
T ss_pred ECCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence 99997778888888755 4599999987543
No 36
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.95 E-value=1.8e-09 Score=96.26 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=60.3
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEeeCCeeEEEEEeeec
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTREK 312 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r~g~~~~v~l~r~~ 312 (529)
..+++|..|.++|||+ +||++||+|++|||+++.++ .++...+... +|++++++|.|+|+.++++++...
T Consensus 56 ~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~ 126 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNK 126 (134)
T ss_dssp CSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECCC
T ss_pred CCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 3578999999999999 99999999999999999886 5666655543 799999999999999998887654
No 37
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.95 E-value=2e-09 Score=89.86 Aligned_cols=78 Identities=28% Similarity=0.439 Sum_probs=62.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|++++|++.|++.
T Consensus 16 ~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQS 94 (96)
T ss_dssp SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 46788776322111123578999999999999999 99999999999999998887888888875 68899999988764
No 38
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.95 E-value=1.4e-09 Score=92.46 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=62.8
Q ss_pred eeeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+||.+....+. .....+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .|+.++|+|.|+
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 92 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN-TSDFVYLKVAKP 92 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS-CCSEEEEEEECC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence 3688887642111 0112478999999999999999 99999999999999998877888777764 478999999999
Q ss_pred CeeEEEEEee
Q 009668 301 AEIRHLALTR 310 (529)
Q Consensus 301 g~~~~v~l~r 310 (529)
+......+++
T Consensus 93 ~~~~~~~~~p 102 (105)
T 2awx_A 93 TSMYISRHHH 102 (105)
T ss_dssp CC--------
T ss_pred CCCCCccccc
Confidence 8877666654
No 39
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=98.95 E-value=9.9e-10 Score=89.62 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=58.0
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
..++||.+. + + .|..|+++|||+++||++||+|++|||+++...+.+++.++++ ..|++++|+|.+
T Consensus 15 ~g~~Gf~i~--------~-g-~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 15 TGHVGFIFK--------N-G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp TSCCCEEEE--------T-T-EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred CCCeEEEEE--------C-C-EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 346888875 2 2 4899999999999999999999999999999999999999998 789999998854
No 40
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.95 E-value=2.2e-09 Score=88.21 Aligned_cols=73 Identities=23% Similarity=0.437 Sum_probs=57.3
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~-g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+..... .++++|..+ ++|||+ +||++||+|++|||+++.++...++...++ ..+|++++++|.|+++
T Consensus 14 ~g~G~~~~~~~~----~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 14 MGFGFTIADSPG----GGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp TBSSCEEEECTT----SSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred CceeEEEEecCC----CCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 468888764311 246677766 999999 999999999999999999988788888776 4678999999988764
No 41
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.94 E-value=4.2e-10 Score=99.20 Aligned_cols=86 Identities=22% Similarity=0.365 Sum_probs=72.5
Q ss_pred CcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCC-CCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL-~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
+.+.|+|+.+..... ..+++|..|.++|||+++|| ++||+|++|||+++.++...++.+.++...|+.+.|++.|
T Consensus 17 ~~~~glG~~~~~~~~----~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 92 (127)
T 1b8q_A 17 RKVGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92 (127)
T ss_dssp TTTSCCSCCEEECTT----SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEEC
T ss_pred CCCCcEeEEEEecCC----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEe
Confidence 445678888765411 24789999999999999998 9999999999999999777899888887788999999999
Q ss_pred CCeeEEEEEee
Q 009668 300 GAEIRHLALTR 310 (529)
Q Consensus 300 ~g~~~~v~l~r 310 (529)
+++..+++++.
T Consensus 93 ~g~~~~~~~~~ 103 (127)
T 1b8q_A 93 GPEGFTTHLET 103 (127)
T ss_dssp CCCSEEECCCC
T ss_pred CCceEEEEEEE
Confidence 99888777664
No 42
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=88.85 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=60.7
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++...++.. |+++.+++.|++.
T Consensus 13 ~~~G~~l~~g~~---~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 13 APWGFRLQGGKD---FNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred CcccEEEECcCC---CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 357777653210 12368999999999999999999999999999999999878888877754 8899999988764
No 43
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.94 E-value=3.2e-09 Score=89.72 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=59.5
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEEeee
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTRE 311 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l~r~ 311 (529)
.++++|..|.++|||++ ||++||+|++|||+++.++ .++...+.. .+|+.+++++.|+|+.++++++..
T Consensus 6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 75 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLT 75 (100)
T ss_dssp CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECE
T ss_pred CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence 46899999999999995 9999999999999999886 666666654 478999999999999888887654
No 44
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.94 E-value=2.1e-09 Score=91.05 Aligned_cols=79 Identities=28% Similarity=0.340 Sum_probs=63.4
Q ss_pred cceeeeEEEeecCCC---------CCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCc
Q 009668 222 ALTGVGLSIGYPTAS---------DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSP 292 (529)
Q Consensus 222 ~~~glG~~~~~~~~~---------~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~ 292 (529)
...++|+.+...... .....+++|..|.++|||+++||++||+|++|||+++.+...+++...++...|+.
T Consensus 17 ~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~ 96 (104)
T 3sfj_A 17 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV 96 (104)
T ss_dssp TEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSE
T ss_pred CCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCE
Confidence 345688887621110 02245789999999999999999999999999999999887788888888778899
Q ss_pred EEEEEeeC
Q 009668 293 VELTVRSG 300 (529)
Q Consensus 293 v~ltv~r~ 300 (529)
+.+++.|+
T Consensus 97 v~l~v~R~ 104 (104)
T 3sfj_A 97 VRLLVTRQ 104 (104)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99998763
No 45
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.94 E-value=7.5e-10 Score=96.54 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=68.8
Q ss_pred CCCCccccChhhhhh--hccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCC-CCCCCCEEEEECCEecCCC
Q 009668 200 DDPFTRFLEPEKFNS--LRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESM 276 (529)
Q Consensus 200 ~Dpht~~l~~~~~~~--~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~a-GL~~GD~IlaInG~~v~~~ 276 (529)
.|||+.|. +.++.. ...-......|+|+.+..... ...+.++|..|.++|||+++ ||++||+|++|||+++..+
T Consensus 3 ~dP~s~~~-~~~~~~~~~~~~~~~~~~glG~~i~gg~~--~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~ 79 (118)
T 1v6b_A 3 EGAATMFS-PEQIAGKDVRLLRIKKEGSLDLALEGGVD--SPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDY 79 (118)
T ss_dssp CCCCSSSC-HHHHSSCCEEEEEEESCSCCCCEEEEBTT--SSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTC
T ss_pred CCCcceec-ccccCCceEEEEEECCCCccCEEEEcccC--CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 48999874 443221 100000112378887753211 11245899999999999999 9999999999999999998
Q ss_pred CHHHHHHHhcCC---CCCcEEEEEeeC
Q 009668 277 GIYDAAERLQGP---EGSPVELTVRSG 300 (529)
Q Consensus 277 ~~~~~~~~l~g~---~G~~v~ltv~r~ 300 (529)
..+++.+.++.. .|++++|+|.|.
T Consensus 80 ~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 80 TLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 878887777542 488999999874
No 46
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.94 E-value=1.3e-09 Score=91.09 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=60.7
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEeeCCeeEEEEEeeecc
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTREKV 313 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r~g~~~~v~l~r~~~ 313 (529)
..+++|..|.++|||++ ||++||+|++|||+++.++ .++...+... +|+.++|++.|+|+.++++++....
T Consensus 4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~ 75 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPF 75 (94)
T ss_dssp CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCBC
T ss_pred CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEeeC
Confidence 35789999999999999 9999999999999999876 6676666554 7999999999999999888876443
No 47
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.94 E-value=1.8e-09 Score=90.51 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=62.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+..... ...++++|..|.++|||+++| |++||+|++|||+++.++...++...++.. ++.++++|.|++.
T Consensus 15 ~~lG~~l~~~~~--~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 91 (98)
T 2opg_A 15 TGLGLSIVGGSD--TLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQRVRLTLYRDEA 91 (98)
T ss_dssp TBTCEEEEECTT--STTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEECSS
T ss_pred CcccEEEecCCC--CCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcCCC
Confidence 468888764321 111579999999999999999 999999999999999998777887777643 4899999998876
Q ss_pred eE
Q 009668 303 IR 304 (529)
Q Consensus 303 ~~ 304 (529)
..
T Consensus 92 ~~ 93 (98)
T 2opg_A 92 PY 93 (98)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 48
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.93 E-value=6.8e-10 Score=97.58 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=66.5
Q ss_pred CCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEe
Q 009668 220 QGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (529)
Q Consensus 220 ~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~ 298 (529)
.+.+.++|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++.++ .++...++..+|+.+.|+|.
T Consensus 28 ~~~~~~lG~~~~~~~~~-~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~ 104 (124)
T 1wh1_A 28 MNSQDKLGLTVCYRTDD-EDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKNFSLLIA 104 (124)
T ss_dssp SSTTCCCCEEEECCCCC-SSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCSSCCSCCEEEE
T ss_pred cCCCCcccEEEEecCCC-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCEEEEEEE
Confidence 34556788887643211 112579999999999999999 999999999999999864 78888888777899999999
Q ss_pred eCCeeEE
Q 009668 299 SGAEIRH 305 (529)
Q Consensus 299 r~g~~~~ 305 (529)
|+++..+
T Consensus 105 R~g~~~~ 111 (124)
T 1wh1_A 105 RPELQLD 111 (124)
T ss_dssp ECSSCCC
T ss_pred ECCEEee
Confidence 9887543
No 49
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.92 E-value=6.8e-10 Score=98.12 Aligned_cols=81 Identities=27% Similarity=0.381 Sum_probs=65.5
Q ss_pred cceeeeEEEeecCCCC--CCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEe
Q 009668 222 ALTGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (529)
Q Consensus 222 ~~~glG~~~~~~~~~~--~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~ 298 (529)
...++|+.+....... ....+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .|+.+.|+|.
T Consensus 25 ~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 103 (129)
T 2dmz_A 25 DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLV 103 (129)
T ss_dssp TTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEE
T ss_pred CCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 3457888875421110 124578999999999999999 99999999999999999878898888876 8899999999
Q ss_pred eCCee
Q 009668 299 SGAEI 303 (529)
Q Consensus 299 r~g~~ 303 (529)
|+++.
T Consensus 104 R~~~~ 108 (129)
T 2dmz_A 104 RRKTS 108 (129)
T ss_dssp EESSS
T ss_pred eCCcc
Confidence 87753
No 50
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.92 E-value=1e-09 Score=96.87 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=61.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecC-CCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE-SMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~-~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.|+||.+...........+++|..|.++|||+++| |++||+|++|||+++. .++..++..+++. .++.++|+|.|+.
T Consensus 37 ~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 115 (128)
T 2db5_A 37 GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVAREP 115 (128)
T ss_dssp SCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEECC
T ss_pred CccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence 56788774321111112368999999999999999 9999999999999997 8888898888875 6789999998875
Q ss_pred e
Q 009668 302 E 302 (529)
Q Consensus 302 ~ 302 (529)
.
T Consensus 116 ~ 116 (128)
T 2db5_A 116 V 116 (128)
T ss_dssp C
T ss_pred C
Confidence 3
No 51
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.92 E-value=1.7e-09 Score=89.06 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=60.2
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.+++..++...++.. |+++.+++.|+++
T Consensus 13 ~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 13 APWGFRLQGGKD---FNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAIT 87 (89)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEECC
T ss_pred CcccEEEECcCC---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCCC
Confidence 457877743211 12368899999999999999999999999999999988778887777643 8889999988764
No 52
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.92 E-value=1.3e-09 Score=89.91 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=61.7
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccC-CCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~-aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.... .++++|..|.++|||++ +||++||+|++|||+++..++.+++.+++++.++ +++|++.|.+.
T Consensus 13 ~~lG~~i~~~~-----~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 13 EPMGITLKMNE-----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSYR 86 (88)
T ss_dssp SCCCEEEECSC-----GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred CceeEEEEeCC-----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence 46788886421 35789999999999999 8999999999999999998888999999987776 89999987654
No 53
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.92 E-value=9.9e-10 Score=91.92 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=63.2
Q ss_pred eeeeEEEeecCCC-CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~-~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .|+.++|+|.|++
T Consensus 14 ~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 92 (97)
T 2jil_A 14 NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDV 92 (97)
T ss_dssp TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEEC
T ss_pred CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 4678877543110 0113478899999999999999 99999999999999999777888888876 8899999999877
Q ss_pred ee
Q 009668 302 EI 303 (529)
Q Consensus 302 ~~ 303 (529)
+.
T Consensus 93 ~~ 94 (97)
T 2jil_A 93 SE 94 (97)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 54
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.92 E-value=1.5e-09 Score=90.86 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=58.8
Q ss_pred cceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 222 ~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
...|+|+.+... ..+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .+.++.|+|.|.
T Consensus 18 ~~~glG~~~~~~------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 90 (96)
T 2qkv_A 18 AGKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG-ANGKVSMEVTRP 90 (96)
T ss_dssp TTBCCCEEEEEC------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred CCCCccEEEEeC------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCcEEEEEEeC
Confidence 445788877543 3579999999999999999 99999999999999998776776666664 456799998875
No 55
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=9.1e-10 Score=93.42 Aligned_cols=79 Identities=29% Similarity=0.506 Sum_probs=63.4
Q ss_pred cceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 222 ~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
...|+|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .|++++|+|.|+
T Consensus 20 ~~~g~G~~l~~~~~~-~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 97 (104)
T 2djt_A 20 GYAGFGLTLGGGRDV-AGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRP 97 (104)
T ss_dssp CSSSCCEEEECCEET-TEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCC
T ss_pred CCCCccEEEEeccCC-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 346789888642110 002468999999999999999 99999999999999999877888777765 688999999987
Q ss_pred Ce
Q 009668 301 AE 302 (529)
Q Consensus 301 g~ 302 (529)
++
T Consensus 98 g~ 99 (104)
T 2djt_A 98 LS 99 (104)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 56
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.91 E-value=7.9e-10 Score=94.13 Aligned_cols=63 Identities=27% Similarity=0.433 Sum_probs=55.6
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
..+++|..|.++|||+++||++||+|++|||+++.++...++...++ ..|++++|++.|+++.
T Consensus 25 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~~ 87 (106)
T 3ngh_A 25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGDSY 87 (106)
T ss_dssp CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHHHH
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECCee
Confidence 35789999999999999999999999999999999998778888876 5788999999887653
No 57
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.91 E-value=2.3e-09 Score=88.81 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=59.2
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+... .+++|..|.++|||+++||++||+|++|||+++.+++..++...++. .+.++++++.|++.
T Consensus 14 ~g~G~~l~~~-------~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 84 (91)
T 2f5y_A 14 DGFGFTICCD-------SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMVP 84 (91)
T ss_dssp TBTSEEEECS-------SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC-
T ss_pred CCccEEEecC-------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 4678877532 35899999999999999999999999999999998877888887764 46689999988765
No 58
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.90 E-value=2.2e-09 Score=90.76 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=61.4
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+..... ..+++|..|.++|||+++||++||+|++|||+++.++...++...++. .|+++.|++.|++.
T Consensus 17 ~g~G~~l~~~~~----~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 17 NGYGFYLRAGPE----QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEA 90 (102)
T ss_dssp SSSSCEEEECSS----SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred CCccEEEEeecC----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 467888764311 357999999999999999999999999999999999877788777764 58899999987654
No 59
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.90 E-value=1.6e-09 Score=90.79 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=60.5
Q ss_pred eeeeEEEeecCCCC---CCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGYPTASD---GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~~~~~---~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.|+||.+....... ....+++|..|.++|||+++| |++||+|++|||+++.++...++...++. +|++++|+|.|
T Consensus 17 ~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R 95 (98)
T 1ihj_A 17 KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQT 95 (98)
T ss_dssp SSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 46788774321100 012368899999999999999 99999999999999999877788777765 78999999998
Q ss_pred CCe
Q 009668 300 GAE 302 (529)
Q Consensus 300 ~g~ 302 (529)
+++
T Consensus 96 ~g~ 98 (98)
T 1ihj_A 96 FDK 98 (98)
T ss_dssp C--
T ss_pred CCC
Confidence 763
No 60
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.90 E-value=6.2e-10 Score=95.50 Aligned_cols=83 Identities=22% Similarity=0.374 Sum_probs=65.3
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+...........+++|..|.++|||+++| |++||+|++|||+++......++...++. .++.++|+|.|+++
T Consensus 19 ~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 97 (110)
T 1um1_A 19 SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAKSDV 97 (110)
T ss_dssp TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEECCCH
T ss_pred CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46888875432111123479999999999999999 99999999999999998777888777765 48899999999886
Q ss_pred eEEEE
Q 009668 303 IRHLA 307 (529)
Q Consensus 303 ~~~v~ 307 (529)
..+++
T Consensus 98 ~~~~~ 102 (110)
T 1um1_A 98 ETAKK 102 (110)
T ss_dssp HHHHH
T ss_pred ceeEE
Confidence 54433
No 61
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.90 E-value=1.4e-09 Score=96.41 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=64.4
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCC-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~a-GL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
..|+||.+...........+++|..|.++|||+++ ||++||+|++|||+++..++.+++..+++...+..+.|+|.|++
T Consensus 39 ~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118 (130)
T ss_dssp SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence 46789988643211001236899999999999999 99999999999999999998899999999877778999998754
No 62
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=1.6e-09 Score=91.41 Aligned_cols=77 Identities=29% Similarity=0.400 Sum_probs=61.5
Q ss_pred CcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
+...++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...+++..++ .++++.|+|.|+
T Consensus 18 ~~~~~lG~~~~~~~~---~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~v~l~v~R~ 92 (101)
T 1uez_A 18 KAHEGLGFSIRGGSE---HGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK--GSKKLVLSVYSA 92 (101)
T ss_dssp CTTTCSSEEEEECTT---TTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS--SSSSCCEEECCC
T ss_pred CCCCcccEEEeCCCC---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc--CCCeEEEEEEEC
Confidence 345678998864311 134789999999999999999999999999999999987666666654 467899999887
Q ss_pred Ce
Q 009668 301 AE 302 (529)
Q Consensus 301 g~ 302 (529)
++
T Consensus 93 g~ 94 (101)
T 1uez_A 93 GR 94 (101)
T ss_dssp CC
T ss_pred Cc
Confidence 75
No 63
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.89 E-value=4.1e-10 Score=98.57 Aligned_cols=80 Identities=26% Similarity=0.359 Sum_probs=61.8
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCC-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~a-GL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++||.+...........+++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++.. +.+++|+|.|+++
T Consensus 36 ~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~ 114 (120)
T 2iwo_A 36 DSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAGGD 114 (120)
T ss_dssp -CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEECCTT
T ss_pred CCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence 4788877532110001236889999999999999 9999999999999999998888888888754 6679999999876
Q ss_pred eE
Q 009668 303 IR 304 (529)
Q Consensus 303 ~~ 304 (529)
..
T Consensus 115 ~~ 116 (120)
T 2iwo_A 115 VS 116 (120)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 64
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.89 E-value=7.3e-09 Score=88.40 Aligned_cols=85 Identities=25% Similarity=0.387 Sum_probs=64.5
Q ss_pred eeeeEEEeecCCCC--CCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~--~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.++||.+..-.+.. ....+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .+.+++|+|.|+
T Consensus 13 ~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 91 (106)
T 4amh_A 13 KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAKP 91 (106)
T ss_dssp CCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEECC
T ss_pred CccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 45677765322111 113478999999999999999 99999999999999998887888888765 567999999987
Q ss_pred Ce---eEEEEEe
Q 009668 301 AE---IRHLALT 309 (529)
Q Consensus 301 g~---~~~v~l~ 309 (529)
++ ..+++++
T Consensus 92 ~~~~~~~~v~l~ 103 (106)
T 4amh_A 92 GSGEKIMEIKLI 103 (106)
T ss_dssp SSSCSEEEEEEE
T ss_pred CCCCeEEEEEEe
Confidence 64 3445554
No 65
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.89 E-value=3.4e-09 Score=87.60 Aligned_cols=67 Identities=27% Similarity=0.379 Sum_probs=51.1
Q ss_pred cEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEe
Q 009668 242 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALT 309 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~ 309 (529)
+++|..|.++|||+++| |++||+|++|||+++..++..++...++.. +..+.+++.|+++..+++++
T Consensus 24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~~~~v~ 91 (92)
T 3cyy_A 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRDERATLLNVP 91 (92)
T ss_dssp EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEEC----------
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEeCCceeeeeCC
Confidence 68899999999999999 999999999999999977778888888754 45899999999887666553
No 66
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.89 E-value=4.2e-09 Score=97.05 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=66.8
Q ss_pred cceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 222 ~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
...++|+.+... ..+++|..|.++|||++|||++||+|++|||+++.++.......+++..+|+++++++++++
T Consensus 14 ~~~~lG~~~~~~------~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~ 87 (166)
T 1w9e_A 14 QDGKIGLRLKSI------DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 87 (166)
T ss_dssp TTSCCSEEEEEE------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCT
T ss_pred CCCcEeEEEEeC------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 345678877654 46899999999999999999999999999999999986434555666667889999995555
Q ss_pred eeEEEEEee
Q 009668 302 EIRHLALTR 310 (529)
Q Consensus 302 ~~~~v~l~r 310 (529)
+.+++++++
T Consensus 88 ~~~~v~l~~ 96 (166)
T 1w9e_A 88 FERTITMHK 96 (166)
T ss_dssp TCEEEEEEC
T ss_pred CcEEEEEec
Confidence 888888764
No 67
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.88 E-value=4.1e-10 Score=99.26 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=70.4
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
..|+|+.+..... .++++|..|.++|||+++||++||+|++|||+++.+++..++...++...++.+.+++.|+++
T Consensus 19 ~~g~G~~l~~~~~----~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 19 PSGYGFNLHSDKS----KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp SSSCCEEEEECSS----SCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred CCcccEEEEecCC----CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 3578888865421 347999999999999999999999999999999999777888888887778889999999887
Q ss_pred eEE--EEEeeec
Q 009668 303 IRH--LALTREK 312 (529)
Q Consensus 303 ~~~--v~l~r~~ 312 (529)
..+ +++++..
T Consensus 95 ~~~~~~~l~~~~ 106 (128)
T 2kjd_A 95 EFFKKCRVIPSQ 106 (128)
T ss_dssp HHHHHHTCCCCH
T ss_pred ceEEEEEEEecc
Confidence 655 5555543
No 68
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.88 E-value=2.2e-09 Score=89.45 Aligned_cols=81 Identities=27% Similarity=0.364 Sum_probs=63.8
Q ss_pred CcceeeeEEEeecCCC-CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEe
Q 009668 221 GALTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~-~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~ 298 (529)
....|+|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .|+++.|+|.
T Consensus 12 ~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~ 90 (97)
T 2iwn_A 12 KNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLM 90 (97)
T ss_dssp CBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEE
T ss_pred cCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 3456788887643110 0113578999999999999999 99999999999999999887888777765 7889999998
Q ss_pred eCCe
Q 009668 299 SGAE 302 (529)
Q Consensus 299 r~g~ 302 (529)
|+++
T Consensus 91 r~g~ 94 (97)
T 2iwn_A 91 RRGE 94 (97)
T ss_dssp EEEE
T ss_pred eCCC
Confidence 8764
No 69
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.87 E-value=4.7e-09 Score=85.51 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=58.8
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r 299 (529)
.|+|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++.+.++.. +|+++++++.|
T Consensus 11 ~g~G~~i~~~~~---~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 11 RGFGFTVVGGDE---PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBSSEEEEECCS---TTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCEEEEcccC---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 468888754211 12358999999999999999 999999999999999988778888888764 48889888864
No 70
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=2.1e-09 Score=94.98 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=62.9
Q ss_pred CcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEe
Q 009668 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVR 298 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~ 298 (529)
+.+.|+||.+... ...++|..|.++|||+++| |++||+|++|||+++...+..++.+.++. ++|++++|+|.
T Consensus 35 k~~~glG~~i~~~------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~ 108 (126)
T 1wif_A 35 VGNLGLGLVVIQN------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108 (126)
T ss_dssp CCTTCCCCCEEEE------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEE
T ss_pred cCCceEeEEEEcC------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEE
Confidence 4456788876543 3468899999999999999 99999999999999987677899999986 57999999998
Q ss_pred eC
Q 009668 299 SG 300 (529)
Q Consensus 299 r~ 300 (529)
|+
T Consensus 109 R~ 110 (126)
T 1wif_A 109 RG 110 (126)
T ss_dssp SS
T ss_pred EC
Confidence 87
No 71
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.87 E-value=3.7e-09 Score=88.12 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=60.4
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.+....++...++ ..|+.++|++.|+++
T Consensus 16 ~~lG~~~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 16 EQLGIKLVRRTD----EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTIARPGK 90 (95)
T ss_dssp CCCCEEEEECSS----SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEEEESC
T ss_pred CcccEEEEeccC----CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCc
Confidence 467887753311 3479999999999999999 9999999999999999887777766665 358899999988765
No 72
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=5.9e-09 Score=87.83 Aligned_cols=74 Identities=27% Similarity=0.332 Sum_probs=61.1
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
.+|+.+.... ..+.+++|..|.++|||+++||++||+|++|||+++.+..+.++...++. |++++|+|.|+++.
T Consensus 23 ~lG~~~~~~~---~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~ 96 (100)
T 2eeh_A 23 RLGFSVRGGS---EHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGSG 96 (100)
T ss_dssp SCSEEEECCT---TTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSCC
T ss_pred CccEEEEccc---cCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCcC
Confidence 4777775321 11357999999999999999999999999999999999877888888774 78999999998763
No 73
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.87 E-value=2.7e-09 Score=88.82 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=58.9
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+..... ..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++. .+.++.+++.|.+.
T Consensus 16 ~~~G~~l~~~~~----~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r~~~ 89 (95)
T 3r68_A 16 NGYGFYLRAGPE----QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEL 89 (95)
T ss_dssp TBCSCEEEEC------CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEECC-
T ss_pred CcccEEEEecCC----CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEECCcc
Confidence 467887764311 237899999999999999999999999999999999988888888886 56677777665543
No 74
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.86 E-value=4.1e-09 Score=89.71 Aligned_cols=79 Identities=32% Similarity=0.435 Sum_probs=62.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .|+.++|++.|+++
T Consensus 21 ~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 99 (106)
T 3axa_A 21 NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQGA 99 (106)
T ss_dssp SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCCS
T ss_pred CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46788775311111123478999999999999999 99999999999999998877888777764 68899999998875
Q ss_pred e
Q 009668 303 I 303 (529)
Q Consensus 303 ~ 303 (529)
.
T Consensus 100 ~ 100 (106)
T 3axa_A 100 I 100 (106)
T ss_dssp S
T ss_pred c
Confidence 3
No 75
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.86 E-value=4.3e-09 Score=85.70 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=59.2
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++...++. .+.++++++.|++
T Consensus 11 ~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 84 (85)
T 1rgw_A 11 GPWGFRLQGGKD---FNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS-ASYNLSLTLQKSK 84 (85)
T ss_dssp SCCCEEECCCGG---GTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTT-CSSCEEEEEESCC
T ss_pred CccCEEEEeccC---CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 357887742211 1236789999999999999999999999999999999887888877764 4567999998876
No 76
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.86 E-value=4.9e-09 Score=90.21 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=59.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.++|+.+.. ..+++|..|.++|||++|||++||+|++|||+++..++..++.++++...+..++|+|.|..
T Consensus 34 ~~~G~~l~~-------~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 34 GDLGFTLRG-------NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp GCCCEEEES-------SSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CceeEEEeC-------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 457877642 23578999999999999999999999999999999887788888887766667999987653
No 77
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.86 E-value=7.1e-10 Score=94.05 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=63.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
.++||.+..... ....++|..|.++|||+++||++||+|++|||+++.++...++...++. .+++++|+|.|+++.
T Consensus 15 ~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~ 90 (103)
T 1wf7_A 15 APWGFRLQGGKD---FNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA-CTGSLNMTLQRASAA 90 (103)
T ss_dssp SCCSCCEEEETT---TTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHH-CSSEEEEEECCCSCC
T ss_pred CccCEEEecccc---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence 346666642210 1234789999999999999999999999999999999876777766654 478999999999886
Q ss_pred EEEEEe
Q 009668 304 RHLALT 309 (529)
Q Consensus 304 ~~v~l~ 309 (529)
.+++++
T Consensus 91 ~~~~v~ 96 (103)
T 1wf7_A 91 AKSEPV 96 (103)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 655554
No 78
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.85 E-value=4.6e-09 Score=88.53 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=62.3
Q ss_pred eeeeEEEeecCCCC--CCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~--~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+||.+....... ....+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .|+.++|+|.|+
T Consensus 18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 96 (101)
T 2jik_A 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 96 (101)
T ss_dssp TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeC
Confidence 57888886421110 013578999999999999999 99999999999999999887888877765 478899999887
Q ss_pred Ce
Q 009668 301 AE 302 (529)
Q Consensus 301 g~ 302 (529)
++
T Consensus 97 ~~ 98 (101)
T 2jik_A 97 LE 98 (101)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 79
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.85 E-value=2.3e-09 Score=88.56 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=57.8
Q ss_pred EEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEee
Q 009668 243 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTR 310 (529)
Q Consensus 243 ~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~r 310 (529)
++|..|.++|||+++||++||+|++|||+++.++ .++...+...+|+.+.+++.|+|+..+++++.
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~ 71 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQGSPLSLTLIP 71 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETTEEEEEEECC
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECCeEEEEEEEE
Confidence 5688999999999999999999999999999876 67776666567899999999999988887764
No 80
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.84 E-value=5e-09 Score=90.23 Aligned_cols=69 Identities=33% Similarity=0.513 Sum_probs=60.0
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEeeec
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~r~~ 312 (529)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. |+.+.+++.|+++..++++++..
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~ 102 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRETLTLYVTPEV 102 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH--CSSEEEEEEETTEEEEEEECCEE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCEEEEEEEEEee
Confidence 3578999999999999999999999999999999865 677776663 78999999999999888887654
No 81
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.84 E-value=7e-09 Score=85.63 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=57.7
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.++|+.+..... ..+++|..|.++|||+++||++||+|++|||+++.++...++...++ ..|+.+.|+|.|+
T Consensus 19 ~~~G~~~~~~~~----~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 19 EDFGFSVADGLL----EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIA-ESGNKLDLVISRN 90 (91)
T ss_dssp SSSSEEEEECTT----SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred CCccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence 356777654311 35789999999999999999999999999999999987666666665 3588999998775
No 82
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.84 E-value=8.4e-10 Score=95.14 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=63.5
Q ss_pred eeeeEEEee---cCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~---~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.|+|+.+.. .........+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .|+.++|+|.|
T Consensus 15 ~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R 93 (113)
T 2g5m_B 15 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 93 (113)
T ss_dssp SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH-SCSSCEEEEEE
T ss_pred CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 467777654 11111123578999999999999999 99999999999999998877777777765 48999999999
Q ss_pred CCeeEEE
Q 009668 300 GAEIRHL 306 (529)
Q Consensus 300 ~g~~~~v 306 (529)
+++..++
T Consensus 94 ~~~~~~~ 100 (113)
T 2g5m_B 94 ERPGEQS 100 (113)
T ss_dssp CCCCTTS
T ss_pred CCCCCcc
Confidence 8865443
No 83
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=3e-09 Score=92.59 Aligned_cols=79 Identities=28% Similarity=0.328 Sum_probs=61.4
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .+.+++|+|.|+++
T Consensus 36 ~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~g~ 114 (117)
T 2fne_A 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKR-TKGTVTLMVLSSDE 114 (117)
T ss_dssp TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEEEECSC
T ss_pred CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46888775321100002368999999999999999 99999999999999998877888888865 34579999999876
Q ss_pred e
Q 009668 303 I 303 (529)
Q Consensus 303 ~ 303 (529)
.
T Consensus 115 ~ 115 (117)
T 2fne_A 115 T 115 (117)
T ss_dssp E
T ss_pred c
Confidence 4
No 84
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.84 E-value=5.7e-09 Score=86.33 Aligned_cols=73 Identities=27% Similarity=0.358 Sum_probs=59.5
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.++|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .+++++|++.|.+
T Consensus 16 ~~lG~~~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 89 (92)
T 2qg1_A 16 KGLGLSIVGKRN----DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIS 89 (92)
T ss_dssp SCCSEEEECCSS----SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CcccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEccc
Confidence 467888754311 3478999999999999999 99999999999999998777777766653 5778999998875
No 85
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=5.2e-09 Score=88.48 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=52.8
Q ss_pred CcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 241 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.+++|..|.++|||+++| |++||+|++|||+++.+.+..++.+.++.. +..++|+|.|.++
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA-GNPVVFMVQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEECCC
Confidence 478999999999999999 999999999999999997778888888765 4499999987654
No 86
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.84 E-value=6.1e-10 Score=96.63 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=61.5
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecC-CCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE-SMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~-~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++. ..+..++...++. .|+.++|+|.|++
T Consensus 32 ~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 110 (117)
T 2o2t_A 32 GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARGS 110 (117)
T ss_dssp SCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSC
T ss_pred CCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCC
Confidence 35666554221111113478999999999999999 9999999999999998 7777888887765 6889999999987
Q ss_pred eeE
Q 009668 302 EIR 304 (529)
Q Consensus 302 ~~~ 304 (529)
+.+
T Consensus 111 ~~~ 113 (117)
T 2o2t_A 111 LPQ 113 (117)
T ss_dssp CGG
T ss_pred cce
Confidence 643
No 87
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.83 E-value=2.5e-09 Score=90.33 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=62.9
Q ss_pred eeeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+|+.+....+. .....+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .|+.++|+|.|+
T Consensus 15 ~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 93 (102)
T 2i1n_A 15 SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRRR 93 (102)
T ss_dssp TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 4688887642110 0113578999999999999999 99999999999999998877888777764 688999999987
Q ss_pred Cee
Q 009668 301 AEI 303 (529)
Q Consensus 301 g~~ 303 (529)
++.
T Consensus 94 ~~~ 96 (102)
T 2i1n_A 94 QPP 96 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 88
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=3.3e-09 Score=88.35 Aligned_cols=74 Identities=31% Similarity=0.358 Sum_probs=59.5
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
++||.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...++...++. .|+++.|+|.|+++
T Consensus 19 ~~G~~l~gg~~---~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 19 PWGFRLVGGRD---FSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGPS 92 (94)
T ss_dssp CCSCCEECCTT---TTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred ccCEEEECccC---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 46776643110 1246899999999999999999999999999999999877777777765 68899999998765
No 89
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.83 E-value=9.2e-09 Score=85.35 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=60.2
Q ss_pred eeeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+||.+....+. .....+++|..|.++|||+++| |++||+|++|||+++.++...++...++.. +.+++|+|.|+
T Consensus 14 ~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (94)
T 2fe5_A 14 KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKP 92 (94)
T ss_dssp TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECC
T ss_pred CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 3678877532110 1113478999999999999999 999999999999999998778887777643 56899999887
Q ss_pred C
Q 009668 301 A 301 (529)
Q Consensus 301 g 301 (529)
+
T Consensus 93 g 93 (94)
T 2fe5_A 93 G 93 (94)
T ss_dssp C
T ss_pred C
Confidence 6
No 90
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.83 E-value=3.1e-09 Score=86.26 Aligned_cols=69 Identities=23% Similarity=0.410 Sum_probs=57.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+|+.+.. ..+++|..|.++|||+++||++||+|++|||+++.++...++...++. .+++++|++.|+
T Consensus 13 ~g~G~~~~~-------~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 81 (83)
T 2kv8_A 13 AGYGFTLSG-------QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGK-CSGVLHMVIAEG 81 (83)
T ss_dssp SCCSCBCCC-------SSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSSCEEEEEECC
T ss_pred CcccEEEEc-------CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcC
Confidence 457776542 236889999999999999999999999999999999988888888864 456799999875
No 91
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=6.4e-09 Score=87.19 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=61.6
Q ss_pred CcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEee
Q 009668 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRS 299 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r 299 (529)
....|+|+.+... ..+++|..|.+ +|+++||++||+|++|||+++.+++..++.++++.. +|++++|+|.|
T Consensus 18 ~~~~g~G~~i~~~------~~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 89 (96)
T 1ujv_A 18 KGAQGFGFTIADS------PTGQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHR 89 (96)
T ss_dssp CCSSSSSEEEEEE------TTEEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred eCCCceeEEEEcC------CCCEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEE
Confidence 3456789888633 34688999998 378999999999999999999998888988888875 48999999998
Q ss_pred CCe
Q 009668 300 GAE 302 (529)
Q Consensus 300 ~g~ 302 (529)
+++
T Consensus 90 ~g~ 92 (96)
T 1ujv_A 90 GSG 92 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 875
No 92
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.83 E-value=4.9e-09 Score=88.03 Aligned_cols=60 Identities=30% Similarity=0.372 Sum_probs=54.0
Q ss_pred cEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
+++|..|.++|||+++||++||+|++|||+++.+++..++...++ .+|+.++|++.|+++
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALEN 94 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence 458999999999999999999999999999999877788887777 678999999998765
No 93
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.83 E-value=6.5e-10 Score=93.89 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=59.5
Q ss_pred CcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
+...++|+.+.. ..+++|..|.++|||+++||++||+|++|||+++..++..++...++.. +.+++|+|.|+
T Consensus 23 ~~~~g~G~~~~~-------~~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 94 (100)
T 1whd_A 23 RGKDGFGFTICC-------DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRV 94 (100)
T ss_dssp CCSSSSSCBCCC-------SSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCCCeeeEEEeC-------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 344567776542 2468899999999999999999999999999999988778888877653 45699999887
Q ss_pred Ce
Q 009668 301 AE 302 (529)
Q Consensus 301 g~ 302 (529)
+.
T Consensus 95 ~~ 96 (100)
T 1whd_A 95 SG 96 (100)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 94
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.82 E-value=4.6e-09 Score=92.38 Aligned_cols=74 Identities=23% Similarity=0.376 Sum_probs=60.8
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~-g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.... ..+++|..|.++|||+++||++||+|++|||+++.++...++...+. ..+|++++|+|.|+++
T Consensus 39 ~~lG~~l~~~~-----~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 113 (124)
T 3tsv_A 39 DSVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113 (124)
T ss_dssp SCCCEEEEECT-----TSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred CceeEEEecCC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 35777765321 35799999999999999999999999999999999987777777554 3688999999988754
No 95
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.82 E-value=8.7e-09 Score=87.06 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=59.4
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccC-CCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~-aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r~ 300 (529)
.++|+.+..... .....+++|..|.++|||++ +||++||+|++|||+++...+.+++.++++.. .|+.++|+|.|.
T Consensus 21 ~~lG~~i~~~~~-~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 21 EGLGVALVESGW-GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCCCEEEEECCC-SSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CccCEEEEeCCC-CCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 468888753210 00011589999999999999 67999999999999999877778998888764 788999998764
No 96
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.82 E-value=4.1e-09 Score=91.02 Aligned_cols=72 Identities=14% Similarity=0.308 Sum_probs=61.1
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCC-CCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL-~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
|+|+.+... ..+++|..|.++|||+++|| ++||+|++|||+++..+...++..+++.. +.+++|+|.|+++.
T Consensus 38 ~lG~~i~~~------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~~ 110 (113)
T 1va8_A 38 PLGATVRNE------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM-HGTLTFVLIPSSGP 110 (113)
T ss_dssp CCCEEEEEC------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CEEEEEEEECCCCC
T ss_pred ceeEEEEeC------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCcc
Confidence 688887644 45899999999999999999 99999999999999988778888888643 35899999887753
No 97
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.82 E-value=4.1e-09 Score=90.50 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=63.9
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC---CCcEEEEEee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~---G~~v~ltv~r 299 (529)
.|+||.+....... ...+++|..|.++|||+++| |++||+|++|||+++..++.+++.++++... +..++|++.|
T Consensus 25 ~glG~~i~gg~~~~-~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R 103 (109)
T 1wi4_A 25 TGLGLKILGGINRN-EGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103 (109)
T ss_dssp SCCCEEEEECSSSS-SCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred CccCEEEEeccCCC-CCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEe
Confidence 57899886321111 12368999999999999999 9999999999999999988899999888766 8899999988
Q ss_pred CCe
Q 009668 300 GAE 302 (529)
Q Consensus 300 ~g~ 302 (529)
+++
T Consensus 104 ~~~ 106 (109)
T 1wi4_A 104 SGP 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 98
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.81 E-value=4.3e-09 Score=88.61 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=57.8
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.++|+.+.... +++++|..|.++|||+++| |++||+|++|||+++.+++.+++.+.++.. +.+++|+|.+.
T Consensus 24 ~~lG~~l~~~~-----~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 24 EPMGICLKLNE-----KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp SCCSEEEEECT-----TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCeeEEEEeCC-----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 35788776431 3579999999999999999 999999999999999986558888888754 56788887654
No 99
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.80 E-value=8.2e-09 Score=87.63 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=61.0
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++......++.+.++. +++++|+|.|+..
T Consensus 27 ~~lG~~~~~~~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 27 AQLGFNIRGGK---ASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFSG 100 (104)
T ss_dssp CCCSEEEECCS---SSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCCC
T ss_pred CCccEEEEccc---CCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECCC
Confidence 46788776421 11347899999999999999999999999999999999777888888875 7899999987653
No 100
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.80 E-value=6.4e-09 Score=91.04 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=64.7
Q ss_pred CcceeeeEEEeecCCC-CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEE
Q 009668 221 GALTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTV 297 (529)
Q Consensus 221 ~~~~glG~~~~~~~~~-~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~-G~~v~ltv 297 (529)
+...++||.+...... ......++|..|.++|||+++| |++||+|++|||+++.+.+.+++.++++... |++++|+|
T Consensus 24 ~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v 103 (122)
T 1v5q_A 24 DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103 (122)
T ss_dssp CSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEE
Confidence 3456789988642100 0113457999999999999999 9999999999999999877788888887654 88999999
Q ss_pred eeCCe
Q 009668 298 RSGAE 302 (529)
Q Consensus 298 ~r~g~ 302 (529)
.|+++
T Consensus 104 ~R~~~ 108 (122)
T 1v5q_A 104 EFDVA 108 (122)
T ss_dssp EEECC
T ss_pred EECCc
Confidence 98765
No 101
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.80 E-value=1.2e-08 Score=89.45 Aligned_cols=77 Identities=29% Similarity=0.368 Sum_probs=63.6
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEeeC
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSG 300 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r~ 300 (529)
..|+|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++..++..++.+.++.. .|+.++|+|.|+
T Consensus 29 ~~glG~~~~~g~~---~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 105 (123)
T 1ueq_A 29 NMGFGFTIIGGDE---PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105 (123)
T ss_dssp TTSCSEEEECCSS---SSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred CCceeEEEecccC---CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 4578888763211 13468999999999999999 999999999999999988888888888765 489999999887
Q ss_pred Ce
Q 009668 301 AE 302 (529)
Q Consensus 301 g~ 302 (529)
+.
T Consensus 106 ~~ 107 (123)
T 1ueq_A 106 YP 107 (123)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 102
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.80 E-value=5.7e-09 Score=90.66 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=62.5
Q ss_pred eeeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.++||.+...... .....+++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .++.++|+|.|+
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 108 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLD 108 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESS
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEEC
Confidence 5678877432110 0001258899999999999999 99999999999999999888888888876 788999999988
Q ss_pred Cee
Q 009668 301 AEI 303 (529)
Q Consensus 301 g~~ 303 (529)
++.
T Consensus 109 ~~~ 111 (117)
T 1ujd_A 109 LNM 111 (117)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 103
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.80 E-value=3e-09 Score=92.79 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=63.2
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecC--CCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMP--GGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~--gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
|+++.+... ......+++|..|.+ +|||+++||++||+|++|||+++.++.+.++...+... |+.+.|+|.|+++
T Consensus 30 G~~v~l~~~--~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 30 GFSVTVESA--SSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118)
T ss_dssp SSEEEEECT--TSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred eEEEEeccc--cccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence 666664421 111235789999999 99999999999999999999999998778888888766 8899999999887
Q ss_pred eEE
Q 009668 303 IRH 305 (529)
Q Consensus 303 ~~~ 305 (529)
.++
T Consensus 107 ~~~ 109 (118)
T 2yub_A 107 PQR 109 (118)
T ss_dssp CCC
T ss_pred EEe
Confidence 544
No 104
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.80 E-value=1.1e-08 Score=88.37 Aligned_cols=79 Identities=27% Similarity=0.334 Sum_probs=62.3
Q ss_pred eeeeEEEeecCCCCCCC----CcEEEEEecCCCcccC-CCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEe
Q 009668 224 TGVGLSIGYPTASDGSS----AGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~----~~~~V~~V~~gsPA~~-aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~ 298 (529)
.++||.+.........+ -.++|..|.++|||++ +||++||+|++|||+++.++...++.++++. .|+.+.|+|.
T Consensus 22 ~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~ 100 (114)
T 1uew_A 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRII 100 (114)
T ss_dssp SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEEC
T ss_pred CCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 46888875321110001 1458999999999999 9999999999999999999877888888875 7899999999
Q ss_pred eCCee
Q 009668 299 SGAEI 303 (529)
Q Consensus 299 r~g~~ 303 (529)
|+++.
T Consensus 101 r~~~~ 105 (114)
T 1uew_A 101 PQEEL 105 (114)
T ss_dssp CCSCC
T ss_pred eCCcC
Confidence 88763
No 105
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.79 E-value=8.8e-09 Score=85.51 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=59.4
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
++|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++...+..++..+++...+ +++|++.+..
T Consensus 16 ~lG~~i~~~~----~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 88 (93)
T 3o46_A 16 PLGATIKKDE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGS 88 (93)
T ss_dssp CCCEEEEECT----TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred CccEEEEecC----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence 6888876431 13578999999999999999 99999999999999988888899888876554 8888887654
No 106
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.79 E-value=8.9e-09 Score=88.19 Aligned_cols=78 Identities=29% Similarity=0.425 Sum_probs=61.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC--CCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP--EGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~--~G~~v~ltv~r~ 300 (529)
.++|+.+..... .....+++|.+|.++|||+++| |++||+|++|||+++.+++.+++...++.. .+..++|+|.|.
T Consensus 17 ~~lG~~i~g~~~-~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~ 95 (108)
T 3cbz_A 17 NFLGISIVGQSN-ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95 (108)
T ss_dssp CCCCEEEEEECS-STTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECC
T ss_pred CccCEEEEcCcC-CCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeC
Confidence 457777653211 1113578999999999999999 999999999999999998888988888754 455799999886
Q ss_pred Ce
Q 009668 301 AE 302 (529)
Q Consensus 301 g~ 302 (529)
+.
T Consensus 96 ~~ 97 (108)
T 3cbz_A 96 GG 97 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 107
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.79 E-value=1.9e-08 Score=85.70 Aligned_cols=78 Identities=19% Similarity=0.353 Sum_probs=59.3
Q ss_pred ceeeeEEEeecCCC---CCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 223 LTGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 223 ~~glG~~~~~~~~~---~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
..|+|+.+...... .....+++|..|.++|||+ +||++||+|++|||+++.++...+....+. .+|++++++|.|
T Consensus 18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R 95 (107)
T 2h2b_A 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR-KSGKNAKITIRR 95 (107)
T ss_dssp TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEEE
T ss_pred CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-CCCCEEEEEEEE
Confidence 35788887642110 0113478999999999999 999999999999999999986555444444 578899999988
Q ss_pred CCe
Q 009668 300 GAE 302 (529)
Q Consensus 300 ~g~ 302 (529)
+++
T Consensus 96 ~~~ 98 (107)
T 2h2b_A 96 KKG 98 (107)
T ss_dssp ESC
T ss_pred CCC
Confidence 765
No 108
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.79 E-value=5.4e-09 Score=88.19 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=57.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CCCCcEEEEEe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG--PEGSPVELTVR 298 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g--~~G~~v~ltv~ 298 (529)
.|+|+.+... +.+.+|.+|.+||||++|||++||+|++|||.++...+.+++...++. +.|..+.|.|.
T Consensus 28 ~g~G~~l~~~------~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 28 EDYGFDIEEK------NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp SSSSEEEEEE------TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcccEEEEcc------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 4578877654 457889999999999999999999999999999975555888877765 46889988875
No 109
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.79 E-value=4.7e-09 Score=92.59 Aligned_cols=82 Identities=24% Similarity=0.318 Sum_probs=64.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.++...+++..++ .+..+.|+|.|+++.
T Consensus 32 ~~lG~~~~~~~~---~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~--~~~~v~l~v~R~g~~ 106 (128)
T 1uf1_A 32 RSLGLTIRGGAE---YGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLK--SSRHLILTVKDVGRL 106 (128)
T ss_dssp CCCCEEEECCTT---TTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHT--TCSEEEEEEECCSCC
T ss_pred CccCEEEECccc---CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHh--cCCeEEEEEEECCcc
Confidence 356777653210 123789999999999999999999999999999999987677777776 367999999999887
Q ss_pred EEEEEee
Q 009668 304 RHLALTR 310 (529)
Q Consensus 304 ~~v~l~r 310 (529)
.+++++.
T Consensus 107 ~~~~v~~ 113 (128)
T 1uf1_A 107 PHARTTV 113 (128)
T ss_dssp SSCSCCC
T ss_pred ccccccc
Confidence 6655544
No 110
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.78 E-value=8.7e-09 Score=88.62 Aligned_cols=69 Identities=28% Similarity=0.466 Sum_probs=59.4
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEeeec
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~r~~ 312 (529)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+. .|+++.+++.|+++.+++++++..
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~--~g~~v~l~v~R~g~~~~~~v~~~~ 102 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL--TESPLLLEVRRGNDDLLFSIAPEV 102 (112)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHH--HCSSEEEEEEETTEEEEEEECCEE
T ss_pred CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHh--CCCeEEEEEEECCEEEEEEEEEee
Confidence 3578999999999999999999999999999999876 66666663 588999999999998888887543
No 111
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.78 E-value=4.1e-09 Score=89.35 Aligned_cols=61 Identities=36% Similarity=0.471 Sum_probs=55.6
Q ss_pred cEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
+++|..|.++|||+++||++||+|++|||+++.++...++.+.++.. |++++|+|.|+++.
T Consensus 30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~ 90 (103)
T 1v5l_A 30 PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAETR 90 (103)
T ss_dssp EEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTTT
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCeE
Confidence 67899999999999999999999999999999997778998888866 89999999998763
No 112
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.78 E-value=8.5e-09 Score=86.32 Aligned_cols=69 Identities=20% Similarity=0.123 Sum_probs=55.4
Q ss_pred EEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEeeCC--eeEEEEEeeecc
Q 009668 243 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRSGA--EIRHLALTREKV 313 (529)
Q Consensus 243 ~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~-G~~v~ltv~r~g--~~~~v~l~r~~~ 313 (529)
.+|..|.++|||+++||++||+|++|||+++.++ .++...+.... ++.+.++|.|++ ..++++|+-...
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~ 75 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHW 75 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTC
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEcccc
Confidence 4689999999999999999999999999999987 66666664433 478999999986 456666654443
No 113
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=6.3e-09 Score=88.87 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=61.7
Q ss_pred eeeeEEEeec-----CCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 009668 224 TGVGLSIGYP-----TASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (529)
Q Consensus 224 ~glG~~~~~~-----~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv 297 (529)
.++|+.+... ........+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .|++++|++
T Consensus 20 ~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v 98 (108)
T 1q7x_A 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLL 98 (108)
T ss_dssp CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEEE
T ss_pred CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 4688887621 1111113578999999999999999 99999999999999997666777777764 588999999
Q ss_pred eeCCee
Q 009668 298 RSGAEI 303 (529)
Q Consensus 298 ~r~g~~ 303 (529)
.|++.+
T Consensus 99 ~R~~~~ 104 (108)
T 1q7x_A 99 EKGQSP 104 (108)
T ss_dssp ECCCCS
T ss_pred EeCCcc
Confidence 988754
No 114
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=9.4e-09 Score=87.37 Aligned_cols=77 Identities=29% Similarity=0.420 Sum_probs=61.6
Q ss_pred eeeeEEEeecCCC---CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~~~~---~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.|+||.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++...++.. ++.++|+|.|
T Consensus 18 ~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R 96 (105)
T 1wha_A 18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLER 96 (105)
T ss_dssp TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEE
T ss_pred CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 3578877632110 0113478999999999999999 999999999999999998788888888754 8899999988
Q ss_pred CC
Q 009668 300 GA 301 (529)
Q Consensus 300 ~g 301 (529)
++
T Consensus 97 ~~ 98 (105)
T 1wha_A 97 EA 98 (105)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 115
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.77 E-value=1.3e-08 Score=87.18 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=59.3
Q ss_pred eeeeEEEeecCCCC---------CCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEE
Q 009668 224 TGVGLSIGYPTASD---------GSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVE 294 (529)
Q Consensus 224 ~glG~~~~~~~~~~---------~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ 294 (529)
.|+||.+....... ....+++|..|.++|||+++||++||+|++|||+++.++...++...++. .|+.+.
T Consensus 19 ~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~ 97 (109)
T 1q3o_A 19 EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLM 97 (109)
T ss_dssp SCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHH-TTTEEE
T ss_pred CCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEE
Confidence 47888876432100 00126899999999999999999999999999999999988888887764 377888
Q ss_pred EEEeeC
Q 009668 295 LTVRSG 300 (529)
Q Consensus 295 ltv~r~ 300 (529)
|+|.|.
T Consensus 98 l~v~~~ 103 (109)
T 1q3o_A 98 VKVVMV 103 (109)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 888653
No 116
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.77 E-value=1.9e-08 Score=95.59 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=73.7
Q ss_pred cCCCCccccChhhhhhhccccCCcceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCC--
Q 009668 199 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES-- 275 (529)
Q Consensus 199 L~Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~-- 275 (529)
..|||+.++.+.+.....- .....|+|+.+....+. ....+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 6 ~~dp~~~~~~~~~~~~v~~--~~~~~~lG~~i~~g~~~-~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 82 (206)
T 3r0h_A 6 PQEPATAEIKPNKKILIEL--KVEKKPMGVIVCGGKNN-HVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS 82 (206)
T ss_dssp --CTTTCCCCTTSCEEEEE--ECTTSCCCEEEECCSSS-SCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGG
T ss_pred CCCCCcCCCCCCCEEEEEE--EeCCCCcCEEEecccCC-CCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCc
Confidence 4589999988866432221 12336788887532111 112478999999999999998 99999999999999999
Q ss_pred CCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 276 MGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 276 ~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
....++...++...+..++|+|.|+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 110 (206)
T 3r0h_A 83 MTTLKVHQLFHTTYEKAVTLTVFRADPP 110 (206)
T ss_dssp SCHHHHHHHHHSCCSSEEEEEEECCSSC
T ss_pred cCHHHHHHHHHhcCCCceEEEEEecccC
Confidence 6677777777754444499999987654
No 117
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.77 E-value=6.4e-09 Score=88.97 Aligned_cols=77 Identities=27% Similarity=0.429 Sum_probs=61.6
Q ss_pred eeeeEEEeecCCC-CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~-~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+||.+...... .....+++|..|.++|||+++| |++||+|++|||+++..++..++...++..++.+++|+|.|.
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 4788887532111 1113468899999999999999 999999999999999988888999988876667899988775
No 118
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.77 E-value=9.3e-09 Score=86.98 Aligned_cols=73 Identities=26% Similarity=0.436 Sum_probs=59.5
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.|+|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .++++++++.|++
T Consensus 22 ~glG~~~~~~~~----~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 22 TGLGFNIVGGEX----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp TBTSEEEEECC-----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CccCEEEECCCC----CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 367887754311 2378999999999999999 99999999999999998877777777664 6788999998764
No 119
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.76 E-value=1.8e-09 Score=113.15 Aligned_cols=147 Identities=18% Similarity=0.283 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhccccCCcc
Q 009668 145 NRLFLEAWRTIDRAYVDK-TFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQGAL 223 (529)
Q Consensus 145 ~~~fd~v~~~l~~~Y~~~-~~~g~~w~~~~~~~~~~~~~~~~~~f~~~i~~~l~~L~Dpht~~l~~~~~~~~~~~~~~~~ 223 (529)
.+.+.++|+..++.|... .+...+| .+.-|..+..+...++|+++.+..++..+...-... .-
T Consensus 152 ~~ti~qaf~~~y~~~l~~~gi~~~~~---------------~~~~y~~~~~~~~~~~d~~~~~~~~~~~~~V~i~k~-~g 215 (388)
T 3suz_A 152 AQSIGQAFSVAYQEFLRANGINPEDL---------------SQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKH-KG 215 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTS---------------CHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEECCC-SS
T ss_pred HHHHHHHHHHHhhhhccccCcCcccc---------------chhhhcccccccccccchhhhhcccccceEEEEECC-CC
Confidence 456788888888887542 1222222 234455666666677777777777766543322211 12
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r~g 301 (529)
.++|+.+..... .....+++|..|.+||||+++| |++||+|++|||+++.++...++..+++.. .+..++|++.|++
T Consensus 216 e~lG~~i~~~~~-g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~ 294 (388)
T 3suz_A 216 EILGVVVVESGW-GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCP 294 (388)
T ss_dssp CCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECC
T ss_pred CceeEEEEecCC-CCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCcccccccccc
Confidence 346665543210 0001247899999999999999 999999999999999998777777888765 5678999999987
Q ss_pred eeEEEEE
Q 009668 302 EIRHLAL 308 (529)
Q Consensus 302 ~~~~v~l 308 (529)
...++++
T Consensus 295 ~~~~v~l 301 (388)
T 3suz_A 295 PVTTVLI 301 (388)
T ss_dssp SCC----
T ss_pred ccceeeE
Confidence 7665555
No 120
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.76 E-value=9.4e-09 Score=89.12 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=60.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
.++|+.+.... +.+++|..|.++|||+++||++||+|++|||+++.++...+....+. .+|++++|+|.|+++.
T Consensus 30 ~~lG~~~~~~~-----~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~~ 103 (117)
T 1uit_A 30 EPLGISIVSGE-----KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG-QQCDTITILAQYNPHV 103 (117)
T ss_dssp CCCCEEEEECT-----TSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTT-SCCSEEEEEECCCSCC
T ss_pred CCccEEEEccC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCch
Confidence 45777775431 35799999999999999999999999999999999886555544343 5788999999998765
Q ss_pred E
Q 009668 304 R 304 (529)
Q Consensus 304 ~ 304 (529)
.
T Consensus 104 ~ 104 (117)
T 1uit_A 104 H 104 (117)
T ss_dssp C
T ss_pred h
Confidence 4
No 121
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.76 E-value=7.4e-09 Score=91.58 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=61.5
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~-G~~v~ltv~r~g 301 (529)
.|+|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++.++++... |+.++|+|.|++
T Consensus 29 ~g~G~~i~g~~~---~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 29 RGFGFTVVGGDE---PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp SCCSEEEEEEEE---TTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred CcccEEEeCccC---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 367887753210 12358999999999999999 9999999999999999888788888887654 889999998875
Q ss_pred e
Q 009668 302 E 302 (529)
Q Consensus 302 ~ 302 (529)
.
T Consensus 106 ~ 106 (129)
T 2kpk_A 106 P 106 (129)
T ss_dssp C
T ss_pred C
Confidence 3
No 122
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.76 E-value=9.9e-09 Score=91.11 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=61.4
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~-~G~~v~ltv~r~g 301 (529)
.++||.+...........+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++.. +|+.++|+|.|++
T Consensus 48 ~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 127 (131)
T 1wfg_A 48 AMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127 (131)
T ss_dssp TTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred CCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 45777763211111112368899999999999999 999999999999999988888888888754 6789999998865
Q ss_pred e
Q 009668 302 E 302 (529)
Q Consensus 302 ~ 302 (529)
.
T Consensus 128 ~ 128 (131)
T 1wfg_A 128 P 128 (131)
T ss_dssp S
T ss_pred C
Confidence 3
No 123
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.75 E-value=8.2e-09 Score=88.60 Aligned_cols=74 Identities=32% Similarity=0.499 Sum_probs=61.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.... ..+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.++|+|.|++.
T Consensus 26 ~~lG~~l~~~~-----~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 99 (111)
T 2dlu_A 26 SGLGFGIVGGK-----TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDPA 99 (111)
T ss_dssp SCCCEEEECCS-----SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESCT
T ss_pred CccCEEEeccC-----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 45788775321 2579999999999999999 99999999999999998877888877764 57899999988765
Q ss_pred e
Q 009668 303 I 303 (529)
Q Consensus 303 ~ 303 (529)
.
T Consensus 100 ~ 100 (111)
T 2dlu_A 100 G 100 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 124
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.75 E-value=7.1e-09 Score=86.32 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=60.6
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCee
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~ 303 (529)
++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.++...++.+.++... ++++|+|.|+++.
T Consensus 17 ~lG~~l~~g~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 17 PWGFRISGGR---DFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSGP 91 (94)
T ss_dssp CCSBCCEEET---TTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred CccEEEeccc---CCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence 5666654211 0124688999999999999999999999999999999987788888887654 8999999998764
No 125
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.75 E-value=4.4e-09 Score=91.51 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=64.8
Q ss_pred cceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 222 ~~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
...++||.+..... ....+++|..|.++|||+++| |++||+|++|||+++..+...++...++...+..+.+++.|+
T Consensus 25 ~~~~lG~~i~g~~~--~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~ 102 (119)
T 1x6d_A 25 EGAGLGFSLAGGAD--LENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRK 102 (119)
T ss_dssp TTSCCSEEEECCSS--SSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEEC
T ss_pred CCCccCEEEeCCCC--CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 34678888753311 113468999999999999999 999999999999999988778888888776777788888888
Q ss_pred CeeE
Q 009668 301 AEIR 304 (529)
Q Consensus 301 g~~~ 304 (529)
++.+
T Consensus 103 ~~~~ 106 (119)
T 1x6d_A 103 LTPE 106 (119)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7643
No 126
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.6e-08 Score=83.86 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=58.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.++|+.+... ..+++|..|.++|||+++| |++||+|++|||+++ ..+.+++.+.++. .+++++|++.|.
T Consensus 18 ~~lG~~i~~~------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~-~~~~v~l~v~~~ 87 (91)
T 2e7k_A 18 EHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRN-ASGSVILKILSG 87 (91)
T ss_dssp CCCCEEEEES------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHT-CCSSBCEEEECC
T ss_pred CcEeEEEEec------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 4678887653 4689999999999999987 999999999999999 6667888888876 467888888764
No 127
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.75 E-value=1e-08 Score=84.50 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=58.2
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~-G~~v~ltv~r~ 300 (529)
.|+|+.+..... .+.+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++... +.+++|+|.|.
T Consensus 13 ~g~G~~~~~g~~---~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 13 TGFGFRILGGNE---PGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp TBCCEEEEECSS---TTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CccCEEEEcccc---CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 467887753211 12458999999999999999 9999999999999998877788877776433 45889988765
No 128
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.75 E-value=1.7e-08 Score=84.33 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=58.0
Q ss_pred eeeeEEEeec-C---CCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGYP-T---ASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~-~---~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.++||.+... . .......+++|..|.++|||+++||++||+|++|||+++.+++..++...++.. +..++|+|.+
T Consensus 16 ~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~ 94 (96)
T 2ego_A 16 QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETLY 94 (96)
T ss_dssp CCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEC
T ss_pred CCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 4677777531 0 001112367999999999999999999999999999999998778888888765 5588888876
Q ss_pred C
Q 009668 300 G 300 (529)
Q Consensus 300 ~ 300 (529)
+
T Consensus 95 ~ 95 (96)
T 2ego_A 95 G 95 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.74 E-value=1.5e-08 Score=86.54 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=57.0
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+|+.+... ..+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .+.++.|++.|.
T Consensus 14 ~glG~~i~~~------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 84 (106)
T 2la8_A 14 KELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRP 84 (106)
T ss_dssp STTCCEEEEC------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS-CBSCEEEEEEEC
T ss_pred CccCEEEEeC------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 4577766432 3579999999999999999 99999999999999998776777666664 456799988775
No 130
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.74 E-value=4.2e-08 Score=100.14 Aligned_cols=84 Identities=23% Similarity=0.388 Sum_probs=67.9
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEee-C
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRS-G 300 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r-~ 300 (529)
...+|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|++++|+|.| +
T Consensus 228 ~~~lGi~~~~~~----~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~ 301 (324)
T 1y8t_A 228 HASLGVQVTNDK----DTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS 301 (324)
T ss_dssp CEECCEEEESCS----SSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSS
T ss_pred ccccceEeeecc----CCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 355777765321 14578999999999999999999999999999999986 566666644 579999999999 9
Q ss_pred CeeEEEEEeeec
Q 009668 301 AEIRHLALTREK 312 (529)
Q Consensus 301 g~~~~v~l~r~~ 312 (529)
|+.++++++...
T Consensus 302 g~~~~~~v~~~~ 313 (324)
T 1y8t_A 302 GGSRTVQVTLGK 313 (324)
T ss_dssp CCEEEEEEECEE
T ss_pred CCEEEEEEEEcc
Confidence 998888887543
No 131
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.73 E-value=8.5e-09 Score=87.95 Aligned_cols=78 Identities=26% Similarity=0.305 Sum_probs=60.7
Q ss_pred eeeeEEEee---cCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~---~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.++||.+.. .........+++|..|.++|||+++| |++||+|++|||+++..+...++...++. .++.++|+|.|
T Consensus 20 ~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R 98 (107)
T 1wf8_A 20 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIGR 98 (107)
T ss_dssp TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 468888764 11101113478999999999999999 99999999999999998877777777764 57899999987
Q ss_pred CCe
Q 009668 300 GAE 302 (529)
Q Consensus 300 ~g~ 302 (529)
++.
T Consensus 99 ~~~ 101 (107)
T 1wf8_A 99 EKP 101 (107)
T ss_dssp ECC
T ss_pred CCC
Confidence 643
No 132
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.73 E-value=3.7e-08 Score=80.87 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=53.3
Q ss_pred cEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEEe
Q 009668 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 309 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l~ 309 (529)
++.|..+.++|||+++||++||+|++|||+++.++ .++.+.+.. .+|+++++++.|+|+..+++++
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 86 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 86 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence 45567777777889999999999999999999987 566555543 3688999999999988777654
No 133
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.73 E-value=1.2e-08 Score=84.58 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=55.0
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
..++|+.+. ++ +|..|.++|||+++||++||+|++|||+++.+.+..++.++++ ..|++++|+|.+.
T Consensus 23 ~~~lG~~~~--------~G--~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~p~ 89 (90)
T 1y7n_A 23 RYQLGFSVQ--------NG--IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILS-NAVGEIHMKTMPA 89 (90)
T ss_dssp TSCCCEEEE--------TT--EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHH-HCCEEEEEEEECC
T ss_pred ccccCeEec--------CC--EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEEC
Confidence 345677663 23 8999999999999999999999999999998777788888886 3578888888653
No 134
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.4e-08 Score=84.08 Aligned_cols=74 Identities=31% Similarity=0.491 Sum_probs=59.4
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.|+|+.+.... ..+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .+.+++|++.|++
T Consensus 16 ~glG~~l~~~~---~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 90 (93)
T 2dkr_A 16 EGLGFNIMGGK---EQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA-AQGSVKLVVRSGP 90 (93)
T ss_dssp TCCCEEEECSS---SSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHH-CCSEEEEEECCCC
T ss_pred CCccEEEeccc---CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEeCC
Confidence 56888875321 113578999999999999996 99999999999999998877888877764 3568999998764
No 135
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.72 E-value=1.2e-08 Score=88.68 Aligned_cols=76 Identities=24% Similarity=0.377 Sum_probs=61.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+..... ...++++|..|.++|||+++| |++||+|++|||+++.+.+.+++.++++ ..|+.++|+|.|+++
T Consensus 27 ~~lG~~i~~~~~--~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 27 SALGISLTTTSL--RNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVPQ 103 (117)
T ss_dssp CCCCCEEEEECC--SSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBTT
T ss_pred CcccEEEEccCC--CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECCC
Confidence 356776653211 012348999999999999999 9999999999999998888899998888 478999999988765
No 136
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.72 E-value=1.3e-08 Score=89.86 Aligned_cols=60 Identities=18% Similarity=0.407 Sum_probs=53.8
Q ss_pred cEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 242 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++ ..+.+++|+|.|+++
T Consensus 66 gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~-~~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI-ANSRNLIITVRPANQ 126 (128)
T ss_dssp EEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHH-HTTTSEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCc
Confidence 68899999999999999 9999999999999998888888888887 356789999998775
No 137
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.72 E-value=2.3e-08 Score=82.37 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=57.6
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCC-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~a-GL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++.+++..++...++. .+.+++|++.|
T Consensus 16 ~~lG~~i~~~~~---~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 88 (90)
T 1qav_A 16 GGLGISIKGGRE---NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK-TGKEVVLEVKY 88 (90)
T ss_dssp TCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred CCcCEEEEcccC---CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEE
Confidence 467777653211 1246889999999999999 999999999999999998887888877764 47788888865
No 138
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.72 E-value=1.6e-08 Score=93.95 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=61.8
Q ss_pred eeeeEEEee---cCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~---~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.|+|+.+.. .........+++|..|.+||||+++| |++||+|++|||+++.++...+++.++++ .|..++|+|.|
T Consensus 91 ~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R 169 (170)
T 3egg_C 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 169 (170)
T ss_dssp TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence 478888765 11111113468999999999999999 99999999999999999888899888886 67899999987
Q ss_pred C
Q 009668 300 G 300 (529)
Q Consensus 300 ~ 300 (529)
+
T Consensus 170 ~ 170 (170)
T 3egg_C 170 E 170 (170)
T ss_dssp C
T ss_pred C
Confidence 4
No 139
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.72 E-value=3.7e-08 Score=81.97 Aligned_cols=75 Identities=24% Similarity=0.289 Sum_probs=58.2
Q ss_pred eeeEEEeecCC-----CCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 225 GVGLSIGYPTA-----SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 225 glG~~~~~~~~-----~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
++||.+..... ......+++|..|.++|||++ ||++||+|++|||+++.+....++...++ ..++.++|+|.|
T Consensus 14 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R 91 (95)
T 1mfg_A 14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 91 (95)
T ss_dssp SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEE
T ss_pred CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 57887753211 011245799999999999999 99999999999999999887677776665 468899999987
Q ss_pred CC
Q 009668 300 GA 301 (529)
Q Consensus 300 ~g 301 (529)
+.
T Consensus 92 ~~ 93 (95)
T 1mfg_A 92 EV 93 (95)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 140
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=5.4e-09 Score=88.18 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=57.5
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCC-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~a-GL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++.++ ..++...++. .++.++|+|.|+++
T Consensus 21 ~~~G~~~~gg~~---~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~-~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 21 APWGFTLKGGLE---HCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKG-SFRILKLIVRRRNS 95 (100)
T ss_dssp SCCCCCEEEEGG---GTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHT-CCSSCEEEEEECCC
T ss_pred CCcCEEEeccCC---CCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 356766643110 0235789999999999999 9999999999999999986 4667777764 47899999998875
No 141
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.6e-08 Score=88.04 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=61.8
Q ss_pred eeeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.++||.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...++...++. .++.++|+|.|+
T Consensus 28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 106 (120)
T 2eno_A 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 106 (120)
T ss_dssp SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH-HCSEEEEEEEEE
T ss_pred CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 5788888642110 0013578999999999999999 99999999999999999887788777764 478899999886
Q ss_pred Ce
Q 009668 301 AE 302 (529)
Q Consensus 301 g~ 302 (529)
+.
T Consensus 107 ~~ 108 (120)
T 2eno_A 107 LQ 108 (120)
T ss_dssp EE
T ss_pred Cc
Confidence 55
No 142
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.69 E-value=3.7e-08 Score=78.98 Aligned_cols=59 Identities=29% Similarity=0.426 Sum_probs=50.4
Q ss_pred cEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 242 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
+++|..|.++|||+++| |++||+|++|||+++..++..++...++... .++++++.|+|
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g 81 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDE 81 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC--
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeCC
Confidence 68899999999999999 9999999999999999777788888887544 48889888764
No 143
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.69 E-value=2.4e-08 Score=84.95 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=51.6
Q ss_pred EEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 244 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 244 ~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
+|..|.++|||+++||++||+|++|||+++..++..++...++ ..|+.+.|++.|.+.
T Consensus 46 ~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR-AGEKELILTVLSVES 103 (107)
T ss_dssp EEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HCSSEEEEEEECSSC
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCC
Confidence 5999999999999999999999999999999887788888877 368899999987654
No 144
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.68 E-value=3.5e-08 Score=84.12 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=61.1
Q ss_pred ceeeeEEEeecCCC-----CCCCCcEEEEEecCCCcccCC-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEE
Q 009668 223 LTGVGLSIGYPTAS-----DGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELT 296 (529)
Q Consensus 223 ~~glG~~~~~~~~~-----~~~~~~~~V~~V~~gsPA~~a-GL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~lt 296 (529)
..++||.+...... .....+++|..|.++|||+++ ||++||+|++|||+++......++...++. .++++.|+
T Consensus 18 ~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~ 96 (107)
T 1uhp_A 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQ 96 (107)
T ss_dssp SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEE
T ss_pred CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEE
Confidence 35688887532110 011357899999999999999 999999999999999998887888777764 57899999
Q ss_pred EeeCC
Q 009668 297 VRSGA 301 (529)
Q Consensus 297 v~r~g 301 (529)
|.|++
T Consensus 97 v~R~~ 101 (107)
T 1uhp_A 97 VLRRT 101 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98764
No 145
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.68 E-value=6e-08 Score=83.98 Aligned_cols=78 Identities=22% Similarity=0.363 Sum_probs=61.1
Q ss_pred ceeeeEEEeecCCC------CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEE
Q 009668 223 LTGVGLSIGYPTAS------DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVEL 295 (529)
Q Consensus 223 ~~glG~~~~~~~~~------~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~l 295 (529)
..++||.+...... .....+++|..|.++|||+++| |++||+|++|||+++......++...++. .|+.++|
T Consensus 26 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l 104 (117)
T 2ehr_A 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVF 104 (117)
T ss_dssp SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEE
T ss_pred CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 35688887432110 0012478999999999999999 99999999999999998887888887774 6889999
Q ss_pred EEeeCC
Q 009668 296 TVRSGA 301 (529)
Q Consensus 296 tv~r~g 301 (529)
+|.|..
T Consensus 105 ~v~r~~ 110 (117)
T 2ehr_A 105 IVQSLS 110 (117)
T ss_dssp EECCBS
T ss_pred EEEECC
Confidence 997654
No 146
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.68 E-value=1.6e-08 Score=88.74 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=61.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+..... ....+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .+..++|+|.|+++
T Consensus 36 ~glG~~l~~~~~--~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 112 (124)
T 2daz_A 36 NGLGLSLAGNKD--RSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT-APSKVKLVFIRNED 112 (124)
T ss_dssp SCCCEEEECBSS--TTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHH-SCSEEEEEEEECTT
T ss_pred CccCEEEeccCC--CCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 478888753211 112478999999999999999 99999999999999998877787777764 35699999988765
Q ss_pred e
Q 009668 303 I 303 (529)
Q Consensus 303 ~ 303 (529)
.
T Consensus 113 ~ 113 (124)
T 2daz_A 113 A 113 (124)
T ss_dssp H
T ss_pred c
Confidence 3
No 147
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.67 E-value=2.9e-08 Score=83.93 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=58.2
Q ss_pred eeeEEEeecCC-----CCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 225 GVGLSIGYPTA-----SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 225 glG~~~~~~~~-----~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
++||.+..... ......+++|..|.++|||++ ||++||+|++|||+++.+....++...++ ..|++++|+|.|
T Consensus 22 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R 99 (103)
T 1n7t_A 22 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 99 (103)
T ss_dssp CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEEC
T ss_pred CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 67777754211 001245799999999999999 99999999999999999887777777776 468899999987
Q ss_pred C
Q 009668 300 G 300 (529)
Q Consensus 300 ~ 300 (529)
+
T Consensus 100 ~ 100 (103)
T 1n7t_A 100 E 100 (103)
T ss_dssp C
T ss_pred c
Confidence 6
No 148
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.67 E-value=4.5e-08 Score=99.69 Aligned_cols=70 Identities=27% Similarity=0.436 Sum_probs=62.1
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEEeee
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTRE 311 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l~r~ 311 (529)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...++. .+|++++|+|.|+|+.++++++..
T Consensus 243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 313 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ 313 (318)
T ss_dssp CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEESSSCEEEEEEECE
T ss_pred CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence 3578999999999999999999999999999999876 677777765 689999999999999998888754
No 149
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.67 E-value=9e-09 Score=89.29 Aligned_cols=78 Identities=19% Similarity=0.363 Sum_probs=60.6
Q ss_pred ceeeeEEEeecCCCC---CCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 223 LTGVGLSIGYPTASD---GSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 223 ~~glG~~~~~~~~~~---~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
..++||.+....... ....+++|..|.++|||+ +||++||+|++|||+++..+...++...++. .++.+.|+|.|
T Consensus 25 ~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R 102 (117)
T 2csj_A 25 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAIVVKR 102 (117)
T ss_dssp SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEEE
Confidence 367888875421110 013468999999999997 9999999999999999999877777777764 68899999987
Q ss_pred CCe
Q 009668 300 GAE 302 (529)
Q Consensus 300 ~g~ 302 (529)
.+.
T Consensus 103 ~~~ 105 (117)
T 2csj_A 103 PRK 105 (117)
T ss_dssp EEE
T ss_pred CCc
Confidence 654
No 150
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.66 E-value=1.3e-08 Score=87.74 Aligned_cols=76 Identities=17% Similarity=0.324 Sum_probs=60.0
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC-C
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG-A 301 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~-g 301 (529)
..++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.++...++...++. +..+.++|.|+ +
T Consensus 26 ~~~lG~~l~~~~---~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~r~~g 100 (114)
T 1x5n_A 26 SRGLGCSISSGP---IQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS--SRSLTISIVAAAG 100 (114)
T ss_dssp SCCCCEEEEECC---SSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH--CSSEEEEECSSTT
T ss_pred CCceeEEEeecC---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEcCCC
Confidence 356888876321 11347999999999999999999999999999999999876666666653 36899999888 6
Q ss_pred ee
Q 009668 302 EI 303 (529)
Q Consensus 302 ~~ 303 (529)
+.
T Consensus 101 ~~ 102 (114)
T 1x5n_A 101 RE 102 (114)
T ss_dssp TH
T ss_pred Cc
Confidence 54
No 151
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.66 E-value=6.6e-08 Score=82.26 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=51.1
Q ss_pred cEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEEe
Q 009668 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 309 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l~ 309 (529)
++.|..+.++|||+++||++||+|++|||+++.++ .++...+.. .+|++++++|.|+|+..+++++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 104 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 104 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECCEEEEEEEe
Confidence 34455666666779999999999999999999988 444444432 4688999999999988777654
No 152
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.65 E-value=3.6e-08 Score=93.10 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=62.5
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+..... ...+++|..|.+||||+++||++||+|++|||+++.++...++...++. |+.++|+|.|+|+
T Consensus 96 ~~lG~~i~~~~~---~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 96 EGLGLSVRGGLE---FGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIGL 169 (192)
T ss_dssp TCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred CceeEEEEcccc---cCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence 478887742210 1347899999999999999999999999999999999878899888875 8999999999887
No 153
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.65 E-value=5.4e-08 Score=81.32 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=54.3
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~ 298 (529)
.++|+.+..... +...+++|..|.++|||+++||++||+|++|||+++.+++.+++.+.+. ...++++|+
T Consensus 20 ~~~Gf~v~~~~~--~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~---~~~l~ltV~ 89 (94)
T 3kzd_A 20 DTYGFSLSSVEE--DGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS---QPSLGLLVR 89 (94)
T ss_dssp -CCSEEEEEECS--SSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH---SSEEEEEEE
T ss_pred CCcCEEEEecCC--CCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh---CCeEEEEEE
Confidence 457777754211 1123689999999999999999999999999999999988888888775 346777664
No 154
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.65 E-value=7.3e-08 Score=83.25 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=60.7
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~ 302 (529)
.|+||.+.-. ..+..|..+.+ |++.+||++||+|++|||+++.++..+++++.++. +.|+.++|+|.|++.
T Consensus 23 ~G~GFsI~~~------~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 23 KGFGFAIADS------PTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp TBSSEEEEEE------TTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred CcccEEEeCC------CCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 4789998532 23556888887 68899999999999999999999998999999985 569999999999876
Q ss_pred e
Q 009668 303 I 303 (529)
Q Consensus 303 ~ 303 (529)
.
T Consensus 95 ~ 95 (113)
T 3soe_A 95 P 95 (113)
T ss_dssp C
T ss_pred c
Confidence 4
No 155
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.64 E-value=1.1e-07 Score=89.35 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=58.6
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee---CCeeEEEEEee
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS---GAEIRHLALTR 310 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r---~g~~~~v~l~r 310 (529)
..+++|..|.++|||++ ||++||+|++|||+++.+....++...++. .+..+.|+|.| +|+..++.++.
T Consensus 23 ~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~~G~~~~~~v~~ 94 (195)
T 2qbw_A 23 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELIIVREVGNGAKQEIRVRV 94 (195)
T ss_dssp CCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEcCCCCCCceeEeEe
Confidence 45799999999999999 999999999999999999887787777764 35599999998 78777666543
No 156
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.64 E-value=5e-08 Score=79.72 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=55.8
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccC-CCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~-aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~ 298 (529)
.++|+.+..... .+.+++|..|.++|||++ +||++||+|++|||+++.+++..++...++ ..+.+++|++.
T Consensus 14 ~~lG~~i~~~~~---~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~ 85 (87)
T 4e34_A 14 EGLGISITGGKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS-QQRGEIEFEVV 85 (87)
T ss_dssp BCCCEEEEEEGG---GTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEE
T ss_pred CcccEEEEccCC---CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEE
Confidence 457777643211 123588999999999999 799999999999999999888888888776 35667888775
No 157
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.63 E-value=5.1e-08 Score=84.64 Aligned_cols=73 Identities=26% Similarity=0.438 Sum_probs=59.0
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.|+|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.++...+....++. .|+.+.|++.|++
T Consensus 25 ~glG~~l~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 25 TGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 98 (119)
T ss_dssp SCCCEEEEECGG----GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCccEEEecCCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 468888764311 2579999999999999999 99999999999999999876666555553 6788999998764
No 158
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.63 E-value=3.5e-08 Score=85.74 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=60.0
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCC--CCCCCCEEEEECCEecCCCCHHHHHHHhcCCC---CCcEEEEE
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA--GILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTV 297 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~a--GL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~---G~~v~ltv 297 (529)
..++||.+..... ...+++|..|.++|||+++ ||++||+|++|||+++..+...++...++... +.++.|+|
T Consensus 26 ~~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v 102 (119)
T 2cs5_A 26 NGRFGFNVKGGYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV 102 (119)
T ss_dssp SSCCSEEEEEEGG---GTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCcCEEEecccC---CCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEE
Confidence 3457887753211 0225899999999999999 99999999999999999988888887776433 25899999
Q ss_pred eeCCe
Q 009668 298 RSGAE 302 (529)
Q Consensus 298 ~r~g~ 302 (529)
.|+..
T Consensus 103 ~R~~~ 107 (119)
T 2cs5_A 103 RPNAV 107 (119)
T ss_dssp ECCCC
T ss_pred Ecccc
Confidence 88754
No 159
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.63 E-value=3.9e-08 Score=80.95 Aligned_cols=58 Identities=29% Similarity=0.437 Sum_probs=51.0
Q ss_pred cEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 242 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 242 ~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
+++|..|.++|||+++| |++||+|++|||+++.+.+.+++.++++.. +.+++|++.+.
T Consensus 22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~-~~~v~L~v~~~ 80 (88)
T 3e17_A 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRD 80 (88)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEeCC
Confidence 68999999999999999 999999999999999888888988888754 45888888654
No 160
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.3e-08 Score=86.48 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=59.2
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++..++..++...++. .++.+.+++.|++.
T Consensus 19 ~~~G~~l~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 19 GSYGFSLKTVQ----GKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKET 92 (106)
T ss_dssp SSCSCCEECCS----SCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTTT
T ss_pred CCCCEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCch
Confidence 45777764321 1347899999999999999999999999999999998877887777653 47789999987654
No 161
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.63 E-value=6.7e-08 Score=82.20 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=58.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC--CCCCCEEEEECCEecCCCCHHHHHHHhcCCC---CCcEEEEEe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG--ILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTVR 298 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG--L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~---G~~v~ltv~ 298 (529)
.++||.+..... ...+++|..|.++|||+++| |++||+|++|||+++..+...++...++... +..+.|+|.
T Consensus 29 ~~~G~~~~gg~~---~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~ 105 (107)
T 3nfk_A 29 GRFGFNVKGGYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105 (107)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEE
T ss_pred CCCCEEEEccCC---CCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEE
Confidence 467777643210 02358899999999999999 9999999999999999988888888877543 358999887
Q ss_pred eC
Q 009668 299 SG 300 (529)
Q Consensus 299 r~ 300 (529)
|+
T Consensus 106 r~ 107 (107)
T 3nfk_A 106 PN 107 (107)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 162
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.3e-08 Score=85.15 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=56.8
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
++||.+.. ..+++|..|.++|||+ +||++||+|++|||+++.+....++...++. .|++++|+|.|++
T Consensus 22 ~~G~~l~~-------~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 22 DYGFHISE-------SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp SCSBCCCS-------SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred cccEEEec-------CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 56666542 2468899999999995 9999999999999999998877787777765 6899999998875
No 163
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.62 E-value=2.1e-08 Score=85.06 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCccccChhhhhhhccccCCcceeeeEEEeecCC----CCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCC
Q 009668 201 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTA----SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESM 276 (529)
Q Consensus 201 Dpht~~l~~~~~~~~~~~~~~~~~glG~~~~~~~~----~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~ 276 (529)
|||+.+.+..-. +.. ....++||.+..... ......+++|..|.++|||+++||++||+|++|||+++..+
T Consensus 9 ~p~s~~~~~~v~--l~~---~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~ 83 (104)
T 2z17_A 9 SDFSWSQRKLVT--VEK---QDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGF 83 (104)
T ss_dssp --CCCSCCCEEE--EEC---CTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTC
T ss_pred ccCCCCcceEEE--EEe---CCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCC
Confidence 678777665332 111 112346777764110 01123478999999999999999999999999999999987
Q ss_pred CHHHHHHHhcCCCCCcEEEEE
Q 009668 277 GIYDAAERLQGPEGSPVELTV 297 (529)
Q Consensus 277 ~~~~~~~~l~g~~G~~v~ltv 297 (529)
+..++.+.++...+ +++|+|
T Consensus 84 ~~~~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 84 TYKQVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp CHHHHHHHHHHTTT-EEEEEC
T ss_pred CHHHHHHHHHhCCC-cEEEEE
Confidence 77888888876544 777765
No 164
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.62 E-value=4.8e-08 Score=100.73 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=62.0
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEEeeec
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l~r~~ 312 (529)
.+++|..|.++|||++|||++||+|++|||+++.++ .++...+.. .+|++++|+|.|+|+.++++++...
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 333 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT 333 (345)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEE
T ss_pred ceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 578999999999999999999999999999999976 677776654 5899999999999999998887543
No 165
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.61 E-value=8.3e-08 Score=90.67 Aligned_cols=82 Identities=23% Similarity=0.315 Sum_probs=64.3
Q ss_pred cceeeeEEEeecCCCCC-CCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEe
Q 009668 222 ALTGVGLSIGYPTASDG-SSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVR 298 (529)
Q Consensus 222 ~~~glG~~~~~~~~~~~-~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~-G~~v~ltv~ 298 (529)
...|+||.+........ ...+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++... |++++|++.
T Consensus 16 ~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~ 95 (196)
T 1p1d_A 16 PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIE 95 (196)
T ss_dssp TTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEE
T ss_pred CCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEE
Confidence 34678888764311110 12468899999999999999 9999999999999999766688888887654 899999999
Q ss_pred eCCee
Q 009668 299 SGAEI 303 (529)
Q Consensus 299 r~g~~ 303 (529)
|+++.
T Consensus 96 R~~~~ 100 (196)
T 1p1d_A 96 FDVAE 100 (196)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 98753
No 166
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.60 E-value=7.7e-08 Score=84.37 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=58.4
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
..++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++...++.. +.++++++.|
T Consensus 30 ~~~lG~~i~gg~~---~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r 103 (125)
T 3hpk_A 30 QNLIGISIGGGAQ---YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNK 103 (125)
T ss_dssp TSCCCEEEEECSS---CCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE
T ss_pred CCCcCEEEeccCC---CCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 3568887753211 12368999999999999999 999999999999999988888888888764 4468898876
No 167
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.58 E-value=7.3e-08 Score=81.67 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=58.7
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCC-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~a-GL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++||.+..... .+.+++|..|.++|||+++ ||++||+|++|||+++.+.+..++..+++.. +.+++|++.+...
T Consensus 21 ~~lG~~l~~g~~---~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~~ 96 (103)
T 2dc2_A 21 EGLGISITGGKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEVVYVAL 96 (103)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC-CSEEEEEEEECC-
T ss_pred CccCEEEEeccC---CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEecCC
Confidence 467887753211 1236889999999999995 9999999999999999998888888888743 4588888876543
No 168
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.58 E-value=3.6e-08 Score=84.61 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=62.6
Q ss_pred ceeeeEEEeecCCC------CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEE
Q 009668 223 LTGVGLSIGYPTAS------DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVEL 295 (529)
Q Consensus 223 ~~glG~~~~~~~~~------~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~l 295 (529)
..++||.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .++.++|
T Consensus 20 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~l 98 (111)
T 1uju_A 20 GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTV 98 (111)
T ss_dssp TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEE
T ss_pred CCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 35788887632110 0123468999999999999999 99999999999999998888888888875 6889999
Q ss_pred EEeeCCe
Q 009668 296 TVRSGAE 302 (529)
Q Consensus 296 tv~r~g~ 302 (529)
+|.|+..
T Consensus 99 ~v~r~~~ 105 (111)
T 1uju_A 99 LVCDGFE 105 (111)
T ss_dssp CCCCCCC
T ss_pred EEEECCC
Confidence 9987643
No 169
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.57 E-value=3.3e-09 Score=102.27 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=70.5
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcE-EEEEeeCC
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPV-ELTVRSGA 301 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v-~ltv~r~g 301 (529)
..|+|+.+..... ..+++|..|.+||||+++||++||+|++|||+++..+...++..+++.. |+.+ .++|.|+|
T Consensus 19 ~~glG~~l~~~~~----~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g 93 (216)
T 2krg_A 19 PSGYGFNLHSDKS----KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRET 93 (216)
T ss_dssp SSSSCEEECCCSS----SCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHHH
T ss_pred CCCceEEEEecCC----CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEECC
Confidence 3578998864421 2378999999999999999999999999999999966668888777654 7888 99998888
Q ss_pred eeE--EEEEeeecccccc
Q 009668 302 EIR--HLALTREKVSLNP 317 (529)
Q Consensus 302 ~~~--~v~l~r~~~~~~~ 317 (529)
+.. ++++++..+....
T Consensus 94 ~~~~~~v~v~p~~~~~~~ 111 (216)
T 2krg_A 94 DEFFKKCRVIPSQEHLNG 111 (216)
T ss_dssp HHHHHHHTCCCCGGGGSS
T ss_pred EEEEEEEEEEEeeeecCC
Confidence 766 6666665554433
No 170
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.57 E-value=1.5e-07 Score=82.92 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=54.3
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEeeCCeeEEEEE
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAEIRHLAL 308 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~-g~~G~~v~ltv~r~g~~~~v~l 308 (529)
..+++|..|.++|||+++ |++||+|++|||+++.++ .++...+. ..+|+.++++| |+|+ .++++
T Consensus 24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l 88 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT-FHLKT 88 (125)
T ss_dssp CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE-EEEEC
T ss_pred CCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE-EEEEE
Confidence 457899999999999999 999999999999999987 67777776 36789999999 9887 44444
No 171
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.56 E-value=9.7e-08 Score=82.57 Aligned_cols=72 Identities=21% Similarity=0.312 Sum_probs=55.4
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++...+..++.++++... ..++|+|.+
T Consensus 36 ~~lG~~l~~~~~---~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~ 108 (114)
T 2gzv_A 36 NLIGISIGGGAQ---YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNK 108 (114)
T ss_dssp SCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEC
T ss_pred CcEeEEEEeCCC---CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence 457887764311 12368999999999999999 9999999999999997767788888886543 457787754
No 172
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.55 E-value=2.7e-08 Score=85.79 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=56.0
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r 299 (529)
.++|+.+.. ...++|..|.++|||+++||++||+|++|||+++..++.+++.+.++...++.++|+|.|
T Consensus 26 ~~~G~~l~~-------~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 26 GDLGFTLRG-------NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp SCCSCCEES-------SSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred CcccEEEeC-------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 456766542 236789999999999999999999999999999997667888888876666678888864
No 173
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.55 E-value=4.4e-08 Score=83.18 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=59.3
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC----CCCcEEEEEe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP----EGSPVELTVR 298 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~----~G~~v~ltv~ 298 (529)
.|+||.+....+ ......+|..|.+++||+++| |++||+|++|||+++..++.+++.++++.. .++.+++++.
T Consensus 17 ~glG~~i~gg~~--~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~ 94 (103)
T 1ufx_A 17 ATLGIAIEGGAN--TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT 94 (103)
T ss_dssp SSCCEEEECBTT--SSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred CcCCeEEECCCC--CCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 578888853311 001124899999999999999 999999999999999998888888877643 5778888887
Q ss_pred eCC
Q 009668 299 SGA 301 (529)
Q Consensus 299 r~g 301 (529)
|.+
T Consensus 95 r~~ 97 (103)
T 1ufx_A 95 EFN 97 (103)
T ss_dssp CCC
T ss_pred Ecc
Confidence 754
No 174
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.54 E-value=2.4e-07 Score=86.66 Aligned_cols=77 Identities=29% Similarity=0.440 Sum_probs=60.0
Q ss_pred eeeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.++...+....++. .|+.+++++.|+
T Consensus 16 ~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r~ 94 (196)
T 3gsl_A 16 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMRR 94 (196)
T ss_dssp TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEEE
T ss_pred CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEec
Confidence 4578877542111 0113478999999999999999 99999999999999999876666666653 588999999886
Q ss_pred C
Q 009668 301 A 301 (529)
Q Consensus 301 g 301 (529)
+
T Consensus 95 ~ 95 (196)
T 3gsl_A 95 K 95 (196)
T ss_dssp C
T ss_pred C
Confidence 5
No 175
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.54 E-value=2.4e-07 Score=87.68 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=60.9
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccCC-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~a-GL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
..++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++.++...++..+++. .|++++|++.|++
T Consensus 18 ~~~lG~~i~~~~~---~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 18 GTTLGLTVSGGID---KDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGERVVLEVEYEL 93 (200)
T ss_dssp TCCCCEEEECCTT---SSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CCCCCEEEecccC---CCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence 3568888753211 1346899999999999999 999999999999999999987888777753 5889999998865
No 176
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.51 E-value=1.3e-07 Score=97.54 Aligned_cols=71 Identities=30% Similarity=0.493 Sum_probs=62.5
Q ss_pred CcEEEEEecCCCcccCCCCCC-----------CCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEE
Q 009668 241 AGLVVISSMPGGPANRAGILS-----------GDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLAL 308 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~-----------GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l 308 (529)
.+++|..|.++|||++|||++ ||+|++|||+++.++ .++...+.. .+|++++|+|.|+|+.+++++
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v 328 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHKEKISV 328 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEEEEEEE
Confidence 478999999999999999999 999999999999988 677777743 579999999999999998888
Q ss_pred eeecc
Q 009668 309 TREKV 313 (529)
Q Consensus 309 ~r~~~ 313 (529)
+....
T Consensus 329 ~l~~~ 333 (348)
T 3qo6_A 329 TLEPK 333 (348)
T ss_dssp ECEEC
T ss_pred EEccC
Confidence 76543
No 177
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.49 E-value=2e-07 Score=95.15 Aligned_cols=67 Identities=34% Similarity=0.536 Sum_probs=59.9
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEeee
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 311 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~r~ 311 (529)
.+++|..|.++|||+++||++||+|++|||+++.++ .++.+.++. ++++.|++.|+|+.+++++++.
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~--~~~v~l~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRETLTLYVTPE 322 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT--CSSEEEEEEETTEEEEEEECCE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC--CCeEEEEEEECCEEEEEEEEEe
Confidence 578999999999999999999999999999999876 777777763 6899999999999998888753
No 178
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=97.89 E-value=1.4e-08 Score=87.61 Aligned_cols=71 Identities=27% Similarity=0.444 Sum_probs=53.0
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccC-CCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~-aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~ 298 (529)
.|+|+.+..... .+.+++|..|.++|||++ +||++||+|++|||+++.+.+..++...++. .+.+++|+|.
T Consensus 39 ~glG~~l~~g~~---~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~-~~~~v~l~V~ 110 (112)
T 2lob_A 39 EGLGISITGGKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVV 110 (112)
Confidence 467777643210 123688999999999999 9999999999999999987666777777764 3445666653
No 179
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.49 E-value=1.1e-07 Score=99.55 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=63.1
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCe
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAE 302 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~ 302 (529)
++|+.+.... ..+++|..|.+||||+++||++||+|++|||.++.+.+.+++...+++ .+|++++|++.|+++
T Consensus 20 ~lG~~i~gg~-----~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~ 93 (391)
T 3tsz_A 20 SVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 93 (391)
T ss_dssp SCCEEEEEET-----TTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHH
T ss_pred ceeEEEEecC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCc
Confidence 5788775421 358999999999999999999999999999999999888999888876 689999999998753
No 180
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.47 E-value=4.6e-08 Score=83.93 Aligned_cols=74 Identities=28% Similarity=0.452 Sum_probs=59.3
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.|+|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.++...++...++ ..++.+.|++.|+++
T Consensus 26 ~glG~~l~~~~~----~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~r~~~ 100 (113)
T 1um7_A 26 TGLGFNIVGGED----GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK-RAGQSVTIVAQYRPE 100 (113)
T ss_dssp SCSSBCCBCCST----TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHH-SCCSEEEEEEECCHH
T ss_pred CcccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCcEEEEEEECcc
Confidence 467777653311 3578899999999999999 9999999999999999987777777776 367889999887643
No 181
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.5e-07 Score=81.40 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=50.0
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
.+++|..|.++|||+++||++||+|++|||+++..+...++.+.+++ ..+.|+|.|..
T Consensus 44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 44 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp EEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 36889999999999999999999999999999998877788888863 37888887653
No 182
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.44 E-value=4e-07 Score=75.95 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=58.9
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEee
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRS 299 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r 299 (529)
.++|+.+... ..+..+|..+.+||||++.| |.+||+|++|||+++..++.++++++|+. +.|.+++|.+.+
T Consensus 16 ~~LG~tI~~~-----g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~ 88 (95)
T 3gge_A 16 DSLGLTITDN-----GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE 88 (95)
T ss_dssp SCCCEEEECS-----SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCceEEEEcC-----CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence 4678887632 13567899999999999987 99999999999999999999999999876 456788887754
No 183
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.44 E-value=4.8e-07 Score=96.54 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=60.8
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEEeeec
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l~r~~ 312 (529)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|++++++|.|+++.++++++...
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~ 352 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTD 352 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBC
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 578999999999999999999999999999999987 566655543 6799999999999999888877543
No 184
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.39 E-value=4.8e-07 Score=85.71 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=58.5
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.++|+.+... ..+++|.+|.++|||+++| |++||+|++|||+++.+++..++...++. .+..+.|+|.|.
T Consensus 125 ~~lG~~~~~~------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~ 195 (206)
T 3r0h_A 125 KELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRP 195 (206)
T ss_dssp CCCCEEEEEC------SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CccCeEEEcC------CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 3577777633 3478999999999999999 99999999999999998887888888864 567889988774
No 185
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.38 E-value=3.1e-07 Score=87.81 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=53.9
Q ss_pred CCcEEEEEecCCCcccCCCCCCC-CEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC--eeEEEEEe
Q 009668 240 SAGLVVISSMPGGPANRAGILSG-DVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA--EIRHLALT 309 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~G-D~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g--~~~~v~l~ 309 (529)
..+++|.+|.++|||++|||++| |+|++|||+++.++.. ....++...+|+++++++.|++ +..+++++
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~-~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~ 86 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDND-TLKDLLKANVEKPVKMLIYSSKTLELRETSVT 86 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSS-HHHHHHHHTTTSCEEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHH-HHHHHHhcCCCCEEEEEEEecCCceEEEEEEc
Confidence 34789999999999999999999 9999999999998741 1123344467899999998864 45555554
No 186
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.38 E-value=5.8e-07 Score=84.04 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=61.6
Q ss_pred eeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 225 GVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 225 glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .++.+.|+|.|++
T Consensus 112 ~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 190 (196)
T 3gsl_A 112 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKPS 190 (196)
T ss_dssp BSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCEEEEEEEEEES
T ss_pred CceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCCeEEEEEeCCC
Confidence 567766432111 0112468999999999999999 99999999999999999777888888864 5789999999877
Q ss_pred eeE
Q 009668 302 EIR 304 (529)
Q Consensus 302 ~~~ 304 (529)
...
T Consensus 191 ~~~ 193 (196)
T 3gsl_A 191 NAE 193 (196)
T ss_dssp CCC
T ss_pred Ccc
Confidence 643
No 187
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.38 E-value=2.4e-07 Score=91.76 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=62.3
Q ss_pred ceeeeEEEeecCCCCCCCCcEEEEEecCCCcccC-CCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 223 ~~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~-aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
..|+||.+....+ ...+++|..|.+||||++ +||++||+|++|||+++.++...+++.+++.. |++++|+|.|.+
T Consensus 88 ~~glGf~I~gg~d---~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~~ 163 (263)
T 1z87_A 88 AGGLGISIKGGRE---NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYMK 163 (263)
T ss_dssp TCCCCCEEEEETT---TTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECCS
T ss_pred CCCEeEEEeeccC---CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeCc
Confidence 3578888754211 124689999999999999 79999999999999999999888988888754 778999998865
Q ss_pred e
Q 009668 302 E 302 (529)
Q Consensus 302 ~ 302 (529)
+
T Consensus 164 ~ 164 (263)
T 1z87_A 164 E 164 (263)
T ss_dssp S
T ss_pred c
Confidence 4
No 188
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.36 E-value=6e-07 Score=84.87 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=56.2
Q ss_pred CcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeE
Q 009668 241 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIR 304 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~ 304 (529)
.+++|..|.++|||+++| |++||+|++|||+++.+++..++.+.++. .++.+.|++.|+++..
T Consensus 135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 198 (200)
T 2qt5_A 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYDVSVM 198 (200)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEEEEC-
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCccC
Confidence 468899999999999999 99999999999999997777899888887 8899999999887643
No 189
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.35 E-value=8.3e-07 Score=94.29 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=60.1
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEeeCCeeEEEEEeeec
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAEIRHLALTREK 312 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~-g~~G~~v~ltv~r~g~~~~v~l~r~~ 312 (529)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+. ..+|++++|+|.|+|+.++++++...
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 333 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT 333 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECC
Confidence 578999999999999999999999999999999987 55555554 35789999999999999888877543
No 190
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.34 E-value=4.2e-07 Score=86.90 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=55.5
Q ss_pred CcEEEEEecCCCcccCCCCCC-CCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC--eeEEEEEeee
Q 009668 241 AGLVVISSMPGGPANRAGILS-GDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA--EIRHLALTRE 311 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~-GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g--~~~~v~l~r~ 311 (529)
.+++|..|.++|||++|||++ ||+|++|||+ +.++ +++.+.++..+|+++.|+|.|++ +..++++++.
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~ 182 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPN 182 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECCC
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEec
Confidence 578999999999999999999 9999999998 8776 45555555557899999998864 4567777653
No 191
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.33 E-value=4.5e-07 Score=96.68 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=62.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.... ..+++|..|.+||||+++||++||+|++|||+++.+.+..++...++. .+|++++|+|.|+++
T Consensus 11 ~~lG~~i~gg~-----~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~ 85 (468)
T 3shw_A 11 DSVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 85 (468)
T ss_dssp SSCCEEEEEET-----TTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHH
T ss_pred CccceEEEccC-----cCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 35677764321 357999999999999999999999999999999999888888888875 478999999998654
No 192
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.31 E-value=1.1e-06 Score=99.21 Aligned_cols=86 Identities=27% Similarity=0.432 Sum_probs=67.5
Q ss_pred eeeeEEEeecCCC--CCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 224 ~glG~~~~~~~~~--~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
.|+||.+....+. .....+++|..|.+||||+++| |++||+|++|||+++.++...++...++. .|++++|+|.|+
T Consensus 70 ~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 148 (721)
T 2xkx_A 70 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMRR 148 (721)
T ss_pred CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc-cccccceEEEec
Confidence 5889988532110 0113468999999999999999 99999999999999999988888877764 688999999987
Q ss_pred Ce----eEEEEEee
Q 009668 301 AE----IRHLALTR 310 (529)
Q Consensus 301 g~----~~~v~l~r 310 (529)
+. ..++++.+
T Consensus 149 ~~~~~~~~~v~l~k 162 (721)
T 2xkx_A 149 KPPAEKVMEIKLIK 162 (721)
T ss_pred ccccccceeeeeee
Confidence 64 35566654
No 193
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.28 E-value=9.5e-08 Score=97.88 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=0.0
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEeeec
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~r~~ 312 (529)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...++ .|++++|+|.|+|+.+++++++..
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~--~~~~v~l~v~R~g~~~~~~v~p~~ 321 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIK--RESTLNMVVRRGNEDIMITVIPEE 321 (332)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEECCCH--HHHHHHHh--CCCeEEEEEEECCEEEEEEEEEee
Confidence 478899999999999999999999999999999876 56666665 388999999999999888887643
No 194
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.21 E-value=2.4e-06 Score=90.70 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=59.2
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEeee
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 311 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~r~ 311 (529)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.++... ..+.|+|.|+++...+++++.
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~~~~ 430 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGNESIYLLMRLE 430 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCC-CeEEEEEEECCEEEEEEEEec
Confidence 478999999999999999999999999999999876 78888887644 489999999999888877653
No 195
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.18 E-value=2.2e-06 Score=91.34 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=58.5
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEe
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALT 309 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~ 309 (529)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.++. .+..+.|+|.|+|+...++++
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l~ 451 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQE-KKKELLVQVLRGPGSMYLLVI 451 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTS-SCSCEEEEEEETTEEEEEEEC
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhc-CCCeEEEEEEECCEEEEEEeC
Confidence 367899999999999999999999999999999876 788888875 678999999999998877663
No 196
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.17 E-value=1.6e-06 Score=81.70 Aligned_cols=75 Identities=31% Similarity=0.458 Sum_probs=59.9
Q ss_pred eeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCC
Q 009668 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (529)
Q Consensus 225 glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g 301 (529)
++|+.+....... ...+++|..|.++|||+++| |++||+|++|||+++.+.+..++.+.++.. +..+.|+|.|++
T Consensus 120 ~lG~~~~~~~~~~-~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 120 ELGITISSPSSRK-PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCCEEECSCSSS-TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CcCEEEECCCCCC-CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 4676664321100 12478999999999999999 999999999999999986678888888765 899999998875
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.14 E-value=8.5e-07 Score=94.53 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=58.8
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEeeCCeeEEEEEee
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTR 310 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g-~~G~~v~ltv~r~g~~~~v~l~r 310 (529)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|++++|+|.|+|+.++++++.
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~ 354 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCEEECCCC-
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence 478999999999999999999999999999999988 677776654 57999999999999887766654
No 198
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=98.04 E-value=1e-05 Score=87.70 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=56.8
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCC-----------HHHHHHHhcCCCCCcEEEEEeeCCeeEEEEE
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMG-----------IYDAAERLQGPEGSPVELTVRSGAEIRHLAL 308 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~-----------~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l 308 (529)
..+++|..|.++|||+++ |++||+|++|||++|.... +..++. ...+|++++|+|.|+|+.+++++
T Consensus 276 ~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~--~~~~Gd~v~l~v~R~Gk~~~v~V 352 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLIS--QKFAGDIAEIGIIRAGEHKKVQV 352 (539)
T ss_dssp SBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHH--TSCTTCEEEEEEEETTEEEEEEE
T ss_pred cCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHH--cCCCCCEEEEEEEECCEEEEEEE
Confidence 358999999999999877 9999999999999996531 122222 34689999999999999999988
Q ss_pred eeec
Q 009668 309 TREK 312 (529)
Q Consensus 309 ~r~~ 312 (529)
+-..
T Consensus 353 tl~~ 356 (539)
T 4fln_A 353 VLRP 356 (539)
T ss_dssp ECBC
T ss_pred EEcc
Confidence 7543
No 199
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.76 E-value=3.6e-06 Score=89.67 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=0.0
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEE
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 308 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l 308 (529)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.++...+ .+.|+|.|+++.+.+++
T Consensus 383 ~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~~~~-~v~l~v~R~g~~~~~~l 447 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPS-VLALNIQRGDSTIYLLM 447 (448)
T ss_dssp --------------------------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHcCCC-eEEEEEEECCEEEEEEe
Confidence 468899999999999999999999999999999876 677777765555 88999999988766554
No 200
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.74 E-value=4.8e-05 Score=85.75 Aligned_cols=74 Identities=27% Similarity=0.452 Sum_probs=60.1
Q ss_pred eeeeEEEeecCCCCCCCCcEEEEEecCCCcccCCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCe
Q 009668 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (529)
Q Consensus 224 ~glG~~~~~~~~~~~~~~~~~V~~V~~gsPA~~aG-L~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~ 302 (529)
.++|+.+.... ...+++|..|.+||||+++| |++||+|++|||+++.+.+..++...++. .+.++.|+|.|+..
T Consensus 318 ~~lG~~i~~~~----~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~-~~~~v~L~v~r~~~ 392 (721)
T 2xkx_A 318 TGLGFNIVGGE----DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKPE 392 (721)
T ss_pred CCccEEEeccC----CCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHh-cCCeEEEEEEeCch
Confidence 35777764221 03478999999999999999 99999999999999999878888888875 47789999987643
No 201
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.66 E-value=9.2e-06 Score=74.45 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=33.8
Q ss_pred EEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHH
Q 009668 244 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYD 280 (529)
Q Consensus 244 ~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~ 280 (529)
+|..|.++|||+++||++||+|++|||+++.++....
T Consensus 110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~ 146 (166)
T 1w9e_A 110 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQ 146 (166)
T ss_dssp EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHH
T ss_pred EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHH
Confidence 7999999999999999999999999999999885443
No 202
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.31 E-value=3.4e-05 Score=80.64 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeC
Q 009668 244 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (529)
Q Consensus 244 ~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~ 300 (529)
+|..|.+||||+++||++||+|++|||+++.+.+..++...++. .+..+.|++.+.
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~p~ 373 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHMKTMPA 373 (388)
T ss_dssp ---------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEec
Confidence 78899999999999999999999999999987766777777764 566777777543
No 203
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.02 E-value=0.0091 Score=64.66 Aligned_cols=66 Identities=8% Similarity=0.067 Sum_probs=53.8
Q ss_pred CcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEeeCCeeEEEEEeee
Q 009668 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 311 (529)
Q Consensus 241 ~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~~~~~~~l~g~~G~~v~ltv~r~g~~~~v~l~r~ 311 (529)
.+++|+.|.++++|..+|+++||+|++|||++|.+. .++.+++....+..+.|.+.. ++. +.|.++
T Consensus 415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~~~-~~~--ivL~~~ 480 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEFED-NYV--AVLERE 480 (539)
T ss_dssp CCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEETT-SCE--EEEEHH
T ss_pred eEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEECC-CEE--EEEEHH
Confidence 468899999999999999999999999999999986 788888887777777777653 333 444443
No 204
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=88.70 E-value=1.2 Score=42.60 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=65.1
Q ss_pred CCceEEEEecc-cccchhHHHHHHHHHHhhCCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecC
Q 009668 332 SPRIGYIKLTS-FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTD 410 (529)
Q Consensus 332 ~~~igYl~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 410 (529)
.++|+.|.+.. ++....+.+.+.|.++.+.+++.+||.+- -+||++..+..+...+.
T Consensus 7 ~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~in-spGG~v~~~~~i~~~i~--------------------- 64 (230)
T 3viv_A 7 KNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELD-TPGGRADAMMNIVQRIQ--------------------- 64 (230)
T ss_dssp CCEEEEEEEESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEE-BSCEEHHHHHHHHHHHH---------------------
T ss_pred CCeEEEEEEeCEECHHHHHHHHHHHHHHhcCCCCEEEEEEe-CCCcCHHHHHHHHHHHH---------------------
Confidence 45788888876 45556778888888887778999999873 78999888777666542
Q ss_pred CCCcccCCCCEEEEE---CCCCCCHHHHHHHHHh
Q 009668 411 GTDALAASEPLAVLV---NKGTASASEILAGALK 441 (529)
Q Consensus 411 ~~~~~~~~gpv~VL~---d~~TaSAaE~fa~~lk 441 (529)
..+.|++..+ ++..+|++-.++.+-.
T Consensus 65 -----~~~~PVia~v~p~~G~AasaG~~ia~a~d 93 (230)
T 3viv_A 65 -----QSKIPVIIYVYPPGASAASAGTYIALGSH 93 (230)
T ss_dssp -----TCSSCEEEEECSTTCEEETHHHHHHHTSS
T ss_pred -----hCCCCEEEEEecCCCEEhHHHHHHHHhcC
Confidence 1358999999 9999999999887764
No 205
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=80.11 E-value=2.7 Score=39.74 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=60.3
Q ss_pred CceEEEEecccccchhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCC
Q 009668 333 PRIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (529)
Q Consensus 333 ~~igYl~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (529)
++|.+|. ...+....+.+.+.|..+.+ .+.++++|.+ +-|||.+..+..+...+.
T Consensus 45 ~rii~l~-g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-nSPGG~v~ag~~I~~~i~---------------------- 100 (218)
T 1y7o_A 45 DRIIMLT-GPVEDNMANSVIAQLLFLDAQDSTKDIYLYV-NTPGGSVSAGLAIVDTMN---------------------- 100 (218)
T ss_dssp TTEEEEE-SCBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-EECCBCHHHHHHHHHHHH----------------------
T ss_pred CCEEEEe-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHH----------------------
Confidence 3565553 22344456778888877765 3589999999 678999988888777542
Q ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhc
Q 009668 412 TDALAASEPLAVLVNKGTASASEILAGALKD 442 (529)
Q Consensus 412 ~~~~~~~gpv~VL~d~~TaSAaE~fa~~lk~ 442 (529)
..+.||++.+++.++|++-.++.+-..
T Consensus 101 ----~~~~pV~t~v~G~AaS~G~~Ia~a~d~ 127 (218)
T 1y7o_A 101 ----FIKADVQTIVMGMAASMGTVIASSGAK 127 (218)
T ss_dssp ----HSSSCEEEEEEEEEETHHHHHHTTSCT
T ss_pred ----hcCCCEEEEEccEeHHHHHHHHHcCCc
Confidence 134689999999999999988877654
No 206
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=76.61 E-value=2.2 Score=39.42 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=59.8
Q ss_pred CceEEEEecccccchhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCC
Q 009668 333 PRIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (529)
Q Consensus 333 ~~igYl~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (529)
++|.+|.-. ..+...+.+.+.|..+.+ .+.++++|.+ +-|||++..+..+...+..
T Consensus 26 ~rii~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------- 82 (193)
T 1yg6_A 26 ERVIFLTGQ-VEDHMANLIVAQMLFLEAENPEKDIYLYI-NSPGGVITAGMSIYDTMQF--------------------- 82 (193)
T ss_dssp TTEEEEESS-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEcCE-EcHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHh---------------------
Confidence 355554321 233456777777877754 4589999999 7789999998888877532
Q ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhc
Q 009668 412 TDALAASEPLAVLVNKGTASASEILAGALKD 442 (529)
Q Consensus 412 ~~~~~~~gpv~VL~d~~TaSAaE~fa~~lk~ 442 (529)
.+.|+++.+++.++|+|-.++.+-..
T Consensus 83 -----~~~pV~~~v~g~AaS~g~~Ia~ag~~ 108 (193)
T 1yg6_A 83 -----IKPDVSTICMGQAASMGAFLLTAGAK 108 (193)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSCT
T ss_pred -----cCCCEEEEEeeeHHHHHHHHHHCCCc
Confidence 23689999999999999998887543
No 207
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=75.75 E-value=2.6 Score=39.53 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCCCCcccCCCCEEE
Q 009668 345 QNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAV 423 (529)
Q Consensus 345 ~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~V 423 (529)
....+.+.+.|..+.+ .+.++++|.+ +-|||+...+..+...+.. .+.||++
T Consensus 38 ~~~a~~i~~~L~~~~~~~~~k~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------------~~~pV~~ 90 (208)
T 2cby_A 38 DEIANRLCAQILLLAAEDASKDISLYI-NSPGGSISAGMAIYDTMVL--------------------------APCDIAT 90 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------CSSCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEE
Confidence 3456778888877764 4689999999 6788999888888776532 2468999
Q ss_pred EECCCCCCHHHHHHHHHhc
Q 009668 424 LVNKGTASASEILAGALKD 442 (529)
Q Consensus 424 L~d~~TaSAaE~fa~~lk~ 442 (529)
.+++.++|++-.++.+-..
T Consensus 91 ~v~g~AaS~g~~Ia~agd~ 109 (208)
T 2cby_A 91 YAMGMAASMGEFLLAAGTK 109 (208)
T ss_dssp EEEEEEETHHHHHHHTSCT
T ss_pred EECcEeHHHHHHHHhCCCc
Confidence 9999999999999887653
No 208
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=71.03 E-value=3.4 Score=39.04 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=54.0
Q ss_pred cchhHHHHHHHHHHhhCCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCCCCcccCCCCEEEE
Q 009668 345 QNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVL 424 (529)
Q Consensus 345 ~~~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~VL 424 (529)
....+.+.+.|..+...+.+.|+|.+ +-|||.+..+..|...+.. .+.|+++.
T Consensus 50 ~~~a~~i~~~L~~l~~~~~k~I~l~I-NSPGGsv~a~~~I~~~i~~--------------------------~~~pV~t~ 102 (215)
T 2f6i_A 50 KKTADELISQLLYLDNINHNDIKIYI-NSPGGSINEGLAILDIFNY--------------------------IKSDIQTI 102 (215)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------SSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEEE
Confidence 33566777777777654448999988 7789999998888887532 23589999
Q ss_pred ECCCCCCHHHHHHHHHhc
Q 009668 425 VNKGTASASEILAGALKD 442 (529)
Q Consensus 425 ~d~~TaSAaE~fa~~lk~ 442 (529)
+.+.++|++-+++.+-..
T Consensus 103 v~g~AAS~g~~Ia~agd~ 120 (215)
T 2f6i_A 103 SFGLVASMASVILASGKK 120 (215)
T ss_dssp EEEEECHHHHHHHHTSCT
T ss_pred EeeEhHhHHHHHHHcCCc
Confidence 999999999988887644
No 209
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=66.77 E-value=5.1 Score=37.44 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=53.8
Q ss_pred ccchhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCCCCcccCCCCEE
Q 009668 344 NQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLA 422 (529)
Q Consensus 344 ~~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~ 422 (529)
.+...+.+.+.|..+.+ .+.+.++|.+ +-|||++..+..+...+.. .+.||+
T Consensus 37 ~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~~~~~I~~~i~~--------------------------~~~~V~ 89 (203)
T 3qwd_A 37 DDNVANSIVSQLLFLQAQDSEKDIYLYI-NSPGGSVTAGFAIYDTIQH--------------------------IKPDVQ 89 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------SSSCEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHH--------------------------hcCCcE
Confidence 33456777777777765 3588899988 5789999988888776532 246899
Q ss_pred EEECCCCCCHHHHHHHHHh
Q 009668 423 VLVNKGTASASEILAGALK 441 (529)
Q Consensus 423 VL~d~~TaSAaE~fa~~lk 441 (529)
+.+.+.++|+|-.++.+-.
T Consensus 90 t~~~G~AaSag~~i~~ag~ 108 (203)
T 3qwd_A 90 TICIGMAASMGSFLLAAGA 108 (203)
T ss_dssp EEEEEEEETHHHHHHHTSC
T ss_pred EEEeeeehhHHHHHHHcCC
Confidence 9999999999988886543
No 210
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=62.92 E-value=6.7 Score=36.56 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=57.7
Q ss_pred ceEEEEecccccchhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCCC
Q 009668 334 RIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 412 (529)
Q Consensus 334 ~igYl~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 412 (529)
+|-||.-+ ..+...+.+.+.|..+.+ .+.+.++|-+ +-|||++..+..+...+..
T Consensus 31 riI~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~---------------------- 86 (201)
T 3p2l_A 31 RIVFLNGE-VNDHSANLVIAQLLFLESEDPDKDIYFYI-NSPGGMVTAGMGVYDTMQF---------------------- 86 (201)
T ss_dssp TEEEEESC-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH----------------------
T ss_pred CEEEEcCE-ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHH----------------------
Confidence 55454322 233456777777777765 4588999988 7789999998888776532
Q ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHh
Q 009668 413 DALAASEPLAVLVNKGTASASEILAGALK 441 (529)
Q Consensus 413 ~~~~~~gpv~VL~d~~TaSAaE~fa~~lk 441 (529)
.+.|+++.+.+.++|+|-.++.+-.
T Consensus 87 ----~~~~v~t~~~G~AaS~g~~i~~ag~ 111 (201)
T 3p2l_A 87 ----IKPDVSTICIGLAASMGSLLLAGGA 111 (201)
T ss_dssp ----SSSCEEEEEEEEEETHHHHHHHTSS
T ss_pred ----hCCCeEEEEcCEehhHHHHHHHcCc
Confidence 2368999999999999998887644
No 211
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=54.55 E-value=14 Score=36.29 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=53.0
Q ss_pred chhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCCCCcccCCCCEEEE
Q 009668 346 NASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVL 424 (529)
Q Consensus 346 ~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpv~VL 424 (529)
...+.+.+.|..+.. .+.+.|+|.+ +-|||++..+..|...+.. .+.||++.
T Consensus 94 ~~a~~iiaqL~~l~~ed~~k~I~L~I-NSPGGsV~ag~aIyd~I~~--------------------------~k~pV~t~ 146 (277)
T 1tg6_A 94 SVASLVIAQLLFLQSESNKKPIHMYI-NSPGGVVTAGLAIYDTMQY--------------------------ILNPICTW 146 (277)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------SCSCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEEE
Confidence 355667777776654 4689999988 6789999998888877532 23689999
Q ss_pred ECCCCCCHHHHHHHHHhc
Q 009668 425 VNKGTASASEILAGALKD 442 (529)
Q Consensus 425 ~d~~TaSAaE~fa~~lk~ 442 (529)
+.+..+|++-+++.+-..
T Consensus 147 v~G~AASaG~~Ia~Agd~ 164 (277)
T 1tg6_A 147 CVGQAASMGSLLLAAGTP 164 (277)
T ss_dssp EEEEEETHHHHHHHTSCT
T ss_pred EccEeHHHHHHHHHCCCc
Confidence 999999999988876543
No 212
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=54.36 E-value=14 Score=35.03 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCceeeeecCCCCccc-CCCCEEEEE
Q 009668 348 SGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALA-ASEPLAVLV 425 (529)
Q Consensus 348 ~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gpv~VL~ 425 (529)
.+++.++++++.+ ..++++||+.-. +||++..+..+...+.. + .. ..+||+..+
T Consensus 31 ~~~l~~~l~~a~~d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l~~----------------~-------~~~~~kPVia~v 86 (240)
T 3rst_A 31 HRTFLKNLERAKDDKTVKGIVLKVNS-PGGGVYESAEIHKKLEE----------------I-------KKETKKPIYVSM 86 (240)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEE-CCBCHHHHHHHHHHHHH----------------H-------HHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEecC-CCCCHHHHHHHHHHHHH----------------H-------HHhCCCeEEEEE
Confidence 4678888888775 478999998864 78887766555443321 0 01 358999999
Q ss_pred CCCCCCHHHHHHHHH
Q 009668 426 NKGTASASEILAGAL 440 (529)
Q Consensus 426 d~~TaSAaE~fa~~l 440 (529)
++.++|++=.+|.+.
T Consensus 87 ~g~a~~gG~~lA~a~ 101 (240)
T 3rst_A 87 GSMAASGGYYISTAA 101 (240)
T ss_dssp EEEEETHHHHHHTTS
T ss_pred CCeehHhHHHHHHhC
Confidence 999999987776653
No 213
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=36.67 E-value=55 Score=30.80 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=34.7
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCEEEEECCEecCCCCH---HHHHHHhcCCCCCcEEEEE
Q 009668 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGI---YDAAERLQGPEGSPVELTV 297 (529)
Q Consensus 240 ~~~~~V~~V~~gsPA~~aGL~~GD~IlaInG~~v~~~~~---~~~~~~l~g~~G~~v~ltv 297 (529)
+++++|.. +++.|++.|..++++||.++.+..+ .++...+.|+....+-+..
T Consensus 44 ~~~~~v~~------~~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~ 98 (219)
T 2j3t_D 44 DERVLVAF------GQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRF 98 (219)
T ss_dssp SSSEEEEE------CCCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEE
T ss_pred cceeEEee------cccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEe
Confidence 45666655 3678999999999999999986422 2344555555555554443
No 214
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=35.35 E-value=17 Score=39.52 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=56.4
Q ss_pred CceEEEEeccc--------ccchhHHHHHHHHHHhhC-CCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCc
Q 009668 333 PRIGYIKLTSF--------NQNASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGV 403 (529)
Q Consensus 333 ~~igYl~i~sF--------~~~~~~~l~~~l~~l~~~-~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~ 403 (529)
++|+.|.++.= +....+++.++|+++.+. +++++||..-+ +||++..+..+...+..
T Consensus 301 ~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-pGG~~~~~~~i~~~i~~------------- 366 (593)
T 3bf0_A 301 DSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-PGGSVTASEVIRAELAA------------- 366 (593)
T ss_dssp CEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-EEECHHHHHHHHHHHHH-------------
T ss_pred CCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-CCCCHHHHHHHHHHHHH-------------
Confidence 46777777642 112357888999888764 78999987754 68887765443332210
Q ss_pred eeeeecCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Q 009668 404 RDIYDTDGTDALAASEPLAVLVNKGTASASEILAGAL 440 (529)
Q Consensus 404 ~~~~~~~~~~~~~~~gpv~VL~d~~TaSAaE~fa~~l 440 (529)
+ ...++||++.+++.++|++=.++.+.
T Consensus 367 ---l-------~~~~kPVia~v~g~AasgG~~iA~aa 393 (593)
T 3bf0_A 367 ---A-------RAAGKPVVVSMGGMAASGGYWISTPA 393 (593)
T ss_dssp ---H-------HHTTCCEEEEEEEEEETHHHHTTTTC
T ss_pred ---H-------HhCCCCEEEEECCChHHHHHHHHHhC
Confidence 0 12358999999999999997777655
No 215
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=33.43 E-value=64 Score=26.88 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=41.5
Q ss_pred CceEEEEecc-cccchhHHHHHHHHHHhhC---CCCeEEEEcCCCCCCC---hHHHHHHHHhhcCCCcEEEEE
Q 009668 333 PRIGYIKLTS-FNQNASGAVREAIDTLRSN---SVNAFVLDLRDNSGGL---FPEGIEIAKIWLDKGVIVYIC 398 (529)
Q Consensus 333 ~~igYl~i~s-F~~~~~~~l~~~l~~l~~~---~~~~LIIDLR~N~GG~---~~~~~~l~~~f~~~~~~~~~~ 398 (529)
+++..+++.. +.-...+.+++.+.++... +.+.||||+++=.-=+ +.....+...+-..+..+...
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~ 86 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMA 86 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4777888875 3344677888888876544 5789999999754211 122334555555666554443
No 216
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=30.51 E-value=1e+02 Score=29.96 Aligned_cols=59 Identities=8% Similarity=0.057 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHh--ccCCCCCHHHHHHHHHHHHHh-cCCCCcccc
Q 009668 145 NRLFLEAWRTIDRAYVDKTFNGQSWFRYRENAL--RNEPMNTREETYMAIRKMLAT-LDDPFTRFL 207 (529)
Q Consensus 145 ~~~fd~v~~~l~~~Y~~~~~~g~~w~~~~~~~~--~~~~~~~~~~f~~~i~~~l~~-L~Dpht~~l 207 (529)
...++.+++.|.++|++++ ++ .++.+.+. +.....+.+++...+..++.. ++|+|..+.
T Consensus 5 ~~vv~~~~~~l~~~Y~f~~-~~---~a~~~~l~~~~~~~i~~~~~La~~Lt~~lq~~~~D~hl~v~ 66 (302)
T 1j7x_A 5 THVLHQLCDILANNYAFSE-RI---PTLLQHLPNLDYSTVISEEDIAAKLNYELQSLTEDPRLVLK 66 (302)
T ss_dssp HHHHHHHHHHHHHHCSCGG-GH---HHHHHHGGGSCCSSCCSHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCHH-HH---HHHHHHHhcCCcccCCCHHHHHHHHHhhhhhccCCCcEEEE
Confidence 4578999999999999875 22 25555542 234567778899999999988 499998653
No 217
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=30.27 E-value=75 Score=26.99 Aligned_cols=49 Identities=6% Similarity=0.102 Sum_probs=36.0
Q ss_pred CCceEEEEecc---cccchhHHHHHHHHHHhhCCCCeEEEEcCCCCCCChHHH
Q 009668 332 SPRIGYIKLTS---FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEG 381 (529)
Q Consensus 332 ~~~igYl~i~s---F~~~~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~ 381 (529)
+++|.|+++.. ++....+.+...+.++...+.-.+++|+|.. +.....+
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~-~~~s~~A 69 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATT-ADVSRGA 69 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSS-THHHHHH
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEcccc-cCCCHHH
Confidence 47999999987 5555666677777777776778999999998 4444443
No 218
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=24.68 E-value=2.8e+02 Score=26.18 Aligned_cols=98 Identities=18% Similarity=0.092 Sum_probs=58.1
Q ss_pred CceEEEEecc------cccchhHHHHHHHHHHhh-CCCCeEEEEcC---CCCCCChHHHHHHHHhhcCCCcEEEEEcCCC
Q 009668 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLR---DNSGGLFPEGIEIAKIWLDKGVIVYICDSRG 402 (529)
Q Consensus 333 ~~igYl~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIIDLR---~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~ 402 (529)
++|++|+++. ++.....++.++++.+.+ ..++.+||-=. .+.|+++...... . ..+.. .....
T Consensus 17 ~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~-~~~~~---~~~~~ 89 (265)
T 3swx_A 17 GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAE---I-QGGAS---LTPEG 89 (265)
T ss_dssp TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHH---H-C--CC---CCCTT
T ss_pred CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhc---c-cchhH---HHHHH
Confidence 4777787754 334456788888888875 46899998422 3458887653221 1 11100 00000
Q ss_pred ceeeeecCCCCc-ccCCCCEEEEECCCCCCHHHHHHHHHh
Q 009668 403 VRDIYDTDGTDA-LAASEPLAVLVNKGTASASEILAGALK 441 (529)
Q Consensus 403 ~~~~~~~~~~~~-~~~~gpv~VL~d~~TaSAaE~fa~~lk 441 (529)
..+.+. .- ...++|++..+|+.+..++-.++.+.-
T Consensus 90 ~~~~~~----~l~~~~~kPvIAav~G~a~GgG~~lalacD 125 (265)
T 3swx_A 90 GINPWQ----VDGRQLSKPLLVAVHGKVLTLGIELALAAD 125 (265)
T ss_dssp CCCTTC----CSSCCCSSCEEEEECSEEETHHHHHHHHSS
T ss_pred HHHHHH----HHHHhCCCCEEEEEcCeeehHHHHHHHHCC
Confidence 011111 11 256799999999999999987777643
No 219
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=24.37 E-value=68 Score=25.64 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=29.2
Q ss_pred ceEEEEecc-cccchhHHHHHHHHHHhhCC-CCeEEEEcCCCCCCC
Q 009668 334 RIGYIKLTS-FNQNASGAVREAIDTLRSNS-VNAFVLDLRDNSGGL 377 (529)
Q Consensus 334 ~igYl~i~s-F~~~~~~~l~~~l~~l~~~~-~~~LIIDLR~N~GG~ 377 (529)
++..+++.. +.......+++.+.++...+ .+.+|||+++=.-=+
T Consensus 12 ~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iD 57 (116)
T 1th8_B 12 DVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMD 57 (116)
T ss_dssp TEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEEEEC
T ss_pred CEEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEc
Confidence 566677654 33345567778777665544 789999998765433
No 220
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=24.14 E-value=99 Score=29.69 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=51.9
Q ss_pred CceEEEEecc------cccchhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcee
Q 009668 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRD 405 (529)
Q Consensus 333 ~~igYl~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~~~~ 405 (529)
++|++|.++. ++.....++.++++++.+ ..++.+|| ++++ +.+..+..+-.+ ......-..........
T Consensus 28 ~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g-~~F~aG~Dl~~~-~~~~~~~~~~~~~~~~~ 103 (278)
T 4f47_A 28 GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL--TGAG-GYFCAGMDLKAA-TKKPPGDSFKDGSYDPS 103 (278)
T ss_dssp TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE--EEST-TCCC-----------------------CTT
T ss_pred CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCC-CcccCCcChHhh-hccchhhhHHHHHHHHH
Confidence 4788888865 334456788888888875 46899998 4443 233333322221 11000000000000001
Q ss_pred eeecCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Q 009668 406 IYDTDGTDALAASEPLAVLVNKGTASASEILAGAL 440 (529)
Q Consensus 406 ~~~~~~~~~~~~~gpv~VL~d~~TaSAaE~fa~~l 440 (529)
.+..- ......++|++..+|+.+..++-.++.+.
T Consensus 104 ~~~~l-~~~~~~~kPvIAav~G~a~GgG~~lalac 137 (278)
T 4f47_A 104 RIDAL-LKGRRLKKPLIAAVEGPAIAGGTEILQGT 137 (278)
T ss_dssp CBTTT-TBSCCCSSCEEEEECSEEETHHHHHHTTC
T ss_pred HHHHH-HHhcCCCCCEEEEECCEEehHHHHHHHhC
Confidence 11110 00014689999999999999988777654
No 221
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=23.67 E-value=2e+02 Score=23.62 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=33.4
Q ss_pred CceEEEEecc-cccchhHHHHHHHHH-HhhCCCCeEEEEcCCCCCCChH
Q 009668 333 PRIGYIKLTS-FNQNASGAVREAIDT-LRSNSVNAFVLDLRDNSGGLFP 379 (529)
Q Consensus 333 ~~igYl~i~s-F~~~~~~~l~~~l~~-l~~~~~~~LIIDLR~N~GG~~~ 379 (529)
+++..+++.. +.......+++.+.+ +...+.+.+|||+++=.-=+..
T Consensus 20 ~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~~~~~vvlDls~V~~iDSs 68 (125)
T 2ka5_A 20 DDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSF 68 (125)
T ss_dssp SSCEEECCCSCCSGGGTHHHHHHHHHHTTTTTCCEEEEECTTCSCCCHH
T ss_pred CCEEEEEEecEEecccHHHHHHHHHHHHhhCCCCEEEEECCCCCEEcHH
Confidence 4667777764 344456788888887 5555788999999987755433
No 222
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=23.27 E-value=70 Score=26.29 Aligned_cols=46 Identities=4% Similarity=-0.042 Sum_probs=32.2
Q ss_pred CCceEEEEecc-cccchhHHHHHHHHHHhhCCCCeEEEEcCCCCCCCh
Q 009668 332 SPRIGYIKLTS-FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLF 378 (529)
Q Consensus 332 ~~~igYl~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~ 378 (529)
.+++..+++.. +.-...+.+.+.+.++. .+.+.+|||+++=+.=+.
T Consensus 15 ~~~v~v~~l~G~L~f~~a~~l~~~l~~~~-~~~~~vilDl~~v~~iDs 61 (118)
T 3ny7_A 15 PDDVLVLRVIGPLFFAAAEGLFTDLESRL-EGKRIVILKWDAVPVLDA 61 (118)
T ss_dssp CTTEEEEEEESCBCHHHHHHHHHHHHTTC-TTCSEEEEEEEECCCBCH
T ss_pred CCCEEEEEEeceeEehhHHHHHHHHHHhc-CCCcEEEEEcCCCCeecH
Confidence 46888888876 33345667777776543 468999999998775443
No 223
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=23.16 E-value=87 Score=24.64 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=30.0
Q ss_pred CceEEEEecc-cccchhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCChH
Q 009668 333 PRIGYIKLTS-FNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFP 379 (529)
Q Consensus 333 ~~igYl~i~s-F~~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~ 379 (529)
+++..+++.. +.......+++.+.++.. ...+.+|||+++=.-=+..
T Consensus 12 ~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDss 60 (110)
T 1sbo_A 12 DDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSA 60 (110)
T ss_dssp SSEEEEEEESCBSTTTTTHHHHHHHTHHHHCSCSEEEEECTTCCCBCHH
T ss_pred CCEEEEEEeeEEccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEccH
Confidence 4666777764 333455677777766543 3347899999887654443
No 224
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=21.87 E-value=3.2e+02 Score=25.64 Aligned_cols=97 Identities=21% Similarity=0.098 Sum_probs=56.9
Q ss_pred CceEEEEecc------cccchhHHHHHHHHHHhh-CCCCeEEEEcC---CCCCCChHHHHHHHHhhcCCCcEEEEEcCCC
Q 009668 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLR---DNSGGLFPEGIEIAKIWLDKGVIVYICDSRG 402 (529)
Q Consensus 333 ~~igYl~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIIDLR---~N~GG~~~~~~~l~~~f~~~~~~~~~~~~~~ 402 (529)
++|++|+++. ++.....++.++++++.+ ..++.+||-=. .+.|+++... ... .+.+..-+ ...
T Consensus 20 ~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~---~~~-~~~~~~~~---~~~ 92 (258)
T 3lao_A 20 GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMEL---APK-LAASGFRY---PDG 92 (258)
T ss_dssp TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHH---GGG-CBTTBCCC---CTT
T ss_pred CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHH---hhc-cchhhHHH---HHH
Confidence 4788888764 333456788888888875 46899998432 2347776542 111 11111000 000
Q ss_pred ceeeeecCCCCc-ccCCCCEEEEECCCCCCHHHHHHHHH
Q 009668 403 VRDIYDTDGTDA-LAASEPLAVLVNKGTASASEILAGAL 440 (529)
Q Consensus 403 ~~~~~~~~~~~~-~~~~gpv~VL~d~~TaSAaE~fa~~l 440 (529)
..+.+. .- ...++|++..+|+.+..++-.++.+.
T Consensus 93 ~~~~~~----~l~~~~~kPvIAav~G~a~GgG~~lalac 127 (258)
T 3lao_A 93 GVDPWG----VVQPRRSKPLVVAVQGTCWTAGIELMLNA 127 (258)
T ss_dssp CCCTTS----CSSSCCCSCEEEEECSEEETHHHHHHHTS
T ss_pred HHHHHH----HHHHhCCCCEEEEECCEeEhHHHHHHHhC
Confidence 001111 11 35689999999999999998887764
No 225
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=20.71 E-value=99 Score=25.27 Aligned_cols=45 Identities=7% Similarity=0.033 Sum_probs=31.7
Q ss_pred CceEEEEeccc----ccchhHHHHHHHHHHh-hCCCCeEEEEcCCCCCCC
Q 009668 333 PRIGYIKLTSF----NQNASGAVREAIDTLR-SNSVNAFVLDLRDNSGGL 377 (529)
Q Consensus 333 ~~igYl~i~sF----~~~~~~~l~~~l~~l~-~~~~~~LIIDLR~N~GG~ 377 (529)
+++..+++..- .......+++.+.+.- +.+.+.+|||+++=.-=+
T Consensus 13 ~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~~~~~~vvlDls~v~~iD 62 (121)
T 3t6o_A 13 AQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVEFFG 62 (121)
T ss_dssp TTEEEEECCGGGSEECHHHHHHHHHHHHHTTCCSSSCEEEEECTTCCEEC
T ss_pred CCEEEEEEccccccCchhhHHHHHHHHHHHHhhcCCCeEEEECCCCCEEc
Confidence 47788888762 3345678888875543 457899999999976433
Done!