BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009670
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/63 (73%), Positives = 57/63 (90%)
Query: 187 TTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSL 246
T QKKPRV+WT ELH KF+ AV+ LG+++AVPKKILDLMNV+ LTRENVASHLQKFR++L
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
Query: 247 KRL 249
K++
Sbjct: 61 KKV 63
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 68.6 bits (166), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDDD + ++L LR ++ V AL +RE R DLV+ D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131
+ ++ + +P+VML+A +DT V+ G+ GA DY++KP + +E
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKM-LRENRNNFDLVISDVYMP 80
+ +RVL V+D++ ++ + L++ + V V + M L E FD+VI D+ +P
Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP---FDVVILDIMLP 57
Query: 81 DMDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG+++L+ + ++ PV+ML+A SD + +KG+N GA DYL KP + EL + +
Sbjct: 58 VHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRAL 117
Query: 140 IRRK 143
IRRK
Sbjct: 118 IRRK 121
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNF-DLVISDVYMPDMDG 84
+L VDDD T + LE LR YEV RA + + L++ N D +I DV +P +DG
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEV---RRAASGEEALQQIYKNLPDALICDVLLPGIDG 63
Query: 85 FKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
+ L + V L LP++ L+A D + G GA DYL KP +EL ++++
Sbjct: 64 YTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILA 123
Query: 142 RKKVD 146
R ++
Sbjct: 124 RTTIE 128
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
++L +DD+ T L+ + KFL E EV + + L++ EN N+ D+VI+D+ MP +
Sbjct: 5 KILVIDDESTILQNI-KFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS 63
Query: 84 GFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G +L E+ + + V++L+ + D + + GA +YL KPV ++L + I R
Sbjct: 64 GMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123
Query: 143 KKV 145
KK+
Sbjct: 124 KKL 126
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD++ ILE LR+ YEV + A++M+ E + DL++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
++ V + D+P++ML+A + G+ GA DY+ KP EL + +RR+
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ 120
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD++ ILE LR+ YEV + A++M+ E + DL++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
++ V + D+P++ML+A + G+ GA DY+ KP EL + +RR+
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ 120
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V +DDD+ K +++ L + V+ A AL L + +VISD+ MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAG--IVISDIRMPGMDGL 63
Query: 86 KLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
L +++ L+ DLP+++++ + D + ++ I GA D++ KP + L + + ++++
Sbjct: 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRR 123
Query: 145 V 145
+
Sbjct: 124 L 124
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL VDD+ +++L L+ +EV AL RE R D VI DV P DG
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVXXPGXDG 82
Query: 85 FKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
F +L + + +D P + L+A + + G+ G DY+ KP +EE+ + ++RR
Sbjct: 83 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDM 82
M++L VDD T +I++ LR+ + T + +TAL ML+ + +FD V++D MP M
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 70
Query: 83 DGFKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
G LL+ + + +L PV+M++A + + +++ G Y++KP LK +
Sbjct: 71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 130
Query: 140 IRR 142
R
Sbjct: 131 FER 133
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 39 LEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL-ELVGLEMDL 97
LE+ LR +EV AL+ ENR D ++ D+ MP +DG ++ L ++ D+
Sbjct: 23 LERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDGVSVVTALRAMDNDV 80
Query: 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
PV +LSA S + G+ GA DYL+KP + EL + ++RR+
Sbjct: 81 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V +DDD+ K +++ L + V+ A AL L + +VISD+ MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAG--IVISDIRMPGMDGL 63
Query: 86 KLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
L +++ L+ DLP+++++ + D + ++ I GA D++ KP + L + + +++
Sbjct: 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123
Query: 145 V 145
+
Sbjct: 124 L 124
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+D T + L+ L E Y+ A++ L R DL+ISDV MP+MDG+
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP--DLIISDVLMPEMDGY 67
Query: 86 KLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
L + + DL PV++L+ SD + V++ + GA D++ KP +
Sbjct: 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCK 113
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD + +++LE L YEV+ TAL M R+ D+++ DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 61
Query: 85 FKLLELVGLEMD-----LPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127
F + L+ D +PVV+++A ++G+ GA D+L KP+
Sbjct: 62 FTVCR--KLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 19/158 (12%)
Query: 7 GGSSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAIT---ALKML 63
G+++ DG +G RVL VDD+ E+ + E+ V +R + K
Sbjct: 143 AGAAARLDG------LGGRVLIVDDN-------ERQAQRVAAELGVEHRPVIESDPEKAK 189
Query: 64 RENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGAC 120
DLVI + + DG + + E LPV+ + D ++K + G
Sbjct: 190 ISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVN 249
Query: 121 DYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEFE 158
D L +P+ +EL + I+RK+ +N H E
Sbjct: 250 DILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLE 287
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD + +++LE L YEV+ TAL M R+ D+++ DV MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 60
Query: 85 FKLLELVGLEMD-----LPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127
F + L+ D +PVV+++A ++G+ GA D+L KP+
Sbjct: 61 FTVCR--KLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 19/158 (12%)
Query: 7 GGSSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAIT---ALKML 63
G+++ DG +G RVL VDD+ E+ + E+ V +R + K
Sbjct: 142 AGAAARLDG------LGGRVLIVDDN-------ERQAQRVAAELGVEHRPVIESDPEKAK 188
Query: 64 RENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGAC 120
DLVI + + DG + + E LPV+ + D ++K + G
Sbjct: 189 ISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVN 248
Query: 121 DYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEFE 158
D L +P+ +EL + I+RK+ +N H E
Sbjct: 249 DILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLE 286
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M +L VDD ++L L Y+ N + AL +L ++N+ D+V+SDV MP+MD
Sbjct: 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMD 187
Query: 84 GFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
G++L + + L + LPV+ ++A + + + + G L KPV ++ +K T
Sbjct: 188 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQT 240
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWKMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++AY+ + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M VL ++DD+ +LE++L +V R A K+L E +F++V+ + +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLXLLLPDVN 58
Query: 84 GFKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G ++L+ + + V++++ + K ++ + GA D+L KP +EE++ T I
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 143 KKVDPKDQ 150
+K+ +++
Sbjct: 119 RKLRKENE 126
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL V+D++ +K+ L YE T ++AL + REN+ DL++ D+ +P++ G
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 60
Query: 85 FKLLELVGLEMDL---PVVMLSAYSDTKLVMKG----INHGACD-YLLKPVRMEELKNTW 136
++ + + + DL PVV ++A++ MKG I G C+ Y+ KP+ + T
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVTAFA-----MKGDEERIREGGCEAYISKPISVVHFLETI 115
Query: 137 QHVIRRK 143
+ ++ R+
Sbjct: 116 KRLLERQ 122
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD+ T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWRMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A++ + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 11/125 (8%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA----ITALKMLRENRNNFDLVISDVYM 79
+RVL V+D++ ++ + L++ + V V AL FD+VI D+ +
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALN------EPFDVVILDIXL 56
Query: 80 PDMDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138
P DG+++L+ ++ PV+ L+A SD + +KG+N GA DYL KP + EL +
Sbjct: 57 PVHDGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRA 116
Query: 139 VIRRK 143
+IRRK
Sbjct: 117 LIRRK 121
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++AY+ + ++ GA Y++KP L+ +
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 140 IRR 142
+
Sbjct: 127 FEK 129
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M +L VDD ++L L Y+ N + AL +L ++N+ D+V+SDV MP+MD
Sbjct: 9 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMD 66
Query: 84 GFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136
G++L + + L + LPV+ ++A + + + + G L KPV ++ +K T
Sbjct: 67 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTL 120
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD+++ + +L+ L Y+V + ALK + DL++ DV +P +DG
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKP--DLIVLDVMLPKLDG 62
Query: 85 FKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
++ +L ++ P++ML+A + + G+ GA DY+ KP E+ + ++RR
Sbjct: 63 IEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122
Query: 144 KV 145
++
Sbjct: 123 EI 124
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD+ T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWMMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VDDD + + L LR +EV + A T L+ R ++ ++ D+ MP M G
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHG--CLVLDMRMPGMSGI 64
Query: 86 KLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI---- 140
+L E L + +P+V ++A+ D + ++ + GA ++L KP + L + + +
Sbjct: 65 ELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124
Query: 141 -RRKKVDPKDQ 150
RR+ + +DQ
Sbjct: 125 ERRQARETQDQ 135
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VDDD + +LE+ L T L L D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 86 KLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131
LL+ + LPV++++A+SD + GA DYL KP ++E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VDDD + +LE+ L T L L D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 86 KLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131
LL+ + LPV++++A+SD + GA DYL KP ++E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD+ T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWMMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VDDD + +LE+ L T L L D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 86 KLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131
LL+ + LPV++++A+SD + GA DYL KP ++E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAIT---ALKMLRENRNNFDLVISDVY 78
+ ++V DD++ + +L++++ Q ++ V A L+ML E R D+++ D+
Sbjct: 1 MSIKVCIADDNRELVSLLDEYISS-QPDMEVIGTAYNGQDCLQMLEEKRP--DILLLDII 57
Query: 79 MPDMDGFKLLELV--GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136
MP +DG +LE + G E V+ML+A+ + K + GA ++LKP ME L +
Sbjct: 58 MPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHI 117
Query: 137 QHV 139
+ V
Sbjct: 118 RQV 120
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L ++DD +L L + Y V + A L RE+ + DL++ D+ +PD DG
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGLIKARED--HPDLILLDLGLPDFDG 96
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
+++ + LP+++L+A + ++ + GA DYL+KP +EL
Sbjct: 97 GDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL 144
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD+ T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD+ T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 59
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M +A + + ++ GA Y++KP L+ +
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 140 IRR 142
+
Sbjct: 120 FEK 122
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD+ T +I L+E + V + AL L+ + VISD MP+M
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 59
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
Query: 140 IRR 142
+
Sbjct: 120 FEK 122
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + V+ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWRMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A +D + + GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD++ I++ + + YEV AL+ + D++I D+ +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILDLMLPEIDG 60
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
++ + + +P++MLSA + G+ GA DY+ KP EL+ + ++RR +
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 140 IRR 142
+
Sbjct: 127 FEK 129
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 140 IRR 142
+
Sbjct: 127 FEK 129
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L +DDD+ + L +L + ++V + L++ + DLVI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 86 KLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+L+ + + P+++LS ++ + GA DYL+KP +E+L +H +RR
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKP--LEDLA-VLEHSVRR 120
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 126
Query: 140 IRR 142
+
Sbjct: 127 FEK 129
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
VL V+D+++ L LR+ +E TV AL +R D+V+ D+ +P M G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEF--DRAGADIVLLDLMLPGMSGT 64
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+ + + +PV+M++A + G+ GA DY+ KP EL + V+RR
Sbjct: 65 DVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
DG +LL+ + G LPV+M++A + + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
DG +LL+ + G LPV+M++A + + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L +DDD+ + L +L + ++V + L++ + DLVI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 86 KLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+L+ + + P+++LS ++ + GA DYL+KP +E+L +H +RR
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKP--LEDLA-VLEHSVRR 120
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 64
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 140 IRR 142
+
Sbjct: 125 FEK 127
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAIT---ALKMLRENRNNFDLVISDVY 78
+ ++V DD++ + +L++++ Q ++ V A L+ML E R D+++ +
Sbjct: 1 MSIKVCIADDNRELVSLLDEYISS-QPDMEVIGTAYNGQDCLQMLEEKRP--DILLLXII 57
Query: 79 MPDMDGFKLLELV--GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136
MP +DG +LE + G E V+ML+A+ + K + GA ++LKP ME L +
Sbjct: 58 MPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHI 117
Query: 137 QHV 139
+ V
Sbjct: 118 RQV 120
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL VDD+++ L L E Y A K ++E F +++ DV+MPD DG
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDG 60
Query: 85 FKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138
++ + D V++++ + +K I GA ++L KP +E T +H
Sbjct: 61 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKH 115
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 8 GSSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVT----NRAITALKML 63
G ++D D + + RVL +D+ L + LRE YE+ A+ ++
Sbjct: 3 GPTTDADAAVPR-----RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL- 56
Query: 64 RENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123
+ DLVI DV MP DG + + P+V+L+A+S LV + + GA YL
Sbjct: 57 ----HKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYL 112
Query: 124 LKPVRMEELKNTWQHVIRR 142
+KP + +L + + R
Sbjct: 113 VKPFSISDLIPAIELAVSR 131
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VDDD + +LE+ L T L L D+++S + MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSXIRMPGMDGL 63
Query: 86 KLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131
LL+ + LPV++++A+SD + GA DYL KP ++E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ F +ISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIISDWNMPNM 62
Query: 83 DGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + + LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ F +ISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIISDWNMPNM 63
Query: 83 DGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + + LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M+ A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M+++ + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 29 VDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88
VDD++ K L L + V + A L + RN ++++D+ MPDM G +LL
Sbjct: 9 VDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG--VLVTDLRMPDMSGVELL 66
Query: 89 ELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP----VRMEELKNTWQHVI 140
+G L++++P ++++ + D + ++ + GA D++ KP V +E ++ +H++
Sbjct: 67 RNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA +++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++ + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++ + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L +D D+ + L+ FL E + + A+ + N+ +DL+ ++ + D DG
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDG 63
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+ L + + P+V + ++ + ++ +N G DYL+KP+ +E L + ++RR
Sbjct: 64 WTLCKKIRNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++VL VDD T +L L++ + ++T +K++ +N ++ LVISD MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 83 DGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
DG LL+ V ++L+A D LV K GA + L KP +E++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 21 PIG-MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVY 78
P+G M++L VDD T +I++ L YE V + A + L N + ++I+D
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWN 60
Query: 79 MPDMDGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
MP+M+G L++ V + ++P++M++A V+ + G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEK 120
Query: 136 WQHVI 140
+ V+
Sbjct: 121 LEVVL 125
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++ + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL VDD+++ L L E Y A K ++E F +++ DV+ PD DG
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWXPDGDG 59
Query: 85 FKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR- 142
++ + D V++++ + +K I GA ++L KP +E T +H
Sbjct: 60 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119
Query: 143 -KKVDPKDQ 150
KK P+++
Sbjct: 120 SKKAPPQEE 128
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELVGLEM---DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNF--DLVISDVYM 79
+G ++L V+D+Q +L+ + + + AL++L F DL+I D+ M
Sbjct: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----GGFTPDLMICDIAM 61
Query: 80 PDMDGFKLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
P M+G KLLE + D PV+++SA + + K + G D LLKPV+
Sbjct: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V+ VDD+Q L L++ ++ + + AL+ L+ + LVISD+ MP+M G
Sbjct: 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK--GTSVQLVISDMRMPEMGGE 67
Query: 86 KLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACD-YLLKP 126
LE V D+ V++S Y+D + + +N G +LLKP
Sbjct: 68 VFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKP 110
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD++ I++ + + YEV AL+ + D++I + +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILXLMLPEIDG 60
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144
++ + + +P++MLSA + G+ GA DY+ KP EL+ + ++RR +
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ F +I D MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIICDWNMPNM 62
Query: 83 DGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + + LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VIS MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VIS MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 63
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
Query: 140 IRR 142
+
Sbjct: 124 FEK 126
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT--VTN--RAITALKMLRENRNNFDLVISDV 77
+G RVL VDD +L+ + + YEV TN A+ K L+ D+V D+
Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-----DIVTMDI 55
Query: 78 YMPDMDGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
MP+M+G + E++ ++ + +++ SA +V++ I GA D+++KP +
Sbjct: 56 TMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL V+D + + ++++++ Y++ A++ + R+ L+I D+ +PDM G
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI--ERSKPQLIILDLKLPDMSG 63
Query: 85 FKLLELVGLEMDLP--VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+L+ + + D+P V++ +A+ L + I GA D+L KP+ + LK + ++R
Sbjct: 64 EDVLDWIN-QNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122
Query: 143 KKVD 146
K++
Sbjct: 123 AKLE 126
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 61
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 121
Query: 140 IRR 142
+
Sbjct: 122 FEK 124
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M+ A + + ++ GA +++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VIS MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISAWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
MR+L DD + +L++ L + ++V N A L + E ++D VI D++MP M+
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMN 72
Query: 84 GFKLLELV------GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
G +L+ + G+ PVV+LSA + + GA +L KPV +L +T
Sbjct: 73 GLDMLKQLRVMQASGMRYT-PVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDT 129
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT--VTN--RAITALKMLRENRNNFDLVISDVY 78
G RVL VDD +L+ + + YEV TN A+ K L+ D+V D+
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-----DIVTMDIT 55
Query: 79 MPDMDGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
MP+M+G + E++ ++ + +++ SA +V++ I GA D+++KP +
Sbjct: 56 MPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L V D T +I+ L+E + V + AL L+ + VISD MP+M
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 64
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
Query: 140 IRR 142
+
Sbjct: 125 FEK 127
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 21 PIG-MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVY 78
P+G M++L VDD T +I++ L YE V + A + L N + ++I+D
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWN 60
Query: 79 MPDMDGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
MP+M+G L++ V + ++P++M++ V+ + G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEK 120
Query: 136 WQHVI 140
+ V+
Sbjct: 121 LEVVL 125
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VIS MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M+ A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 29 VDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88
VDD++ K L L + V + A L + RN ++++ + MPDM G +LL
Sbjct: 9 VDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG--VLVTXLRMPDMSGVELL 66
Query: 89 ELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP----VRMEELKNTWQHVI 140
+G L++++P ++++ + D + ++ + GA D++ KP V +E ++ +H++
Sbjct: 67 RNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV-YMPDMDG 84
++ VDD++ L ++ L+ +V + ++ +LRE N ++V+ D+ + ++
Sbjct: 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINN 63
Query: 85 -----FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
F L E+ DLPVV+ +AY+D L ++GI GA D+++KP ++L T
Sbjct: 64 GNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLET 119
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VD + L+ L++ L Y + A AL++L DLVIS ++P MDG
Sbjct: 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGP 74
Query: 86 KLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGAC-DYLLKPVRMEEL 132
LL + + ++L+ D KL+ K IN G YL KP +EL
Sbjct: 75 TLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQEL 123
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VD+ + ++ L + + V A LR R DLV DV+ + +
Sbjct: 7 VXVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR--REKIDLVFVDVFEGE-ESL 63
Query: 86 KLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
L+ + E D V +LSAY D L++ + GA DY+LKP R++ L + +I
Sbjct: 64 NLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 26 VLAVDDDQTCLKILEKFLRECQ-------YEVTVTNRAITALKMLRENRNNFDLVISDVY 78
VL V+D+Q + +FLR +E R +L DL+I D+
Sbjct: 4 VLIVEDEQA----IRRFLRTALEGDGMRVFEAETLQRG-----LLEAATRKPDLIILDLG 54
Query: 79 MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138
+PD DG + + + +PV++LSA S+ + ++ GA DYL KP + EL+ +
Sbjct: 55 LPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRV 114
Query: 139 VIRR 142
+RR
Sbjct: 115 ALRR 118
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + + Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 60
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
++L+ + ++ ++ V++++AY + ++ + GA + KP ++E+++
Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VDD T +I+ L+E + V + AL L+ + VIS MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M+ A + + ++ GA +++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + + Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
++L+ + ++ ++ V++++AY + ++ + GA + KP ++E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
++ V+D+ L+ + + Y V+VT L+ + +N++ DL++ D+ +PD +G
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIXQNQS-VDLILLDINLPDENGL 62
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
L + + +++++ SD + G+ GA DY+ KP+ + EL
Sbjct: 63 XLTRALRERSTVGIILVTGRSDRIDRIVGLEXGADDYVTKPLELREL 109
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + + Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
++L+ + ++ ++ V++++AY + ++ + GA + KP ++E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + + Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 64
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
++L+ + ++ ++ V++++AY + ++ + GA + KP ++E+++
Sbjct: 65 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L V+D+ +++ L + ++ +A+ L E DL++ D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSG 61
Query: 85 FKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
+ ++ + E D+PVVML+A + + ++G+ GA DY+ KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 142 R 142
R
Sbjct: 122 R 122
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 21 PIG-MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVY 78
P+G M++L VDD T +I++ L YE V + A + L N + ++I+
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITAWN 60
Query: 79 MPDMDGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135
MP+M+G L++ V + ++P++M++ V+ + G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEK 120
Query: 136 WQHVI 140
+ V+
Sbjct: 121 LEVVL 125
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L V+D+ +++ L + ++ +A+ L E DL++ D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSG 61
Query: 85 FKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
+ ++ + E D+PVVML+A + + ++G+ GA DY+ KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 142 R 142
R
Sbjct: 122 R 122
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDQTCLKILEKFL-RECQYEVTVTNR-AITALKMLRENRNNFDLVISDVYMPD 81
+RVL+VDD +I+ + + E+ T + A +++ + N D++ DV MP
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK--KFNPDVLTLDVEMPR 61
Query: 82 MDGFKLLELVGLEMDLPVVMLSAYS--DTKLVMKGINHGACDYLLKP 126
MDG LE + +PVVM+S+ + +++ ++ + GA D++ KP
Sbjct: 62 MDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++ VDDD+ LK + + L++ T +T L + F +V+ DV +PD G
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLGRVKTF----LTGEDFLNDEEA-FHVVVLDVXLPDYSG 58
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
+++ + + V++L+ SD + V+KG GA DY+ KP E L
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEIL 107
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDDD + + L LR ++ V AL +RE R + L+ +P +G
Sbjct: 7 RILVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDL--XLPGXNG 64
Query: 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131
+ ++ + +P+V L+A +DT V+ G+ GA DY+ KP + +E
Sbjct: 65 IDVCRVLRADSGVPIVXLTAKTDTVDVVLGLESGADDYIXKPFKPKE 111
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + + Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
++L+ + ++ ++ V++++AY + + + GA + KP ++E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + + Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
++L+ + ++ ++ V++++AY + ++ + GA KP ++E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
M VL ++DD+ +LE++L +V R A K+L E +F++V+ D+ +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVN 58
Query: 84 GFKLLELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
G ++L+ + + V++++ + K ++ + GA D+L KP +EE++ T I
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 143 KKVDPKDQ 150
+K+ +++
Sbjct: 119 RKLRKENE 126
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
RVL V+D+ L+ +++ ++V A A L E+ D+ I D+ +PD DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP--DIAIVDLGLPDEDG 59
Query: 85 FKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
L+ ++ LP+++L+A + ++ ++ GA DY+ KP +EE+ Q + RR
Sbjct: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRR 118
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL VDD KI+ L++ YEV AL+ L E DL++ D+ MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLDIMMPVMDG 61
Query: 85 FKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
F +L+ + + + +PV++L+A + ++ GA + KP + +H++
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + + Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
++ + + ++ ++ V++++AY + ++ + GA + KP ++E+++
Sbjct: 63 IEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 71 DLVISDVYMPDMDGFKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVR- 128
+++++DV MP MDG +L++ ++ L D V+ +S YSD + + I A Y+ KP+
Sbjct: 51 NVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDP 110
Query: 129 ---MEELKNTWQHVIRRK 143
M+ LK + Q V++ +
Sbjct: 111 SEIMDALKQSIQTVLQHQ 128
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L V + T + L+E + V + AL L+ + VISD MP+M
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+M++A + + ++ GA Y++KP L+ +
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L VDD +L + + Y+ + AL ++ + R DLV+ + +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLXMKIPGMDG 62
Query: 85 FKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134
++L+ + ++ ++ V++++AY + ++ + GA + KP ++E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITAL--KMLRENRNNFDLVISDVYMPD 81
++ VDDD+ LK + + L++ R T L + + F +V+ DV +PD
Sbjct: 3 WKIAVVDDDKNILKKVSEKLQQL-------GRVKTFLTGEDFLNDEEAFHVVVLDVXLPD 55
Query: 82 MDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
G+++ + + V++L+ SD + V+KG GA DY+ KP E L + +
Sbjct: 56 YSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFL 115
Query: 141 RRKK 144
R+K
Sbjct: 116 EREK 119
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 71 DLVISDVYMPDMDGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127
DL++ + +P G + ++ + E D+PVVML+A + + ++G+ GA DY+ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 128 RMEELKNTWQHVIRR 142
+EL + V+RR
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL +D+ C + K L +C ++TV + AL+ +NR FD++I D+ MP MD
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAY-QNRQ-FDVIIMDIQMPVMD 68
Query: 84 GFK 86
G +
Sbjct: 69 GLE 71
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD+ ++L++ L+E YE+ ALK N+DLVI D+ MP + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEMPGISG 60
Query: 85 FKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
++ E+ + D +++L+AYS + + + A +Y++K +ELK
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYRSDLS--SWAADEYVVKSFNFDELK 108
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNN-FDLVISDVYMPDMD 83
R+L VDDD L ++ L YEV + A TA + L + N F+L + + +PD +
Sbjct: 5 RILIVDDDTAILDSTKQILEFEGYEVEI---AATAGEGLAKIENEFFNLALFXIKLPDXE 61
Query: 84 GFKLLELV-GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
G +LLE L + ++ Y+ + + +N GA Y+ KPV +L
Sbjct: 62 GTELLEKAHKLRPGXKKIXVTGYASLENSVFSLNAGADAYIXKPVNPRDL 111
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
+VL VDD KI+ L++ YEV AL+ L E DL++ + MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLXIMMPVMDG 61
Query: 85 FKLLELVGLEMD---LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140
F +L+ + + + +PV++L+A + ++ GA + KP + +H++
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
++ L VD T +I+ L+E + V + AL L+ + VISD P+
Sbjct: 5 LKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNXPNX 62
Query: 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139
DG +LL+ + G LPV+ ++A + + ++ GA +++KP L+ +
Sbjct: 63 DGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
Query: 140 IRR 142
+
Sbjct: 123 FEK 125
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83
+ VL VDD +T LR+ +V + A AL L E LV+ D Y P++D
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATL-EQHPAIRLVLVDYYXPEID 183
Query: 84 GFKLLELVGL---EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138
G L+ + + L ++ +S L + + GA D+L +P EEL+ H
Sbjct: 184 GISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSH 241
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLREC--QYEVTVTNRAITALKML-------RENRNNFDL 72
+ + ++ ++DD +++EK +R E+ +AL L R + L
Sbjct: 3 LSVTIVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQL 62
Query: 73 VISDVYMPDMDGFKLLELVGLEMDL---PVVMLSAYSDTKLVMKGINHGACDYLLKPVRM 129
V+ D+ +PD G +L+LV PVV+L+ D + + + + GA Y+ KPV
Sbjct: 63 VLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNY 122
Query: 130 EELKN 134
E N
Sbjct: 123 ENFAN 127
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRN-NFDLVISDVYMPDM 82
+RVL VDD ++++ K + + Q ++ V A L+ + + D++ D+ MP++
Sbjct: 26 IRVLVVDD-SAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNL 84
Query: 83 DGFKLLELVGLEMDLPVVMLSAYSD--TKLVMKGINHGACDYLLKP 126
+G + L+L+ + V+M+S+ ++ + ++ + +GA D++ KP
Sbjct: 85 NGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE----VTVTNRAITALKMLRENRNNFDLVISDVYM 79
+++L V+D+ +++++ L E A +K L N++++ DV M
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 61
Query: 80 PDMDGFKLLELVGLEMDL----PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
P +DG LL + DL P+V L+A++D + + + G +L KP++ +LK
Sbjct: 62 PKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLK 117
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/145 (18%), Positives = 68/145 (46%), Gaps = 31/145 (21%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
++L V+D++ + + + +++ + + + N + A+ + N +++DLV+ DV MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI--NSSSYDLVLMDVCMPVLDG 67
Query: 85 FKLLELV---------------GLEMD--------------LPVVMLSAYSDTKLVMKGI 115
K L+ G+++ LP++ ++A + + +
Sbjct: 68 LKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECY 127
Query: 116 NHGACDYLLKPVRMEELKNTWQHVI 140
+G ++ KPV +++L+ Q +
Sbjct: 128 ANGMDSFISKPVTLQKLRECLQQYL 152
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYE----VTVTNRAITALKMLRENRNNFDLVISDVYM 79
+++L V+D+ +++++ L E A +K L N++++ DV M
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 62
Query: 80 PDMDGFKLLELVGLEMDL----PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
P +DG LL + DL P+V L+A++D + + + G +L KP++ +LK
Sbjct: 63 PKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLK 118
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 27 LAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK 86
L +DD++ L + L Y V + ALK+ + F+ + +++ + G
Sbjct: 11 LVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLS 68
Query: 87 LLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQ 137
L+ L L+ D +++L+ Y+ ++ + GA +YL KP +E + Q
Sbjct: 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQ 120
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITA-LKMLRENRNNFDLVIS--DVYMPD 81
R+L VDDDQ +E+ L+ ++V + + A +K+ + F+ I D+ MP
Sbjct: 8 RILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL-----STFEPAIMTLDLSMPK 62
Query: 82 MDGFKLLELVGLE--MDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
+DG ++ + + P +++ + D + + + GA DYL KP
Sbjct: 63 LDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKP 109
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L V+D+ +++ L + ++ +A+ L E DL++ +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLAWMLPGGSG 61
Query: 85 FKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
+ ++ + E D+PVVML+A + + ++G+ GA D + KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 142 R 142
R
Sbjct: 122 R 122
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 9 SSSDEDGVIDKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNR-AITALKMLRENR 67
SSS G+ I VL VDD +K L + + + T A+ + +
Sbjct: 22 SSSKPRGINYDTGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHY 81
Query: 68 NNFDLVISDVYMPDMDGFKLLE-LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126
N D+V + MP MDG L ++ + + V+M+SA +LV + GA +++KP
Sbjct: 82 PNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKP 141
Query: 127 V 127
+
Sbjct: 142 L 142
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L V+D+ +++ L + ++ +A+ L E DL++ +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLAWMLPGGSG 61
Query: 85 FKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
+ ++ + + D+PVVML+A + + ++G+ GA D + KP +EL + V+R
Sbjct: 62 IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 142 R 142
R
Sbjct: 122 R 122
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L VDD + + L Y L+ L N DLV+ D+ DG+
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEAL--NATPPDLVLLDIXXEPXDGW 63
Query: 86 KLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
+ LE + + D+PV+ L+A T DY+LKP +L +HV+ R
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123
Query: 143 KKVDPKDQ 150
+ D+
Sbjct: 124 RHSIAADE 131
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDD+ ++L++ L+E YE+ ALK N+DLVI D+ P + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEXPGISG 60
Query: 85 FKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
++ E+ + D +++L+AYS + + A +Y++K +ELK
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYR--SDXSSWAADEYVVKSFNFDELK 108
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 71 DLVISDVYMPDMDGFKLLELVGLEMDLP-VVMLSAYSDTKLVMKGINHGACDYLLKPV-- 127
D++I+D+ P + G + L+ + P V+++SA+S+ K +K I G +L KP+
Sbjct: 53 DVIITDIRXPKLGGLEXLDRIKAGGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEP 112
Query: 128 -RMEELKNTWQHV 139
R+ E ++H+
Sbjct: 113 GRLXETLEDFRHI 125
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 35.8 bits (81), Expect = 0.066, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 53 TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL-ELVGLEMDLPVVMLSAYSDTKLV 111
T+ + A+K++ E N ++VI D+ MP M G ++L E+ +++ V++++ +
Sbjct: 35 TDNGLDAMKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYF 92
Query: 112 MKGINHGACDYLLKPVRMEELKNTWQHV 139
K + + Y+LK +EEL T V
Sbjct: 93 EKAVVNDVDAYVLKERSIEELVETINKV 120
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81
+G RVL VDD + +EK+ K L+ D+V D+ MP+
Sbjct: 1 MGKRVLIVDDATNGREAVEKY------------------KELKP-----DIVTMDITMPE 37
Query: 82 MDGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRME 130
M+G + E++ ++ + +++ SA +V++ I GA D+++ +E
Sbjct: 38 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVE 87
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 72 LVISDVYMPDMDGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125
+++ D+ MP +DG L+ L D+P+++LS D + GA DYL+K
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVK 120
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRE----------- 65
D+F G RVL VDD+ K+ L++ EV + AL+++ E
Sbjct: 56 DEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSV 115
Query: 66 NRNNFDLVISDVYMPDMDGFK 86
++ FD + D MP+MDG++
Sbjct: 116 DKLPFDYIFMDCQMPEMDGYE 136
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 72 LVISDVYMPDMDGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125
+++ D+ MP +DG LL D+P+++LS + + GA DYL+K
Sbjct: 66 VILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 72 LVISDVYMPDMDGFKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128
+++ D+ +P DG ++L+ + + +PVV+++ S+ K + ++ Y++KP+
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 129 MEELKNTWQHVIR 141
++ L T Q I+
Sbjct: 125 IDRLTETVQTFIK 137
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+D+ L+ Y+V ++L E + +LVI D+ +P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGL 63
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
L + + ++ ++ L+ + + G+ GA DY+ KP EL ++++ R
Sbjct: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
+L V+D+ L+ Y+V ++L E + +LVI D+ +P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEY--DINLVIXDINLPGKNGL 63
Query: 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142
L + + ++ + L+ + + G+ GA DY+ KP EL ++++ R
Sbjct: 64 LLARELREQANVALXFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 25 RVLAVDDDQTCLKILEKFLREC--QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
RV VDDD +L+ + E RA L + N D++I D+ MPDM
Sbjct: 5 RVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-----NKQDIIILDLMMPDM 59
Query: 83 DGFKLL 88
DG +++
Sbjct: 60 DGIEVI 65
>pdb|3KCN|A Chain A, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
pdb|3KCN|B Chain B, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
Length = 151
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDG 84
R+L VDDD + L L++ L +EVT AL ++++ + F ++ D P +G
Sbjct: 6 RILLVDDDYSLLNTLKRNL-SFDFEVTTCESGPEALACIKKS-DPFSVIXVDXRXPGXEG 63
Query: 85 FKLLELVGLEMDLPVVM-LSAYSDTKLVMKGINHGAC-DYLLKPVRMEELK 133
++++ L V + L+ D + +N G +L KP + ++K
Sbjct: 64 TEVIQKARLISPNSVYLXLTGNQDLTTAXEAVNEGQVFRFLNKPCQXSDIK 114
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 71 DLVISDVYMPDMDGFKLL-ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRM 129
D+V D+ MP+M+G + E++ ++ + +++ SA +V++ I GA +++ +
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIVNTAAV 86
Query: 130 E 130
E
Sbjct: 87 E 87
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF 85
V VDDD ++ L + + + + + +L++ + +V+ D+ P DG+
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSG--VVLLDIXXPGXDGW 67
Query: 86 KLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
+ + LE + +V L+A + G+ DY+ KP E+L
Sbjct: 68 DTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDL 117
>pdb|2LPM|A Chain A, Chemical Shift And Structure Assignments For Sma0114
Length = 123
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT-NRAITALKMLRENRNNFDLVISDVYMPDM 82
+RVL V+D+ ++E L E +EV T +R AL + R + FD+ I DV +
Sbjct: 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR--KGQFDIAIIDVNLDGE 66
Query: 83 DGFKLLELVGLEMDLPVVMLSAY 105
+ + +++ E ++P + + Y
Sbjct: 67 PSYPVADILA-ERNVPFIFATGY 88
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 25 RVLAVDDDQTCLKILEKFL--RECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM 82
RVL V+D+ + ++ + L ++ ++ + AL +++ + +DL+I D+ +P
Sbjct: 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIA 64
Query: 83 DGFKLLELV---GLEMDLPVVMLS 103
+GF++ V G P+V+L+
Sbjct: 65 NGFEVXSAVRKPGANQHTPIVILT 88
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 69 NFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSA 104
N DL++ D+ MP MDG + L L+ + MLS+
Sbjct: 60 NVDLILLDIEMPVMDGMEFLRHAKLKTRAKICMLSS 95
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--- 81
R++ VD L L + +++ AI A+ + + + L+I++ MP
Sbjct: 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPH--LIITEANMPKISG 67
Query: 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141
MD F L+ +PV+ LS + K + ++ G D++ KPV L + V++
Sbjct: 68 MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNF--DLVISDVYMPD- 81
++L V+D + K + L + Y V + A+T + + + DL++ D+ + +
Sbjct: 7 KILIVEDSKFQAKTIANILNKYGYTVEI---ALTGEAAVEKVSGGWYPDLILMDIELGEG 63
Query: 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125
MDG + + +LPVV L+A+++ +V K + A Y++K
Sbjct: 64 MDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMK 107
>pdb|3CG0|A Chain A, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|B Chain B, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|C Chain C, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|D Chain D, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
Length = 140
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 26 VLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYM-PDMD 83
VL V+D + L L Y+V V + A++ + R D+ + D+ + +D
Sbjct: 12 VLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRP--DIALVDIMLCGALD 69
Query: 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143
G + + +LP++ +++ D + + YL KPV + L + + I +K
Sbjct: 70 GVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129
Query: 144 KVD 146
K++
Sbjct: 130 KLE 132
>pdb|3N0R|A Chain A, Structure Of The Phyr Stress Response Regulator At 1.25
Angstrom Resolution
Length = 286
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP 80
+ VL ++D+ +E +RE ++VT + AL+ + R LV++D+ +
Sbjct: 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAV--TRRTPGLVLADIQLA 216
Query: 81 D----MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELK 133
D +D K +++G D+PV+ ++A+ + ++ G + KP + E +K
Sbjct: 217 DGSSGIDAVK--DILG-RXDVPVIFITAFPER--LLTGERPEPTFLITKPFQPETVK 268
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM----- 79
++L +D L+ FL + +Y V + AL+ + + ++ DLVI D +
Sbjct: 5 KILIIDQQDFSRIELKNFL-DSEYLVIESKNEKEALEQI--DHHHPDLVILDXDIIGENS 61
Query: 80 PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEEL 132
P++ KL GL+ ++P+++L + + ++ G++ GA DYL KP +L
Sbjct: 62 PNL-CLKLKRSKGLK-NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|2QSJ|A Chain A, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
pdb|2QSJ|B Chain B, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
Length = 154
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAIT---ALKMLRENRNNFDLVISDVY 78
+ + V+ + DD ++ K L E + A T AL L E N DL++ DV
Sbjct: 1 MSLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFL-EADNTVDLILLDVN 59
Query: 79 MPDMDGFK-LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125
+PD + L+ L + V ++S +D +L+ + GA ++ K
Sbjct: 60 LPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPK 107
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 20 FPIGMRVLAVDDDQT---CLKILEKFLRECQYEV-----TVTNRAITALKMLRENRN-NF 70
P+ ++ VDDD+ C++ E F+R C EV T+ N LK L + N N+
Sbjct: 257 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIIN---ICLKYLTYDPNYNY 313
Query: 71 D 71
D
Sbjct: 314 D 314
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 20 FPIGMRVLAVDDDQT---CLKILEKFLRECQYEV-----TVTNRAITALKMLRENRN-NF 70
P+ ++ VDDD+ C++ E F+R C EV T+ N LK L + N N+
Sbjct: 280 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIIN---ICLKYLTYDPNYNY 336
Query: 71 D 71
D
Sbjct: 337 D 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,598,277
Number of Sequences: 62578
Number of extensions: 494658
Number of successful extensions: 1316
Number of sequences better than 100.0: 161
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 164
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)