Query 009669
Match_columns 529
No_of_seqs 384 out of 2522
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 15:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0136 Acyl-CoA oxidase [Lipi 100.0 6.2E-99 1E-103 781.3 36.1 514 1-525 9-528 (670)
2 PLN02443 acyl-coenzyme A oxida 100.0 1.8E-92 3.8E-97 775.4 52.1 519 1-523 1-519 (664)
3 PTZ00460 acyl-CoA dehydrogenas 100.0 2.2E-88 4.9E-93 742.0 49.6 500 5-522 2-506 (646)
4 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 7.7E-87 1.7E-91 675.6 35.5 502 5-518 19-541 (661)
5 PLN02312 acyl-CoA oxidase 100.0 4E-84 8.7E-89 711.1 48.2 492 11-522 46-568 (680)
6 cd01150 AXO Peroxisomal acyl-C 100.0 1.2E-83 2.7E-88 705.4 49.0 484 6-524 2-496 (610)
7 PLN02636 acyl-coenzyme A oxida 100.0 1.3E-82 2.7E-87 700.9 47.9 498 12-524 48-573 (686)
8 KOG0141 Isovaleryl-CoA dehydro 100.0 2.6E-62 5.7E-67 465.7 22.4 362 24-441 38-420 (421)
9 KOG0139 Short-chain acyl-CoA d 100.0 7.3E-62 1.6E-66 470.3 18.6 341 29-428 39-398 (398)
10 KOG0140 Medium-chain acyl-CoA 100.0 3.1E-60 6.8E-65 451.4 21.7 360 25-443 26-407 (408)
11 TIGR03203 pimD_small pimeloyl- 100.0 1.9E-54 4.2E-59 452.2 31.3 353 27-436 4-374 (378)
12 cd01161 VLCAD Very long chain 100.0 3.7E-51 8E-56 432.3 32.3 367 17-441 19-407 (409)
13 cd01162 IBD Isobutyryl-CoA deh 100.0 9E-51 2E-55 424.7 33.8 354 28-440 2-374 (375)
14 cd01151 GCD Glutaryl-CoA dehyd 100.0 1E-50 2.2E-55 425.9 33.1 352 27-440 13-382 (386)
15 cd01160 LCAD Long chain acyl-C 100.0 1.1E-50 2.4E-55 423.6 32.2 352 29-438 1-371 (372)
16 PRK03354 crotonobetainyl-CoA d 100.0 1.8E-50 4E-55 423.0 32.6 358 27-442 5-379 (380)
17 cd01157 MCAD Medium chain acyl 100.0 1.7E-50 3.8E-55 423.0 32.2 355 28-440 2-377 (378)
18 PLN02526 acyl-coenzyme A oxida 100.0 3.3E-50 7.1E-55 425.1 32.3 365 15-441 14-399 (412)
19 PRK12341 putative acyl-CoA deh 100.0 4.1E-50 8.8E-55 420.6 32.3 356 27-441 5-379 (381)
20 cd01156 IVD Isovaleryl-CoA deh 100.0 7.6E-50 1.7E-54 417.8 32.2 355 28-440 3-376 (376)
21 PLN02519 isovaleryl-CoA dehydr 100.0 9.4E-50 2E-54 420.8 32.9 359 27-441 26-403 (404)
22 PTZ00461 isovaleryl-CoA dehydr 100.0 6.9E-50 1.5E-54 422.6 31.9 358 21-441 32-408 (410)
23 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 1.6E-49 3.4E-54 414.9 31.6 350 28-437 2-370 (372)
24 PRK09463 fadE acyl-CoA dehydro 100.0 2.4E-49 5.2E-54 437.6 32.1 366 13-434 63-466 (777)
25 TIGR03204 pimC_large pimeloyl- 100.0 3E-49 6.4E-54 415.6 30.1 358 27-439 4-393 (395)
26 PRK13026 acyl-CoA dehydrogenas 100.0 1.2E-48 2.5E-53 430.5 31.2 333 68-448 109-488 (774)
27 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 6.7E-48 1.4E-52 405.6 34.3 360 31-440 3-394 (394)
28 cd01158 SCAD_SBCAD Short chain 100.0 8.5E-48 1.8E-52 401.9 31.7 354 29-440 1-373 (373)
29 PTZ00456 acyl-CoA dehydrogenas 100.0 9.2E-48 2E-52 420.6 30.8 340 71-439 103-479 (622)
30 KOG0138 Glutaryl-CoA dehydroge 100.0 3.7E-48 7.9E-53 367.8 22.2 353 28-440 56-426 (432)
31 COG1960 CaiA Acyl-CoA dehydrog 100.0 2.8E-47 6E-52 400.9 30.3 359 29-442 7-390 (393)
32 PLN02876 acyl-CoA dehydrogenas 100.0 3E-46 6.5E-51 425.0 33.2 289 106-441 525-819 (822)
33 KOG0137 Very-long-chain acyl-C 100.0 4.7E-47 1E-51 389.6 22.6 324 70-438 112-458 (634)
34 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.7E-45 3.6E-50 377.5 32.0 326 29-436 1-327 (327)
35 cd01154 AidB Proteins involved 100.0 2.9E-45 6.2E-50 387.8 32.4 302 97-439 111-417 (418)
36 cd01152 ACAD_fadE6_17_26 Putat 100.0 1.2E-45 2.7E-50 386.6 28.2 352 29-439 1-379 (380)
37 cd01153 ACAD_fadE5 Putative ac 100.0 1.4E-44 3E-49 381.8 31.1 337 70-436 39-404 (407)
38 PRK11561 isovaleryl CoA dehydr 100.0 8E-45 1.7E-49 389.3 29.5 290 105-440 139-441 (538)
39 cd01163 DszC Dibenzothiophene 100.0 1.7E-41 3.7E-46 355.0 28.0 328 70-439 25-372 (377)
40 PTZ00457 acyl-CoA dehydrogenas 100.0 8.5E-37 1.8E-41 325.4 28.1 280 70-431 53-362 (520)
41 cd01159 NcnH Naphthocyclinone 100.0 6.8E-37 1.5E-41 319.4 25.7 327 70-440 25-370 (370)
42 KOG1469 Predicted acyl-CoA deh 100.0 2.7E-35 5.8E-40 276.4 17.0 288 109-442 91-384 (392)
43 TIGR02309 HpaB-1 4-hydroxyphen 99.9 1.8E-20 3.9E-25 199.6 22.7 248 111-406 119-391 (477)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 2.3E-20 4.9E-25 169.2 18.7 145 276-439 6-150 (150)
45 PF14749 Acyl-CoA_ox_N: Acyl-c 99.6 2.7E-15 5.9E-20 132.1 11.7 116 17-132 1-125 (125)
46 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 2.4E-13 5.2E-18 100.2 5.3 51 134-192 1-51 (52)
47 PF08028 Acyl-CoA_dh_2: Acyl-C 99.3 1.9E-11 4.2E-16 108.9 12.9 130 286-426 1-132 (134)
48 PF02771 Acyl-CoA_dh_N: Acyl-C 98.4 1.9E-07 4.1E-12 80.2 3.4 94 28-130 1-113 (113)
49 TIGR02310 HpaB-2 4-hydroxyphen 98.4 2.8E-05 6E-10 83.6 20.5 277 118-439 137-445 (519)
50 COG2368 Aromatic ring hydroxyl 98.4 3.2E-05 6.9E-10 80.6 19.3 251 113-408 125-401 (493)
51 PF11794 HpaB_N: 4-hydroxyphen 97.0 0.0048 1E-07 60.9 10.5 120 118-255 124-263 (264)
52 PTZ00457 acyl-CoA dehydrogenas 87.0 6.3 0.00014 43.1 11.7 86 300-406 418-503 (520)
53 PF03241 HpaB: 4-hydroxyphenyl 86.3 14 0.00031 35.2 12.4 109 324-439 44-160 (205)
54 KOG0137 Very-long-chain acyl-C 73.9 39 0.00085 37.0 11.6 68 323-401 536-603 (634)
55 COG1902 NemA NADH:flavin oxido 28.2 34 0.00073 35.7 1.7 61 384-449 154-216 (363)
56 PRK09463 fadE acyl-CoA dehydro 25.4 4.6E+02 0.01 30.4 10.3 100 323-441 562-663 (777)
57 PF12584 TRAPPC10: Trafficking 20.1 2.4E+02 0.0051 25.2 5.5 30 196-227 86-115 (147)
No 1
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=6.2e-99 Score=781.28 Aligned_cols=514 Identities=53% Similarity=0.837 Sum_probs=480.3
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCC-CCcccCCCHHHHHHHHHHHHHHHHHHHHHc
Q 009669 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFR-KDNRAMLSRKELFKNTLRKAAYAWKRIIEL 79 (529)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~ 79 (529)
+|| ||++||.+++||+++|+.+|+|++|...+|+++++.+.++|.|. ..+...++++|.++...++...+++.+.++
T Consensus 9 ~Np--dl~~ER~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~~~~~~sr~E~~~~~~Rk~~~~~~~~~el 86 (670)
T KOG0136|consen 9 DNP--DLQKERAKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKKPLPFMSREERYENTVRKLARLTKKMREL 86 (670)
T ss_pred CCh--HHHHHHhhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355 99999999999999999999999999999999999999999998 456689999999999999999999888888
Q ss_pred CCCHHH-----HhHhhhhcCCcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEE
Q 009669 80 RLSEEE-----ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTAT 154 (529)
Q Consensus 80 g~~~~~-----gg~~~~~~~~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt 154 (529)
.+.... +.....+...+.|+.+|.+||.++|...||+||.++||++..+.+|+||||+||+|||||+++++||||
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~At 166 (670)
T KOG0136|consen 87 QDNTDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTAT 166 (670)
T ss_pred HhcCcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeee
Confidence 774221 222233344578999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCccccccc
Q 009669 155 FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 234 (529)
Q Consensus 155 ~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~ 234 (529)
||+.+++||||||+.++.|||+|+||+.|+|++|+|+++++|+++|+|.|+||+||++||.++|||+|+|+++||| +
T Consensus 167 yD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg---~ 243 (670)
T KOG0136|consen 167 YDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMG---F 243 (670)
T ss_pred ecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCcccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecC
Q 009669 235 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 314 (529)
Q Consensus 235 ~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg 314 (529)
+|.|||++.|||||||++|||+++++|.++|.|+.++.++ +.|++|...|..++..+.-.+.+|++||+||+.+|+||.
T Consensus 244 ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~ 322 (670)
T KOG0136|consen 244 NGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSE 322 (670)
T ss_pred cCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999988775 899999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHH
Q 009669 315 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 394 (529)
Q Consensus 315 ~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~ 394 (529)
..++.+|++|+|||++|+||+|.++..||+++++.++.++|.+....+..++.+.++++|++++++|+.+|+.+.+.+++
T Consensus 323 i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~ 402 (670)
T KOG0136|consen 323 IRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQ 402 (670)
T ss_pred CCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCccccccccccchHHhhhcCCCccc
Q 009669 395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 474 (529)
Q Consensus 395 ~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 474 (529)
||+.||||||++.++++.+|..+.+.|||||+|.||+.|+||+|+|.|.+..+|+...++..|+.......+ .....
T Consensus 403 ~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~~~~---~~~~~ 479 (670)
T KOG0136|consen 403 CRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASALKPQ---LISGA 479 (670)
T ss_pred HHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhcccCcc---ccccc
Confidence 999999999999999999999999999999999999999999999999999999988889999976644221 12234
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHhhccceeeEE
Q 009669 475 EDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGNLFILDIGSLKLFR 525 (529)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (529)
.++.+ + ++.+|+++|.+++..+++++++.+..+.+-...||+.+++|+|
T Consensus 480 ~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~ 528 (670)
T KOG0136|consen 480 GDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTR 528 (670)
T ss_pred cchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 56666 5 9999999999999999999999999999999999999999865
No 2
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.8e-92 Score=775.44 Aligned_cols=519 Identities=86% Similarity=1.354 Sum_probs=465.1
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 009669 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (529)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g 80 (529)
|.|++||++||++++||+++|+.+|+|+++..++|+++++++.++|+|...+..+++|++.++....+..++.+.+.++|
T Consensus 1 ~~~~~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~~ 80 (664)
T PLN02443 1 MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKELFKNTLRKAAHAWKRIIELR 80 (664)
T ss_pred CCchHHHHHHHhcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 78899999999999999999999999999999999999999999999998777789999999999999999999899999
Q ss_pred CCHHHHhHhhhhcCCcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCC
Q 009669 81 LSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (529)
Q Consensus 81 ~~~~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~ 160 (529)
|............+.+.++.+|+.+|+++|..+||+||+++|||++.+|++++|||+|||+||||+++++||||+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~ 160 (664)
T PLN02443 81 LTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD 160 (664)
T ss_pred CCchhHHHHHHhcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCC
Confidence 97654444444556666788999999999999999999999999999999999999999999999999999999999899
Q ss_pred eEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcc
Q 009669 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (529)
Q Consensus 161 ~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~ 240 (529)
+||||||+++|+||||+|++..||+++|+||++++++++|+|+|+||+||+++|.+.|||+++++++|+|.+++++.|||
T Consensus 161 efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng 240 (664)
T PLN02443 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG 240 (664)
T ss_pred EEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcce
Confidence 99999999999999999966899999999999888888999999999999999999999999999999994334569999
Q ss_pred eEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCC
Q 009669 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 320 (529)
Q Consensus 241 ~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~ 320 (529)
+|.|+|||||++|||+++++|+++|.++.+..+.+..+++|..+|+.+++.++|++++|+++|++|+.+|+|||.+++.+
T Consensus 241 ~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~ 320 (664)
T PLN02443 241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGP 320 (664)
T ss_pred EEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCcc
Confidence 99999999999999999999999999987655444789999999999999999999999999999999999999977777
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 009669 321 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 400 (529)
Q Consensus 321 e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~G 400 (529)
|.|+++||.+|+||+|+++.+++++++.+++++.+++....+..++.+..+++|..++++|+++++.+.+++++|+|+||
T Consensus 321 e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cG 400 (664)
T PLN02443 321 ETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCG 400 (664)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999998865544444444445678999999999999999999999999999
Q ss_pred cccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCccccccccccchHHhhhcCCCccccccCCh
Q 009669 401 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480 (529)
Q Consensus 401 G~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (529)
|+||+++++++++++|++..+|+||+|+++++++|+++++.+++..+++.+.++..||.+.......+....+..+++|+
T Consensus 401 G~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 480 (664)
T PLN02443 401 GHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQCRCGVQTAEDWLNP 480 (664)
T ss_pred CccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhhhhcccccccccccccCH
Confidence 99999999999999999999999999999999999999999988888888888899998765544444444556789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHhhccceee
Q 009669 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGNLFILDIGSLKL 523 (529)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (529)
++++++|++|+++++..+++++++ +.+....||..++.+
T Consensus 481 ~~~~~~~~~r~~~~~~~~~~~~~~----~~~~~~a~n~~~~~~ 519 (664)
T PLN02443 481 SVVLEAFEARAARMAVTCAQNLSK----FENQEAGFQELSADL 519 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHH
Confidence 999999999999999999988874 234456677666544
No 3
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-88 Score=741.96 Aligned_cols=500 Identities=35% Similarity=0.578 Sum_probs=440.0
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcc-cCCCHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 009669 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNR-AMLSRKELFKNTLRKAAYAWKRIIELRLSE 83 (529)
Q Consensus 5 ~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~l~~~g~~~ 83 (529)
.+|++||++++||+++|+.+|+|++|+.+++.++++++.++|+|..... ++++|+++++....+..++.+.+. . +
T Consensus 2 ~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~lsr~e~~~~~~~k~~~~~~~~~---~-~ 77 (646)
T PTZ00460 2 QMLEEARKQVQFPVLEMTHLLYGNKEQFETFLERQKFIDNEPMFKVHPDYYNWSRQDQILLNAEKTREAHKHLN---L-A 77 (646)
T ss_pred hhHHHhhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHhcCcccccCCCcccCCHHHHHHHHHHHHHHHHHHcC---c-h
Confidence 5799999999999999999999999999999999999999999997643 569999999998888777776532 2 2
Q ss_pred HHHhHhhhhc--CCcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCe
Q 009669 84 EEASMLRSSV--DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161 (529)
Q Consensus 84 ~~gg~~~~~~--~~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~ 161 (529)
+.......++ +.+.++.+|+.+|+++|..+||+||+++|||++.+|++++|||+|||+||||+++++|||++|+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~de 157 (646)
T PTZ00460 78 NPNYYTPNLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNE 157 (646)
T ss_pred hhhHHhhhhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCE
Confidence 1111112222 34567889999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcce
Q 009669 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (529)
Q Consensus 162 ~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~ 241 (529)
||||||+++|+||||+|+|..||+++|+||++.+++++|+++|+||+||+++|.+.|||+++++++|+| +++.||++
T Consensus 158 fvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G---~~~~dng~ 234 (646)
T PTZ00460 158 FVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMG---YAVKDNGF 234 (646)
T ss_pred EEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccC---cCCCCceE
Confidence 999999999999999986799999999999988778899999999999999999999999999999999 99999999
Q ss_pred EEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCc
Q 009669 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (529)
Q Consensus 242 v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e 321 (529)
|.|||||||++||||++++|+++|.|..++..+ ..+..|..+|+.+++.++|++++|+++|++|+++|+|||++ +++|
T Consensus 235 l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~-~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~-~~~E 312 (646)
T PTZ00460 235 LSFDHYRIPLDSLLARYIKVSEDGQVERQGNPK-VSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTND-NKQE 312 (646)
T ss_pred EEeceEEECHHHhCCcccccCCCCccccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC-CCCC
Confidence 999999999999999999999999887654344 78899999999999999999999999999999999999974 5569
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009669 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (529)
Q Consensus 322 ~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG 401 (529)
.||++||++|+||+||++.+++++++++++++++++........+....++.|..++++|+++++.+.+++++|+|+|||
T Consensus 313 ~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG 392 (646)
T PTZ00460 313 NSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGG 392 (646)
T ss_pred CcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998765443333333345678999999999999999999999999999
Q ss_pred ccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCC-CCccccccccccchHHhhhcCCCccccccCCh
Q 009669 402 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYG-NMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480 (529)
Q Consensus 402 ~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 480 (529)
+||+++++++++|+|++..+|+||+|+++++++|+.+++.+.+..++ +.+.++..||.+.... ..++.+.
T Consensus 393 ~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~ 463 (646)
T PTZ00460 393 HGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKVPEYFNFLSHITEK---------LADQTTI 463 (646)
T ss_pred ccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHhhhh---------ccccCCh
Confidence 99999999999999999999999999999999999999999876554 3555678898654321 1234667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHhhc-ccee
Q 009669 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGNLFILDI-GSLK 522 (529)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 522 (529)
++++++|++|+.+++..++.++++..+.+.+....||. .++.
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~awn~~~~~~ 506 (646)
T PTZ00460 464 ESLGQLLGLNCTILTIYAAKKIMDHINTGKDFQQSWDTKSGIA 506 (646)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHH
Confidence 89999999999999999999999888888888788887 4443
No 4
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.7e-87 Score=675.59 Aligned_cols=502 Identities=35% Similarity=0.542 Sum_probs=424.6
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC--
Q 009669 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS-- 82 (529)
Q Consensus 5 ~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~~-- 82 (529)
.+|..+|+.++|||++|+.+++|.++..+++.++.+.++++|.+...+....+++++++....+ +| .+.+.|..
T Consensus 19 ~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~r---~~-~l~~~gv~~~ 94 (661)
T KOG0135|consen 19 SPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMKR---IK-RLVELGVFKF 94 (661)
T ss_pred CCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHHH---HH-HHHHhccCcc
Confidence 3789999999999999999999933478999999999999996666566778888888765433 33 34434542
Q ss_pred -------HHH-----HhHhhhhcCC--cchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCC
Q 009669 83 -------EEE-----ASMLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG 148 (529)
Q Consensus 83 -------~~~-----gg~~~~~~~~--~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~ 148 (529)
+.. .-...++.+. +.-+.+|+.+|++++..+||+.+++ |+..+.+.+++|||||||++||||+++
T Consensus 95 ~~~~~~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~ 173 (661)
T KOG0135|consen 95 WLVEDGPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKG 173 (661)
T ss_pred eeecCchHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccc
Confidence 111 1112233343 4567899999999999999998887 999999999999999999999999999
Q ss_pred CceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCc
Q 009669 149 LETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 228 (529)
Q Consensus 149 ~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k 228 (529)
|+|||||||.+++||||||++++.|+||||+|.+|+|++|+|++...|.++|+|.|||||||++|+...|||+|+|++.|
T Consensus 174 I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K 253 (661)
T KOG0135|consen 174 IQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHK 253 (661)
T ss_pred eeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcceEEecceecCcccccccccccCCCCceeccCc---hhh-HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009669 229 FGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV---PRQ-LLYGTMVYVRQTIVADASCALSRAVCIAT 304 (529)
Q Consensus 229 ~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~---~~~-~~~~~l~~~r~~~aa~~~G~~~~al~~av 304 (529)
.| ++|+|||++.|+|||||++|||+++++|+++|.|+++.. .++ ..++.+..+|+.++..++|.++-+++||+
T Consensus 254 ~G---lnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAI 330 (661)
T KOG0135|consen 254 IG---LNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAI 330 (661)
T ss_pred cc---cccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhh
Confidence 99 999999999999999999999999999999999998422 222 56788899999999999999999999999
Q ss_pred HHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHH
Q 009669 305 RYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLT 384 (529)
Q Consensus 305 ~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~ 384 (529)
||+..|+|||.+.+++|+||++||++|+||.|+++.+++++++..++...|.+...+...+.. ..++|+++|++|.++
T Consensus 331 RYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n--~keiHALsSg~K~~~ 408 (661)
T KOG0135|consen 331 RYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVN--SKEIHALSSGLKPVA 408 (661)
T ss_pred hhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHhccchhh
Confidence 999999999998888999999999999999999999999999999999999887766554332 478999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCccccccccccchHH
Q 009669 385 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL 464 (529)
Q Consensus 385 ~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (529)
||...+++++||++||||||..++.++.+..|.++++||||||+|++||+++.||++|.....+ .|.++..|++.....
T Consensus 409 TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~~~~e-~p~~~~~~ln~~~s~ 487 (661)
T KOG0135|consen 409 TWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVSQKKE-TPLSFVGFLNEYPSS 487 (661)
T ss_pred hHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHHhhcc-CCchHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999874443 455577787766555
Q ss_pred hhhcCCCccc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHhhc
Q 009669 465 MQCHCGVQKA-EDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGNLFILDI 518 (529)
Q Consensus 465 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (529)
.....+.... ..+.++++++..|..|...|+++.+...+.+. .+.+.-.++|.
T Consensus 488 ~~~~~~s~~~~d~l~~~~f~~~~~~l~~~lLl~t~a~~~~~l~-~g~~~fea~n~ 541 (661)
T KOG0135|consen 488 PDPVLASQLVSDTLRSSQFQLCYFWLRCHLLLETVASRERQLQ-SGLSSFEARNK 541 (661)
T ss_pred CCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHH
Confidence 4444333333 44456777774555555556777776666654 44443334443
No 5
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=4e-84 Score=711.11 Aligned_cols=492 Identities=31% Similarity=0.494 Sum_probs=419.1
Q ss_pred hccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC---------cccCCCHHHHHHHHHHHHHHHHHHHHHcCC
Q 009669 11 RKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD---------NRAMLSRKELFKNTLRKAAYAWKRIIELRL 81 (529)
Q Consensus 11 r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~---------~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~ 81 (529)
.++++||+++|+.+|+| ++.++|+++++++.++|.|... +.+++++++.++.... .|+.+.+.|+
T Consensus 46 ~~~~sf~~~~l~~~l~g--~~~~~r~~~~~~~~~~p~f~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~l~~~g~ 119 (680)
T PLN02312 46 NESYAFDVKEMRKLLDG--HNLEDRDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREITMK----RILYLLERGV 119 (680)
T ss_pred cccCCCCHHHHHHHhCC--ccHHHHHHHHHHHhcCccccccccccccccCCccCCCHHHHHHhHHH----HHHHHHHhhh
Confidence 77899999999999998 5688999999999999999754 4466888888876544 4455555553
Q ss_pred -----CHHH-HhHh--------hhhcCC--cchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCC
Q 009669 82 -----SEEE-ASML--------RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145 (529)
Q Consensus 82 -----~~~~-gg~~--------~~~~~~--~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd 145 (529)
++.. ++.. .+..+. +.++.+|+.+|+++|..+||+|||++|||++.+|++++|||+|||+||||
T Consensus 120 ~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSd 199 (680)
T PLN02312 120 FRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSN 199 (680)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcc
Confidence 2211 1101 111222 23577888899999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEccc
Q 009669 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDI 225 (529)
Q Consensus 146 ~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~ 225 (529)
+++++|||+||+++|+|||||||++|+||||+|++..||+++|+||++++++++|+|+|+||+||.++ .+.|||+++++
T Consensus 200 v~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~-~~~PGV~ig~~ 278 (680)
T PLN02312 200 VRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDG-NICPNIRIADC 278 (680)
T ss_pred hhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCC-CCCCCEEeccC
Confidence 99999999999888999999999999999999954899999999999887788999999999999754 78999999999
Q ss_pred CCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCc---hh-hHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 009669 226 GMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV---PR-QLLYGTMVYVRQTIVADASCALSRAVC 301 (529)
Q Consensus 226 ~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~---~~-~~~~~~l~~~r~~~aa~~~G~~~~al~ 301 (529)
++|+| +++.||++|.|||||||++|||+++++|+++|.|.++.. .. ..++..|..+|+.+++.++|++++|++
T Consensus 279 ~~K~G---~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~ 355 (680)
T PLN02312 279 GHKIG---LNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLA 355 (680)
T ss_pred CCccc---ccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999998422 22 245688999999999999999999999
Q ss_pred HHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHH
Q 009669 302 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 381 (529)
Q Consensus 302 ~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK 381 (529)
+|++|+++|+|||.+++++|+||++||++|+||+||++.+|++++.+.++.+.+++. ......+.|..++++|
T Consensus 356 iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~-------~~~~~~~~~~~as~aK 428 (680)
T PLN02312 356 IAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR-------TPESNKAIHVVSSGFK 428 (680)
T ss_pred HHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccccchhHHHHHHHH
Confidence 999999999999987788899999999999999999999999999888887776531 1111246889999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCccc-c-ccccc
Q 009669 382 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVG-T-TTYMG 459 (529)
Q Consensus 382 ~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~-~-~~~l~ 459 (529)
+++++.+.+++++|+|+|||+||++++++++++||+++.+|+||+|++|++++||++++.+.+.++++.+.+ + .+|++
T Consensus 429 a~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~~~~~~ 508 (680)
T PLN02312 429 AVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEYVSAKKRNKPFKGLGLEHMN 508 (680)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999988877776544 2 56764
Q ss_pred cchHHhhhcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHhhcccee
Q 009669 460 RAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGNLFILDIGSLK 522 (529)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (529)
.... ......+..+++|+++++++|++|+++++..+++++++..+.+.+....||.+.+.
T Consensus 509 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~a~n~~~~~ 568 (680)
T PLN02312 509 GPRP---VIPTQLTSSTLRDSQFQLNLFCLRERDLLERFASEVSELQSKGESREFAFLLSYQL 568 (680)
T ss_pred cccc---cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHH
Confidence 2110 00112245679999999999999999999999999998888888777888866553
No 6
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.2e-83 Score=705.36 Aligned_cols=484 Identities=45% Similarity=0.728 Sum_probs=427.2
Q ss_pred chHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC-cccCCCHHHHHHHHHHHHHHHHHHHHHcCCC-H
Q 009669 6 QLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD-NRAMLSRKELFKNTLRKAAYAWKRIIELRLS-E 83 (529)
Q Consensus 6 ~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~~-~ 83 (529)
||++||++++||+++|+.+|+|+++..+.++++.+++.++|.|... ...+++|++.++....+..++...+.++++. .
T Consensus 2 ~l~~eR~~~~f~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (610)
T cd01150 2 DLDKERASATFDWKALTHILEGGEENLRRKREVERELESDPLFQRELPSKHLSREELYEELKRKAKTDVERMGELMADDP 81 (610)
T ss_pred hhHHhhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 8999999999999999999999899899999999999999999875 3356788888887777766777767777773 2
Q ss_pred HHHhHhh---hhcC--CcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCC
Q 009669 84 EEASMLR---SSVD--EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (529)
Q Consensus 84 ~~gg~~~---~~~~--~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~ 158 (529)
....... ...+ .+.++.+|+.+|+++|..+||+||+++|||++.+|+++||||+|||+||||+.+++|||+||++
T Consensus 82 ~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~ 161 (610)
T cd01150 82 EKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPL 161 (610)
T ss_pred HHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCC
Confidence 2222111 1122 2346788999999999999999999999999999999999999999999999999999999977
Q ss_pred CCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCC
Q 009669 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD 238 (529)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~ 238 (529)
+++||||||+++|+||||+|++..|++++|+||+..+++++|+++|+||+||+++|.+.|||+++++++|+| +++.|
T Consensus 162 t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G---~~g~d 238 (610)
T cd01150 162 TQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMG---LNGVD 238 (610)
T ss_pred CCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccC---CCCCC
Confidence 799999999999999999996677999999999987777899999999999999999999999999999999 99999
Q ss_pred cceEEecceecCcccccccccccCCCCceeccCc-hh---hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecC
Q 009669 239 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV-PR---QLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 314 (529)
Q Consensus 239 ~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~-~~---~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg 314 (529)
|+.|.|||||||++|||+++++|+++|.|..+.. +. ..+...+..+|+.+++.++|.+++|+++|++|+++|+|||
T Consensus 239 ng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg 318 (610)
T cd01150 239 NGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFG 318 (610)
T ss_pred eEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecC
Confidence 9999999999999999999999999999988644 22 1456677788999999999999999999999999999999
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHH
Q 009669 315 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 394 (529)
Q Consensus 315 ~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~ 394 (529)
++++++|.||++||++|+||+|+++.++++++...++...+......++.++....++.|..++++|+++++.+.+++++
T Consensus 319 ~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~ 398 (610)
T cd01150 319 PKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQE 398 (610)
T ss_pred CCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98788999999999999999999999999999888887777665544444444445678999999999999999999999
Q ss_pred HHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCccccccccccchHHhhhcCCCccc
Q 009669 395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 474 (529)
Q Consensus 395 ~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 474 (529)
|+|+|||+||+.+++++++++|++..+|+||+|+++++++++++++.+++..+
T Consensus 399 ~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~~~~--------------------------- 451 (610)
T cd01150 399 CREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQAFS--------------------------- 451 (610)
T ss_pred HHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhhhcC---------------------------
Confidence 99999999999999999999999999999999999999999999998754321
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHhhccceeeE
Q 009669 475 EDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGNLFILDIGSLKLF 524 (529)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (529)
+++++++|++|+++++..+++++++..+.+.+....||..++.+.
T Consensus 452 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~awN~~~~~l~ 496 (610)
T cd01150 452 -----LADYLEAYEWLAAHLLRHAAAQLEKLKKSGSGSFEARNNSQVHLR 496 (610)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999988888888889998776543
No 7
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.3e-82 Score=700.85 Aligned_cols=498 Identities=33% Similarity=0.502 Sum_probs=414.4
Q ss_pred ccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHH-
Q 009669 12 KKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEE- 85 (529)
Q Consensus 12 ~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~- 85 (529)
.+++||+++|+.+|++ ++.++++++++|+.++|.|..+. ..+.++..+.. ..++++.+.++|+ +++.
T Consensus 48 ~~~~f~~~~l~~~l~~--~~~~~r~~v~~~~~~~~~~~~~~--~~~~~~~~e~~---~~~l~~~~~~~g~~~~~~~~~~~ 120 (686)
T PLN02636 48 IKLSVNTEKLSLYMRG--KHRDIQEKIYEFFNSRPDLQTPV--EISKDEHRELC---MRQLTGLVREAGIRPMKYLVEDP 120 (686)
T ss_pred ccCCCCHHHHHhhcCC--cHHHHHHHHHHHHHhCccccCCc--hhhHHHhhhhH---HHHHHHHHHhcCccccccccCCH
Confidence 5799999999999987 45689999999999998774431 22222222221 1456777888887 2111
Q ss_pred --HhHh---hhhcCC--cchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCC
Q 009669 86 --ASML---RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (529)
Q Consensus 86 --gg~~---~~~~~~--~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~ 158 (529)
.... .+..+. +.++.+|+.+|+++|..+||+|||++|||++.+|++++|||+|||+||||+++++|||+||++
T Consensus 121 ~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~ 200 (686)
T PLN02636 121 AKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPL 200 (686)
T ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCC
Confidence 1111 111122 345778889999999999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecC------CCCcceEEEEEEeccCCCCCCCCCeEEcccCCccccc
Q 009669 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD------GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 232 (529)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~------g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~ 232 (529)
+|+||||||+++|+||||+|++..||+++|+||++.+ ++++|+|+||||+||+++|.+.|||+++++++|+|
T Consensus 201 ~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G-- 278 (686)
T PLN02636 201 TDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVG-- 278 (686)
T ss_pred CCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccC--
Confidence 8999999999999999999954569999999999743 24689999999999999999999999999999999
Q ss_pred ccCCCCcceEEecceecCcccccccccccCCCCceeccCc--hh--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 009669 233 AYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNV--PR--QLLYGTMVYVRQTIVADASCALSRAVCIATRYSA 308 (529)
Q Consensus 233 ~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~--~~--~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~ 308 (529)
+++.||++|.|||||||++|||+++++|+++|.|.++.. .+ ..+++.|..+|+.+++.++|++++|+++|++|+.
T Consensus 279 -~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~ 357 (686)
T PLN02636 279 -LNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSL 357 (686)
T ss_pred -CCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987311 11 2678999999999999999999999999999999
Q ss_pred cceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHH
Q 009669 309 VRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTAT 388 (529)
Q Consensus 309 ~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a 388 (529)
+|+|||+ ++++|.||++||.+|++|+||++.+++++++...+.+.+..... .++.....+.|..++++|+++++.+
T Consensus 358 ~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~as~aK~~~t~~a 433 (686)
T PLN02636 358 LRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKK---THDDQLVADVHALSAGLKAYITSYT 433 (686)
T ss_pred cCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccchhhHHHHHHHHHHHHHHH
Confidence 9999997 45679999999999999999999999998887777666553321 2232334578999999999999999
Q ss_pred HHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCccccccccccchHH-hhh
Q 009669 389 ADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL-MQC 467 (529)
Q Consensus 389 ~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 467 (529)
.+++++|+|+|||+||+++++++++|||+++.+|+||+|+||++++|++|++.+++..++....++..||.+.... ...
T Consensus 434 ~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~ 513 (686)
T PLN02636 434 AKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYKEKFQGGTLSVTWNYLRESMNTYLSQ 513 (686)
T ss_pred HHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999998877777777788899765321 111
Q ss_pred cCC----CccccccCChHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHhhccceeeE
Q 009669 468 HCG----VQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGNLFILDIGSLKLF 524 (529)
Q Consensus 468 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (529)
+++ ..+..++.|+++++++|++|+++++..++.++++..+.+ +....||..++.+.
T Consensus 514 ~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~-~~~~awn~~~~~l~ 573 (686)
T PLN02636 514 PNPVTTRWEGEEHLRDPKFQLDAFRYRTSRLLQTAALRLRKHSKTL-GSFGAWNRCLNHLL 573 (686)
T ss_pred cccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHH
Confidence 111 123456999999999999999999999999999775443 44778888777554
No 8
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-62 Score=465.74 Aligned_cols=362 Identities=21% Similarity=0.288 Sum_probs=314.5
Q ss_pred HHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcCC---
Q 009669 24 VWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE--- 95 (529)
Q Consensus 24 ~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~--- 95 (529)
.+.-++||..+|+++++|++++-.... ..+++...+ ...+.+|+.++++|+ ++++||.+.++++.
T Consensus 38 ~~g~~~e~~~~r~sv~kF~qeelaP~a---~eidk~n~~----~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~iv 110 (421)
T KOG0141|consen 38 MFGLSDEQDQLRESVRKFFQEELAPHA---SEIDKANEF----KDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIV 110 (421)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhhcchh---hhhhhcCCc----chHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHH
Confidence 344568999999999999987643221 112222222 124679999999887 47888887665421
Q ss_pred -----------cchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEE
Q 009669 96 -----------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 164 (529)
Q Consensus 96 -----------~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vL 164 (529)
...++.|.++++.-|.+.|++||+++|||++.+|+-+|++|||||++|||+.++.+.|+++ |+.|||
T Consensus 111 mEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~--g~~yiL 188 (421)
T KOG0141|consen 111 MEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKK--GDDYIL 188 (421)
T ss_pred HHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceec--CCcEEe
Confidence 3457899999999999999999999999999999999999999999999999999999998 899999
Q ss_pred ecCCCCceeeccCCCCCCCcEEEEEEEEecC--CCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceE
Q 009669 165 HSPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 242 (529)
Q Consensus 165 ntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~--g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v 242 (529)
| |.|+||+| |+.||.++|+|+++.. ...+|+++|||. +.+||++..+.-+|+| |++++++++
T Consensus 189 N-----GsK~witN-G~~advliVyAkTd~~a~~~~hGIt~FiVE-------kgm~GFs~~~KLdKlG---mrgsdTcEL 252 (421)
T KOG0141|consen 189 N-----GSKFWITN-GPDADVLIVYAKTDHSAVPPSHGITAFIVE-------KGMPGFSTAQKLDKLG---MRGSDTCEL 252 (421)
T ss_pred c-----CcEEEEec-CCCCcEEEEEEecCCCCCCCcCceEEEEEc-------CCCcccccchhhHhhc---CCCCcchhe
Confidence 9 99999999 9999999999999876 345999999999 9999999999999999 999999999
Q ss_pred EecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcc
Q 009669 243 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 322 (529)
Q Consensus 243 ~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~ 322 (529)
.|+|++||++|+||. ++.++- .++..+...|+.+++..+|.++.+++.+..|+++|+|||+
T Consensus 253 vFed~~vpas~ilg~------enkGvY------vlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk------- 313 (421)
T KOG0141|consen 253 VFEDCKVPASNILGE------ENKGVY------VLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGK------- 313 (421)
T ss_pred ehhhccCcHHHhcCc------CCceEE------EEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCC-------
Confidence 999999999999995 443332 3445677899999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 009669 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (529)
Q Consensus 323 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~ 402 (529)
+|++||.+|+++|+|+..+.+.|+.++.++...+. +.- -...+++++.|+++.+..++-+|+|++||.
T Consensus 314 ~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~-------g~~-----~~kdcag~il~aaE~~tqVald~iQ~~GGn 381 (421)
T KOG0141|consen 314 KIGHFQLLQGKLADMYTTLCASRSYVYNVARACDA-------GNV-----DPKDCAGVILYAAEKATQVALDAIQCLGGN 381 (421)
T ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-------CCC-----ChhhhhhhhhhHhhhhHHHHHHHHhhccCc
Confidence 99999999999999999999999999988776542 221 122378999999999999999999999999
Q ss_pred cccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009669 403 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (529)
Q Consensus 403 Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (529)
||.+++|.++++||++.+.++.|++++.+..|+|.+.++
T Consensus 382 GYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 382 GYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred ccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998764
No 9
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.3e-62 Score=470.35 Aligned_cols=341 Identities=23% Similarity=0.298 Sum_probs=301.9
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC---------
Q 009669 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD--------- 94 (529)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~--------- 94 (529)
|++.++.+++++|..+.- .+. ...++++..++ ..+.+.+.++|+ ++++||.|..++.
T Consensus 39 E~e~~l~~tvrkfa~~~i-~Pl--v~~mD~~~~~~------~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEis 109 (398)
T KOG0139|consen 39 ETEQMLQKTVRKFAQEEI-KPL--VREMDRESRYP------ASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEIS 109 (398)
T ss_pred cHHHHHHHHHHHHHHHhc-chH--HHhhhhhccCC------HHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHh
Confidence 677899999999986532 111 02344444433 446677888886 6899998876642
Q ss_pred ---C--cchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009669 95 ---E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (529)
Q Consensus 95 ---~--~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~ 169 (529)
. ++.+.+|..|..+.|..+||+|||++|+|.+ .|+.++|||++||+.|||+..+.|+|++| ||.|+||
T Consensus 110 k~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~--Gd~~viN---- 182 (398)
T KOG0139|consen 110 KVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKD--GDDYVIN---- 182 (398)
T ss_pred ccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhc--CCeEEEe----
Confidence 2 4456788889999999999999999888886 67889999999999999999999999998 9999999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceec
Q 009669 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (529)
Q Consensus 170 ~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (529)
|+|+||+| +..|++++|||.+++..++.|+++|+|| ++.||++++...+|+| +|+++++.|.|+||||
T Consensus 183 -GsKmWItN-~~~A~~~lVfan~d~~~~~Kgit~fiV~-------rd~~Gl~~~k~eDKLG---mRaSsTcql~fedVrV 250 (398)
T KOG0139|consen 183 -GSKMWITN-AGEADWFLVFANADPSKGYKGITCFIVP-------RDTPGLSLGKKEDKLG---MRASSTCQLHFEDVRV 250 (398)
T ss_pred -cceeeecC-CcccceEEEEEecChhhccCceeEEEee-------CCCCCcccCCcccccc---ccccceeeEEeccccc
Confidence 99999999 9999999999999877778999999999 8999999999999999 9999999999999999
Q ss_pred CcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHH
Q 009669 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (529)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~ 329 (529)
|.+++|| +.|.+++ .....++.+|+.++++.+|.++.|++.|+.|+++|.|||+ +|.+||.
T Consensus 251 pks~IlG------e~G~Gyk------yAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk-------~l~d~Q~ 311 (398)
T KOG0139|consen 251 PKSSILG------EYGKGYK------YAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGK-------RLLDFQG 311 (398)
T ss_pred cchhhcc------cCCcchH------HHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcc-------hhhhHHH
Confidence 9999999 4788877 7788899999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCC
Q 009669 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (529)
Q Consensus 330 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (529)
+||+||++.+++|++|.++|+++++-++. .+...+++|+|.++++.|..++..|+|..||.||+.+++
T Consensus 312 iQhqiA~~~teiEaaRlL~ynaAr~k~~G------------~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~p 379 (398)
T KOG0139|consen 312 LQHQIADMATEIEAARLLVYNAARMKDQG------------LPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDFP 379 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------CchHHHHHHHHHhhhhhhhHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999876531 235566899999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccHH
Q 009669 410 LPELFAVYVPACTYEGDNI 428 (529)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~ 428 (529)
.+++|||++...+|||+.+
T Consensus 380 aek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 380 AEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred HHHHhhhceeeeeecCCCC
Confidence 9999999999999999863
No 10
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-60 Score=451.36 Aligned_cols=360 Identities=22% Similarity=0.304 Sum_probs=312.8
Q ss_pred HcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcCC----
Q 009669 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE---- 95 (529)
Q Consensus 25 ~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~---- 95 (529)
+.-+++|.++++.+++|..+.-+ +.. ..++....++.. +.+...++|+ ++++||.+.+.++.
T Consensus 26 f~L~e~qke~q~~A~kFa~~e~~-P~a--ae~Dk~ge~P~~------iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~ 96 (408)
T KOG0140|consen 26 FGLTEDQKEFQEAARKFAKDEMI-PNA--AEYDKSGEFPWE------IIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIF 96 (408)
T ss_pred cCcchHHHHHHHHHHHHHHHhhc-cch--hhhcccCCCcHH------HHHHHHHcccCcccCccccCCCCchhHHHHHHH
Confidence 35568999999999999876532 111 122233333322 2233345665 68888888765543
Q ss_pred ----------cchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEe
Q 009669 96 ----------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (529)
Q Consensus 96 ----------~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLn 165 (529)
...+..| +|+.+.|..+|++|||++|||+++...++++||+||||+|||+.++.|+|++. ||+||||
T Consensus 97 E~LayGCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~Kk--GDeYiiN 173 (408)
T KOG0140|consen 97 EALAYGCTGIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN 173 (408)
T ss_pred HHHHccchhHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhc--CCEEEEc
Confidence 1223444 58899999999999999999999999999999999999999999999999987 9999999
Q ss_pred cCCCCceeeccCCCCCCCcEEEEEEEEecCC---CCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceE
Q 009669 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITDG---QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL 242 (529)
Q Consensus 166 tp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g---~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v 242 (529)
|+|.||+| +.+|+|++|+||+++++ ...++++|+|+ .+.||++.+....+|| .+..|+-.|
T Consensus 174 -----GsKawItg-~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe-------~dTpGlt~GkKE~nmG---qr~sdTR~i 237 (408)
T KOG0140|consen 174 -----GSKAWITG-AGHANWYFVLARTDPDPKTPAGKAFTAFIVE-------GDTPGLTRGKKEKNMG---QRCSDTRGI 237 (408)
T ss_pred -----Cceeeeec-CCccceEEEEEecCCCCCCCCCcceEEEEEe-------CCCCCcCcChhhhccc---ccCCCCcee
Confidence 99999999 89999999999999874 34789999999 8999999999999999 999999999
Q ss_pred EecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcc
Q 009669 243 RFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 322 (529)
Q Consensus 243 ~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~ 322 (529)
+|+||+||.+|+|+. +|.++. +.++++..+|..+++.++|.++++++.+++|+.+|+|||.
T Consensus 238 tFEDvrVP~~Nvlg~------~G~GFk------vAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~------- 298 (408)
T KOG0140|consen 238 TFEDVRVPKENVLGA------PGAGFK------VAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGT------- 298 (408)
T ss_pred eeeecccchhccccC------CCccce------ehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCc-------
Confidence 999999999999995 888887 7788999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 009669 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (529)
Q Consensus 323 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~ 402 (529)
||.++|.+|..|++|...++.+|.+.+.+++.+|+ +. ++ ...+|++|.++++.+..++..++|++||.
T Consensus 299 ~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~-------~r----~~-sy~aSiAK~fA~D~an~~at~AvQifGG~ 366 (408)
T KOG0140|consen 299 PIANHQAVQFMLADMAINLELARLMTRNAAWEVDN-------GR----RN-SYYASIAKLFATDTANQAATNAVQIFGGN 366 (408)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC----cc-hHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999887752 12 23 56789999999999999999999999999
Q ss_pred cccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHHH
Q 009669 403 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVS 443 (529)
Q Consensus 403 Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~ 443 (529)
||..|+|++.+.||++.+.+|||++++++..|+|.||..+.
T Consensus 367 Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 367 GFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred CccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998764
No 11
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.9e-54 Score=452.17 Aligned_cols=353 Identities=18% Similarity=0.167 Sum_probs=294.7
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC-------
Q 009669 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (529)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (529)
-++||.++++++++|+.++..... .+...+....+..++|+.+.++|| |+++||.+.++.+
T Consensus 4 ~~~eq~~l~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~ee 76 (378)
T TIGR03203 4 LSEEQRLLKESVEGLLKTSYDFDS-------RKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEA 76 (378)
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHH-------HHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHH
Confidence 357899999999999987643211 111112222244678999999998 5788887654432
Q ss_pred -----CcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009669 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (529)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~ 169 (529)
.+.|+..+..++...|..+|+++||++|||++++|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 77 l~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~--g~~~~l~---- 150 (378)
T TIGR03203 77 LGKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKT--GDGWVID---- 150 (378)
T ss_pred HhCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEc--CCEEEEE----
Confidence 12343333334556788999999999999999999999999999999999999999999988 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEecCC-CCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEeccee
Q 009669 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (529)
Q Consensus 170 ~G~K~~v~~l~~~A~~~lV~Ar~~~~g-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (529)
|+|+||++ +..||+++|+|++..+. +..|+.+|+|| .+.|||++.+...++| + ..++|.||||+
T Consensus 151 -G~K~~vt~-a~~Ad~~lv~ar~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~g---~---~~~~l~fd~v~ 215 (378)
T TIGR03203 151 -GEKFVVLN-GETADTLIVTARTKGARRDRTGIGVFLVP-------AGAKGVTIKGYPTQDG---L---HAADITFTGVV 215 (378)
T ss_pred -eEEEEecC-CccCCEEEEEEecCCCCCCCCceEEEEEE-------CCCCCceeccccccCC---C---ceeeEEECCCc
Confidence 99999999 89999999999985432 34689999999 7889999988766666 4 45889999999
Q ss_pred cCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchH
Q 009669 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (529)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q 328 (529)
||.+++|+. .|.++. .+...+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 216 vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~-------pi~~~Q 276 (378)
T TIGR03203 216 VGADAAIGD------PENALP------LIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGV-------PIGSFQ 276 (378)
T ss_pred ccHHhhcCC------cchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCc-------cchhhH
Confidence 999999984 455443 5667788999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcC
Q 009669 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (529)
Q Consensus 329 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~ 408 (529)
.+||+|++|.+.+++++++++++++..+. +. ..+....++++|+++++.+.+++++|+|+|||+||++++
T Consensus 277 ~vq~~lAdm~~~~e~ar~l~~~aa~~~~~--------~~--~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~ 346 (378)
T TIGR03203 277 VLQHRAADMFVAVEQARSMAMFATMASDF--------DD--AKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEA 346 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccc
Confidence 99999999999999999999998876541 10 012345688999999999999999999999999999999
Q ss_pred CHHHHhhhhcccccccccHHHHHHHHHH
Q 009669 409 GLPELFAVYVPACTYEGDNIVLLLQVAR 436 (529)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~ 436 (529)
+++++|||++...+++|++++++.+++.
T Consensus 347 ~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 347 KIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999999887
No 12
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=3.7e-51 Score=432.30 Aligned_cols=367 Identities=21% Similarity=0.246 Sum_probs=305.9
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhh
Q 009669 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRS 91 (529)
Q Consensus 17 ~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~ 91 (529)
=++.|+. +.+++|.++++.+++|++++..... .++.. ....++|+.+.+.|| |+++||.+.+
T Consensus 19 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~-----~d~~~------~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~ 85 (409)
T cd01161 19 YPSVLTE--EQTEELNMLVGPVEKFFEEVNDPAK-----NDQLE------KIPRKTLTQLKELGLFGLQVPEEYGGLGLN 85 (409)
T ss_pred CccccCc--cCCHHHHHHHHHHHHHHHHhCCchh-----hcccc------CCCHHHHHHHHhCCCCCCCCChhhCCCCCC
Confidence 3455555 3457899999999999998643211 01111 123568999999998 5778876544
Q ss_pred hcC-----------Cc--chhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCC
Q 009669 92 SVD-----------EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (529)
Q Consensus 92 ~~~-----------~~--~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~ 158 (529)
+.. .+ ..+.+|..+....+..+|+++|+++|||++++|+.++|+++|||++|||+..++|+|+++++
T Consensus 86 ~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~ 165 (409)
T cd01161 86 NTQYARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSED 165 (409)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCC
Confidence 321 11 12345554545567889999999999999999999999999999999999999999999766
Q ss_pred CCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEec---CC-CCcceEEEEEEeccCCCCCCCCCeEEcccCCccccccc
Q 009669 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT---DG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 234 (529)
Q Consensus 159 ~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~---~g-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~ 234 (529)
+++|+|| |+|+|++| +..||+++|.|++.. ++ ...++.+|+|| .+.|||++.+.|+++| +
T Consensus 166 g~g~~l~-----G~K~~vs~-~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp-------~~~~gv~~~~~~~~~G---~ 229 (409)
T cd01161 166 GKHYVLN-----GSKIWITN-GGIADIFTVFAKTEVKDATGSVKDKITAFIVE-------RSFGGVTNGPPEKKMG---I 229 (409)
T ss_pred CCEEEEE-----eEEEeecC-CCcCCEEEEEEEcCCCCCCCCCCCceEEEEEe-------CCCCCcccCCcccccC---C
Confidence 7899999 99999999 899999999999752 22 13578899999 7789999999999999 9
Q ss_pred CCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecC
Q 009669 235 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 314 (529)
Q Consensus 235 ~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg 314 (529)
++++++.|.|+||+||++++|+. .|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||
T Consensus 230 ~g~~s~~v~~~~v~Vp~~~~lg~------~g~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg 297 (409)
T cd01161 230 KGSNTAEVYFEDVKIPVENVLGE------VGDGFK------VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFG 297 (409)
T ss_pred CCCCceEEEeccEEECHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCC
Confidence 99999999999999999999984 454443 455677889999999999999999999999999999999
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHH
Q 009669 315 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 394 (529)
Q Consensus 315 ~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~ 394 (529)
+ ||.+||.+|++|+++.+.+++++.+++.+++.+++ +. ..+....++++|+++++.+.+++++
T Consensus 298 ~-------~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~-------~~---~~~~~~~~~~aK~~a~~~a~~v~~~ 360 (409)
T cd01161 298 K-------KIHEFGLIQEKLANMAILQYATESMAYMTSGNMDR-------GL---KAEYQIEAAISKVFASEAAWLVVDE 360 (409)
T ss_pred c-------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC---CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999998876652 11 1134556899999999999999999
Q ss_pred HHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009669 395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (529)
Q Consensus 395 ~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (529)
|+|+|||+||+++++++++|||++...+++|++++++.+|++.+|+.
T Consensus 361 a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 361 AIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999998764
No 13
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=9e-51 Score=424.71 Aligned_cols=354 Identities=24% Similarity=0.308 Sum_probs=298.9
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhc---------
Q 009669 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV--------- 93 (529)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~--------- 93 (529)
+|+|.++++.+++|+.++..... ..++....+..++|+.+.+.|| |+++||.+.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l 72 (375)
T cd01162 2 NEEQRAIQEVARAFAAKEMAPHA---------ADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEAL 72 (375)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch---------hhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999987532111 1111112234568999999998 578887654432
Q ss_pred ---CCcc--hhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009669 94 ---DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (529)
Q Consensus 94 ---~~~~--~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~ 168 (529)
+.+. .+.+|. ++...+..+|+++|+++|+|++.+|+.++|+++|||++|||+..+.|+|+++ +++|+||
T Consensus 73 ~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~--- 146 (375)
T cd01162 73 STGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLN--- 146 (375)
T ss_pred HhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEE---
Confidence 1122 233443 5666788899999999999999999999999999999999999999999998 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEeccee
Q 009669 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (529)
Q Consensus 169 ~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (529)
|+|+|+++ +..||+++|+|++..+ ...++++|+|| .+.|||++.+.|+++| +++++++.|.||||+
T Consensus 147 --G~k~~vs~-~~~ad~~~v~a~~~~~-~~~~~~~~lv~-------~~~~gv~v~~~~~~~g---~~~~~~~~l~f~~v~ 212 (375)
T cd01162 147 --GSKAFISG-AGDSDVYVVMARTGGE-GPKGISCFVVE-------KGTPGLSFGANEKKMG---WNAQPTRAVIFEDCR 212 (375)
T ss_pred --EEEEEecC-CCCCCEEEEEEEecCC-CCCceEEEEEe-------CCCCCeecCCcccccC---CCCCCeeEEEECceE
Confidence 99999999 8999999999997543 23578899999 7789999999999999 999999999999999
Q ss_pred cCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchH
Q 009669 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (529)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q 328 (529)
||.+++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||
T Consensus 213 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~-------~l~~~~ 273 (375)
T cd01162 213 VPVENRLGG------EGQGFG------IAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGK-------PLADFQ 273 (375)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhH
Confidence 999999984 555443 4455677889999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcC
Q 009669 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (529)
Q Consensus 329 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~ 408 (529)
.+|++|++|.+.+++++.+++.+++.+++ +. ++....++++|+++++.+.++++.++|+|||+||++++
T Consensus 274 ~vq~~la~~~~~l~~a~~~~~~a~~~~~~-------~~----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~ 342 (375)
T cd01162 274 ALQFKLADMATELVASRLMVRRAASALDR-------GD----PDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDY 342 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 99999999999999999999998876652 11 12234578899999999999999999999999999999
Q ss_pred CHHHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009669 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (529)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (529)
+++++|||++...+++|++++++.++++.+++
T Consensus 343 ~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 343 PVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred hHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998864
No 14
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1e-50 Score=425.88 Aligned_cols=352 Identities=22% Similarity=0.257 Sum_probs=296.9
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC----CHHHHhHhhhhcC--------
Q 009669 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL----SEEEASMLRSSVD-------- 94 (529)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~----~~~~gg~~~~~~~-------- 94 (529)
-++||.++++.+++|+.+...... .+ .+....+..++|+.+.+.|| |+++||.+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~l 83 (386)
T cd01151 13 LTEEERAIRDTAREFCQEELAPRV--------LE-AYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIAREV 83 (386)
T ss_pred CCHHHHHHHHHHHHHHHHhcCccH--------HH-HHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHHH
Confidence 457899999999999987532110 01 11111234578999999886 5777876544321
Q ss_pred ----Cc--chhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009669 95 ----EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (529)
Q Consensus 95 ----~~--~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~ 168 (529)
.+ .++.+|..++..+|..+|+++|+++|+|++++|++++|+++|||++|||+.++.|+|+++ +++|+||
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln--- 158 (386)
T cd01151 84 ERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLN--- 158 (386)
T ss_pred HhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEE---
Confidence 12 234455556666788999999999999999999999999999999999999999999998 8899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEeccee
Q 009669 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (529)
Q Consensus 169 ~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (529)
|+|+|+++ +..||+++|+|++..+ .++++|+|| ...|||++.+.|+++| +++++++.|.|+||+
T Consensus 159 --G~K~~is~-~~~Ad~~lv~ar~~~~---~~~~~flVp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~f~~v~ 222 (386)
T cd01151 159 --GSKTWITN-SPIADVFVVWARNDET---GKIRGFILE-------RGMKGLSAPKIQGKFS---LRASITGEIVMDNVF 222 (386)
T ss_pred --EEEEeecC-CCcCCEEEEEEEECCC---CcEEEEEEc-------CCCCCeecCCCCCCcC---CCCCceeEEEEccEE
Confidence 99999999 8999999999997532 468899999 7789999999999999 999999999999999
Q ss_pred cCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchH
Q 009669 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (529)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q 328 (529)
||.+++|+. +.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|
T Consensus 223 Vp~~~~l~~-------~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q 282 (386)
T cd01151 223 VPEENLLPG-------AEGLR------GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGR-------PLAAFQ 282 (386)
T ss_pred eCHHHcCCc-------cccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCC-------chhhhH
Confidence 999999973 22332 3455677889999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcC
Q 009669 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (529)
Q Consensus 329 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~ 408 (529)
.+|++|++|.+.+++++.+++++++.+++ +. .....++++|.++++.+.++++.++|+|||+||+.++
T Consensus 283 ~vq~~la~~~~~~eaar~l~~~a~~~~d~-------~~-----~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 350 (386)
T cd01151 283 LVQKKLADMLTEIALGLLACLRVGRLKDQ-------GK-----ATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEY 350 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC
Confidence 99999999999999999999998876652 11 1123468899999999999999999999999999999
Q ss_pred CHHHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009669 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (529)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (529)
+++++|||++...+++|++++++..+++.+++
T Consensus 351 ~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 351 HIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999875
No 15
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.1e-50 Score=423.65 Aligned_cols=352 Identities=23% Similarity=0.297 Sum_probs=297.0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC---------
Q 009669 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD--------- 94 (529)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~--------- 94 (529)
+||.++++.+++|+.+.-.. . ...++....+..++|+.+.+.|| |+++||.+.++.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~-~--------~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la 71 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVAP-F--------HHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELA 71 (372)
T ss_pred ChHHHHHHHHHHHHHHhCch-h--------HHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH
Confidence 47889999999999875310 0 11122222244568999999998 6788887644321
Q ss_pred ---Ccc-hhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 009669 95 ---EPA-FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (529)
Q Consensus 95 ---~~~-~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~ 170 (529)
.+. .+.+|..++...+..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +++|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~----- 144 (372)
T cd01160 72 RAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLN----- 144 (372)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEe-----
Confidence 121 23456556777888999999999999999999999999999999999999999999998 7899999
Q ss_pred ceeeccCCCCCCCcEEEEEEEEecC-CCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceec
Q 009669 171 SSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (529)
Q Consensus 171 G~K~~v~~l~~~A~~~lV~Ar~~~~-g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (529)
|+|+|+++ +..||+++|+|++..+ +.+.++++|+|| .+.|||++.+.|+++| +++++++.|.|+||+|
T Consensus 145 G~k~~vs~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~V 213 (372)
T cd01160 145 GSKTFITN-GMLADVVIVVARTGGEARGAGGISLFLVE-------RGTPGFSRGRKLKKMG---WKAQDTAELFFDDCRV 213 (372)
T ss_pred eEEEEecC-CCccCEEEEEEEeCCCCCCCCceEEEEEe-------CCCCCeecCCcccccc---CCCCCeEEEEecceEc
Confidence 99999999 8999999999998654 234688999999 7789999999999999 9999999999999999
Q ss_pred CcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHH
Q 009669 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (529)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~ 329 (529)
|.+++|+. ++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q~ 274 (372)
T cd01160 214 PAENLLGE------ENKGFY------YLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGK-------TLAQLQV 274 (372)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHH
Confidence 99999984 444332 4456677889999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCC
Q 009669 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (529)
Q Consensus 330 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (529)
+|++|++|.+.+++++.+++.+++.+++ +.. ....++++|+++++.+.++++.++|+|||+||+++++
T Consensus 275 vq~~la~~~~~~~~a~~~~~~aa~~~~~-------~~~-----~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~ 342 (372)
T cd01160 275 VRHKIAELATKVAVTRAFLDNCAWRHEQ-------GRL-----DVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYP 342 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCC-----chHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCH
Confidence 9999999999999999999988765541 111 1345778999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccHHHHHHHHHHHH
Q 009669 410 LPELFAVYVPACTYEGDNIVLLLQVARFL 438 (529)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 438 (529)
++++|||++...+++|++++++.+|++.+
T Consensus 343 l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 343 IARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999875
No 16
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.8e-50 Score=423.03 Aligned_cols=358 Identities=18% Similarity=0.151 Sum_probs=296.1
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC-------
Q 009669 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (529)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (529)
-++||.++++++++|++++..-+. ....+....+..++|+.+.+.|| |+++||.+.++..
T Consensus 5 ~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~ 76 (380)
T PRK03354 5 LNDEQELFVAGIRELMASENWEAY--------FAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWME 76 (380)
T ss_pred CCHHHHHHHHHHHHHHHhccCChh--------HHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHH
Confidence 457899999999999997632111 01122222244678999999998 5788887654421
Q ss_pred -----CcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009669 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (529)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~ 169 (529)
.+.++..+.......|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|+.+ +++|+||
T Consensus 77 la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~ln---- 150 (380)
T PRK03354 77 LGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLN---- 150 (380)
T ss_pred HHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEe----
Confidence 13222222222356788899999999999999999999999999999999999999999987 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceec
Q 009669 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (529)
Q Consensus 170 ~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (529)
|+|+|+++ +..||+++|+|++..+.+..++..|+|| .+.|||++. .|+++| +++++++.|.|+||+|
T Consensus 151 -G~K~fis~-~~~ad~~~v~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~V 217 (380)
T PRK03354 151 -GSKCFITS-SAYTPYIVVMARDGASPDKPVYTEWFVD-------MSKPGIKVT-KLEKLG---LRMDSCCEITFDDVEL 217 (380)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceeEEEEE-------CCCCceEec-cccccC---CCCCCeEEEEEccEEe
Confidence 99999999 8999999999997533333567889999 778999997 579999 9999999999999999
Q ss_pred CcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHH
Q 009669 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (529)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~ 329 (529)
|.+++++. +|.++. .....+...|+.+++.++|+++++++++++|+++|+|||+ ||+++|.
T Consensus 218 p~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~ 278 (380)
T PRK03354 218 DEKDMFGR------EGNGFN------RVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGE-------AIGRFQL 278 (380)
T ss_pred cHHHcCCC------CChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHHhHH
Confidence 99999984 454432 3334566788999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCC
Q 009669 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (529)
Q Consensus 330 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (529)
+|++|++|.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 279 vq~~la~~~~~~~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 346 (380)
T PRK03354 279 IQEKFAHMAIKLNSMKNMLYEAAWKADN-------GT-----ITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHR 346 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCh
Confidence 9999999999999999999998765541 11 11234678999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccHHHHHHHHHHHHHHHH
Q 009669 410 LPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (529)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 442 (529)
++++|||++...+++|++++++..+++.+++.|
T Consensus 347 l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 347 ISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQY 379 (380)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998765
No 17
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.7e-50 Score=423.03 Aligned_cols=355 Identities=21% Similarity=0.295 Sum_probs=295.8
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC--------
Q 009669 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (529)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (529)
++||.++++++++|+.+...... ..++....+..++|+.+.+.|| |+++||.+.++.+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~---------~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l 72 (378)
T cd01157 2 TEQQKEFQETARKFAREEIIPVA---------AEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEEL 72 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcccch---------HHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999988643111 1111111234578999999998 5888887654322
Q ss_pred ----Ccchhhhh-hhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009669 95 ----EPAFTDLH-WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (529)
Q Consensus 95 ----~~~~~~~~-~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~ 169 (529)
.+.++.++ ..+....+..+|+++||++|||++.+|++++++++|||++|||+.++.|+|+++ +++|+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~---- 146 (378)
T cd01157 73 AYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN---- 146 (378)
T ss_pred HhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEe----
Confidence 12222222 123444566789999999999999999999999999999999999999999987 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEecCCC---CcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecc
Q 009669 170 TSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (529)
Q Consensus 170 ~G~K~~v~~l~~~A~~~lV~Ar~~~~g~---~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~ 246 (529)
|+|+|+++ +..||+++|+|+++.++. ..++.+|+|| ...|||++.+.|.++| +++++++.+.|+|
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~s~~~~~~~ 214 (378)
T cd01157 147 -GQKMWITN-GGKANWYFLLARSDPDPKCPASKAFTGFIVE-------ADTPGIQPGRKELNMG---QRCSDTRGITFED 214 (378)
T ss_pred -eEEEeecC-CccCCEEEEEEEeCCcccCCCCCceEEEEEc-------CCCCCeeccCcccccC---CCCCCceEEEecc
Confidence 99999999 899999999999864321 3578899999 7789999999999999 9999999999999
Q ss_pred eecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccc
Q 009669 247 VRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 326 (529)
Q Consensus 247 vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~ 326 (529)
|+||.+++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 215 v~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~-------~i~~ 275 (378)
T cd01157 215 VRVPKENVLIG------EGAGFK------IAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGK-------LIAE 275 (378)
T ss_pred EEECHHHcCCC------CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-------cHHH
Confidence 99999999984 454443 4455667789999999999999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccC
Q 009669 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (529)
Q Consensus 327 ~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~ 406 (529)
||.+||+|++|.+.+++++.+++.+++.++. +. .....++++|+++++.+.++++.|+|+|||+||++
T Consensus 276 ~q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 343 (378)
T cd01157 276 HQAVSFMLADMAMKVELARLAYQRAAWEVDS-------GR-----RNTYYASIAKAFAADIANQLATDAVQIFGGNGFNS 343 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 9999999999999999999999998776541 11 12335678999999999999999999999999999
Q ss_pred cCCHHHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009669 407 SSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (529)
Q Consensus 407 ~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (529)
+++++++|||++...+++|++++++..+++.++.
T Consensus 344 ~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 344 EYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred CCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998864
No 18
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.3e-50 Score=425.06 Aligned_cols=365 Identities=22% Similarity=0.286 Sum_probs=301.5
Q ss_pred CCCHHHHHHH-Hc--CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHh
Q 009669 15 QFDVDEMKIV-WA--GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEAS 87 (529)
Q Consensus 15 ~f~~~~m~~~-~~--~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~~----~~~gg 87 (529)
-|.+.-|++. ++ -++||.++++.+++|+.++..... .+. .....+..++|+.+.++||. +++||
T Consensus 14 ~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~--------~~~-~~~~~~p~~~~~~l~~~G~~~~~v~~~GG 84 (412)
T PLN02526 14 IFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIM--------TEY-WEKAEFPFHIIPKLGSLGIAGGTIKGYGC 84 (412)
T ss_pred CCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccch--------HHH-HHhCCCCHHHHHHHHHCCCCcCcccccCC
Confidence 3555554433 33 358899999999999987532110 011 11122345789999999985 45677
Q ss_pred HhhhhcC------------Cc--chhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEE
Q 009669 88 MLRSSVD------------EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTA 153 (529)
Q Consensus 88 ~~~~~~~------------~~--~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtA 153 (529)
.+.++.+ .+ ..+.+|..++...|..+|+++|+++|||++++|+.++|+++|||++|||+.++.|+|
T Consensus 85 ~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a 164 (412)
T PLN02526 85 PGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTA 164 (412)
T ss_pred CCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEE
Confidence 6544321 12 123456556666789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccc
Q 009669 154 TFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGA 233 (529)
Q Consensus 154 t~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~ 233 (529)
+++ +++|+|| |+|+||++ +..||+++|+|++..+ .++++|+|| ...|||++.+.|.++|
T Consensus 165 ~~~--~gg~~ln-----G~K~~vs~-~~~Ad~~lv~a~~~~~---~~~~~flV~-------~~~~Gv~~~~~~~~~G--- 223 (412)
T PLN02526 165 TKV--EGGWILN-----GQKRWIGN-STFADVLVIFARNTTT---NQINGFIVK-------KGAPGLKATKIENKIG--- 223 (412)
T ss_pred EEE--CCEEEEE-----EEEeeecC-CCccCEEEEEEEeCCC---CCeEEEEEc-------CCCCCeEcCCCCCccC---
Confidence 998 7899999 99999999 8999999999997532 468899999 7789999999999999
Q ss_pred cCCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceec
Q 009669 234 YNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 313 (529)
Q Consensus 234 ~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qF 313 (529)
+++++++.|.|+||+||++++|+. .+ .+. .....+...|+.+++.++|+++++++.+++|+++|+||
T Consensus 224 ~r~t~s~~v~f~~v~Vp~~~~l~~------~~-~~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~f 290 (412)
T PLN02526 224 LRMVQNGDIVLKDVFVPDEDRLPG------VN-SFQ------DTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 290 (412)
T ss_pred cCCCCeeEEEEeeEEECHHHhCCC------cc-cHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeC
Confidence 999999999999999999999973 21 111 33456778999999999999999999999999999999
Q ss_pred CCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHH
Q 009669 314 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIE 393 (529)
Q Consensus 314 g~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~ 393 (529)
|+ ||++||.+||+|++|.+.+++++.+++++++.+++ +.. ....++++|+++++.+.++++
T Consensus 291 g~-------~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~-------~~~-----~~~~~~~aK~~a~~~a~~v~~ 351 (412)
T PLN02526 291 GA-------PLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYES-------GKM-----TPGHASLGKAWITKKARETVA 351 (412)
T ss_pred CC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCC-----ChHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999998876652 111 123477899999999999999
Q ss_pred HHHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009669 394 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (529)
Q Consensus 394 ~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (529)
.|+|+|||+||+++++++++|||++..++++|+++++++.+++.+++.
T Consensus 352 ~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 352 LGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999764
No 19
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-50 Score=420.63 Aligned_cols=356 Identities=17% Similarity=0.152 Sum_probs=296.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC-------
Q 009669 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (529)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~------- 94 (529)
-++||.+++++++.|+.+.-..+ .....+....+..++|+.+.+.|| |+++||.+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~ 76 (381)
T PRK12341 5 LTEEQELLLASIRELITRNFPEE--------YFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEE 76 (381)
T ss_pred CCHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHH
Confidence 35788999999999998752110 111122222244578999999997 6788887654321
Q ss_pred -----CcchhhhhhhchHHHHhcCCCHHHHHhHhHHh-hccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009669 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLA-YKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (529)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i-~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~ 168 (529)
.+. ..++..+....|..+|+++||++|||++ .+|+.++|+++|||++|||+..++|+|+++ +++|+||
T Consensus 77 la~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~ln--- 150 (381)
T PRK12341 77 VSKCGAPA-FLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLN--- 150 (381)
T ss_pred HhhcChhH-HHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEE---
Confidence 122 2233345566788899999999999998 599999999999999999999999999987 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEecCCC-CcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecce
Q 009669 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (529)
Q Consensus 169 ~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~-~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~v 247 (529)
|+|+|++| +..||+++|+|++..++. ..++.+|+|| .+.|||++. .|+++| +++++++.|.|+||
T Consensus 151 --G~K~~is~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~-------~~~~gv~~~-~~~~~G---~~~~~~~~v~~~~v 216 (381)
T PRK12341 151 --GQKTFITG-AKEYPYMLVLARDPQPKDPKKAFTLWWVD-------SSKPGIKIN-PLHKIG---WHMLSTCEVYLDNV 216 (381)
T ss_pred --eEEEEEcC-CccCCEEEEEEEcCCCCCCCCceEEEEEe-------CCCCceeec-cccccc---CCCCCceEEEECcE
Confidence 99999999 899999999999764432 3578999999 778999995 589999 99999999999999
Q ss_pred ecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccch
Q 009669 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (529)
Q Consensus 248 rVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~ 327 (529)
+||.+++|+. +|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+|
T Consensus 217 ~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~ 277 (381)
T PRK12341 217 EVEESDLVGE------EGMGFL------NVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGK-------PIGHN 277 (381)
T ss_pred EecHHHcCCC------CChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-------cHHHh
Confidence 9999999984 444432 3345677889999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCc
Q 009669 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (529)
Q Consensus 328 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~ 407 (529)
|.+|++|+++.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.++|+|||+||.++
T Consensus 278 ~~v~~~la~~~~~~~aar~~~~~a~~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~ 345 (381)
T PRK12341 278 QLIQEKLTLMAIKIENMRNMVYKVAWQADN-------GQ-----SLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDE 345 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 999999999999999999999988765542 11 123457889999999999999999999999999999
Q ss_pred CCHHHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009669 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (529)
Q Consensus 408 ~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (529)
++++++|||++...+++|++++++.++++.+++.
T Consensus 346 ~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 346 ARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred CHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999865
No 20
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=7.6e-50 Score=417.85 Aligned_cols=355 Identities=21% Similarity=0.267 Sum_probs=299.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC--------
Q 009669 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (529)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (529)
++|+.++++++++|+.++..... ...+........+|+.+.+.|| |+++||.+.+..+
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l 73 (376)
T cd01156 3 DDEIEMLRQSVREFAQKEIAPLA---------AKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEI 73 (376)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHH
Confidence 46888999999999987532110 1111111234568999999998 5788886544321
Q ss_pred ----Ccch--hhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 009669 95 ----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (529)
Q Consensus 95 ----~~~~--~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~ 168 (529)
.+.+ +..|..++...|..+|+++|+++|+|++.+|+.++++++|||++|||+..+.|+|+++ +++|+||
T Consensus 74 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~--- 148 (376)
T cd01156 74 SRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLN--- 148 (376)
T ss_pred hccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEE---
Confidence 1222 3345555666789999999999999999999999999999999999999999999988 7899999
Q ss_pred CCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEeccee
Q 009669 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (529)
Q Consensus 169 ~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (529)
|+|+|+++ +..||+++|+|++..++...++.+|+|| ...|||++.+.|+++| +++++++.|.|+||+
T Consensus 149 --G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~ 215 (376)
T cd01156 149 --GSKMWITN-GPDADTLVVYAKTDPSAGAHGITAFIVE-------KGMPGFSRAQKLDKLG---MRGSNTCELVFEDCE 215 (376)
T ss_pred --EEEEEecC-CCcCCEEEEEEEeCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---CCCCCceEEEeCceE
Confidence 99999999 8999999999997654444678999999 7789999999999999 999999999999999
Q ss_pred cCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchH
Q 009669 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (529)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q 328 (529)
||++++|+. .+.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||
T Consensus 216 Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~ 276 (376)
T cd01156 216 VPEENILGG------ENKGVY------VLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQ-------PIGEFQ 276 (376)
T ss_pred ecHHHcCCC------CCchHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCc-------chHHhH
Confidence 999999984 444433 4556777899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcC
Q 009669 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (529)
Q Consensus 329 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~ 408 (529)
.+|++|++|.+.+++++++++.+++.+++ +. . ....++.+|+++++.+.++++.++|+|||+||++++
T Consensus 277 ~v~~~la~~~~~l~aar~~~~~aa~~~d~-------~~-~----~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 344 (376)
T cd01156 277 LVQGKLADMYTRLNASRSYLYTVAKACDR-------GN-M----DPKDAAGVILYAAEKATQVALDAIQILGGNGYINDY 344 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 99999999999999999999998876642 11 1 123466789999999999999999999999999999
Q ss_pred CHHHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009669 409 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (529)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (529)
+++++|||++...+++|++++++..+++.++|
T Consensus 345 ~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 345 PTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998864
No 21
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=9.4e-50 Score=420.82 Aligned_cols=359 Identities=20% Similarity=0.265 Sum_probs=299.3
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhc--------
Q 009669 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV-------- 93 (529)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~-------- 93 (529)
-+++|.++++.+++|+.+....... ..+++..+ .....+|+.+.+.|| |+++||.+.+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~a~---~~d~~~~~----p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~ 98 (404)
T PLN02519 26 FDDTQLQFKESVQQFAQENIAPHAA---AIDATNSF----PKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEE 98 (404)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchH---HHHhcCCC----CchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHH
Confidence 3468899999999999875321110 00111111 112237999999998 578887764432
Q ss_pred ----CCcch--hhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 009669 94 ----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (529)
Q Consensus 94 ----~~~~~--~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp 167 (529)
+.+.+ +.+|..++...|..+|+++||++|||.+.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 99 la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~ln-- 174 (404)
T PLN02519 99 ISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERV--DGGYVLN-- 174 (404)
T ss_pred HhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEe--CCEEEEE--
Confidence 11222 3456556667888999999999999999999999999999999999999999999988 7899999
Q ss_pred CCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecce
Q 009669 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (529)
Q Consensus 168 ~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~v 247 (529)
|+|+|+++ +..||+++|+|+++.++.+.|+.+|+|| ...|||++.+.|+++| +++++++.|.|+||
T Consensus 175 ---G~K~~vs~-a~~ad~~~v~a~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~G---~rgt~s~~v~f~~v 240 (404)
T PLN02519 175 ---GNKMWCTN-GPVAQTLVVYAKTDVAAGSKGITAFIIE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFENC 240 (404)
T ss_pred ---eEEEeecC-CCcCCEEEEEEEeCCCCCCCeeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEEeCeE
Confidence 99999999 8999999999998654445688999999 7789999999999999 99999999999999
Q ss_pred ecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccch
Q 009669 248 RIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (529)
Q Consensus 248 rVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~ 327 (529)
+||.+++++. .+.++. .....+...|+.+++.++|+++++++.+++|+++|.|||+ ||.++
T Consensus 241 ~Vp~~~~lg~------~~~G~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------pl~~~ 301 (404)
T PLN02519 241 FVPEENVLGQ------EGKGVY------VMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGR-------PIGEF 301 (404)
T ss_pred EecHHHcCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc-------cHHHh
Confidence 9999999984 444332 3445677889999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCc
Q 009669 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 407 (529)
Q Consensus 328 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~ 407 (529)
|.+|++|++|.+.+++++.+++.+++.+++ +. . .....+.+|+++++.+.++++.++|+|||+||+++
T Consensus 302 ~~v~~~la~~~~~l~aar~~~~~aa~~~~~-------~~-~----~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~ 369 (404)
T PLN02519 302 QFIQGKLADMYTSLQSSRSYVYSVARDCDN-------GK-V----DRKDCAGVILCAAERATQVALQAIQCLGGNGYINE 369 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----cHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCC
Confidence 999999999999999999999998876642 11 1 12346678999999999999999999999999999
Q ss_pred CCHHHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009669 408 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (529)
Q Consensus 408 ~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (529)
++++++|||++...+++|++++++..+++.+++.
T Consensus 370 ~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 370 YPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred ChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998864
No 22
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=6.9e-50 Score=422.63 Aligned_cols=358 Identities=20% Similarity=0.235 Sum_probs=299.0
Q ss_pred HHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC-
Q 009669 21 MKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD- 94 (529)
Q Consensus 21 m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~- 94 (529)
|+.+ .-+++|.++++.+++|+.+...... ...+....+..++|+.+.+.|| |+++||.+.+...
T Consensus 32 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~ 101 (410)
T PTZ00461 32 MDLY-NPTPEHAALRETVAKFSREVVDKHA---------REDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAA 101 (410)
T ss_pred cccC-CCCHHHHHHHHHHHHHHHHhCCccH---------HHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHH
Confidence 5433 4557899999999999987532111 1111112344678999999998 5788876644321
Q ss_pred -----------C--cchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCe
Q 009669 95 -----------E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161 (529)
Q Consensus 95 -----------~--~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~ 161 (529)
. +.++..|..++...+..+|+++||++|||.+.+|+.++|+++|||++|||+.++.|+|+++. +++
T Consensus 102 ~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~-~gg 180 (410)
T PTZ00461 102 VIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS-NGN 180 (410)
T ss_pred HHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcC-CCe
Confidence 1 12334455456677888999999999999999999999999999999999999999999872 247
Q ss_pred EEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcce
Q 009669 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (529)
Q Consensus 162 ~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~ 241 (529)
|+|| |+|+||+| +..||+++|+|+++ .++.+|+|| .+.|||++.+.|+++| +++++++.
T Consensus 181 ~~L~-----G~K~~vs~-a~~Ad~~lv~a~~~-----~~~~~flVp-------~~~~Gv~v~~~~~~~G---~r~~~~~~ 239 (410)
T PTZ00461 181 YVLN-----GSKIWITN-GTVADVFLIYAKVD-----GKITAFVVE-------RGTKGFTQGPKIDKCG---MRASHMCQ 239 (410)
T ss_pred EEEE-----eEEEeECC-CccCCEEEEEEEeC-----CceEEEEEe-------CCCCCeecCCCCcccC---CCCCceEE
Confidence 9999 99999999 89999999999863 247899999 7789999999999999 99999999
Q ss_pred EEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCc
Q 009669 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 321 (529)
Q Consensus 242 v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e 321 (529)
|.|+||+||.+++|+. +|.++. .....+...|+.+++.++|+++++++++++|+++|+|||+
T Consensus 240 l~f~~v~Vp~~~~lg~------~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~------ 301 (410)
T PTZ00461 240 LFFEDVVVPAENLLGE------EGKGMV------GMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGK------ 301 (410)
T ss_pred EEEcceecCHHHhCCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCc------
Confidence 9999999999999985 454443 4456677899999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009669 322 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (529)
Q Consensus 322 ~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG 401 (529)
||++||.+|++|+++.+.+++++.+++.+++.++. +. .....++++|+++++.+.++++.++|+|||
T Consensus 302 -~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg 368 (410)
T PTZ00461 302 -PISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHP-------GN-----KNRLGSDAAKLFATPIAKKVADSAIQVMGG 368 (410)
T ss_pred -CHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988765531 11 122456789999999999999999999999
Q ss_pred ccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHH
Q 009669 402 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 441 (529)
Q Consensus 402 ~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~ 441 (529)
+||+++++++++|||++...+++|++++++..+++.+++.
T Consensus 369 ~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 369 MGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred cccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998764
No 23
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=1.6e-49 Score=414.89 Aligned_cols=350 Identities=20% Similarity=0.190 Sum_probs=290.7
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC--------
Q 009669 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (529)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (529)
++||.++++++++|+.+...... ...+....+..++|+.+.+.|| |+++||.+.+..+
T Consensus 2 t~~~~~l~~~~~~~~~~~~~p~~---------~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~l 72 (372)
T TIGR03207 2 NEDLQALADTARRFARERIAPGF---------KERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQI 72 (372)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHH
Confidence 36888999999999987542111 0111112244678999999998 5788887655321
Q ss_pred ----Ccchhhh-hhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009669 95 ----EPAFTDL-HWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (529)
Q Consensus 95 ----~~~~~~~-~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~ 169 (529)
.+.++.. ...++...+..+|+++|+++|||++.+|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 73 a~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~ln---- 146 (372)
T TIGR03207 73 ARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLN---- 146 (372)
T ss_pred HhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEE----
Confidence 1222221 1234556788899999999999999999999999999999999999999999988 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEecCC-CCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEeccee
Q 009669 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (529)
Q Consensus 170 ~G~K~~v~~l~~~A~~~lV~Ar~~~~g-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (529)
|+|+||++ +..||+++|+|++..++ ...++.+|+|| .+.|||++. .|+++| +++++++.|.|+||+
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~ 213 (372)
T TIGR03207 147 -GEKTSISA-ADQADAAVVFARTGSEAEGARGISAFLVP-------MDLPGITRN-RFDCHG---QRAIGRGSIFFENVR 213 (372)
T ss_pred -EEEEEEcC-CCcCCEEEEEEEcCCCCCCCCceEEEEEc-------CCCCCeecC-cchhcc---CCCCCeeEEEECcee
Confidence 99999999 89999999999975432 23578899999 778999985 588999 999999999999999
Q ss_pred cCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchH
Q 009669 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (529)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q 328 (529)
||.+++|+. ++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||
T Consensus 214 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~-------~i~~~q 274 (372)
T TIGR03207 214 VPADHMLGN------EGQGFV------QVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGK-------PLSAFQ 274 (372)
T ss_pred ccHHHcCCC------CChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhhH
Confidence 999999984 444433 3445678899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcC
Q 009669 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 408 (529)
Q Consensus 329 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~ 408 (529)
.+||+|++|.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.|+|+|||.||+++
T Consensus 275 ~v~~~la~~~~~~~~ar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~- 341 (372)
T TIGR03207 275 GVSHPLADAETQVEAARLLCLQTLWLKDH-------GL-----PHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG- 341 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-
Confidence 99999999999999999999998776541 11 112347889999999999999999999999999999
Q ss_pred CHHHHhhhhcccccccccHHHHHHHHHHH
Q 009669 409 GLPELFAVYVPACTYEGDNIVLLLQVARF 437 (529)
Q Consensus 409 ~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ 437 (529)
+++++|||++...+++|++++|+..|++.
T Consensus 342 ~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 342 DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999863
No 24
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=2.4e-49 Score=437.61 Aligned_cols=366 Identities=18% Similarity=0.182 Sum_probs=290.1
Q ss_pred cCCCCHHHHHHHHc--CChhhHHHHHH-HHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHH
Q 009669 13 KAQFDVDEMKIVWA--GSRHAFQVSDR-IARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEE 84 (529)
Q Consensus 13 ~~~f~~~~m~~~~~--~~~e~~~lr~~-~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~ 84 (529)
.-.+|++++-.+=. -++|+.++++. +++++..-..+.. .+ .......++|+.+.++|| |++
T Consensus 63 ~G~~~~~~l~~~p~~~Ls~ee~~~~d~~v~~l~~~~~~~~~--------~~---~~~~~P~e~w~~L~e~G~~gl~IPee 131 (777)
T PRK09463 63 SGKPDWKKLLNYPKPTLTAEEQAFLDGPVEELCRMVNDWQI--------TH---ELADLPPEVWQFIKEHGFFGMIIPKE 131 (777)
T ss_pred CCCCChHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--------hc---cccCCCHHHHHHHHHCCCCcCCCchh
Confidence 45667777632212 25677788886 6666542111000 00 001133568999999998 588
Q ss_pred HHhHhhhhcC------------Cc--chhhhhhhchH-HHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCC
Q 009669 85 EASMLRSSVD------------EP--AFTDLHWGMFV-PAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGL 149 (529)
Q Consensus 85 ~gg~~~~~~~------------~~--~~~~~~~~l~~-~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~ 149 (529)
+||.+.+... .+ ..+.+|..+.. ..|..+||+|||++|||++++|+.++||++|||++|||+.++
T Consensus 132 yGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i 211 (777)
T PRK09463 132 YGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSI 211 (777)
T ss_pred hCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccc
Confidence 8887654321 11 11234544543 478899999999999999999999999999999999999999
Q ss_pred ceEEEE---eCCCC---eEEEecCCCCceeeccCCCCCCCcEEEEEEEE-ecC-----CCCcceEEEEEEeccCCCCCCC
Q 009669 150 ETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD-----GQDHGVNGFIVQLRSLEDHSPL 217 (529)
Q Consensus 150 ~TtAt~---d~~~~---~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~-~~~-----g~~~g~~~flV~~rd~~~~~~~ 217 (529)
.|+++. +.+|+ +|+|| |+|+||++ +..||+++|++++ +++ +++.|+++|||| .+.
T Consensus 212 ~Tta~~~~a~~dGd~~~g~vLN-----G~K~~IT~-a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp-------~d~ 278 (777)
T PRK09463 212 PDTGVVCKGEWQGEEVLGMRLT-----WNKRYITL-APIATVLGLAFKLYDPDGLLGDKEDLGITCALIP-------TDT 278 (777)
T ss_pred cccceeeeeeecCCcccceEEE-----EEEEeeCC-CCccCEEEEEEEecCcccccCCCCCCceEEEEEE-------CCC
Confidence 876542 12255 59999 99999999 8999999999986 322 235789999999 788
Q ss_pred CCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHH-HHhHHHHHHHH
Q 009669 218 PGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVR-QTIVADASCAL 296 (529)
Q Consensus 218 pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r-~~~aa~~~G~~ 296 (529)
|||++++.+.++| ++ ..++.+.|+||+||.+++||.. ...|.++. .+...+..+| +.+++.++|++
T Consensus 279 pGV~ig~~~~~lG---~r-~~~g~v~fddV~VP~d~lLG~~---~~~G~G~~------~l~~~L~~gR~i~laA~avG~a 345 (777)
T PRK09463 279 PGVEIGRRHFPLN---VP-FQNGPTRGKDVFIPLDYIIGGP---KMAGQGWR------MLMECLSVGRGISLPSNSTGGA 345 (777)
T ss_pred CCeEecccccccC---cc-cccceEEeeeeecCHHHhcccc---cccChHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 87 5689999999999999999841 01355554 6678889999 89999999999
Q ss_pred HHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 009669 297 SRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHAC 376 (529)
Q Consensus 297 ~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (529)
+++++.+++|+++|+|||+ ||++||.+||+|++|.+.+|+++++.+.+++.++. +. .....
T Consensus 346 r~al~~Av~YA~~R~QFG~-------pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~-------G~-----~~~~~ 406 (777)
T PRK09463 346 KLAALATGAYARIRRQFKL-------PIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDL-------GE-----KPSVL 406 (777)
T ss_pred HHHHHHHHHHHHHHHHcCC-------ChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHH
Confidence 9999999999999999999 99999999999999999999998888777655531 11 12456
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhccccccCc--CCHHHHhhhhcccccccccHHHHHHHH
Q 009669 377 TAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLLLQV 434 (529)
Q Consensus 377 as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~--~~l~~~~rd~~~~~~~eG~~~vl~~~i 434 (529)
++++|+++++.+.+++++|+|+|||+||+.+ ++++++|||++...|+||+|++++..+
T Consensus 407 aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 407 SAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 8899999999999999999999999999997 899999999999999999999999876
No 25
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=3e-49 Score=415.58 Aligned_cols=358 Identities=16% Similarity=0.164 Sum_probs=285.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhc--------
Q 009669 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV-------- 93 (529)
Q Consensus 27 ~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~-------- 93 (529)
-++||.++++++++|+.++....... ...+ ...++. .....+|+.+.++|| |+++||.+.++.
T Consensus 4 lteeq~~l~~~~r~f~~~~~~~~~~~-~~~~-~~~~~~--~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~ee 79 (395)
T TIGR03204 4 FSKEEQAFRDEVRSFFKDNVPADTRQ-KLVE-GRHLTK--DEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEE 79 (395)
T ss_pred CCHHHHHHHHHHHHHHHHhCChhhhh-hhhc-cCCCCh--HHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHH
Confidence 45799999999999998765321110 0000 000000 111368999999998 578888765442
Q ss_pred ----CCcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009669 94 ----DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (529)
Q Consensus 94 ----~~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~ 169 (529)
..+.|+..+..+....|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|+++ +++|+||
T Consensus 80 lg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~--g~~~~Ln---- 153 (395)
T TIGR03204 80 LQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKK--GDKWIIN---- 153 (395)
T ss_pred HHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEc--CCEEEEe----
Confidence 124454434335556788899999999999999999999999999999999999999999987 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEecCC-CCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEeccee
Q 009669 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (529)
Q Consensus 170 ~G~K~~v~~l~~~A~~~lV~Ar~~~~g-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vr 248 (529)
|+|+||++ +..||+++|+|+++.++ +..|+++|+|| .+.|||++.+...+.| +.+++.|.|+||+
T Consensus 154 -G~K~~vt~-a~~Ad~~lv~a~~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~~-----~~~~~~v~f~~v~ 219 (395)
T TIGR03204 154 -GQKTWTTL-AQHADWIFCLCRTDPTAKKQMGISFILVD-------MKSKGITVRPIQTIDG-----GVEVNEVFFDDVE 219 (395)
T ss_pred -eEEEeecC-CccCCeEEEEEEeCCCCCCCCCeEEEEEe-------CCCCCeEecChhhccC-----CCceeEEEEcceE
Confidence 99999999 89999999999975332 34678999999 7789999987655432 5678999999999
Q ss_pred cCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchH
Q 009669 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 328 (529)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q 328 (529)
||.+++|+. .+.++. .....+...|+.+++ +|.++++++.+++|+++|+|||+ ||++||
T Consensus 220 Vp~~~~lg~------~~~g~~------~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~-------~i~~~q 278 (395)
T TIGR03204 220 VPYENLVGE------ENKGWD------YAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGK-------PVIEDA 278 (395)
T ss_pred EcHHHcCCC------CCchHH------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC-------ccccCH
Confidence 999999984 344443 555667778888765 79999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHH----------
Q 009669 329 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL---------- 398 (529)
Q Consensus 329 ~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~---------- 398 (529)
.+||+|++|.+.+++++.++++++..... .+.. .....++++|.++++.+.+++++|+|+
T Consensus 279 ~vq~~la~~~~~~~aar~l~~~aa~~~~~------~~~~----~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~ 348 (395)
T TIGR03204 279 KFREKLAAVEIELKALELTQLRVVADEGK------HGKG----KPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDV 348 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCC----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 99999999999999999999998632210 0111 112458899999999999999999985
Q ss_pred hccccccCc----CCHHHHhhhhcccccccccHHHHHHHHHHHHH
Q 009669 399 CGGHGYLCS----SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (529)
Q Consensus 399 ~GG~Gy~~~----~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (529)
|||+||+.+ +++.++|||.+...+++|++++++..|++.+|
T Consensus 349 ~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l 393 (395)
T TIGR03204 349 HGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVL 393 (395)
T ss_pred cccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHc
Confidence 889999955 57999999999999999999999999999876
No 26
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-48 Score=430.53 Aligned_cols=333 Identities=20% Similarity=0.191 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHcCC-----CHHHHhHhhhhcCC--------------cchhhhhhhch-HHHHhcCCCHHHHHhHhHHhh
Q 009669 68 KAAYAWKRIIELRL-----SEEEASMLRSSVDE--------------PAFTDLHWGMF-VPAIKGQGTDEQHQKWLPLAY 127 (529)
Q Consensus 68 ~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~--------------~~~~~~~~~l~-~~~i~~~gt~eq~~~~L~~i~ 127 (529)
+..++|+.+.++|| |+++||.+.+.... +..+.+|..+. +..|..+||+|||++|||+++
T Consensus 109 ~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LA 188 (774)
T PRK13026 109 LPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLA 188 (774)
T ss_pred CCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHh
Confidence 34568999999998 58888876543211 11233444444 357889999999999999999
Q ss_pred ccceeeeeecCCCCCCCCCCCCceEEEE---eCCCC---eEEEecCCCCceeeccCCCCCCCcEEEEEEEE-ecC-----
Q 009669 128 KMEIIGCYAQTELGHGSNVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD----- 195 (529)
Q Consensus 128 ~g~~~~~~a~tE~~~Gsd~~~~~TtAt~---d~~~~---~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~-~~~----- 195 (529)
+|+.++|||+|||++|||+.++.|+|+. +.+|+ +|+|| |+|+||++ |..||+++|++++ +++
T Consensus 189 sGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLN-----G~K~~IT~-A~~Ad~~~v~ar~~dpd~~~g~ 262 (774)
T PRK13026 189 DGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLT-----WDKRYITL-APVATVLGLAFKLRDPDGLLGD 262 (774)
T ss_pred CCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEE-----EEEEeecC-ccccCEEEEEEEeeCccccccC
Confidence 9999999999999999999999987653 12366 69999 99999999 9999999888875 332
Q ss_pred CCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCchhh
Q 009669 196 GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQ 275 (529)
Q Consensus 196 g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~ 275 (529)
+++.|+++|+|| .+.|||++++.+.++| +++. ++.+.||||+||.+++||.. ...|.++.
T Consensus 263 ~~~~GiT~fLVp-------~d~pGV~ig~~~~~lG---~~~~-~g~v~fdDV~VP~d~lLG~~---~~~G~G~~------ 322 (774)
T PRK13026 263 KKELGITCALIP-------TDHPGVEIGRRHNPLG---MAFM-NGTTRGKDVFIPLDWIIGGP---DYAGRGWR------ 322 (774)
T ss_pred CCCCceEEEEEE-------CCCCCeEeeccccccc---cCcc-cceEEEeeeEccHHHhcCCc---ccCChHHH------
Confidence 235789999999 7889999999999999 8764 68999999999999999851 01366665
Q ss_pred HHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHH---HHHHHHHHHHHH
Q 009669 276 LLYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA---SAYAFRFVGEWL 351 (529)
Q Consensus 276 ~~~~~l~~~r-~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a---~~~a~~~~~~~~ 351 (529)
.+...+..+| +.+++.++|+++.+++.+++|+++|+|||+ ||++||.+||+|++|.+ .+++++.+++.+
T Consensus 323 ~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~-------pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a 395 (774)
T PRK13026 323 MLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM-------PIGQFEGVQEALARIAGNTYLLEAARRLTTTG 395 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999 899999999999999999999999999999 99999999999999998 567777776654
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCc--CCHHHHhhhhcccccccccHHH
Q 009669 352 KWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIV 429 (529)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~--~~l~~~~rd~~~~~~~eG~~~v 429 (529)
. + .+. .....++++|+++++.+.+++++|+|+|||.||+++ ++++++|||++...+++|+|++
T Consensus 396 ~---D-------~G~-----~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei 460 (774)
T PRK13026 396 L---D-------LGV-----KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANIL 460 (774)
T ss_pred H---H-------CCC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHH
Confidence 2 1 111 123568999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHHH---------HHHHHHHHHhcCC
Q 009669 430 LLLQVA---------RFLMKTVSQLGYG 448 (529)
Q Consensus 430 l~~~ia---------~~ll~~~~~~~~~ 448 (529)
++..+- -++++++..++..
T Consensus 461 ~R~l~ifgqga~rchp~~~~e~~a~~~~ 488 (774)
T PRK13026 461 TRNLMIFGQGATRCHPYVLAEMEAAAME 488 (774)
T ss_pred HHHHHHhhccHhhCCchHHHHHHHhhCC
Confidence 997442 2677777766544
No 27
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=6.7e-48 Score=405.58 Aligned_cols=360 Identities=19% Similarity=0.230 Sum_probs=290.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcccCCCHH---H--HHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcCC-----
Q 009669 31 AFQVSDRIARLVASDPAFRKDNRAMLSRK---E--LFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (529)
Q Consensus 31 ~~~lr~~~~~~l~~~~~~~~~~~~~~~r~---~--~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~~----- 95 (529)
..++++++++|++++..... . .+++. + ....+......+|+.+.++|| |+++||.+.++.+.
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e 79 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAE-Q--EFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAE 79 (394)
T ss_pred HHHHHHHHHHHHHHhcCccH-H--HHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHH
Confidence 35789999999987632111 0 01100 0 000001233578999999998 57888876543221
Q ss_pred --------cchhhhhh--hchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCC-CCCCCCCCceEEEEeCCCCeEEE
Q 009669 96 --------PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVI 164 (529)
Q Consensus 96 --------~~~~~~~~--~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~-~Gsd~~~~~TtAt~d~~~~~~vL 164 (529)
+.++..+. ......|..+|+++|+++|||++.+|+.++|+++|||+ .|||+..+.|+|+++ +++|+|
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~L 157 (394)
T cd01155 80 ETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVI 157 (394)
T ss_pred HHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEE
Confidence 12222221 12335788999999999999999999999999999997 579999999999998 789999
Q ss_pred ecCCCCceeeccCCCCCC--CcEEEEEEEEecCC--CCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCC--CC
Q 009669 165 HSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT--MD 238 (529)
Q Consensus 165 ntp~~~G~K~~v~~l~~~--A~~~lV~Ar~~~~g--~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~--~~ 238 (529)
| |+|+|+++ +.+ ||+++|+|++..++ ++.++.+|+|| ...|||++.+.|+++| +++ ++
T Consensus 158 n-----G~k~~vs~-~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp-------~~~~Gv~i~~~~~~~G---~r~~~t~ 221 (394)
T cd01155 158 N-----GRKWWSSG-AGDPRCKIAIVMGRTDPDGAPRHRQQSMILVP-------MDTPGVTIIRPLSVFG---YDDAPHG 221 (394)
T ss_pred E-----EEEEEEcC-CCCCCCCEEEEEEEeCCCcCCCCCceEEEEEe-------CCCCCeEeeccccccC---CCCCCCC
Confidence 9 99999998 644 78999999986432 23578999999 7789999999999999 997 56
Q ss_pred cceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCC
Q 009669 239 NGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG 318 (529)
Q Consensus 239 ~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~ 318 (529)
++.|.|+||+||.+++|+. ++.++. .....+...|+..++.++|+++++++.+++|+++|+|||+
T Consensus 222 s~~v~f~dv~Vp~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~--- 286 (394)
T cd01155 222 HAEITFDNVRVPASNLILG------EGRGFE------IAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGK--- 286 (394)
T ss_pred eeEEEEccEEecHHHcCCC------CChHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC---
Confidence 7899999999999999984 444433 4556677889999999999999999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009669 319 GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL 398 (529)
Q Consensus 319 ~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~ 398 (529)
||+++|.+|++|++|.+.+++++++++.+++.+++. .. .+....++++|+++++.+.++++.|+|+
T Consensus 287 ----~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~-------~~---~~~~~~~~~aK~~~~~~a~~~~~~a~~~ 352 (394)
T cd01155 287 ----KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTV-------GN---KAARKEIAMIKVAAPRMALKIIDRAIQV 352 (394)
T ss_pred ----cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CC---cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988766421 10 1234567899999999999999999999
Q ss_pred hccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009669 399 CGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (529)
Q Consensus 399 ~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (529)
|||+||+++++++++|||++...+++|++++++..+++.++|
T Consensus 353 ~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 353 HGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred hcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998853
No 28
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=8.5e-48 Score=401.86 Aligned_cols=354 Identities=25% Similarity=0.311 Sum_probs=297.0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhc----------
Q 009669 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (529)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~---------- 93 (529)
+||.++++.+++|+.+...... ...+.........|+.+.+.|| |+++||.+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~ 71 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLA---------AEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELA 71 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccch---------HHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHH
Confidence 3678999999999976432111 0111111234568999999987 577777654332
Q ss_pred --CCcc--hhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009669 94 --DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (529)
Q Consensus 94 --~~~~--~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~ 169 (529)
+.+. .+.+|..++...+..+|+++|+++|++++.+|+.++++++|||++||++..+.|+|+++ +++|+||
T Consensus 72 ~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~---- 145 (373)
T cd01158 72 KVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLN---- 145 (373)
T ss_pred hhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEe----
Confidence 1122 33456556667888999999999999999999999999999999999999999999998 7899999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceec
Q 009669 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (529)
Q Consensus 170 ~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (529)
|+|+|+++ +..||+++|+|++..+++..++.+|+|| ...|||++.+.|+++| +++++++.|.|+||+|
T Consensus 146 -G~k~~vsg-~~~ad~~lv~a~~~~~~~~~~~~~~lvp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~~~~v~V 213 (373)
T cd01158 146 -GSKMWITN-GGEADFYIVFAVTDPSKGYRGITAFIVE-------RDTPGLSVGKKEDKLG---IRGSSTTELIFEDVRV 213 (373)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---cCCCCceEEEeCcEEe
Confidence 99999999 8999999999997544344678999999 7789999999999999 9999999999999999
Q ss_pred CcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHH
Q 009669 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (529)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~ 329 (529)
|.+++|+. .+.++. .....+..+|+.+++.++|+++++++++++|+++|+|||. |+.+||.
T Consensus 214 p~~~~lg~------~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~-------~~~~~~~ 274 (373)
T cd01158 214 PKENILGE------EGEGFK------IAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGK-------PIADFQG 274 (373)
T ss_pred cHHHcCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------cHHHhHH
Confidence 99999984 343332 3455677789999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCC
Q 009669 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (529)
Q Consensus 330 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (529)
+|++++++.+.+++++.+++.+++.++. +. +....++.+|+++++.+.++++.++++|||.||+++++
T Consensus 275 v~~~la~~~~~l~aa~~~~~~aa~~~~~-------~~-----~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~ 342 (373)
T cd01158 275 IQFKLADMATEIEAARLLTYKAARLKDN-------GE-----PFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYP 342 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCCh
Confidence 9999999999999999999988776541 11 22345788999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009669 410 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (529)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (529)
++++|||++...+++|++++++.++++.+||
T Consensus 343 l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 343 VERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999875
No 29
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=9.2e-48 Score=420.56 Aligned_cols=340 Identities=19% Similarity=0.181 Sum_probs=275.8
Q ss_pred HHHHHHHHcCC-----CHHHHhHhhhhcC----------Ccchhhhh--h-hchHHHHhcCCCHHHHHhHhHHhhcccee
Q 009669 71 YAWKRIIELRL-----SEEEASMLRSSVD----------EPAFTDLH--W-GMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (529)
Q Consensus 71 ~~~~~l~~~g~-----~~~~gg~~~~~~~----------~~~~~~~~--~-~l~~~~i~~~gt~eq~~~~L~~i~~g~~~ 132 (529)
++|+.+.+.|| |+++||.+.+... ...++.++ . .....+|..+|+++||++|||++.+|+++
T Consensus 103 e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~ 182 (622)
T PTZ00456 103 EAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWS 182 (622)
T ss_pred HHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCChh
Confidence 58999999998 4778876544321 01122211 1 12345788999999999999999999999
Q ss_pred eeeecCCCCCCCCCCCCceEEEEeCCCC-eEEEecCCCCceeeccCCCCCCC----cEEEEEEEEecC-CCCcceEEEEE
Q 009669 133 GCYAQTELGHGSNVQGLETTATFDPQTD-EFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITD-GQDHGVNGFIV 206 (529)
Q Consensus 133 ~~~a~tE~~~Gsd~~~~~TtAt~d~~~~-~~vLntp~~~G~K~~v~~l~~~A----~~~lV~Ar~~~~-g~~~g~~~flV 206 (529)
+|+++|||++|||+..++|+|+++ +| +|+|| |+|+||++ |.++ ++.+|+||+..+ .+..|+++|+|
T Consensus 183 ~t~alTEp~aGSD~~~l~T~A~~~--gdG~y~L~-----G~K~fIt~-g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlV 254 (622)
T PTZ00456 183 GTMCLTEPQCGTDLGQVKTKAEPS--ADGSYKIT-----GTKIFISA-GDHDLTENIVHIVLARLPNSLPTTKGLSLFLV 254 (622)
T ss_pred hhhhccCCccCCCcccCeeEEEEC--CCCcEEEe-----eEEEEecC-CchhhccCcEEEEEEEecCCCCCCCceEEEEE
Confidence 999999999999999999999987 55 69999 99999998 7663 577999998653 34578999999
Q ss_pred EeccCCC---CCCCCCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHH
Q 009669 207 QLRSLED---HSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVY 283 (529)
Q Consensus 207 ~~rd~~~---~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~ 283 (529)
|...++. ....+||++..+.+|+| +++++++.|.|+| |.+++||. ++.++. .++..|..
T Consensus 255 p~~~~~~~G~~~~~~gv~~~~~~~kmG---~~gs~t~~l~fd~---~~~~llG~------~~~Gl~------~~~~~mn~ 316 (622)
T PTZ00456 255 PRHVVKPDGSLETAKNVKCIGLEKKMG---IKGSSTCQLSFEN---SVGYLIGE------PNAGMK------QMFTFMNT 316 (622)
T ss_pred eCCCCCcCCCccCCCCeeecCcccccC---CCCCceEEEEeeC---hhHhhcCC------CChHHH------HHHHHHHH
Confidence 9653211 12347899999999999 9999999999999 46889984 555554 67788889
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCC-----CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009669 284 VRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG-----GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDV 358 (529)
Q Consensus 284 ~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~-----~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~ 358 (529)
+|+.+++.++|+++++++.+++|+++|+||+...+ ....||+++|.+|++|++|.+.+++++.+++++++.++..
T Consensus 317 aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~ 396 (622)
T PTZ00456 317 ARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIH 396 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999854321 2345999999999999999999999999999998877642
Q ss_pred HHHhhcCCCCC----hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHH-HH
Q 009669 359 TQRLQANDFST----LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL-LQ 433 (529)
Q Consensus 359 ~~~~~~~~~~~----~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~-~~ 433 (529)
... .+... .......++++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|+|+++. ..
T Consensus 397 ~~~---~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dl 473 (622)
T PTZ00456 397 AAA---KDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDF 473 (622)
T ss_pred ccc---cchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHH
Confidence 100 01000 01234578899999999999999999999999999999999999999999999999999997 58
Q ss_pred HHHHHH
Q 009669 434 VARFLM 439 (529)
Q Consensus 434 ia~~ll 439 (529)
++|.++
T Consensus 474 i~rkll 479 (622)
T PTZ00456 474 IGRKVL 479 (622)
T ss_pred HHHHhh
Confidence 888887
No 30
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-48 Score=367.85 Aligned_cols=353 Identities=22% Similarity=0.271 Sum_probs=295.9
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCH----HHHhHh-----hhh------
Q 009669 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----EEASML-----RSS------ 92 (529)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~~~----~~gg~~-----~~~------ 92 (529)
++|+..+|+++|.++++.-.... ....|.+ .++.++...++.+|+.. -||=.+ .++
T Consensus 56 T~dE~air~~~Reycq~~l~Prv---tea~r~e------~F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEve 126 (432)
T KOG0138|consen 56 TEDEIAIRDTFREYCQERLMPRV---TEANRNE------VFDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREVE 126 (432)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHH---HHHhhhc------cCChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHHH
Confidence 46788999999999986532111 1111222 24456667777777631 111111 111
Q ss_pred -cC--CcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 009669 93 -VD--EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (529)
Q Consensus 93 -~~--~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~ 169 (529)
++ ....+.+|..+.+.+|..+|+++||++|||.+++|+.++||++|||.||||+.+++|+|+||..+..|.||
T Consensus 127 RVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklN---- 202 (432)
T KOG0138|consen 127 RVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLN---- 202 (432)
T ss_pred HhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEEC----
Confidence 11 13457889999999999999999999999999999999999999999999999999999999877789999
Q ss_pred CceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceec
Q 009669 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (529)
Q Consensus 170 ~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (529)
|+|.||+| .+.||++||+||...++ .+.-|||+ ++++|++...+..|++ ++.+.+|.|.+|+|+|
T Consensus 203 -GsKtWI~n-sp~aDl~vvwAr~~t~n---~I~GFi~~-------k~~~GL~apkI~gK~s---LRas~tG~Ilmd~V~V 267 (432)
T KOG0138|consen 203 -GSKTWITN-SPMADLFVVWARCETDN---KIRGFILE-------KGMRGLSAPKIEGKFS---LRASATGMILMDGVEV 267 (432)
T ss_pred -CeeeeecC-CcccceEEEEEecccCC---ceeeEEEe-------cCCCCCcCCCcCCeee---eeecccCceeecCCcC
Confidence 99999999 89999999999987554 47789999 8999999999999999 9999999999999999
Q ss_pred CcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHH
Q 009669 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (529)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~ 329 (529)
|++++|.. -..+. -.++.++..|..++...+|++..+++++.+|+..|+|||+ |++.+|.
T Consensus 268 PeE~~LPg-------~~s~q------gpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~-------PLAanQL 327 (432)
T KOG0138|consen 268 PEENLLPG-------ASSLQ------GPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGR-------PLAANQL 327 (432)
T ss_pred ChhhcCCC-------ccccC------CchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCC-------chhHHHH
Confidence 99999952 22222 2357788899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCC
Q 009669 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 409 (529)
Q Consensus 330 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~ 409 (529)
+|.+|++|+..+.+.-.+++++..++++.. .....++..|.+.+-.+.++++.++++.||.|.+.++-
T Consensus 328 ~Q~Kladmltei~lgl~~clrl~rLkd~g~------------~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyh 395 (432)
T KOG0138|consen 328 IQKKLADMLTEITLGLQACLRLGRLKDQGK------------ATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYH 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccc------------CChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHH
Confidence 999999999999999999999888776321 12234788999999999999999999999999999999
Q ss_pred HHHHhhhhcccccccccHHHHHHHHHHHHHH
Q 009669 410 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (529)
Q Consensus 410 l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (529)
+-+++-+....-||||+-+++...++|.+-+
T Consensus 396 v~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 396 VIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred HHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 9999999999999999999999999998754
No 31
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2.8e-47 Score=400.85 Aligned_cols=359 Identities=27% Similarity=0.341 Sum_probs=293.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhc----------
Q 009669 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (529)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~---------- 93 (529)
+++.++++.+++|+.++..... ....+.. . ......++|+.+.+.|| |+++||.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~--~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 7 EEQEALRAEVREFAEEELAPEA---AEIDRRI-E--DERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCcch---hhhhhhc-c--cccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 5678899999999987653111 0001100 0 01112467788888886 678877433221
Q ss_pred --CCc--chhhhhh---hchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCc-eEEEEeCCCCeEEEe
Q 009669 94 --DEP--AFTDLHW---GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLE-TTATFDPQTDEFVIH 165 (529)
Q Consensus 94 --~~~--~~~~~~~---~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~-TtAt~d~~~~~~vLn 165 (529)
+.+ ..+.++. ......+..+|+++|+++|||++.+|+.++|+++|||++|||+.++. |+|+.+ +++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~--~g~~~ln 158 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRD--DGDYVLN 158 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEec--CCCEEEE
Confidence 111 1222222 13344677899999999999999999999999999999999999998 666664 3449999
Q ss_pred cCCCCceeeccCCCCCCCcEEEEEEEEecC-CCCcceEEEEEEeccCCCCCC-CCCeEEcccCCcccccccCCCCcceEE
Q 009669 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSP-LPGITIGDIGMKFGNGAYNTMDNGVLR 243 (529)
Q Consensus 166 tp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~-g~~~g~~~flV~~rd~~~~~~-~pGv~i~~~~~k~G~~~~~~~~~~~v~ 243 (529)
|+|+|||+ +..||+++|+|+++.+ .+++|+++|+|| .+ .|||++.+++.+.| ++++++++|.
T Consensus 159 -----G~K~~is~-~~~ad~~~v~Ar~~~~~~~~~gis~flV~-------~~~~~Gv~~~~~~~~~G---~r~~~~~~v~ 222 (393)
T COG1960 159 -----GQKIWISN-APVADWLLVLARTDPAPGKHKGISLFLVP-------KDLTPGVSVGPILKKMG---LRGSATGEVF 222 (393)
T ss_pred -----eEEEEEcC-CCCCCEEEEEEEcCCcccccCceEEEEEe-------CCCCCCeeeccccCcCC---cCCCCeeEEE
Confidence 99999999 8999999999998765 456799999999 67 59999999876547 9999999999
Q ss_pred ecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCccc
Q 009669 244 FEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQ 323 (529)
Q Consensus 244 fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~ 323 (529)
|+||+||.+++|| +.|.++. .....+..+|+.+++.++|.+++|++.+++|+++|+|||+ |
T Consensus 223 f~~v~vp~~~lig------~~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~ 283 (393)
T COG1960 223 FDDVRVPAENLLG------EEGDGFK------IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGR-------P 283 (393)
T ss_pred ECCeeccHHHcCC------cCCchHH------HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC-------c
Confidence 9999999999998 3566655 6678889999999999999999999999999999999997 9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 009669 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (529)
Q Consensus 324 i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~G 403 (529)
|++||.+|++|++|.+.+++++.+++++++..+.. . .....++++|.++++.+.++++.++|+|||+|
T Consensus 284 i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~-------~-----~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g 351 (393)
T COG1960 284 IADFQLVQFKLADMAAELEAARLLVLRAAELADAG-------D-----DAGAEAAMAKLFATEAALEVADEAVQVHGGYG 351 (393)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999877665421 1 12267899999999999999999999999999
Q ss_pred ccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHHHHH
Q 009669 404 YLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 442 (529)
Q Consensus 404 y~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~ 442 (529)
|+.+++++++|||++...+++|++++++..+++.+++..
T Consensus 352 ~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 352 YTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred cccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999998764
No 32
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=3e-46 Score=424.97 Aligned_cols=289 Identities=19% Similarity=0.262 Sum_probs=256.7
Q ss_pred hHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCC--CC
Q 009669 106 FVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG--KV 182 (529)
Q Consensus 106 ~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~-~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~--~~ 182 (529)
.+.+|..+|+++||++|||++++|++++|+++|||+ +|||+.++.|+|+++ +++|+|| |+|+||++ + ..
T Consensus 525 ~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~--g~g~vLn-----G~K~~vtg-a~~~~ 596 (822)
T PLN02876 525 NMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQ--GDSYVIN-----GTKWWTSG-AMDPR 596 (822)
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEc--CCEEEEE-----eEEEEecC-CCCCC
Confidence 345788999999999999999999999999999997 689999999999988 8899999 99999998 6 47
Q ss_pred CcEEEEEEEEecCC-CCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCC--CcceEEecceecCccccccccc
Q 009669 183 STHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMRVS 259 (529)
Q Consensus 183 A~~~lV~Ar~~~~g-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~--~~~~v~fd~vrVP~~~lL~~~~ 259 (529)
||+++|+|++..++ ...++.+|+|| .+.|||++.+.+.++| +++. .++.|.|+||+||.+++|+.
T Consensus 597 ad~~lv~ar~~~~~~~~~~~s~flV~-------~~~pGv~i~~~~~~~G---~r~~~~~~~~v~fd~V~Vp~~~~lg~-- 664 (822)
T PLN02876 597 CRVLIVMGKTDFNAPKHKQQSMILVD-------IQTPGVQIKRPLLVFG---FDDAPHGHAEISFENVRVPAKNILLG-- 664 (822)
T ss_pred CCEEEEEEecCCCCCCCCcceEEEEe-------CCCCCceeecccceec---cCCCCCCeeEEEEcceeechhheecC--
Confidence 99999999975432 23568899999 7789999999999999 9874 57899999999999999974
Q ss_pred ccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHH
Q 009669 260 QVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA 339 (529)
Q Consensus 260 ~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a 339 (529)
.|.++. .+...+..+|+.+++.++|++++|++.+++|+++|+|||+ ||++||.+||+|++|.+
T Consensus 665 ----~g~g~~------~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~ 727 (822)
T PLN02876 665 ----EGRGFE------IAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGK-------LIAQHGSFLSDLAKCRV 727 (822)
T ss_pred ----CCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------chhhCHHHHHHHHHHHH
Confidence 444443 4566777899999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcc
Q 009669 340 SAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVP 419 (529)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~ 419 (529)
.+++++++++.+++.+++. +. .+....++++|+++++.+.+++++|+|+|||+||+++++++++|||++.
T Consensus 728 ~leaar~l~~~aa~~~d~~------~~----~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~ 797 (822)
T PLN02876 728 ELEQTRLLVLEAADQLDRL------GN----KKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATART 797 (822)
T ss_pred HHHHHHHHHHHHHHHHHcc------CC----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhh
Confidence 9999999999998776521 10 1234568899999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHH
Q 009669 420 ACTYEGDNIVLLLQVARFLMKT 441 (529)
Q Consensus 420 ~~~~eG~~~vl~~~ia~~ll~~ 441 (529)
..+++|++++++..+++.+++.
T Consensus 798 ~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 798 LRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred cccccChHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 33
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-47 Score=389.61 Aligned_cols=324 Identities=25% Similarity=0.318 Sum_probs=286.7
Q ss_pred HHHHHHHHHcCC-----CHHHHhHhhhhc------------CC--cchhhhhhhchHHHHhcCCCHHHHHhHhHHhhccc
Q 009669 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (529)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~------------~~--~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~ 130 (529)
...|+.+.++|+ +++++|.+...- +. ++.+..|..+....|..+||++||++|||.+++|+
T Consensus 112 ~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~ 191 (634)
T KOG0137|consen 112 ETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGK 191 (634)
T ss_pred hhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCC
Confidence 345667777775 566666553321 11 23345566667778999999999999999999999
Q ss_pred eeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCC----CcceEEEEE
Q 009669 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQ----DHGVNGFIV 206 (529)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~----~~g~~~flV 206 (529)
.+++||+|||..|||+.++.|+|+..+|++.|+|| |.|.||+| +..||+++|||++..++. .+++++|||
T Consensus 192 ~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn-~g~Adif~VfAqt~~~~~~g~~k~k~T~Flv 265 (634)
T KOG0137|consen 192 LIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISN-GGLADIFTVFAQTEVDPADGEVKRKITAFLV 265 (634)
T ss_pred ccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEec-CccceeeeeeeccccCCCCccccCceEEEEE
Confidence 99999999999999999999999999999999999 99999999 899999999999875442 378999999
Q ss_pred EeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHH
Q 009669 207 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQ 286 (529)
Q Consensus 207 ~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~ 286 (529)
+ ++..||+-++...||| .++++.++|.|++|.||.+|+||. +|.+++ .....+..+|+
T Consensus 266 e-------r~~~Gvt~G~~e~k~G---iKgsnt~~v~f~~~ki~~envlG~------~G~G~k------va~nilnsgR~ 323 (634)
T KOG0137|consen 266 E-------RDFGGVTNGPPEKKMG---IKGSNTAEVHFEGVKIPIENVLGK------PGDGFK------VAMNILNSGRF 323 (634)
T ss_pred e-------ccccCccCCCchhhhc---ccccceeeeeeccccccHHHhcCC------CCcchH------HHHHHHccCCc
Confidence 9 7789999999999999 999999999999999999999994 788876 77788889999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009669 287 TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 366 (529)
Q Consensus 287 ~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (529)
.+++..+|.+++++..+.+|+..|.|||. ++.+|-.+|.+++.|...+|+++++.|..+..+|+
T Consensus 324 ~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~-------~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~--------- 387 (634)
T KOG0137|consen 324 GMAAALLGLMKRIIEEAADYATNRTQFGK-------KLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDE--------- 387 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcceecCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc---------
Confidence 99999999999999999999999999999 99999999999999999999999999987665542
Q ss_pred CCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHH
Q 009669 367 FSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFL 438 (529)
Q Consensus 367 ~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~l 438 (529)
....+.+.++++.|.++++.++.++++++|++||+||+.+.++++.+||++.++|+||+|++++.-||..-
T Consensus 388 -~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg 458 (634)
T KOG0137|consen 388 -VGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTG 458 (634)
T ss_pred -ccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHH
Confidence 12357788899999999999999999999999999999999999999999999999999999999998643
No 34
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.7e-45 Score=377.48 Aligned_cols=326 Identities=27% Similarity=0.363 Sum_probs=281.1
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhHhhhhcCCcchhhhhhhchHH
Q 009669 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVP 108 (529)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~~~~~gg~~~~~~~~~~~~~~~~~l~~~ 108 (529)
++|.++++.+++|+.++...... . ........|+.+.++||. +++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~g~~----------------------~~~~ 46 (327)
T cd00567 1 EEQRELRDSAREFAAEELEPYAR--------E----RRETPEEPWELLAELGLL----------------------LGAA 46 (327)
T ss_pred ChHHHHHHHHHHHHHHhccccHH--------h----HHhhCCCCHHHHHHHHHH----------------------hchH
Confidence 36788999999999876432110 0 011223457778777765 5667
Q ss_pred HHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEE
Q 009669 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV 188 (529)
Q Consensus 109 ~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV 188 (529)
+|..+|+++|+++||+.+.+|++++|+++|||++|||+..+.|+|+++ +++|+|| |+|+|+++ +..||+++|
T Consensus 47 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~ad~~lv 118 (327)
T cd00567 47 LLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKD--GDGYVLN-----GRKIFISN-GGDADLFIV 118 (327)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEEEecC-CccCCEEEE
Confidence 788899999999999999999999999999999999999999999988 7899999 99999999 899999999
Q ss_pred EEEEecCC-CCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCce
Q 009669 189 YARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKY 267 (529)
Q Consensus 189 ~Ar~~~~g-~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~ 267 (529)
+|++..++ +..++.+|+|| ...|||++.+.|.++| +++++++.+.|+||+||.+++|+. .+.+
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp-------~~~~Gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~l~~------~~~g 182 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVP-------ADTPGVTVGRIWDKMG---MRGSGTGELVFDDVRVPEDNLLGE------EGGG 182 (327)
T ss_pred EEEeCCCCCCCCceEEEEEe-------CCCCCeEecccccccc---CCCCceEEEEECCEEecHHHcCCC------CCch
Confidence 99986533 34578899999 6779999999999999 999999999999999999999984 3333
Q ss_pred eccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Q 009669 268 VQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFV 347 (529)
Q Consensus 268 ~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~ 347 (529)
.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||.+|++|+++.+.+++++.+
T Consensus 183 ~~------~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~-------~~~~~~~vq~~la~~~~~~~~~~~~ 249 (327)
T cd00567 183 FE------LAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK-------PLAEFQAVQFKLADMAAELEAARLL 249 (327)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------ccccchHHHHHHHHHHHHHHHHHHH
Confidence 32 4556677899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccH
Q 009669 348 GEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN 427 (529)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~ 427 (529)
++.+++.+++ .. .+....++.+|+++++.+.++++.|+++|||+||+++++++++|||++...+++|++
T Consensus 250 ~~~a~~~~~~-------~~----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~ 318 (327)
T cd00567 250 LYRAAWLLDQ-------GP----DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTA 318 (327)
T ss_pred HHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHH
Confidence 9988876642 11 124566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 009669 428 IVLLLQVAR 436 (529)
Q Consensus 428 ~vl~~~ia~ 436 (529)
++++.++++
T Consensus 319 ~~~~~~~~~ 327 (327)
T cd00567 319 EIQRLIIAR 327 (327)
T ss_pred HHHHHHhcC
Confidence 999988764
No 35
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=2.9e-45 Score=387.81 Aligned_cols=302 Identities=22% Similarity=0.245 Sum_probs=258.9
Q ss_pred chhhhhhhchHHHHhcCCCHHHHHhHhHHhhccc----eeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCce
Q 009669 97 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME----IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172 (529)
Q Consensus 97 ~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~----~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~ 172 (529)
.|+.+|. +++.+|..+|+++|+ +|||++.+|+ +++|+++|||++|||+.+++|+|+++. +|+|+|| |+
T Consensus 111 ~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G~ 182 (418)
T cd01154 111 CPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----GH 182 (418)
T ss_pred CcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----EE
Confidence 4454554 578899999998865 6999999997 899999999999999999999999874 6789999 99
Q ss_pred eeccCCCCCCCcEEEEEEEEecC-CCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCc
Q 009669 173 KWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPR 251 (529)
Q Consensus 173 K~~v~~l~~~A~~~lV~Ar~~~~-g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~ 251 (529)
|+|+++ + .||+++|+|+++.+ +++.|+++|+||.+.++ ...|||+|.++++++| ++++++++|.|+|| +
T Consensus 183 K~f~s~-a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~--~~~~Gv~i~~~~~~~G---~r~~~~~ev~f~dv---~ 252 (418)
T cd01154 183 KWFASA-P-LADAALVLARPEGAPAGARGLSLFLVPRLLED--GTRNGYRIRRLKDKLG---TRSVATGEVEFDDA---E 252 (418)
T ss_pred EEEecC-c-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCC--CCCCCeEecccccccC---CCCCCeEEEEecCc---C
Confidence 999999 7 99999999998753 34579999999954322 1236999999999999 99999999999998 3
Q ss_pred ccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHH
Q 009669 252 NQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 331 (529)
Q Consensus 252 ~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q 331 (529)
+++||. .|.++. .+...+...|+.+++.++|.++++++.+++|+++|+|||+ ||+++|.+|
T Consensus 253 ~~~lG~------~g~G~~------~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~l~~~~~v~ 313 (418)
T cd01154 253 AYLIGD------EGKGIY------YILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGK-------PLIDHPLMR 313 (418)
T ss_pred ccccCC------CCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC-------chhhhHHHH
Confidence 788884 566654 5667888999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHH
Q 009669 332 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 411 (529)
Q Consensus 332 ~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~ 411 (529)
++|+++.+.+++++.+++++++.++... .+...........++++|+++++.+.+++++|+|+|||+||+.+++++
T Consensus 314 ~~La~~~~~~eaar~l~~~aa~~~~~~~----~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~ 389 (418)
T cd01154 314 RDLAEMEVDVEAATALTFRAARAFDRAA----ADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVA 389 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHH
Confidence 9999999999999999999987765310 000000001234578899999999999999999999999999999999
Q ss_pred HHhhhhcccccccccHHHHHHHHHHHHH
Q 009669 412 ELFAVYVPACTYEGDNIVLLLQVARFLM 439 (529)
Q Consensus 412 ~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (529)
++|||+++..+++|++++++..++|.|.
T Consensus 390 r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 390 RLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999874
No 36
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.2e-45 Score=386.58 Aligned_cols=352 Identities=19% Similarity=0.190 Sum_probs=279.4
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhc----------
Q 009669 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (529)
Q Consensus 29 ~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~---------- 93 (529)
+||.++++.+++|+.++....... .... + ..........+|+.+.+.|| |+++||.+.+..
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~ 76 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELRE-ESAL--G-YREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMA 76 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccc-cccc--c-ccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHH
Confidence 367899999999999875422211 0000 0 00011123456788888887 578887654432
Q ss_pred --CCcchhh-hhhhchHHHHhcCCCHHHHHhHhHHhhccceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 009669 94 --DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (529)
Q Consensus 94 --~~~~~~~-~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~ 170 (529)
+.+.++. .+..++...|..+|+++|+++||+++.+|+.++|+++|||++|||+..+.|+|+++ +++|+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~----- 149 (380)
T cd01152 77 AAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVN----- 149 (380)
T ss_pred hcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEe-----
Confidence 2233332 22234566789999999999999999999999999999999999999999999987 7899999
Q ss_pred ceeeccCCCCCCCcEEEEEEEEecCCC-CcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceec
Q 009669 171 SSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (529)
Q Consensus 171 G~K~~v~~l~~~A~~~lV~Ar~~~~g~-~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrV 249 (529)
|.|+||++ +..||+++|+|++..++. ..++.+|+|| ...|||++.+.+.++| +++++.+.|+||+|
T Consensus 150 G~K~~it~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~g-----~~~~~~l~f~~v~V 216 (380)
T cd01152 150 GQKIWTSG-AHYADWAWLLVRTDPEAPKHRGISILLVD-------MDSPGVTVRPIRSING-----GEFFNEVFLDDVRV 216 (380)
T ss_pred cEEEEEcC-ccccCEEEEEEEeCCCccCcCCeEEEEEe-------CCCCceEeeehhhccC-----CCCcceEEecCcCc
Confidence 99999999 899999999999764332 3578999999 7789999999988766 45789999999999
Q ss_pred CcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHH
Q 009669 250 PRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 329 (529)
Q Consensus 250 P~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~ 329 (529)
|.+++|+. .|.++. .+...+...|+.+++.+ ..+++.+++|+++|.|||+ ||.+||.
T Consensus 217 p~~~~lg~------~~~g~~------~~~~~l~~~r~~~~~~~----~~~~~~a~~~a~~r~~~g~-------~l~~~~~ 273 (380)
T cd01152 217 PDANRVGE------VNDGWK------VAMTTLNFERVSIGGSA----ATFFELLLARLLLLTRDGR-------PLIDDPL 273 (380)
T ss_pred chhcccCC------CCchHH------HHHHHHHhcccccchhh----hHHHHHHHHHHHHHHhcCC-------CcccCHH
Confidence 99999984 454443 44455666777655444 4455567789999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCc--
Q 009669 330 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS-- 407 (529)
Q Consensus 330 ~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~-- 407 (529)
+|++|++|.+.+++++.+++.+++.+++ +. .....++++|+++++.+.++++.++|+|||.||+.+
T Consensus 274 vq~~la~~~~~l~~a~~l~~~aa~~~~~-------~~-----~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~ 341 (380)
T cd01152 274 VRQRLARLEAEAEALRLLVFRLASALAA-------GK-----PPGAEASIAKLFGSELAQELAELALELLGTAALLRDPA 341 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC-----CCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 9999999999999999999999887652 11 112346889999999999999999999999999988
Q ss_pred ------CCHHHHhhhhcccccccccHHHHHHHHHHHHH
Q 009669 408 ------SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (529)
Q Consensus 408 ------~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (529)
+++++++||++...+++|++++++..+++.++
T Consensus 342 ~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~ 379 (380)
T cd01152 342 PGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLL 379 (380)
T ss_pred cccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999876
No 37
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.4e-44 Score=381.79 Aligned_cols=337 Identities=20% Similarity=0.214 Sum_probs=267.7
Q ss_pred HHHHHHHHHcCC-----CHHHHhHhhhhc------------CCcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhcccee
Q 009669 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (529)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~------------~~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~ 132 (529)
.++|+.|.+.|| |+++||.+.++. +.+.++..........|..+|+++|+++|+|++.+|+.+
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~ 118 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWT 118 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCee
Confidence 467899999987 567777654332 112222121223455688889999999999999999999
Q ss_pred eeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCC----cEEEEEEEEecCC-CCcceEEEEEE
Q 009669 133 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITDG-QDHGVNGFIVQ 207 (529)
Q Consensus 133 ~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A----~~~lV~Ar~~~~g-~~~g~~~flV~ 207 (529)
+|+++|||++|||+..+.|+|++++ +++|+|| |+|+|+++ +.+| ++++|+|++..++ +..++++|+||
T Consensus 119 ~~~a~tEp~~gsd~~~~~t~a~~~~-~ggy~l~-----G~K~~is~-~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp 191 (407)
T cd01153 119 GTMCLTEPDAGSDLGALRTKAVYQA-DGSWRIN-----GVKRFISA-GEHDMSENIVHLVLARSEGAPPGVKGLSLFLVP 191 (407)
T ss_pred EEEEecCCCCCCCcccceEEEEECC-CCcEEEe-----eEEEEEeC-CCcccccccEEEEEEeCCCCCCCCCceEEEEEe
Confidence 9999999999999999999999873 3579999 99999998 7776 5788999875322 23578999999
Q ss_pred eccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHH
Q 009669 208 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 287 (529)
Q Consensus 208 ~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~ 287 (529)
.+.++ ...|||++.+.|+++| +++++++.|.|+||+|| +|+. +|.++. .....+...|+.
T Consensus 192 ~~~~~--~~~~gv~i~~~~~~~G---~r~t~s~~v~f~~v~Vp---~lg~------~~~g~~------~~~~~l~~~r~~ 251 (407)
T cd01153 192 KFLDD--GERNGVTVARIEEKMG---LHGSPTCELVFDNAKGE---LIGE------EGMGLA------QMFAMMNGARLG 251 (407)
T ss_pred ccCcC--CCCCCeEeccchhccC---CCCCCeEEEEEcCEEEe---eeCC------CCccHH------HHHHHHHHHHHH
Confidence 43211 1138999999999999 99999999999999999 7763 455443 456778889999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcceecCCCCC-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009669 288 IVADASCALSRAVCIATRYSAVRRQFGSKNG-GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND 366 (529)
Q Consensus 288 ~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~-~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (529)
+++.++|+++++++.+++|+++|+|||++.. -+..++.++|.+|++|++|.+.+++++.+++++++.+++.... .+
T Consensus 252 ~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~---~~ 328 (407)
T cd01153 252 VGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERK---AT 328 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---cc
Confidence 9999999999999999999999999998311 1222389999999999999999999999999998877642100 00
Q ss_pred CCC-----hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHHH-HHHH
Q 009669 367 FST-----LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLL-QVAR 436 (529)
Q Consensus 367 ~~~-----~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~-~ia~ 436 (529)
... .......++++|+++++.+.++++.++++|||+||+++++++++|||++...+++|++++++. .+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~ 404 (407)
T cd01153 329 EGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR 404 (407)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhc
Confidence 000 001245578899999999999999999999999999999999999999999999999998887 5544
No 38
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=8e-45 Score=389.32 Aligned_cols=290 Identities=20% Similarity=0.191 Sum_probs=251.8
Q ss_pred chHHHHhcCCCHHHHHhHhHHhhccc-------------eeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCc
Q 009669 105 MFVPAIKGQGTDEQHQKWLPLAYKME-------------IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 171 (529)
Q Consensus 105 l~~~~i~~~gt~eq~~~~L~~i~~g~-------------~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G 171 (529)
.....+..+|+++|+++|||++.+|+ .++++++|||++|||+..++|+|+++. +|+|+|| |
T Consensus 139 ~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln-----G 212 (538)
T PRK11561 139 FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV-----G 212 (538)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-----E
Confidence 44556677789999999999999997 567999999999999999999999852 6789999 9
Q ss_pred eeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCc
Q 009669 172 SKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPR 251 (529)
Q Consensus 172 ~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~ 251 (529)
+|||+++ ..||+++|+||+. .|+++|+||...++ ...+||++...++|+| +++.++++|.|+|| .
T Consensus 213 ~K~fiSa--~~AD~~lVlArt~-----~Gls~FlVp~~~p~--g~~nGv~i~rl~~klG---~r~~~t~ev~f~dv---~ 277 (538)
T PRK11561 213 HKWFFSV--PQSDAHLVLAQAK-----GGLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASSEVEFQDA---I 277 (538)
T ss_pred EEEEEEc--hhhCEEEEEEEEC-----CceEEEEEECCCCC--CCCCceEEeccccccc---CCCCceeEEEECCH---H
Confidence 9999994 6899999999984 47999999932111 1133899999999999 99999999999999 4
Q ss_pred ccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHH
Q 009669 252 NQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQ 331 (529)
Q Consensus 252 ~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q 331 (529)
+++||. .|.++. .+...+..+|+.+++.++|.+++|++.+++|+++|+|||+ ||++||.+|
T Consensus 278 ~~llG~------~g~G~~------~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~-------~L~~~q~vq 338 (538)
T PRK11561 278 GWLLGE------EGEGIR------LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGK-------PLIEQPLMR 338 (538)
T ss_pred HHHCCC------CCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------ccccCHHHH
Confidence 789984 676665 6777889999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHH
Q 009669 332 NRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLP 411 (529)
Q Consensus 332 ~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~ 411 (529)
++|++|.+.+++++.+++++++.+++. .+.....-....++++|+++++.+.+++++|+|+|||+||+++++++
T Consensus 339 ~~LAdm~~~ieaar~l~~~aa~~~d~~------~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~le 412 (538)
T PRK11561 339 QVLSRMALQLEGQTALLFRLARAWDRR------ADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELP 412 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHH
Confidence 999999999999999999999888631 11000111345678899999999999999999999999999999999
Q ss_pred HHhhhhcccccccccHHHHHHHHHHHHHH
Q 009669 412 ELFAVYVPACTYEGDNIVLLLQVARFLMK 440 (529)
Q Consensus 412 ~~~rd~~~~~~~eG~~~vl~~~ia~~ll~ 440 (529)
++|||++.+.++||++++++..++|.+.+
T Consensus 413 rl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 413 RLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999998875
No 39
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.7e-41 Score=354.96 Aligned_cols=328 Identities=17% Similarity=0.085 Sum_probs=259.0
Q ss_pred HHHHHHHHHcCC-----CHHHHhHhhhhc------------CCcchh--hhhhhchHHHHhcCCCHHHHHhHhHHhhccc
Q 009669 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (529)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~------------~~~~~~--~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~ 130 (529)
.+.|+.+.+.|| |+++||.+.++. +.+.++ .+|. .....|..+|+++|+++|++.+.+|+
T Consensus 25 ~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~ 103 (377)
T cd01163 25 YEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGW 103 (377)
T ss_pred HHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCC
Confidence 467888999887 578888665432 123332 3443 33467888999999999999999999
Q ss_pred eeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEecc
Q 009669 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRS 210 (529)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd 210 (529)
+++ .++||+++|+ +..+.|+++.+ +++|+|| |+|.|+++ +..||+++|+|++.. .++.+|+||
T Consensus 104 ~~~-~a~tE~~~~~-~~~~~~~~~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~----~~~~~~lV~--- 166 (377)
T cd01163 104 IFG-NAVSERGSVR-PGTFLTATVRD--GGGYVLN-----GKKFYSTG-ALFSDWVTVSALDEE----GKLVFAAVP--- 166 (377)
T ss_pred eEE-EeecCCCCCC-CCCceEEEEec--CCEEEEe-----ceEEeecC-CccceEEEEEEEcCC----CcEEEEEEe---
Confidence 765 5999999886 66777777766 7899999 99999999 899999999998542 357789999
Q ss_pred CCCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHH
Q 009669 211 LEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVA 290 (529)
Q Consensus 211 ~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa 290 (529)
.+.|||++.+.|+++| +++++++.|.|+||+||.+++|+. .+.+.. ....+...|+.+++
T Consensus 167 ----~~~~Gv~i~~~~~~~G---~~~~~s~~v~f~~v~Vp~~~~lg~------~~~g~~-------~~~~~~~~~l~~aa 226 (377)
T cd01163 167 ----TDRPGITVVDDWDGFG---QRLTASGTVTFDNVRVEPDEVLPR------PNAPDR-------GTLLTAIYQLVLAA 226 (377)
T ss_pred ----CCCCceeecCCccccc---CccCCcceEEEeeEEECHHHccCC------Cccccc-------cccccHHHHHHHHH
Confidence 7789999999999999 999999999999999999999984 333321 01123356788999
Q ss_pred HHHHHHHHHHHHHHHHhhcce-ecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009669 291 DASCALSRAVCIATRYSAVRR-QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFST 369 (529)
Q Consensus 291 ~~~G~~~~al~~av~Ya~~R~-qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (529)
.++|+++++++.+++|+++|+ +||++... ++.++|.+|++|++|.+.+++++++++.+++.+++........+...
T Consensus 227 ~~lG~a~~al~~~~~~~~~R~~~~g~~~~~---~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~ 303 (377)
T cd01163 227 VLAGIARAALDDAVAYVRSRTRPWIHSGAE---SARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEA 303 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCCcc---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 999999999999999999995 88873221 58999999999999999999999999999988875421100000001
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHHHHHH
Q 009669 370 LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 439 (529)
Q Consensus 370 ~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll 439 (529)
..+....++++|+++++.+.++++.|+|+|||+||+++++++++|||++...++...+ .....++.+++
T Consensus 304 ~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~ 372 (377)
T cd01163 304 RGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhc
Confidence 1234566889999999999999999999999999999999999999999988766654 44445555554
No 40
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.5e-37 Score=325.39 Aligned_cols=280 Identities=16% Similarity=0.116 Sum_probs=233.1
Q ss_pred HHHHHHHHHc-CC-----CHHHHhHhhhhcC------------Ccchh--hhhhhchHHHHhcCCCHHHHHhHhHHhhcc
Q 009669 70 AYAWKRIIEL-RL-----SEEEASMLRSSVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKM 129 (529)
Q Consensus 70 ~~~~~~l~~~-g~-----~~~~gg~~~~~~~------------~~~~~--~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g 129 (529)
..+.+.+.++ || |+++||.+.+... .+.++ ..|..+....|..+|+++||++|||++++|
T Consensus 53 ~~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasG 132 (520)
T PTZ00457 53 EQIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDG 132 (520)
T ss_pred HHHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 3444456777 66 6888887754421 12222 245456667888899999999999999999
Q ss_pred ceeeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEec----C-C--CCcceE
Q 009669 130 EIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT----D-G--QDHGVN 202 (529)
Q Consensus 130 ~~~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~----~-g--~~~g~~ 202 (529)
+.++|+|+|| +.|||+.++.|+|+++. +|+|+|| |+|.|+ + |..||+++|+|++.. + + +..|++
T Consensus 133 e~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~-g~~Ad~~lV~Art~~~~~~~~g~~~~~git 203 (520)
T PTZ00457 133 TIMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-F-AASATHFLVLAKTLTQTAAEEGATEVSRNS 203 (520)
T ss_pred CcEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-c-CchhcEEEEEeecCCcccccccccCcCceE
Confidence 9999999999 99999999999999863 4579999 999977 6 899999999999753 1 1 135799
Q ss_pred EEEEEeccCCCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHH
Q 009669 203 GFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMV 282 (529)
Q Consensus 203 ~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~ 282 (529)
+|+|| .+.|||++++ ++|.|||| |.+++||. .|.+++ .....+.
T Consensus 204 ~FlV~-------~dapGVtv~~---------------~eV~FddV--P~~~vLG~------~g~G~~------~a~~~L~ 247 (520)
T PTZ00457 204 FFICA-------KDAKGVSVNG---------------DSVVFENT--PAADVVGV------VGEGFK------DAMITLF 247 (520)
T ss_pred EEEEE-------CCCCceEEec---------------CEEEECCC--CHHHhCCC------CCchHH------HHHHHHH
Confidence 99999 7899999852 47999997 99999984 566654 5667788
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009669 283 YVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRL 362 (529)
Q Consensus 283 ~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~ 362 (529)
.+|+.+++.++|+++++++.+++|++ +|.+||+|++|.+.+++++++++.+++.+++
T Consensus 248 ~~Rl~~aA~~vGia~~ale~av~ya~------------------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~----- 304 (520)
T PTZ00457 248 TEQYLYAASLLGIMKRVVQELRGSNA------------------EEGATDTVASFACAMYAMESTLYALTANLDL----- 304 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 89999999999999999999999984 4799999999999999999999999998863
Q ss_pred hcCCCCChhhHHHHHHhHHHHHH---HHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHH
Q 009669 363 QANDFSTLPEAHACTAGLKSLTT---TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL 431 (529)
Q Consensus 363 ~~~~~~~~~~~~~~as~aK~~~~---~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~ 431 (529)
+ ..+.+..++++|+|++ +.+..++++++| .++++++++||++.+.++||+|++|+
T Consensus 305 --g----~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 305 --P----TEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred --C----CcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 1 1356788999999999 888888888877 79999999999999999999999999
No 41
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=6.8e-37 Score=319.42 Aligned_cols=327 Identities=13% Similarity=0.027 Sum_probs=250.3
Q ss_pred HHHHHHHHHcCC-----CHHHHhHhhhhc------------CCcchhhh-hhhchHHHHhcCCCHHHHHhHhHHhhccce
Q 009669 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPAFTDL-HWGMFVPAIKGQGTDEQHQKWLPLAYKMEI 131 (529)
Q Consensus 70 ~~~~~~l~~~g~-----~~~~gg~~~~~~------------~~~~~~~~-~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~ 131 (529)
.++|+.+.+.|| |+++||.+.+.. +.+.++.. ...+....+..+++++|++.|++.. .+.+
T Consensus 25 ~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 103 (370)
T cd01159 25 DEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGDGP-DTLL 103 (370)
T ss_pred HHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhCCHHHHHHHhCCCC-CceE
Confidence 457888888887 577887665432 12222211 1235556777889999999887743 1111
Q ss_pred eeeeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEEecCCCCcceEEEEEEeccC
Q 009669 132 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSL 211 (529)
Q Consensus 132 ~~~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~~~~g~~~g~~~flV~~rd~ 211 (529)
.++ ..+.|+|+++ +|+|+|| |+|.||++ +..||+++|+|++..+....++.+|+||
T Consensus 104 ~g~------------~~~~t~A~~~--~~gy~ln-----G~K~~it~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~---- 159 (370)
T cd01159 104 AGS------------YAPGGRAERV--DGGYRVS-----GTWPFASG-CDHADWILVGAIVEDDDGGPLPRAFVVP---- 159 (370)
T ss_pred Eee------------ecCCceeEEe--CCeEEEe-----ccccCccC-CCcCceeEeeeECCCCCCCCcceEEEEE----
Confidence 121 2356789887 7899999 99999999 8999999999997543334679999999
Q ss_pred CCCCCCCCeEEcccCCcccccccCCCCcceEEecceecCcccccccccccCCCCceeccCchhhHHHHHHHHHHHHhHHH
Q 009669 212 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 291 (529)
Q Consensus 212 ~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~ 291 (529)
.+ ||++.+.|.++| +++++++.|.|+||+||.+++|+........+.+... +- .....+...|+.+++.
T Consensus 160 ---~~--Gv~~~~~~~~~G---~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~--~~-~~~~~~~~~~~~~aa~ 228 (370)
T cd01159 160 ---RA--EYEIVDTWHVVG---LRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGST--PV-YRMPLRQVFPLSFAAV 228 (370)
T ss_pred ---hH--HCEEeccccccc---ccccCCCcEEEcceEcCccceecccccccCCCCCCCC--cc-ccCchHHHHHHHHHHH
Confidence 44 999999999999 9999999999999999999999742100000111100 00 0112344578899999
Q ss_pred HHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChh
Q 009669 292 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 371 (529)
Q Consensus 292 ~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (529)
++|+++++++.+++|++.|.||+... .||.+||.+|++|++|.+.+++++.+++.+++.+++.... +.. ...
T Consensus 229 ~lG~a~~~l~~~~~~~~~R~~~~~~g----~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~---~~~-~~~ 300 (370)
T cd01159 229 SLGAAEGALAEFLELAGKRVRQYGAA----VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALA---GGP-IDV 300 (370)
T ss_pred HHHHHHHHHHHHHHHhccCcccCCCc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC-CCH
Confidence 99999999999999999999984211 0899999999999999999999999999999988754211 111 112
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccH-HHHHHHHHHHHHH
Q 009669 372 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 440 (529)
Q Consensus 372 ~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~-~vl~~~ia~~ll~ 440 (529)
+....++.+|+++++.+.++++.++|+|||+||+++++++++|||++...+++|++ ++++..++|.+|+
T Consensus 301 ~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 301 EERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 34456788999999999999999999999999999999999999999999999999 9999999998863
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=276.38 Aligned_cols=288 Identities=20% Similarity=0.304 Sum_probs=253.5
Q ss_pred HHhcCCCHHHHHhHhHHhhccceeeeeecCCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCC-CCCcEE
Q 009669 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG-KVSTHA 186 (529)
Q Consensus 109 ~i~~~gt~eq~~~~L~~i~~g~~~~~~a~tE~~-~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~-~~A~~~ 186 (529)
.|..+|++|||.+||-++.+|++..|||||||. +.||..++++.-.++ ++.|||| |.|||++|.+ +.|..+
T Consensus 91 vl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~--~~~YvIN-----g~KWw~sga~~PkCrv~ 163 (392)
T KOG1469|consen 91 VLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRD--GDSYVIN-----GKKWWISGAGDPKCRIA 163 (392)
T ss_pred ehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEc--CCEEEEe-----cceeeecCCCCCceEEE
Confidence 578899999999999999999999999999998 568999999999998 8999999 9999999832 457899
Q ss_pred EEEEEEecC--CCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCCC--cceEEecceecCcccccccccccC
Q 009669 187 VVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMRVSQVT 262 (529)
Q Consensus 187 lV~Ar~~~~--g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~~--~~~v~fd~vrVP~~~lL~~~~~v~ 262 (529)
+++.+++.. .++...++.||| ...|||.|...-..+| +...+ ..+|+|+|||||..|||-.
T Consensus 164 i~mGkt~~~~~~rhkQqSmiLVp-------M~TpGvkiiRpltVfG---~~DapgGH~Ei~F~~VrVP~~NmlLG----- 228 (392)
T KOG1469|consen 164 IFMGKTDNTSASRHKQQSMILVP-------MNTPGVKIIRPLTVFG---YTDAPGGHFEIHFENVRVPATNMLLG----- 228 (392)
T ss_pred EEecccCCCccchhhcccEEEEe-------cCCCCeeEeeeeeeec---cccCCCCcceEEEEEEEeeccceeec-----
Confidence 999998764 334567899999 7789999988878888 55443 5689999999999998853
Q ss_pred CCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHH
Q 009669 263 REGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAY 342 (529)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~ 342 (529)
+|.++. +..+-+..+|+..|.-.+|.+++|+++.-+-+..|..||+ ++..+.++.+-++..-.+++
T Consensus 229 -eGrGFE------IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-------~l~q~~s~~~diA~sRveiE 294 (392)
T KOG1469|consen 229 -EGRGFE------IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-------KLVQHGSVAHDIAESRVEIE 294 (392)
T ss_pred -CCCcce------eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhhcchHHHHHHHHHhHhh
Confidence 677665 5556777899999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhccccc
Q 009669 343 AFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACT 422 (529)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~ 422 (529)
-+|.++..++..+|.. ++ ..+....++.|+.+-..+..+++.++|.|||.|.+.+.++.++|.-++...+
T Consensus 295 qaRLLvLkAAh~mD~~------G~----k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lri 364 (392)
T KOG1469|consen 295 QARLLVLKAAHSMDTL------GN----KGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRI 364 (392)
T ss_pred hhhhhhhhhhhhhhhh------cc----hhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEe
Confidence 9999999999887643 22 3455668899999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHH
Q 009669 423 YEGDNIVLLLQVARFLMKTV 442 (529)
Q Consensus 423 ~eG~~~vl~~~ia~~ll~~~ 442 (529)
..|..++++..+++.-++.-
T Consensus 365 adgPd~vhL~ai~~le~~~~ 384 (392)
T KOG1469|consen 365 ADGPDEVHLSAIAKLELRDQ 384 (392)
T ss_pred ccCCCccchhhhhhhhHHHH
Confidence 99999999999999777653
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.86 E-value=1.8e-20 Score=199.61 Aligned_cols=248 Identities=8% Similarity=0.064 Sum_probs=186.5
Q ss_pred hcCCCHH--HHHhHhHHhhccceeeeeecCCCCCC-C----CCCC--CceEEEEeCCCCeEEEecCCCCceeeccCCCCC
Q 009669 111 KGQGTDE--QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQG--LETTATFDPQTDEFVIHSPTLTSSKWWPGGLGK 181 (529)
Q Consensus 111 ~~~gt~e--q~~~~L~~i~~g~~~~~~a~tE~~~G-s----d~~~--~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~ 181 (529)
...+++- --.+|+..+.+..+..+.++|.|-.- | .... +-...+. +++|||||| |.|.|+|+ +
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve-~~~dGiVV~-----GaK~~~T~-~- 190 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVE-QTDKGVIVR-----GARMTATF-P- 190 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEE-EcCCCEEEe-----CHHHhhhh-c-
Confidence 4455443 34689999999999999999987532 1 1111 1112222 237899999 99999998 7
Q ss_pred CCcEEEEEEEEecCCCC-cc--eEEEEEEeccCCCCCCCCCeEEcccCCcccccccCCC-----------CcceEEecce
Q 009669 182 VSTHAVVYARLITDGQD-HG--VNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM-----------DNGVLRFEHV 247 (529)
Q Consensus 182 ~A~~~lV~Ar~~~~g~~-~g--~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~~~-----------~~~~v~fd~v 247 (529)
.||.++|++++...+++ .+ ..+|+|| .+.|||++.....++| .++. ..+.|.||||
T Consensus 191 ~ad~~~V~~~~~~~~~~~~~~ya~~F~VP-------~dtpGl~~i~r~~~~~---~~~~~D~plssrfde~da~vvFDdV 260 (477)
T TIGR02309 191 IADEILIFPSTVLKAGAEKDPYALAFAIP-------TNTPGLHFVCREALDG---GDSPFDHPLSSRFEEMDALVIFDDV 260 (477)
T ss_pred ccceEEEeccCCCCCccCCCCeEEEEEee-------CCCCceEEEeCCccCC---CCCcccCccccccCCCeEEEEeCce
Confidence 99999999997654332 33 5899999 8999999998888888 6655 5689999999
Q ss_pred ecCcccc--cccccccCCCCceeccCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCccccc
Q 009669 248 RIPRNQM--LMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVI 325 (529)
Q Consensus 248 rVP~~~l--L~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~ 325 (529)
+||.+++ +|.... .+.++. .+ ..++..+..++|.+..+++.++.|+.. .+|+. ++.
T Consensus 261 ~VPwe~VF~~g~~e~---a~~~f~---------~~--~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~-------gi~ 318 (477)
T TIGR02309 261 LVPWERIFILGDVEL---CNNAYA---------AT--GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGI-------GAD 318 (477)
T ss_pred eccHHHhhhcCCHHH---HHHHHH---------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-------Ccc
Confidence 9999999 663100 022221 11 123556788899999999999999999 99999 999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Q 009669 326 DYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (529)
Q Consensus 326 ~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~ 405 (529)
++|.+|++|++|.+.+++++++++.+++..+. +...........++++|.++++...++. +|+|.+||.|+.
T Consensus 319 ~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~-------~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~ 390 (477)
T TIGR02309 319 GFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKE-------NAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLI 390 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------CCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEE
Confidence 99999999999999999999999988764431 1111110124568899999999999995 999999999997
Q ss_pred C
Q 009669 406 C 406 (529)
Q Consensus 406 ~ 406 (529)
.
T Consensus 391 ~ 391 (477)
T TIGR02309 391 T 391 (477)
T ss_pred e
Confidence 5
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.86 E-value=2.3e-20 Score=169.19 Aligned_cols=145 Identities=27% Similarity=0.217 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009669 276 LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 355 (529)
Q Consensus 276 ~~~~~l~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~ 355 (529)
++...+..+|+.+++.++|.++.+++.+++|+..|++||+ |+.++|.++++|+++.+.++++++++++++..+
T Consensus 6 ~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~ 78 (150)
T PF00441_consen 6 VALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRRRLADMAARLEAMRALVYRAARRL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHHHHHhhccchhhhhcccccccccc
Confidence 6677899999999999999999999999999999999998 999999999999999999999999999998866
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccccccccHHHHHHHHH
Q 009669 356 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA 435 (529)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia 435 (529)
++ +. .....++++|.++++.+.++++.|+++|||.||+.+++++++++|++.+.+++|++++++.+|+
T Consensus 79 ~~--------~~----~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia 146 (150)
T PF00441_consen 79 DA--------GQ----NDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIA 146 (150)
T ss_dssp HT--------TS----STHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHH
T ss_pred cc--------cc----ccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHH
Confidence 52 11 1156688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 009669 436 RFLM 439 (529)
Q Consensus 436 ~~ll 439 (529)
+.+|
T Consensus 147 ~~~l 150 (150)
T PF00441_consen 147 RRLL 150 (150)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 45
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=99.62 E-value=2.7e-15 Score=132.07 Aligned_cols=116 Identities=39% Similarity=0.629 Sum_probs=93.8
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCC-CcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC----HHH----Hh
Q 009669 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRK-DNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEE----AS 87 (529)
Q Consensus 17 ~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~~----~~~----gg 87 (529)
|+++|+.+|+|++++.+.|+++.+++.++|.|.. .+.++++|++.++.+.++..++++.+..++|. ..+ +.
T Consensus 1 dv~eLt~~l~Gg~~~~~~rr~i~~~i~~dP~f~~~~~~~~lsr~e~~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF14749_consen 1 DVEELTNFLDGGEEKLERRREIESLIESDPIFSKPPDRYFLSREERYERALRKARRLIKLLKQLGWDDNQDPDDAFMIGL 80 (125)
T ss_dssp -HHHHHHHHHSSHHHHHHHHHHHHHHHT-GGG---TTGGGS-HHHHHHHHHHHHHHHHHHHHHTT-----SHHHHHHH--
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHhhChhhhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 7999999999999999999999999999999998 66799999999999999999999999999994 222 22
Q ss_pred HhhhhcCCcchhhhhhhchHHHHhcCCCHHHHHhHhHHhhcccee
Q 009669 88 MLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (529)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~~~ 132 (529)
....+++.+.|+.+|++||.++|..+||+||+++|||++.+.+|+
T Consensus 81 ~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 81 LMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred HHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 346667788999999999999999999999999999999999875
No 46
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.42 E-value=2.4e-13 Score=100.19 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=46.3
Q ss_pred eeecCCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEEE
Q 009669 134 CYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL 192 (529)
Q Consensus 134 ~~a~tE~~~Gsd~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar~ 192 (529)
|||+|||++|+|+..++|+|+++ +++|+|| |.|+||++ +..||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~--~~~~~L~-----G~K~~v~~-~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRD--GDGYVLN-----GEKRFVSN-APDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEE--TTEEEEE-----EEEEEEET-TTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecc--cceEEEe-----eEEEEECC-cCccCEEEEEEEE
Confidence 78999999999999999999999 7889999 99999999 8999999999997
No 47
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.33 E-value=1.9e-11 Score=108.87 Aligned_cols=130 Identities=18% Similarity=0.056 Sum_probs=108.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhccee--cCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009669 286 QTIVADASCALSRAVCIATRYSAVRRQ--FGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 363 (529)
Q Consensus 286 ~~~aa~~~G~~~~al~~av~Ya~~R~q--Fg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 363 (529)
+.+++.++|+++++++.+++|++.|.. ++. ++.+.+.+|.+|+++.+.+++++...+.++..+++...
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~-------~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~--- 70 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGA-------PLADDPYIQARLGEAAARLDAARALLYRAARRLWEAAD--- 70 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-------BCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-------chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 357889999999999999999998877 333 89999999999999999999999999999887765432
Q ss_pred cCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhccccccccc
Q 009669 364 ANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGD 426 (529)
Q Consensus 364 ~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~ 426 (529)
.+... .++........|.++++.+.++++.+++++||.|+...++++|+|||++....+...
T Consensus 71 ~g~~~-~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 71 AGEEL-TPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp TT-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred ccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 22221 345666778889999999999999999999999999999999999999988776543
No 48
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.40 E-value=1.9e-07 Score=80.17 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=65.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHhHhhhhcC--------
Q 009669 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (529)
Q Consensus 28 ~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~g~-----~~~~gg~~~~~~~-------- 94 (529)
||++.++++++++|+.++-. . .....+....+..++|+.+.+.|| |+++||.+.+...
T Consensus 1 t~~~~~l~~~~~~~~~~~~~--~-------~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l 71 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIA--P-------HAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEEL 71 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTH--H-------HHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHch--H-------HHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhh
Confidence 57899999999999976431 0 111121111344667999999997 5777776543221
Q ss_pred ----Cc--chhhhhhhchHHHHhcCCCHHHHHhHhHHhhccc
Q 009669 95 ----EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (529)
Q Consensus 95 ----~~--~~~~~~~~l~~~~i~~~gt~eq~~~~L~~i~~g~ 130 (529)
.+ ..+.+|..+++.+|..+|++|||++|||++.+||
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 72 ARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 12 2346676777889999999999999999999986
No 49
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.40 E-value=2.8e-05 Score=83.57 Aligned_cols=277 Identities=14% Similarity=0.129 Sum_probs=152.3
Q ss_pred HHHhHhHHhhccceeeeeecCCCCCC-C----CCCCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEE-EEE
Q 009669 118 QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV-YAR 191 (529)
Q Consensus 118 q~~~~L~~i~~g~~~~~~a~tE~~~G-s----d~~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV-~Ar 191 (529)
--.+|+..+.+..+..+.|++.|-.- | .....-...+. ...+|-||+ |.|...++ +..+|.++| ...
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVe-e~~dGIVVr-----GAK~~aT~-a~~a~ei~V~~~~ 209 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEE-ERDDGIVVS-----GAKVVATN-SALTHYNFIGFGS 209 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEE-EcCCcEEEe-----CHHHHhcc-cchhcceeeccCc
Confidence 34689999999999999999987532 1 11122222222 226789999 99999998 899998888 444
Q ss_pred Ee--cCCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcc-ccccc-CCCC----------cceEEecceecCccccccc
Q 009669 192 LI--TDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF-GNGAY-NTMD----------NGVLRFEHVRIPRNQMLMR 257 (529)
Q Consensus 192 ~~--~~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~-G~~~~-~~~~----------~~~v~fd~vrVP~~~lL~~ 257 (529)
.. .+.++.. ..|.|| .+.|||++--....- +..+. ...| -+-|.||||+||.++++.-
T Consensus 210 ~~~~~~d~dyA-vaFavP-------~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~ 281 (519)
T TIGR02310 210 AQIIGDNDDFA-LMFIAP-------MDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIY 281 (519)
T ss_pred ccccCCCCCeE-EEEEeE-------cCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceec
Confidence 31 1233333 479999 899999885332111 00000 0111 2569999999999999851
Q ss_pred ccccCCCCcee-ccCchhhHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccchHHHHHHHH
Q 009669 258 VSQVTREGKYV-QSNVPRQLLYGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLF 335 (529)
Q Consensus 258 ~~~v~~~g~~~-~~~~~~~~~~~~l~~~r-~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa 335 (529)
+++..-..+. ..... ..+..-...| +..+-..+|++..+ +++. -+..|+.+|.+|+
T Consensus 282 -gd~e~~~~~~~~~~~~--~~~~~q~~~r~~~k~dfl~G~a~~~----ae~~---------------G~~~~~hVqekl~ 339 (519)
T TIGR02310 282 -RDFERCRTWAQYGGFA--RLFPMQACTRLAVKLDFITGLLHKA----LQCT---------------GVLEFRGVQAQMG 339 (519)
T ss_pred -CCHHHHHhHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHh---------------CcccchHHHHHHH
Confidence 1110000011 00000 0000001112 11112222333222 2221 2457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-ccccCc------
Q 009669 336 PLLASAYAFRFVGEWLKWLYTDVTQRLQANDFS-TLPEAHACTAGLKSLTTTATADGIEECRKLCGG-HGYLCS------ 407 (529)
Q Consensus 336 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG-~Gy~~~------ 407 (529)
+|++..+.+++....+...-. ..... -.|+ ...+..+|.+..+..-++.+.+.+.+|| .=++-.
T Consensus 340 Eli~~~E~~~a~~~Aa~~~~~-------~~~~G~~~P~-~~~~~a~r~~~~~~y~r~~eil~~~~agGli~~pss~~Df~ 411 (519)
T TIGR02310 340 EVVAWRNLFWTLTDAMAGSAY-------QWKNGAQLPS-AQALQTYRVMAPMAYHTIKKIIEQTVTSGLIYLPSHIRDLN 411 (519)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-------cCCCCeEeeC-HHHHHHHHHHhhhhhHHHHHHHHHHccCCeeecCCcHHHcc
Confidence 999999999877665532110 01111 1233 3345678999999999999999977664 333311
Q ss_pred -CCHHHHhhhhccccc-ccccHHHHHHHHHHHHH
Q 009669 408 -SGLPELFAVYVPACT-YEGDNIVLLLQVARFLM 439 (529)
Q Consensus 408 -~~l~~~~rd~~~~~~-~eG~~~vl~~~ia~~ll 439 (529)
..+..++.......- +.....+-..+++..+.
T Consensus 412 npe~~~~l~kyl~g~~~~~aeeRvkl~rL~wDl~ 445 (519)
T TIGR02310 412 NPQIDQYLEKYVRGSNGMEHRERIKILKLLWDAI 445 (519)
T ss_pred CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 123344444333322 44445555555555553
No 50
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=3.2e-05 Score=80.64 Aligned_cols=251 Identities=16% Similarity=0.148 Sum_probs=144.1
Q ss_pred CCCHHH--HHhHhHHhhccceeeeeecCCCCCC-C----CCC--CCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCC
Q 009669 113 QGTDEQ--HQKWLPLAYKMEIIGCYAQTELGHG-S----NVQ--GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 183 (529)
Q Consensus 113 ~gt~eq--~~~~L~~i~~g~~~~~~a~tE~~~G-s----d~~--~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A 183 (529)
+|++-. -.+|+..+....+..+-|+|.|-.- | -.. .+-...+. ...+|-|++ |.|..+++ +..+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVve-e~~dGIVVr-----GAK~~aT~-~a~t 197 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVE-ETEDGIVVR-----GAKALATG-SALT 197 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEE-EecCceEEE-----ChHHHhcc-cccc
Confidence 555543 4689999999999999999987532 1 111 12222222 225789999 99999999 8899
Q ss_pred cEEEEE-EEEec-CCCCcceEEEEEEeccCCCCCCCCCeEEcccCCc-ccccccCCC------------CcceEEeccee
Q 009669 184 THAVVY-ARLIT-DGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK-FGNGAYNTM------------DNGVLRFEHVR 248 (529)
Q Consensus 184 ~~~lV~-Ar~~~-~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k-~G~~~~~~~------------~~~~v~fd~vr 248 (529)
|..+|+ .+.-. +.++. -..|.|| .+.|||.+--.... .+ .++.+. .-+.|.||||.
T Consensus 198 dei~V~Pt~~~~~~d~df-Av~FaiP-------~dt~GvK~i~r~s~~~~-~~~~~g~fd~plssrfde~dailVfDdVf 268 (493)
T COG2368 198 DEIFVLPTRSMQEDDKDF-AVAFAIP-------MDTEGVKFICRRSYELG-RGAEGGPFDYPLSSRFDENDAILVFDDVF 268 (493)
T ss_pred ceEEEeeccccCCCCCce-EEEEEcc-------cCCCceEEEecCcchhh-cccCCCCCCCccccccccCceEEEecccc
Confidence 999988 44322 22233 3489999 88999876332211 11 001111 12459999999
Q ss_pred cCcccccccccccCCCCceeccCchhhHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHhhcceecCCCCCCCcccccch
Q 009669 249 IPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTM-VYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 327 (529)
Q Consensus 249 VP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l-~~~r~~~aa~~~G~~~~al~~av~Ya~~R~qFg~~~~~~e~~i~~~ 327 (529)
||.++++- +.++.. . . .. .....+ .+.|...+..-.+-+.- -+...|...+. - -+.+|
T Consensus 269 VPWERVf~-y~d~~~---~-~---~~-~~~~~Fa~~~~~q~~~~k~~k~d~--i~G~~~~~~~~-~---------Gv~~~ 327 (493)
T COG2368 269 VPWERVFI-YRDLER---A-Y---AW-YAVSGFARLHRQQAVGRKAVKLDF--ILGAAYLIAET-N---------GVEEF 327 (493)
T ss_pred cchhheee-eccHHH---H-H---HH-HHHHHHHHHhhhhhhhhhHHHHHH--HHHHHHHHHHh-h---------Cccch
Confidence 99999884 111110 0 0 00 011111 11121111111111111 11112222221 1 35789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccC
Q 009669 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQAND-FSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 406 (529)
Q Consensus 328 q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~Gy~~ 406 (529)
+.+|.+|.+|++..+.+.++...++.--. ... ....| -...+...|.++...-.++.+.+.++.||.-.+.
T Consensus 328 ~hIq~kl~Emi~~~e~~~al~~Aa~~~a~-------~~~~G~~~P-n~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~l 399 (493)
T COG2368 328 RHIQEKLGEMIALLELMWALSDAAAEEAQ-------KNPNGAWLP-NPAYANVGRVYAPKAYPRIKEILQDISGGGIITL 399 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cCCCCceec-CHHHHhhHHHhcccchHHHHHHHHHHhcCceeec
Confidence 99999999999999998887766543111 111 11122 3455678899999999999999999988754443
Q ss_pred cC
Q 009669 407 SS 408 (529)
Q Consensus 407 ~~ 408 (529)
.+
T Consensus 400 PS 401 (493)
T COG2368 400 PS 401 (493)
T ss_pred Cc
Confidence 33
No 51
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.03 E-value=0.0048 Score=60.90 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=73.9
Q ss_pred HHHhHhHHhhccceeeeeecCCCCCC-C-CC----CCCceEEEEeCCCCeEEEecCCCCceeeccCCCCCCCcEEEEEEE
Q 009669 118 QHQKWLPLAYKMEIIGCYAQTELGHG-S-NV----QGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYAR 191 (529)
Q Consensus 118 q~~~~L~~i~~g~~~~~~a~tE~~~G-s-d~----~~~~TtAt~d~~~~~~vLntp~~~G~K~~v~~l~~~A~~~lV~Ar 191 (529)
--.+|+..+.+..+..+.|++.|..- | .. ..+-...+.. ..+|-||+ |.|...++ +..||.++|+--
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~-a~~adei~V~p~ 196 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATG-APYADEILVFPT 196 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEET-GCCSSEEEE--S
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcC-CcccccEEEeec
Confidence 45688999999999999999998521 1 11 1122233322 25899999 99999998 899999999764
Q ss_pred Eec--CCCCcceEEEEEEeccCCCCCCCCCeEEcccCCcccccccC--CCC----------cceEEecceecCccccc
Q 009669 192 LIT--DGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN--TMD----------NGVLRFEHVRIPRNQML 255 (529)
Q Consensus 192 ~~~--~g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~k~G~~~~~--~~~----------~~~v~fd~vrVP~~~lL 255 (529)
..- +.+++ -..|.|| .+.||+++--...... .+ ..| -+.|.||||+||.++++
T Consensus 197 ~~~~~~d~dy-Av~FavP-------~~tpGlk~i~R~s~~~---~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 197 RAMRPGDEDY-AVAFAVP-------MNTPGLKIICRESYAD---GRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSTTCCGGG--EEEEEE-------TT-TTEEEEE---TTG---CCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred cCCCCCCCce-EEEEEcc-------CCCCCEEEEeCCCCCC---CccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 321 22233 3589999 8999998854433222 11 112 24699999999999875
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=87.05 E-value=6.3 Score=43.11 Aligned_cols=86 Identities=21% Similarity=0.109 Sum_probs=61.7
Q ss_pred HHHHHHHhhcceecCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHh
Q 009669 300 VCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAG 379 (529)
Q Consensus 300 l~~av~Ya~~R~qFg~~~~~~e~~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~ 379 (529)
+..+++|...|. |+ .|.+-|.+..||+++.+.+||+...+.++...... +. +........
T Consensus 418 ~~~~v~~~~~~~--~~-------~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~-------~~----~~~~~e~~l 477 (520)
T PTZ00457 418 FGNAVEATFVRS--GS-------QVPYQQLLLNRLGEAASLLYAASAVASRASMCVSK-------GL----PSAKVEGEL 477 (520)
T ss_pred HHHHHHHHHHHH--Hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC----CchHHHHHH
Confidence 445566655553 45 78999999999999999999998877777544331 21 222222457
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccC
Q 009669 380 LKSLTTTATADGIEECRKLCGGHGYLC 406 (529)
Q Consensus 380 aK~~~~~~a~~~~~~~~q~~GG~Gy~~ 406 (529)
+++||.+...++-..+-+++.. ++..
T Consensus 478 a~~fc~~a~~rv~~~~~~~~~~-~~~~ 503 (520)
T PTZ00457 478 ASAFIAMAVSRARQLSEESCNV-GKTA 503 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 8999999999998888888876 5543
No 53
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=86.26 E-value=14 Score=35.22 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Q 009669 324 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 403 (529)
Q Consensus 324 i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~G 403 (529)
+..|+.||.+|++++...+.+++.+..+...- ..........-...+..+|.+..+..-++++.+++++||.=
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a-------~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~l 116 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEA-------EPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGL 116 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT--------EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 56799999999999999999998876553211 11111111122344677899999999999999999999865
Q ss_pred ccCc-------CCHHHHhhhhcccc-cccccHHHHHHHHHHHHH
Q 009669 404 YLCS-------SGLPELFAVYVPAC-TYEGDNIVLLLQVARFLM 439 (529)
Q Consensus 404 y~~~-------~~l~~~~rd~~~~~-~~eG~~~vl~~~ia~~ll 439 (529)
.+.. ..+..++....... -..+...+-..+++..+.
T Consensus 117 i~~Ps~~Df~npe~~~~l~kYl~g~~~~~aeeR~rl~rLawDl~ 160 (205)
T PF03241_consen 117 ITLPSEADFDNPEIGPYLDKYLQGANGVSAEERVRLFRLAWDLT 160 (205)
T ss_dssp TC---HHHHH-TTTHHHHHHHT-BTTTC-HHHHHHHHHHHHHHH
T ss_pred eeCCCHHHhCCcchhHHHHHHhcccCCCCHHHHHHHHHHHHHHh
Confidence 5542 23455555554444 555556666666666664
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=73.89 E-value=39 Score=36.97 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=55.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 009669 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 401 (529)
Q Consensus 323 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG 401 (529)
-|.+-|.+-+|||+.+..+|++-+...++-+.+.. .++....+.+.++++|++....+...+-++-++
T Consensus 536 ~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~i-----------gl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 536 GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSI-----------GLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999888888665542 123444556788999999999998888887776
No 55
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=28.17 E-value=34 Score=35.73 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhccccccCcCCHHHHhhhhcccc--cccccHHHHHHHHHHHHHHHHHHhcCCC
Q 009669 384 TTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC--TYEGDNIVLLLQVARFLMKTVSQLGYGN 449 (529)
Q Consensus 384 ~~~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd~~~~~--~~eG~~~vl~~~ia~~ll~~~~~~~~~~ 449 (529)
++..|.++.-+.+++||+|||. +++++....--+ -|.|+ -.-+.++...+++..+++.+..
T Consensus 154 AA~rA~~AGFDgVEIH~AhGYL----i~qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~~ 216 (363)
T COG1902 154 AARRAKEAGFDGVEIHGAHGYL----LSQFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGAD 216 (363)
T ss_pred HHHHHHHcCCCEEEEeeccchH----HHHhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCCC
Confidence 3444556666788999999997 445555433333 47777 5567788888888888765443
No 56
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=25.40 E-value=4.6e+02 Score=30.42 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=55.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHhccc
Q 009669 323 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 402 (529)
Q Consensus 323 ~i~~~q~~q~rLa~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~~~~a~~~~~~~~q~~GG~ 402 (529)
.|..-|.+..||+|+++.+|++.+.+.+.-+ .+.. ..+ ...++.+|.+...++-+..-++....
T Consensus 562 ~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~~----------~~~~--~~~----~~l~~~~~~~~~~~~~~~~~~~~~n~ 625 (777)
T PRK09463 562 SLKRRERLSARLGDILSQLYLASAVLKRYED----------EGRP--EAD----LPLVHWAVQDALYQAEQALDGLLRNF 625 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCc--hhH----HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5677788899999999999998776655421 1111 011 12333333333333322232333322
Q ss_pred cccCcCCHHHHhhhhcc--cccccccHHHHHHHHHHHHHHH
Q 009669 403 GYLCSSGLPELFAVYVP--ACTYEGDNIVLLLQVARFLMKT 441 (529)
Q Consensus 403 Gy~~~~~l~~~~rd~~~--~~~~eG~~~vl~~~ia~~ll~~ 441 (529)
. .-.+..++|-... ...+.+.++.+..++|+.++..
T Consensus 626 p---~~~~~~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~~~ 663 (777)
T PRK09463 626 P---NRVVAGLLRVLVFPLGRRYRAPSDKLDHQVAKLLQTP 663 (777)
T ss_pred C---chHHHHHHHHeeeCCCCCCCCCCHHHHHHHHHHHhCC
Confidence 2 1123444443321 2357788899999999998743
No 57
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=20.09 E-value=2.4e+02 Score=25.15 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCCcceEEEEEEeccCCCCCCCCCeEEcccCC
Q 009669 196 GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGM 227 (529)
Q Consensus 196 g~~~g~~~flV~~rd~~~~~~~pGv~i~~~~~ 227 (529)
+...-+.+-|+|++. ++.+.|.|+|....+
T Consensus 86 ~~~~~~~l~LIPL~~--G~L~lP~V~i~~~~~ 115 (147)
T PF12584_consen 86 GSEHEIPLTLIPLRA--GYLPLPKVEIRPYDP 115 (147)
T ss_pred CCeEEEEEEEEeccc--ceecCCEEEEEeccC
Confidence 334457788999884 557899999988763
Done!