Your job contains 1 sequence.
>009670
MTAEEKGGSSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITAL
KMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGAC
DYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEFEKSYRKRKDQDGEDEDEDGDDDG
HENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQ
KFRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGALDGFGGSHSVNSPGRLSSSALSSSYV
PGSMIGRLNSSAGLSMHGIASSGMIKPGLSQSFNTSFNTIGKNQQAMFPANRNSNLVQGV
QTSLEPNQMPQSESTTHIGDFNHINSPTAFTAATGFIDARVAVGSSSSSVSTSLSNLMML
QANPHQAQSRDAYGNQSSLTVASLNQAYFDLGVHDSSNFLDHGRCQESWQDAVQLSKSSS
ISLPLGEPFILDQVPPNKDNILSSNCYLDISSSIANSTHLENSRGDLSY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009670
(529 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 830 8.2e-83 1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 817 2.0e-81 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 468 3.8e-72 2
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 421 5.4e-63 2
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 617 3.1e-60 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 290 2.0e-44 2
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 290 2.0e-44 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 455 6.3e-43 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 405 8.9e-38 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 182 2.3e-21 2
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 255 3.6e-19 1
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 227 3.5e-18 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 217 4.3e-17 1
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 216 5.5e-17 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 237 1.1e-16 1
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 157 2.0e-16 3
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 226 1.4e-15 1
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 215 3.1e-15 1
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 208 4.3e-14 1
TIGR_CMR|SPO_1679 - symbol:SPO_1679 "DNA-binding response... 181 3.5e-13 1
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response... 177 9.6e-13 1
UNIPROTKB|O53894 - symbol:mprA "Response regulator MprA" ... 176 1.2e-12 1
UNIPROTKB|P0A5Z4 - symbol:mtrA "DNA-binding response regu... 176 1.2e-12 1
TIGR_CMR|BA_0585 - symbol:BA_0585 "DNA-binding response r... 176 1.2e-12 1
TIGR_CMR|DET_1540 - symbol:DET_1540 "DNA-binding response... 176 1.2e-12 1
UNIPROTKB|P0A5Z6 - symbol:prrA "Transcriptional regulator... 172 3.3e-12 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 172 3.3e-12 1
TIGR_CMR|BA_3900 - symbol:BA_3900 "lantibiotic biosynthes... 169 7.0e-12 1
TIGR_CMR|SO_0622 - symbol:SO_0622 "DNA-binding response r... 169 7.0e-12 1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu... 168 9.0e-12 1
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 190 9.6e-12 2
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 188 1.1e-11 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 167 1.2e-11 1
TIGR_CMR|BA_0577 - symbol:BA_0577 "response regulator" sp... 171 1.3e-11 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 163 3.1e-11 1
TAIR|locus:2093726 - symbol:AT3G24120 species:3702 "Arabi... 178 4.2e-11 1
TAIR|locus:2119425 - symbol:UNE16 "unfertilized embryo sa... 176 6.9e-11 1
TIGR_CMR|SPO_0251 - symbol:SPO_0251 "DNA-binding response... 166 1.0e-10 1
TIGR_CMR|GSU_0451 - symbol:GSU_0451 "DNA-binding response... 162 1.6e-10 1
TAIR|locus:2087740 - symbol:AT3G12730 species:3702 "Arabi... 164 2.9e-10 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 153 3.8e-10 1
TIGR_CMR|BA_1119 - symbol:BA_1119 "DNA-binding response r... 163 4.1e-10 1
TIGR_CMR|CJE_1358 - symbol:CJE_1358 "DNA-binding response... 152 4.3e-10 2
TIGR_CMR|CPS_2786 - symbol:CPS_2786 "response regulator" ... 164 4.9e-10 1
TIGR_CMR|BA_1955 - symbol:BA_1955 "DNA-binding response r... 159 1.0e-09 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 149 1.0e-09 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 149 1.0e-09 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 149 1.0e-09 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 149 1.0e-09 1
TIGR_CMR|BA_2212 - symbol:BA_2212 "DNA-binding response r... 158 1.3e-09 1
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r... 157 1.4e-09 1
TAIR|locus:2206415 - symbol:APL "ALTERED PHLOEM DEVELOPME... 167 1.5e-09 1
UNIPROTKB|Q4K714 - symbol:PFL_4888 "Sigma-54 dependent DN... 169 1.6e-09 1
TIGR_CMR|BA_0651 - symbol:BA_0651 "DNA-binding response r... 157 1.7e-09 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 147 1.7e-09 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 147 1.7e-09 1
TIGR_CMR|BA_1497 - symbol:BA_1497 "DNA-binding response r... 159 1.9e-09 1
TIGR_CMR|BA_0571 - symbol:BA_0571 "DNA-binding response r... 156 2.0e-09 1
UNIPROTKB|A5U0E5 - symbol:phoP "Putative two component sy... 160 2.0e-09 1
UNIPROTKB|P71814 - symbol:phoP "Possible two component sy... 160 2.0e-09 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 146 2.2e-09 1
TIGR_CMR|CPS_1750 - symbol:CPS_1750 "transcriptional regu... 159 2.2e-09 1
TIGR_CMR|BA_5275 - symbol:BA_5275 "DNA-binding response r... 155 2.3e-09 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 171 2.4e-09 1
TIGR_CMR|CHY_0606 - symbol:CHY_0606 "DNA-binding response... 156 2.5e-09 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 145 2.8e-09 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 145 2.8e-09 1
TAIR|locus:2095933 - symbol:MYR2 species:3702 "Arabidopsi... 165 3.2e-09 1
TIGR_CMR|CJE_1664 - symbol:CJE_1664 "DNA-binding response... 155 3.4e-09 1
TIGR_CMR|DET_1058 - symbol:DET_1058 "DNA-binding response... 155 3.7e-09 1
UNIPROTKB|Q9AE24 - symbol:rprY "Transcriptional regulator... 156 4.3e-09 1
TIGR_CMR|GSU_1495 - symbol:GSU_1495 "sigma-54 dependent D... 165 4.5e-09 1
TIGR_CMR|SO_4633 - symbol:SO_4633 "transcriptional regula... 156 5.2e-09 1
TIGR_CMR|GSU_0008 - symbol:GSU_0008 "sensory box histidin... 165 5.6e-09 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 142 5.8e-09 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 142 5.8e-09 1
TIGR_CMR|BA_0924 - symbol:BA_0924 "response regulator" sp... 153 6.4e-09 1
TIGR_CMR|BA_4833 - symbol:BA_4833 "DNA-binding response r... 155 6.4e-09 1
TAIR|locus:2157146 - symbol:AT5G45580 species:3702 "Arabi... 157 7.1e-09 1
TIGR_CMR|NSE_0512 - symbol:NSE_0512 "response regulator/G... 163 7.4e-09 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 141 7.5e-09 1
UNIPROTKB|Q06065 - symbol:atoC "AtoC transcriptional acti... 163 7.5e-09 1
TAIR|locus:2045761 - symbol:AT2G01060 species:3702 "Arabi... 158 7.7e-09 1
TIGR_CMR|CHY_1367 - symbol:CHY_1367 "C4-dicarboxylate res... 151 9.3e-09 1
TAIR|locus:2172394 - symbol:MYR1 "myb-related protein 1" ... 161 9.4e-09 1
TIGR_CMR|ECH_1012 - symbol:ECH_1012 "DNA-binding response... 156 9.5e-09 1
TIGR_CMR|GSU_0963 - symbol:GSU_0963 "sigma-54 dependent D... 162 9.8e-09 1
TIGR_CMR|CHY_0092 - symbol:CHY_0092 "DNA-binding response... 153 9.8e-09 1
TAIR|locus:2026739 - symbol:AT1G69580 species:3702 "Arabi... 159 1.0e-08 1
TIGR_CMR|BA_4777 - symbol:BA_4777 "DNA-binding response r... 152 1.1e-08 1
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 151 1.1e-08 1
TIGR_CMR|GSU_2946 - symbol:GSU_2946 "DNA-binding heavy me... 151 1.1e-08 1
UNIPROTKB|Q45976 - symbol:divK "Cell division response re... 139 1.2e-08 1
TIGR_CMR|DET_0232 - symbol:DET_0232 "DNA-binding response... 151 1.4e-08 1
TIGR_CMR|BA_4920 - symbol:BA_4920 "DNA-binding response r... 151 1.5e-08 1
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 138 1.6e-08 1
TIGR_CMR|GSU_1286 - symbol:GSU_1286 "chemotaxis protein C... 138 1.6e-08 1
TIGR_CMR|GSU_2581 - symbol:GSU_2581 "sigma-54 dependent t... 160 1.6e-08 1
TIGR_CMR|GSU_1320 - symbol:GSU_1320 "sigma-54 dependent D... 160 1.6e-08 1
TIGR_CMR|BA_5661 - symbol:BA_5661 "DNA-binding response r... 148 1.8e-08 1
WARNING: Descriptions of 349 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 173/334 (51%), Positives = 228/334 (68%)
Query: 16 VIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75
V+D+FP+GMRVLAVDDDQTCL+IL+ L+ CQY VT TN+A TAL++LREN+N FDLVIS
Sbjct: 9 VLDQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVIS 68
Query: 76 DVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
DV MPDMDGFKLLELVGLEMDLPV+MLSA+SD K VMKG+ HGACDYLLKPVR+EELKN
Sbjct: 69 DVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNI 128
Query: 136 WQHVIRRKKVDPKDQNRS--PHEFEKSYRKRKDQXXXXXXXXXXXXXHENENSTTQKKPR 193
WQHV+R+ K+ N S +K+ RKRK+Q ++N++ T QKKPR
Sbjct: 129 WQHVVRKSKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERG---NDNDDPTAQKKPR 185
Query: 194 VVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKT 253
V+WT ELH KF+ AV+ LG+++AVPKKILDLMNV+ LTRENVASHLQKFR++LK++ +
Sbjct: 186 VLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVSDDA 245
Query: 254 LEAGMVASVGSKDSSYLRIGALDGFGGSHSVNXXXXXXXXXXXXXXXXXXMIGRLNSSAG 313
++ A++ DS ++++ + G GG + + M+ +S+
Sbjct: 246 IQQANRAAI---DSHFMQMNSQKGLGGFYHHHRGIPVGSGQFHGGTT---MMRHYSSNRN 299
Query: 314 LSMHGIASSGMIKPGLSQSFNTSFNTIGKNQQAM 347
L +GM +P +S SF + N G Q +
Sbjct: 300 LGRLNSLGAGMFQP-VSSSFPRNHNDGGNILQGL 332
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 187/372 (50%), Positives = 234/372 (62%)
Query: 17 IDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISD 76
+D+FP+GMRVLAVDDDQTCLKILE LR CQY VT TN+A AL++LREN+N FDLVISD
Sbjct: 10 LDQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISD 69
Query: 77 VYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136
V MPDMDGFKLLELVGLEMDLPV+MLSA+SD K VMKG+ HGACDYLLKPVR+EELKN W
Sbjct: 70 VDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIW 129
Query: 137 QHVIRRK---------KVDPKDQN------RSPHEFEKSYRKRKDQXXXXXXXXXXXXXH 181
QHV+R + D +D + S K RKRKDQ
Sbjct: 130 QHVVRSRFDKNRGSNNNGDKRDGSGNEGVGNSDQNNGKGNRKRKDQYNEDEDEDRD---- 185
Query: 182 ENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQK 241
+N++S QKK RVVWT ELH KF+ AVN LG +KA+PKKILDLMNVE LTRENVASHLQK
Sbjct: 186 DNDDSCAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQK 245
Query: 242 FRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGALDGFGGSH-SVNXXXXXXXXXXXXXXX 300
FRL LKR+ A A + + + ++++ LDGF V
Sbjct: 246 FRLYLKRISGV---ANQQAIMANSELHFMQMNGLDGFHHRPIPVGSGQYHGGAPAMRSFP 302
Query: 301 XXXMIGRLNSSAGLSMHGIASSGMIKPGLSQSFNTSFNTIGK-NQQAMFPANRNS--NLV 357
++GRLN+ +G+ + ++S G+ F + IGK + + P N + N++
Sbjct: 303 PNGILGRLNTPSGIGVRSLSSP---PAGM---FLQNQTDIGKFHHVSSLPLNHSDGGNIL 356
Query: 358 QGVQTSLEPNQM 369
QG+ LE +Q+
Sbjct: 357 QGLPMPLEFDQL 368
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 468 (169.8 bits), Expect = 3.8e-72, Sum P(2) = 3.8e-72
Identities = 91/144 (63%), Positives = 113/144 (78%)
Query: 7 GGSSS--DEDG----VIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITAL 60
GGSSS ++ G V++ FP G+RVL VDDD TCL ILE+ LR C YEVT NRA AL
Sbjct: 14 GGSSSGRNQGGGGETVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMAL 73
Query: 61 KMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGAC 120
+LR+N++ FD+VISDV+MPDMDGFKLLE VGLEMDLPV+M+SA +V+KG+ HGA
Sbjct: 74 SLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAV 133
Query: 121 DYLLKPVRMEELKNTWQHVIRRKK 144
DYL+KPVRME LKN WQHV+R+++
Sbjct: 134 DYLIKPVRMEALKNIWQHVVRKRR 157
Score = 284 (105.0 bits), Expect = 3.8e-72, Sum P(2) = 3.8e-72
Identities = 80/234 (34%), Positives = 118/234 (50%)
Query: 146 DPKDQNRSP----HEFEKSYRKRKDQXXXXXXXXXXXXXHENENSTTQKKPRVVWTTELH 201
D D N S + + S RKRKD+ ++E+++ KKPRVVW+ ELH
Sbjct: 194 DAVDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDD------KDEDASNLKKPRVVWSVELH 247
Query: 202 TKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEAGMVAS 261
+F+ AVN LG++KAVPKKIL+LMNV GLTRENVASHLQK+R+ L+RLG + G + +
Sbjct: 248 QQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGNLNN 307
Query: 262 --VGSKDSSYLRIGALDGFGGSHSVNXXXXXXXXXXXXXXXXXXMIGRLNSSAGLSMHGI 319
+ +D+S+ + L+GF + L A +S G+
Sbjct: 308 SFMTGQDASFGPLSTLNGF------DLQALAVTGQLPAQSLAQLQAAGLGRPAMVSKSGL 361
Query: 320 ASSGMIKPGLSQSFNTSFNTIGKN--QQAMFPANR-NSNLVQGVQTSLEPNQMP 370
S ++ SF+ + G+ P + NL+ GV T L+ Q+P
Sbjct: 362 PVSSIVDERSIFSFDNTKTRFGEGLGHHGQQPQQQPQMNLLHGVPTGLQ-QQLP 414
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 421 (153.3 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 81/137 (59%), Positives = 104/137 (75%)
Query: 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77
D+FP G+R+L VDDD +CL ILEK L Y+VT+ ++A AL +LRE +++FDLV+SDV
Sbjct: 5 DQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDV 64
Query: 78 YMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136
+MP M+G+ LL+ VGL EMDLPV+M+S T VM GINHGACDYL+KP+R EELKN W
Sbjct: 65 HMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIW 124
Query: 137 QHVIRRKKVDPKDQNRS 153
QHV+RRK V K+ S
Sbjct: 125 QHVVRRKCVMKKELRSS 141
Score = 240 (89.5 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 54/93 (58%), Positives = 65/93 (69%)
Query: 190 KKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRL 249
KK RVVW+ ELH +F+ AVN LG+DKAVPK+IL+LMNV GL+RENVASHLQKFRL LKRL
Sbjct: 199 KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258
Query: 250 GNKTLEAGMVASVGSKDSSYLRIGALDGFGGSH 282
+ ++ S +K Y I AL G H
Sbjct: 259 SGEASQSN--DSESTK--RYENIQALVSSGQLH 287
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 131/245 (53%), Positives = 164/245 (66%)
Query: 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMP 80
P+G+RVL VDDD T LKILEK L++C YEVT A AL++LRE ++ +D+VISDV MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 81 DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
DMDGFKLLE VGLE+DLPV+M+S +T VMKG+ HGACDYLLKP+RM+ELK WQHV+
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 141 RRKKVDPKDQNRSPHEFEKSYRKRKDQXXXXXXXXXXXXXHENEN--------------- 185
R+K + +D +E + R D+ + ++
Sbjct: 128 RKKLQEVRDIEGCGYEGGADWITRYDEAHFLGGGEDVSFGKKRKDFDFEKKLLQDESDPS 187
Query: 186 STTQKKPRVVWTTELHTKFIGAVNLLGLD-KAVPKKILDLMNVEGLTRENVASHLQKFRL 244
S++ KK RVVW+ ELH KF+ AVN +G D KA PKKILDLMNV LTRENVASHLQK+RL
Sbjct: 188 SSSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
Query: 245 SLKRL 249
L RL
Sbjct: 248 YLSRL 252
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 290 (107.1 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 55/132 (41%), Positives = 83/132 (62%)
Query: 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM 79
+P G+RVL +DDD + L ++E L +C Y+VT A+ + +N DLVISD +
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 80 PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
P DG +L+ V + +P V++++ DT VMK + +GA D+LLKPVR+EEL N WQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 140 IRRKKVDPKDQN 151
R++ D K+ N
Sbjct: 127 FRKQMQDHKNNN 138
Score = 203 (76.5 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 43/78 (55%), Positives = 54/78 (69%)
Query: 191 KPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLG 250
K R+ WTT+LH +FI AVN LG DKAVPKKIL +M V+ LTRE VASHLQK+R+ LK+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSI 257
Query: 251 NKTLEAGMVASVGSKDSS 268
T + G S + D +
Sbjct: 258 PTTSKHGATLSSTALDKT 275
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 290 (107.1 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 55/132 (41%), Positives = 83/132 (62%)
Query: 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM 79
+P G+RVL +DDD + L ++E L +C Y+VT A+ + +N DLVISD +
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 80 PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
P DG +L+ V + +P V++++ DT VMK + +GA D+LLKPVR+EEL N WQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 140 IRRKKVDPKDQN 151
R++ D K+ N
Sbjct: 127 FRKQMQDHKNNN 138
Score = 203 (76.5 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 43/78 (55%), Positives = 54/78 (69%)
Query: 191 KPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLG 250
K R+ WTT+LH +FI AVN LG DKAVPKKIL +M V+ LTRE VASHLQK+R+ LK+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSI 257
Query: 251 NKTLEAGMVASVGSKDSS 268
T + G S + D +
Sbjct: 258 PTTSKHGATLSSTALDKT 275
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 455 (165.2 bits), Expect = 6.3e-43, P = 6.3e-43
Identities = 96/191 (50%), Positives = 121/191 (63%)
Query: 7 GGSSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLREN 66
GGS+SD FP +RVL VDDD TCL ILE+ L C Y VT NRA +AL +LR+N
Sbjct: 17 GGSNSDP------FPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKN 70
Query: 67 RNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
+N FD+VISDV+MPDMDGFKLLE VGLEMDLPV+M+SA +V+KG+ HGA DYL+KP
Sbjct: 71 KNGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKP 130
Query: 127 VRMEELKNTWQHVIRRKKVDPKDQNRSPHEFEKSY--RKRKDQXXXXXXXXXXXXXHENE 184
VR+E LKN WQHV+R+K+ + S E + R R+ Q N
Sbjct: 131 VRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNG 190
Query: 185 NSTTQKKPRVV 195
S+ ++K V
Sbjct: 191 RSSRKRKEEEV 201
Score = 283 (104.7 bits), Expect = 6.5e-22, P = 6.5e-22
Identities = 88/243 (36%), Positives = 126/243 (51%)
Query: 141 RRKKVDPKDQNRSPHEFE-KSYRKRKDQXXXXXXXXXXXXXHENENSTTQKKPRVVWTTE 199
++ + D + + S +E +S RKRK++ + E+S++ KKPRVVW+ E
Sbjct: 172 QQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGD-------DKEDSSSLKKPRVVWSVE 224
Query: 200 LHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEAGMV 259
LH +F+ AVN LG+DKAVPKKIL++MNV GLTRENVASHLQK+R+ L+RLG G+
Sbjct: 225 LHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRLG------GVS 278
Query: 260 ASVGSKDSSYLRIGALDGFGGSHSVNXXXXXXXXXXXXXXXXXXMIGRLNSSAGLSMHGI 319
G+ + S++ G FG S+N + +L + AGL +
Sbjct: 279 QHQGNMNHSFMT-GQDQSFGPLSSLNGFDLQSLAVTGQLPPQS--LAQLQA-AGLGRPTL 334
Query: 320 ASSGM-IKPGLSQSFNTSFNTIGKNQQAMF-----PANRNSNLVQGVQTS----LEPNQM 369
A GM + P + Q + FN +N + F N NL+ GV T L P Q
Sbjct: 335 AKPGMSVSPLVDQ--RSIFNF--ENPKIRFGDGHGQTMNNGNLLHGVPTGSHMRLRPGQN 390
Query: 370 PQS 372
QS
Sbjct: 391 VQS 393
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 92/235 (39%), Positives = 137/235 (58%)
Query: 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM 79
FP G+RVL D+D + L ILE+ L++ QY+VT+ N A+ LR +RN FDL + V
Sbjct: 38 FPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNN 97
Query: 80 PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
+ D F+ L +G EMDLP++++S K V K + +GA DYL+KP+R E+L+ ++H+
Sbjct: 98 AEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHL 157
Query: 140 IR----RKKVDPKDQNRSPHEFEKSY--------RKRKDQXXXXXXXXXXXXXHENENS- 186
++ R+ V + ++ E S K K N+ +
Sbjct: 158 VKKMRERRSVVTGEAEKAAGEKSSSVGDSTIRNPNKSKRSSCLEAEVNEEDRHDHNDRAC 217
Query: 187 -TTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQ 240
++ KK RVVW ELH F+ AV+ LGL++AVPKKILD+M V+ ++RENVASHLQ
Sbjct: 218 ASSAKKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENVASHLQ 272
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 182 (69.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 185 NSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRL 244
N T++KK V WT ELH KF+ AV LG+D+A+P +IL+LM V LTR NVASHLQKFR
Sbjct: 292 NKTSRKK--VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQ 349
Query: 245 SLKRL 249
K +
Sbjct: 350 HRKNI 354
Score = 145 (56.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 42/132 (31%), Positives = 63/132 (47%)
Query: 18 DKFPIGMRVLAV------DDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFD 71
+ FP G++VL + D D + L Y VT AL + +N +F
Sbjct: 12 ENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFH 71
Query: 72 LVISDVYMP-DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRME 130
+ I +V M + + FK LE + LP +M+S MK I GA ++L KP+ E
Sbjct: 72 IAIVEVNMSAESESFKFLEAA--KDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPE 129
Query: 131 ELKNTWQHVIRR 142
+LKN WQHV+ +
Sbjct: 130 KLKNIWQHVVHK 141
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 255 (94.8 bits), Expect = 3.6e-19, P = 3.6e-19
Identities = 66/204 (32%), Positives = 107/204 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+RVL V+ D + +I+ LR+C Y+V + + A ++L+E +N DL+++++ +P +
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 84 GFKLLELVGLEMD----LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
GF LL LV +E + +PV+M+S+ K+V+K + GA DYL+KP+R ELKN WQHV
Sbjct: 97 GFALLALV-MEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHV 155
Query: 140 IRRKKV--DPKDQNRS-P---HEFEKSYRKRKDQXXXXXXXXXXXXXHEN-ENSTTQKKP 192
RR + DP +S P H E + +D + N N +
Sbjct: 156 WRRLTLRDDPTAHAQSLPASQHNLEDTDETCEDSRYHSDQGSGAQAINYNGHNKLMENGK 215
Query: 193 RVVWTTELHTKFIGAVNLLG-LDK 215
V E F ++L+G +DK
Sbjct: 216 SVDERDEFKETFDVTMDLIGGIDK 239
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 227 (85.0 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 44/74 (59%), Positives = 55/74 (74%)
Query: 182 ENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQK 241
E+ + T K+PR+VWT +LH +F+ V LG+ AVPK I+ LMNVEGLTRENVASHLQK
Sbjct: 132 EDASGKTSKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 191
Query: 242 FRLSLKRLGNKTLE 255
+RL LKR+ T E
Sbjct: 192 YRLYLKRIQGLTTE 205
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 217 (81.4 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 43/70 (61%), Positives = 55/70 (78%)
Query: 184 ENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFR 243
E + T K+PR+VWT +LH +F+ AV LG+ AVPK I+ LM+VEGLTRENVASHLQK+R
Sbjct: 98 EPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYR 157
Query: 244 LSLKRL--GN 251
L L+R+ GN
Sbjct: 158 LYLRRMQGGN 167
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 216 (81.1 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 48/88 (54%), Positives = 63/88 (71%)
Query: 183 NENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKF 242
+E + T K+PR+VWT +LH +F+ AV LG+ AVPK I+ LM+V+GLTRENVASHLQK+
Sbjct: 73 DEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 132
Query: 243 RLSLKRLGNKTLEAGMVASVGSKDSSYL 270
RL LKR+ K+ G GS DS +L
Sbjct: 133 RLYLKRM--KSGGGGG----GSGDSDHL 154
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 237 (88.5 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+RVL V++D I+ LR C YEV + I A K+L + N+ D+V+++V MP +
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137
Query: 84 GFKLL-ELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
G LL +++ + ++PV+M+S++ LV K ++ GA D+L+KP+R ELK WQHV
Sbjct: 138 GIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVW 197
Query: 141 RRKKVDPKDQNRS-PHEFEKSYR----KRKDQ 167
RR + + S H+ +KS + K+ DQ
Sbjct: 198 RRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQ 229
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 157 (60.3 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 35/126 (27%), Positives = 64/126 (50%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L +D D + L L++ V + A AL M+ + + L+I+++ MP +D
Sbjct: 15 ILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHIDSH 74
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145
L + L+ D+P+++++ TK + AC L KP+ +++KN WQHV +K
Sbjct: 75 SFLNALLLK-DIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVFSKKSQ 133
Query: 146 DPKDQN 151
+ K N
Sbjct: 134 ELKKIN 139
Score = 131 (51.2 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 182 ENENSTTQK---KPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASH 238
EN+ +K + + +W +E H KFI A+++LG + PK IL++MN LT V SH
Sbjct: 210 ENKRKEWKKSVGRRKSLWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSH 269
Query: 239 LQKFRLSLKRL 249
LQK++ + ++
Sbjct: 270 LQKYKAQIDQI 280
Score = 40 (19.1 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 429 SRDAYGNQSSL--TVASLNQAYFDLGVHDSSNF 459
S DA N L + +N A +D+ + D +F
Sbjct: 657 SYDALDNMVPLETNMEEMNDALYDISIEDLISF 689
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 226 (84.6 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 52/162 (32%), Positives = 88/162 (54%)
Query: 1 MTAEEKGGSSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITAL 60
+ E KGG DG ID+ + R+L D+D T L + L EC Y+VT A +
Sbjct: 3 LNGECKGG-----DGFIDRSRV--RILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVI 55
Query: 61 KMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINH 117
L + D++++++ +P G K+L + + DL PV+M+S + +V+K +
Sbjct: 56 DALNAEGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKL 115
Query: 118 GACDYLLKPVRMEELKNTWQHVIRRKKV-DPKDQNRSPHEFE 158
GA DYL+KP+R EL N W H+ RR+++ ++N ++F+
Sbjct: 116 GAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLSYDFD 157
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 215 (80.7 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 41/67 (61%), Positives = 54/67 (80%)
Query: 183 NENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKF 242
+E + T K+PR+VWT +LH +F+ AV LG+ AVPK I+ LM+V+GLTRENVASHLQK+
Sbjct: 97 DEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 156
Query: 243 RLSLKRL 249
RL LKR+
Sbjct: 157 RLYLKRM 163
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 208 (78.3 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 43/74 (58%), Positives = 54/74 (72%)
Query: 183 NENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKF 242
+EN +KKP+V WT ELH KF+ AV LG+DKAVP +IL++MNV+ LTR NVASHLQK+
Sbjct: 140 DENDI-KKKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKY 198
Query: 243 RLSLKRLGNKTLEA 256
R K L + EA
Sbjct: 199 RSHRKHLLAREAEA 212
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 181 (68.8 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 41/122 (33%), Positives = 67/122 (54%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
MR+L V+DD T K +E L V T+ + + + ++DL++ D+ +PDM+
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAK--LYDYDLILLDINLPDMN 58
Query: 84 GFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G ++L + + ++ P+++LS DT+ +KG GA DYL KP EEL +IRR
Sbjct: 59 GHEVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRR 118
Query: 143 KK 144
K
Sbjct: 119 SK 120
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 177 (67.4 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 46/130 (35%), Positives = 72/130 (55%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L V+DD T ++L L + Y++ + AL M R + + LVI DV +P MDG
Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPS--LVILDVMLPGMDG 62
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
F+L L+ E +P++ML+A S + G+ GA DYL KP M+EL + ++RR +
Sbjct: 63 FELCRLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQ 122
Query: 145 VDPKDQNRSP 154
+ QN P
Sbjct: 123 M----QNSQP 128
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 45/133 (33%), Positives = 74/133 (55%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
+ +R+L VDDD+ + L + L Y V + + + AL M+ +R D ++ DV MP
Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRP--DALVLDVMMPR 58
Query: 82 MDGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
+DG ++ +L G DLP+++L+A + G++ GA DYL KP +EEL + ++
Sbjct: 59 LDGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118
Query: 141 RRKKVDPKDQNRS 153
RR K P+D S
Sbjct: 119 RRTK--PEDAAES 129
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDDD + ++L LR ++ V AL +RE R DLV+ D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
+ ++ + +P+VML+A +DT V+ G+ GA DY++KP + +EL + +RR
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRND 124
Query: 145 VDPKD 149
+P +
Sbjct: 125 DEPAE 129
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 38/123 (30%), Positives = 70/123 (56%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+++L VDD++ L++L+ FL Y + ALK++ + +FD+++ DV MP+MD
Sbjct: 2 VKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQK--DFDIILLDVMMPNMD 59
Query: 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
G+ + ++P++ML+A + ++KG+ GA DY+ KP L + ++RR
Sbjct: 60 GWDTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRT 119
Query: 144 KVD 146
K D
Sbjct: 120 KKD 122
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 45/143 (31%), Positives = 79/143 (55%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPD 81
M++L ++DD ++ + L+ +VT+ +R + L+M+ E R N LVI D+ +PD
Sbjct: 1 MKILIIEDDYKIVQAISFALKIGWPDVTLLSASRGESGLRMIEEQRPN--LVILDLSLPD 58
Query: 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
MDG ++L+ L D P+++L+ S+ V++ + GA +Y++KP R EL + ++R
Sbjct: 59 MDGLEVLKDARLFCDTPIIILTVRSEESDVVEALELGANEYIIKPFRQMELLARIRCILR 118
Query: 142 RKKVDPKDQNRSPHEFEKSYRKR 164
R KD F+ Y KR
Sbjct: 119 RPITTSKDALLEWGPFKLDYFKR 141
>UNIPROTKB|P0A5Z6 [details] [associations]
symbol:prrA "Transcriptional regulatory protein PrrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
immune response" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
Length = 233
Score = 172 (65.6 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 45/120 (37%), Positives = 66/120 (55%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL VDDD L LE+ LR +EV AL+ ENR D ++ D+ MP +DG
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDG 66
Query: 85 FKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
++ L ++ D+PV +LSA S + G+ GA DYL+KP + EL + ++RR+
Sbjct: 67 VSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 172 (65.6 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 41/120 (34%), Positives = 69/120 (57%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VLAVDD ++ + LR +Y VT + AL++L +RN ++I+D MP+M GF
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRN-VHMIITDYCMPEMTGF 71
Query: 86 KLLELV--GLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
LL+ V E+ ++PVV++S+ + + + + GA D+L+KPVR ++ VI +
Sbjct: 72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRVIMK 131
>TIGR_CMR|BA_3900 [details] [associations]
symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
response regulator, putative" species:198094 "Bacillus anthracis
str. Ames" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
DNASU:1087972 EnsemblBacteria:EBBACT00000012233
EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
Length = 220
Score = 169 (64.5 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 40/119 (33%), Positives = 70/119 (58%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+LA+DD+ L I++ L + +EVT + +T K E ++DL++ DV MP++DG
Sbjct: 3 RILAIDDEDGILYIIKSALEKEGHEVTAVSNPLTIPK---EKFCHYDLILLDVMMPEIDG 59
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
F L + + +D P+V L+A + K ++ G++ G DY+ KP + EL+ +RR+
Sbjct: 60 FTLCKEIRDFVDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGIGELRARVSAHVRRE 118
>TIGR_CMR|SO_0622 [details] [associations]
symbol:SO_0622 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:Q9WYN0 RefSeq:NP_716255.1
ProteinModelPortal:Q8EJ51 GeneID:1168488 KEGG:son:SO_0622
PATRIC:23520932 OMA:PFHTQEL ProtClustDB:CLSK905847 Uniprot:Q8EJ51
Length = 224
Score = 169 (64.5 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 43/120 (35%), Positives = 70/120 (58%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M++L V+D+ + LEK L++ Y +T++A+ A +++E + +D VI D+ +PD +
Sbjct: 1 MKLLLVEDNPMLVSELEKQLKQAGYVTDITDKALEADYLVKETQ--YDCVILDIGLPDGN 58
Query: 84 GFKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G +LLE + PV+ML+A S ++G N GA DYL KP +EL Q +I R
Sbjct: 59 GLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHR 118
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 168 (64.2 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 34/131 (25%), Positives = 72/131 (54%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
+G ++L ++D++ + + L Y+V V L E +FDL++ D+ +P+
Sbjct: 1 MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEK--DFDLILLDLMLPE 58
Query: 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
MDGF++ + E ++M++A ++ G++ GA DY++KP +EEL + + R
Sbjct: 59 MDGFEITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFR 118
Query: 142 RKKVDPKDQNR 152
R++++ K + +
Sbjct: 119 RQEIETKTKEK 129
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 190 (71.9 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 36/74 (48%), Positives = 53/74 (71%)
Query: 183 NENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKF 242
+++S +KK +V WT ELH +F+ AV LG+DKAVP +IL++M ++ LTR N+ASHLQK+
Sbjct: 172 SKSSHGKKKAKVDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKY 231
Query: 243 RLSLKRLGNKTLEA 256
R K + + EA
Sbjct: 232 RSHRKHMIAREAEA 245
Score = 41 (19.5 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 4 EEKGGSSSDED 14
EEKGG + D+D
Sbjct: 124 EEKGGCNQDDD 134
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 188 (71.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 43/116 (37%), Positives = 67/116 (57%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDDD + IL+ LR Y V + N AL+ +RE FDLV+ DV M +MDG
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGI 65
Query: 86 KLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
L E+ L +PV++++AYS + ++ + GA DYL+KP+ + L+ T + +
Sbjct: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 167 (63.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 40/113 (35%), Positives = 67/113 (59%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENR-NNFDLVISDVYMPDM 82
M VLAVDD ++ K LR +Y VT A AL++L N +++I+D +MP M
Sbjct: 50 MHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIITDYWMPGM 109
Query: 83 DGFKLLELV--GLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
G++LL+ V ++ ++PVV++S+ + + + + GA D+LLKPVR ++
Sbjct: 110 TGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDV 162
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 171 (65.3 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 57/239 (23%), Positives = 111/239 (46%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQ-YE-VTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
++VL V+DD + +L + +E V N +A+++L E+R DLV+ D++MP+
Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLEESR--IDLVLLDIFMPE 59
Query: 82 MDGFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
GF+LL + E ++ ++M+SA D + K + +G DYL+KP E K +
Sbjct: 60 ETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALT-IY 118
Query: 141 RRKKVDPKDQNR-SPHEFEKSYRKRKDQXXXXXXXXXXXXXHENENSTTQKKPRV---VW 196
R K K+Q + S E + +++ + + QK + V+
Sbjct: 119 REKLTFMKEQQKISQSELDSLILQKEKREPTVTKELPKGLTKQTLQLIWQKIESLNGRVF 178
Query: 197 TTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLE 255
TT+ + +G + ++ K ++ L ++ L E + H+ + L+ + K +E
Sbjct: 179 TTDEMAQLVGISRV-----SIRKYVMFLTDIGVLENEMMYQHVGRPVSKLRCVDQKKIE 232
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 163 (62.4 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 44/121 (36%), Positives = 63/121 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL VDDD L +L L EVT +R A+ ++R + FD+VI+D MP M+
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVR--KTTFDMVITDFSMPGMN 61
Query: 84 GFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G +L V L DLPV+M++ + L+ + G C L KPV + L +H RR
Sbjct: 62 GLELAAAVKELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRHFSRR 121
Query: 143 K 143
K
Sbjct: 122 K 122
>TAIR|locus:2093726 [details] [associations]
symbol:AT3G24120 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] [GO:0010048 "vernalization
response" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00531757
RefSeq:NP_974356.1 UniGene:At.26588 ProteinModelPortal:F4J5D9
SMR:F4J5D9 EnsemblPlants:AT3G24120.2 GeneID:821998
KEGG:ath:AT3G24120 OMA:NLPGDAC PhylomeDB:F4J5D9 Uniprot:F4J5D9
Length = 298
Score = 178 (67.7 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 43/84 (51%), Positives = 56/84 (66%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRLS 245
TT KPR+ WTTELH +F+ AV LG DKA PK I+ M V+GLT ++ SHLQKFRL
Sbjct: 37 TTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLG 96
Query: 246 LKRLGNKTLEAGMVAS-VG-SKDS 267
++ G ++ E AS VG S+D+
Sbjct: 97 -RQAGKESTENSKDASCVGESQDT 119
>TAIR|locus:2119425 [details] [associations]
symbol:UNE16 "unfertilized embryo sac 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009567 "double fertilization forming a
zygote and endosperm" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009567
IPI:IPI00657591 RefSeq:NP_001031626.1 UniGene:At.22199
ProteinModelPortal:F4JTR5 SMR:F4JTR5 PRIDE:F4JTR5
EnsemblPlants:AT4G13640.2 GeneID:826998 KEGG:ath:AT4G13640
OMA:LPIDACL PhylomeDB:F4JTR5 Uniprot:F4JTR5
Length = 295
Score = 176 (67.0 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 44/95 (46%), Positives = 57/95 (60%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRL- 244
TT KPR+ WT+ELH +F+ AV LG DKA PK I+ M V+GLT ++ SHLQKFRL
Sbjct: 33 TTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLG 92
Query: 245 --SLKRLGNKTLEAGMVAS---VGSKDSSYLRIGA 274
S K + + + VA GS +S LR+ A
Sbjct: 93 RQSCKESIDNSKDVSCVAESQDTGSSSTSSLRLAA 127
>TIGR_CMR|SPO_0251 [details] [associations]
symbol:SPO_0251 "DNA-binding response regulator PetR"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 KO:K07659 RefSeq:YP_165515.1
ProteinModelPortal:Q5LX38 GeneID:3196152 KEGG:sil:SPO0251
PATRIC:23373753 OMA:DRGQAQE ProtClustDB:CLSK933195 Uniprot:Q5LX38
Length = 233
Score = 166 (63.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 43/129 (33%), Positives = 68/129 (52%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDDD+ +L+KFL + VT A A ++L + +FDL++ DV MP DG
Sbjct: 8 LLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRIL--SGLDFDLIVMDVMMPGEDGV 65
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145
L + + P+++L+A +T+ + G+ GA DYL KP EL ++RR
Sbjct: 66 SLTRALRQTLSTPILLLTARGETEHRIAGLEAGADDYLAKPFEPRELLLRINAILRRVP- 124
Query: 146 DPKDQNRSP 154
D Q+ +P
Sbjct: 125 DTSAQDAAP 133
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 162 (62.1 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 39/124 (31%), Positives = 67/124 (54%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M+VL V+D++ +++ L E +YEV LKM + +DL++ DV +P D
Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDK--GYDLIVLDVMLPKKD 58
Query: 84 GFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G ++ EL + PV+ML+A + ++ G++ G+ DYL KP EL + ++RR
Sbjct: 59 GLSVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRR 118
Query: 143 KKVD 146
+ D
Sbjct: 119 SEQD 122
>TAIR|locus:2087740 [details] [associations]
symbol:AT3G12730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY070764
EMBL:AY143916 IPI:IPI00519091 RefSeq:NP_187879.2 UniGene:At.28330
ProteinModelPortal:Q8VYI2 SMR:Q8VYI2 EnsemblPlants:AT3G12730.1
GeneID:820455 KEGG:ath:AT3G12730 TAIR:At3g12730 eggNOG:NOG317938
InParanoid:Q8VYI2 OMA:CETQEAS PhylomeDB:Q8VYI2
ProtClustDB:CLSN2917937 Genevestigator:Q8VYI2 Uniprot:Q8VYI2
Length = 235
Score = 164 (62.8 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRL 244
TT KPR+ WTTELH +F+ AV LG +KA PK I+ +M V+GLT ++ SHLQKFRL
Sbjct: 19 TTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 153 (58.9 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 36/116 (31%), Positives = 64/116 (55%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
I ++L VDD++ L K L +EV + AL L++ N ++++D+ MP+
Sbjct: 5 IKKKILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQREVN--VIVTDINMPE 62
Query: 82 MDGFKLLELVGLEMDLP---VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
M+G L L P V+M++AY + ++ +N GA +Y+ KPV+++ELK+
Sbjct: 63 MNGITFLR--ELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKS 116
>TIGR_CMR|BA_1119 [details] [associations]
symbol:BA_1119 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843605.1 RefSeq:YP_017739.1 RefSeq:YP_027312.1
ProteinModelPortal:Q81TY2 DNASU:1089077
EnsemblBacteria:EBBACT00000010696 EnsemblBacteria:EBBACT00000017772
EnsemblBacteria:EBBACT00000019871 GeneID:1089077 GeneID:2819546
GeneID:2850009 KEGG:ban:BA_1119 KEGG:bar:GBAA_1119 KEGG:bat:BAS1040
OMA:EIDQHSA ProtClustDB:CLSK916099
BioCyc:BANT260799:GJAJ-1116-MONOMER
BioCyc:BANT261594:GJ7F-1167-MONOMER Uniprot:Q81TY2
Length = 234
Score = 163 (62.4 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 41/135 (30%), Positives = 69/135 (51%)
Query: 26 VLAVDDDQTCLKILEKFL-RECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+L VDD+ L++L L +E +T A AL + ++N ++DL+I DV +P G
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQN--DYDLIILDVMLPGQSG 63
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR-- 142
F + ++ + D P+ L+A + + G +HGA DY+ KP E+ + +RR
Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123
Query: 143 KKVDPKDQNRSPHEF 157
K+V P +Q F
Sbjct: 124 KQVMPHEQKAHSSSF 138
>TIGR_CMR|CJE_1358 [details] [associations]
symbol:CJE_1358 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 PIR:A81329 RefSeq:YP_179345.1
ProteinModelPortal:Q5HTP0 STRING:Q5HTP0 GeneID:3231864
KEGG:cjr:CJE1358 PATRIC:20044514 OMA:ACIFEEI ProtClustDB:CLSK879148
BioCyc:CJEJ195099:GJC0-1384-MONOMER Uniprot:Q5HTP0
Length = 221
Score = 152 (58.6 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 40/119 (33%), Positives = 66/119 (55%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L ++DD + +I+E+FL + YEV + + A AL M E FDL I DV +P DG
Sbjct: 4 KILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERY--FDLWILDVKVPLGDG 61
Query: 85 FKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
F LL EL P + +++ + T + +G + G DY+ KP + EL + +++R
Sbjct: 62 FSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKR 120
Score = 43 (20.2 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 433 YGNQSSLTVASLNQAYFDLGVHDSSNFLDHGRC-QESW 469
Y N +LT+ S L + + +NFL R +E W
Sbjct: 146 YHNNKALTLPSKEIKLLSLLLKNKNNFLSTERIFEELW 183
Score = 43 (20.2 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 438 SLTVASLNQAYFDLGVHDSSNFLDHGR-CQESWQDAVQLSKSSSISLPLGEPFILDQVPP 496
S+ V +L + F H + +F D G + + + + +++LP E +L +
Sbjct: 111 SIRVKALLKRAFS---HKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIKLLSLLLK 167
Query: 497 NKDNILSS 504
NK+N LS+
Sbjct: 168 NKNNFLST 175
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 164 (62.8 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 44/120 (36%), Positives = 69/120 (57%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
MR+L V+DDQ + L++ L + V +R AL L + D+VI D+ +PD+D
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSH--DMVILDLGLPDID 58
Query: 84 GFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G +L E+ + DLPV++L+A +KG+++GA DYL KP M+EL + + RR
Sbjct: 59 GLLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERR 118
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 159 (61.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 42/121 (34%), Positives = 69/121 (57%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMPDMDG 84
+L VDDD +++ FL EC E T AI L L++ N+ D+VI D+ MP+MDG
Sbjct: 8 ILIVDDDPHIRELVSVFL-EC--EGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDG 64
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
F + + D+P+++L+A +T +KG + G DYL+KP EL + +++R +
Sbjct: 65 FDVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 124
Query: 145 V 145
+
Sbjct: 125 I 125
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 149 (57.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 37/123 (30%), Positives = 66/123 (53%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L VDD T +I++ LR+ + T + +TAL ML+ + +FD V++D MP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 83 DGFKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
G LL+ + + +L PV+M++A + + +++ G Y++KP LK +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 140 IRR 142
R
Sbjct: 127 FER 129
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 149 (57.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 37/123 (30%), Positives = 66/123 (53%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L VDD T +I++ LR+ + T + +TAL ML+ + +FD V++D MP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 83 DGFKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
G LL+ + + +L PV+M++A + + +++ G Y++KP LK +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 140 IRR 142
R
Sbjct: 127 FER 129
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 149 (57.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 41/123 (33%), Positives = 70/123 (56%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLR-ENRNN----FD-----LV 73
+ VLAVDD K +E+ LR +VTV + A AL+ L + NN F+ L+
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLI 84
Query: 74 ISDVYMPDMDGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRME 130
++D MP M G++LL+ + ++PVV++S+ + + + + GA D+LLKPV++
Sbjct: 85 MTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLA 144
Query: 131 ELK 133
++K
Sbjct: 145 DVK 147
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 149 (57.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 41/125 (32%), Positives = 69/125 (55%)
Query: 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKML----RENRNNFD----- 71
P + VLAVDD K +E+ LR +VTV + A AL+ L E F+
Sbjct: 22 PDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVN 81
Query: 72 LVISDVYMPDMDGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
L+++D MP M G++LL+ + ++PVV++S+ + + + + GA D+LLKPV+
Sbjct: 82 LIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVK 141
Query: 129 MEELK 133
+ ++K
Sbjct: 142 LSDVK 146
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 158 (60.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 35/133 (26%), Positives = 73/133 (54%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
+G R+L V+D++ ++++ L YE + A++ N+DL++ DV +P+
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKF--GNGNWDLILLDVMLPN 58
Query: 82 MDGFKLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
+ G ++L + L+ +P+++L+A + G++ GA DY+ KP ++EEL + +
Sbjct: 59 ISGLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118
Query: 141 RRKKVDPKDQNRS 153
R V +++N S
Sbjct: 119 RISNVVKEEENSS 131
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 157 (60.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 37/118 (31%), Positives = 62/118 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL VDD+ +++ +L YE ALK L + ++D V+ D+ MP+MDG
Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETD--HYDFVVLDIMMPEMDG 62
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+ + + D+P++ L+A + + G+ GA DY++KP EL + V+RR
Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120
>TAIR|locus:2206415 [details] [associations]
symbol:APL "ALTERED PHLOEM DEVELOPMENT" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010088 "phloem development"
evidence=IMP] [GO:0010089 "xylem development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0010089 EMBL:AC007202 EMBL:AY045662 EMBL:AY143841
EMBL:AK316719 IPI:IPI00538563 IPI:IPI00542908 PIR:D96825
RefSeq:NP_565209.1 RefSeq:NP_849905.1 UniGene:At.23550 HSSP:O49397
ProteinModelPortal:Q9SAK5 SMR:Q9SAK5 IntAct:Q9SAK5 STRING:Q9SAK5
PRIDE:Q9SAK5 EnsemblPlants:AT1G79430.2 GeneID:844281
KEGG:ath:AT1G79430 TAIR:At1g79430 eggNOG:NOG261203
HOGENOM:HOG000239390 InParanoid:Q94AW3 OMA:CQTLAGE PhylomeDB:Q9SAK5
ProtClustDB:CLSN2689327 Genevestigator:Q9SAK5 GO:GO:0010088
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 Uniprot:Q9SAK5
Length = 358
Score = 167 (63.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 39/79 (49%), Positives = 50/79 (63%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRLS 245
TT KPR+ WT ELH +F+ AV LG DKA PK I+ +M V+GLT ++ SHLQKFRL
Sbjct: 30 TTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
Query: 246 L---KRLGNKTLEAGMVAS 261
K G+ + + G AS
Sbjct: 90 KQPHKEYGDHSTKEGSRAS 108
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 169 (64.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 44/128 (34%), Positives = 70/128 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD+ +L L + +V + ALK+L + + DLVISD MP MDG
Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQE--DIDLVISDWRMPGMDGP 62
Query: 86 KLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
+LL E+ LPV++++AYS K ++ + +GA DY+ KP ++EL T ++ +
Sbjct: 63 QLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRD 122
Query: 145 VDPKDQNR 152
+ KD R
Sbjct: 123 I-LKDNQR 129
>TIGR_CMR|BA_0651 [details] [associations]
symbol:BA_0651 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843182.1
RefSeq:YP_017279.1 RefSeq:YP_026895.1 ProteinModelPortal:Q81V49
DNASU:1088070 EnsemblBacteria:EBBACT00000008363
EnsemblBacteria:EBBACT00000015665 EnsemblBacteria:EBBACT00000022532
GeneID:1088070 GeneID:2814886 GeneID:2850289 KEGG:ban:BA_0651
KEGG:bar:GBAA_0651 KEGG:bat:BAS0618 OMA:LWDEAKH
ProtClustDB:CLSK915873 BioCyc:BANT260799:GJAJ-677-MONOMER
BioCyc:BANT261594:GJ7F-704-MONOMER Uniprot:Q81V49
Length = 225
Score = 157 (60.3 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 37/117 (31%), Positives = 64/117 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD+ L++L +L Y A+ + EN+N F ++ D+ MP MDG+
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHI-ENQN-FKFILLDIMMPKMDGW 61
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+ + + ++P++M++A T V++G+ GA DY+ KP EEL + V+RR
Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 147 (56.8 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNN-FDLVISDVYMPDM 82
M+VL VDD T + ++ + +EV A+ L+ L + N FDL+ DV MP M
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEV---EEAVNGLEALEKVLNGEFDLMTVDVNMPKM 57
Query: 83 DGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
DG+ + V + + LPV+++S S +KG+ GA YL+KPV E++
Sbjct: 58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 147 (56.8 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNN-FDLVISDVYMPDM 82
M+VL VDD T + ++ + +EV A+ L+ L + N FDL+ DV MP M
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEV---EEAVNGLEALEKVLNGEFDLMTVDVNMPKM 57
Query: 83 DGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
DG+ + V + + LPV+++S S +KG+ GA YL+KPV E++
Sbjct: 58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|BA_1497 [details] [associations]
symbol:BA_1497 "DNA-binding response regulator ResD"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009060 "aerobic respiration"
evidence=ISS] [GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_843949.1
RefSeq:YP_018120.1 RefSeq:YP_027655.1 ProteinModelPortal:Q81SZ6
DNASU:1087158 EnsemblBacteria:EBBACT00000009602
EnsemblBacteria:EBBACT00000013896 EnsemblBacteria:EBBACT00000020931
GeneID:1087158 GeneID:2818509 GeneID:2850870 KEGG:ban:BA_1497
KEGG:bar:GBAA_1497 KEGG:bat:BAS1386 KO:K07775 OMA:VWHYEFF
ProtClustDB:CLSK873069 BioCyc:BANT260799:GJAJ-1460-MONOMER
BioCyc:BANT261594:GJ7F-1522-MONOMER Uniprot:Q81SZ6
Length = 238
Score = 159 (61.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 36/118 (30%), Positives = 66/118 (55%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD+ ++L+ +L QY + + TAL+M +N ++DL++ D+ MP DG
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQN--DYDLILLDLMMPGKDG 63
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
++ + V + P++ML+A + ++G G DY++KP E+ + V+RR
Sbjct: 64 IEVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>TIGR_CMR|BA_0571 [details] [associations]
symbol:BA_0571 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
DNASU:1087909 EnsemblBacteria:EBBACT00000010289
EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
Length = 223
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 37/120 (30%), Positives = 72/120 (60%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
MR+L V+D+ + L+ + + L + ++EV L + +N +D ++ DV MP+MD
Sbjct: 1 MRLLVVEDNASLLESIVQILCD-EFEVDTALNGEDGLFLALQNI--YDAILLDVMMPEMD 57
Query: 84 GFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
GF++++ + E ++ PV+ L+A + +KG++ G DY++KP + ELK + ++RR
Sbjct: 58 GFEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>UNIPROTKB|A5U0E5 [details] [associations]
symbol:phoP "Putative two component system response
transcriptional positive regulator PhoP" species:419947
"Mycobacterium tuberculosis H37Ra" [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 EMBL:CP000611
GenomeReviews:CP000611_GR HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_001282057.1 ProteinModelPortal:A5U0E5 SMR:A5U0E5
STRING:A5U0E5 PRIDE:A5U0E5 EnsemblBacteria:EBMYCT00000067475
GeneID:5215306 KEGG:mra:MRA_0767 PATRIC:18141256 OMA:KPRILDH
ProtClustDB:CLSK790716 BioCyc:MTUB419947:GJ8N-786-MONOMER
Uniprot:A5U0E5
Length = 247
Score = 160 (61.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 45/120 (37%), Positives = 66/120 (55%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
RVL VDD+ +++L L+ +EV T TN A AL RE R D VI DV MP MD
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGA-QALDRARETRP--DAVILDVMMPGMD 78
Query: 84 GFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
GF +L + + +D P + L+A + + G+ G DY+ KP +EE+ + ++RR
Sbjct: 79 GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138
>UNIPROTKB|P71814 [details] [associations]
symbol:phoP "Possible two component system response
transcriptional positive regulator PhoP" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0009247 "glycolipid biosynthetic process"
evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0044315
"protein secretion by the type VII secretion system" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045892 GO:GO:0045893
GO:GO:0009405 GO:GO:0006979 GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0009247 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 GO:GO:0044315 KO:K02483
OMA:KPRILDH ProtClustDB:CLSK790716 EMBL:AL123456 PIR:H70705
RefSeq:NP_215271.1 RefSeq:YP_006514104.1 PDB:3R0J PDBsum:3R0J
ProteinModelPortal:P71814 SMR:P71814
EnsemblBacteria:EBMYCT00000002360 GeneID:13318651 GeneID:888772
KEGG:mtu:Rv0757 KEGG:mtv:RVBD_0757 PATRIC:18150200
TubercuList:Rv0757 Uniprot:P71814
Length = 247
Score = 160 (61.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 45/120 (37%), Positives = 66/120 (55%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
RVL VDD+ +++L L+ +EV T TN A AL RE R D VI DV MP MD
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGA-QALDRARETRP--DAVILDVMMPGMD 78
Query: 84 GFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
GF +L + + +D P + L+A + + G+ G DY+ KP +EE+ + ++RR
Sbjct: 79 GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 146 (56.5 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
RVL VDD +++ L + YEV A++M +E + D+V D+ MP+MD
Sbjct: 4 RVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP--DVVTMDITMPEMD 61
Query: 84 GFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G + + E+ ++ + ++M SA LVM+ I GA D+++KP + + + ++ ++R
Sbjct: 62 GIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEKTLKR 121
>TIGR_CMR|CPS_1750 [details] [associations]
symbol:CPS_1750 "transcriptional regulatory protein CpxR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
toxic substance" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
KEGG:cps:CPS_1750 PATRIC:21466667
BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
Length = 242
Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 37/117 (31%), Positives = 66/117 (56%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L +DDD ++L ++L ++VT + L ++ +FDL++ DV MP ++GF
Sbjct: 11 ILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAFDD--SFDLILLDVMMPILNGF 68
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
++L+ +G P++ML+A D + G+ GA DYL KP + EL + ++RR
Sbjct: 69 EVLKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILRR 125
>TIGR_CMR|BA_5275 [details] [associations]
symbol:BA_5275 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_847454.1
RefSeq:YP_021932.1 ProteinModelPortal:Q81XG2 DNASU:1084753
EnsemblBacteria:EBBACT00000010296 EnsemblBacteria:EBBACT00000014121
GeneID:1084753 GeneID:2818753 KEGG:ban:BA_5275 KEGG:bar:GBAA_5275
PATRIC:18788180 OMA:NANILQF ProtClustDB:CLSK917582
BioCyc:BANT261594:GJ7F-5148-MONOMER Uniprot:Q81XG2
Length = 221
Score = 155 (59.6 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 30/117 (25%), Positives = 64/117 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L ++D+ +++ +FL + V V + + + +N++DLV+ DV +PD+DG+
Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQ--KNSYDLVLLDVMLPDIDGY 61
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+ +++ + D+P++ML+ + + +KG G DY+ KP + V+RR
Sbjct: 62 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRR 118
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 171 (65.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 41/129 (31%), Positives = 68/129 (52%)
Query: 18 DKF-PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISD 76
D++ P +R+L DDD KIL L++ Y VT+ A + + + + +DLV++D
Sbjct: 153 DEYSPSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTD 212
Query: 77 VYMPDMDGFKLLELVG---LEMDLPVVMLSAYS-DTKLVMKGINHGACDYLLKPVRMEEL 132
V MP + GF LL+ + + +PV+++S + D K I G D+L KP+ E L
Sbjct: 213 VMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKELL 272
Query: 133 KNTWQHVIR 141
K V++
Sbjct: 273 KKKIDTVLQ 281
>TIGR_CMR|CHY_0606 [details] [associations]
symbol:CHY_0606 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
KEGG:chy:CHY_0606 PATRIC:21274355
BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
Length = 226
Score = 156 (60.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L V+DDQ K L L+ Y+ A++ R NFDLVI D+ +P DG
Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFY--RENFDLVILDLNLPKQDG 60
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
F +L+ + D+PV++L+A + + G G DYL KP EL + V+RR
Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRR 118
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 145 (56.1 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 39/119 (32%), Positives = 64/119 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VLAVDD + +++ L++ YEV AL ++ R FD++ISDV MP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKAR--FDVIISDVNMPVMTG 66
Query: 85 FKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
F+ ++ V ++ P++ML+ + + +G GA +L+KP E L T Q V+
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 145 (56.1 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 39/119 (32%), Positives = 64/119 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VLAVDD + +++ L++ YEV AL ++ R FD++ISDV MP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKAR--FDVIISDVNMPVMTG 66
Query: 85 FKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
F+ ++ V ++ P++ML+ + + +G GA +L+KP E L T Q V+
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125
>TAIR|locus:2095933 [details] [associations]
symbol:MYR2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011698
ProtClustDB:CLSN2686543 IPI:IPI00524229 RefSeq:NP_001118567.1
UniGene:At.40915 ProteinModelPortal:Q9SQQ9 SMR:Q9SQQ9
EnsemblPlants:AT3G04030.3 GeneID:819558 KEGG:ath:AT3G04030
TAIR:At3g04030 InParanoid:Q9SQQ9 OMA:HITSERH PhylomeDB:Q9SQQ9
Genevestigator:Q9SQQ9 Uniprot:Q9SQQ9
Length = 394
Score = 165 (63.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRLS 245
+T KPR+ WT +LH +FI AVN LG DKA PK I+ +M + GLT ++ SHLQK+RLS
Sbjct: 41 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS 100
Query: 246 LKRLGNK 252
K L +
Sbjct: 101 -KNLNGQ 106
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 155 (59.6 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 42/140 (30%), Positives = 76/140 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+D+ + + L E +V LK ++ + DLVI+D+ MP MDG
Sbjct: 10 ILVVEDEVKARESMINILSERFSKVIGAQNGDEGLKKFKKFKP--DLVITDIAMPIMDGL 67
Query: 86 KLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
+ E+ + D+P+V+LSAYS+ + +++ I+ G YL+KPV +EEL ++I +K
Sbjct: 68 DMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGIDKYLIKPVDIEELFKVLDYLIG-EK 126
Query: 145 VDPKDQNRSPHEFEKSYRKR 164
++ + E++ + KR
Sbjct: 127 IEANMLVKISEEYQFNKTKR 146
>TIGR_CMR|DET_1058 [details] [associations]
symbol:DET_1058 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_181773.1
ProteinModelPortal:Q3Z7M6 STRING:Q3Z7M6 GeneID:3229632
KEGG:det:DET1058 PATRIC:21609161 OMA:ISGWDVC ProtClustDB:CLSK837116
BioCyc:DETH243164:GJNF-1059-MONOMER Uniprot:Q3Z7M6
Length = 227
Score = 155 (59.6 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 37/126 (29%), Positives = 67/126 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L DD+ +IL+ +L ++V+VT AL RE N DL+I D+ +P++ G
Sbjct: 4 KILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREE--NPDLIILDLMLPEISG 61
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
+ + + E +P++ML+A + + G+ GA DY+ KP +EL + +RR +
Sbjct: 62 WDVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSE 121
Query: 145 VDPKDQ 150
P +
Sbjct: 122 HTPASE 127
>UNIPROTKB|Q9AE24 [details] [associations]
symbol:rprY "Transcriptional regulatory protein RprY"
species:295405 "Bacteroides fragilis YCH46" [GO:0000160
"phosphorelay signal transduction system" evidence=NAS] [GO:0003677
"DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
Length = 236
Score = 156 (60.0 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 36/120 (30%), Positives = 64/120 (53%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+R+L +DD+ +L ++L+ Y + K +N+ +DL + DV MP D
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNK--YDLCVFDVMMPKKD 65
Query: 84 GFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
GF L + V ++P++ L+A + + +++G GA DY+ KP MEEL + ++RR
Sbjct: 66 GFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 165 (63.1 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 46/140 (32%), Positives = 75/140 (53%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL VDD+ + + L L Y V A AL L R +DLVISDV MP +D
Sbjct: 3 IHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLE--RKTYDLVISDVKMPGLD 60
Query: 84 GFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G LL + + D V++++A+S + ++ + GA DY+ KP ++EE+K ++ + +
Sbjct: 61 GITLLGRIKEMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALEK 120
Query: 143 KKVDPKDQN-RSPHEFEKSY 161
+ D K +N R E ++ Y
Sbjct: 121 R--DLKRENLRLRQEVQERY 138
>TIGR_CMR|SO_4633 [details] [associations]
symbol:SO_4633 "transcriptional regulatory protein OmpR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
Length = 241
Score = 156 (60.0 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 41/123 (33%), Positives = 64/123 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDDD +LE++L E Y+V A ++L R NF L++ D+ +P DG
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLE--RENFHLIVLDLMLPGEDG 64
Query: 85 FKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
+ + + +P+VML+A D + G+ GA DYL KP EL + V+RR+
Sbjct: 65 LSICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
Query: 144 KVD 146
D
Sbjct: 125 TQD 127
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 165 (63.1 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 39/120 (32%), Positives = 63/120 (52%)
Query: 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
G +V VDD+ IL+ L + Y I AL L R +FDLV+ D+ MP M
Sbjct: 3 GYKVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALE--RESFDLVLLDIRMPRM 60
Query: 83 DGFKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
DG ++LE + DL V+M++A+ + ++ + GA DY+ KP +++K + I+
Sbjct: 61 DGIEVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIQ 120
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 142 (55.0 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 37/123 (30%), Positives = 64/123 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L VDD T +I++ LR+ + T + +TAL ML+ FD +++D MP M
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQSGA--FDFLVTDWNMPGM 58
Query: 83 DGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
G LL V + LPV+M++A + + +++ G Y++KP + LK + +
Sbjct: 59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 140 IRR 142
R
Sbjct: 119 FER 121
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 142 (55.0 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 36/117 (30%), Positives = 62/117 (52%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL VDD ++ L VT + AL L ++ ++ D+++SD MPDM G+
Sbjct: 6 VLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFL-DSEHDVDMIVSDYCMPDMTGY 64
Query: 86 KLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
LL V LPVV+ S+ + + + K ++ GA DY+LKPV++ ++ +++
Sbjct: 65 NLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMKYI 121
>TIGR_CMR|BA_0924 [details] [associations]
symbol:BA_0924 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605
GO:GO:0001071 HOGENOM:HOG000034816 HSSP:P52934 RefSeq:NP_843430.1
RefSeq:YP_017559.1 RefSeq:YP_027146.1 ProteinModelPortal:Q81UF3
DNASU:1088846 EnsemblBacteria:EBBACT00000010567
EnsemblBacteria:EBBACT00000014513 EnsemblBacteria:EBBACT00000020811
GeneID:1088846 GeneID:2817504 GeneID:2850213 KEGG:ban:BA_0924
KEGG:bar:GBAA_0924 KEGG:bat:BAS0870 KO:K11638 OMA:GEKMGAS
ProtClustDB:CLSK886856 BioCyc:BANT260799:GJAJ-950-MONOMER
BioCyc:BANT261594:GJ7F-988-MONOMER Uniprot:Q81UF3
Length = 225
Score = 153 (58.9 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 37/124 (29%), Positives = 71/124 (57%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMPDM 82
++V +DD +I E+FL + + +V V +A+ A + + R DL++ D Y+PD
Sbjct: 2 LKVAIAEDDFRVAQIQEEFLLKIK-DVKVMGKALNAKETMELLQREEIDLLLLDNYLPDG 60
Query: 83 DGFKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
G LL + E ++ V+M++A ++ ++ K I +G +YL+KPV +E+ T + R
Sbjct: 61 IGTDLLPQIHAEFPNVDVIMVTAANENHMLEKAIRNGVSNYLIKPVTLEKFVRTIEDYKR 120
Query: 142 RKKV 145
+K++
Sbjct: 121 KKQL 124
>TIGR_CMR|BA_4833 [details] [associations]
symbol:BA_4833 "DNA-binding response regulator PhoP"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07658
RefSeq:NP_847036.1 RefSeq:YP_021478.1 RefSeq:YP_030731.1
ProteinModelPortal:Q81L01 SMR:Q81L01 DNASU:1086976
EnsemblBacteria:EBBACT00000010602 EnsemblBacteria:EBBACT00000014654
EnsemblBacteria:EBBACT00000019808 GeneID:1086976 GeneID:2814633
GeneID:2851563 KEGG:ban:BA_4833 KEGG:bar:GBAA_4833 KEGG:bat:BAS4484
OMA:LYLGRHK ProtClustDB:CLSK887707
BioCyc:BANT260799:GJAJ-4541-MONOMER
BioCyc:BANT261594:GJ7F-4695-MONOMER Uniprot:Q81L01
Length = 239
Score = 155 (59.6 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 39/127 (30%), Positives = 70/127 (55%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD++ L ++E L++ +EV AL+ R DL+I D+ +P MDG
Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERP--DLIILDLMLPKMDG 61
Query: 85 FKLLELVGLEMDL-PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
++ + + L+ + P++ML+A D + G+ GA DY+ KP E+ + ++RR
Sbjct: 62 MEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121
Query: 144 KVDPKDQ 150
K+ ++Q
Sbjct: 122 KLQQEEQ 128
>TAIR|locus:2157146 [details] [associations]
symbol:AT5G45580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00931042
RefSeq:NP_199371.2 UniGene:At.50506 ProteinModelPortal:F4KEK2
SMR:F4KEK2 PRIDE:F4KEK2 DNASU:834596 EnsemblPlants:AT5G45580.1
GeneID:834596 KEGG:ath:AT5G45580 OMA:YQIEVQR Uniprot:F4KEK2
Length = 264
Score = 157 (60.3 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRLS 245
T KPR+ WT +LH +F+ AV LG DKA PK +L LM ++GLT ++ SHLQK+RL
Sbjct: 3 TRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRLG 62
Query: 246 LKRLGNK 252
++ G K
Sbjct: 63 QQQ-GKK 68
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 163 (62.4 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 35/106 (33%), Positives = 67/106 (63%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD + +KILE L Y+V + I A+++ ++++ D+++ DV MP+MDGF
Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQP--DVILLDVMMPEMDGF 62
Query: 86 KLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
+ + + M +PV++++A +D + ++G+N GA D+L+KP +
Sbjct: 63 ETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAK 108
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 141 (54.7 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 37/123 (30%), Positives = 63/123 (51%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L VDD T +I++ LR+ + T + TAL ML+ + +FD V++D MP M
Sbjct: 5 MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQ--KGDFDFVVTDWNMPGM 62
Query: 83 DGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
G LL+ + + LPV+M++A + + ++ G Y++KP LK +
Sbjct: 63 QGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLDKI 122
Query: 140 IRR 142
R
Sbjct: 123 FER 125
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 163 (62.4 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 39/133 (29%), Positives = 71/133 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD+ ++L +E N TAL + + D+V+ D+ MP+MDG
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHP--DVVLMDIRMPEMDG 63
Query: 85 FKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
K L E+ E PV++++AY++ + ++ + GA DY++KP ++EL Q ++ +
Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123
Query: 144 KVDPKDQNRSPHE 156
+ K + R H+
Sbjct: 124 SM--KKEIRHLHQ 134
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 158 (60.7 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 42/97 (43%), Positives = 57/97 (58%)
Query: 185 NSTTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFR 243
NS+ K R+ WT ELH +F+ AV LG D+A PK +L +M V+GLT +V SHLQK+R
Sbjct: 9 NSSHASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 68
Query: 244 LSLKRLGNKTLEAGMVASVGSKDSSYLRIGALDGFGG 280
L+ K L + + E K+S + G LDG G
Sbjct: 69 LA-KYLPDSSSEG---KKTDKKESGDMLSG-LDGSSG 100
>TIGR_CMR|CHY_1367 [details] [associations]
symbol:CHY_1367 "C4-dicarboxylate response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR005471
InterPro:IPR024187 Pfam:PF00072 Pfam:PF09339 PIRSF:PIRSF006171
PROSITE:PS50110 SMART:SM00448 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
eggNOG:COG4565 HOGENOM:HOG000034816 RefSeq:YP_360200.1
ProteinModelPortal:Q3ACD4 STRING:Q3ACD4 GeneID:3728031
KEGG:chy:CHY_1367 PATRIC:21275867 KO:K11692 OMA:YMPKKDG
BioCyc:CHYD246194:GJCN-1366-MONOMER Uniprot:Q3ACD4
Length = 220
Score = 151 (58.2 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 37/138 (26%), Positives = 78/138 (56%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ + V+DD L+I + F++E + +E+ ++ + L +N + +L+I D+Y+PD+
Sbjct: 2 IKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNHSP-ELLILDIYLPDI 60
Query: 83 DGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL-------KN 134
DG LL E+ + + V+ ++A ++V + + +G DY++KP + E L KN
Sbjct: 61 DGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLTYKN 120
Query: 135 TWQHVIRRKKVDPKDQNR 152
+ + R++ V +D +R
Sbjct: 121 KYLKIGRKRSVQQEDIDR 138
>TAIR|locus:2172394 [details] [associations]
symbol:MYR1 "myb-related protein 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002688 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB012246
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00538966 RefSeq:NP_197325.1 RefSeq:NP_974798.1
UniGene:At.7556 ProteinModelPortal:Q9FK47 SMR:Q9FK47
EnsemblPlants:AT5G18240.1 EnsemblPlants:AT5G18240.4 GeneID:831942
KEGG:ath:AT5G18240 TAIR:At5g18240 InParanoid:Q9FK47 OMA:LETHTRT
PhylomeDB:Q9FK47 ProtClustDB:CLSN2686543 Genevestigator:Q9FK47
Uniprot:Q9FK47
Length = 402
Score = 161 (61.7 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLGL-DKAVPKKILDLMNVEGLTRENVASHLQKFRLS 245
+T KPR+ WT +LH +F+ AVN LG DKA PK I+ +M + GLT ++ SHLQK+RLS
Sbjct: 41 STDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS 100
Query: 246 LKRLGNK 252
K L +
Sbjct: 101 -KNLNGQ 106
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 156 (60.0 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 40/128 (31%), Positives = 73/128 (57%)
Query: 24 MRVLAVDDDQTCLKILEKFLR-ECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD- 81
MR+L ++DD C K +E L E + T+T+ ++ +N +++D+VI D++ P
Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKN-DDYDVVILDIHFPGK 59
Query: 82 MDGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
+DG+ +L +L + +PV++LS S +KG+ +GA DY+ KP EL + ++
Sbjct: 60 IDGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIV 119
Query: 141 RRKKVDPK 148
RR + P+
Sbjct: 120 RRTRGHPE 127
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 162 (62.1 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 36/119 (30%), Positives = 69/119 (57%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R++ +D+++ +++E L + Y V R+ A++ + ++DLV+SD+ MP MDG
Sbjct: 6 RIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKAG--DWDLVVSDIKMPGMDG 63
Query: 85 FKLLELVGLEMDL-PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL----KNTWQH 138
++L+ + + L PV+M++AY+ + ++ + GA D + KP EEL KN +H
Sbjct: 64 LEVLQRIKAKDPLVPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNALKH 122
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 153 (58.9 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 38/134 (28%), Positives = 70/134 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL ++DD++ ++ +L + V + LK E +DL++ D+ +P +DG
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEE--YDLILLDLMLPGIDG 60
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL-KNTWQHVIRRK 143
F++L V E D PV+++SA + ++G+ GA DY+ KP EL H+ R +
Sbjct: 61 FEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYE 120
Query: 144 KVDPKDQNRSPHEF 157
++ +N+ EF
Sbjct: 121 RLTGGRKNQDLLEF 134
>TAIR|locus:2026739 [details] [associations]
symbol:AT1G69580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 EMBL:AC021046 IPI:IPI00846148
RefSeq:NP_001077798.1 UniGene:At.52449 ProteinModelPortal:A8MSE5
SMR:A8MSE5 PRIDE:A8MSE5 EnsemblPlants:AT1G69580.2 GeneID:843294
KEGG:ath:AT1G69580 TAIR:At1g69580 eggNOG:NOG249461 OMA:MEINNNA
PhylomeDB:A8MSE5 ProtClustDB:CLSN2699064 ArrayExpress:A8MSE5
Genevestigator:A8MSE5 Uniprot:A8MSE5
Length = 337
Score = 159 (61.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 44/92 (47%), Positives = 57/92 (61%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRL- 244
+T KPR+ WT +LH KFI AVN LG +KA PK ++ +M + GLT ++ SHLQK+RL
Sbjct: 30 STDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRLG 89
Query: 245 -SLKRLGNKTLEAGMVAS---VGSK-DSSYLR 271
S+K NK LE + V SK DS LR
Sbjct: 90 KSMKFDDNK-LEVSSASENQEVESKNDSRDLR 120
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 152 (58.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 37/118 (31%), Positives = 69/118 (58%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+DD + +++EK+L + ++VT+ + + + +FDL+I D+ MP +DG
Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYL--KGSFDLIILDIMMPKLDGL 62
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMK-GINHGACDYLLKPVRMEELKNTWQHVIRR 142
+++ ++ + +P++M+SA DT + G+ GA DY+ KP M EL + IRR
Sbjct: 63 EVVRIIREKSAVPILMMSA-KDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/122 (33%), Positives = 64/122 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M++L VDD+ + ++ L YEV A ++L D++I DV +PD D
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLT---AADGREVLERWNEGPDVLILDVMLPDTD 57
Query: 84 GFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G++LL L + D+PV+ML+A S + G+ GA DY+ KP EL +++ RR
Sbjct: 58 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
Query: 143 KK 144
K
Sbjct: 118 VK 119
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 38/120 (31%), Positives = 63/120 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
MRVL ++D++ L+K E + L + R N+DL+I D+ +P D
Sbjct: 1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTE--NYDLIILDIMLPGRD 58
Query: 84 GFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G+++LE + E ++PV+ LSA ++G+ GA DYL+KP EL + ++RR
Sbjct: 59 GWEVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRR 118
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 139 (54.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 34/123 (27%), Positives = 68/123 (55%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL V+D++ +K+ L YE T ++AL + REN+ DL++ D+ +P++ G
Sbjct: 4 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 61
Query: 85 FKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACD-YLLKPVRMEELKNTWQHVI 140
++ + + + DL PVV ++A++ K + I G C+ Y+ KP+ + T + ++
Sbjct: 62 LEVTKWLKEDDDLAHIPVVAVTAFA-MKGDEERIREGGCEAYISKPISVVHFLETIKRLL 120
Query: 141 RRK 143
R+
Sbjct: 121 ERQ 123
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 151 (58.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 33/128 (25%), Positives = 72/128 (56%)
Query: 24 MRVLAVDDDQTCLKILEKFLR-ECQYEVTVTNRAITALKMLRENRN-NFDLVISDVYMPD 81
M++L ++DD + ++ + C ++ A + K + + N D+++ D+ +PD
Sbjct: 1 MKLLLIEDDAEIVDVISTIFQISCPNSRVIS--ASSGRKGIESVESVNPDIILLDLGLPD 58
Query: 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
M+GF +L+ + D+P+++L+ D V++G+ GA DY+ KP R EL + ++
Sbjct: 59 MNGFDVLKQIRNFSDVPIIILTVRGDESDVVRGLTLGANDYITKPFRQMELLARVRRLLT 118
Query: 142 RKKVDPKD 149
+K+++ +D
Sbjct: 119 KKQINGED 126
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 151 (58.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 32/122 (26%), Positives = 69/122 (56%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L ++D+ + ++ +L ++V V + T L+M + ++DL+I D+ +P M+G
Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQE--DYDLIILDIMLPKMNG 60
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL-KNTWQHVIRRK 143
F++ + + D+P++++SA + ++G+ GA DY+ KP EL H+ R +
Sbjct: 61 FEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYE 120
Query: 144 KV 145
++
Sbjct: 121 RL 122
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 36/123 (29%), Positives = 63/123 (51%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
M+VL VDD T +I++ LR+ + + + TAL ML+ +FD V++D MP M
Sbjct: 5 MKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPMLQGG--DFDFVVTDWNMPGM 62
Query: 83 DGFKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
G LL+ + + +L PV++++A + + ++ G Y++KP LK +
Sbjct: 63 QGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLKTKLDKI 122
Query: 140 IRR 142
R
Sbjct: 123 FER 125
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 39/122 (31%), Positives = 62/122 (50%)
Query: 24 MRVLAVDDDQTCLKILEKFLR---ECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMP 80
M+ L V+DD KI+++ L EC T A+ A ++ + +DLV D+ MP
Sbjct: 1 MKTLIVEDDFISRKIMKELLTSLGECDI-ATDGEEAVQAFRLALDEHRPYDLVCMDIMMP 59
Query: 81 DMDGFKLLELV-------GLE--MDLPVVMLSAYSDTKLVMKGINHG-ACDYLLKPVRME 130
+MDG + LE + GL ++ V+M +A D K V++ G A YL+KP+ +
Sbjct: 60 NMDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGATSYLVKPITKQ 119
Query: 131 EL 132
L
Sbjct: 120 RL 121
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 160 (61.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 39/117 (33%), Positives = 64/117 (54%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++LAVDDD+ L +LE L + + AL +L R + DL+ISD+ M M+G
Sbjct: 5 KILAVDDDELSLLMLENLLADAGFAPLTAVSGAQALALLE--REHVDLLISDLIMEGMNG 62
Query: 85 FKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
+LL+ V ++PV++++A + ++ + GA DYL KP E L+ T Q +
Sbjct: 63 LELLDRVRERYPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLRITLQRAL 119
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 160 (61.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 39/112 (34%), Positives = 61/112 (54%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL VDDD + ++LE L+E Y+V L++ E LV++D+ MP M G
Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPA--LVVTDLKMPGMGG 67
Query: 85 FKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
F+LL E+ G D V++++A+ + + + GA DY+ KP + LK T
Sbjct: 68 FRLLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLT 119
>TIGR_CMR|BA_5661 [details] [associations]
symbol:BA_5661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P10957 RefSeq:NP_847809.1
RefSeq:YP_022338.1 RefSeq:YP_031501.1 ProteinModelPortal:Q81JP1
DNASU:1085395 EnsemblBacteria:EBBACT00000009931
EnsemblBacteria:EBBACT00000017478 EnsemblBacteria:EBBACT00000024022
GeneID:1085395 GeneID:2816223 GeneID:2851759 KEGG:ban:BA_5661
KEGG:bar:GBAA_5661 KEGG:bat:BAS5263 OMA:CAHELVG
ProtClustDB:CLSK917695 BioCyc:BANT260799:GJAJ-5337-MONOMER
BioCyc:BANT261594:GJ7F-5516-MONOMER Uniprot:Q81JP1
Length = 215
Score = 148 (57.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 37/111 (33%), Positives = 61/111 (54%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKML-RENRNNFDLVISDVYMPDM 82
++VL VDD LK L FL Q ++ + A + L + N D+V+ D+YMP+M
Sbjct: 3 IKVLLVDDHTVVLKGLAFFL-STQEDIELVGEASNGKEALVKVGETNPDVVLMDLYMPEM 61
Query: 83 DGFKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
DG + + E D+ V++L+++SD V+ + GA Y+LK V ++L
Sbjct: 62 DGVEATACIKKEYPDVKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQL 112
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 45/157 (28%), Positives = 82/157 (52%)
Query: 15 GVIDKFPIGM---RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLR-EN---- 66
G I+ P+ + VLAVDD ++E+ LR +VT + AL+ L +N
Sbjct: 22 GGIESAPLDLDEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKAS 81
Query: 67 ----RNNFDLVISDVYMPDMDGFKLLELVGLEM---DLPVVMLSAYSDTKLVMKGINHGA 119
R DL+I+D MP M G++LL+ + ++PVV++S+ + + + + GA
Sbjct: 82 AEFDRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGA 141
Query: 120 CDYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHE 156
D+LLKPV++ ++K H+ + K+ ++ + P +
Sbjct: 142 QDFLLKPVKLADVKRLRSHLTKDVKLSNGNKRKLPED 178
>TAIR|locus:2089260 [details] [associations]
symbol:AT3G13040 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY050889 EMBL:AY096674
IPI:IPI00543771 RefSeq:NP_566442.1 RefSeq:NP_974298.1
UniGene:At.11993 ProteinModelPortal:Q949U2 SMR:Q949U2 STRING:Q949U2
PRIDE:Q949U2 EnsemblPlants:AT3G13040.1 EnsemblPlants:AT3G13040.2
GeneID:820490 KEGG:ath:AT3G13040 OMA:RIEEHAK
ProtClustDB:CLSN2688327 ArrayExpress:Q949U2 Genevestigator:Q949U2
Uniprot:Q949U2
Length = 449
Score = 159 (61.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 34/66 (51%), Positives = 43/66 (65%)
Query: 181 HENENSTTQKKPRVVWTTELHTKFIGAV-NLLGLDKAVPKKILDLMNVEGLTRENVASHL 239
H + S +K R+ WT ELH F+ AV L G +KA PK + LMNVEGLT +V SHL
Sbjct: 231 HPSPGSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHL 290
Query: 240 QKFRLS 245
QK+RL+
Sbjct: 291 QKYRLA 296
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 137 (53.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 36/123 (29%), Positives = 64/123 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L VDD T +I++ LR+ + TV + TA+ +L N + D +++D MP M
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVL--NSGSIDFLVTDWNMPGM 58
Query: 83 DGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
G LL V + LPV+M++A + + +++ G Y++KP + LK + +
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 140 IRR 142
R
Sbjct: 119 FER 121
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 156 (60.0 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 182 ENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDK-AVPKKILDLMNVEGLTRENVASHLQ 240
E + S + +K R W+ ELH +F+ A+ LG A PK+I DLM V+GLT + V SHLQ
Sbjct: 200 EQKQSHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQ 259
Query: 241 KFRLSLKRLGNKTLEAG 257
K+RL +R + G
Sbjct: 260 KYRLHTRRPATPVVRTG 276
>TIGR_CMR|BA_0287 [details] [associations]
symbol:BA_0287 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
ProteinModelPortal:Q81VC5 DNASU:1085878
EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
OMA:NYNLVIL ProtClustDB:CLSK917934
BioCyc:BANT260799:GJAJ-313-MONOMER
BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
Length = 237
Score = 150 (57.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 36/119 (30%), Positives = 66/119 (55%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+R+L DDD+ +L+ +L Y V AL++ N+NN+ +VI D+ MP +D
Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLF--NQNNYSIVILDLMMPKVD 61
Query: 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G ++ + + ++P++ML+A + G++ GA DY+ KP + E+ + +IRR
Sbjct: 62 GIEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRR 120
>TIGR_CMR|CPS_3065 [details] [associations]
symbol:CPS_3065 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_269763.1 ProteinModelPortal:Q47ZK7 STRING:Q47ZK7
GeneID:3520016 KEGG:cps:CPS_3065 PATRIC:21469133
ProtClustDB:CLSK938167 BioCyc:CPSY167879:GI48-3114-MONOMER
Uniprot:Q47ZK7
Length = 237
Score = 150 (57.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 34/123 (27%), Positives = 68/123 (55%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M +L ++DD+ ++ E +L+ YE T+ A+ M++ + + DL++ D+ +P +D
Sbjct: 13 MHILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMIK--KLSPDLILLDLMLPGVD 70
Query: 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
GF+L + + P+++L+A D + + GA DYL KP + + + ++RR
Sbjct: 71 GFELCKQAREFYNGPIIVLTAMEDDLSEVSLLKLGADDYLRKPAKPHIMSARIEALLRRA 130
Query: 144 KVD 146
KV+
Sbjct: 131 KVN 133
>TIGR_CMR|BA_3229 [details] [associations]
symbol:BA_3229 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
KO:K02483 RefSeq:NP_845535.1 RefSeq:YP_019868.1 RefSeq:YP_029256.1
ProteinModelPortal:Q81NG7 DNASU:1083819
EnsemblBacteria:EBBACT00000008287 EnsemblBacteria:EBBACT00000017508
EnsemblBacteria:EBBACT00000020077 GeneID:1083819 GeneID:2815940
GeneID:2850665 KEGG:ban:BA_3229 KEGG:bar:GBAA_3229 KEGG:bat:BAS2999
OMA:ADNHTTP ProtClustDB:CLSK916969
BioCyc:BANT260799:GJAJ-3061-MONOMER
BioCyc:BANT261594:GJ7F-3168-MONOMER Uniprot:Q81NG7
Length = 224
Score = 148 (57.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 40/121 (33%), Positives = 64/121 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
MRVL V+D+Q IL K L Y V AL + N +DL++ D+ +P ++
Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYI--NMATYDLIVLDIMIPGIN 58
Query: 84 GFKLLELVGLEMDLPVVMLSAYSDT-KLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G ++L+ + + V+L DT +KG++ GA DYL+KP +EL + ++RR
Sbjct: 59 GLQVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118
Query: 143 K 143
K
Sbjct: 119 K 119
>TIGR_CMR|DET_1294 [details] [associations]
symbol:DET_1294 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR009061 InterPro:IPR010093 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0000166 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204 SUPFAM:SSF46955
OMA:IRVIIMT TIGRFAMs:TIGR01764 RefSeq:YP_182006.1
ProteinModelPortal:Q3Z6Z3 STRING:Q3Z6Z3 GeneID:3229367
KEGG:det:DET1294 PATRIC:21609619 HOGENOM:HOG000275253
ProtClustDB:CLSK836971 BioCyc:DETH243164:GJNF-1295-MONOMER
Uniprot:Q3Z6Z3
Length = 180
Score = 135 (52.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 37/136 (27%), Positives = 72/136 (52%)
Query: 9 SSSDEDGVIDKFPIGMR--VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLREN 66
SS DE + K +G+R VL +DD+ T + ++ L + + V++ AL+ L+
Sbjct: 44 SSIDE--WLRKSAVGVRASVLVIDDESTVRSLFKETLEDQGHAVSMAKNGDEALEQLQSK 101
Query: 67 RNNFDLVISDVYMPDMDGFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125
+FDLV D+ MP ++G +L + + ++ LPV +++ Y D+ + K + G + K
Sbjct: 102 --DFDLVFLDLKMPGLNGAELYQKIRAIKPKLPVTIITGYPDSDTMAKVLAQGPFGVMNK 159
Query: 126 PVRMEELKNTWQHVIR 141
P ++ N ++ +R
Sbjct: 160 PFGEMDIINATKNFLR 175
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 40/128 (31%), Positives = 72/128 (56%)
Query: 24 MRVLAVDDDQTCLKILEKFLR-ECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD- 81
MR+L ++DD C K +E L E + T+ + ++ +N +++D+VI D++ P
Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKN-DDYDVVILDIHFPGK 59
Query: 82 MDGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
+DG+ +L +L + +PV++LS S +KG+ +GA DY+ KP EL + V+
Sbjct: 60 IDGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVV 119
Query: 141 RRKKVDPK 148
RR + P+
Sbjct: 120 RRTRGHPE 127
>UNIPROTKB|P0AEC5 [details] [associations]
symbol:barA species:83333 "Escherichia coli K-12"
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IDA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
[GO:0042542 "response to hydrogen peroxide" evidence=IMP]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0071310 "cellular response to organic substance"
evidence=IEP] [GO:0016868 "intramolecular transferase activity,
phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
Length = 918
Score = 161 (61.7 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 39/122 (31%), Positives = 64/122 (52%)
Query: 16 VIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75
V D+ + M V+AVDD+ LK++ L + V + + A++ R + FDL++
Sbjct: 660 VTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--RAKQMPFDLILM 717
Query: 76 DVYMPDMDGFKLLELVGL---EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
D+ MPDMDG + EL+ + PV+ ++A++ K + G DYL KP+ E L
Sbjct: 718 DIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
Query: 133 KN 134
N
Sbjct: 778 HN 779
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 122 (48.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 29/92 (31%), Positives = 55/92 (59%)
Query: 71 DLVISDVYMPDMDGFKLLELV-GLEM--DLPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127
+L+I+D MP M G+ LL+ V G D+PVV++S+ + + + + GA ++ LKPV
Sbjct: 75 NLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKPV 134
Query: 128 RMEELKNTWQHVIRRKKVDPKDQ---NRSPHE 156
++ ++K H+++RK+ P ++ PH+
Sbjct: 135 KLADMKKLKSHLLKRKQQLPMAAAAPDKPPHK 166
Score = 68 (29.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKML 63
VLAVDD K++E L+ Y+VT + AL++L
Sbjct: 12 VLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELL 49
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 153 (58.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNR-AITALKMLRENRNNFDLVISDVYM 79
+ M L +DD + + + + L+E + +E + R + K L N+ DLV+ D+ M
Sbjct: 1 MAMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTLLNNK--VDLVLCDLEM 58
Query: 80 PDMDGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
P MDGF+ L + G DLP+++L++ D ++G+ GA DY+ KP EL
Sbjct: 59 PRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 153 (58.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNR-AITALKMLRENRNNFDLVISDVYM 79
+ M L +DD + + + + L+E + +E + R + K L N+ DLV+ D+ M
Sbjct: 1 MAMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTLLNNK--VDLVLCDLEM 58
Query: 80 PDMDGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
P MDGF+ L + G DLP+++L++ D ++G+ GA DY+ KP EL
Sbjct: 59 PRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>TIGR_CMR|CPS_1865 [details] [associations]
symbol:CPS_1865 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_268595.1 ProteinModelPortal:Q484C0
STRING:Q484C0 GeneID:3522541 KEGG:cps:CPS_1865 PATRIC:21466873
OMA:DINTHQV BioCyc:CPSY167879:GI48-1935-MONOMER Uniprot:Q484C0
Length = 223
Score = 147 (56.8 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 32/120 (26%), Positives = 63/120 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M++L V+D Q+ +++ + E +++ L + + + FD +I D+ +P +D
Sbjct: 1 MKILLVEDCQSVAEVIFDYFEESDFDLDYAATGNLGLSLAQSQK--FDCIILDIMLPGLD 58
Query: 84 GFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G L + + E + P++ML+A ++ G+ GA DY++KP +E L+ V RR
Sbjct: 59 GISLCQQLRAEGNNTPIIMLTARDTNDDMLLGLRQGADDYIVKPFNLELLEARIHSVTRR 118
>TIGR_CMR|BA_3661 [details] [associations]
symbol:BA_3661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
ProteinModelPortal:Q81Y94 DNASU:1085996
EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
OMA:ENTMSLA ProtClustDB:CLSK917123
BioCyc:BANT260799:GJAJ-3457-MONOMER
BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
Length = 225
Score = 138 (53.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 30/101 (29%), Positives = 56/101 (55%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL V+D++ +I+ + R +EV AL++ E+ DL++ D+ +P++DG+
Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHE--IDLIMLDIMLPEIDGW 62
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
+ + E +P++ML+A SD + G GA +Y+ KP
Sbjct: 63 SVCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKP 103
Score = 46 (21.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 235 VASHLQKFRLSLKRLGNKTLEAGMVASVGSK 265
V +H++K R +LG+K G V VG K
Sbjct: 195 VDTHIKKLR---NKLGDKAKHIGTVIRVGYK 222
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 133 (51.9 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 33/111 (29%), Positives = 59/111 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +++E L+ Y+VT+ AL + R FD +++D MP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 85 FKLLE-LVGLE--MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
L++ L G+ M P++ML+ + + +G GA +++KP ++L
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 133 (51.9 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 38/114 (33%), Positives = 56/114 (49%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+V+ VDD T + L E + + + AL+ E DL + D+ MP MDG
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPKMDG 61
Query: 85 FKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
F L+ + +L P VM+S S +GI+ GA Y++KPV EEL+ T
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQQT 115
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 133 (51.9 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 34/107 (31%), Positives = 57/107 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L V+D+++ LK+ L Y V +AL + DL+I D+ +P MDG
Sbjct: 5 RILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMDG 62
Query: 85 FKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
F++ +++ + +PVVML+A T+ KG+ GA Y+ KP +
Sbjct: 63 FEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFK 109
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 133 (51.9 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 33/111 (29%), Positives = 59/111 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +++E L+ Y+VT+ AL + R FD +++D MP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 85 FKLLE-LVGLE--MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
L++ L G+ M P++ML+ + + +G GA +++KP ++L
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 133 (51.9 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 38/114 (33%), Positives = 56/114 (49%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+V+ VDD T + L E + + + AL+ E DL + D+ MP MDG
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPKMDG 61
Query: 85 FKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
F L+ + +L P VM+S S +GI+ GA Y++KPV EEL+ T
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQQT 115
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 133 (51.9 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 41/146 (28%), Positives = 74/146 (50%)
Query: 8 GSSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKML---- 63
G S D + + VLAVDD+ K++E+ L+ +VT + AL+ L
Sbjct: 4 GCGSGSDSCLSSMEEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGD 63
Query: 64 ---RENRNNF---DLVISDVYMPDMDGFKLLELVGLEMDL---PVVMLSAYSDTKLVMKG 114
++ N +L+I+D MP M GF+LL+ V +L PVV+LS+ + + K
Sbjct: 64 PQQTDSLTNVMKVNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKC 123
Query: 115 INHGACDYLLKPVRMEELKNTWQHVI 140
+ GA ++ KP+++ +++ H++
Sbjct: 124 LASGAQMFMQKPLKLSDVEKLKCHLL 149
>TIGR_CMR|CPS_1260 [details] [associations]
symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
response regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
OMA:THKRNIK ProtClustDB:CLSK938262
BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
Length = 206
Score = 143 (55.4 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 40/123 (32%), Positives = 67/123 (54%)
Query: 24 MRVLAVDDDQTCLKILEKFLR--ECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
++VL VDD + L+ L +C V AL++++ +FD+V+ D+ MP+
Sbjct: 2 IKVLLVDDHPLFREGLKHRLSLDDCIEVVGEAENGKQALELIKSL--DFDIVLMDINMPE 59
Query: 82 MDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
MDG +LEL+ ++D V+MLS + + + ++ + HGA Y+LK V EL + VI
Sbjct: 60 MDGMYVLELIKEQDLDCKVLMLSMHDNKEYILGAMRHGADGYILKDVPGAELIEAIKKVI 119
Query: 141 RRK 143
K
Sbjct: 120 SGK 122
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 155 (59.6 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 32/110 (29%), Positives = 62/110 (56%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L +DD++T + L L+ + V A + L R+ FD+VI+D+++PD G
Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTL--TRDTFDIVITDLFLPDASG 63
Query: 85 FKLLELVGLEMDLP-VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
+L+ V + L V++++ ++ + +K + GA DY+ KP+ +ELK
Sbjct: 64 IDILKKVKEDAPLTEVILITGHASAETAVKAMKEGAFDYITKPLNFDELK 113
>TIGR_CMR|CBU_2006 [details] [associations]
symbol:CBU_2006 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 KO:K02483
RefSeq:NP_820981.1 ProteinModelPortal:Q83AA0 PRIDE:Q83AA0
GeneID:1209919 KEGG:cbu:CBU_2006 PATRIC:17932757 OMA:AKNGSEM
ProtClustDB:CLSK915183 BioCyc:CBUR227377:GJ7S-1980-MONOMER
Uniprot:Q83AA0
Length = 245
Score = 148 (57.2 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 39/119 (32%), Positives = 59/119 (49%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDDD +L KFLR +E ++ +L + DLVI D+ MP DG
Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQA--VDLVILDIMMPGDDGL 64
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
L + +P++ML+A S+ + G+ GA DYL KP EL + ++RR +
Sbjct: 65 TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 157 (60.3 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 42/133 (31%), Positives = 70/133 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M++ VDD+Q + + ++L Y+ A ALK+L +VISD+ MP MD
Sbjct: 5 MKIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLGSEYPG--IVISDIKMPGMD 62
Query: 84 GFKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV---RMEELKNTWQHV 139
G + L+ L+G + LPV+M++ + D + ++ + GA D+L KP RM +L +
Sbjct: 63 GMQFLKKLMGADSSLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSDLAKRASNA 122
Query: 140 IRRKKVDPKDQNR 152
RR +D + R
Sbjct: 123 -RRLTLDNRALRR 134
Score = 40 (19.1 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 213 LDKAVPKKILDLMNVEGLTREN--VA-SHLQK 241
L A+ K+L +MN +G E VA S+LQ+
Sbjct: 245 LSDALQAKLLSVMNQQGTPAETRIVAISNLQE 276
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 153 (58.9 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 45/131 (34%), Positives = 72/131 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL VDD++ ++L L +T N + AL++L +N + DL++ D+ MP+++GF
Sbjct: 7 VLVVDDEEMNRELLSVMLDGLATPITAQN-GLEALRVLDKN-SAIDLILLDLEMPELNGF 64
Query: 86 KLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK-NTWQHVIR 141
L + L D+PV++L+A D V + + GA D+L KP EEL+ HV
Sbjct: 65 ATLATLKKHPLWCDIPVIVLTASKDE--VTRTLRLGANDFLAKPYDTEELRLRVMNHVRA 122
Query: 142 RKKVD-PKDQN 151
+K VD +D N
Sbjct: 123 KKLVDLSQDVN 133
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 146 (56.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 39/134 (29%), Positives = 71/134 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L +DDD ++L + L +++T+ L++ ++DL++ DV +P ++G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALAT--DYDLILLDVMLPKLNG 60
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
F++L + PV+ML+A D + G+ GA DYL KP EL + +IRR
Sbjct: 61 FEVLRALRQHKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELIARIRAIIRRSH 120
Query: 145 VDPKDQNRSP-HEF 157
+ ++ + +P EF
Sbjct: 121 LTAQEIHATPAQEF 134
>TIGR_CMR|GSU_0789 [details] [associations]
symbol:GSU_0789 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_951846.1 ProteinModelPortal:Q74F20 GeneID:2685295
KEGG:gsu:GSU0789 PATRIC:22024339 OMA:HAVAARN
BioCyc:GSUL243231:GH27-807-MONOMER Uniprot:Q74F20
Length = 125
Score = 132 (51.5 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMPD 81
G VL DD++ L+ L+K + V + L + + + L++ D+ +PD
Sbjct: 3 GGSVLICDDEEGMLRYLKKMIEAAGLRVETFGNGTSLLARIEGGDPGDASLLLQDMRLPD 62
Query: 82 MDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRME 130
DG ++L V L LPVVM++AY+ ++V + GA D+L KP E
Sbjct: 63 ADGLEILHRVKELRPALPVVMMTAYACDEVVRAAFDGGASDFLPKPFTRE 112
>UNIPROTKB|Q9KN24 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport transcriptional
regulatory protein" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 154 (59.3 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 34/130 (26%), Positives = 70/130 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+ ++DD + ++L+ ++V + +AL + + +F V+SDV +PD DG
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQ--SFAAVVSDVRLPDTDG 62
Query: 85 FKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
LL L ++ +PV++++ + D + +K ++ GA D++ KP + E L NT + +
Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQY 122
Query: 144 KVDPKDQNRS 153
+ Q+R+
Sbjct: 123 QNALSSQSRA 132
>TIGR_CMR|VC_A0142 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport
transcriptional regulatory protein" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 154 (59.3 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 34/130 (26%), Positives = 70/130 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+ ++DD + ++L+ ++V + +AL + + +F V+SDV +PD DG
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQ--SFAAVVSDVRLPDTDG 62
Query: 85 FKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
LL L ++ +PV++++ + D + +K ++ GA D++ KP + E L NT + +
Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQY 122
Query: 144 KVDPKDQNRS 153
+ Q+R+
Sbjct: 123 QNALSSQSRA 132
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 154 (59.3 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 39/132 (29%), Positives = 71/132 (53%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD++ +IL+ L +YE T AL +L E FD++++D+ M M G
Sbjct: 5 ILIVDDERGQREILQTILEGERYETTTAAGGQEALALLDERE--FDVILTDLKMQGMSGM 62
Query: 86 KLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
+LLE L+ + ++M++A+ ++ + GA DYL KP+ + L T + + R +
Sbjct: 63 ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERVR 122
Query: 145 VDPKDQNRSPHE 156
+ +NR+ H+
Sbjct: 123 L--LKENRALHK 132
>TIGR_CMR|DET_1231 [details] [associations]
symbol:DET_1231 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_181944.1 ProteinModelPortal:Q3Z755 STRING:Q3Z755
GeneID:3229494 KEGG:det:DET1231 PATRIC:21609493 OMA:HIWESES
ProtClustDB:CLSK741625 BioCyc:DETH243164:GJNF-1232-MONOMER
Uniprot:Q3Z755
Length = 225
Score = 145 (56.1 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 37/121 (30%), Positives = 63/121 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M++L ++DD K++ L E Y V + +M FD++I D+ +P++D
Sbjct: 3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAY--TFDVIILDIMLPELD 60
Query: 84 GFKLLELVGLEMD-LPVVMLSA-YSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
GF + + + P++ML+A Y + V G+N GA DYL+KP EL + ++R
Sbjct: 61 GFAVCHKIRSNGNQTPIIMLTARYQEADKV-NGLNCGADDYLVKPFSFPELLARLRALLR 119
Query: 142 R 142
R
Sbjct: 120 R 120
>UNIPROTKB|Q9KU36 [details] [associations]
symbol:VC_0693 "Uncharacterized response regulatory protein
VC_0693" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR007492 Pfam:PF00072
Pfam:PF04397 PROSITE:PS50110 PROSITE:PS50930 SMART:SM00448
SMART:SM00850 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3279 KO:K02477
ProtClustDB:PRK11697 PIR:B82292 RefSeq:NP_230342.1
ProteinModelPortal:Q9KU36 DNASU:2615482 GeneID:2615482
KEGG:vch:VC0693 PATRIC:20080501 OMA:ENESDIT Uniprot:Q9KU36
Length = 237
Score = 146 (56.5 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 40/125 (32%), Positives = 68/125 (54%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMPDM 82
+ L +DD++ + L + L E ++ V +A A++ L++ N+ D+V D+ MP +
Sbjct: 2 LSALLIDDERFAREELAELLAESG-QIEVIGQASNAIEGLKKINQLKPDVVFLDIQMPQI 60
Query: 83 DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G +LL ++ E VV ++AY + ++ A DYLLKPV E L T Q ++R+
Sbjct: 61 SGIELLSMLDPETMPEVVFVTAYD--QYALQAFEDNAFDYLLKPVDTERLAKTVQRLLRQ 118
Query: 143 -KKVD 146
KK D
Sbjct: 119 HKKSD 123
>TIGR_CMR|VC_0693 [details] [associations]
symbol:VC_0693 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR007492 Pfam:PF00072 Pfam:PF04397 PROSITE:PS50110
PROSITE:PS50930 SMART:SM00448 SMART:SM00850 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3279 KO:K02477 ProtClustDB:PRK11697 PIR:B82292
RefSeq:NP_230342.1 ProteinModelPortal:Q9KU36 DNASU:2615482
GeneID:2615482 KEGG:vch:VC0693 PATRIC:20080501 OMA:ENESDIT
Uniprot:Q9KU36
Length = 237
Score = 146 (56.5 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 40/125 (32%), Positives = 68/125 (54%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMPDM 82
+ L +DD++ + L + L E ++ V +A A++ L++ N+ D+V D+ MP +
Sbjct: 2 LSALLIDDERFAREELAELLAESG-QIEVIGQASNAIEGLKKINQLKPDVVFLDIQMPQI 60
Query: 83 DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G +LL ++ E VV ++AY + ++ A DYLLKPV E L T Q ++R+
Sbjct: 61 SGIELLSMLDPETMPEVVFVTAYD--QYALQAFEDNAFDYLLKPVDTERLAKTVQRLLRQ 118
Query: 143 -KKVD 146
KK D
Sbjct: 119 HKKSD 123
>TIGR_CMR|SO_4647 [details] [associations]
symbol:SO_4647 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:P08402
KO:K07660 ProtClustDB:CLSK907750 RefSeq:NP_720163.1
ProteinModelPortal:Q8E8L6 GeneID:1172229 KEGG:son:SO_4647
PATRIC:23528955 OMA:FEYFMLH Uniprot:Q8E8L6
Length = 231
Score = 145 (56.1 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 41/127 (32%), Positives = 64/127 (50%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
MR+L V+DD L++ L + Y + V + L E N+D I DV +P +D
Sbjct: 1 MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEY--NYDAAIIDVGLPKLD 58
Query: 84 GFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G L+ + E P+++L+A + ++G++ GA DYL KP EEL + +IRR
Sbjct: 59 GISLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR 118
Query: 143 K--KVDP 147
K P
Sbjct: 119 SAGKASP 125
>UNIPROTKB|Q0J235 [details] [associations]
symbol:RL9 "Probable transcription factor RL9"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IDA] [GO:0010158 "abaxial cell fate specification"
evidence=IMP] [GO:0010229 "inflorescence development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AP008215 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0010229
eggNOG:NOG330873 HOGENOM:HOG000241649 EMBL:AP005904 EMBL:FJ268747
EMBL:FJ268748 RefSeq:NP_001063097.1 UniGene:Os.5597 PRIDE:Q0J235
GeneID:4346973 KEGG:osa:4346973 Gramene:Q0J235 OMA:DALPWRH
ProtClustDB:CLSN2697690 Uniprot:Q0J235
Length = 532
Score = 154 (59.3 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 58/210 (27%), Positives = 96/210 (45%)
Query: 188 TQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRLSL 246
+ + PR+ WT+ LH +F+ AV LLG ++A PK +L+LM+V+ LT +V SHLQ +R ++
Sbjct: 321 SMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR-TV 379
Query: 247 KRLGNKTLEAGMVASVGSKDSSYLRIG-ALDGFGGSHSVNXXXXXXXXXXXXXXXXXXMI 305
K +G A GS D + G A G G S +
Sbjct: 380 KSTDKPAASSGP-ADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEH----- 433
Query: 306 GRLNSSAGLSMHGIASSG-MIKPGLSQSFNTSFNTIGKNQQ-AMFPANRNSNLVQGVQTS 363
GR S S G G M + + T ++ ++ + N +++ G+ +
Sbjct: 434 GRSASEGAASSVGGGGGGDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLSSP 493
Query: 364 LEPNQMPQSESTTHIGDFNH-INSPTA-FT 391
+E N P S++ + NH ++SP+ FT
Sbjct: 494 IE-NLEPCRSSSSQVS--NHELSSPSLEFT 520
>TIGR_CMR|BA_1877 [details] [associations]
symbol:BA_1877 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:NP_844293.1 RefSeq:YP_018518.1 RefSeq:YP_028003.1
HSSP:Q9WXY0 ProteinModelPortal:Q81S03 DNASU:1087421
EnsemblBacteria:EBBACT00000008114 EnsemblBacteria:EBBACT00000014243
EnsemblBacteria:EBBACT00000023021 GeneID:1087421 GeneID:2817591
GeneID:2853065 KEGG:ban:BA_1877 KEGG:bar:GBAA_1877 KEGG:bat:BAS1739
OMA:ANLMQEG ProtClustDB:CLSK584084
BioCyc:BANT260799:GJAJ-1808-MONOMER
BioCyc:BANT261594:GJ7F-1884-MONOMER Uniprot:Q81S03
Length = 232
Score = 145 (56.1 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 34/101 (33%), Positives = 55/101 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDDDQ ++ + L + ++V AL+++ N N+ L I D+ MP MDG
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII--NNNSIQLAILDIMMPQMDGI 63
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
+L + + LP++ LSA S + G + GA DY++KP
Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKP 104
>CGD|CAL0003344 [details] [associations]
symbol:SLN1 species:5476 "Candida albicans" [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IGI]
[GO:0004673 "protein histidine kinase activity" evidence=ISS;IDA]
[GO:0005887 "integral to plasma membrane" evidence=IEA] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0046777
"protein autophosphorylation" evidence=IEA] [GO:0018106
"peptidyl-histidine phosphorylation" evidence=IEA] [GO:0006469
"negative regulation of protein kinase activity" evidence=IEA]
[GO:0005034 "osmosensor activity" evidence=IEA] [GO:0009927
"histidine phosphotransfer kinase activity" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
Length = 1373
Score = 159 (61.0 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 38/131 (29%), Positives = 73/131 (55%)
Query: 9 SSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLR-ECQYEVTVT-N--RAITALKMLR 64
+++D V+D +RVL +D+ +++ + L+ E +T+ N +AI +K
Sbjct: 1230 TTTDHTTVLDDIS-HLRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFVKESI 1288
Query: 65 ENRNNFDLVISDVYMPDMDGFKLLELV--GLEMDLPVVMLSAYSDTKLVMKGINHGACDY 122
EN NFDL+ DV MP++DG K +++ L+ + P++ L+A++D V + +N G +
Sbjct: 1289 ENNENFDLIFMDVQMPEVDGLKATKMIRKNLQYNKPIIALTAFADESNVKECLNSGMSGF 1348
Query: 123 LLKPVRMEELK 133
+ KP+ +K
Sbjct: 1349 ITKPISKTNIK 1359
>UNIPROTKB|Q5A872 [details] [associations]
symbol:SLN1 "Potential response regulator protein"
species:237561 "Candida albicans SC5314" [GO:0004673 "protein
histidine kinase activity" evidence=ISS;IDA] [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IGI]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
Length = 1373
Score = 159 (61.0 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 38/131 (29%), Positives = 73/131 (55%)
Query: 9 SSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLR-ECQYEVTVT-N--RAITALKMLR 64
+++D V+D +RVL +D+ +++ + L+ E +T+ N +AI +K
Sbjct: 1230 TTTDHTTVLDDIS-HLRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFVKESI 1288
Query: 65 ENRNNFDLVISDVYMPDMDGFKLLELV--GLEMDLPVVMLSAYSDTKLVMKGINHGACDY 122
EN NFDL+ DV MP++DG K +++ L+ + P++ L+A++D V + +N G +
Sbjct: 1289 ENNENFDLIFMDVQMPEVDGLKATKMIRKNLQYNKPIIALTAFADESNVKECLNSGMSGF 1348
Query: 123 LLKPVRMEELK 133
+ KP+ +K
Sbjct: 1349 ITKPISKTNIK 1359
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/108 (28%), Positives = 65/108 (60%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+D +T +++ L + Y+VT+ + A+++L +N + FDLV+ D+ MP MDG
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKN-HVFDLVLMDISMPIMDGI 514
Query: 86 KLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
+++ +++P++ L+A++ I+ G D +LKP+R +++
Sbjct: 515 AATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDI 562
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/108 (28%), Positives = 65/108 (60%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+D +T +++ L + Y+VT+ + A+++L +N + FDLV+ D+ MP MDG
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKN-HVFDLVLMDISMPIMDGI 514
Query: 86 KLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
+++ +++P++ L+A++ I+ G D +LKP+R +++
Sbjct: 515 AATKILRDKHIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDI 562
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 39/123 (31%), Positives = 66/123 (53%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
++VL VDD++ +L + L YEV AL+ L+E F L I D+ MP +D
Sbjct: 5 IKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEE--TFHLAIFDIKMPGID 62
Query: 84 GFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G +LL+ L+ +L V++L+ + + + + GA DYL KP + EL+ T Q +
Sbjct: 63 GIELLQRARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAYEK 122
Query: 143 KKV 145
+++
Sbjct: 123 RQL 125
>UNIPROTKB|P0ACZ8 [details] [associations]
symbol:cusR "CusR-Pasp DNA binding transcriptional
activator" species:83333 "Escherichia coli K-12" [GO:0001114
"protein-DNA-RNA complex" evidence=IDA] [GO:0001046 "core promoter
sequence-specific DNA binding" evidence=IDA] [GO:0046688 "response
to copper ion" evidence=IDA;IMP] [GO:0010628 "positive regulation
of gene expression" evidence=IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS;IDA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0032993 "protein-DNA complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0046688 GO:GO:0010628
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160
EMBL:U82598 eggNOG:COG0745 GO:GO:0001046 GO:GO:0032993
EMBL:AF245661 EMBL:U82579 PIR:A64790 RefSeq:NP_415103.1
RefSeq:YP_488858.1 ProteinModelPortal:P0ACZ8 SMR:P0ACZ8
IntAct:P0ACZ8 EnsemblBacteria:EBESCT00000001137
EnsemblBacteria:EBESCT00000017813 GeneID:12930897 GeneID:945003
KEGG:ecj:Y75_p0558 KEGG:eco:b0571 PATRIC:32116310 EchoBASE:EB3612
EcoGene:EG13851 HOGENOM:HOG000034815 KO:K07665 OMA:AMTEPYD
ProtClustDB:PRK09836 BioCyc:EcoCyc:G6319-MONOMER
BioCyc:ECOL316407:JW0560-MONOMER Genevestigator:P0ACZ8
GO:GO:0001114 TIGRFAMs:TIGR01387 Uniprot:P0ACZ8
Length = 227
Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 32/120 (26%), Positives = 67/120 (55%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M++L V+D++ + L K L E + V + + + + ++DL+I D+ +PD++
Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVN 58
Query: 84 GFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G+ ++ ++ +P+++L+A + +KG+ GA DYL+KP EL + ++RR
Sbjct: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 143 (55.4 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 42/141 (29%), Positives = 73/141 (51%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKML---------RENRNNFDLVI 74
+ VLAVDD ++E+ LR +VT + AL+ L +R DL+I
Sbjct: 33 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLII 92
Query: 75 SDVYMPDMDGFKLLELVGLEM---DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131
+D MP M G++LL+ + ++PVV++S+ + + + + GA D+LLKPV++ +
Sbjct: 93 TDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLAD 152
Query: 132 LKNTWQHVIRRKKVDPKDQNR 152
+K ++ R KV + R
Sbjct: 153 VKRLRSYLTRDVKVAAEGNKR 173
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 151 (58.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 35/122 (28%), Positives = 69/122 (56%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L DD+++ +L K LR+ + V + AL++++ N +DL I D+ MP G
Sbjct: 5 RILVADDEESMRWVLSKALRKKGFTVDLARDGEEALRLIQSNE--YDLAILDIKMPGFTG 62
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
+LL+ V L+ DL +V+++A + K ++ + GA DY+ KP ++ + + V + +
Sbjct: 63 LELLDKVRELKHDLLMVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIIEKVHKAR 122
Query: 144 KV 145
++
Sbjct: 123 EI 124
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 35/117 (29%), Positives = 61/117 (52%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD++ ++ +L+ Y+V L++L EN + LV+ D+ MP +DG
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVH--LVVLDIMMPKVDGI 63
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+ + E ++P++MLSA + + G+ GA DY+ KP EL + +RR
Sbjct: 64 HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 36/123 (29%), Positives = 60/123 (48%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ F VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++LA+DD T L+ ++ L ++V + AL ML + FDL+I+D+ MP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDML--GKEKFDLIITDLNMPEMDG 60
Query: 85 FKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
++ V + PV++L+ S + GA ++ KP E+L + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++LA+DD T L+ ++ L ++V + AL ML + FDL+I+D+ MP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDML--GKEKFDLIITDLNMPEMDG 60
Query: 85 FKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
++ V + PV++L+ S + GA ++ KP E+L + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/121 (26%), Positives = 64/121 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L VDD T +I++ L ++ V + A +L +N + ++I+D MP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED-VKVLITDWNMPEM 59
Query: 83 DGFKLLELVGLEM---DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
+G +L++ V E D+P++M++ V+ + G +Y++KP + LK + V
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
Query: 140 I 140
+
Sbjct: 120 L 120
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 33/111 (29%), Positives = 57/111 (51%)
Query: 26 VLAVDDDQTCLKILEKFLRECQY---EVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
VL VDD T KI+ + LR+ E+ I L +L + + DL++SD+ MP+M
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVL--SGKSVDLILSDINMPNM 61
Query: 83 DGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
DG + ++ P+VM++ ++ + I+ GA D + KP ++L
Sbjct: 62 DGLEFIKQARANGHKAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 182 ENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDK-AVPKKILDLMNVEGLTRENVASHLQ 240
+ S T +K R W+ ELH +F+ A+ LG A PK+I D M V+GLT + V SHLQ
Sbjct: 206 QQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQ 265
Query: 241 KFRLSLKR 248
K+RL +R
Sbjct: 266 KYRLHTRR 273
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 189 QKKPRVVWTTELHTKFIGAVNLLGLDK-AVPKKILDLMNVEGLTRENVASHLQKFRLSLK 247
Q+K R W+ ELH +F+ A+ LG A PK+I D+M V+GLT + V SHLQK+RL +
Sbjct: 194 QRKNRRCWSQELHRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKYRLHAR 253
Query: 248 RLGNKT 253
R T
Sbjct: 254 RPSQTT 259
>TAIR|locus:505006489 [details] [associations]
symbol:KAN3 "AT4G17695" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0007275
GO:GO:0005634 GO:GO:0030154 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:Z97344 HOGENOM:HOG000241649 EMBL:AY048690 IPI:IPI00544036
RefSeq:NP_567535.1 UniGene:At.26411 ProteinModelPortal:Q941I2
SMR:Q941I2 PaxDb:Q941I2 PRIDE:Q941I2 EnsemblPlants:AT4G17695.1
GeneID:827490 KEGG:ath:AT4G17695 TAIR:At4g17695 eggNOG:NOG253351
InParanoid:Q941I2 OMA:SSNENEW PhylomeDB:Q941I2
ProtClustDB:CLSN2917571 Genevestigator:Q941I2 Uniprot:Q941I2
Length = 322
Score = 147 (56.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 37/96 (38%), Positives = 54/96 (56%)
Query: 190 KKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKR 248
+ PR+ WTT LH F+ AV LLG ++A PK +L+LM+V+ LT +V SHLQ +R ++K
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYR-TIKS 221
Query: 249 LGNKTLEAGMV-ASVGSKDSSYLRIGALDGFGGSHS 283
T +G GS+ +S L G + S
Sbjct: 222 TEKPTTSSGQSDCENGSQVNSEREARNLTGLWNNSS 257
>UNIPROTKB|Q9KNL8 [details] [associations]
symbol:VC_2714 "Transcriptional regulator OmpR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 143 (55.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 39/123 (31%), Positives = 63/123 (51%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL VDDD +LE++L E ++V ++L R NF L++ D+ +P DG
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLL--TRENFHLMVLDLMLPGEDG 63
Query: 85 FKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
+ L +P++ML+A D + G+ GA DYL KP EL + V+RR+
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
Query: 144 KVD 146
++
Sbjct: 124 VIE 126
>TIGR_CMR|VC_2714 [details] [associations]
symbol:VC_2714 "transcriptional regulator OmpR,"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 143 (55.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 39/123 (31%), Positives = 63/123 (51%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL VDDD +LE++L E ++V ++L R NF L++ D+ +P DG
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLL--TRENFHLMVLDLMLPGEDG 63
Query: 85 FKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
+ L +P++ML+A D + G+ GA DYL KP EL + V+RR+
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
Query: 144 KVD 146
++
Sbjct: 124 VIE 126
>TAIR|locus:2139865 [details] [associations]
symbol:PHR1 "phosphate starvation response 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016036 "cellular response to phosphate starvation"
evidence=IMP] [GO:0055063 "sulfate ion homeostasis" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0071486 "cellular
response to high light intensity" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0016036 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0071486
HOGENOM:HOG000064669 EMBL:AY081290 EMBL:BT002187 EMBL:AJ310799
IPI:IPI00520685 RefSeq:NP_194590.2 UniGene:At.4525
ProteinModelPortal:Q94CL7 SMR:Q94CL7 PaxDb:Q94CL7 PRIDE:Q94CL7
EnsemblPlants:AT4G28610.1 GeneID:828979 KEGG:ath:AT4G28610
TAIR:At4g28610 eggNOG:NOG275307 InParanoid:Q94CL7 OMA:EKQCKSG
PhylomeDB:Q94CL7 ProtClustDB:CLSN2915055 Genevestigator:Q94CL7
GO:GO:0055063 Uniprot:Q94CL7
Length = 409
Score = 149 (57.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/67 (50%), Positives = 44/67 (65%)
Query: 183 NENSTTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQK 241
N N+ T K R+ WT ELH F+ AVN LG ++A PK +L +M VEGLT +V SHLQK
Sbjct: 218 NSNNGTGKA-RMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQK 276
Query: 242 FRLSLKR 248
+R + R
Sbjct: 277 YRTARYR 283
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 148 (57.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 189 QKKPRVVWTTELHTKFIGAVNLLGLDK-AVPKKILDLMNVEGLTRENVASHLQKFRLSLK 247
+K+ R W+ ELH KF+ A++ LG + A PK+I DLM V+GLT + V SHLQK+R+ ++
Sbjct: 215 KKEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIR 274
Query: 248 RLG---NKTLEAGMVASVGSKDSSYL 270
+ KTL + V ++S L
Sbjct: 275 KHPLHPTKTLSSSDQPGVLERESQSL 300
>UNIPROTKB|P0AE88 [details] [associations]
symbol:cpxR "CpxR transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
Genevestigator:P0AE88 Uniprot:P0AE88
Length = 232
Score = 142 (55.0 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 41/128 (32%), Positives = 66/128 (51%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDDD+ +L++ L + V V + AL +L ++ DL++ DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS---IDLLLLDVMMPKKNG 59
Query: 85 FKLLELVGLEMDLPVVMLSAY-SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
L+ + PV+ML+A S+ V+ G+ GA DYL KP EL + ++RR
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVL-GLELGADDYLPKPFNDRELVARIRAILRRS 118
Query: 144 KVDPKDQN 151
+ QN
Sbjct: 119 HWSEQQQN 126
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 127 (49.8 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 37/114 (32%), Positives = 59/114 (51%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++VL VDD T +L L++ + ++T +K++ +N ++ LVISD MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 83 DGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
DG LL+ V ++L+A D LV K GA + L KP +E++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>TAIR|locus:2125771 [details] [associations]
symbol:AT4G04580 "AT4G04580" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AL161501 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AF074021 IPI:IPI00541303 PIR:G85057
RefSeq:NP_192367.1 UniGene:At.54143 ProteinModelPortal:Q9XEB2
SMR:Q9XEB2 EnsemblPlants:AT4G04580.1 GeneID:825790
KEGG:ath:AT4G04580 TAIR:At4g04580 eggNOG:NOG300503
HOGENOM:HOG000153846 InParanoid:Q9XEB2 OMA:RDLTISH PhylomeDB:Q9XEB2
ProtClustDB:CLSN2915807 ArrayExpress:Q9XEB2 Genevestigator:Q9XEB2
Uniprot:Q9XEB2
Length = 166
Score = 127 (49.8 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 192 PRVVWTTELHTKFIGAVNLLGLDK-AVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLG 250
PR+ WT +L +FI + LG ++ A PK+IL LM V LT +V SHLQ +R K
Sbjct: 15 PRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQMYRNKKKEES 74
Query: 251 NKTLEAGMVASVGSKDSS-YLRI 272
+K ++ M+ + + S YL+I
Sbjct: 75 SKEIK--MMREMTQRQSQQYLQI 95
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 141 (54.7 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 31/107 (28%), Positives = 59/107 (55%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
M +L V+D+ + LR ++ +TV A++ + N + DLV+ D+ +PD
Sbjct: 1 MNILIVEDNDAAASTISSILRLSYHDAKITVCRTGYEAVESV--NSDKADLVLLDLGLPD 58
Query: 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
M+G K+L+ + P+++++A D + V+K + GA +Y+ KP R
Sbjct: 59 MNGLKVLDEIHPITGAPIIVVTACEDEENVLKALEQGADEYITKPFR 105
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 153 (58.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 30/110 (27%), Positives = 63/110 (57%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
++ VDDD + L+ L++ + + L++L+ N N DL++ D+ MP+MDG+
Sbjct: 778 IMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNN-TNIDLILMDIMMPNMDGY 836
Query: 86 KLLELVGLEM---DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
+ +E + + + ++P++ L+A + K ++ GA DY+ KP+ + +L
Sbjct: 837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQL 886
>TIGR_CMR|SO_2426 [details] [associations]
symbol:SO_2426 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
KO:K02483 RefSeq:NP_718016.2 ProteinModelPortal:Q8EEF6
GeneID:1170140 KEGG:son:SO_2426 PATRIC:23524467 OMA:CLEMSRI
ProtClustDB:CLSK906726 Uniprot:Q8EEF6
Length = 227
Score = 141 (54.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/124 (33%), Positives = 62/124 (50%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDDD L L+ +EV + L +R D+V+ D+ MP MDG
Sbjct: 3 RILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGVEGLTCIRSFAP--DIVMLDLVMPQMDG 60
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
F+LL+ E P++MLSA + + ++ GA D+L KP ++EL Q + RR
Sbjct: 61 FELLQ--ARECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIERRLV 118
Query: 145 VDPK 148
PK
Sbjct: 119 QRPK 122
>UNIPROTKB|Q9KKK0 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 140 (54.3 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 42/123 (34%), Positives = 65/123 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA---ITALKMLRENRNNFDLVISDVYMP 80
MR+L V+DD + ++ L Y V R +TALK F +I D+ +P
Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKT-----EQFTALILDLTLP 55
Query: 81 DMDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DMDG ++L + LPV++L+A D +KG++ GA +Y+ KP +EEL + +
Sbjct: 56 DMDGLEVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLI 115
Query: 140 IRR 142
IRR
Sbjct: 116 IRR 118
>TIGR_CMR|VC_A1105 [details] [associations]
symbol:VC_A1105 "DNA-binding response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:Q9WYN0 KO:K02483 PIR:C82378
RefSeq:NP_233484.1 ProteinModelPortal:Q9KKK0 DNASU:2612779
GeneID:2612779 KEGG:vch:VCA1105 PATRIC:20086728 OMA:HGYTVDW
ProtClustDB:CLSK789271 Uniprot:Q9KKK0
Length = 218
Score = 140 (54.3 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 42/123 (34%), Positives = 65/123 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA---ITALKMLRENRNNFDLVISDVYMP 80
MR+L V+DD + ++ L Y V R +TALK F +I D+ +P
Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKT-----EQFTALILDLTLP 55
Query: 81 DMDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DMDG ++L + LPV++L+A D +KG++ GA +Y+ KP +EEL + +
Sbjct: 56 DMDGLEVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLI 115
Query: 140 IRR 142
IRR
Sbjct: 116 IRR 118
>TAIR|locus:2204518 [details] [associations]
symbol:AT1G14600 "AT1G14600" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AC010657 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AJ630486 EMBL:AY568658
IPI:IPI00523105 RefSeq:NP_172912.3 UniGene:At.41962
ProteinModelPortal:Q700D9 SMR:Q700D9 EnsemblPlants:AT1G14600.1
GeneID:838022 KEGG:ath:AT1G14600 TAIR:At1g14600 eggNOG:NOG329381
HOGENOM:HOG000239342 InParanoid:Q700D9 OMA:NIMNMER
Genevestigator:Q700D9 Uniprot:Q700D9
Length = 255
Score = 143 (55.4 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 34/71 (47%), Positives = 45/71 (63%)
Query: 192 PRVVWTTELHTKFIGAVNLLGLD-KAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLG 250
PR+ WT ELH F+ AV+LLG KA PK +L +M+V+GLT +V SHLQ +R S L
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLL 83
Query: 251 NKTLEAGMVAS 261
K E+ +S
Sbjct: 84 GKPEESSSPSS 94
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 138 (53.6 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 38/137 (27%), Positives = 73/137 (53%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLR----ENRNNF-----DLVI 74
+ VLAVDD K++E+ LR +VT AL+ L + +N +L++
Sbjct: 24 LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIV 83
Query: 75 SDVYMPDMDGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131
+D MP + G+ LL+ + ++PVV++S+ + + + + GA ++LLKPV++ +
Sbjct: 84 TDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLAD 143
Query: 132 LKNTWQHVIRRKKVDPK 148
+K Q ++R + + K
Sbjct: 144 VKRIKQLIMRNEAEECK 160
>TIGR_CMR|GSU_1039 [details] [associations]
symbol:GSU_1039 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00091
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR TIGRFAMs:TIGR00229 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 InterPro:IPR013656 Pfam:PF08448
ProtClustDB:CLSK703425 RefSeq:NP_952092.1 ProteinModelPortal:Q74EC4
SMR:Q74EC4 GeneID:2688726 KEGG:gsu:GSU1039 PATRIC:22024846
OMA:HIDTASE BioCyc:GSUL243231:GH27-1026-MONOMER Uniprot:Q74EC4
Length = 566
Score = 150 (57.9 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 46/143 (32%), Positives = 64/143 (44%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD+++ FL YEV + AL L FDLV +D+ + G
Sbjct: 5 ILVVDDEESLRYTFRCFLEHQGYEVAIAANYEEALAALPAG---FDLVFADIVLGGWTGV 61
Query: 86 KLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
LL L D+P VM++ Y + + GA DY+ KPV+ E + + IR
Sbjct: 62 DLLREARLRGFDVPFVMVTGYPHIDTASEALRLGAYDYIPKPVKQETIVRVARMAIRHHL 121
Query: 145 VDP-KDQNRSPHEFEKSYRKRKD 166
V KDQ RS E +R KD
Sbjct: 122 VSKEKDQYRS--NLEAIFRSVKD 142
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 148 (57.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 186 STTQKKPRVVWTTELHTKFIGAVNLLGLDK-AVPKKILDLMNVEGLTRENVASHLQKFRL 244
S + +K R W+ +LH +F+ A+ +LG + A PK+I +LM V+GLT + V SHLQK+RL
Sbjct: 228 SQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRL 287
Query: 245 SLKR 248
+R
Sbjct: 288 HTRR 291
>TIGR_CMR|CPS_4166 [details] [associations]
symbol:CPS_4166 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 Pfam:PF00072 Pfam:PF02518 PROSITE:PS50110
SMART:SM00387 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
Gene3D:3.30.565.10 SUPFAM:SSF55874 RefSeq:YP_270818.1
ProteinModelPortal:Q47WK4 STRING:Q47WK4 GeneID:3522071
KEGG:cps:CPS_4166 PATRIC:21471193
BioCyc:CPSY167879:GI48-4176-MONOMER Uniprot:Q47WK4
Length = 508
Score = 149 (57.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 35/107 (32%), Positives = 65/107 (60%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL VDD + I+++ +++ +Y V A TA+K+ + DL++ D+ MP++D
Sbjct: 155 LNVLVVDDIADNIAIIKELIKD-KYRVKAALNAKTAMKICLSDLPP-DLILLDIMMPEVD 212
Query: 84 GFKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127
G L + + L ++ V+ L+A S+T+ V+KG++ GA DY+ KP+
Sbjct: 213 GLTLCKQLKENPLTQNIVVIFLTALSETEDVVKGLSLGAVDYITKPI 259
>TIGR_CMR|SO_1946 [details] [associations]
symbol:SO_1946 "transcriptional regulatory protein PhoP"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07660
HSSP:Q9WYN0 RefSeq:NP_717553.1 ProteinModelPortal:Q8EFM4
GeneID:1169706 KEGG:son:SO_1946 PATRIC:23523521 OMA:PMEVTAF
ProtClustDB:CLSK906514 Uniprot:Q8EFM4
Length = 224
Score = 140 (54.3 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 40/121 (33%), Positives = 68/121 (56%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNN-FDLVISDVYMPDM 82
MR+L V+DD L+ L + +V V A+TA + + N D+ I D+ +PD
Sbjct: 1 MRILVVEDDLILSHHLKVQLSDLGNQVQV---ALTAKEGFFQATNYPIDVAIVDLGLPDQ 57
Query: 83 DGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
DG L++ + E + P+++L+A + + ++G+N GA DYL+KP + EEL ++R
Sbjct: 58 DGISLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVR 117
Query: 142 R 142
R
Sbjct: 118 R 118
>TIGR_CMR|CHY_2567 [details] [associations]
symbol:CHY_2567 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
KEGG:chy:CHY_2567 PATRIC:21278183
BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
Length = 236
Score = 141 (54.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/118 (26%), Positives = 63/118 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD+ + +++ +L + YEV AL + + DL++ D MP+M G
Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKP--DLIVLDWMMPEMSG 61
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
++L + + +P++ML+A ++ + G G DY++KP + EL + +++R
Sbjct: 62 IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR 119
>TIGR_CMR|SO_3594 [details] [associations]
symbol:SO_3594 "transcriptional regulatory protein RstA,
putative" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
KO:K02483 RefSeq:NP_719137.1 ProteinModelPortal:Q8EBD1
GeneID:1171260 KEGG:son:SO_3594 PATRIC:23526884 OMA:QYLLNID
ProtClustDB:CLSK907248 Uniprot:Q8EBD1
Length = 237
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 36/127 (28%), Positives = 66/127 (51%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL V+DD ++ +L+ V V R T L L + D+++ D+ +P +DG
Sbjct: 9 RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKP--DIILLDIMLPGIDG 66
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
L E + P++++SA ++ +KG+ GA DY++KPV L +++RR+
Sbjct: 67 LSLCEKLPDYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQN 126
Query: 145 VDPKDQN 151
P+ ++
Sbjct: 127 QPPQAES 133
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 148 (57.2 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 34/112 (30%), Positives = 63/112 (56%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L V+DD+ ++ L+E YEV LK L + + LVI+D+ MP M G
Sbjct: 3 RILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLE--KQEYHLVITDLVMPGMSG 60
Query: 85 FKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
++L V + ++ V++++ +++ + + + +GA DY+LKP +E K+T
Sbjct: 61 IEVLSRVKQKAPNVDVILVTGHANLESAVYALKNGARDYILKPFNHDEFKHT 112
>UNIPROTKB|Q9KNI9 [details] [associations]
symbol:VC_2749 "Nitrogen regulation protein NR(I)"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006808 "regulation of nitrogen utilization"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0009399 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
OMA:ARGQSNL GO:GO:0050906 TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038
RefSeq:NP_232375.1 ProteinModelPortal:Q9KNI9 SMR:Q9KNI9
DNASU:2614912 GeneID:2614912 KEGG:vch:VC2749 PATRIC:20084518
ProtClustDB:CLSK874911 Uniprot:Q9KNI9
Length = 468
Score = 148 (57.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 40/137 (29%), Positives = 67/137 (48%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VDDD + ++EK L + A + L L R D+++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALE--RETPDVLVSDIRMPGMDGI 65
Query: 86 KLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
LL V +LPV++++A+SD + GA +YL KP ++E ++ R
Sbjct: 66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLT----LVERAI 121
Query: 145 VDPKDQNRSPHEFEKSY 161
++Q ++ H ++Y
Sbjct: 122 AHGQEQRKTSHRPSENY 138
>TIGR_CMR|VC_2749 [details] [associations]
symbol:VC_2749 "nitrogen regulation protein NR(I)"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0009399 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 KO:K07712 OMA:ARGQSNL GO:GO:0050906
TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038 RefSeq:NP_232375.1
ProteinModelPortal:Q9KNI9 SMR:Q9KNI9 DNASU:2614912 GeneID:2614912
KEGG:vch:VC2749 PATRIC:20084518 ProtClustDB:CLSK874911
Uniprot:Q9KNI9
Length = 468
Score = 148 (57.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 40/137 (29%), Positives = 67/137 (48%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VDDD + ++EK L + A + L L R D+++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALE--RETPDVLVSDIRMPGMDGI 65
Query: 86 KLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
LL V +LPV++++A+SD + GA +YL KP ++E ++ R
Sbjct: 66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLT----LVERAI 121
Query: 145 VDPKDQNRSPHEFEKSY 161
++Q ++ H ++Y
Sbjct: 122 AHGQEQRKTSHRPSENY 138
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 140 (54.3 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 35/128 (27%), Positives = 68/128 (53%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD++ ++L +L + + V ALK E++ DL+I D+ +P++DG
Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHK--IDLIILDLMLPEIDGM 61
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145
++ + + +P++ML+A + + G+ GA DY++KP E+ + V+RR
Sbjct: 62 EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSG 121
Query: 146 DPKDQNRS 153
P+ + S
Sbjct: 122 IPEKEASS 129
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 125 (49.1 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 33/115 (28%), Positives = 62/115 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
R+L +D T +L ++ +EV + AL++L R DL+I+D+ MPD++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER--LDLIITDINMPDIN 60
Query: 84 GFKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKP---VRMEEL 132
G +L+ V + +P+ ++S + KG++ GA +YL+KP R+++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 125 (49.1 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 33/115 (28%), Positives = 62/115 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
R+L +D T +L ++ +EV + AL++L R DL+I+D+ MPD++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER--LDLIITDINMPDIN 60
Query: 84 GFKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKP---VRMEEL 132
G +L+ V + +P+ ++S + KG++ GA +YL+KP R+++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 140 (54.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 43/134 (32%), Positives = 69/134 (51%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDDD+ +L++ L + V V + AL++L ++ DL++ DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDS---IDLLLLDVMMPKKNG 59
Query: 85 FKLLELVGLEMDLPVVMLSAY-SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
L+ + PV+ML+A S+ V+ G+ GA DYL KP EL + ++RR
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVL-GLELGADDYLPKPFNDRELVARIRAILRRS 118
Query: 144 KVDPKDQ---NRSP 154
+ Q N SP
Sbjct: 119 HWSEQQQSSDNGSP 132
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 137 (53.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 39/141 (27%), Positives = 71/141 (50%)
Query: 4 EEKGGSSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKML 63
+E DED + P V+AVDD ++ LR +Y + AL++L
Sbjct: 73 DEDDDDDDDEDDEEEAAP--PYVMAVDDSSVDRAVITALLRRSKYR----DSGKRALEIL 126
Query: 64 RENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGAC 120
+ N ++I+D +MP+M G+ LL+ + +L PVV++S+ + + + + GA
Sbjct: 127 G-SEPNVSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAE 185
Query: 121 DYLLKPVRMEELKNTWQHVIR 141
D+LLKPVR ++ +++
Sbjct: 186 DFLLKPVRPADISRITSRMLQ 206
>TIGR_CMR|CPS_1388 [details] [associations]
symbol:CPS_1388 "transcriptional regulatory protein PhoP"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 KO:K07660 RefSeq:YP_268131.1
ProteinModelPortal:Q485Y4 STRING:Q485Y4 GeneID:3519903
KEGG:cps:CPS_1388 PATRIC:21465991 OMA:KASTMIN
ProtClustDB:CLSK907750 BioCyc:CPSY167879:GI48-1469-MONOMER
Uniprot:Q485Y4
Length = 224
Score = 139 (54.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 40/137 (29%), Positives = 71/137 (51%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
MR+L V+DDQ + L+K L Y V V + AL E ++D+ + D+ +P +D
Sbjct: 1 MRLLLVEDDQALQQELQKQLLLQNYSVDVASDGEIALFQGLEY--DYDIAVIDLGLPKID 58
Query: 84 GFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G +++ + + + P+++L+A + + G++ GA DYL KP +EEL + +IRR
Sbjct: 59 GTTVVKALREKGRNFPILILTARDRWQDKVSGLDAGADDYLTKPFHVEELTSRLNALIRR 118
Query: 143 KKVDPKDQ-NRSPHEFE 158
N P+ +
Sbjct: 119 SAGKASTMINNGPYSLD 135
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 38/142 (26%), Positives = 75/142 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD+ LE+ L++ Y+V AL+++RE + DLV+ D+ +P + G
Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQP--DLVLLDIQLPGISG 62
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
+ LE + + ++ V+M++A+ + + + GA DY+ KP ++E+ ++ RK
Sbjct: 63 LEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMS-----IVIRK 117
Query: 144 KVDPKDQNRSPHEFEKSYRKRK 165
++ D R +S + RK
Sbjct: 118 ALETSDLRREVQRL-RSEQSRK 138
>TIGR_CMR|SO_4718 [details] [associations]
symbol:SO_4718 "sigma-54 dependent response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:NP_720234.1 HSSP:P10958 ProteinModelPortal:Q8E8E7
GeneID:1172297 KEGG:son:SO_4718 PATRIC:23529099 OMA:GYADMDV
ProtClustDB:CLSK907789 Uniprot:Q8E8E7
Length = 460
Score = 147 (56.8 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 38/136 (27%), Positives = 70/136 (51%)
Query: 11 SDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNF 70
S D + P + VL VDD+ L K L + ++ + T +I + LR +R +F
Sbjct: 2 SQIDNNLKPLPSAVSVLIVDDEPGMRSFLNKALSK-KFALVETAGSIEDAEQLR-SRCHF 59
Query: 71 DLVISDVYMPDMDGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127
DL+I D+ +P G + E + G D V+ ++ Y+D ++ +K + GA D+++KP
Sbjct: 60 DLLIVDIRLPGRSGIEWSEALDEQGRRSD--VIFMTGYADLEVAIKALRAGASDFIMKPF 117
Query: 128 RMEELKNTWQHVIRRK 143
+E++ + I R+
Sbjct: 118 HLEQMMSAVDRCIERR 133
>TIGR_CMR|GSU_0842 [details] [associations]
symbol:GSU_0842 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR003018 InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50113 SMART:SM00065 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:NP_951899.2 GeneID:2685412
KEGG:gsu:GSU0842 PATRIC:22024443 HOGENOM:HOG000275881
ProtClustDB:CLSK828051 BioCyc:GSUL243231:GH27-843-MONOMER
Uniprot:Q74EW7
Length = 754
Score = 150 (57.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 40/132 (30%), Positives = 67/132 (50%)
Query: 18 DKFPIG--MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75
D P G R+L VDD++ + + LR Y+V T ++ ALK+ FDL+I+
Sbjct: 622 DGAPAGGDERILYVDDEEDLVATTGEMLRRLGYDVVATTGSVEALKLFTAQPGLFDLIIT 681
Query: 76 DVYMPDMDGFKLLE-LVGLEMDLPVVMLSAY--SDTKLVMKGINH-GACDYLLKPVRMEE 131
D MP + G +L L L D+PV++ S + D + +++ G D L KPV +E
Sbjct: 682 DQTMPLLTGTELTRALRRLRPDVPVLLCSGFIDQDERTILEQARSAGIADVLRKPVDRDE 741
Query: 132 LKNTWQHVIRRK 143
+ + ++ R+
Sbjct: 742 MARAVRRILDRR 753
>TIGR_CMR|CPS_4597 [details] [associations]
symbol:CPS_4597 "transcriptional regulatory protein OmpR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0007234 "osmosensory signaling via
phosphorelay pathway" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07659 ProtClustDB:PRK09468
RefSeq:YP_271244.1 ProteinModelPortal:Q47VC8 SMR:Q47VC8
STRING:Q47VC8 GeneID:3519604 KEGG:cps:CPS_4597 PATRIC:21472017
OMA:AANSEQM BioCyc:CPSY167879:GI48-4606-MONOMER Uniprot:Q47VC8
Length = 240
Score = 140 (54.3 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 37/120 (30%), Positives = 62/120 (51%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDDD +LE++L E + V + ++L R NF L++ D+ +P DG
Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLE--RENFHLLVLDLMLPGEDG 64
Query: 85 FKLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
+ + + +P+VML+A D + G+ GA DY+ KP EL + V+RR+
Sbjct: 65 LSICRRLRQNSNNIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRRR 124
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 145 (56.1 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 33/118 (27%), Positives = 66/118 (55%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT-NRAITALKMLR----ENRNN-FDLVISDV 77
M +L VDD+ + +++K L++ Y+ V+ N A + + +R+N DL++ D+
Sbjct: 1 MSILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDI 60
Query: 78 YMPDMDGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
MP++DG ++ + E D+P++ ++A D + + ++ GA DY+ KP+ EL
Sbjct: 61 MMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVEL 118
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 124 (48.7 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 37/117 (31%), Positives = 58/117 (49%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDMD 83
RV+ VDD +L L + YEV + A+ R+ R D+V D+ MP +
Sbjct: 4 RVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEAVVTFRDVRP--DVVTLDIIMPVKN 61
Query: 84 GFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
G + L E++ ++ VV+ SA LV K + GA D++LKP E +K+ + V
Sbjct: 62 GIEALREIMAIDPKARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMKQV 118
>TIGR_CMR|BA_2561 [details] [associations]
symbol:BA_2561 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:Q9WYN0 RefSeq:NP_844929.1
RefSeq:YP_019199.1 RefSeq:YP_028645.1 ProteinModelPortal:Q81Q72
DNASU:1085788 EnsemblBacteria:EBBACT00000009128
EnsemblBacteria:EBBACT00000014330 EnsemblBacteria:EBBACT00000023961
GeneID:1085788 GeneID:2819548 GeneID:2848970 KEGG:ban:BA_2561
KEGG:bar:GBAA_2561 KEGG:bat:BAS2385 OMA:LETVMNG
ProtClustDB:CLSK916690 BioCyc:BANT260799:GJAJ-2450-MONOMER
BioCyc:BANT261594:GJ7F-2538-MONOMER Uniprot:Q81Q72
Length = 231
Score = 139 (54.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 35/117 (29%), Positives = 64/117 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L +DDD+ +++L +LR Y + AL+M+ + DL+I D+ MP +G
Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI--STYEVDLMILDIMMPKRNGL 62
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
++ + V +P++MLSA ++ + G+ GA DY++KP EL + ++RR
Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 138 (53.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M++L ++D+Q + + + L E Y + + L + ++++ L+I D+ +P MD
Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL--KDDYALIILDIMLPGMD 58
Query: 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
G+++L+ + PV+ L+A ++G++ GA DYL+KP EL
Sbjct: 59 GWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSEL 107
>TIGR_CMR|DET_0304 [details] [associations]
symbol:DET_0304 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181052.1
ProteinModelPortal:Q3Z9P7 GeneID:3230335 KEGG:det:DET0304
PATRIC:21607681 OMA:KMELIAR ProtClustDB:CLSK741611
BioCyc:DETH243164:GJNF-304-MONOMER Uniprot:Q3Z9P7
Length = 223
Score = 138 (53.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 40/140 (28%), Positives = 75/140 (53%)
Query: 25 RVLAVDDD-QTCLKILEKF-LRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
R+L V+DD +T + F L E+ +++L E + ++I D+ +PD+
Sbjct: 3 RILIVEDDFKTADAFVSIFKLTWPNAEIFTAQTGWEGIRLLEEYSPH--IIILDIGLPDI 60
Query: 83 DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+GF+++ + D+P+++++A +D V+K + GA D++ KP R EL + +IR+
Sbjct: 61 NGFEVISEIRHFTDIPIMVITARTDELDVVKALELGANDFISKPPRKMELIARIKALIRK 120
Query: 143 KKVDPKDQNRSPHEFEKSYR 162
K VD D + F+K R
Sbjct: 121 KSVD--DLSFGNINFDKIQR 138
>TIGR_CMR|SPO_2087 [details] [associations]
symbol:SPO_2087 "nitrogen regulation protein NtrC"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0009399
"nitrogen fixation" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 KO:K07712 RefSeq:YP_167317.1
ProteinModelPortal:Q5LRN8 DNASU:3195357 GeneID:3195357
KEGG:sil:SPO2087 PATRIC:23377515 OMA:YEEAGSA ProtClustDB:CLSK933754
Uniprot:Q5LRN8
Length = 457
Score = 146 (56.5 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL DDD+T +L + L +V T+ T ++ + E + D+VISDV MPD +G
Sbjct: 5 VLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVAEGKG--DVVISDVVMPDGNGL 62
Query: 86 KLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
++L + + LPV+++SA + ++ A DYL KP + +L + +K+
Sbjct: 63 EMLPKIAQDRPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRTARALEQKR 122
>TIGR_CMR|CPS_2387 [details] [associations]
symbol:CPS_2387 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_269105.1
ProteinModelPortal:Q482B3 STRING:Q482B3 GeneID:3521255
KEGG:cps:CPS_2387 PATRIC:21467857
BioCyc:CPSY167879:GI48-2450-MONOMER Uniprot:Q482B3
Length = 236
Score = 139 (54.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 40/125 (32%), Positives = 64/125 (51%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNN--FDLVISDVYMPDMD 83
+L VDD+ + L ++L + VT ++ K +RE N DL++ D+ MP D
Sbjct: 4 ILIVDDNPDIRQPLARYLGDHGMRVT----SVDGGKAMRETLKNSVIDLILLDIMMPGED 59
Query: 84 GFKLLELVGLEMDLPVVMLSAYS-DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G L V + +PV++L+A + DT V+ G+ GA DY+ KP L + V+RR
Sbjct: 60 GLSLCRFVQSNLKIPVILLTALTEDTDRVV-GLEMGADDYVAKPFNPRVLLAKIKAVLRR 118
Query: 143 KKVDP 147
+ P
Sbjct: 119 SQSFP 123
>TIGR_CMR|SPO_1624 [details] [associations]
symbol:SPO_1624 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_166865.1 ProteinModelPortal:Q5LSZ0 GeneID:3193367
KEGG:sil:SPO1624 PATRIC:23376571 OMA:FAVECAG Uniprot:Q5LSZ0
Length = 226
Score = 138 (53.6 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 41/142 (28%), Positives = 67/142 (47%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL V+DD + L K E + V L + FD ++ D +P +DG
Sbjct: 4 RVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDG--GFDAMVLDRMLPGLDG 61
Query: 85 FKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
L++ V ++ PV+ML+A S +KG+ GA DYL+KP +EL + ++RR
Sbjct: 62 LALIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRP 121
Query: 144 KVDPKDQNRSPHEFEKSYRKRK 165
+ + + + E +RK
Sbjct: 122 QDTQEATVLACRDLEMDLMRRK 143
>TAIR|locus:2163852 [details] [associations]
symbol:ATS "AT5G42630" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048481 "ovule development" evidence=IMP] [GO:0080060
"integument development" evidence=IGI;IMP] [GO:0005618 "cell wall"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0005618 GO:GO:0030154 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0044212
PROSITE:PS51293 HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0080060 HOGENOM:HOG000241649 EMBL:AB013391
EMBL:AY048691 EMBL:BT026053 IPI:IPI00541325 IPI:IPI00892123
RefSeq:NP_001119363.1 RefSeq:NP_199077.1 UniGene:At.26412
ProteinModelPortal:Q9FJV5 SMR:Q9FJV5 STRING:Q9FJV5
EnsemblPlants:AT5G42630.1 GeneID:834270 KEGG:ath:AT5G42630
TAIR:At5g42630 eggNOG:NOG280455 InParanoid:Q9FJV5 OMA:PQIYGRD
PhylomeDB:Q9FJV5 ProtClustDB:CLSN2916355 Genevestigator:Q9FJV5
Uniprot:Q9FJV5
Length = 276
Score = 141 (54.7 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 190 KKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFR 243
+ PR+ WT+ LH F+ AV LLG ++A PK +L+LMNV+ LT +V SHLQ +R
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 158
>TAIR|locus:2170199 [details] [associations]
symbol:AT5G06800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AK226644 IPI:IPI00528070
RefSeq:NP_196298.2 UniGene:At.50439 ProteinModelPortal:Q0WVU3
SMR:Q0WVU3 PRIDE:Q0WVU3 EnsemblPlants:AT5G06800.1 GeneID:830570
KEGG:ath:AT5G06800 TAIR:At5g06800 eggNOG:NOG298644
HOGENOM:HOG000241107 InParanoid:Q0WVU3 OMA:MDNINFE
ProtClustDB:CLSN2918619 Genevestigator:Q0WVU3 Uniprot:Q0WVU3
Length = 375
Score = 144 (55.7 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 191 KPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRLS 245
K R+ WT +LH KF+ VN LG DKA PK IL M+ +GLT +V SHLQK+R++
Sbjct: 192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIA 247
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 123 (48.4 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 30/111 (27%), Positives = 60/111 (54%)
Query: 25 RVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++L VDD +++ L+ ++EV + A++ +E + D+V D+ MP+M
Sbjct: 4 KILVVDDAMFMRTMIKNLLKSNSEFEVIGEAENGVEAIQKYKELQP--DIVTLDITMPEM 61
Query: 83 DGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
DG + L E++ ++ VV+ SA +V+ I GA D+++KP + + +
Sbjct: 62 DGLEALKEIIKIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQADRV 112
>TAIR|locus:2028346 [details] [associations]
symbol:KAN2 "AT1G32240" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048481 "ovule
development" evidence=IGI] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=IGI] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0030154 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
GO:GO:0048481 EMBL:AC084110 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009944
HOGENOM:HOG000241649 EMBL:AY048689 EMBL:BT029211 EMBL:AB493491
IPI:IPI00539948 RefSeq:NP_564392.1 UniGene:At.25340
ProteinModelPortal:Q9C616 SMR:Q9C616 STRING:Q9C616
EnsemblPlants:AT1G32240.1 GeneID:840116 KEGG:ath:AT1G32240
TAIR:At1g32240 eggNOG:NOG325874 InParanoid:Q9C616 OMA:SDVYENG
PhylomeDB:Q9C616 ProtClustDB:CLSN2715231 Genevestigator:Q9C616
Uniprot:Q9C616
Length = 388
Score = 144 (55.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 188 TQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFR 243
+ + PR+ WTT LH +F+ AV LLG ++A PK +L+LM+V+ LT +V SHLQ +R
Sbjct: 210 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 266
>TIGR_CMR|CPS_2013 [details] [associations]
symbol:CPS_2013 "C4-dicarboxylate transport
transcriptional regulatory protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:YP_268743.1 ProteinModelPortal:Q483M3 STRING:Q483M3
GeneID:3520238 KEGG:cps:CPS_2013 PATRIC:21467153 KO:K10126
OMA:RKHGLNF ProtClustDB:CLSK907021
BioCyc:CPSY167879:GI48-2083-MONOMER Uniprot:Q483M3
Length = 453
Score = 145 (56.1 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 31/121 (25%), Positives = 66/121 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V +DD++ +E+ +EV ++A L L + +VISD+ MP MDG
Sbjct: 9 VFVIDDEEHIRSAIEQTFELRNFEVQTFSQAHQLLNQLSDTWPG--VVISDINMPKMDGH 66
Query: 86 KLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
+L+ E+ ++ +L ++L+ + D + +K + +GA D++ KP ++L +T + + ++
Sbjct: 67 QLMAEVKNIDSELSTILLTGFGDISMAVKAMRNGAYDFIEKPFNNDDLVDTVKRALDKRS 126
Query: 145 V 145
+
Sbjct: 127 L 127
>UNIPROTKB|O69730 [details] [associations]
symbol:tcrX "Probable transcriptional regulatory protein
TcrX" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0010106 "cellular response to
iron ion starvation" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677 EMBL:BX842584
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0010106
HOGENOM:HOG000034815 HSSP:Q9WYN0 KO:K02483 EMBL:X99370 PIR:F70801
RefSeq:NP_218282.1 RefSeq:YP_006517260.1 ProteinModelPortal:O69730
SMR:O69730 EnsemblBacteria:EBMYCT00000002612 GeneID:13317384
GeneID:886100 KEGG:mtu:Rv3765c KEGG:mtv:RVBD_3765c PATRIC:18156979
TubercuList:Rv3765c OMA:TELLSMA ProtClustDB:CLSK792706
Uniprot:O69730
Length = 234
Score = 138 (53.6 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 38/125 (30%), Positives = 63/125 (50%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL VDD+ +++ LR + +T +A+ R R D+V+ DV +PDM G
Sbjct: 11 VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRP--DVVVLDVMLPDMSGL 68
Query: 86 KLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
+L + E LPV++L+A + + G+ G DY+ KP +EE+ + ++RR
Sbjct: 69 DVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 128
Query: 145 VDPKD 149
V D
Sbjct: 129 VTTVD 133
>CGD|CAL0003772 [details] [associations]
symbol:SKN7 species:5476 "Candida albicans" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:1900436
"positive regulation of filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:1900445
"positive regulation of filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0034599
"cellular response to oxidative stress" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0000747 "conjugation with cellular
fusion" evidence=IEA] [GO:0035690 "cellular response to drug"
evidence=IEA] [GO:0008361 "regulation of cell size" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IEA] [GO:0000304
"response to singlet oxygen" evidence=IEA] [GO:0009405
"pathogenesis" evidence=IEA] [GO:0000981 "sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] InterPro:IPR000232 InterPro:IPR001789
InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
SMART:SM00448 CGD:CAL0003772 GO:GO:0005634 GO:GO:0071216
GO:GO:0036180 GO:GO:1900445 GO:GO:0034599 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009267
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
GO:GO:0036170 EMBL:AACQ01000063 EMBL:AACQ01000062 GO:GO:1900436
KO:K15859 RefSeq:XP_716809.1 RefSeq:XP_716869.1
ProteinModelPortal:Q5A4X5 STRING:Q5A4X5 GeneID:3641499
GeneID:3641563 KEGG:cal:CaO19.8586 KEGG:cal:CaO19.971
Uniprot:Q5A4X5
Length = 559
Score = 146 (56.5 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 35/141 (24%), Positives = 73/141 (51%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL V+DD C+++ KFL + VTV + A+ + + +DLV+ D+ MP++DG
Sbjct: 426 VLLVEDDNVCIQLCRKFLVKYGCSVTVVTDGLNAISTVEHTK--YDLVLMDIVMPNLDGA 483
Query: 86 KLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
++ + P++ ++ + ++ + +G D L KP ++L ++ +
Sbjct: 484 TATSVIRSFDTKTPIIAMTGNIEDNDLVTYLQNGMSDILAKPFTKDDL----YAILSKHL 539
Query: 145 VDPKDQNRSPHEFEKSYRKRK 165
+DPK+ N+ +E + +K+K
Sbjct: 540 LDPKE-NKQDNE--PTVKKQK 557
>UNIPROTKB|Q5A4X5 [details] [associations]
symbol:SKN7 "Potential HSF-type DNA binding transcription
factor" species:237561 "Candida albicans SC5314" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0034599
"cellular response to oxidative stress" evidence=IMP] [GO:0035556
"intracellular signal transduction" evidence=ISS] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] [GO:1900436 "positive regulation of
filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
InterPro:IPR000232 InterPro:IPR001789 InterPro:IPR014402
Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595 PRINTS:PR00056
PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415 SMART:SM00448
CGD:CAL0003772 GO:GO:0005634 GO:GO:0071216 GO:GO:0036180
GO:GO:1900445 GO:GO:0034599 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009267 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0036170
EMBL:AACQ01000063 EMBL:AACQ01000062 GO:GO:1900436 KO:K15859
RefSeq:XP_716809.1 RefSeq:XP_716869.1 ProteinModelPortal:Q5A4X5
STRING:Q5A4X5 GeneID:3641499 GeneID:3641563 KEGG:cal:CaO19.8586
KEGG:cal:CaO19.971 Uniprot:Q5A4X5
Length = 559
Score = 146 (56.5 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 35/141 (24%), Positives = 73/141 (51%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL V+DD C+++ KFL + VTV + A+ + + +DLV+ D+ MP++DG
Sbjct: 426 VLLVEDDNVCIQLCRKFLVKYGCSVTVVTDGLNAISTVEHTK--YDLVLMDIVMPNLDGA 483
Query: 86 KLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
++ + P++ ++ + ++ + +G D L KP ++L ++ +
Sbjct: 484 TATSVIRSFDTKTPIIAMTGNIEDNDLVTYLQNGMSDILAKPFTKDDL----YAILSKHL 539
Query: 145 VDPKDQNRSPHEFEKSYRKRK 165
+DPK+ N+ +E + +K+K
Sbjct: 540 LDPKE-NKQDNE--PTVKKQK 557
>UNIPROTKB|P96373 [details] [associations]
symbol:kdpE "Transcriptional regulatory protein KdpE"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0040007 GO:GO:0006355 EMBL:BX842575 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 KO:K07667 PIR:F70623 RefSeq:NP_215543.1
RefSeq:NP_335494.1 RefSeq:YP_006514389.1 HSSP:P08402
ProteinModelPortal:P96373 SMR:P96373
EnsemblBacteria:EBMYCT00000002976 EnsemblBacteria:EBMYCT00000071258
GeneID:13319591 GeneID:886046 GeneID:925129 KEGG:mtc:MT1056
KEGG:mtu:Rv1027c KEGG:mtv:RVBD_1027c PATRIC:18124070
TubercuList:Rv1027c OMA:RAMQINL ProtClustDB:CLSK790901
Uniprot:P96373
Length = 226
Score = 137 (53.3 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL +DD+ L+ L L Y+V + AL+ E+ D+VI D+ +PDM G
Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPP--DVVILDLGLPDMSGI 61
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+L + + PV++LSA +D+ ++ ++ GA DY+ KP M+E + +RR
Sbjct: 62 DVLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRR 118
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 122 (48.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 27/110 (24%), Positives = 62/110 (56%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + ++ Y+ AL +++ ++N DLV+ D+ +P MDG
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVK--KDNPDLVVLDMKIPGMDG 61
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
++L+ V ++ + V++++AY + ++ + + GA + KP ++E++
Sbjct: 62 IEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111
>UNIPROTKB|Q74CN0 [details] [associations]
symbol:GSU1643 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205
ProtClustDB:CLSK740862 RefSeq:NP_952694.1 ProteinModelPortal:Q74CN0
GeneID:2687340 KEGG:gsu:GSU1643 PATRIC:22026135 OMA:CIRIIAG
BioCyc:GSUL243231:GH27-1627-MONOMER Uniprot:Q74CN0
Length = 316
Score = 141 (54.7 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 43/124 (34%), Positives = 66/124 (53%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL +D+ +LE LRE Y+V V AL ++ F LVI+D MP MDG
Sbjct: 12 VLIAEDNALLRAVLEGNLREIGYDVVVAIDGKDALARIQSGY--FPLVITDWVMPVMDGP 69
Query: 86 KLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+L V GLE +++L++ + ++ G+ GA +YL+KPV EEL T + + R
Sbjct: 70 ELCRAVRSLGLEHYTYLILLTSRDSKESIISGLEAGADEYLVKPVTPEEL--TVRLMTAR 127
Query: 143 KKVD 146
+ +D
Sbjct: 128 RIID 131
>TIGR_CMR|GSU_1643 [details] [associations]
symbol:GSU_1643 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205
ProtClustDB:CLSK740862 RefSeq:NP_952694.1 ProteinModelPortal:Q74CN0
GeneID:2687340 KEGG:gsu:GSU1643 PATRIC:22026135 OMA:CIRIIAG
BioCyc:GSUL243231:GH27-1627-MONOMER Uniprot:Q74CN0
Length = 316
Score = 141 (54.7 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 43/124 (34%), Positives = 66/124 (53%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL +D+ +LE LRE Y+V V AL ++ F LVI+D MP MDG
Sbjct: 12 VLIAEDNALLRAVLEGNLREIGYDVVVAIDGKDALARIQSGY--FPLVITDWVMPVMDGP 69
Query: 86 KLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+L V GLE +++L++ + ++ G+ GA +YL+KPV EEL T + + R
Sbjct: 70 ELCRAVRSLGLEHYTYLILLTSRDSKESIISGLEAGADEYLVKPVTPEEL--TVRLMTAR 127
Query: 143 KKVD 146
+ +D
Sbjct: 128 RIID 131
>UNIPROTKB|P14376 [details] [associations]
symbol:rcsC "RcsC sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
"protein autophosphorylation" evidence=IMP] [GO:0044010
"single-species biofilm formation" evidence=IMP] [GO:0071470
"cellular response to osmotic stress" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
Genevestigator:P14376 Uniprot:P14376
Length = 949
Score = 148 (57.2 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 36/113 (31%), Positives = 63/113 (55%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M +L VDD ++L L Y+ N + AL +L ++N+ D+V+SDV MP+MD
Sbjct: 825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMD 882
Query: 84 GFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
G++L + + L + LPV+ ++A + + + + G L KPV ++ +K T
Sbjct: 883 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQT 935
>TIGR_CMR|BA_3067 [details] [associations]
symbol:BA_3067 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
ProteinModelPortal:Q81NV5 DNASU:1088217
EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
OMA:LTKEHFF ProtClustDB:CLSK886597
BioCyc:BANT260799:GJAJ-2916-MONOMER
BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
Length = 223
Score = 136 (52.9 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 33/108 (30%), Positives = 59/108 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+DD +L+K L+ +Y V L ++ E DLV+ DV +P DG+
Sbjct: 6 ILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHE----IDLVVMDVMLPGEDGY 61
Query: 86 KLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
++ + + L +++P++ LSA +D +KG+ G +Y++KP EL
Sbjct: 62 QITKKIKNLGLNIPIIFLSARNDMDSKLKGLTIGE-EYMIKPFDPREL 108
>TIGR_CMR|CJE_1397 [details] [associations]
symbol:CJE_1397 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_179383.1
ProteinModelPortal:Q5HTK2 STRING:Q5HTK2 GeneID:3231903
KEGG:cjr:CJE1397 PATRIC:20044596 OMA:CREIREK ProtClustDB:CLSK879174
BioCyc:CJEJ195099:GJC0-1424-MONOMER Uniprot:Q5HTK2
Length = 223
Score = 136 (52.9 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 36/143 (25%), Positives = 71/143 (49%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL ++DD ++L ++L Q+ + +TN L +D +I D+ +P +D
Sbjct: 2 INVLMIEDDPDFAQLLSEYL--AQFNIKITNFE-NPKSALNVGIQGYDCLILDLTLPGID 58
Query: 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR- 142
G ++ + + ++P+++ SA D + G+ GA DYL KP +E+ +IRR
Sbjct: 59 GLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRT 118
Query: 143 KKVDPKDQNRSPHEFEKSYRKRK 165
K+V+ + F+ R+ +
Sbjct: 119 KRVEHTNNENINSAFKIDERRHE 141
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 138 (53.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL VDD +K+L+ L Y V + A+K+ E D+++ DV MP+MDG
Sbjct: 4 KVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEEKHP--DIILLDVMMPEMDG 61
Query: 85 FKLLELVGLEMD---LPVVMLSAYSDTK-LVMKGINHGACDYLLKPV 127
++ + + + +P+VM++A +T + G+++GA D+L KP+
Sbjct: 62 YETCKRLKSNPETTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPI 108
Score = 49 (22.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 14/55 (25%), Positives = 33/55 (60%)
Query: 444 LNQAYFDLGVHDS-SNFLDHGRC---------QESWQDAVQLSKSSSISLPLGEP 488
L++A FD+G+HD +N +D ++ +QDA++++ +S+++ + +P
Sbjct: 245 LSKA-FDIGIHDYITNPIDSNELIARVNVQVKRKRYQDALRINVDNSMAMAITDP 298
>TIGR_CMR|SO_4428 [details] [associations]
symbol:SO_4428 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
HSSP:P06143 RefSeq:NP_719949.1 ProteinModelPortal:Q8E961
GeneID:1172025 KEGG:son:SO_4428 PATRIC:23528509 OMA:PNQVISR
ProtClustDB:CLSK907640 Uniprot:Q8E961
Length = 225
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 37/125 (29%), Positives = 61/125 (48%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M++L V+DD T + + K E + + + L L+ +DL+I D +P +D
Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGL--LQATSGQYDLLILDRMLPQLD 58
Query: 84 GFKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G KLL L PV++LSA + +KG+ G DY+ KP EL + +++R
Sbjct: 59 GLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQR 118
Query: 143 KKVDP 147
+ P
Sbjct: 119 GQSTP 123
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L VDD T +I++ L YE V + A + L N + ++I+D MP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWNMPEM 59
Query: 83 DGFKLLELVGLEM---DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
+G L++ V + ++P++M++ V+ + G +Y++KP + LK + V
Sbjct: 60 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
Query: 140 I 140
+
Sbjct: 120 L 120
>UNIPROTKB|Q747L2 [details] [associations]
symbol:GSU3253 "Response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0035556 "intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 RefSeq:NP_954294.1 ProteinModelPortal:Q747L2
GeneID:2688275 KEGG:gsu:GSU3253 PATRIC:22029347 OMA:LCTAFSC
ProtClustDB:CLSK829186 BioCyc:GSUL243231:GH27-3229-MONOMER
Uniprot:Q747L2
Length = 123
Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 37/122 (30%), Positives = 64/122 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD+ + + + L E +EV A A+ +RE+ FDL++ D+ + + G
Sbjct: 3 RLLVVDDENSIRLLYSQELAEEGHEVVTAATAAEAVDKIREHE--FDLIVLDIKLKNESG 60
Query: 85 FKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACD-YLLKPVRMEELKNTWQHVIRR 142
LL+ V E +LPVV+ +A+S K + D Y++K + ELK + V+ +
Sbjct: 61 LDLLQKVVKERHNLPVVLCTAFSCFK---DDFSAWLADGYVVKSSDLSELKEEVKRVLAK 117
Query: 143 KK 144
+K
Sbjct: 118 RK 119
>TIGR_CMR|GSU_3253 [details] [associations]
symbol:GSU_3253 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_954294.1 ProteinModelPortal:Q747L2 GeneID:2688275
KEGG:gsu:GSU3253 PATRIC:22029347 OMA:LCTAFSC ProtClustDB:CLSK829186
BioCyc:GSUL243231:GH27-3229-MONOMER Uniprot:Q747L2
Length = 123
Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 37/122 (30%), Positives = 64/122 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD+ + + + L E +EV A A+ +RE+ FDL++ D+ + + G
Sbjct: 3 RLLVVDDENSIRLLYSQELAEEGHEVVTAATAAEAVDKIREHE--FDLIVLDIKLKNESG 60
Query: 85 FKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACD-YLLKPVRMEELKNTWQHVIRR 142
LL+ V E +LPVV+ +A+S K + D Y++K + ELK + V+ +
Sbjct: 61 LDLLQKVVKERHNLPVVLCTAFSCFK---DDFSAWLADGYVVKSSDLSELKEEVKRVLAK 117
Query: 143 KK 144
+K
Sbjct: 118 RK 119
>TIGR_CMR|BA_5068 [details] [associations]
symbol:BA_5068 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0
RefSeq:NP_847259.1 RefSeq:YP_021717.1 RefSeq:YP_030951.1
ProteinModelPortal:Q81KD2 DNASU:1084352
EnsemblBacteria:EBBACT00000008736 EnsemblBacteria:EBBACT00000013851
EnsemblBacteria:EBBACT00000021438 GeneID:1084352 GeneID:2816207
GeneID:2851510 KEGG:ban:BA_5068 KEGG:bar:GBAA_5068 KEGG:bat:BAS4707
OMA:FMKNQGI ProtClustDB:CLSK917509
BioCyc:BANT260799:GJAJ-4761-MONOMER
BioCyc:BANT261594:GJ7F-4923-MONOMER Uniprot:Q81KD2
Length = 229
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 54/211 (25%), Positives = 86/211 (40%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+D+ +IL+ + QY V AL + E DLVI D+ +P++DG+
Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEE--VDLVILDIMLPELDGW 62
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145
+ + ++P++ML+A D + G GA DY+ KP L + ++ +KV
Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122
Query: 146 -----DPKDQNRSPHEFEKSYRKRKDQXXXXXXXXXXXXXH-ENEN-STTQKKPRVVWTT 198
+ +D S H + R H E E + K P +V T
Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSR----TVTVNKTDINLTHTEFEILAYFMKNPGIVLTR 178
Query: 199 ELHTKFIGAVNLLGLDKAVPKKILDLMNVEG 229
E I G D+ V I +L N G
Sbjct: 179 EQLISRIWGYEFAGDDRTVNSHIRNLRNKLG 209
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 44/114 (38%), Positives = 61/114 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYE-VTVTN--RAITALKMLRENRNNFDLVISDVYMPD 81
++L V+DD + + L L QY+ + V + AI ALK ++ FDLVISDV MP
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALK-----QHQFDLVISDVQMPG 59
Query: 82 MDGFKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
+ G LL L LPV++++AY+ + I GA DYL KP E L N
Sbjct: 60 IGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 44/114 (38%), Positives = 61/114 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYE-VTVTN--RAITALKMLRENRNNFDLVISDVYMPD 81
++L V+DD + + L L QY+ + V + AI ALK ++ FDLVISDV MP
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALK-----QHQFDLVISDVQMPG 59
Query: 82 MDGFKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
+ G LL L LPV++++AY+ + I GA DYL KP E L N
Sbjct: 60 IGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|GSU_0598 [details] [associations]
symbol:GSU_0598 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951656.1 ProteinModelPortal:Q74FK9 GeneID:2688651
KEGG:gsu:GSU0598 PATRIC:22023947 OMA:SGMEVLK ProtClustDB:CLSK827940
BioCyc:GSUL243231:GH27-583-MONOMER Uniprot:Q74FK9
Length = 470
Score = 149 (57.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 33/121 (27%), Positives = 68/121 (56%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL VDD+ + L + L + Y V + AL+ L++ N+ LVI+D+ MP M G
Sbjct: 6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDE--NYGLVITDLKMPGMSGM 63
Query: 86 KLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
++L+ + L+ ++PV++++ +S ++ + +GA DY+ KP +++ + + ++
Sbjct: 64 EVLKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQITEKVRKALEQRA 123
Query: 145 V 145
V
Sbjct: 124 V 124
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 229 GLTRENVASHLQKFRLSLK 247
G+ R N + L+K R+S++
Sbjct: 447 GMLRPNFQALLKKLRISVR 465
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 34/129 (26%), Positives = 65/129 (50%)
Query: 29 VDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88
V+D + + +L ++ + A++ + R DL++ D+ +PDM G +L
Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESI--GRREPDLILLDLRLPDMTGMDVL 59
Query: 89 ELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK--- 144
V + D+P+V ++A+ ++ + HGA D+L+KP + L+ T + IR+
Sbjct: 60 YAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLK 119
Query: 145 --VDPKDQN 151
VD K+QN
Sbjct: 120 NDVDNKNQN 128
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 34/129 (26%), Positives = 65/129 (50%)
Query: 29 VDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88
V+D + + +L ++ + A++ + R DL++ D+ +PDM G +L
Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESI--GRREPDLILLDLRLPDMTGMDVL 59
Query: 89 ELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK--- 144
V + D+P+V ++A+ ++ + HGA D+L+KP + L+ T + IR+
Sbjct: 60 YAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLK 119
Query: 145 --VDPKDQN 151
VD K+QN
Sbjct: 120 NDVDNKNQN 128
>TIGR_CMR|GSU_0776 [details] [associations]
symbol:GSU_0776 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951833.1 ProteinModelPortal:Q74F33 GeneID:2685232
KEGG:gsu:GSU0776 PATRIC:22024313 OMA:KELPIWR ProtClustDB:CLSK828021
BioCyc:GSUL243231:GH27-778-MONOMER Uniprot:Q74F33
Length = 465
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/110 (30%), Positives = 60/110 (54%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRN-NFDLVISDVYMPDMD 83
++L DD++ + L+K + ++EV + L + + + D+++ DV MPDMD
Sbjct: 5 KILICDDEEGIRRYLQKMFQAKEFEVETFADGTSLLARIEAGTDGDADILLQDVRMPDMD 64
Query: 84 GFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
G ++L+ V L LPVV+++A+ + I GA DY+ KP E++
Sbjct: 65 GIEVLKRVKKLRPSLPVVVMTAFGTIDSAVDAIKLGAYDYVTKPFPREKI 114
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/106 (33%), Positives = 59/106 (55%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
+ ++VL V+DD+ + L L ++ A AL+ + F LV+SDV MP
Sbjct: 1 MAIKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEP--FSLVVSDVNMPG 58
Query: 82 MDGFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
MDG +LL L+ + LPV++++A+ + ++ + GA DYL+KP
Sbjct: 59 MDGHQLLGLLRARQPQLPVLLMTAHGAVERAVEAMRQGAADYLVKP 104
>TIGR_CMR|CPS_1426 [details] [associations]
symbol:CPS_1426 "transcriptional regulatory protein RstA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_268169.1
ProteinModelPortal:Q485U6 STRING:Q485U6 GeneID:3518469
KEGG:cps:CPS_1426 PATRIC:21466063 ProtClustDB:CLSK749833
BioCyc:CPSY167879:GI48-1507-MONOMER Uniprot:Q485U6
Length = 248
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 34/118 (28%), Positives = 64/118 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+DD + + +L +++VT +R A+ +++ N D+V+ D +P MDG
Sbjct: 9 ILLVEDDIDLAEWIADYLIGREFKVTTCHRGDDAVDLIQSL--NPDIVLLDGMLPGMDGL 66
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
+ + V D P++M++A + + G+ GA DY+ KPVR L + ++RR+
Sbjct: 67 DVCKTVRATFDNPIIMITARDEEIDEVLGLEMGADDYITKPVRARVLLARIRGLLRRE 124
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 38/112 (33%), Positives = 57/112 (50%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
+ + VL V+DD++ + L + L Y A AL + F LVISDV MP
Sbjct: 1 MSINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPG 58
Query: 82 MDGFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
MDG +LL L+ LPV++++A+ + + GA DYL+KP + L
Sbjct: 59 MDGHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKAL 110
>UNIPROTKB|Q9KUA1 [details] [associations]
symbol:VC_0622 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 148 (57.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
G +L DD+ L++L+ FLR Y V L+ ++ R +LV+ D+ MP M
Sbjct: 769 GPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIK--REKPELVLLDIMMPGM 826
Query: 83 DGFKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
G+++ E + D LP++ML+A + + ++G GA DYL KP +EL
Sbjct: 827 SGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQEL 879
>TIGR_CMR|VC_0622 [details] [associations]
symbol:VC_0622 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 148 (57.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
G +L DD+ L++L+ FLR Y V L+ ++ R +LV+ D+ MP M
Sbjct: 769 GPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIK--REKPELVLLDIMMPGM 826
Query: 83 DGFKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
G+++ E + D LP++ML+A + + ++G GA DYL KP +EL
Sbjct: 827 SGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQEL 879
>TAIR|locus:2063141 [details] [associations]
symbol:AT2G40260 "AT2G40260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC007020
HOGENOM:HOG000090767 IPI:IPI00530168 PIR:C84827 RefSeq:NP_181555.1
UniGene:At.53083 ProteinModelPortal:Q9SIZ5 SMR:Q9SIZ5 PRIDE:Q9SIZ5
EnsemblPlants:AT2G40260.1 GeneID:818618 KEGG:ath:AT2G40260
TAIR:At2g40260 eggNOG:NOG267620 InParanoid:Q9SIZ5 OMA:FRINSHE
PhylomeDB:Q9SIZ5 ProtClustDB:CLSN2913060 ArrayExpress:Q9SIZ5
Genevestigator:Q9SIZ5 Uniprot:Q9SIZ5
Length = 410
Score = 140 (54.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 190 KKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFR 243
K PR+ WT ELH F+ AV LG D+A PK +L LMNV+GL+ +V SHLQ +R
Sbjct: 81 KTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYR 135
Score = 44 (20.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 465 CQESWQDAVQLSKSSSISLP-----LGEPFILDQVPPNKDNILSSNCYLDISSS 513
C +S QD L S S+ +P LGE + D+V + D+ + L +SSS
Sbjct: 327 CNKSDQD---LDLSLSLKVPRTHDNLGECLLEDEVKEHDDHQDIKSLSLSLSSS 377
>TAIR|locus:2051572 [details] [associations]
symbol:AT2G06020 "AT2G06020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 EMBL:AC006413 IPI:IPI00525998 PIR:C84474
RefSeq:NP_178659.1 UniGene:At.52657 ProteinModelPortal:Q9ZPZ8
SMR:Q9ZPZ8 EnsemblPlants:AT2G06020.1 GeneID:815156
KEGG:ath:AT2G06020 TAIR:At2g06020 eggNOG:NOG275517
HOGENOM:HOG000154034 OMA:SKITPCI PhylomeDB:Q9ZPZ8
ProtClustDB:CLSN2912993 ArrayExpress:Q9ZPZ8 Genevestigator:Q9ZPZ8
Uniprot:Q9ZPZ8
Length = 301
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQKFRL 244
T+ +K R+ W+++LH F+ AV LG +KA PK + + M VEG+ +V SHLQKFRL
Sbjct: 82 TSDEKARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEAMEVEGIALHHVKSHLQKFRL 140
>UNIPROTKB|Q0C4H5 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CP000158
GenomeReviews:CP000158_GR KO:K03413 RefSeq:YP_759368.1
ProteinModelPortal:Q0C4H5 STRING:Q0C4H5 GeneID:4290241
KEGG:hne:HNE_0639 PATRIC:32214082 OMA:WNMPVMN
BioCyc:HNEP228405:GI69-682-MONOMER Uniprot:Q0C4H5
Length = 121
Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 24 MRV-LAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
MR L VDD + K+ + +R+ + VT ALKM RE+ D ++ D MP M
Sbjct: 1 MRTCLVVDDSRVVRKVASRIVRDLGFSVTEAGDGAEALKMCRESMP--DAILLDWNMPTM 58
Query: 83 DGFKLLELVGLEMD--LP-VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
+G L + E +P +V S +D + + + + GA ++++KP + L++ + V
Sbjct: 59 NGIDFLRALRREEGGKVPRIVFCSIENDPEHINEALRSGADEFIMKPFDADILESKFAEV 118
>UNIPROTKB|P0AA16 [details] [associations]
symbol:ompR species:83333 "Escherichia coli K-12"
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA;IDA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0045893 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 EMBL:U18997 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:J01656
PIR:H65135 RefSeq:NP_417864.1 RefSeq:YP_492027.1 PDB:1ODD PDB:1OPC
PDB:2JPB PDBsum:1ODD PDBsum:1OPC PDBsum:2JPB
ProteinModelPortal:P0AA16 SMR:P0AA16 DIP:DIP-31859N IntAct:P0AA16
PaxDb:P0AA16 PRIDE:P0AA16 EnsemblBacteria:EBESCT00000000052
EnsemblBacteria:EBESCT00000000053 EnsemblBacteria:EBESCT00000000054
EnsemblBacteria:EBESCT00000000055 EnsemblBacteria:EBESCT00000017093
GeneID:12932273 GeneID:947913 KEGG:ecj:Y75_p3771 KEGG:eco:b3405
PATRIC:32122246 EchoBASE:EB0666 EcoGene:EG10672 KO:K07659
OMA:REPMSRD ProtClustDB:PRK09468 BioCyc:EcoCyc:OMPR-MONOMER
BioCyc:ECOL316407:JW3368-MONOMER EvolutionaryTrace:P0AA16
Genevestigator:P0AA16 Uniprot:P0AA16
Length = 239
Score = 136 (52.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/120 (28%), Positives = 64/120 (53%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDDD +LE++L E ++V A ++L R +F L++ D+ +P DG
Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL--TRESFHLMVLDLMLPGEDG 63
Query: 85 FKLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
+ + + + +P++M++A + + G+ GA DY+ KP EL + V+RR+
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>UNIPROTKB|Q9KRN2 [details] [associations]
symbol:VC1604 "Transcriptional regulatory protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR024187 Pfam:PF00072
PIRSF:PIRSF006171 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605
GO:GO:0001071 HSSP:Q9A5I4 EMBL:AE004237 PIR:C82180
RefSeq:NP_231244.1 ProteinModelPortal:Q9KRN2 DNASU:2613860
GeneID:2613860 KEGG:vch:VC1604 PATRIC:20082267 KO:K02475
OMA:PERTYFK ProtClustDB:CLSK874447 Uniprot:Q9KRN2
Length = 228
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 32/111 (28%), Positives = 61/111 (54%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
R+L ++DD ++ ++L + + +EV + ++ E N DLV+ DVY+PD
Sbjct: 4 RLLIIEDDAAIAQLHHRYLSQLEGFEVVGIAMSQADARLQMEVLNP-DLVLLDVYLPDGT 62
Query: 84 GFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
G +LL+ + G + V++++A + + + + + G DYLLKPV L+
Sbjct: 63 GLELLQWIRGRNVHCDVILITAAREVETLQQAMRGGVVDYLLKPVMFPRLE 113
>TIGR_CMR|VC_1604 [details] [associations]
symbol:VC_1604 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HSSP:Q9A5I4 EMBL:AE004237 PIR:C82180 RefSeq:NP_231244.1
ProteinModelPortal:Q9KRN2 DNASU:2613860 GeneID:2613860
KEGG:vch:VC1604 PATRIC:20082267 KO:K02475 OMA:PERTYFK
ProtClustDB:CLSK874447 Uniprot:Q9KRN2
Length = 228
Score = 135 (52.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 32/111 (28%), Positives = 61/111 (54%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
R+L ++DD ++ ++L + + +EV + ++ E N DLV+ DVY+PD
Sbjct: 4 RLLIIEDDAAIAQLHHRYLSQLEGFEVVGIAMSQADARLQMEVLNP-DLVLLDVYLPDGT 62
Query: 84 GFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
G +LL+ + G + V++++A + + + + + G DYLLKPV L+
Sbjct: 63 GLELLQWIRGRNVHCDVILITAAREVETLQQAMRGGVVDYLLKPVMFPRLE 113
>SGD|S000001249 [details] [associations]
symbol:SKN7 "Nuclear response regulator and transcription
factor" species:4932 "Saccharomyces cerevisiae" [GO:0043565
"sequence-specific DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IDA;IMP] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IMP] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA;IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IMP;IDA;IPI] [GO:0008361 "regulation of cell
size" evidence=IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000304 "response to singlet oxygen"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=TAS] InterPro:IPR000232 InterPro:IPR001789
InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
SMART:SM00448 SGD:S000001249 GO:GO:0005634 EMBL:BK006934
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0008361 GO:GO:0006970 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000304
GO:GO:0043619 EMBL:U00029 RefSeq:NP_012078.3 GeneID:856615
KEGG:sce:YHR208W KO:K00826 GeneTree:ENSGT00610000087034
RefSeq:NP_012076.3 GeneID:856613 KEGG:sce:YHR206W KO:K15859
OMA:QHGMNDI OrthoDB:EOG4TMV98 EMBL:U00485 EMBL:X83031 EMBL:AY723828
PIR:A49344 ProteinModelPortal:P38889 SMR:P38889 DIP:DIP-2403N
IntAct:P38889 STRING:P38889 PaxDb:P38889 PeptideAtlas:P38889
EnsemblFungi:YHR206W CYGD:YHR206w HOGENOM:HOG000248776
NextBio:982535 Genevestigator:P38889 GermOnline:YHR206W
Uniprot:P38889
Length = 622
Score = 144 (55.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 32/111 (28%), Positives = 60/111 (54%)
Query: 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
G VL V+DD +++ KFLR+ V V + ++A+ L + R +DLV+ D+ MP++
Sbjct: 376 GFHVLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLEKYR--YDLVLMDIVMPNL 433
Query: 83 DGFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
DG +V + + P++ ++ + ++ + HG D L KP ++L
Sbjct: 434 DGATATSIVRSFDNETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDL 484
>TIGR_CMR|CPS_4272 [details] [associations]
symbol:CPS_4272 "sigma-54 dependent response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K07715
RefSeq:YP_270922.1 ProteinModelPortal:Q47WA0 STRING:Q47WA0
GeneID:3519601 KEGG:cps:CPS_4272 PATRIC:21471409 OMA:DASVFIQ
BioCyc:CPSY167879:GI48-4282-MONOMER Uniprot:Q47WA0
Length = 457
Score = 141 (54.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 44/137 (32%), Positives = 68/137 (49%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNF--DLVISDVYMPDM 82
++L VDDD + L++L L Y+V A AL L+ NF +VISD+ M M
Sbjct: 14 KILIVDDDPSLLRLLGIRLSAAGYDVESAANAKIALGRLQ----NFIPQVVISDLRMEGM 69
Query: 83 DGFKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
DG L E + ++ ++PVV+++A+ + G +L KP +EL +T + IR
Sbjct: 70 DGMALFEQIRIQHPNIPVVIMTAHGTIPDAINATKQGVFSFLTKPFESQELLDTVEQAIR 129
Query: 142 RKKVDPKDQNRSPHEFE 158
+ P QN E E
Sbjct: 130 ---LQPS-QNEKTGETE 142
Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 350 ANRNSNLVQGVQTSLEPNQMPQSESTTHI-GDF-----NHINSPTAFTAATGFID 398
+NR + + + + P Q+ +SE HI G F NH A T F+D
Sbjct: 193 SNRKNKVFTAINCAAIPEQLLESELFGHIKGAFTGAERNHQGLFQATNGGTLFLD 247
>TIGR_CMR|GSU_0811 [details] [associations]
symbol:GSU_0811 "nitrogen regulation protein NtrX"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0019740 "nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 KO:K13599 RefSeq:NP_951868.1
ProteinModelPortal:Q74EZ8 GeneID:2685237 KEGG:gsu:GSU0811
PATRIC:22024383 OMA:DIWMPRL BioCyc:GSUL243231:GH27-761-MONOMER
Uniprot:Q74EZ8
Length = 456
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 33/108 (30%), Positives = 59/108 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD+Q L L + Y + AL+ ++++R DLV+ D++MP +DG
Sbjct: 5 ILVVDDEQDIRTALAGILEDEGYRTAFARDGVEALETVQKDRP--DLVLLDIWMPRLDGM 62
Query: 86 KLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
+ L+ L + L VVM+S + + +K GA D++ KP+ +E++
Sbjct: 63 ETLQRLKTADPGLTVVMMSGHGTIETAVKSTKMGAFDFIEKPLSLEKI 110
>TIGR_CMR|CPS_4164 [details] [associations]
symbol:CPS_4164 "response regulator/phosphatase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0016791 "phosphatase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081 eggNOG:COG3437
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:YP_270816.1
ProteinModelPortal:Q47WK6 STRING:Q47WK6 GeneID:3518511
KEGG:cps:CPS_4164 PATRIC:21471189 OMA:CELIYNA
BioCyc:CPSY167879:GI48-4174-MONOMER Uniprot:Q47WK6
Length = 352
Score = 140 (54.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 35/105 (33%), Positives = 58/105 (55%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL VDD+ L +L LR Y+V ALK+ +N D+++ D+ MP MDG+
Sbjct: 16 VLIVDDNSDNLDVLSGVLRPF-YKVKAAINGELALKVASA-KNKPDIILLDIMMPGMDGY 73
Query: 86 KLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127
++ + + L ++PV+ ++A ++TK G GA DY+ KP+
Sbjct: 74 EVCQQLKLNPSTANIPVIFVTAKTETKDEEAGFKLGAVDYITKPI 118
>TIGR_CMR|CPS_0681 [details] [associations]
symbol:CPS_0681 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
Length = 246
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+DD + + ++L E + VT R + ++++N D+V+ DV +P ++G
Sbjct: 4 ILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTT--DIVLLDVMLPGLNGI 61
Query: 86 KLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL-KNTWQHVIR 141
++ L+ +P++ML+A +D + G+ GA DY++KPVR L + +
Sbjct: 62 EVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRALLARINRQLSH 121
Query: 142 RKKVDPKDQN 151
KV+P D N
Sbjct: 122 NDKVEP-DLN 130
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 38/110 (34%), Positives = 56/110 (50%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL V+DD++ + L + L Y A AL + F LVISDV MP MD
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMD 60
Query: 84 GFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
G +LL L+ LPV++++A+ + + GA DYL+KP + L
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKAL 110
>TAIR|locus:2148720 [details] [associations]
symbol:PHL1 "AT5G29000" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AC018632 EMBL:BT002344 EMBL:AY085154 IPI:IPI00527102
IPI:IPI00527253 IPI:IPI00891441 RefSeq:NP_001078629.1
RefSeq:NP_001119299.1 RefSeq:NP_568512.3 RefSeq:NP_851090.1
UniGene:At.26183 ProteinModelPortal:Q8GUN5 SMR:Q8GUN5 PRIDE:Q8GUN5
EnsemblPlants:AT5G29000.2 GeneID:833026 KEGG:ath:AT5G29000
TAIR:At5g29000 eggNOG:NOG275266 InParanoid:Q8GUN5 OMA:DSSSHNP
PhylomeDB:Q8GUN5 ProtClustDB:CLSN2680328 Genevestigator:Q8GUN5
Uniprot:Q8GUN5
Length = 413
Score = 141 (54.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 183 NENSTTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQK 241
+ +S K R+ WT ELH F+ AVN LG ++A PK +L L+N GLT +V SHLQK
Sbjct: 223 SSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQK 282
Query: 242 FR 243
+R
Sbjct: 283 YR 284
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 119 (46.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL VDD +T +L L +E I L++L ++ N D++++D+ MP +DG
Sbjct: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQS--NPDVIVTDINMPRLDG 61
Query: 85 FKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
F +E V +P+++L+ SD + + GA +++KP
Sbjct: 62 FGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 119 (46.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL VDD +T +L L +E I L++L ++ N D++++D+ MP +DG
Sbjct: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQS--NPDVIVTDINMPRLDG 61
Query: 85 FKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
F +E V +P+++L+ SD + + GA +++KP
Sbjct: 62 FGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
>UNIPROTKB|Q9KLN9 [details] [associations]
symbol:VC_A0704 "Phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR025944 PROSITE:PS00688 HSSP:P10958
PIR:E82426 RefSeq:NP_233091.1 ProteinModelPortal:Q9KLN9
DNASU:2612077 GeneID:2612077 KEGG:vch:VCA0704 PATRIC:20085954
KO:K08476 OMA:DIYMPAM ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/127 (25%), Positives = 69/127 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFD-LVISDVYMPDMDG 84
VL +DDDQ +L+ +L I + + + +++ +V+ D+YMP + G
Sbjct: 24 VLLIDDDQD---VLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
Query: 85 FKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW-QHV-IR 141
+LL+ + ++ +PV++++ + D + ++ + GACD+L KP+ +L QH+ +R
Sbjct: 81 MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELR 140
Query: 142 RKKVDPK 148
R ++ K
Sbjct: 141 RSFIEQK 147
>TIGR_CMR|VC_A0704 [details] [associations]
symbol:VC_A0704 "phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00448 GO:GO:0005524 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025944
PROSITE:PS00688 HSSP:P10958 PIR:E82426 RefSeq:NP_233091.1
ProteinModelPortal:Q9KLN9 DNASU:2612077 GeneID:2612077
KEGG:vch:VCA0704 PATRIC:20085954 KO:K08476 OMA:DIYMPAM
ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/127 (25%), Positives = 69/127 (54%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFD-LVISDVYMPDMDG 84
VL +DDDQ +L+ +L I + + + +++ +V+ D+YMP + G
Sbjct: 24 VLLIDDDQD---VLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
Query: 85 FKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW-QHV-IR 141
+LL+ + ++ +PV++++ + D + ++ + GACD+L KP+ +L QH+ +R
Sbjct: 81 MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELR 140
Query: 142 RKKVDPK 148
R ++ K
Sbjct: 141 RSFIEQK 147
>UNIPROTKB|Q9KT18 [details] [associations]
symbol:VC1087 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P13632 OMA:GMQLADD
EMBL:AE004189 PIR:G82244 RefSeq:NP_230732.1
ProteinModelPortal:Q9KT18 DNASU:2614357 GeneID:2614357
KEGG:vch:VC1087 PATRIC:20081270 ProtClustDB:CLSK793948
Uniprot:Q9KT18
Length = 447
Score = 141 (54.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 37/112 (33%), Positives = 59/112 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL +DD+ LK L + LR Y V + AL+ L+EN ++ISD+ MP+MD
Sbjct: 11 LNVLLLDDENDILKALNRVLR-MDYNVVTFDNGADALEYLQENP--IHIIISDMRMPEMD 67
Query: 84 GFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACD-YLLKPVRMEELK 133
G L ++ D ++L+ Y+D + ++ +N G Y+ KP E LK
Sbjct: 68 GADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLK 119
>TIGR_CMR|VC_1087 [details] [associations]
symbol:VC_1087 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P13632 OMA:GMQLADD
EMBL:AE004189 PIR:G82244 RefSeq:NP_230732.1
ProteinModelPortal:Q9KT18 DNASU:2614357 GeneID:2614357
KEGG:vch:VC1087 PATRIC:20081270 ProtClustDB:CLSK793948
Uniprot:Q9KT18
Length = 447
Score = 141 (54.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 37/112 (33%), Positives = 59/112 (52%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL +DD+ LK L + LR Y V + AL+ L+EN ++ISD+ MP+MD
Sbjct: 11 LNVLLLDDENDILKALNRVLR-MDYNVVTFDNGADALEYLQENP--IHIIISDMRMPEMD 67
Query: 84 GFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACD-YLLKPVRMEELK 133
G L ++ D ++L+ Y+D + ++ +N G Y+ KP E LK
Sbjct: 68 GADFLAKAREMQPDTVRLLLTGYADIQSTVRAVNAGGIHTYISKPWDNENLK 119
>UNIPROTKB|P69228 [details] [associations]
symbol:baeR "BaeR-Phosphorylated DNA-binding
transcriptional activator" species:83333 "Escherichia coli K-12"
[GO:0005622 "intracellular" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000160 "phosphorelay
signal transduction system" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IEP;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:2001023 "regulation of response to
drug" evidence=IMP] [GO:2000144 "positive regulation of
DNA-dependent transcription, initiation" evidence=IDA] [GO:0000986
"bacterial-type RNA polymerase core promoter proximal region
sequence-specific DNA binding" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 EMBL:D14054 PIR:JX0283
RefSeq:NP_416583.1 RefSeq:YP_490321.1 ProteinModelPortal:P69228
SMR:P69228 IntAct:P69228 PRIDE:P69228
EnsemblBacteria:EBESCT00000000767 EnsemblBacteria:EBESCT00000014834
GeneID:12931433 GeneID:946605 KEGG:ecj:Y75_p2042 KEGG:eco:b2079
PATRIC:32119491 EchoBASE:EB1575 EcoGene:EG11618 KO:K07664
OMA:EADACRM ProtClustDB:PRK10710 BioCyc:EcoCyc:BAER-MONOMER
BioCyc:ECOL316407:JW2064-MONOMER Genevestigator:P69228
Uniprot:P69228
Length = 240
Score = 133 (51.9 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 34/120 (28%), Positives = 61/120 (50%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L V+D+ ++L +LR Y T+ + L +R+ DL++ D+ +P DG
Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP--DLILLDLMLPGTDG 69
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
L + D+P+VM++A + + G+ GA DY+ KP E+ + ++RR K
Sbjct: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129
Score = 39 (18.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 455 DSSNFLDHGRCQESWQ 470
+S +D GR Q SW+
Sbjct: 140 ESPLIIDEGRFQASWR 155
>TAIR|locus:2038957 [details] [associations]
symbol:AT2G20400 "AT2G20400" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006119
EMBL:AK118313 IPI:IPI00521384 RefSeq:NP_179630.2 UniGene:At.43867
ProteinModelPortal:Q8GXC2 SMR:Q8GXC2 PaxDb:Q8GXC2 PRIDE:Q8GXC2
EnsemblPlants:AT2G20400.1 GeneID:816559 KEGG:ath:AT2G20400
TAIR:At2g20400 eggNOG:NOG265443 HOGENOM:HOG000064669
InParanoid:Q8GXC2 OMA:ANSMENR PhylomeDB:Q8GXC2
ProtClustDB:CLSN2918042 Genevestigator:Q8GXC2 Uniprot:Q8GXC2
Length = 397
Score = 140 (54.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 183 NENSTTQKKPRVVWTTELHTKFIGAVNLLG-LDKAVPKKILDLMNVEGLTRENVASHLQK 241
+ N+ K R+ WT ELH F+ AVN LG ++A PK +L M VEGLT +V SHLQK
Sbjct: 223 SNNAAAAAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQK 282
Query: 242 FR 243
+R
Sbjct: 283 YR 284
>UNIPROTKB|Q9KRK2 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 38/111 (34%), Positives = 61/111 (54%)
Query: 24 MRVLAVDDD-QTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L V+DD Q +IL L + + + I AL R +D+++ D+ +P +
Sbjct: 1 MKILVVEDDVQLGQQILSA-LEQTGWVPELAQDGIDAL--YRATAEEWDVIVLDLGLPKL 57
Query: 83 DGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
DG +L+ + E ++ PVV+LSA ++G+N GA DYL KP M EL
Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVEL 108
>TIGR_CMR|VC_1638 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 38/111 (34%), Positives = 61/111 (54%)
Query: 24 MRVLAVDDD-QTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L V+DD Q +IL L + + + I AL R +D+++ D+ +P +
Sbjct: 1 MKILVVEDDVQLGQQILSA-LEQTGWVPELAQDGIDAL--YRATAEEWDVIVLDLGLPKL 57
Query: 83 DGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
DG +L+ + E ++ PVV+LSA ++G+N GA DYL KP M EL
Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVEL 108
WARNING: HSPs involving 199 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 529 487 0.00081 119 3 11 23 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 449
No. of states in DFA: 613 (65 KB)
Total size of DFA: 275 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.15u 0.17s 39.32t Elapsed: 00:00:02
Total cpu time: 39.18u 0.17s 39.35t Elapsed: 00:00:02
Start: Fri May 10 19:34:40 2013 End: Fri May 10 19:34:42 2013
WARNINGS ISSUED: 2