Query 009670
Match_columns 529
No_of_seqs 384 out of 2125
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 15:55:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3437 Response regulator con 100.0 3.8E-33 8.1E-38 285.8 8.0 242 22-289 13-284 (360)
2 COG4565 CitB Response regulato 99.9 1.1E-23 2.3E-28 203.1 18.2 190 24-251 1-202 (224)
3 COG0745 OmpR Response regulato 99.9 1E-20 2.2E-25 187.5 16.6 118 24-144 1-120 (229)
4 COG4753 Response regulator con 99.8 1.7E-20 3.7E-25 201.0 14.0 118 23-142 1-122 (475)
5 COG2197 CitB Response regulato 99.8 1E-18 2.2E-23 171.1 17.1 204 24-277 1-207 (211)
6 COG2204 AtoC Response regulato 99.8 1.3E-18 2.9E-23 186.6 16.2 119 24-144 5-124 (464)
7 PRK10046 dpiA two-component re 99.8 1.9E-17 4.2E-22 161.9 21.6 122 21-144 2-126 (225)
8 PF00072 Response_reg: Respons 99.8 2E-17 4.4E-22 142.0 15.6 110 26-137 1-112 (112)
9 COG4566 TtrR Response regulato 99.7 1.2E-17 2.5E-22 158.8 13.5 120 22-143 3-123 (202)
10 COG0784 CheY FOG: CheY-like re 99.7 1.3E-15 2.9E-20 133.9 16.5 120 22-142 4-126 (130)
11 PRK10840 transcriptional regul 99.7 3.5E-15 7.5E-20 144.4 19.5 203 23-279 3-211 (216)
12 PRK10430 DNA-binding transcrip 99.7 9.3E-15 2E-19 144.1 21.0 119 24-142 2-123 (239)
13 PRK09483 response regulator; P 99.7 4.8E-15 1E-19 141.1 18.2 120 23-144 1-123 (217)
14 PRK10529 DNA-binding transcrip 99.7 3.8E-15 8.3E-20 142.8 17.5 118 24-143 2-119 (225)
15 PLN03029 type-a response regul 99.7 2.6E-15 5.6E-20 147.8 16.5 121 23-143 8-149 (222)
16 PRK09958 DNA-binding transcrip 99.6 9.8E-15 2.1E-19 137.6 19.2 118 24-143 1-120 (204)
17 PRK11173 two-component respons 99.6 5.3E-15 1.1E-19 143.9 17.3 118 24-143 4-121 (237)
18 PRK10816 DNA-binding transcrip 99.6 5.8E-15 1.3E-19 141.6 17.2 118 24-143 1-119 (223)
19 COG3947 Response regulator con 99.6 4.6E-15 9.9E-20 149.1 15.6 115 24-142 1-116 (361)
20 PRK10766 DNA-binding transcrip 99.6 8.7E-15 1.9E-19 139.9 17.1 118 24-143 3-120 (221)
21 PRK09836 DNA-binding transcrip 99.6 1.1E-14 2.3E-19 140.1 17.3 117 24-142 1-118 (227)
22 PRK10643 DNA-binding transcrip 99.6 1.2E-14 2.6E-19 138.1 17.3 118 24-143 1-119 (222)
23 COG3706 PleD Response regulato 99.6 5.4E-15 1.2E-19 157.9 16.1 122 22-145 131-255 (435)
24 PRK11517 transcriptional regul 99.6 2.1E-14 4.5E-19 137.0 17.2 117 24-142 1-117 (223)
25 PRK10336 DNA-binding transcrip 99.6 2.1E-14 4.6E-19 136.3 17.0 118 24-143 1-119 (219)
26 PRK10701 DNA-binding transcrip 99.6 2.2E-14 4.7E-19 139.6 17.3 118 24-143 2-119 (240)
27 TIGR02154 PhoB phosphate regul 99.6 2.3E-14 5.1E-19 136.2 17.0 118 24-143 3-123 (226)
28 CHL00148 orf27 Ycf27; Reviewed 99.6 2.6E-14 5.6E-19 137.9 17.5 119 23-143 6-124 (240)
29 PRK10955 DNA-binding transcrip 99.6 2.2E-14 4.9E-19 137.6 16.9 118 24-144 2-119 (232)
30 PRK10161 transcriptional regul 99.6 2.4E-14 5.3E-19 137.8 17.1 117 24-142 3-122 (229)
31 PRK13856 two-component respons 99.6 2.8E-14 6.1E-19 139.5 17.1 117 25-143 3-120 (241)
32 COG4567 Response regulator con 99.6 1.1E-14 2.4E-19 133.9 12.7 112 25-138 11-123 (182)
33 PRK11083 DNA-binding response 99.6 4.4E-14 9.6E-19 134.7 16.7 118 24-143 4-122 (228)
34 PRK09468 ompR osmolarity respo 99.6 4.9E-14 1.1E-18 136.8 17.2 119 23-143 5-124 (239)
35 PRK09935 transcriptional regul 99.6 1.6E-13 3.6E-18 129.1 20.2 119 23-143 3-124 (210)
36 TIGR03787 marine_sort_RR prote 99.6 5.6E-14 1.2E-18 134.9 17.3 117 25-143 2-121 (227)
37 PRK15347 two component system 99.6 3.9E-14 8.4E-19 163.8 17.1 120 21-142 688-812 (921)
38 PRK11107 hybrid sensory histid 99.6 5.5E-14 1.2E-18 162.3 17.1 119 22-142 666-787 (919)
39 PRK10841 hybrid sensory kinase 99.6 6.6E-14 1.4E-18 163.6 17.6 120 22-143 800-920 (924)
40 KOG0519 Sensory transduction h 99.5 3.7E-14 8E-19 162.8 14.6 122 18-140 661-784 (786)
41 TIGR01387 cztR_silR_copR heavy 99.5 2.2E-13 4.7E-18 129.0 16.8 116 26-143 1-117 (218)
42 PRK11697 putative two-componen 99.5 2.4E-13 5.3E-18 132.5 16.0 115 24-142 2-118 (238)
43 PRK11466 hybrid sensory histid 99.5 1.3E-13 2.7E-18 159.9 16.5 120 23-143 681-801 (914)
44 PRK09581 pleD response regulat 99.5 5.9E-14 1.3E-18 148.1 12.5 117 23-142 155-274 (457)
45 PRK14084 two-component respons 99.5 3.1E-13 6.7E-18 132.8 16.4 116 24-143 1-119 (246)
46 PRK10360 DNA-binding transcrip 99.5 3.4E-13 7.3E-18 126.4 15.9 116 24-143 2-119 (196)
47 PRK11475 DNA-binding transcrip 99.5 2E-13 4.2E-18 133.6 14.9 189 36-283 3-200 (207)
48 TIGR02875 spore_0_A sporulatio 99.5 3.3E-13 7.2E-18 134.3 16.3 118 23-142 2-124 (262)
49 PRK10365 transcriptional regul 99.5 2.6E-13 5.6E-18 145.1 15.4 119 22-142 4-123 (441)
50 PRK10710 DNA-binding transcrip 99.5 9.2E-13 2E-17 127.1 17.6 118 24-143 11-128 (240)
51 PRK15115 response regulator Gl 99.5 3.7E-13 7.9E-18 144.5 15.9 118 23-142 5-123 (444)
52 PRK11361 acetoacetate metaboli 99.5 5.4E-13 1.2E-17 143.4 16.8 119 22-142 3-122 (457)
53 PRK10923 glnG nitrogen regulat 99.5 6.2E-13 1.3E-17 143.8 17.0 117 24-142 4-121 (469)
54 PRK15479 transcriptional regul 99.5 1.4E-12 3.1E-17 123.7 17.2 118 24-143 1-119 (221)
55 TIGR02956 TMAO_torS TMAO reduc 99.5 4.9E-13 1.1E-17 155.7 16.2 118 23-142 702-823 (968)
56 PRK12555 chemotaxis-specific m 99.5 8.3E-13 1.8E-17 137.4 15.6 116 24-141 1-129 (337)
57 PRK10100 DNA-binding transcrip 99.5 8.9E-13 1.9E-17 129.8 14.7 117 23-146 10-131 (216)
58 PRK09959 hybrid sensory histid 99.5 7.3E-13 1.6E-17 158.0 17.0 120 21-142 956-1076(1197)
59 TIGR02915 PEP_resp_reg putativ 99.5 8.5E-13 1.8E-17 141.7 15.8 113 26-142 1-119 (445)
60 PRK15411 rcsA colanic acid cap 99.5 1.9E-12 4.1E-17 126.4 16.6 118 24-144 1-125 (207)
61 PRK11091 aerobic respiration c 99.5 7.4E-13 1.6E-17 151.4 16.0 117 23-142 525-645 (779)
62 PRK15369 two component system 99.5 9.5E-12 2.1E-16 115.7 20.0 119 23-143 3-124 (211)
63 PRK10403 transcriptional regul 99.4 8.1E-12 1.8E-16 117.3 19.4 119 23-143 6-127 (215)
64 PRK13435 response regulator; P 99.4 2.5E-12 5.5E-17 116.1 15.1 117 23-144 5-123 (145)
65 PRK09390 fixJ response regulat 99.4 2.4E-12 5.1E-17 119.2 14.9 119 22-142 2-121 (202)
66 TIGR01818 ntrC nitrogen regula 99.4 1.6E-12 3.6E-17 140.1 15.8 115 26-142 1-116 (463)
67 PRK10610 chemotaxis regulatory 99.4 1.2E-11 2.6E-16 104.4 16.9 118 23-142 5-126 (129)
68 PRK10651 transcriptional regul 99.4 8.8E-12 1.9E-16 117.4 17.4 118 24-143 7-127 (216)
69 PRK09581 pleD response regulat 99.4 6.1E-12 1.3E-16 132.8 17.3 117 24-142 3-122 (457)
70 PRK13558 bacterio-opsin activa 99.4 4E-12 8.6E-17 142.9 15.1 119 22-142 6-127 (665)
71 PRK00742 chemotaxis-specific m 99.4 9.3E-12 2E-16 130.3 16.3 104 23-128 3-110 (354)
72 COG2201 CheB Chemotaxis respon 99.4 6.2E-12 1.3E-16 131.1 13.0 104 23-128 1-108 (350)
73 COG3707 AmiR Response regulato 99.3 2.8E-11 6E-16 116.0 11.9 120 23-144 5-125 (194)
74 PRK09191 two-component respons 99.3 1E-10 2.2E-15 115.6 15.7 116 23-142 137-254 (261)
75 PRK13837 two-component VirA-li 99.2 1.4E-10 3.1E-15 134.2 17.6 118 23-143 697-815 (828)
76 PLN03162 golden-2 like transcr 99.2 8.9E-12 1.9E-16 127.7 6.5 65 187-251 231-295 (526)
77 cd00156 REC Signal receiver do 99.2 4.8E-10 1E-14 90.0 12.9 111 27-139 1-112 (113)
78 PRK13557 histidine kinase; Pro 99.1 6E-10 1.3E-14 120.3 15.7 119 23-142 415-535 (540)
79 PRK10693 response regulator of 99.1 7.1E-10 1.5E-14 114.2 12.4 89 52-142 2-92 (303)
80 PRK15029 arginine decarboxylas 99.0 1.4E-09 3E-14 124.1 13.6 118 24-143 1-134 (755)
81 COG3279 LytT Response regulato 99.0 1.6E-09 3.4E-14 108.7 11.3 116 23-142 1-119 (244)
82 TIGR01557 myb_SHAQKYF myb-like 98.8 1.3E-08 2.8E-13 80.1 6.2 54 191-244 1-55 (57)
83 COG2206 c-di-GMP phosphodieste 98.7 1.5E-08 3.2E-13 106.5 4.8 79 193-289 151-247 (344)
84 PRK11107 hybrid sensory histid 98.2 1.6E-05 3.5E-10 92.3 14.4 114 21-140 534-650 (919)
85 COG3706 PleD Response regulato 98.0 4.6E-06 1E-10 89.9 5.3 93 48-143 13-105 (435)
86 smart00448 REC cheY-homologous 97.5 0.00089 1.9E-08 46.2 8.1 55 24-80 1-55 (55)
87 PF13487 HD_5: HD domain; PDB: 97.4 7.3E-05 1.6E-09 59.8 2.3 48 228-289 1-48 (64)
88 PF06490 FleQ: Flagellar regul 97.3 0.0018 4E-08 57.3 10.1 105 25-139 1-107 (109)
89 PF03709 OKR_DC_1_N: Orn/Lys/A 96.4 0.028 6.1E-07 50.1 9.6 106 36-143 6-115 (115)
90 cd02071 MM_CoA_mut_B12_BD meth 96.3 0.094 2E-06 47.0 12.8 111 25-137 1-121 (122)
91 PRK02261 methylaspartate mutas 96.0 0.23 5E-06 45.8 13.9 115 23-140 3-134 (137)
92 TIGR00640 acid_CoA_mut_C methy 95.5 0.59 1.3E-05 42.9 14.3 116 24-141 3-128 (132)
93 cd02067 B12-binding B12 bindin 95.4 0.18 3.8E-06 44.6 10.6 93 30-124 10-108 (119)
94 PRK10618 phosphotransfer inter 95.3 0.029 6.2E-07 66.5 6.4 52 20-79 686-737 (894)
95 PRK15399 lysine decarboxylase 94.0 0.57 1.2E-05 54.2 12.7 115 24-142 1-123 (713)
96 PRK15400 lysine decarboxylase 93.6 0.64 1.4E-05 53.8 12.0 79 24-106 1-86 (714)
97 TIGR03815 CpaE_hom_Actino heli 92.6 0.47 1E-05 49.3 8.4 84 47-139 1-85 (322)
98 PF02310 B12-binding: B12 bind 92.5 2.9 6.2E-05 36.5 12.1 92 31-125 12-111 (121)
99 TIGR01501 MthylAspMutase methy 92.0 4.1 8.9E-05 37.7 12.9 108 32-141 14-133 (134)
100 cd04728 ThiG Thiazole synthase 92.0 1.6 3.5E-05 44.2 11.0 111 24-142 94-226 (248)
101 PRK00208 thiG thiazole synthas 91.7 1.6 3.5E-05 44.3 10.6 111 24-142 94-226 (250)
102 COG4999 Uncharacterized domain 90.8 1.2 2.6E-05 40.5 7.7 113 18-136 6-121 (140)
103 PRK01130 N-acetylmannosamine-6 90.5 5.1 0.00011 39.3 12.8 84 39-125 110-202 (221)
104 PF10087 DUF2325: Uncharacteri 87.9 3.9 8.4E-05 35.1 8.7 81 25-105 1-84 (97)
105 PRK00043 thiE thiamine-phospha 87.1 8.9 0.00019 36.8 11.7 69 52-124 110-187 (212)
106 cd02072 Glm_B12_BD B12 binding 86.8 14 0.0003 34.0 12.0 103 32-137 12-127 (128)
107 cd02070 corrinoid_protein_B12- 86.2 9.1 0.0002 37.2 11.3 98 23-125 82-191 (201)
108 cd02069 methionine_synthase_B1 86.2 7.4 0.00016 38.5 10.7 103 23-127 88-203 (213)
109 COG2185 Sbm Methylmalonyl-CoA 85.6 22 0.00047 33.3 12.8 115 23-141 12-138 (143)
110 PF01408 GFO_IDH_MocA: Oxidore 85.2 13 0.00027 32.2 10.7 105 24-142 1-112 (120)
111 CHL00162 thiG thiamin biosynth 84.4 22 0.00049 36.4 13.2 98 42-143 132-241 (267)
112 PRK15320 transcriptional activ 82.2 20 0.00043 35.7 11.3 98 25-125 3-102 (251)
113 cd04729 NanE N-acetylmannosami 81.8 19 0.00042 35.2 11.6 75 48-125 124-206 (219)
114 PRK09426 methylmalonyl-CoA mut 81.8 16 0.00035 42.7 12.6 116 24-141 583-708 (714)
115 TIGR02370 pyl_corrinoid methyl 76.6 18 0.00039 35.2 9.4 96 24-124 85-192 (197)
116 PF01596 Methyltransf_3: O-met 76.0 14 0.00031 36.3 8.6 59 20-78 67-130 (205)
117 PRK10558 alpha-dehydro-beta-de 75.5 28 0.00061 35.5 10.8 100 38-139 9-113 (256)
118 cd02068 radical_SAM_B12_BD B12 75.1 40 0.00088 29.9 10.6 105 34-140 3-111 (127)
119 PF03602 Cons_hypoth95: Conser 75.0 11 0.00024 36.3 7.4 67 24-92 66-138 (183)
120 TIGR03151 enACPred_II putative 75.0 26 0.00057 36.6 10.7 84 39-125 101-190 (307)
121 TIGR03239 GarL 2-dehydro-3-deo 74.3 35 0.00075 34.6 11.1 83 55-139 21-106 (249)
122 cd00564 TMP_TenI Thiamine mono 73.0 26 0.00056 32.8 9.3 69 53-125 102-178 (196)
123 cd04730 NPD_like 2-Nitropropan 72.3 53 0.0012 32.1 11.7 81 42-125 97-185 (236)
124 cd04727 pdxS PdxS is a subunit 71.8 26 0.00056 36.4 9.4 89 52-143 118-248 (283)
125 TIGR01761 thiaz-red thiazoliny 71.4 46 0.001 35.4 11.7 104 22-141 2-113 (343)
126 PRK10128 2-keto-3-deoxy-L-rham 70.8 46 0.001 34.2 11.1 99 39-139 9-112 (267)
127 PRK00278 trpC indole-3-glycero 70.3 1E+02 0.0022 31.4 13.5 95 27-125 139-240 (260)
128 TIGR00007 phosphoribosylformim 70.1 56 0.0012 32.0 11.3 67 56-124 147-217 (230)
129 PRK11840 bifunctional sulfur c 70.0 42 0.0009 35.6 10.7 115 24-142 168-300 (326)
130 PRK12704 phosphodiesterase; Pr 69.8 5.5 0.00012 44.7 4.5 153 98-283 251-409 (520)
131 cd04724 Tryptophan_synthase_al 69.7 19 0.00042 36.1 8.0 58 84-141 64-127 (242)
132 TIGR01334 modD putative molybd 69.6 20 0.00043 37.1 8.2 94 26-123 159-261 (277)
133 PRK05749 3-deoxy-D-manno-octul 69.6 48 0.001 35.4 11.5 111 23-141 262-387 (425)
134 COG0512 PabA Anthranilate/para 69.1 7.9 0.00017 37.9 4.8 77 23-103 1-81 (191)
135 TIGR03088 stp2 sugar transfera 69.0 39 0.00085 34.9 10.5 107 23-141 229-337 (374)
136 PRK07896 nicotinate-nucleotide 68.2 24 0.00053 36.7 8.5 94 26-123 173-272 (289)
137 TIGR00343 pyridoxal 5'-phospha 67.7 34 0.00074 35.6 9.3 61 83-143 184-251 (287)
138 TIGR02311 HpaI 2,4-dihydroxyhe 67.6 59 0.0013 32.9 11.0 84 54-139 20-106 (249)
139 PRK03958 tRNA 2'-O-methylase; 67.5 62 0.0013 31.4 10.5 77 24-104 32-111 (176)
140 PRK10669 putative cation:proto 67.4 46 0.00099 37.4 11.2 30 92-123 504-533 (558)
141 TIGR02026 BchE magnesium-proto 66.6 66 0.0014 35.8 12.2 107 32-141 21-137 (497)
142 PF02254 TrkA_N: TrkA-N domain 66.3 35 0.00077 29.3 8.1 93 23-124 21-115 (116)
143 PRK05703 flhF flagellar biosyn 66.1 53 0.0011 36.0 11.0 91 23-114 251-350 (424)
144 PLN02871 UDP-sulfoquinovose:DA 65.9 68 0.0015 34.9 11.9 107 23-141 290-399 (465)
145 cd00331 IGPS Indole-3-glycerol 65.9 1.2E+02 0.0025 29.6 12.5 78 44-124 118-200 (217)
146 PF05690 ThiG: Thiazole biosyn 65.7 45 0.00097 33.9 9.4 115 24-142 94-226 (247)
147 PLN02591 tryptophan synthase 64.8 23 0.0005 36.0 7.4 59 83-141 65-129 (250)
148 cd02065 B12-binding_like B12 b 64.2 46 0.001 28.8 8.5 72 30-103 10-87 (125)
149 TIGR00693 thiE thiamine-phosph 63.6 48 0.001 31.6 9.1 69 52-124 102-179 (196)
150 TIGR00262 trpA tryptophan synt 63.0 27 0.00059 35.5 7.6 59 83-141 73-138 (256)
151 PTZ00314 inosine-5'-monophosph 62.6 63 0.0014 36.1 11.0 32 94-125 342-373 (495)
152 PRK15484 lipopolysaccharide 1, 62.5 1.6E+02 0.0034 31.2 13.6 109 23-141 224-343 (380)
153 PRK13111 trpA tryptophan synth 62.3 27 0.00059 35.7 7.4 58 84-141 76-140 (258)
154 cd03813 GT1_like_3 This family 62.1 70 0.0015 35.0 11.2 107 23-141 324-441 (475)
155 cd04726 KGPDC_HPS 3-Keto-L-gul 62.0 1.3E+02 0.0027 28.7 11.8 99 23-125 77-186 (202)
156 TIGR00262 trpA tryptophan synt 61.4 1.7E+02 0.0036 29.8 13.0 101 23-126 115-228 (256)
157 PLN02274 inosine-5'-monophosph 60.8 1.1E+02 0.0024 34.4 12.5 100 23-125 260-380 (505)
158 cd03823 GT1_ExpE7_like This fa 60.5 1.4E+02 0.003 29.5 12.2 66 70-141 263-328 (359)
159 PF14097 SpoVAE: Stage V sporu 60.3 93 0.002 30.1 10.0 74 26-99 3-85 (180)
160 PRK09922 UDP-D-galactose:(gluc 60.2 1E+02 0.0022 32.0 11.6 111 23-143 210-325 (359)
161 COG2022 ThiG Uncharacterized e 59.9 46 0.001 33.8 8.3 114 24-141 101-232 (262)
162 PRK05458 guanosine 5'-monophos 59.8 1.4E+02 0.0031 31.7 12.4 98 25-125 113-230 (326)
163 cd04962 GT1_like_5 This family 59.6 83 0.0018 32.0 10.6 106 24-141 228-335 (371)
164 PRK05567 inosine 5'-monophosph 59.0 83 0.0018 35.0 11.1 99 23-125 240-360 (486)
165 CHL00200 trpA tryptophan synth 58.9 33 0.00071 35.2 7.4 59 83-141 78-142 (263)
166 cd04722 TIM_phosphate_binding 58.9 89 0.0019 28.5 9.8 56 69-124 136-198 (200)
167 PRK07695 transcriptional regul 58.5 94 0.002 29.9 10.2 67 52-122 101-174 (201)
168 cd06533 Glyco_transf_WecG_TagA 58.3 59 0.0013 30.8 8.6 78 23-104 46-132 (171)
169 TIGR00095 RNA methyltransferas 57.9 1.2E+02 0.0025 29.3 10.7 68 25-92 74-144 (189)
170 cd01424 MGS_CPS_II Methylglyox 57.9 85 0.0018 27.2 8.9 25 30-54 9-33 (110)
171 PLN02591 tryptophan synthase 57.3 1.9E+02 0.0042 29.4 12.5 101 26-126 110-219 (250)
172 TIGR01037 pyrD_sub1_fam dihydr 57.3 1.7E+02 0.0037 30.0 12.4 58 86-143 224-287 (300)
173 PRK06843 inosine 5-monophospha 57.2 1.2E+02 0.0027 33.1 11.7 101 22-125 164-285 (404)
174 PRK00748 1-(5-phosphoribosyl)- 56.9 53 0.0012 32.2 8.3 67 56-124 148-219 (233)
175 COG4122 Predicted O-methyltran 56.7 37 0.0008 34.0 7.1 60 20-80 81-143 (219)
176 PRK01911 ppnK inorganic polyph 56.5 67 0.0014 33.5 9.3 100 24-142 1-120 (292)
177 TIGR01163 rpe ribulose-phospha 56.3 45 0.00098 31.9 7.6 81 41-125 98-193 (210)
178 PRK02228 V-type ATP synthase s 55.9 1.4E+02 0.003 26.0 10.2 75 24-104 1-78 (100)
179 cd00381 IMPDH IMPDH: The catal 55.8 1.3E+02 0.0028 31.7 11.4 98 23-124 106-225 (325)
180 PRK12724 flagellar biosynthesi 55.7 1.2E+02 0.0025 33.6 11.2 98 23-122 252-364 (432)
181 TIGR00308 TRM1 tRNA(guanine-26 55.7 2.4E+02 0.0052 30.5 13.6 92 24-121 70-169 (374)
182 PF03808 Glyco_tran_WecB: Glyc 55.6 1.5E+02 0.0032 28.1 10.9 78 23-104 48-134 (172)
183 PRK14098 glycogen synthase; Pr 55.2 91 0.002 34.6 10.7 113 23-142 336-451 (489)
184 PRK11889 flhF flagellar biosyn 55.0 1.4E+02 0.003 33.0 11.5 55 23-77 269-328 (436)
185 PRK15427 colanic acid biosynth 54.6 2.2E+02 0.0048 30.5 13.2 108 23-141 253-369 (406)
186 KOG3040 Predicted sugar phosph 54.6 41 0.00089 33.8 6.8 97 23-144 39-139 (262)
187 PRK13587 1-(5-phosphoribosyl)- 54.5 71 0.0015 32.0 8.9 67 57-124 151-220 (234)
188 PF07688 KaiA: KaiA domain; I 54.4 39 0.00084 34.8 6.8 77 26-105 3-80 (283)
189 PRK08385 nicotinate-nucleotide 54.0 1.2E+02 0.0026 31.5 10.6 94 26-124 157-258 (278)
190 cd03819 GT1_WavL_like This fam 53.4 2.5E+02 0.0054 28.2 12.9 109 23-141 216-329 (355)
191 PF04321 RmlD_sub_bind: RmlD s 53.3 26 0.00055 35.8 5.6 54 24-79 1-61 (286)
192 PRK07428 nicotinate-nucleotide 53.2 65 0.0014 33.6 8.5 94 26-124 169-270 (288)
193 PF03060 NMO: Nitronate monoox 53.2 1E+02 0.0022 32.4 10.2 82 41-125 130-219 (330)
194 PRK07649 para-aminobenzoate/an 52.4 18 0.00039 35.1 4.1 49 26-76 2-50 (195)
195 KOG1562 Spermidine synthase [A 52.4 49 0.0011 34.9 7.3 63 25-89 147-215 (337)
196 PRK03659 glutathione-regulated 52.0 67 0.0014 36.7 9.2 52 70-124 465-517 (601)
197 cd03820 GT1_amsD_like This fam 51.8 2.3E+02 0.0051 27.4 12.5 108 23-141 209-318 (348)
198 PF09936 Methyltrn_RNA_4: SAM- 51.6 1.2E+02 0.0026 29.7 9.3 99 25-129 44-162 (185)
199 PRK07259 dihydroorotate dehydr 51.3 2.5E+02 0.0054 28.8 12.5 58 85-142 223-286 (301)
200 PRK05581 ribulose-phosphate 3- 51.2 74 0.0016 30.7 8.2 56 70-125 132-198 (220)
201 COG0742 N6-adenine-specific me 51.1 31 0.00066 33.8 5.4 53 24-77 67-122 (187)
202 cd04723 HisA_HisF Phosphoribos 50.9 81 0.0018 31.4 8.6 67 56-124 148-217 (233)
203 PRK04302 triosephosphate isome 50.7 2.6E+02 0.0055 27.5 12.4 93 44-139 111-218 (223)
204 PF02581 TMP-TENI: Thiamine mo 50.7 84 0.0018 29.8 8.3 69 51-123 100-175 (180)
205 cd04732 HisA HisA. Phosphorib 50.4 1.9E+02 0.0042 28.1 11.1 68 55-124 147-218 (234)
206 PRK04180 pyridoxal biosynthesi 50.1 47 0.001 34.7 6.8 62 83-144 190-258 (293)
207 PRK12726 flagellar biosynthesi 49.7 1.9E+02 0.0042 31.7 11.6 55 23-77 234-293 (407)
208 cd03818 GT1_ExpC_like This fam 49.6 1.5E+02 0.0033 31.1 10.9 75 57-142 292-366 (396)
209 cd03313 enolase Enolase: Enola 49.5 1.2E+02 0.0026 33.0 10.3 105 29-134 209-344 (408)
210 PRK14974 cell division protein 49.4 2.5E+02 0.0054 29.9 12.4 98 23-124 168-286 (336)
211 PRK03562 glutathione-regulated 49.2 91 0.002 35.8 9.7 91 24-123 424-516 (621)
212 PRK10742 putative methyltransf 48.9 50 0.0011 33.8 6.7 57 23-82 110-177 (250)
213 PRK13125 trpA tryptophan synth 48.7 2.2E+02 0.0047 28.5 11.3 88 36-126 118-215 (244)
214 PLN02781 Probable caffeoyl-CoA 48.3 83 0.0018 31.4 8.2 59 20-78 90-153 (234)
215 PRK00994 F420-dependent methyl 47.6 1.3E+02 0.0028 30.8 9.2 79 45-126 29-116 (277)
216 cd03801 GT1_YqgM_like This fam 47.5 2.7E+02 0.0059 27.0 12.0 74 57-141 267-340 (374)
217 COG0673 MviM Predicted dehydro 47.4 1.9E+02 0.0042 29.5 11.1 108 23-142 3-117 (342)
218 TIGR00735 hisF imidazoleglycer 47.3 2E+02 0.0043 28.9 10.8 79 57-137 158-247 (254)
219 TIGR02082 metH 5-methyltetrahy 47.3 1.3E+02 0.0029 37.4 11.1 103 24-128 733-848 (1178)
220 cd00429 RPE Ribulose-5-phospha 47.2 62 0.0013 30.8 6.9 55 70-125 128-194 (211)
221 PRK06096 molybdenum transport 47.0 79 0.0017 32.9 8.0 68 52-124 195-263 (284)
222 PRK07028 bifunctional hexulose 46.7 4.2E+02 0.009 28.8 14.0 101 39-142 99-212 (430)
223 COG0157 NadC Nicotinate-nucleo 46.6 1.7E+02 0.0038 30.4 10.2 93 26-123 161-260 (280)
224 cd00452 KDPG_aldolase KDPG and 46.4 1.5E+02 0.0032 28.4 9.4 74 46-125 96-171 (190)
225 cd05212 NAD_bind_m-THF_DH_Cycl 46.3 72 0.0016 29.6 6.9 56 22-81 27-83 (140)
226 PLN02589 caffeoyl-CoA O-methyl 46.2 92 0.002 31.6 8.2 59 20-78 101-165 (247)
227 PRK06731 flhF flagellar biosyn 46.0 1.9E+02 0.0042 29.7 10.6 54 23-77 103-162 (270)
228 PRK06774 para-aminobenzoate sy 45.7 28 0.00061 33.4 4.2 74 26-103 2-79 (191)
229 PLN02823 spermine synthase 45.7 48 0.0011 35.2 6.3 55 23-80 127-187 (336)
230 cd00331 IGPS Indole-3-glycerol 45.3 1.8E+02 0.0039 28.3 9.9 68 72-139 48-117 (217)
231 PF03102 NeuB: NeuB family; I 45.2 83 0.0018 31.9 7.7 84 34-122 56-143 (241)
232 PRK14722 flhF flagellar biosyn 45.1 1.7E+02 0.0037 31.7 10.4 90 24-114 168-265 (374)
233 cd03804 GT1_wbaZ_like This fam 45.0 1.6E+02 0.0035 30.0 10.0 105 24-142 222-326 (351)
234 PF00534 Glycos_transf_1: Glyc 44.9 2.3E+02 0.0051 25.4 11.2 109 23-143 47-159 (172)
235 cd03825 GT1_wcfI_like This fam 44.8 73 0.0016 32.1 7.3 75 24-102 1-82 (365)
236 cd01948 EAL EAL domain. This d 44.7 89 0.0019 29.9 7.7 88 39-129 137-238 (240)
237 TIGR00566 trpG_papA glutamine 44.6 74 0.0016 30.5 7.0 74 26-103 2-79 (188)
238 PRK02083 imidazole glycerol ph 44.1 2.4E+02 0.0051 28.2 10.8 79 57-137 156-245 (253)
239 PRK06895 putative anthranilate 43.9 31 0.00067 33.1 4.2 31 24-54 2-32 (190)
240 cd01573 modD_like ModD; Quinol 43.5 1.2E+02 0.0026 31.2 8.7 68 51-124 188-257 (272)
241 TIGR03449 mycothiol_MshA UDP-N 43.4 3.5E+02 0.0077 28.2 12.5 107 24-141 253-367 (405)
242 PLN02476 O-methyltransferase 42.6 1.1E+02 0.0024 31.8 8.2 58 21-78 141-203 (278)
243 TIGR01302 IMP_dehydrog inosine 42.5 2.1E+02 0.0045 31.6 10.9 100 22-125 235-356 (450)
244 COG4262 Predicted spermidine s 42.4 51 0.0011 35.8 5.7 65 17-83 307-379 (508)
245 PF04131 NanE: Putative N-acet 42.3 2.8E+02 0.006 27.4 10.4 99 23-126 64-174 (192)
246 PLN02275 transferase, transfer 42.1 3.3E+02 0.0071 28.6 12.0 104 23-139 261-370 (371)
247 PRK05718 keto-hydroxyglutarate 42.0 3.3E+02 0.0071 27.0 11.2 92 41-137 10-105 (212)
248 cd05013 SIS_RpiR RpiR-like pro 41.8 2.2E+02 0.0048 24.5 9.1 85 25-111 15-102 (139)
249 COG1419 FlhF Flagellar GTP-bin 41.7 2.2E+02 0.0047 31.3 10.5 87 37-124 250-345 (407)
250 cd04951 GT1_WbdM_like This fam 41.5 2.2E+02 0.0048 28.5 10.3 105 23-141 219-325 (360)
251 TIGR00064 ftsY signal recognit 41.4 2.5E+02 0.0055 28.7 10.7 53 23-77 100-162 (272)
252 PRK13143 hisH imidazole glycer 41.3 66 0.0014 31.2 6.1 44 24-75 1-44 (200)
253 PRK13609 diacylglycerol glucos 41.2 4.3E+02 0.0094 27.5 12.8 105 23-141 230-337 (380)
254 cd08179 NADPH_BDH NADPH-depend 41.0 2.1E+02 0.0047 30.4 10.5 63 24-91 24-100 (375)
255 PRK11359 cyclic-di-GMP phospho 41.0 2.1E+02 0.0046 33.0 11.1 97 39-138 683-793 (799)
256 PRK07765 para-aminobenzoate sy 40.9 43 0.00092 33.0 4.7 79 24-103 1-83 (214)
257 PRK04885 ppnK inorganic polyph 40.7 94 0.002 31.9 7.3 85 24-142 1-93 (265)
258 TIGR00736 nifR3_rel_arch TIM-b 40.7 3.6E+02 0.0079 27.2 11.4 94 28-124 116-219 (231)
259 TIGR01163 rpe ribulose-phospha 40.4 2.5E+02 0.0055 26.6 10.0 57 83-139 43-100 (210)
260 TIGR00734 hisAF_rel hisA/hisF 40.3 1.6E+02 0.0035 29.2 8.8 68 55-124 142-212 (221)
261 cd04949 GT1_gtfA_like This fam 40.3 2.6E+02 0.0056 28.7 10.7 55 83-142 291-345 (372)
262 TIGR00696 wecB_tagA_cpsF bacte 40.2 2E+02 0.0044 27.6 9.1 60 23-84 48-115 (177)
263 TIGR03704 PrmC_rel_meth putati 40.2 3E+02 0.0065 27.7 10.8 52 23-77 110-161 (251)
264 cd08187 BDH Butanol dehydrogen 40.0 2E+02 0.0043 30.7 10.1 64 23-91 28-105 (382)
265 PRK12727 flagellar biosynthesi 39.9 2.2E+02 0.0048 32.5 10.6 54 23-77 380-436 (559)
266 PRK06512 thiamine-phosphate py 39.8 2.3E+02 0.005 28.2 9.8 66 54-123 119-190 (221)
267 PRK02615 thiamine-phosphate py 39.8 2.3E+02 0.0051 30.3 10.4 69 52-124 246-321 (347)
268 PRK14723 flhF flagellar biosyn 39.6 2.3E+02 0.005 33.7 11.0 115 24-141 216-348 (767)
269 PRK12723 flagellar biosynthesi 39.6 3.8E+02 0.0082 29.1 12.1 91 23-115 206-306 (388)
270 PRK03708 ppnK inorganic polyph 39.4 2.1E+02 0.0046 29.4 9.8 100 24-142 1-112 (277)
271 cd04731 HisF The cyclase subun 39.3 1.6E+02 0.0034 29.2 8.6 71 53-125 26-100 (243)
272 cd03812 GT1_CapH_like This fam 39.2 2.5E+02 0.0055 28.1 10.3 108 23-143 223-332 (358)
273 COG1091 RfbD dTDP-4-dehydrorha 39.2 61 0.0013 33.7 5.7 55 24-81 1-62 (281)
274 PRK09490 metH B12-dependent me 39.2 2E+02 0.0043 36.0 10.9 101 24-126 752-865 (1229)
275 PRK08007 para-aminobenzoate sy 39.0 36 0.00079 32.7 3.9 74 26-103 2-79 (187)
276 cd05014 SIS_Kpsf KpsF-like pro 39.0 1.2E+02 0.0026 26.4 7.0 78 32-112 11-90 (128)
277 KOG4175 Tryptophan synthase al 38.9 93 0.002 31.1 6.5 42 95-136 94-141 (268)
278 PRK02155 ppnK NAD(+)/NADH kina 38.9 2.7E+02 0.006 28.9 10.5 99 25-142 7-119 (291)
279 TIGR02855 spore_yabG sporulati 38.8 2.3E+02 0.005 29.5 9.6 54 20-75 101-159 (283)
280 PRK15490 Vi polysaccharide bio 38.8 5.7E+02 0.012 29.5 13.6 104 23-138 429-534 (578)
281 TIGR00959 ffh signal recogniti 38.5 2.8E+02 0.006 30.6 11.0 53 23-77 128-190 (428)
282 PF01729 QRPTase_C: Quinolinat 38.5 93 0.002 29.8 6.5 94 26-123 53-153 (169)
283 PF00249 Myb_DNA-binding: Myb- 38.2 1.1E+02 0.0024 22.5 5.6 45 195-242 3-47 (48)
284 cd05844 GT1_like_7 Glycosyltra 38.0 4.3E+02 0.0093 26.7 11.9 108 23-141 219-335 (367)
285 cd04733 OYE_like_2_FMN Old yel 38.0 2.7E+02 0.0059 29.2 10.6 40 85-124 281-320 (338)
286 cd04724 Tryptophan_synthase_al 38.0 4.3E+02 0.0092 26.5 11.8 101 23-126 104-216 (242)
287 PRK13125 trpA tryptophan synth 38.0 1.2E+02 0.0027 30.3 7.6 55 86-140 64-126 (244)
288 PRK04338 N(2),N(2)-dimethylgua 38.0 2E+02 0.0044 31.0 9.7 78 24-108 82-162 (382)
289 PRK08649 inosine 5-monophospha 37.9 4.7E+02 0.01 28.2 12.4 66 55-124 142-214 (368)
290 TIGR03499 FlhF flagellar biosy 37.8 94 0.002 31.9 6.9 53 24-77 225-280 (282)
291 PRK04128 1-(5-phosphoribosyl)- 37.8 1.5E+02 0.0034 29.5 8.2 66 55-124 144-210 (228)
292 TIGR00417 speE spermidine synt 37.5 2.2E+02 0.0049 28.8 9.6 56 23-81 96-157 (270)
293 KOG3111 D-ribulose-5-phosphate 37.5 3.8E+02 0.0083 26.7 10.4 102 37-141 102-218 (224)
294 PRK09140 2-dehydro-3-deoxy-6-p 37.5 2.6E+02 0.0057 27.4 9.7 95 41-137 5-101 (206)
295 COG1927 Mtd Coenzyme F420-depe 37.5 3E+02 0.0065 27.8 9.8 79 45-126 29-117 (277)
296 PRK03522 rumB 23S rRNA methylu 37.4 1.9E+02 0.0042 30.0 9.2 78 23-106 195-276 (315)
297 PF07652 Flavi_DEAD: Flaviviru 37.3 1.1E+02 0.0024 28.9 6.5 85 22-106 32-136 (148)
298 COG2200 Rtn c-di-GMP phosphodi 37.2 1.9E+02 0.0041 29.2 8.9 98 37-137 139-250 (256)
299 PRK00811 spermidine synthase; 37.1 1.6E+02 0.0035 30.2 8.5 58 21-81 98-162 (283)
300 PRK13566 anthranilate synthase 37.1 48 0.001 38.9 5.1 78 22-103 525-605 (720)
301 smart00052 EAL Putative diguan 37.1 1.5E+02 0.0033 28.2 8.0 89 38-129 137-239 (241)
302 COG2109 BtuR ATP:corrinoid ade 37.0 1.2E+02 0.0026 30.0 7.0 46 69-114 122-172 (198)
303 TIGR01425 SRP54_euk signal rec 36.9 4.6E+02 0.01 29.0 12.3 54 23-78 128-191 (429)
304 PLN02335 anthranilate synthase 36.9 52 0.0011 32.6 4.7 80 20-103 15-98 (222)
305 PRK06543 nicotinate-nucleotide 36.6 4E+02 0.0086 27.8 11.2 90 26-122 162-262 (281)
306 COG1748 LYS9 Saccharopine dehy 36.6 2.5E+02 0.0054 30.7 10.0 18 199-216 242-259 (389)
307 cd03785 GT1_MurG MurG is an N- 36.5 4.7E+02 0.01 26.5 12.8 64 70-141 253-323 (350)
308 cd03816 GT1_ALG1_like This fam 36.2 5.1E+02 0.011 27.7 12.5 107 23-142 269-381 (415)
309 cd03806 GT1_ALG11_like This fa 36.1 4.6E+02 0.01 28.2 12.2 108 23-142 273-392 (419)
310 PRK13170 hisH imidazole glycer 36.1 93 0.002 30.1 6.2 44 24-75 1-44 (196)
311 TIGR03061 pip_yhgE_Nterm YhgE/ 35.8 97 0.0021 28.9 6.1 79 22-106 42-131 (164)
312 CHL00200 trpA tryptophan synth 35.6 5E+02 0.011 26.6 11.9 101 23-126 119-232 (263)
313 PF03328 HpcH_HpaI: HpcH/HpaI 35.6 2.3E+02 0.005 27.7 9.0 84 54-139 8-106 (221)
314 cd03799 GT1_amsK_like This is 35.3 4E+02 0.0087 26.5 11.0 76 57-142 247-327 (355)
315 cd00532 MGS-like MGS-like doma 35.2 1.1E+02 0.0024 26.7 6.1 25 30-54 8-32 (112)
316 cd08185 Fe-ADH1 Iron-containin 35.2 1.9E+02 0.004 30.9 8.9 63 24-91 26-102 (380)
317 PRK08883 ribulose-phosphate 3- 35.1 1.5E+02 0.0032 29.5 7.6 81 41-125 100-195 (220)
318 PRK03372 ppnK inorganic polyph 34.8 3.9E+02 0.0085 28.0 10.9 100 24-142 6-128 (306)
319 PRK01581 speE spermidine synth 34.8 2.3E+02 0.0049 30.8 9.3 57 21-80 172-237 (374)
320 PRK05848 nicotinate-nucleotide 34.6 3.9E+02 0.0084 27.6 10.7 94 26-124 155-256 (273)
321 PRK14075 pnk inorganic polypho 34.5 3.5E+02 0.0077 27.4 10.4 92 24-142 1-94 (256)
322 TIGR01302 IMP_dehydrog inosine 34.1 1.3E+02 0.0029 33.0 7.7 63 57-123 227-291 (450)
323 PRK04457 spermidine synthase; 34.1 1.9E+02 0.0042 29.3 8.4 53 23-78 90-145 (262)
324 PLN02898 HMP-P kinase/thiamin- 34.0 2.1E+02 0.0045 31.9 9.3 65 52-120 396-467 (502)
325 PF01959 DHQS: 3-dehydroquinat 33.8 3.5E+02 0.0077 29.1 10.4 71 70-141 97-169 (354)
326 PRK05031 tRNA (uracil-5-)-meth 33.6 4.3E+02 0.0093 28.2 11.3 78 24-106 229-322 (362)
327 cd04726 KGPDC_HPS 3-Keto-L-gul 33.6 1.4E+02 0.0029 28.5 6.9 83 55-139 11-99 (202)
328 PHA02518 ParA-like protein; Pr 33.4 1E+02 0.0022 29.2 6.0 12 23-34 29-40 (211)
329 COG0313 Predicted methyltransf 33.3 3.3E+02 0.0072 28.3 9.8 80 23-107 30-117 (275)
330 PRK00726 murG undecaprenyldiph 33.2 5.5E+02 0.012 26.3 13.0 54 85-141 263-323 (357)
331 PLN02819 lysine-ketoglutarate 33.2 5.9E+02 0.013 31.5 13.4 112 23-141 569-694 (1042)
332 TIGR01361 DAHP_synth_Bsub phos 33.2 3.5E+02 0.0076 27.6 10.1 71 57-128 149-233 (260)
333 TIGR02149 glgA_Coryne glycogen 33.1 5.5E+02 0.012 26.3 12.0 108 23-141 229-351 (388)
334 cd01568 QPRTase_NadC Quinolina 33.1 2.2E+02 0.0047 29.2 8.6 94 25-124 153-254 (269)
335 cd00561 CobA_CobO_BtuR ATP:cor 33.1 1.5E+02 0.0033 28.1 6.9 46 69-114 95-145 (159)
336 cd08194 Fe-ADH6 Iron-containin 32.9 3.2E+02 0.007 29.1 10.2 63 24-91 24-99 (375)
337 TIGR01133 murG undecaprenyldip 32.8 5.3E+02 0.012 26.0 13.0 55 85-141 261-320 (348)
338 CHL00101 trpG anthranilate syn 32.6 57 0.0012 31.3 4.1 47 26-75 2-49 (190)
339 PF07279 DUF1442: Protein of u 32.5 2.2E+02 0.0048 28.6 8.2 72 24-102 71-147 (218)
340 PRK09860 putative alcohol dehy 32.5 2.9E+02 0.0062 29.7 9.8 63 24-91 32-107 (383)
341 PRK05637 anthranilate synthase 32.5 75 0.0016 31.2 5.0 76 24-103 2-80 (208)
342 PRK01362 putative translaldola 32.5 2.9E+02 0.0064 27.4 9.1 80 42-124 96-184 (214)
343 cd04731 HisF The cyclase subun 32.5 2.2E+02 0.0047 28.2 8.4 56 69-124 162-222 (243)
344 PRK10416 signal recognition pa 32.4 3.9E+02 0.0085 28.0 10.6 54 22-77 141-204 (318)
345 cd02801 DUS_like_FMN Dihydrour 32.4 4.7E+02 0.01 25.2 10.9 91 31-123 107-211 (231)
346 PRK06843 inosine 5-monophospha 32.3 1.9E+02 0.0042 31.6 8.4 54 69-123 165-220 (404)
347 PRK02649 ppnK inorganic polyph 32.2 3.4E+02 0.0074 28.5 10.0 99 25-142 3-124 (305)
348 COG0134 TrpC Indole-3-glycerol 32.2 3.3E+02 0.0071 28.0 9.5 77 44-125 153-236 (254)
349 cd08170 GlyDH Glycerol dehydro 32.0 2.3E+02 0.0049 29.8 8.8 76 24-104 23-109 (351)
350 PRK10060 RNase II stability mo 31.9 3.7E+02 0.008 30.9 11.2 100 37-139 544-657 (663)
351 PF01564 Spermine_synth: Sperm 31.9 81 0.0017 31.8 5.2 63 19-84 96-165 (246)
352 COG0421 SpeE Spermidine syntha 31.8 64 0.0014 33.5 4.5 55 24-81 101-161 (282)
353 PF01081 Aldolase: KDPG and KH 31.8 1.1E+02 0.0023 30.2 5.8 59 74-134 36-95 (196)
354 PLN02775 Probable dihydrodipic 31.6 5.2E+02 0.011 27.0 11.1 104 23-130 11-139 (286)
355 TIGR01306 GMP_reduct_2 guanosi 31.6 6.5E+02 0.014 26.7 12.5 99 24-125 109-227 (321)
356 PRK00771 signal recognition pa 31.5 5.3E+02 0.011 28.5 11.8 55 23-78 123-184 (437)
357 PLN02935 Bifunctional NADH kin 31.5 3.9E+02 0.0085 30.2 10.7 100 24-142 195-318 (508)
358 cd03808 GT1_cap1E_like This fa 31.3 4.3E+02 0.0092 25.7 10.2 52 84-141 277-328 (359)
359 COG0352 ThiE Thiamine monophos 31.3 4.5E+02 0.0098 26.1 10.2 69 52-124 110-185 (211)
360 PRK06978 nicotinate-nucleotide 31.2 3.6E+02 0.0077 28.3 9.8 92 25-123 178-275 (294)
361 cd03115 SRP The signal recogni 31.1 2.9E+02 0.0064 25.4 8.6 53 23-77 28-90 (173)
362 TIGR02990 ectoine_eutA ectoine 30.9 2.3E+02 0.005 28.6 8.2 74 24-100 121-210 (239)
363 PRK07414 cob(I)yrinic acid a,c 30.9 1.4E+02 0.0031 29.0 6.4 47 68-114 114-165 (178)
364 cd04740 DHOD_1B_like Dihydroor 30.9 5.9E+02 0.013 25.9 13.0 58 85-142 220-283 (296)
365 cd03811 GT1_WabH_like This fam 30.8 5E+02 0.011 25.1 10.7 65 70-141 264-328 (353)
366 PF02572 CobA_CobO_BtuR: ATP:c 30.7 1E+02 0.0023 29.6 5.5 47 68-114 95-146 (172)
367 cd03807 GT1_WbnK_like This fam 30.7 5.2E+02 0.011 25.2 11.0 64 70-142 269-332 (365)
368 PRK09016 quinolinate phosphori 30.6 2.6E+02 0.0057 29.3 8.7 91 26-123 182-278 (296)
369 PRK05670 anthranilate synthase 30.6 70 0.0015 30.5 4.3 48 26-75 2-49 (189)
370 PRK08072 nicotinate-nucleotide 30.5 3.4E+02 0.0074 28.1 9.6 92 25-124 160-259 (277)
371 TIGR01305 GMP_reduct_1 guanosi 30.5 1.9E+02 0.0041 31.0 7.7 56 69-125 121-178 (343)
372 PRK11829 biofilm formation reg 30.5 3.3E+02 0.0071 30.9 10.4 95 37-136 542-652 (660)
373 TIGR01182 eda Entner-Doudoroff 30.4 3.9E+02 0.0085 26.4 9.6 82 50-135 13-96 (204)
374 PRK08185 hypothetical protein; 30.3 1.9E+02 0.004 30.2 7.6 66 54-122 149-225 (283)
375 cd08181 PPD-like 1,3-propanedi 30.3 3.9E+02 0.0085 28.2 10.3 63 24-91 26-102 (357)
376 cd08176 LPO Lactadehyde:propan 30.2 3.6E+02 0.0077 28.8 10.0 63 24-91 29-104 (377)
377 TIGR03590 PseG pseudaminic aci 30.2 3E+02 0.0066 27.9 9.1 75 23-106 31-113 (279)
378 PF06925 MGDG_synth: Monogalac 30.2 1.9E+02 0.0041 26.9 7.1 63 59-125 81-144 (169)
379 TIGR01304 IMP_DH_rel_2 IMP deh 30.2 7.3E+02 0.016 26.8 12.4 66 55-124 143-215 (369)
380 PRK03692 putative UDP-N-acetyl 30.1 4.5E+02 0.0097 26.6 10.2 75 23-101 105-187 (243)
381 cd02809 alpha_hydroxyacid_oxid 30.1 5.4E+02 0.012 26.5 11.1 70 53-125 180-256 (299)
382 TIGR00735 hisF imidazoleglycer 30.0 3.4E+02 0.0074 27.2 9.4 72 53-125 29-103 (254)
383 cd06304 PBP1_BmpA_like Peripla 29.9 3.3E+02 0.0071 26.6 9.1 69 32-105 13-89 (260)
384 PRK15128 23S rRNA m(5)C1962 me 29.9 1.9E+02 0.004 31.5 7.9 54 24-77 244-301 (396)
385 cd02930 DCR_FMN 2,4-dienoyl-Co 29.8 3E+02 0.0065 29.1 9.3 40 85-124 265-304 (353)
386 PRK13146 hisH imidazole glycer 29.7 1.3E+02 0.0028 29.4 6.1 45 23-75 1-47 (209)
387 TIGR00511 ribulose_e2b2 ribose 29.6 2.3E+02 0.005 29.6 8.2 79 23-106 141-227 (301)
388 PRK05986 cob(I)alamin adenolsy 29.6 1.5E+02 0.0034 29.0 6.5 46 68-113 114-164 (191)
389 PF00290 Trp_syntA: Tryptophan 29.6 91 0.002 32.0 5.1 52 84-135 74-132 (259)
390 cd03805 GT1_ALG2_like This fam 29.4 6.4E+02 0.014 25.9 11.9 108 23-142 245-364 (392)
391 TIGR01859 fruc_bis_ald_ fructo 29.3 2.1E+02 0.0046 29.6 7.8 81 53-140 152-241 (282)
392 PLN00191 enolase 29.2 4.5E+02 0.0097 29.3 10.8 108 29-137 239-379 (457)
393 cd08174 G1PDH-like Glycerol-1- 29.2 2.9E+02 0.0064 28.7 9.0 75 24-103 26-106 (331)
394 PRK03604 moaC bifunctional mol 29.0 1.8E+02 0.0038 30.8 7.2 41 11-51 143-192 (312)
395 PLN02366 spermidine synthase 29.0 1.6E+02 0.0036 30.8 7.0 59 21-81 113-177 (308)
396 PRK05458 guanosine 5'-monophos 29.0 2E+02 0.0044 30.5 7.7 65 57-123 100-166 (326)
397 PRK06559 nicotinate-nucleotide 29.0 5.3E+02 0.011 27.0 10.6 91 25-122 169-266 (290)
398 TIGR03572 WbuZ glycosyl amidat 28.9 3.1E+02 0.0067 26.9 8.7 70 54-125 30-103 (232)
399 PRK09496 trkA potassium transp 28.8 3.7E+02 0.008 28.9 10.0 95 23-123 23-122 (453)
400 PRK10909 rsmD 16S rRNA m(2)G96 28.8 4.2E+02 0.0092 25.8 9.5 77 24-105 77-160 (199)
401 PRK03612 spermidine synthase; 28.8 2.4E+02 0.0052 31.7 8.7 58 21-81 319-385 (521)
402 cd03798 GT1_wlbH_like This fam 28.7 4.8E+02 0.01 25.4 10.1 53 84-142 292-344 (377)
403 PRK06806 fructose-bisphosphate 28.6 2.6E+02 0.0056 29.0 8.3 70 53-124 152-229 (281)
404 TIGR00875 fsa_talC_mipB fructo 28.6 3.1E+02 0.0067 27.3 8.5 81 42-126 96-186 (213)
405 COG0159 TrpA Tryptophan syntha 28.6 1.9E+02 0.0041 29.9 7.2 57 85-141 82-145 (265)
406 cd06354 PBP1_BmpA_PnrA_like Pe 28.5 3.2E+02 0.0068 26.9 8.8 64 36-104 21-89 (265)
407 PRK00748 1-(5-phosphoribosyl)- 28.5 3.2E+02 0.0069 26.6 8.7 71 54-126 30-104 (233)
408 cd00405 PRAI Phosphoribosylant 28.4 3.3E+02 0.0071 26.2 8.6 51 69-122 120-178 (203)
409 COG0118 HisH Glutamine amidotr 28.3 98 0.0021 30.8 4.8 38 23-60 1-38 (204)
410 TIGR02472 sucr_P_syn_N sucrose 28.2 7.4E+02 0.016 26.6 12.2 65 70-141 341-405 (439)
411 cd03316 MR_like Mandelate race 28.2 3.1E+02 0.0067 28.7 9.1 37 87-123 231-267 (357)
412 PRK08535 translation initiatio 28.2 2.7E+02 0.0059 29.2 8.5 79 23-106 146-232 (310)
413 TIGR03365 Bsubt_queE 7-cyano-7 28.1 6.1E+02 0.013 25.3 12.3 101 25-129 75-187 (238)
414 PRK04128 1-(5-phosphoribosyl)- 28.1 5.6E+02 0.012 25.5 10.4 70 54-125 30-102 (228)
415 PRK01033 imidazole glycerol ph 28.0 3.3E+02 0.0072 27.5 8.9 68 56-124 154-225 (258)
416 PF01993 MTD: methylene-5,6,7, 27.9 1.2E+02 0.0026 31.0 5.5 64 62-128 54-117 (276)
417 TIGR02085 meth_trns_rumB 23S r 27.8 4.1E+02 0.0088 28.4 10.0 94 23-125 255-352 (374)
418 PLN02617 imidazole glycerol ph 27.8 4.9E+02 0.011 29.6 10.9 68 70-137 453-530 (538)
419 cd02803 OYE_like_FMN_family Ol 27.7 4E+02 0.0087 27.4 9.7 41 83-123 268-308 (327)
420 PRK00025 lpxB lipid-A-disaccha 27.6 7E+02 0.015 25.8 12.3 22 120-141 319-340 (380)
421 COG0626 MetC Cystathionine bet 27.5 5.2E+02 0.011 28.3 10.7 98 22-123 101-205 (396)
422 TIGR00708 cobA cob(I)alamin ad 27.5 1.7E+02 0.0036 28.3 6.3 46 68-113 96-146 (173)
423 PRK13398 3-deoxy-7-phosphohept 27.5 6.9E+02 0.015 25.6 11.2 67 57-124 151-230 (266)
424 cd00886 MogA_MoaB MogA_MoaB fa 27.4 1.4E+02 0.003 27.7 5.6 42 35-76 21-68 (152)
425 PRK02290 3-dehydroquinate synt 27.4 4.6E+02 0.01 28.2 9.9 69 70-140 89-159 (344)
426 PRK13789 phosphoribosylamine-- 27.3 7.3E+02 0.016 27.0 12.0 57 23-81 4-80 (426)
427 PRK06015 keto-hydroxyglutarate 27.3 4.1E+02 0.0089 26.2 9.1 59 75-135 33-92 (201)
428 TIGR00737 nifR3_yhdG putative 27.3 6.2E+02 0.013 26.3 11.0 94 29-124 113-221 (319)
429 TIGR03128 RuMP_HxlA 3-hexulose 27.3 5.5E+02 0.012 24.4 13.6 85 37-124 92-185 (206)
430 TIGR03569 NeuB_NnaB N-acetylne 27.3 2.9E+02 0.0062 29.4 8.5 77 34-115 76-152 (329)
431 PF00977 His_biosynth: Histidi 27.2 2.5E+02 0.0054 27.9 7.7 69 55-124 148-219 (229)
432 PRK01231 ppnK inorganic polyph 27.2 6.5E+02 0.014 26.2 11.0 100 24-142 5-118 (295)
433 PRK01395 V-type ATP synthase s 26.9 3E+02 0.0064 24.2 7.2 73 24-103 4-77 (104)
434 cd01572 QPRTase Quinolinate ph 26.7 3.8E+02 0.0083 27.5 9.1 88 26-122 155-251 (268)
435 PRK01438 murD UDP-N-acetylmura 26.7 4.8E+02 0.01 28.5 10.5 90 24-114 17-139 (480)
436 PF00497 SBP_bac_3: Bacterial 26.5 2.3E+02 0.0049 26.2 7.0 52 22-77 109-160 (225)
437 TIGR00078 nadC nicotinate-nucl 26.3 4.6E+02 0.01 26.9 9.6 91 25-124 150-249 (265)
438 PRK07807 inosine 5-monophospha 26.3 5.6E+02 0.012 28.7 10.9 101 22-125 238-359 (479)
439 PRK13111 trpA tryptophan synth 26.2 7.1E+02 0.015 25.4 12.2 98 26-126 121-229 (258)
440 cd08551 Fe-ADH iron-containing 26.2 3.7E+02 0.0079 28.4 9.2 63 24-91 24-99 (370)
441 PRK08999 hypothetical protein; 26.1 2.8E+02 0.006 28.5 8.1 68 52-123 232-306 (312)
442 PF01008 IF-2B: Initiation fac 26.0 1.1E+02 0.0023 31.2 4.9 79 23-105 133-219 (282)
443 cd08171 GlyDH-like2 Glycerol d 26.0 3.3E+02 0.0071 28.7 8.8 77 23-104 22-110 (345)
444 PLN02716 nicotinate-nucleotide 25.9 4.2E+02 0.0091 28.0 9.3 97 26-122 173-287 (308)
445 cd02932 OYE_YqiM_FMN Old yello 25.7 4E+02 0.0088 27.9 9.3 41 84-124 278-318 (336)
446 PRK13695 putative NTPase; Prov 25.7 4.6E+02 0.01 24.2 8.9 71 69-140 96-172 (174)
447 cd00956 Transaldolase_FSA Tran 25.6 4.3E+02 0.0093 26.0 9.0 74 50-126 106-186 (211)
448 PRK10415 tRNA-dihydrouridine s 25.5 5.5E+02 0.012 26.9 10.3 95 28-124 114-223 (321)
449 KOG1601 GATA-4/5/6 transcripti 25.4 9.3 0.0002 37.4 -2.8 117 20-139 13-136 (340)
450 PF05582 Peptidase_U57: YabG p 25.4 5.1E+02 0.011 27.1 9.6 56 18-75 100-160 (287)
451 PRK05286 dihydroorotate dehydr 25.4 6.4E+02 0.014 26.6 10.8 55 87-141 278-341 (344)
452 COG1856 Uncharacterized homolo 25.2 4.3E+02 0.0093 27.0 8.7 69 55-127 167-253 (275)
453 TIGR00138 gidB 16S rRNA methyl 25.1 6E+02 0.013 24.1 10.5 84 23-114 66-153 (181)
454 PRK02228 V-type ATP synthase s 25.1 4.1E+02 0.0088 23.0 7.7 64 22-89 18-87 (100)
455 PRK13585 1-(5-phosphoribosyl)- 25.1 6.6E+02 0.014 24.6 10.4 68 55-124 150-221 (241)
456 cd02810 DHOD_DHPD_FMN Dihydroo 25.0 6.3E+02 0.014 25.5 10.4 39 85-123 230-270 (289)
457 TIGR01579 MiaB-like-C MiaB-lik 24.9 5E+02 0.011 28.0 10.1 91 35-139 12-107 (414)
458 PRK13849 putative crown gall t 24.9 1.7E+02 0.0037 29.1 6.1 13 23-35 30-42 (231)
459 COG2089 SpsE Sialic acid synth 24.8 4.4E+02 0.0095 28.3 9.1 87 33-124 89-179 (347)
460 cd03795 GT1_like_4 This family 24.8 6.9E+02 0.015 24.8 13.4 109 23-142 218-332 (357)
461 cd06296 PBP1_CatR_like Ligand- 24.7 4.2E+02 0.0091 25.5 8.8 66 34-105 16-87 (270)
462 cd08182 HEPD Hydroxyethylphosp 24.7 3.5E+02 0.0077 28.6 8.8 63 24-91 24-96 (367)
463 COG3967 DltE Short-chain dehyd 24.7 4.6E+02 0.01 26.6 8.7 78 24-103 6-85 (245)
464 cd02911 arch_FMN Archeal FMN-b 24.6 7.1E+02 0.015 24.8 12.1 91 29-124 122-219 (233)
465 PRK10867 signal recognition pa 24.5 5.4E+02 0.012 28.4 10.3 53 23-77 129-191 (433)
466 TIGR02095 glgA glycogen/starch 24.4 7.7E+02 0.017 26.7 11.6 66 70-142 366-437 (473)
467 COG2070 Dioxygenases related t 24.3 4.4E+02 0.0095 28.0 9.3 75 45-122 125-210 (336)
468 PRK15454 ethanol dehydrogenase 24.3 3.2E+02 0.0069 29.5 8.4 62 24-90 50-124 (395)
469 PRK02090 phosphoadenosine phos 24.3 3.3E+02 0.0072 27.1 8.0 73 35-107 28-104 (241)
470 COG3959 Transketolase, N-termi 24.2 1.6E+02 0.0034 29.9 5.5 54 26-79 174-242 (243)
471 cd06338 PBP1_ABC_ligand_bindin 24.2 7.5E+02 0.016 25.0 11.5 65 36-104 158-230 (345)
472 cd06284 PBP1_LacI_like_6 Ligan 24.2 4E+02 0.0087 25.5 8.5 62 35-103 17-84 (267)
473 COG3836 HpcH 2,4-dihydroxyhept 24.1 6.5E+02 0.014 25.8 9.8 96 39-137 8-109 (255)
474 TIGR01305 GMP_reduct_1 guanosi 24.1 8.9E+02 0.019 26.1 11.3 100 23-125 121-241 (343)
475 TIGR01303 IMP_DH_rel_1 IMP deh 24.0 2.7E+02 0.0059 31.0 8.0 66 55-123 225-292 (475)
476 PRK05234 mgsA methylglyoxal sy 23.8 5.9E+02 0.013 23.6 10.0 76 22-104 3-83 (142)
477 PRK01906 tetraacyldisaccharide 23.8 1.1E+02 0.0024 32.6 4.6 50 46-104 126-175 (338)
478 cd00758 MoCF_BD MoCF_BD: molyb 23.6 2.5E+02 0.0055 25.2 6.4 42 35-76 20-65 (133)
479 cd04946 GT1_AmsK_like This fam 23.6 7.9E+02 0.017 26.1 11.3 78 55-141 298-376 (407)
480 TIGR03572 WbuZ glycosyl amidat 23.5 4.9E+02 0.011 25.5 9.0 66 57-124 156-226 (232)
481 COG2265 TrmA SAM-dependent met 23.5 3.8E+02 0.0082 29.6 8.8 79 23-105 315-397 (432)
482 PF10237 N6-adenineMlase: Prob 23.3 2.3E+02 0.0049 27.1 6.2 71 53-124 70-144 (162)
483 PRK14967 putative methyltransf 23.2 6.9E+02 0.015 24.2 10.3 47 25-76 61-108 (223)
484 cd06282 PBP1_GntR_like_2 Ligan 23.2 5E+02 0.011 24.8 9.0 66 35-105 17-88 (266)
485 PF04309 G3P_antiterm: Glycero 23.2 1.1E+02 0.0023 29.7 4.0 61 56-122 106-166 (175)
486 cd03802 GT1_AviGT4_like This f 23.2 7.3E+02 0.016 24.5 12.3 105 23-140 197-306 (335)
487 PRK14949 DNA polymerase III su 23.2 2.2E+02 0.0047 34.6 7.2 73 69-143 119-194 (944)
488 PRK05567 inosine 5'-monophosph 23.1 3.4E+02 0.0074 30.2 8.6 64 57-123 230-295 (486)
489 PF10672 Methyltrans_SAM: S-ad 23.0 3.4E+02 0.0073 28.3 7.9 53 24-77 147-203 (286)
490 PRK10307 putative glycosyl tra 23.0 6.1E+02 0.013 26.6 10.3 107 23-141 259-372 (412)
491 cd06346 PBP1_ABC_ligand_bindin 22.9 7.8E+02 0.017 24.7 11.0 63 38-104 156-226 (312)
492 PRK03378 ppnK inorganic polyph 22.8 3.7E+02 0.0081 27.9 8.3 100 24-142 6-119 (292)
493 PRK14329 (dimethylallyl)adenos 22.8 4.6E+02 0.01 29.0 9.4 104 23-140 23-139 (467)
494 cd02940 DHPD_FMN Dihydropyrimi 22.8 5.3E+02 0.011 26.6 9.4 40 85-124 239-280 (299)
495 COG3010 NanE Putative N-acetyl 22.7 8E+02 0.017 24.8 10.2 84 52-139 133-225 (229)
496 PTZ00170 D-ribulose-5-phosphat 22.6 4E+02 0.0088 26.4 8.2 99 39-140 106-221 (228)
497 PF04131 NanE: Putative N-acet 22.3 2.2E+02 0.0047 28.1 5.9 71 47-124 45-117 (192)
498 cd06325 PBP1_ABC_uncharacteriz 22.3 4.8E+02 0.01 25.2 8.7 57 20-76 128-191 (281)
499 PRK08335 translation initiatio 22.2 3.9E+02 0.0085 27.7 8.2 78 23-105 135-220 (275)
500 PLN02316 synthase/transferase 22.2 6.8E+02 0.015 30.9 11.2 25 118-142 974-998 (1036)
No 1
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.98 E-value=3.8e-33 Score=285.82 Aligned_cols=242 Identities=26% Similarity=0.321 Sum_probs=186.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-C---CCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-E---MDL 97 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~---~~i 97 (529)
..++||+|||++..+..++..|+..+|+|..|.++++|++++.+.. +|+||+|++||+|||+++|.+++. . ..+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 3589999999999999999999999999999999999999998765 999999999999999999998875 3 468
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccCCCcccCCCchhH-HhhhhcccCCC-CCC----
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEF-EKSYRKRKDQD-GED---- 171 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~~~~~~~~~~~~-~~~~~kr~~~~-~~~---- 171 (529)
|||++|++.+.+...+++..||+|||.||+++.+|..++...+..+.............+ .+..++..+.. ..+
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~~~~~~~~le~~e~~~~~~e~~~~~~~~~~ 170 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFLLDQNLYLELQELRRRTEELAQIEDNLDE 170 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999766544321111111111111 00011100000 000
Q ss_pred CCCCC--CCCCCCccccccCCCcceehhHHHHHHHHHHHHhcCCCc------------------chHHHHHHhcCCCCCC
Q 009670 172 EDEDG--DDDGHENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDK------------------AVPKKILDLMNVEGLT 231 (529)
Q Consensus 172 ~~~~~--~~~~~~~e~~~~~kk~r~vw~~~L~~kflaavn~lGldk------------------avPd~IL~~mk~~~LT 231 (529)
..+.. ..+.++.+ ...|+.|++.+.+.++.. +|+++ ++||.|| +|+++||
T Consensus 171 t~~~L~~~~E~R~~e------tg~H~~Rv~~~~~~lAe~--lgLse~~v~~i~~AapLHDIGKvaiPD~IL--lKpg~Lt 240 (360)
T COG3437 171 TLEELAALLEVRDYE------TGDHLERVAQYSELLAEL--LGLSEEEVDLIKKAAPLHDIGKVAIPDSIL--LKPGKLT 240 (360)
T ss_pred HHHHHHHHHHhcccc------hhhHHHHHHHHHHHHHHH--hCCCHHHHHHHHhccchhhcccccCChHHh--cCCCCCC
Confidence 00000 00112222 336778888888777766 88876 9999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCchhhhhhhhhhcCCCCccCCCCc
Q 009670 232 RENVASHLQKFRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGALDGFGGSHSVNSPGR 289 (529)
Q Consensus 232 ~eEvAshLqkyr~~Lk~~~~~~~~~~g~~~l~~sd~~~l~~aa~ial~hhe~~dGsG~ 289 (529)
.||++. |+.|+. +|.++|+.+.. +++.|++||+.|||||||||-
T Consensus 241 ~ee~~i--------mk~H~~-----~G~~il~~s~~-~mq~a~eIa~~HHErwDGsGY 284 (360)
T COG3437 241 SEEFEI--------MKGHPI-----LGAEILKSSER-LMQVAAEIARHHHERWDGSGY 284 (360)
T ss_pred HHHHHH--------HhcchH-----HHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCC
Confidence 999555 999999 99999988776 999999999999999999994
No 2
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-23 Score=203.07 Aligned_cols=190 Identities=25% Similarity=0.401 Sum_probs=148.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
|+|||||||+.+.++.+.+++. .||.++ +|.+.++|..++++.. ||||++|+.||+.+|++|+..++ ....+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 6899999999999999999998 688866 8899999999999875 89999999999999999999775 56788899
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccCCCcccCCCchhHHhhhhcccCCCCCCCCCCCCCCC
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEFEKSYRKRKDQDGEDEDEDGDDDG 180 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~~~~ 180 (529)
++|+..+.+.+.+|+++||.|||+|||..++|..++.+..+++.......... |...++....
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~~~~~s-------------Q~~lD~l~~~---- 141 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALESHQQLS-------------QKELDQLFNI---- 141 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHhhhcccC-------------HHHHHHHHhc----
Confidence 99999999999999999999999999999999999999887654322211110 1111111000
Q ss_pred CCccccccCCCcceehhHHHHHHHHHHHHhcCCCcchHHHHHHhcC--CCCCCHHHHHHHHH-------HHHHHHHHhhh
Q 009670 181 HENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMN--VEGLTRENVASHLQ-------KFRLSLKRLGN 251 (529)
Q Consensus 181 ~~~e~~~~~kk~r~vw~~~L~~kflaavn~lGldkavPd~IL~~mk--~~~LT~eEvAshLq-------kyr~~Lk~~~~ 251 (529)
...+.. .. .|. +|+++.+..+|.+.++ ...+|.||+|++++ ||..||...+.
T Consensus 142 ~~k~~~-~~---------~LP---------kGi~~~Tl~~i~~~~~~~~~~~Taeela~~~giSRvTaRRYLeyl~~~~~ 202 (224)
T COG4565 142 QSKEQP-PD---------DLP---------KGLDELTLQKVREALKEPDQELTAEELAQALGISRVTARRYLEYLVSNGI 202 (224)
T ss_pred cccccC-cc---------cCC---------CCcCHHHHHHHHHHHhCcCCccCHHHHHHHhCccHHHHHHHHHHHHhcCe
Confidence 000000 00 123 7999999999998887 37899999999998 77777776655
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.85 E-value=1e-20 Score=187.53 Aligned_cols=118 Identities=36% Similarity=0.568 Sum_probs=111.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--CCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~--~~~ipVIv 101 (529)
++|||||||+..+..+..+|+..||+|..+.++.+|++.+... ||+||+|++||++||+++|+.++. ...+||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 6899999999999999999999999999999999999998753 999999999999999999998883 46789999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+......++++||+||+.|||++.||.++++.++++..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999998754
No 4
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-20 Score=200.99 Aligned_cols=118 Identities=31% Similarity=0.515 Sum_probs=110.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE--CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~--~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ip 98 (529)
.++||||||++.+|++|+.++.+ +|++|+ +|.+|.+|++++++.. |||||+|++||+|||++|++.++ ..|++.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 36999999999999999999964 689866 8999999999999875 99999999999999999999886 578999
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|++||+.+.+++++|+++|+.|||+||++.++|.+++.++..+
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765
No 5
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.80 E-value=1e-18 Score=171.09 Aligned_cols=204 Identities=26% Similarity=0.294 Sum_probs=152.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
++|+||||++.++..++.+|+.. +++|+ .+.++.++++.++... ||+||+|+.||+++|+++++.++ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 57999999999999999999874 48866 6778999999977654 99999999999999999999886 67899999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccCCCcccCCCchhHHhhhhcccCCCCCCCCCCCCCCC
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEFEKSYRKRKDQDGEDEDEDGDDDG 180 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~~~~ 180 (529)
++|.+.+..++.+++++||++|+.|..+.++|..+++.+..+..+.+..... ........... ..
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~------~~~~~~~~~~~--~~------- 143 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIAR------KLAGLLPSSSA--EA------- 143 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHH------HHHhhcccccc--cc-------
Confidence 9999999999999999999999999999999999999999876544331100 00000000000 00
Q ss_pred CCccccccCCCcceehhHHHHHHHHHHHHhcCCCcchHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009670 181 HENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEAGMVA 260 (529)
Q Consensus 181 ~~~e~~~~~kk~r~vw~~~L~~kflaavn~lGldkavPd~IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~~~~~~~g~~ 260 (529)
... ..|..++.+.++ +-..|++..|||..|+....+.|.|....++|.++.
T Consensus 144 ~~~--------------~~LT~RE~eVL~---------------lla~G~snkeIA~~L~iS~~TVk~h~~~i~~KL~v~ 194 (211)
T COG2197 144 PLA--------------ELLTPRELEVLR---------------LLAEGLSNKEIAEELNLSEKTVKTHVSNILRKLGVR 194 (211)
T ss_pred ccc--------------CCCCHHHHHHHH---------------HHHCCCCHHHHHHHHCCCHhHHHHHHHHHHHHcCCC
Confidence 000 012333333332 445799999999999999999999998777777775
Q ss_pred ccCCCCchhhhhhhhhh
Q 009670 261 SVGSKDSSYLRIGALDG 277 (529)
Q Consensus 261 ~l~~sd~~~l~~aa~ia 277 (529)
. ......+|...+
T Consensus 195 ~----Rtea~~~a~~~~ 207 (211)
T COG2197 195 N----RTEAAIRALRLG 207 (211)
T ss_pred C----HHHHHHHHHHcC
Confidence 4 344444444433
No 6
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.79 E-value=1.3e-18 Score=186.59 Aligned_cols=119 Identities=34% Similarity=0.580 Sum_probs=112.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
.+|||||||+.++..+...|+..||+|..+.++.+|++++... .||+||+|+.||++||+++++.++ ..+++|||++
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 4799999999999999999999999999999999999999876 499999999999999999999775 5689999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++.+.+.+.+|++.||.|||.|||++++|..++.+++...+
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988644
No 7
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.78 E-value=1.9e-17 Score=161.88 Aligned_cols=122 Identities=25% Similarity=0.412 Sum_probs=109.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCC
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRE-CQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDL 97 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~-~gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~i 97 (529)
|..++||||||++.++..++.+|+. .++. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 4569999999999999999999986 4786 568899999999998654 999999999999999999998864 5678
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+||++|+..+...+.++++.||.+|+.||++.++|..+++++..++.
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876544
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.76 E-value=2e-17 Score=142.03 Aligned_cols=110 Identities=36% Similarity=0.610 Sum_probs=103.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEe
Q 009670 26 VLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLS 103 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy-~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlT 103 (529)
||||||++..+..++.+|+..|| +|..+.++.+|++.++... ||+||+|+.||+++|+++++.++ ..+.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999999 8999999999999998875 99999999999999999999886 45789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHH
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQ 137 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~ 137 (529)
...+.....+++++|+++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999999875
No 9
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.75 E-value=1.2e-17 Score=158.83 Aligned_cols=120 Identities=25% Similarity=0.391 Sum_probs=110.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
...-|.|||||..+++.+..+|+..||++..+.++.+.|...... .|.++|+|+.||+++|++|.+.+. ....+|||
T Consensus 3 ~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI 80 (202)
T COG4566 3 REPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI 80 (202)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcCCCCCEE
Confidence 345789999999999999999999999999999999999885433 589999999999999999998775 56789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++|+++|.....++++.||.|||.|||+.+.|..++++++++.
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 10
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-15 Score=133.87 Aligned_cols=120 Identities=37% Similarity=0.622 Sum_probs=104.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC-CCCcE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAI-TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLPV 99 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~-eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~-~~ipV 99 (529)
...+||||||++..+..++.+|...|+.+..+.++. +|++.++... .||+|++|+.||++||+++++.++.. +.+|+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 358999999999999999999999999999999995 9999998752 39999999999999999999988765 77889
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHH-HHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEE-LKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~ee-L~~~l~~vlr~ 142 (529)
|++|++.......++++.|+++|+.||+...+ |...+.+.+..
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 99999999887788899999999999976666 77777765543
No 11
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.67 E-value=3.5e-15 Score=144.41 Aligned_cols=203 Identities=17% Similarity=0.222 Sum_probs=149.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEecCCCC---CCHHHHHHHHh-cCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY-E-VTVTNRAITALKMLRENRNNFDLVISDVYMPD---MDGFKLLELVG-LEMD 96 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy-~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd---mdGleLL~~Ir-~~~~ 96 (529)
+++||||||++..+..++.+|+..++ . +..+.++.++++.+.... ||+||+|+.||+ .+|+++++.++ ..+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 48999999999999999999987554 4 557899999999987654 999999999999 59999999875 4678
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccCCCcccCCCchhHHhhhhcccCCCCCCCCCCC
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEFEKSYRKRKDQDGEDEDEDG 176 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~ 176 (529)
+|||++|...+.....++++.||++|+.||++.++|..+++.+..+....+... ........ . .
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~-------~~~~~~~~---~-~----- 144 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESV-------SRLLEKIS---A-G----- 144 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHH-------HHHHHHhc---c-C-----
Confidence 999999999999999999999999999999999999999999887654332110 00000000 0 0
Q ss_pred CCCCCCccccccCCCcceehhHHHHHHHHHHHHhcCCCcchHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Q 009670 177 DDDGHENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEA 256 (529)
Q Consensus 177 ~~~~~~~e~~~~~kk~r~vw~~~L~~kflaavn~lGldkavPd~IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~~~~~~ 256 (529)
..... .|..++.+ ||. +-..|+|..|||..|+-...+++.|...-++|
T Consensus 145 ----~~~~~-------------~Lt~rE~e--------------vl~-~~~~G~s~~eIA~~l~iS~~TV~~h~~~i~~K 192 (216)
T PRK10840 145 ----GYGDK-------------RLSPKESE--------------VLR-LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMK 192 (216)
T ss_pred ----CCccc-------------cCCHHHHH--------------HHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 00000 12222222 332 23468999999999998888888888766777
Q ss_pred hhhhccCCCCchhhhhhhhhhcC
Q 009670 257 GMVASVGSKDSSYLRIGALDGFG 279 (529)
Q Consensus 257 ~g~~~l~~sd~~~l~~aa~ial~ 279 (529)
.|+.. ...+..++....+.
T Consensus 193 l~v~~----~~~l~~~~~~~~~~ 211 (216)
T PRK10840 193 LGVEN----DIALLNYLSSVTLS 211 (216)
T ss_pred cCCCC----HHHHHHHHHHhcCC
Confidence 77653 55677777665554
No 12
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.66 E-value=9.3e-15 Score=144.06 Aligned_cols=119 Identities=20% Similarity=0.422 Sum_probs=104.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
++||||||++.++..++.+|+. .++.+. .+.++.++++.+......||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 7899999999999999999986 477655 77899999998864223599999999999999999999875 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
++|+..+.....++++.||.+|+.||++.++|..++..++.+
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~ 123 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876554
No 13
>PRK09483 response regulator; Provisional
Probab=99.66 E-value=4.8e-15 Score=141.05 Aligned_cols=120 Identities=24% Similarity=0.336 Sum_probs=108.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipV 99 (529)
.++||||||++..+..++.+|+. .++.++ .+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~i 78 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYTPDVKI 78 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeE
Confidence 36899999999999999999987 478876 789999999998865 499999999999999999999774 5678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|...+......++..||++|+.||++.++|..+++.++++..
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~ 123 (217)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR 123 (217)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999999999987644
No 14
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.66 E-value=3.8e-15 Score=142.81 Aligned_cols=118 Identities=29% Similarity=0.390 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
++||||||++..+..+...|+..||.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 6899999999999999999999999999999999999887654 49999999999999999999988877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999888753
No 15
>PLN03029 type-a response regulator protein; Provisional
Probab=99.65 E-value=2.6e-15 Score=147.84 Aligned_cols=121 Identities=32% Similarity=0.580 Sum_probs=108.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCC------------------CceEEEEecCCCCCCH
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRN------------------NFDLVISDVYMPDMDG 84 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~------------------~pDLVIlDi~MPdmdG 84 (529)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+..... .+||||+|+.||+++|
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 4899999999999999999999999999999999999999864321 3679999999999999
Q ss_pred HHHHHHHhcC---CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 85 FKLLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 85 leLL~~Ir~~---~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+++++.++.. .++|||++|+........++++.||++||.||++..+|...+.++++.+
T Consensus 88 ~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 88 YDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 9999988643 5789999999999999999999999999999999999988888776543
No 16
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.65 E-value=9.8e-15 Score=137.62 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIv 101 (529)
|+|+||||++..+..+...|+..++++. .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 6899999999999999999988899987 689999999998765 4999999999999999999998764 46789999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+++..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998654
No 17
>PRK11173 two-component response regulator; Provisional
Probab=99.64 E-value=5.3e-15 Score=143.90 Aligned_cols=118 Identities=23% Similarity=0.396 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
.+||||||++..+..+...|+..|+.+..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|+|++|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999998765 49999999999999999999988776789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+..+......+++.||++|+.||++.++|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988764
No 18
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.64 E-value=5.8e-15 Score=141.61 Aligned_cols=118 Identities=31% Similarity=0.432 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvl 102 (529)
|+||||||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 6899999999999999999999999999999999999988765 4999999999999999999998764 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.+....+++.||+||+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999988753
No 19
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.63 E-value=4.6e-15 Score=149.07 Aligned_cols=115 Identities=30% Similarity=0.489 Sum_probs=103.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
+||+|||||......|..+|.+.+..+..|....+|++.|.... |||||+|+.||+|+|++++++++ ..+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 68999999999999999999999977889999999999999875 99999999999999999999886 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|++. ++....+...+.|||.||++.+.|.+++.+..++
T Consensus 79 ssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 79 SSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred ecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 9998 4566677777899999999999999999988743
No 20
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.63 E-value=8.7e-15 Score=139.93 Aligned_cols=118 Identities=20% Similarity=0.409 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
++||||||++.....+...|+..||+|..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 6899999999999999999999999999999999999988765 49999999999999999999988766789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+..+.....++++.||+||+.||++.++|...+..++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999988763
No 21
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.63 E-value=1.1e-14 Score=140.10 Aligned_cols=117 Identities=27% Similarity=0.577 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvl 102 (529)
|+||||||++..+..+...|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 6899999999999999999998999999999999999988654 4999999999999999999998864 478999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|+..+.+...++++.||++|+.||++.++|..+++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988765
No 22
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.63 E-value=1.2e-14 Score=138.06 Aligned_cols=118 Identities=34% Similarity=0.513 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
|+|+||||++..+..+...|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 6899999999999999999999999998999999999988765 499999999999999999999776 4577999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887654
No 23
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.62 E-value=5.4e-15 Score=157.89 Aligned_cols=122 Identities=34% Similarity=0.520 Sum_probs=113.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCc
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ip 98 (529)
...+||||||+...+..++.+|...||+|..+.++.+|+..+.+.+ ||+||+|+.||++||+++++.++. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 4589999999999999999999999999999999999999998764 999999999999999999998763 45799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccC
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~ 145 (529)
||++++..+.....+|++.|++||+.||+...+|...+++.+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999998887653
No 24
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.61 E-value=2.1e-14 Score=137.02 Aligned_cols=117 Identities=26% Similarity=0.520 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
|+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 6899999999999999999998899999999999999988754 49999999999999999999988766789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+..+.+...++++.||++|+.||++.++|..+++.++++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988765
No 25
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.61 E-value=2.1e-14 Score=136.30 Aligned_cols=118 Identities=27% Similarity=0.382 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvl 102 (529)
|+||||||++..+..+...|+..++++..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 6899999999999999999998899999999999999988754 4999999999999999999998864 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.+....+++.||++|+.||++.++|..+++.++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 26
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.61 E-value=2.2e-14 Score=139.62 Aligned_cols=118 Identities=24% Similarity=0.397 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
++||||||++..+..+...|+..||++..+.++.++++.+... .||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999999999999999999999999999999998765 49999999999999999999988766678999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+..+.....++++.||+||+.||++..+|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9998888889999999999999999999999999888764
No 27
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.61 E-value=2.3e-14 Score=136.15 Aligned_cols=118 Identities=27% Similarity=0.466 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipVI 100 (529)
++||||||++.++..+...|+..++++..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCEE
Confidence 68999999999999999999988999999999999999987654 999999999999999999998864 3578999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++|+..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999987653
No 28
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.61 E-value=2.6e-14 Score=137.91 Aligned_cols=119 Identities=38% Similarity=0.589 Sum_probs=109.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
.++||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 48999999999999999999998899998899999999988765 4999999999999999999998876678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999887654
No 29
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.61 E-value=2.2e-14 Score=137.60 Aligned_cols=118 Identities=31% Similarity=0.494 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
.+||||||++..+..++..|+..++.+..+.++.++++.+.. .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 489999999999999999999889999999999999998753 49999999999999999999988755459999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+..+.....++++.||++|+.||++.++|..+++.++++..
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 119 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999887643
No 30
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.60 E-value=2.4e-14 Score=137.83 Aligned_cols=117 Identities=28% Similarity=0.444 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipVI 100 (529)
++||||||++..+..+...|+..|+++..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 6899999999999999999998899999999999999988754 49999999999999999999988643 678999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
++|+..+.....+++++||++|+.||++.++|..+++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998875
No 31
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.60 E-value=2.8e-14 Score=139.55 Aligned_cols=117 Identities=21% Similarity=0.404 Sum_probs=106.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEec
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSA 104 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa 104 (529)
+||||||++..+..+...|+..+|.+..+.++.++++.+... .||+||+|+.||+++|+++++.++....+|+|++|+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE--TVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 799999999999999999999999999999999999988765 499999999999999999999887667899999998
Q ss_pred C-CCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 105 Y-SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 105 ~-~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
. .+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5 46667789999999999999999999999999888763
No 32
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.59 E-value=1.1e-14 Score=133.95 Aligned_cols=112 Identities=24% Similarity=0.445 Sum_probs=104.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEe
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLS 103 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlT 103 (529)
..||||||..++..|.+.+++.||.|.++.+.++|+..++... |.-+++|+.|.+.+|+++++.++ ...+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999998765 99999999999999999999775 56789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHH
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~ 138 (529)
++.+...+.+|++.||++||.||-+.+++..++.+
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999988877653
No 33
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.59 E-value=4.4e-14 Score=134.69 Aligned_cols=118 Identities=34% Similarity=0.470 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvl 102 (529)
++||||||++..+..+...|+..+|.+..+.++.+++..+... .||+||+|+.||+.+|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 6899999999999999999998899998899999999988654 4999999999999999999998764 478999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+......+++.||++|+.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999988999999999999999999999999999887654
No 34
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.59 E-value=4.9e-14 Score=136.84 Aligned_cols=119 Identities=29% Similarity=0.494 Sum_probs=109.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIv 101 (529)
..+||||||++..+..+...|+..||++..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 47899999999999999999999999999999999999988765 4999999999999999999998864 46899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+++..+.+....+++.||++|+.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999988763
No 35
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.58 E-value=1.6e-13 Score=129.10 Aligned_cols=119 Identities=21% Similarity=0.327 Sum_probs=106.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipV 99 (529)
..+||||||++..+..++..|+.. ++.+. .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 378999999999999999999875 57775 678999999988755 4999999999999999999998764 577999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|++|+..+.....++++.|+++|+.||++.++|..+++.++.+.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887764
No 36
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.58 E-value=5.6e-14 Score=134.92 Aligned_cols=117 Identities=26% Similarity=0.376 Sum_probs=107.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhc-CCCCcEEE
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGL-EMDLPVVM 101 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLL~~Ir~-~~~ipVIv 101 (529)
+||||||++.++..+...|+..+|++..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++. .+.+|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999988999998999999999987654 999999999997 589999998864 46799999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+..+......++++||++|+.||++.++|..+++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988764
No 37
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.57 E-value=3.9e-14 Score=163.83 Aligned_cols=120 Identities=30% Similarity=0.441 Sum_probs=110.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-----CC
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-----EM 95 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-----~~ 95 (529)
|.+++||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~ 765 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDP 765 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCC
Confidence 44689999999999999999999999999999999999999997654 999999999999999999998864 26
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
.+|||++|+..+.+...++++.|+++||.||++.++|..++.++++.
T Consensus 766 ~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 766 DCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999887653
No 38
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.55 E-value=5.5e-14 Score=162.34 Aligned_cols=119 Identities=27% Similarity=0.434 Sum_probs=110.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCc
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ip 98 (529)
..++||||||++..+..++.+|+..|+.|..+.++.+|++.+.... ||+||+|+.||++||+++++.++. .+.+|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCC
Confidence 3589999999999999999999999999999999999999998654 999999999999999999998874 45799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
||++|+....+...++++.|+++||.||++.++|..++.+++..
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999888654
No 39
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.55 E-value=6.6e-14 Score=163.65 Aligned_cols=120 Identities=30% Similarity=0.471 Sum_probs=111.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVI 100 (529)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.++. .+.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999998754 999999999999999999998864 5679999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++|+....+...++++.|+++||.||++.++|..++.++.++.
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999876643
No 40
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.55 E-value=3.7e-14 Score=162.84 Aligned_cols=122 Identities=29% Similarity=0.467 Sum_probs=111.5
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC--C
Q 009670 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE--M 95 (529)
Q Consensus 18 ~~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~--~ 95 (529)
+.+..+.|||||||++..+++.+.+|++.|.+++.+.++.||++.+.. ...||+||+|++||.|||++..+.||.. .
T Consensus 661 ~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~ 739 (786)
T KOG0519|consen 661 SKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERW 739 (786)
T ss_pred cccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcC
Confidence 455668999999999999999999999999999999999999999972 2369999999999999999999988644 4
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
.+|||.+|+..+.+...+|++.|.+.||.|||+.+.|..+++.++
T Consensus 740 ~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 740 HLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999888775
No 41
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.54 E-value=2.2e-13 Score=129.03 Aligned_cols=116 Identities=32% Similarity=0.563 Sum_probs=106.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEec
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSA 104 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa 104 (529)
||||||++..+..+...|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|||++|+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 68999999999999999998899998999999999988765 499999999999999999999886 457899999999
Q ss_pred CCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 105 YSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 105 ~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999887654
No 42
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.52 E-value=2.4e-13 Score=132.50 Aligned_cols=115 Identities=28% Similarity=0.455 Sum_probs=98.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQ-YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~g-y~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
++|+||||++..+..++.+|+..+ +.+ ..+.++.++++.+... .||+||+|+.||+++|+++++.++.....+||+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 799999999999999999998866 343 4678999999988765 499999999999999999999886444456888
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|++. +...++++.||.+||.||++.++|..++.++.+.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88876 4677899999999999999999999999988654
No 43
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.52 E-value=1.3e-13 Score=159.90 Aligned_cols=120 Identities=23% Similarity=0.309 Sum_probs=110.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
+++||||||++.++..++.+|+..||+|..+.++.+|++.+.... .||+||+|+.||++||+++++.++ ..+.+|||+
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~-~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~ 759 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSE-PFAAALVDFDLPDYDGITLARQLAQQYPSLVLIG 759 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 579999999999999999999999999999999999999886432 489999999999999999999876 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+........++++.|+++||.||++.++|..++.++++..
T Consensus 760 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999988653
No 44
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.52 E-value=5.9e-14 Score=148.09 Aligned_cols=117 Identities=29% Similarity=0.460 Sum_probs=105.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipV 99 (529)
..+||||||++..+..+...|.+ .+.+..+.++.+|+..+.+. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 155 ~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~--~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~i 231 (457)
T PRK09581 155 DGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET--NYDLVIVSANFENYDPLRLCSQLRSKERTRYVPI 231 (457)
T ss_pred CceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC--CCCEEEecCCCCCchHhHHHHHHHhccccCCCcE
Confidence 57899999999999999999976 46777899999999987655 4999999999999999999998863 378999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|++|++.+.+++.++++.||+||+.||++.++|...+....++
T Consensus 232 i~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 232 LLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776553
No 45
>PRK14084 two-component response regulator; Provisional
Probab=99.52 E-value=3.1e-13 Score=132.77 Aligned_cols=116 Identities=23% Similarity=0.397 Sum_probs=100.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQ-YE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~g-y~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVI 100 (529)
|+|+||||++..+..++.+|+..+ +. +..+.++.+++..+.+. .||+||+|+.||+++|+++++.++. .+..+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 689999999999999999998754 43 66789999999998765 4999999999999999999998864 4556788
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++|++.+ ...++++.||.+||.||++.++|..++.++.+..
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 8888754 5678999999999999999999999999887653
No 46
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.52 E-value=3.4e-13 Score=126.36 Aligned_cols=116 Identities=25% Similarity=0.327 Sum_probs=103.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLREC-QYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~-gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
++||||||++..+..++..|+.. ++. +..+.++.++++.+... .||+||+|+.||+++|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 68999999999999999999753 666 45789999999998755 499999999999999999999875 3679999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++...+.+....+++.||++|+.||++.++|..+++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998753
No 47
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.52 E-value=2e-13 Score=133.63 Aligned_cols=189 Identities=13% Similarity=0.100 Sum_probs=135.8
Q ss_pred HHHHHHHHHh---CCCeEEEECCHHHHHHHHHhcCCCceEEE---EecCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCH
Q 009670 36 LKILEKFLRE---CQYEVTVTNRAITALKMLRENRNNFDLVI---SDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDT 108 (529)
Q Consensus 36 ~~~L~~~Le~---~gy~V~~a~sa~eALe~L~e~~~~pDLVI---lDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa~~d~ 108 (529)
+..++.+|+. .+|.+..+.+++++++.++.. .||+|| +|+.||+++|+++++.++ ..+.+|||++|++.+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 5678888865 355566889999999988754 489998 688999999999999774 6789999999999877
Q ss_pred HHHHHHH-hcCCcEeEeCCCCHHHHHHHHHHHHHhccCCCcccCCCchhHHhhhhcccCCCCCCCCCCCCCCCCCccccc
Q 009670 109 KLVMKGI-NHGACDYLLKPVRMEELKNTWQHVIRRKKVDPKDQNRSPHEFEKSYRKRKDQDGEDEDEDGDDDGHENENST 187 (529)
Q Consensus 109 e~v~~al-~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~~~~~~~e~~~ 187 (529)
....+++ ++||.+|+.||++.++|..+|+.++++........ . .. ... . . . .
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~-------~---~~---~~~-~---------~-~-~-- 133 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRL-------N---NQ---WYI-N---------Q-S-R-- 133 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHH-------H---HH---hhc-c---------C-c-C--
Confidence 7666666 79999999999999999999999988754332100 0 00 000 0 0 0 0
Q ss_pred cCCCcceehhHHHHHHHHHHHHhcCCCcchHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCc
Q 009670 188 TQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEAGMVASVGSKDS 267 (529)
Q Consensus 188 ~~kk~r~vw~~~L~~kflaavn~lGldkavPd~IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~~~~~~~g~~~l~~sd~ 267 (529)
.|..++.+ ||+ +-..|+|..|||..|+-...+.+.|...-++|.|+.. ..
T Consensus 134 -----------~LT~RE~e--------------VL~-ll~~G~snkeIA~~L~iS~~TV~~h~~~I~~KLgv~n----~~ 183 (207)
T PRK11475 134 -----------MLSPTERE--------------ILR-FMSRGYSMPQIAEQLERNIKTIRAHKFNVMSKLGVSS----DA 183 (207)
T ss_pred -----------CCCHHHHH--------------HHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCCC----HH
Confidence 12222222 232 2345899999999999888888888877777777755 55
Q ss_pred hhhhhhh-hhhcCCCCc
Q 009670 268 SYLRIGA-LDGFGGSHS 283 (529)
Q Consensus 268 ~~l~~aa-~ial~hhe~ 283 (529)
.+.++|. ..++.|-|.
T Consensus 184 eLv~~a~~~~~~~~~~~ 200 (207)
T PRK11475 184 GLLDAADILLCLRHCEA 200 (207)
T ss_pred HHHHHHHHHHhCcccCc
Confidence 6776664 566776663
No 48
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.51 E-value=3.3e-13 Score=134.35 Aligned_cols=118 Identities=29% Similarity=0.528 Sum_probs=104.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC-C--CC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-M--DL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~-~--~i 97 (529)
.++||||||++..+..+...|+. .++.++ .+.++.++++.+.... ||+||+|+.||+++|+++++.++.. . .+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 47999999999999999999986 456655 7899999999998654 9999999999999999999987642 3 37
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|||++|+..+.....++++.|+++|+.||++.++|..++++++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999988754
No 49
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.50 E-value=2.6e-13 Score=145.11 Aligned_cols=119 Identities=35% Similarity=0.631 Sum_probs=109.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
..++||||||++..+..++..|+..||.|..+.++.+++..+... .||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 358999999999999999999999999999999999999998764 499999999999999999999775 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
++|++.+.+...++++.||.+|+.||++.++|..++.+++++
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764
No 50
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.50 E-value=9.2e-13 Score=127.07 Aligned_cols=118 Identities=27% Similarity=0.450 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
.+||||||++.....+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999999999999998999998999999999988764 49999999999999999999988766789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+..+......+++.||++|+.||++.++|..+++.++++.
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 9998888899999999999999999999999998887653
No 51
>PRK15115 response regulator GlrR; Provisional
Probab=99.49 E-value=3.7e-13 Score=144.48 Aligned_cols=118 Identities=30% Similarity=0.480 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
..+||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 38999999999999999999999999999999999999998765 499999999999999999998775 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|+..+.....++++.||.+|+.||++.++|...+..+++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 52
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.49 E-value=5.4e-13 Score=143.42 Aligned_cols=119 Identities=29% Similarity=0.520 Sum_probs=108.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
...+||||||++..+..+...|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI 80 (457)
T PRK11361 3 AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRTPVI 80 (457)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 356899999999999999999999999999999999999998765 499999999999999999999775 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
++|+..+.+...++++.|+.||+.||++.++|...++.++..
T Consensus 81 ~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999988877653
No 53
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.48 E-value=6.2e-13 Score=143.80 Aligned_cols=117 Identities=31% Similarity=0.435 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
.+||||||++..+..++..|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 68999999999999999999999999999999999999997654 99999999999999999999875 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|+..+.+...++++.|+.+|+.||++.++|...+.+++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888754
No 54
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.48 E-value=1.4e-12 Score=123.67 Aligned_cols=118 Identities=34% Similarity=0.541 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
|+|+|+||++.....++..|+..++.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999998899988899999999888654 499999999999999999999775 4567999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|...+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887754
No 55
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.47 E-value=4.9e-13 Score=155.66 Aligned_cols=118 Identities=26% Similarity=0.360 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC-CC---Cc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MD---LP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~-~~---ip 98 (529)
+.+||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +. +|
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCCe
Confidence 45899999999999999999999999999999999999999864 49999999999999999999988643 33 89
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
||++|+....+...++++.|+++||.||++.++|..++.+++..
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 56
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.46 E-value=8.3e-13 Score=137.35 Aligned_cols=116 Identities=23% Similarity=0.357 Sum_probs=98.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLR-ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le-~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
||||||||++..+..++.+|+ ..++++. .+.++.+|++.+... .||+|++|+.||+++|+++++.++....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~--~pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ--PPDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc--CCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 689999999999999999995 5688876 789999999999865 499999999999999999999887666689999
Q ss_pred EecCCC--HHHHHHHHhcCCcEeEeCCC---------CHHHHHHHHHHHHH
Q 009670 102 LSAYSD--TKLVMKGINHGACDYLLKPV---------RMEELKNTWQHVIR 141 (529)
Q Consensus 102 lTa~~d--~e~v~~al~~GA~DYL~KP~---------~~eeL~~~l~~vlr 141 (529)
+++..+ .....++++.|+.+|+.||+ ..++|...++.+.+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 998753 56677899999999999999 45556666665543
No 57
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.46 E-value=8.9e-13 Score=129.79 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=97.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH-HHHh-cCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL-ELVG-LEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL-~~Ir-~~~~ipV 99 (529)
..+|++|||+|.....++.+|+. ++.+ ..+.++.++++.+. .|||||+|+.||+++|++++ +.++ ..+.++|
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~v 84 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcE
Confidence 35699999999999999999984 4554 46788888888642 38999999999999999997 5554 5688999
Q ss_pred EEEecCCCHHHHHHHHh--cCCcEeEeCCCCHHHHHHHHHHHHHhccCC
Q 009670 100 VMLSAYSDTKLVMKGIN--HGACDYLLKPVRMEELKNTWQHVIRRKKVD 146 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~--~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~ 146 (529)
|++|+..+ ....++. .||.+|+.|+.+.++|.++|+.+.++..+.
T Consensus 85 vvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~ 131 (216)
T PRK10100 85 LLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYF 131 (216)
T ss_pred EEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCccc
Confidence 99999977 3445555 599999999999999999999998876544
No 58
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.46 E-value=7.3e-13 Score=158.02 Aligned_cols=120 Identities=29% Similarity=0.468 Sum_probs=110.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcE
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipV 99 (529)
+..++||||||++..+..++.+|+..||++..+.++.+|++.+... .|||||+|+.||+++|+++++.++ ..+.+||
T Consensus 956 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pi 1033 (1197)
T PRK09959 956 PEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQNSSLPI 1033 (1197)
T ss_pred ccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3467999999999999999999999999999999999999999765 499999999999999999999886 4578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|++|+..+.....++++.|+++||.||++.++|..+++++...
T Consensus 1034 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1034 WGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999887643
No 59
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.46 E-value=8.5e-13 Score=141.69 Aligned_cols=113 Identities=25% Similarity=0.380 Sum_probs=103.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-----CCHHHHHHHHh-cCCCCcE
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLL~~Ir-~~~~ipV 99 (529)
||||||++..+..+...| .+|+|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999888 689999999999999999865 4999999999996 89999998775 5678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|++|+..+.+...++++.||+||+.||++.++|..++++++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999887654
No 60
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.46 E-value=1.9e-12 Score=126.41 Aligned_cols=118 Identities=8% Similarity=-0.009 Sum_probs=97.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeE-EEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCHHHHHHHHh-cCCCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVY--MPDMDGFKLLELVG-LEMDL 97 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~g--y~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~--MPdmdGleLL~~Ir-~~~~i 97 (529)
|.|+||||++.++..++.+|+..+ +++ ..+.++.++++.++.. .|||||+|+. |++.+|+++++.++ ..+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 579999999999999999998654 344 4779999999988654 4999999965 88889999999775 57889
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcE-eEeCCCCHHHHHHHHHHHHHhcc
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACD-YLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~D-YL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+||++|+..+..... ++..|+.. |+.|+.+.++|..+++.+..+..
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~ 125 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKET 125 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCc
Confidence 999999998876654 55556554 89999999999999999987644
No 61
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.46 E-value=7.4e-13 Score=151.43 Aligned_cols=117 Identities=24% Similarity=0.344 Sum_probs=104.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CC-Cc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MD-LP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~-ip 98 (529)
+++||||||++..+..++.+|+..||.+..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +. +|
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 58999999999999999999999999999999999999999754 49999999999999999999988643 34 48
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
||++|+.... ...++++.|+++||.||++.++|..++++++..
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 9999987654 467889999999999999999999999988754
No 62
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.45 E-value=9.5e-12 Score=115.71 Aligned_cols=119 Identities=21% Similarity=0.364 Sum_probs=104.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipV 99 (529)
.++||||||++..+..+...|+.. ++.++ .+.++.++++.+... .||+||+|+.|++++|+++++.++ ..+.+|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~i 80 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRWPAMNI 80 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 478999999999999999999764 56654 788999999887755 499999999999999999998775 3577899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|++|+..+......+++.|+.+|+.||++..+|...++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 81 LVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred EEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999887653
No 63
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.45 E-value=8.1e-12 Score=117.27 Aligned_cols=119 Identities=22% Similarity=0.291 Sum_probs=105.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipV 99 (529)
.++||||||++..+..+...|+. .++.+. .+.++.+++..+... .||+||+|+.||+++|+++++.++ ..+.+|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 37899999999999999999975 577765 688999999988654 499999999999999999998775 4467899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+++...+......+++.|+++|+.||++.++|..+++.++++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 127 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGS 127 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 99999988888999999999999999999999999999887653
No 64
>PRK13435 response regulator; Provisional
Probab=99.44 E-value=2.5e-12 Score=116.07 Aligned_cols=117 Identities=20% Similarity=0.263 Sum_probs=101.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLL~~Ir~~~~ipVI 100 (529)
.++|||+|+++.....+...|+..++.+. .+.++.++++.+.+. .||+||+|+.++ +.+|+++++.++..+.+|+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 47999999999999999999998899977 789999999988654 499999999998 58999999988766789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+++...+ ...++..|+.+|+.||++.++|...++++..++.
T Consensus 83 ~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 83 FMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 9997654 2467789999999999999999999998876543
No 65
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.44 E-value=2.4e-12 Score=119.22 Aligned_cols=119 Identities=29% Similarity=0.423 Sum_probs=107.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
...+||||||++.....+...|+..+|.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 457899999999999999999998899999999999999888654 499999999999999999999875 45678999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
++|+..+......+++.|+.+|+.||+..+++...+..++..
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887764
No 66
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.44 E-value=1.6e-12 Score=140.07 Aligned_cols=115 Identities=34% Similarity=0.512 Sum_probs=105.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEec
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSA 104 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa 104 (529)
||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++ ..+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999998765 499999999999999999999775 457789999999
Q ss_pred CCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 105 YSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 105 ~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+.+.....++++.|+.+|+.||++.++|..++++++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654
No 67
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.42 E-value=1.2e-11 Score=104.40 Aligned_cols=118 Identities=30% Similarity=0.554 Sum_probs=104.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ip 98 (529)
.++|+++|+++.....++..|+..+++ +..+.++.+++..+... .+|++++|..+++++|+++++.++.. +.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 489999999999999999999988885 66788999999988654 49999999999999999999987643 5689
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|+++...+......+++.|+.+|+.||++.+++...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999888764
No 68
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.42 E-value=8.8e-12 Score=117.37 Aligned_cols=118 Identities=20% Similarity=0.341 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
.+||||||++..+..+..+|+.. ++.++ .+.++.+++..+... .||+||+|+.+|+++|+++++.++ ..+.+|+|
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~vi 84 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGRIV 84 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEE
Confidence 78999999999999999999763 56654 688999999988765 499999999999999999998775 45678999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+++...+......+++.|+.+|+.||++.++|...++.++++.
T Consensus 85 ~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 85 VFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999988653
No 69
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.40 E-value=6.1e-12 Score=132.82 Aligned_cols=117 Identities=31% Similarity=0.482 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipVI 100 (529)
.+||||||++..+..+...|+..+|.+..+.++.++++.+... .||+||+|+.||+.+|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 4899999999999999999988899999999999999999765 49999999999999999999988653 468999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
++|+..+.....++++.||.+|+.||++.++|..++..+++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887664
No 70
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.38 E-value=4e-12 Score=142.95 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=104.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
+.++||||||++..+..+..+|...+|.|..+.++.++++.+... .|||||+|+.||+++|+++++.++ ..+.+|||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI 83 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTTAVPPVV 83 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEE
Confidence 358999999999999999999988899999999999999988754 499999999999999999999886 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCH--HHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRM--EELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~--eeL~~~l~~vlr~ 142 (529)
++|+..+.+...++++.|+.+|+.||... ..+..+++.++..
T Consensus 84 ~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 84 VVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999754 3566666666543
No 71
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.38 E-value=9.3e-12 Score=130.28 Aligned_cols=104 Identities=29% Similarity=0.462 Sum_probs=90.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.++||||||++..+..++.+|+.. ++.++ .+.++.++++.+.... ||+|++|+.||+++|+++++.++....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 379999999999999999999875 88877 8899999999987654 9999999999999999999988654449999
Q ss_pred EEecCC--CHHHHHHHHhcCCcEeEeCCCC
Q 009670 101 MLSAYS--DTKLVMKGINHGACDYLLKPVR 128 (529)
Q Consensus 101 vlTa~~--d~e~v~~al~~GA~DYL~KP~~ 128 (529)
++|+.. +.....++++.|++||+.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999753 3466778999999999999994
No 72
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.35 E-value=6.2e-12 Score=131.05 Aligned_cols=104 Identities=29% Similarity=0.471 Sum_probs=92.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQ-YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~g-y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.||||||||....|..++++|...+ .+++ ++.++.+|++.+.+.. ||+|.+|+.||.|||++.++.+-....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 3899999999999999999999876 5644 8899999999998875 9999999999999999999987666889999
Q ss_pred EEecCCC--HHHHHHHHhcCCcEeEeCCCC
Q 009670 101 MLSAYSD--TKLVMKGINHGACDYLLKPVR 128 (529)
Q Consensus 101 vlTa~~d--~e~v~~al~~GA~DYL~KP~~ 128 (529)
|+++..+ .+...+++++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9987543 567888999999999999963
No 73
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.28 E-value=2.8e-11 Score=116.03 Aligned_cols=120 Identities=28% Similarity=0.380 Sum_probs=104.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
..+||++||++..+..+...|...||.++ .+.++.++.+.....+ ||+||+|+.||..|-.+-+.+.......|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 47999999999999999999999999866 6788888888887765 99999999999998444444555667789999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|++.+++.+.++++.||..|++||++...|+.++.-+..+..
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~ 125 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFE 125 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988876643
No 74
>PRK09191 two-component response regulator; Provisional
Probab=99.27 E-value=1e-10 Score=115.64 Aligned_cols=116 Identities=19% Similarity=0.348 Sum_probs=98.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLL~~Ir~~~~ipVI 100 (529)
..+|||+||++..+..++..|+..++.+. .+.++.++++.+... .||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 36899999999999999999988889887 688999999998764 4999999999995 8999999877543389999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
++|+..+... .+...|+.+|+.||++.++|...+++++..
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9999876543 334567889999999999999999887643
No 75
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.24 E-value=1.4e-10 Score=134.18 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=107.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
+.+||||||++..+..+...|+..||+++.+.++.++++.+.+....||+||+ .||+++|+++++.++ ..+.+|||+
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIv 774 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIIL 774 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 56899999999999999999999999999999999999999765435899999 699999999999775 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+..+.....+++..| ++||.||++..+|..+++++++..
T Consensus 775 ls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 775 GGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 99999989999999999 999999999999999999988654
No 76
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.24 E-value=8.9e-12 Score=127.66 Aligned_cols=65 Identities=51% Similarity=0.834 Sum_probs=60.7
Q ss_pred ccCCCcceehhHHHHHHHHHHHHhcCCCcchHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 009670 187 TTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGN 251 (529)
Q Consensus 187 ~~~kk~r~vw~~~L~~kflaavn~lGldkavPd~IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~ 251 (529)
...||+|+.|+.+||.+|+.++++||.++++|++||++|++++||+++|++||||||.++++...
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~ 295 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA 295 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence 35788999999999999999999999999999999999999999999999999999998876554
No 77
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.18 E-value=4.8e-10 Score=89.96 Aligned_cols=111 Identities=35% Similarity=0.558 Sum_probs=98.2
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEEecC
Q 009670 27 LAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAY 105 (529)
Q Consensus 27 LIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvlTa~ 105 (529)
+++|+++..+..+...+...++.+..+.+..+++..+... .+|++|+|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 4789999999999999988899998889999999988765 4999999999999999999987754 567899999988
Q ss_pred CCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 106 SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 106 ~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
........+++.|+.+|+.||++..+|...++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 8888888999999999999999999998887653
No 78
>PRK13557 histidine kinase; Provisional
Probab=99.15 E-value=6e-10 Score=120.26 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=106.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhc-CCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLL~~Ir~-~~~ipVI 100 (529)
+.+||||||++..+..+..+|+..+|.+..+.++.++++.+... ..||+||+|..|++ ++|+++++.++. .+.+|||
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 56899999999999999999998999999999999999988643 24999999999997 999999998764 5778999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+++...+......++..|+.+|+.||++.++|..+++.++..
T Consensus 494 ~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 494 LTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 999999888888899999999999999999999999887653
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.09 E-value=7.1e-10 Score=114.23 Aligned_cols=89 Identities=28% Similarity=0.443 Sum_probs=79.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCC-CH
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV-RM 129 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~-~~ 129 (529)
.+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|||++|+..+.+...++++.||+||+.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 467889999998764 4999999999999999999998864 4679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHh
Q 009670 130 EELKNTWQHVIRR 142 (529)
Q Consensus 130 eeL~~~l~~vlr~ 142 (529)
++|..++.++++.
T Consensus 80 ~~L~~~i~~~l~~ 92 (303)
T PRK10693 80 NRLREMVFACLYP 92 (303)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988887654
No 80
>PRK15029 arginine decarboxylase; Provisional
Probab=99.05 E-value=1.4e-09 Score=124.09 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=91.9
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH----HHHHHH
Q 009670 24 MRVLAVDDDQT--------CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF----KLLELV 91 (529)
Q Consensus 24 mrVLIVDDd~~--------v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGl----eLL~~I 91 (529)
|||||||||.. .++.++..|+..||+|..+.++.+|++.++.. ..||+||+|+.||+++|+ ++++.+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 68999999995 69999999999999999999999999999763 249999999999999997 899888
Q ss_pred hc-CCCCcEEEEecCCC--HHHHHHHHhcCCcEeEeCCCCHHHH-HHHHHHHHHhc
Q 009670 92 GL-EMDLPVVMLSAYSD--TKLVMKGINHGACDYLLKPVRMEEL-KNTWQHVIRRK 143 (529)
Q Consensus 92 r~-~~~ipVIvlTa~~d--~e~v~~al~~GA~DYL~KP~~~eeL-~~~l~~vlr~~ 143 (529)
+. ..++|||++|+..+ ...-...++ -+..|+-+--+..++ ...+....+++
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y 134 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHHHHHHHHHHHHHH
Confidence 74 56899999999986 333333333 367788877544443 34455554443
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.02 E-value=1.6e-09 Score=108.74 Aligned_cols=116 Identities=29% Similarity=0.441 Sum_probs=98.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipV 99 (529)
.++|+++||++..+..++.++.. ...++. .+.++.++++.++.. .+|++++|+.||+++|+++.+.++. .+..+|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~I 78 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAI 78 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeE
Confidence 37899999999999999999974 233433 678899999999876 5999999999999999999998875 556679
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|++|++. +++..+++..|.||+.||+..++|..++....+.
T Consensus 79 vfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 79 VFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 9999987 4566777999999999999999999999876553
No 82
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.78 E-value=1.3e-08 Score=80.07 Aligned_cols=54 Identities=67% Similarity=1.064 Sum_probs=51.1
Q ss_pred CcceehhHHHHHHHHHHHHhcCC-CcchHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 009670 191 KPRVVWTTELHTKFIGAVNLLGL-DKAVPKKILDLMNVEGLTRENVASHLQKFRL 244 (529)
Q Consensus 191 k~r~vw~~~L~~kflaavn~lGl-dkavPd~IL~~mk~~~LT~eEvAshLqkyr~ 244 (529)
++|..|+.++|.+|+.++..+|. +.++|+.|++.|.+.+||.++|++|+|||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 35889999999999999999998 8899999999999999999999999999986
No 83
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=98.68 E-value=1.5e-08 Score=106.52 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=67.3
Q ss_pred ceehhHHHHHHHHHHHHhcCCCc------------------chHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhh
Q 009670 193 RVVWTTELHTKFIGAVNLLGLDK------------------AVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTL 254 (529)
Q Consensus 193 r~vw~~~L~~kflaavn~lGldk------------------avPd~IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~~~~ 254 (529)
.|.++++....+++.. +|+++ ++|+.|| .|+++||.+| |.. |+.|+.
T Consensus 151 ~Hs~~va~~a~~ia~~--lgl~~~~i~~l~~aalLHDIGKi~ip~~IL--~K~g~Lt~eE-------~~~-ik~H~~--- 215 (344)
T COG2206 151 GHSVRVAELAEAIAKK--LGLSEEKIEELALAGLLHDIGKIGIPDSIL--NKPGKLTEEE-------FEI-IKKHPI--- 215 (344)
T ss_pred HHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhcccccCCHHHh--CCCCCCCHHH-------HHH-HHhchH---
Confidence 6778888888777666 88876 9999999 9999999999 666 999999
Q ss_pred hhhhhhccCCCCchhhhhhhhhhcCCCCccCCCCc
Q 009670 255 EAGMVASVGSKDSSYLRIGALDGFGGSHSVNSPGR 289 (529)
Q Consensus 255 ~~~g~~~l~~sd~~~l~~aa~ial~hhe~~dGsG~ 289 (529)
.|+.+|..-. .+......++++|||||||+|-
T Consensus 216 --~g~~iL~~~~-~~~~~~~~~~l~HHEr~DGtGY 247 (344)
T COG2206 216 --YGYDILKDLP-EFLESVRAVALRHHERWDGTGY 247 (344)
T ss_pred --HHHHHHHhcc-cccHHHHHHHHHhhhccCCCCC
Confidence 8888876544 5778888999999999999995
No 84
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.20 E-value=1.6e-05 Score=92.35 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=94.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-HHhc--CCCC
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-LVGL--EMDL 97 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~-~Ir~--~~~i 97 (529)
..+.+|+|+||++..+..+..+|+..|+.+..+.+..+ +... .||++|+|+.||++++...+. .++. ....
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~~--~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPEA--HYDILLLGLPVTFREPLTMLHERLAKAKSMTD 607 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hccC--CCCEEEecccCCCCCCHHHHHHHHHhhhhcCC
Confidence 34789999999999999999999999999998888777 3322 599999999999887776554 4432 2345
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
++|+++...+......+.+.|+.+|+.||+...++...+....
T Consensus 608 ~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 608 FLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred cEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 6888888888888899999999999999999999998887654
No 85
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.04 E-value=4.6e-06 Score=89.93 Aligned_cols=93 Identities=34% Similarity=0.512 Sum_probs=82.4
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCC
Q 009670 48 YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127 (529)
Q Consensus 48 y~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~ 127 (529)
++|.++..+.+|+..+.... ||.+++|+.||+++|+++++.++..+.. ++++|...+.....+++++|+.++|.||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 46777899999999987664 9999999999999999999999877665 99999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 009670 128 RMEELKNTWQHVIRRK 143 (529)
Q Consensus 128 ~~eeL~~~l~~vlr~~ 143 (529)
....+......+.+.+
T Consensus 90 ~~~~~~~r~~~l~~~k 105 (435)
T COG3706 90 NDSQLFLRAKSLVRLK 105 (435)
T ss_pred ChHHHHHhhhhhccch
Confidence 9988888887776543
No 86
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.48 E-value=0.00089 Score=46.17 Aligned_cols=55 Identities=38% Similarity=0.619 Sum_probs=48.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMP 80 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MP 80 (529)
++|+++++++.....+...+...++++..+.+..++...+... .+|++++|..++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 5799999999999999999988899988889999999888654 499999998654
No 87
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=97.45 E-value=7.3e-05 Score=59.83 Aligned_cols=48 Identities=10% Similarity=-0.086 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCchhhhhhhhhhcCCCCccCCCCc
Q 009670 228 EGLTRENVASHLQKFRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGALDGFGGSHSVNSPGR 289 (529)
Q Consensus 228 ~~LT~eEvAshLqkyr~~Lk~~~~~~~~~~g~~~l~~sd~~~l~~aa~ial~hhe~~dGsG~ 289 (529)
+.||.+| ++. +++|.. .+..+|..-. .+-...+.+.++|||+|||+|-
T Consensus 1 G~Lt~~e-------~~~-~~~Hp~-----~~~~~l~~~~-~l~~~v~~~i~~hhEr~DGsGy 48 (64)
T PF13487_consen 1 GKLTPEE-------REI-IQQHPE-----YGAELLSQIP-RLSPEVADIILQHHERWDGSGY 48 (64)
T ss_dssp -GS-HHH-------HHH-HHHHHH-----HHHHHHTT-T-TS-HHHHHHHHHTT--TBS-S-
T ss_pred CCCCHHH-------HHH-HHHHHH-----HHHHHHHcch-hhHHHHHHHHHHhccCCcCCCC
Confidence 4689999 444 788888 6666664432 2443677899999999999995
No 88
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.33 E-value=0.0018 Score=57.28 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=73.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEE-EEecCCCCCCHHHHHH-HHhcCCCCcEEEE
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLV-ISDVYMPDMDGFKLLE-LVGLEMDLPVVML 102 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLV-IlDi~MPdmdGleLL~-~Ir~~~~ipVIvl 102 (529)
||||||||..-+..++.+|+=.|+++..+....- ....... ..+.+ |.....+ ...++++ ..+..+.+||+++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~--~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS--PWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc--CCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 7999999999999999999888998887765433 2233222 23433 3333333 3455666 4467899999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
......... ..+.+-|..|++..+|...+++.
T Consensus 76 g~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 877765111 12667789999999999999875
No 89
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.35 E-value=0.028 Score=50.10 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=76.8
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHh-cCCCCcEEEEecCCCHHHHH
Q 009670 36 LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVG-LEMDLPVVMLSAYSDTKLVM 112 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLL~~Ir-~~~~ipVIvlTa~~d~e~v~ 112 (529)
...|...|++.|++|+.+.+.++++..++... .++.|++|+. ++ ....++++.++ .+..+||.+++.....+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 35677778878999999999999999998764 7899999986 21 23456777664 67899999999876544444
Q ss_pred HHHhcCCcEeEeCCC-CHHHHHHHHHHHHHhc
Q 009670 113 KGINHGACDYLLKPV-RMEELKNTWQHVIRRK 143 (529)
Q Consensus 113 ~al~~GA~DYL~KP~-~~eeL~~~l~~vlr~~ 143 (529)
..+--.+++|+-..- +.+.+...+.++.++|
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~Y 115 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAARRY 115 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHHhC
Confidence 444455788888874 4555556787776653
No 90
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.31 E-value=0.094 Score=47.05 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=77.6
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCC--HHHHHHHHhcC-
Q 009670 25 RVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDMD--GFKLLELVGLE- 94 (529)
Q Consensus 25 rVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdmd--GleLL~~Ir~~- 94 (529)
||++. |.+..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..++..- --++++.++..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 666666677888888899998854 45678888887764 99999988776321 23445555543
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHH
Q 009670 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQ 137 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~ 137 (529)
+....|++-+....+...+..++|++.|+..--+.++....++
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 4344566766666666778889999999998888877766543
No 91
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.98 E-value=0.23 Score=45.82 Aligned_cols=115 Identities=17% Similarity=0.055 Sum_probs=82.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLL~~Ir~ 93 (529)
+.+||+. |.+..=...+..+|+..||+|+.. ...++.++.+.+.. ||+|.+-..|... .-.++++.++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4678887 777777888888999999999854 45688888887664 9999999888742 23445566653
Q ss_pred C-C-CCcEEEEecCC------CHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 94 E-M-DLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 94 ~-~-~ipVIvlTa~~------d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
. . +++ |++.+.. ..+...++.++|++..+...-+.+++...+++.+
T Consensus 81 ~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 3 444 4455443 3445567889999888887788888888877665
No 92
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.45 E-value=0.59 Score=42.85 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=78.1
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CCHH-HHHHHHhc-
Q 009670 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGL- 93 (529)
Q Consensus 24 mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLL~~Ir~- 93 (529)
.||++. |-+..-...+..+|+..||+|+.. .+.++.++...+.. +|+|.+-..+.. +..+ ++++.++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455554 455556677888899999998843 56788888887664 898888665542 2222 24455543
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
......|++-+..-.+...+..++|+++|+..--+..++...+.+.++
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 232334555654555566778899999999987888888887776543
No 93
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.44 E-value=0.18 Score=44.62 Aligned_cols=93 Identities=15% Similarity=0.063 Sum_probs=63.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhcC-CCCcEEEEe
Q 009670 30 DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGLE-MDLPVVMLS 103 (529)
Q Consensus 30 DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLL~~Ir~~-~~ipVIvlT 103 (529)
|.+..=...+..+|+..||+|... ...++.++.+.+.+ ||+|.+-..+... ...++++.++.. +.-..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 556666778888999999998753 35677778887664 9999998876642 345566766544 312445566
Q ss_pred cCCCHHHHHHHHhcCCcEeEe
Q 009670 104 AYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~ 124 (529)
+..-......+.+.|++.|+.
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCCCChhHHHHHHcCCeEEEC
Confidence 665555445677899976665
No 94
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.26 E-value=0.029 Score=66.48 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=43.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYM 79 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~M 79 (529)
...+.+||||||++.++..+..+|++.|++|..+.+. +. ...+||||+|+.+
T Consensus 686 ~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~--~~~~Dlvl~D~~~ 737 (894)
T PRK10618 686 LLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LI--SQEYDIFLTDNPS 737 (894)
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------cc--CCCCCEEEECCCC
Confidence 3457899999999999999999999999999988753 11 2259999999984
No 95
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.03 E-value=0.57 Score=54.24 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=71.4
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCC
Q 009670 24 MRVLAVDDDQ-TC-----LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMD 96 (529)
Q Consensus 24 mrVLIVDDd~-~v-----~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ 96 (529)
|+|+|||++- .. .+.|...|++.||+|..+.+..+++..++.. ..++.|++|.. +. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWD--EY-SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecc--cc-hHHHHHHHHHhCCC
Confidence 6788888773 11 3456667778899999999999999998854 36889999852 22 355777664 6789
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCC-CHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~-~~eeL~~~l~~vlr~ 142 (529)
+||+++........+-...-.-++.|+..-. +.+.+...+.+..++
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNE 123 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHH
Confidence 9999987654333222222222445544332 233333344444433
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=93.58 E-value=0.64 Score=53.84 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=58.0
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCC
Q 009670 24 MRVLAVDDDQ-T-----CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMD 96 (529)
Q Consensus 24 mrVLIVDDd~-~-----v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ 96 (529)
|+|+||+++. . -.+.|...|++.||+|..+.+..+++..++.. ..++.|++|. .+. ..++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDW--DKY-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEec--chh-hHHHHHHHHHhCCC
Confidence 6788887662 1 14556667788899999999999999998854 3688999984 222 244777664 6789
Q ss_pred CcEEEEecCC
Q 009670 97 LPVVMLSAYS 106 (529)
Q Consensus 97 ipVIvlTa~~ 106 (529)
+||+++....
T Consensus 77 ~Pv~~~~~~~ 86 (714)
T PRK15400 77 LPLYAFANTY 86 (714)
T ss_pred CCEEEEcccc
Confidence 9999987654
No 97
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.56 E-value=0.47 Score=49.33 Aligned_cols=84 Identities=19% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe-cCCCHHHHHHHHhcCCcEeEeC
Q 009670 47 QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS-AYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 47 gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT-a~~d~e~v~~al~~GA~DYL~K 125 (529)
|.++..+.+..++-.... .-.+|++|-.+-. ..++. ...+...+|+++ ...+.+....+++.||.|||.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~~~-~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMAE----ACAAA-GLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhhh----HHHhc-cCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 345666666655543332 3568898864411 11111 111223355454 4667889999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 009670 126 PVRMEELKNTWQHV 139 (529)
Q Consensus 126 P~~~eeL~~~l~~v 139 (529)
|++.++|...+.++
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998776
No 98
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=92.46 E-value=2.9 Score=36.50 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCC-CC-CHHHHHHHHhc-CCCCcEEEEec
Q 009670 31 DDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMP-DM-DGFKLLELVGL-EMDLPVVMLSA 104 (529)
Q Consensus 31 Dd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MP-dm-dGleLL~~Ir~-~~~ipVIvlTa 104 (529)
-++.-...+..+|++.||+|... ...++..+.+++.+ ||+|.+...+. .. ...++++.++. .++++|| +-+
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv-~GG 88 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV-VGG 88 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE-EEE
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE-EEC
Confidence 44667788999999999998866 33577777777664 99999988443 33 34556666654 4555544 555
Q ss_pred CCCHHHHHHHHh--cCCcEeEeC
Q 009670 105 YSDTKLVMKGIN--HGACDYLLK 125 (529)
Q Consensus 105 ~~d~e~v~~al~--~GA~DYL~K 125 (529)
..-...-.++++ .|++..+.-
T Consensus 89 ~~~t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 89 PHATADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SSSGHHHHHHHHHHHTSEEEEEE
T ss_pred CchhcChHHHhccCcCcceecCC
Confidence 443444455554 566655543
No 99
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.02 E-value=4.1 Score=37.65 Aligned_cols=108 Identities=9% Similarity=0.033 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHH-HHHHHHhcC-CCCcEEEEecC
Q 009670 32 DQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGLE-MDLPVVMLSAY 105 (529)
Q Consensus 32 d~~v~~~L~~~Le~~gy~V~~---a~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLL~~Ir~~-~~ipVIvlTa~ 105 (529)
+..=..++..+|+..||+|+. ....++.++...+.. +|+|-+-..|-. +..+ ++.+.++.. ..-++|++-+.
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 344446778889999999984 457788888887764 999998877753 2222 344555432 22345666663
Q ss_pred ---CCHH---HHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 106 ---SDTK---LVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 106 ---~d~e---~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
...+ ...++.++|++..+...-.++++...+++.++
T Consensus 92 ~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred cCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1222 24467799988888877888988888887653
No 100
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.99 E-value=1.6 Score=44.24 Aligned_cols=111 Identities=16% Similarity=0.215 Sum_probs=75.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHH------hCCCeEE-EE-CCHHHHHHHHHhcCCCceEEEEecCCC---------CCCHHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLR------ECQYEVT-VT-NRAITALKMLRENRNNFDLVISDVYMP---------DMDGFK 86 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le------~~gy~V~-~a-~sa~eALe~L~e~~~~pDLVIlDi~MP---------dmdGle 86 (529)
+|+=|+.|+......+...++ +.||.|. .| .+...|.++..- .+++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~---G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA---GCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 577777766544443333332 3499877 44 566666655543 37877 77 111257
Q ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC-----CCCHHHHHHHHHHHHHh
Q 009670 87 LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIRR 142 (529)
Q Consensus 87 LL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K-----P~~~eeL~~~l~~vlr~ 142 (529)
+++.++...++|||+=.+-...+.+.++++.||+..++- .-++..+..++...+..
T Consensus 166 ~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 777776667899999999999999999999999999764 34466666666666554
No 101
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.66 E-value=1.6 Score=44.28 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=74.5
Q ss_pred cEEEEEeCCHHHHHHHHHHH------HhCCCeEE-EE-CCHHHHHHHHHhcCCCceEEEEecCCC---------CCCHHH
Q 009670 24 MRVLAVDDDQTCLKILEKFL------RECQYEVT-VT-NRAITALKMLRENRNNFDLVISDVYMP---------DMDGFK 86 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~L------e~~gy~V~-~a-~sa~eALe~L~e~~~~pDLVIlDi~MP---------dmdGle 86 (529)
+|+=|+.|+......+...+ -+.||.|. .| .+...|.++..- .||+| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~---G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA---GCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 57777766654333333333 23499977 44 666666655543 37877 77 111156
Q ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC-----CCCHHHHHHHHHHHHHh
Q 009670 87 LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIRR 142 (529)
Q Consensus 87 LL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K-----P~~~eeL~~~l~~vlr~ 142 (529)
+++.++...++|||+=.+-...+.+.+++++||+..++- .-++..+..++...+..
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 777776657899999999999999999999999999764 34466666666666554
No 102
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=90.83 E-value=1.2 Score=40.50 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=77.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-HH-hc-C
Q 009670 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-LV-GL-E 94 (529)
Q Consensus 18 ~~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~-~I-r~-~ 94 (529)
.....+-+.+.||.+.........+|..-+.+|+.-.... .+-.. .+|.+++.+-.+-.+-+.+.+ ++ +. .
T Consensus 6 ~~~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~lp~~--hYD~~Ll~vavtfr~n~tm~~~~l~~Al~ 79 (140)
T COG4999 6 TACLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----ALPPA--HYDMMLLGVAVTFRENLTMQHERLAKALS 79 (140)
T ss_pred hhhhccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----ccChh--hhceeeecccccccCCchHHHHHHHHHHh
Confidence 3455678999999999999999999999898988543322 22111 389999999887666555553 33 21 1
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHH
Q 009670 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l 136 (529)
+.--||+--.......+.+....|+.+.|+||++..+|.-.+
T Consensus 80 mtd~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 80 MTDFVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred hhcceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 212244443444445566777899999999999998887643
No 103
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=90.46 E-value=5.1 Score=39.35 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=57.4
Q ss_pred HHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC-------CCCCCHHHHHHHHhcCCCCcEEEEecCCCHH
Q 009670 39 LEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVY-------MPDMDGFKLLELVGLEMDLPVVMLSAYSDTK 109 (529)
Q Consensus 39 L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~-------MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e 109 (529)
+.+.+++ .+..+. .+.+.+++...... .+|++.+... ......+++++.++...++|||...+-.+.+
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~ 186 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPE 186 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 3344444 566654 45677777655432 4888765321 1223357788877766679999999998999
Q ss_pred HHHHHHhcCCcEeEeC
Q 009670 110 LVMKGINHGACDYLLK 125 (529)
Q Consensus 110 ~v~~al~~GA~DYL~K 125 (529)
.+.++++.||+..+.=
T Consensus 187 ~~~~~l~~GadgV~iG 202 (221)
T PRK01130 187 QAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHCCCCEEEEc
Confidence 9999999999988664
No 104
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.93 E-value=3.9 Score=35.09 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=53.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
+||||...+.....++..+++.|+++... .........+...-...|+||+=...-..+-...++..-...++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999998766 222222222332222479888766555555555555544556889887
Q ss_pred EecC
Q 009670 102 LSAY 105 (529)
Q Consensus 102 lTa~ 105 (529)
.-..
T Consensus 81 ~~~~ 84 (97)
T PF10087_consen 81 SRSR 84 (97)
T ss_pred ECCC
Confidence 7543
No 105
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.05 E-value=8.9 Score=36.84 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=49.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCC--------CHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPDM--------DGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm--------dGleLL~~Ir~~-~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
.+.+..++.+.... .+|.|.+.-..|.. .|++.++.++.. +++||++..+- +.+.+.+++.+||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 44566677666543 48999987666643 358888877544 34898888776 5788889999999998
Q ss_pred Ee
Q 009670 123 LL 124 (529)
Q Consensus 123 L~ 124 (529)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 75
No 106
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=86.81 E-value=14 Score=33.96 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhcC--CCCcEEEEec
Q 009670 32 DQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-MDG-FKLLELVGLE--MDLPVVMLSA 104 (529)
Q Consensus 32 d~~v~~~L~~~Le~~gy~V~~---a~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdG-leLL~~Ir~~--~~ipVIvlTa 104 (529)
+..=..++..+|+..||+|+- ....++.++...+.. +|+|-+-..|.. +.. -++++.++.. .+++ |++-+
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~-vivGG 88 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDIL-LYVGG 88 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCe-EEEEC
Confidence 344456788889999999984 356788888887764 999998877764 333 3345555532 2433 44555
Q ss_pred CC-----C-HHHHHHHHhcCCcEeEeCCCCHHHHHHHHH
Q 009670 105 YS-----D-TKLVMKGINHGACDYLLKPVRMEELKNTWQ 137 (529)
Q Consensus 105 ~~-----d-~e~v~~al~~GA~DYL~KP~~~eeL~~~l~ 137 (529)
.. + .+...+..++|++..+...-.++++...++
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 42 2 234456779999998887777877776654
No 107
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=86.21 E-value=9.1 Score=37.25 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=65.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLL~~Ir~ 93 (529)
.-||++. |-+..=..++..+|+..||+|+.. ...++.++.+.+.+ ||+|-+-..|... ...++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578877 667766788888999999998854 35678888887765 9999998877753 23445566654
Q ss_pred C-C--CCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 94 E-M--DLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 94 ~-~--~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
. + +++|++=-..-..+ -+-..||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 3 3 45555443333332 3556799888653
No 108
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=86.16 E-value=7.4 Score=38.55 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=68.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLL~~Ir~ 93 (529)
.-||++. |.+..=..++..+|+..||+|+.. -..++.++.+.+.+ ||+|.+-..|+. +. -.++++.++.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHHh
Confidence 4577777 677777778888899999999854 35788888888765 999999988874 33 2345566653
Q ss_pred -CCCCcEEEEecCCCHHHHHH---HHhcCCcEeEeCCC
Q 009670 94 -EMDLPVVMLSAYSDTKLVMK---GINHGACDYLLKPV 127 (529)
Q Consensus 94 -~~~ipVIvlTa~~d~e~v~~---al~~GA~DYL~KP~ 127 (529)
..+++|++=-+.-+.+...+ +-..||+.|-.-..
T Consensus 166 ~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~ 203 (213)
T cd02069 166 RGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDAS 203 (213)
T ss_pred cCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHH
Confidence 34555554443444444332 13469988865433
No 109
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=85.62 E-value=22 Score=33.34 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=75.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH----HHH
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL----ELV 91 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~---a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL----~~I 91 (529)
..||||. |-+..=.+.+.+.|+..||+|.. ..+.+|+.+..-+. +.|+|.+-..- ....+++ +.+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl~--g~h~~l~~~lve~l 87 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSLD--GGHLTLVPGLVEAL 87 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEecc--chHHHHHHHHHHHH
Confidence 4666665 77777788999999999999884 46888988887554 37877665422 2233333 444
Q ss_pred hcCCCCcEE-EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 92 GLEMDLPVV-MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 92 r~~~~ipVI-vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+..---.|+ +.-+.-..+...+..++|++.|+.--....+...-+...+.
T Consensus 88 re~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 88 REAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 432222333 45555555666677789999999866777776665555443
No 110
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.21 E-value=13 Score=32.20 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=65.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECC-HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~s-a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
|||.||.--..-...+..+++. .+++++ .+.. .+.+....+.. .+. ++.|+ -+.+.. +++-+|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~--~~~-~~~~~----------~~ll~~-~~~D~V 66 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY--GIP-VYTDL----------EELLAD-EDVDAV 66 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT--TSE-EESSH----------HHHHHH-TTESEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh--ccc-chhHH----------HHHHHh-hcCCEE
Confidence 5788888777766677777766 566765 4443 33344333333 244 44441 123321 233444
Q ss_pred EEe--cCCCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 101 MLS--AYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlT--a~~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+++ .....+.+.++++.|..=|+-||+ +.+++.+.++.+.+.
T Consensus 67 ~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 67 IIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 444 344566788999999999999997 788888888776554
No 111
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=84.41 E-value=22 Score=36.40 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=68.4
Q ss_pred HHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCC--HH---HHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009670 42 FLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDMD--GF---KLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 42 ~Le~~gy~V~~--a~sa~eALe~L~e~~~~pDLVIlDi~MPdmd--Gl---eLL~~Ir~~~~ipVIvlTa~~d~e~v~~a 114 (529)
.|-+.||.|.. ..+..-|.++.+.. + .+++-+--|=.+ |+ ..++.|...+++|||+=.+-...+.+..+
T Consensus 132 ~Lv~eGF~VlPY~~~D~v~a~rLed~G---c-~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~A 207 (267)
T CHL00162 132 FLVKKGFTVLPYINADPMLAKHLEDIG---C-ATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQA 207 (267)
T ss_pred HHHHCCCEEeecCCCCHHHHHHHHHcC---C-eEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHH
Confidence 44466999883 34555555554322 3 334444444333 32 45677777888999999999999999999
Q ss_pred HhcCCcEeEe-----CCCCHHHHHHHHHHHHHhc
Q 009670 115 INHGACDYLL-----KPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 115 l~~GA~DYL~-----KP~~~eeL~~~l~~vlr~~ 143 (529)
+++|++..+. |--++.++..+++.+++..
T Consensus 208 mElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AG 241 (267)
T CHL00162 208 MELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAG 241 (267)
T ss_pred HHcCCCEEeecceeecCCCHHHHHHHHHHHHHHH
Confidence 9999999854 5667888888888887643
No 112
>PRK15320 transcriptional activator SprB; Provisional
Probab=82.22 E-value=20 Score=35.67 Aligned_cols=98 Identities=16% Similarity=0.072 Sum_probs=62.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 25 RVLAVDDDQTCLKILEKFLREC--QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~--gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
+|+|-.|.=.+.-.+..++++. +..|.+|.+....+..++.. ||.+++=.--|..--+-+-.....-++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 4777788877777788888763 56677888888888888754 665554333444333322233344567789888
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeC
Q 009670 103 SAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~K 125 (529)
+..--.....-.--+|+-||++|
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH
Confidence 86553332222235799999876
No 113
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.85 E-value=19 Score=35.24 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=52.7
Q ss_pred CeEE-EECCHHHHHHHHHhcCCCceEEEEecC-------CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCC
Q 009670 48 YEVT-VTNRAITALKMLRENRNNFDLVISDVY-------MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGA 119 (529)
Q Consensus 48 y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~-------MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA 119 (529)
..+. .+.+.+++...... .+|++.+..+ .....++++++.++...++|||...+-.+.+.+.++++.||
T Consensus 124 ~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~Ga 200 (219)
T cd04729 124 CLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGA 200 (219)
T ss_pred CeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 5443 45677787665543 4887754321 11223567888776555799999999989999999999999
Q ss_pred cEeEeC
Q 009670 120 CDYLLK 125 (529)
Q Consensus 120 ~DYL~K 125 (529)
+..+.-
T Consensus 201 dgV~vG 206 (219)
T cd04729 201 DAVVVG 206 (219)
T ss_pred CEEEEc
Confidence 988764
No 114
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=81.80 E-value=16 Score=42.68 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=75.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhcC
Q 009670 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGLE 94 (529)
Q Consensus 24 mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~---a~sa~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLL~~Ir~~ 94 (529)
.||++. |.+..-...+..+|+..||+|.. ..+.+++.+...+.. +|+|++-..+... ..-++++.++..
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 456554 34444556778888889999863 246788888877654 8888875554432 234566666644
Q ss_pred CCCcE-EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 95 MDLPV-VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 95 ~~ipV-IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
..-.| |++.+..-.+......++|+++|+..-.+..++...+++.++
T Consensus 661 G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 661 GREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 21124 556655334444566789999999988888888877776654
No 115
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=76.61 E-value=18 Score=35.20 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=60.9
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhcC
Q 009670 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MDG-FKLLELVGLE 94 (529)
Q Consensus 24 mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdG-leLL~~Ir~~ 94 (529)
-+|++. |.+..=...+..+|+..||+|+.. ...++.++.+++.+ ||+|-+-+.|.. +.. .++++.++..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 355554 344555567777888899999854 35678888887765 999999988774 233 3345556543
Q ss_pred --C-CCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 95 --M-DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 95 --~-~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+ +++ |++-+..-.. .-+.+.||+.|-.
T Consensus 163 ~~~~~v~-i~vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVK-FMVGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCCE-EEEEChhcCH--HHHHHhCCcEEeC
Confidence 2 344 4455543322 2345779998864
No 116
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=76.05 E-value=14 Score=36.29 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=46.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcC--CCceEEEEecC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLRENR--NNFDLVISDVY 78 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~~--~~pDLVIlDi~ 78 (529)
.|.+-+|.-||-++...+..+.++++.|+. |. ...++.+.+..+.... ..+|+||+|..
T Consensus 67 l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 67 LPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp STTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred hcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 556679999999999999999999998873 55 5588888888776532 36999999984
No 117
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=75.50 E-value=28 Score=35.46 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHH
Q 009670 38 ILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 38 ~L~~~Le~~gy~--V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir--~~~~ipVIvlTa~~d~e~v~~ 113 (529)
.+++.|+.-..- +........+.+++... .+|.|++|..--..|--++...++ ....++.|+.....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 356666552221 22223334566666544 499999999777777666666664 234577888889999999999
Q ss_pred HHhcCCcEeEeCCC-CHHHHHHHHHHH
Q 009670 114 GINHGACDYLLKPV-RMEELKNTWQHV 139 (529)
Q Consensus 114 al~~GA~DYL~KP~-~~eeL~~~l~~v 139 (529)
+++.||...+.-=+ +.++.+.+++..
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999987444 566666666654
No 118
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=75.09 E-value=40 Score=29.86 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhc-CCCCcEEEEecCCCHH
Q 009670 34 TCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGL-EMDLPVVMLSAYSDTK 109 (529)
Q Consensus 34 ~v~~~L~~~Le~~gy~V~~a--~sa~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLL~~Ir~-~~~ipVIvlTa~~d~e 109 (529)
.-...+..+|++.|+++... ...++.++.+... .+||+|.+.+.-... ...++++.+|. .++++||+=-.+....
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~ 81 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFF 81 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhC
Confidence 44567888898888876643 3456666666542 259999998855544 35556777764 5666666543333322
Q ss_pred HHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 110 LVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 110 ~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
-...+.....||+.+---..-+...++.+.
T Consensus 82 -p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 82 -PEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred -HHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 222244455678887544344444555443
No 119
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=75.02 E-value=11 Score=36.30 Aligned_cols=67 Identities=28% Similarity=0.464 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH---HHHHHHHh
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE--V-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDG---FKLLELVG 92 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~--V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdG---leLL~~Ir 92 (529)
-+|+.||-++.....+++-++..+.. + +...+...++..+......+|+|++|- |-..+ .++++.+.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 48999999999999999999987653 3 356788888877654444799999994 43222 44666654
No 120
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=75.02 E-value=26 Score=36.58 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHH
Q 009670 39 LEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVM 112 (529)
Q Consensus 39 L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~ 112 (529)
+-..++..|..|. .+.+.++|..+.+. .+|.|++.-.-. ...-+++++.++...++|||.--+-.+...+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 3344555676654 56788888766653 489888744322 22347788877666679999999999999999
Q ss_pred HHHhcCCcEeEeC
Q 009670 113 KGINHGACDYLLK 125 (529)
Q Consensus 113 ~al~~GA~DYL~K 125 (529)
+++..||+...+=
T Consensus 178 ~al~~GA~gV~iG 190 (307)
T TIGR03151 178 AAFALGAEAVQMG 190 (307)
T ss_pred HHHHcCCCEeecc
Confidence 9999999988764
No 121
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.27 E-value=35 Score=34.65 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=61.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCC-CHHH
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV-RMEE 131 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir--~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~-~~ee 131 (529)
....+.+++... .+|.|++|..--.+|--++...++ ....++.|+.....+...+.++++.||...+.-=+ +.++
T Consensus 21 ~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taee 98 (249)
T TIGR03239 21 GNPITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEE 98 (249)
T ss_pred CCcHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHH
Confidence 334566666544 499999999777777666666664 23456778888999999999999999999988444 5666
Q ss_pred HHHHHHHH
Q 009670 132 LKNTWQHV 139 (529)
Q Consensus 132 L~~~l~~v 139 (529)
...+++..
T Consensus 99 a~~~v~a~ 106 (249)
T TIGR03239 99 AERAVAAT 106 (249)
T ss_pred HHHHHHHc
Confidence 66666554
No 122
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=72.98 E-value=26 Score=32.75 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=49.2
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 53 TNRAITALKMLRENRNNFDLVISDVYMPD--------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 53 a~sa~eALe~L~e~~~~pDLVIlDi~MPd--------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+.+..++.+.+.. .+|.|+++...|. ..|++.++.++...++||++..+-. .+.+.++++.|++.+..
T Consensus 102 ~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 102 THSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 3566666665542 4899998765442 2467788777655778999887764 67888999999998765
Q ss_pred C
Q 009670 125 K 125 (529)
Q Consensus 125 K 125 (529)
=
T Consensus 178 g 178 (196)
T cd00564 178 I 178 (196)
T ss_pred e
Confidence 3
No 123
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=72.27 E-value=53 Score=32.11 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=54.1
Q ss_pred HHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009670 42 FLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 42 ~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~ 113 (529)
.+++.+..+. .+.+..++.++.+ . ..|.|+++-.-.+ ...+++++.++...++||++.-+-...+.+.+
T Consensus 97 ~~~~~~i~~i~~v~~~~~~~~~~~-~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~ 173 (236)
T cd04730 97 RLKAAGIKVIPTVTSVEEARKAEA-A--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAA 173 (236)
T ss_pred HHHHcCCEEEEeCCCHHHHHHHHH-c--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHH
Confidence 3344455544 3455566555443 3 3788887643211 14567787776666789999888888888999
Q ss_pred HHhcCCcEeEeC
Q 009670 114 GINHGACDYLLK 125 (529)
Q Consensus 114 al~~GA~DYL~K 125 (529)
++..||+...+-
T Consensus 174 ~l~~GadgV~vg 185 (236)
T cd04730 174 ALALGADGVQMG 185 (236)
T ss_pred HHHcCCcEEEEc
Confidence 999999988764
No 124
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=71.84 E-value=26 Score=36.40 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=62.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEec---------------------------------CC--CCCCHHHHHHHHhcCCC
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDV---------------------------------YM--PDMDGFKLLELVGLEMD 96 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi---------------------------------~M--PdmdGleLL~~Ir~~~~ 96 (529)
-+.+..||+...+. .+|+|=+-+ .. ....|+++++.+.....
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~ 194 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGR 194 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcC
Confidence 45778888888764 378776654 00 12347888887766667
Q ss_pred CcEE--EEecCCCHHHHHHHHhcCCcEeEeCC-----CCHHHHHHHHHHHHHhc
Q 009670 97 LPVV--MLSAYSDTKLVMKGINHGACDYLLKP-----VRMEELKNTWQHVIRRK 143 (529)
Q Consensus 97 ipVI--vlTa~~d~e~v~~al~~GA~DYL~KP-----~~~eeL~~~l~~vlr~~ 143 (529)
+||| ...+-...+.+.++++.||+.+++=- -++.+....+...+.++
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 9997 77777799999999999999986543 35666666666665543
No 125
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=71.42 E-value=46 Score=35.42 Aligned_cols=104 Identities=10% Similarity=0.109 Sum_probs=62.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-C-CCeEE-EECC-HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRE-C-QYEVT-VTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~-~-gy~V~-~a~s-a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
..+||.||.- .. .......+.. . +++++ ++.. .+.|.+..++.. +. +..|+ -++ + ...++
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~g--i~-~y~~~-------eel---l-~d~Di 65 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHRLG--VP-LYCEV-------EEL---P-DDIDI 65 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhC--CC-ccCCH-------HHH---h-cCCCE
Confidence 3589999997 44 3333344444 3 57866 4443 444444444321 11 22222 122 2 34566
Q ss_pred cEEEEe----cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 98 PVVMLS----AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 98 pVIvlT----a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
-+|.+. .....+.+.+|+++|..=++-||+..+|..+.++.+.+
T Consensus 66 ~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 66 ACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 666662 23567889999999999999999997777776666654
No 126
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=70.75 E-value=46 Score=34.23 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=66.0
Q ss_pred HHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHH
Q 009670 39 LEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 39 L~~~Le~~gy~--V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir--~~~~ipVIvlTa~~d~e~v~~a 114 (529)
+++.|+.-... .........+.+++... .+|.|++|..--..|--++...++ ....+..++.....+...+.++
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~ 86 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHH
Confidence 55666542222 22223334556666544 499999999777666666665554 2345667778888899999999
Q ss_pred HhcCCcEeEeCCC-CHHHHHHHHHHH
Q 009670 115 INHGACDYLLKPV-RMEELKNTWQHV 139 (529)
Q Consensus 115 l~~GA~DYL~KP~-~~eeL~~~l~~v 139 (529)
++.||.+.+.--+ +.++.+.+++..
T Consensus 87 LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 87 LDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred hCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 9999999998555 556666666654
No 127
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=70.26 E-value=1e+02 Score=31.37 Aligned_cols=95 Identities=20% Similarity=0.102 Sum_probs=60.1
Q ss_pred EEEeC-CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEec---CCCCCCHHHHHHHH-hcCC-CCcE
Q 009670 27 LAVDD-DQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDV---YMPDMDGFKLLELV-GLEM-DLPV 99 (529)
Q Consensus 27 LIVDD-d~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi---~MPdmdGleLL~~I-r~~~-~ipV 99 (529)
|++.+ ++.....+....+..|.++. .+.+.+|+..++.. .+|+|-+.- ..-..| ++..+.+ +..+ ..++
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~v 214 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLV 214 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEE
Confidence 44444 33344444444455787754 67888888766643 478776531 111223 5555443 3344 3589
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
|..++-.+.+.+.++.++||+.+++-
T Consensus 215 IaegGI~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999999998653
No 128
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.09 E-value=56 Score=32.03 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 56 AITALKMLRENRNNFD-LVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 56 a~eALe~L~e~~~~pD-LVIlDi~MPdm-dG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
..+..+.+.+. .++ +++.|+.--++ .| +++++.+....++|||+-.+-.+.+.+.++++.||+..++
T Consensus 147 ~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 147 LEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 34455555443 366 77788854432 22 6777777666789999999999999999999999999876
No 129
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=70.00 E-value=42 Score=35.61 Aligned_cols=115 Identities=10% Similarity=0.161 Sum_probs=73.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHH------hCCCeE-E-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLR------ECQYEV-T-VTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLEL 90 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le------~~gy~V-~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~ 90 (529)
+|+=|+.|++.....+...++ +.||.| . ++.+...|.++..- .| ++++=+-=| +..--+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHH
Confidence 466666666554443333332 348987 3 44667777665543 25 333321111 1223345665
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe-----CCCCHHHHHHHHHHHHHh
Q 009670 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 91 Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~-----KP~~~eeL~~~l~~vlr~ 142 (529)
+...+++|||+=.+-...+.+..|+++|++..|+ |--++..+..+++..+..
T Consensus 244 ~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 244 IVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 5556789999999999999999999999999865 455777777787777654
No 130
>PRK12704 phosphodiesterase; Provisional
Probab=69.80 E-value=5.5 Score=44.72 Aligned_cols=153 Identities=11% Similarity=0.006 Sum_probs=85.1
Q ss_pred cEEEEecCCCHH--HHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccCCCcccC----CCchhHHhhhhcccCCCCCC
Q 009670 98 PVVMLSAYSDTK--LVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDPKDQN----RSPHEFEKSYRKRKDQDGED 171 (529)
Q Consensus 98 pVIvlTa~~d~e--~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~~~~~~----~~~~~~~~~~~kr~~~~~~~ 171 (529)
.+|++|+.+... .+..+++.++.|+..||++++++...++.-+........... ..................
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~~~~~ge~~~~~lgi~~~~~~i~~ll~~l~~-- 328 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEEIREEGEQAVFELGIHGLHPELIKLLGRLKY-- 328 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHhhc--
Confidence 389999988776 888999999999999999999999988877653210000000 000000000000000000
Q ss_pred CCCCCCCCCCCccccccCCCcceehhHHHHHHHHHHHHhcCCCcchHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhh
Q 009670 172 EDEDGDDDGHENENSTTQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGN 251 (529)
Q Consensus 172 ~~~~~~~~~~~~e~~~~~kk~r~vw~~~L~~kflaavn~lGldkavPd~IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~ 251 (529)
++.. ++..-.|.+++...+..++.. +|++...-..---++..|++-..+ .+..|..
T Consensus 329 ---------R~~~---~qn~l~Hs~~Va~lA~~lA~~--lgld~~~a~~AgLLHDIGK~~~~e----------~~~~H~~ 384 (520)
T PRK12704 329 ---------RTSY---GQNVLQHSIEVAHLAGLMAAE--LGLDVKLAKRAGLLHDIGKALDHE----------VEGSHVE 384 (520)
T ss_pred ---------cCcC---CCcHhHHHHHHHHHHHHHHHH--hCcCHHHHHHHHHHHccCcCcccc----------ccCCHHH
Confidence 1100 111125777888888777766 788754433222125556654332 1345665
Q ss_pred hhhhhhhhhccCCCCchhhhhhhhhhcCCCCc
Q 009670 252 KTLEAGMVASVGSKDSSYLRIGALDGFGGSHS 283 (529)
Q Consensus 252 ~~~~~~g~~~l~~sd~~~l~~aa~ial~hhe~ 283 (529)
.|..++... .+......+.++||++
T Consensus 385 -----iGa~il~~~--~~~~~v~~aI~~HHe~ 409 (520)
T PRK12704 385 -----IGAELAKKY--KESPVVINAIAAHHGD 409 (520)
T ss_pred -----HHHHHHHHc--CCCHHHHHHHHHcCCC
Confidence 666665432 2335566778899985
No 131
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.68 E-value=19 Score=36.09 Aligned_cols=58 Identities=12% Similarity=0.263 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCC------HHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYSD------TKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~d------~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
++++++.++...++|+++|+-... ...+.++.++|++..+.-.+..+++...++.+.+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 455666666555789988877553 5668888899999999966777777666666544
No 132
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=69.65 E-value=20 Score=37.10 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=58.7
Q ss_pred EEEEeCCHHHHH---HHHHHHH----hC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCC
Q 009670 26 VLAVDDDQTCLK---ILEKFLR----EC-QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (529)
Q Consensus 26 VLIVDDd~~v~~---~L~~~Le----~~-gy~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ 96 (529)
|||-|.|-.... .++..++ .. ...| +.+.+.++|.++++. .+|+|++| +|+..+-.+.++.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 566666654432 3444432 22 1223 356899999999864 48999999 3443344444455542222
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
-.+|-.++--+.+.+.+....|++-+.
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 236778888899999998899987653
No 133
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=69.60 E-value=48 Score=35.36 Aligned_cols=111 Identities=12% Similarity=0.124 Sum_probs=59.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeE---------------EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHH
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEV---------------TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKL 87 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V---------------~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleL 87 (529)
+++++||-|.+.-...+++.+++.|+.. .......+...++.. .|++++--...+.-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCCH
Confidence 4677777777655455666666655532 222223343344432 577665322212234445
Q ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 88 LELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 88 L~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
++-+. ..+|||.--...+...+.+.+. ..+++..|-+.++|..++..++.
T Consensus 338 lEAma--~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPAA--FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHH--hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 55432 3578885322233333333332 12466778889999999998864
No 134
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=69.15 E-value=7.9 Score=37.93 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=51.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec--CCCCCCH--HHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV--YMPDMDG--FKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi--~MPdmdG--leLL~~Ir~~~~ip 98 (529)
+++||+||....+--.|..+|+..|.+|.+..+....++.++.. .||.|++-- .-|...| +++++.. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~--~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL--KPDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc--CCCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 37899999999999999999999998888775543333344433 489999864 2333333 3444433 34578
Q ss_pred EEEEe
Q 009670 99 VVMLS 103 (529)
Q Consensus 99 VIvlT 103 (529)
|+=+.
T Consensus 77 iLGVC 81 (191)
T COG0512 77 ILGVC 81 (191)
T ss_pred EEEEC
Confidence 86554
No 135
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=68.96 E-value=39 Score=34.88 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=62.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
+++++|+.+.+. ...++..++..+.. +.......+..+++.. .|++++=-. .+.=|..+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 356667665543 24455555554432 3333333344444432 466654222 2233566677553 357887
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+ |.... ..+.+..|.++++..|-+.+++..++..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 43332 3456677888999999999999999998764
No 136
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.19 E-value=24 Score=36.73 Aligned_cols=94 Identities=13% Similarity=0.015 Sum_probs=56.7
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC-C-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 26 VLAVDDDQTCLKILEKFLRE----CQ-Y-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~----~g-y-~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
|||=|.+-...-.+...+++ .. . -.+.+.+.++|.+++.. .+|+|.+| +|.-.+--+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 55555553333233343332 22 1 24467899999999864 48999999 3432222223333332322236
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeE
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL 123 (529)
|..++--+.+.+.+..+.|++.+-
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 778888899999999999987653
No 137
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=67.70 E-value=34 Score=35.59 Aligned_cols=61 Identities=20% Similarity=0.069 Sum_probs=47.1
Q ss_pred CHHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEeEe-----CCCCHHHHHHHHHHHHHhc
Q 009670 83 DGFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 83 dGleLL~~Ir~~~~ipVI--vlTa~~d~e~v~~al~~GA~DYL~-----KP~~~eeL~~~l~~vlr~~ 143 (529)
-|+++++.+.....+||| ...+-..++.+..++++||+.+++ |.-++.+....+...+..+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 588889877666679998 777777999999999999999854 3346777777676666654
No 138
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=67.58 E-value=59 Score=32.91 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC-CCCHH
Q 009670 54 NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPVVMLSAYSDTKLVMKGINHGACDYLLK-PVRME 130 (529)
Q Consensus 54 ~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~--~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K-P~~~e 130 (529)
.......+.+... .+|.|++|+.=-..+--++...++. ...+.+++.....+...+.++++.||++.+.- --+.+
T Consensus 20 ~~~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e 97 (249)
T TIGR02311 20 LADPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAE 97 (249)
T ss_pred CCCcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHH
Confidence 3344556666554 4999999997666676666665543 33457788888888899999999999987663 35778
Q ss_pred HHHHHHHHH
Q 009670 131 ELKNTWQHV 139 (529)
Q Consensus 131 eL~~~l~~v 139 (529)
++.+.++.+
T Consensus 98 ~a~~~v~~~ 106 (249)
T TIGR02311 98 QAEAAVAAT 106 (249)
T ss_pred HHHHHHHHc
Confidence 877777765
No 139
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=67.50 E-value=62 Score=31.40 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=57.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-HHhcCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQ--YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-LVGLEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~g--y~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~-~Ir~~~~ipVI 100 (529)
-+++|+.+++..++.++++++..| |.|....+.+++++-++..-..|-|+..+....+ .++-++ .+.. .-|++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~--~~p~L 107 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK--GEPLL 107 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc--CCcEE
Confidence 478999999999999999998764 6788899999999988743235788888888876 555444 3322 44666
Q ss_pred EEec
Q 009670 101 MLSA 104 (529)
Q Consensus 101 vlTa 104 (529)
++-+
T Consensus 108 IvvG 111 (176)
T PRK03958 108 IVVG 111 (176)
T ss_pred EEEc
Confidence 6555
No 140
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=67.36 E-value=46 Score=37.45 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=19.4
Q ss_pred hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 92 GLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 92 r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
+.+++++||..+.+ .+......+.||+..+
T Consensus 504 ~~~~~~~iiar~~~--~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 504 EKRPDIEIIARAHY--DDEVAYITERGANQVV 533 (558)
T ss_pred HHCCCCeEEEEECC--HHHHHHHHHcCCCEEE
Confidence 34677888877653 3445555678887555
No 141
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=66.61 E-value=66 Score=35.77 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEEC------CHHHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHh-cCCCCcEEEE
Q 009670 32 DQTCLKILEKFLRECQ-YEVTVTN------RAITALKMLRENRNNFDLVISDVYMPDMD-GFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 32 d~~v~~~L~~~Le~~g-y~V~~a~------sa~eALe~L~e~~~~pDLVIlDi~MPdmd-GleLL~~Ir-~~~~ipVIvl 102 (529)
.|.-...+...|++.| ++|.... +.++..+.+++. .||+|.+-..-+... ..++++.++ ..|+++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4677788999999889 5777543 233445556554 499999977655432 446667665 4577766644
Q ss_pred ecCCCHHHHHHHH-hcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 103 SAYSDTKLVMKGI-NHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 103 Ta~~d~e~v~~al-~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
-.+... .-.+++ ++...||++.--..+.+.+.++.+..
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 333332 234455 35567898886655556666666543
No 142
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=66.25 E-value=35 Score=29.27 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=54.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVI 100 (529)
+++|++||.++...+.+ +..++.+.... .-.+.++.+.-. ..+.||+...- +..-+.++..++. .+..+||
T Consensus 21 ~~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 21 GIDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGIE--KADAVVILTDD-DEENLLIALLARELNPDIRII 93 (116)
T ss_dssp TSEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSS-HHHHHHHHHHHHHHTTTSEEE
T ss_pred CCEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCcc--ccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEE
Confidence 36899999998874433 34567765432 224444444332 48888887642 2234445555554 6777888
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEe
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+.... .+......++||+..+.
T Consensus 94 ~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 94 ARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp EEESS--HHHHHHHHHTT-SEEEE
T ss_pred EEECC--HHHHHHHHHCCcCEEEC
Confidence 77654 34555666789877653
No 143
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.08 E-value=53 Score=35.99 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=53.8
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CC-CCCHHHHH-HHHh-cC
Q 009670 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY--MP-DMDGFKLL-ELVG-LE 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v---~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~--MP-dmdGleLL-~~Ir-~~ 94 (529)
+.+|.+|+-|+.- ...++.+-+..++.+..+.+..+....++... .+|+||+|.- .+ +...++.+ +++. ..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 5789999988742 23455555556777777777777777776544 5899999962 11 12233333 3444 22
Q ss_pred CCC-cEEEEecCCCHHHHHHH
Q 009670 95 MDL-PVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 95 ~~i-pVIvlTa~~d~e~v~~a 114 (529)
..+ .++++++........++
T Consensus 330 ~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCeEEEEEECCCCHHHHHHH
Confidence 222 36777776665555443
No 144
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=65.92 E-value=68 Score=34.86 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=62.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
+++++||.|.+. ...++++.+.....+.-.-..++..+++.. .|++++=.. .+.=|+.+++.+. ..+|||..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 467777776554 334444444322222222233555555543 567665322 2333556666554 35788854
Q ss_pred ecCCCHHHHHHHHhc---CCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 103 SAYSDTKLVMKGINH---GACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 103 Ta~~d~e~v~~al~~---GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.. .. ..+.++. |-++++..|-+.++|..++..++.
T Consensus 362 ~~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 RA-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CC-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 32 22 3344555 889999999999999999988864
No 145
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=65.87 E-value=1.2e+02 Score=29.57 Aligned_cols=78 Identities=18% Similarity=0.044 Sum_probs=52.6
Q ss_pred HhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEec-CC-CCCCHHHHHHHHhcC--CCCcEEEEecCCCHHHHHHHHhcC
Q 009670 44 RECQYEVT-VTNRAITALKMLRENRNNFDLVISDV-YM-PDMDGFKLLELVGLE--MDLPVVMLSAYSDTKLVMKGINHG 118 (529)
Q Consensus 44 e~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi-~M-PdmdGleLL~~Ir~~--~~ipVIvlTa~~d~e~v~~al~~G 118 (529)
...|..+. .+.+.+++.+..+. .+|.+.+-- .. ....++++++.++.. .++|||...+-...+.+.+++++|
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 34577654 55777777666543 377776541 10 012345667666433 478999999999999999999999
Q ss_pred CcEeEe
Q 009670 119 ACDYLL 124 (529)
Q Consensus 119 A~DYL~ 124 (529)
|+.+++
T Consensus 195 a~gviv 200 (217)
T cd00331 195 ADAVLI 200 (217)
T ss_pred CCEEEE
Confidence 999865
No 146
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=65.65 E-value=45 Score=33.92 Aligned_cols=115 Identities=15% Similarity=0.213 Sum_probs=65.1
Q ss_pred cEEEEEeCCHH----HHHHH--HHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH-----HHHHH
Q 009670 24 MRVLAVDDDQT----CLKIL--EKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPDMDGF-----KLLEL 90 (529)
Q Consensus 24 mrVLIVDDd~~----v~~~L--~~~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGl-----eLL~~ 90 (529)
+|+=|+.|+.. ..+.+ .+.|-+.||.|. +..+..-|.++.+-. +. +++=+--|=.+|. ..++.
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~G---ca-avMPlgsPIGSg~Gi~n~~~l~~ 169 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAG---CA-AVMPLGSPIGSGRGIQNPYNLRI 169 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT----S-EBEEBSSSTTT---SSTHHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCC---CC-EEEecccccccCcCCCCHHHHHH
Confidence 46666655532 22322 334556799988 335555555554332 33 3444444534443 34566
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC-----CCCHHHHHHHHHHHHHh
Q 009670 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIRR 142 (529)
Q Consensus 91 Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K-----P~~~eeL~~~l~~vlr~ 142 (529)
+....++|||+=.+-.....+..++++|++..|+- --++..+..+++..+..
T Consensus 170 i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 170 IIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHH
Confidence 65555899999999999999999999999999875 34666677777766553
No 147
>PLN02591 tryptophan synthase
Probab=64.75 E-value=23 Score=36.04 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=45.0
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCC------CHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 83 DGFKLLELVGLEMDLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 83 dGleLL~~Ir~~~~ipVIvlTa~~------d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+.+++++.++...++|+|+||-+. -.....++.++|+++.|+-.+.++|.......+.+
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 357777777766789999888654 23457778899999999988999888877776644
No 148
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=64.24 E-value=46 Score=28.82 Aligned_cols=72 Identities=21% Similarity=0.148 Sum_probs=48.4
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHH-hcCC-CCcEEEEe
Q 009670 30 DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDMD-GFKLLELV-GLEM-DLPVVMLS 103 (529)
Q Consensus 30 DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdmd-GleLL~~I-r~~~-~ipVIvlT 103 (529)
|.++.-...+..+|++.|+++... ....+..+.+.+. .||+|.+.+.+.... .++.+..+ +..+ +++|++=-
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG 87 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGG 87 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 556667778888999999998854 3556667777664 499999998776533 34444444 4455 66665443
No 149
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=63.63 E-value=48 Score=31.56 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=49.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPD--------MDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPd--------mdGleLL~~Ir-~~~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
.+.+..++.+..+. .+|.|.++-..|. ..|+++++.+. ..+++||+++-+- +.+.+.++++.|++.+
T Consensus 102 s~h~~~e~~~a~~~---g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 102 STHNLEELAEAEAE---GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 55677777665432 4899988766552 23788888664 3456898888666 5788888999999887
Q ss_pred Ee
Q 009670 123 LL 124 (529)
Q Consensus 123 L~ 124 (529)
..
T Consensus 178 a~ 179 (196)
T TIGR00693 178 AV 179 (196)
T ss_pred EE
Confidence 54
No 150
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=62.98 E-value=27 Score=35.50 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=44.2
Q ss_pred CHHHHHHHHhcC-CCCcEEEEecCCC------HHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 83 DGFKLLELVGLE-MDLPVVMLSAYSD------TKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 83 dGleLL~~Ir~~-~~ipVIvlTa~~d------~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+.+++++.++.. .++|+++|+-+.. ...+.++.++|++..+.-....++....+..+.+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~ 138 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKK 138 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHH
Confidence 356667777654 6899888876654 5678889999999999988888887766665533
No 151
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=62.62 E-value=63 Score=36.13 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=26.8
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
..++|||.=-+......+.+|+.+||+..+.=
T Consensus 342 ~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 342 ERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred hcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 35688887778889999999999999988764
No 152
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=62.53 E-value=1.6e+02 Score=31.16 Aligned_cols=109 Identities=12% Similarity=0.154 Sum_probs=63.4
Q ss_pred ccEEEEEeCCH--------HHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 23 GMRVLAVDDDQ--------TCLKILEKFLRECQYEVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 23 ~mrVLIVDDd~--------~v~~~L~~~Le~~gy~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
.++++||.|.+ .....++...+..+-.+.... ..++..+++.. .|++++-....+.=|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 36777776532 122334444444444454433 34455555543 57777643333333555666543
Q ss_pred cCCCCcEEEEecCCCHHHHHHHHhcCCcEe-EeCCCCHHHHHHHHHHHHH
Q 009670 93 LEMDLPVVMLSAYSDTKLVMKGINHGACDY-LLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 93 ~~~~ipVIvlTa~~d~e~v~~al~~GA~DY-L~KP~~~eeL~~~l~~vlr 141 (529)
..+|||.. .... ..+.+..|.++| +..|.+.++|.+++.+++.
T Consensus 300 --~G~PVI~s-~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 --AGKPVLAS-TKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred --cCCCEEEe-CCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 35788764 3332 345567788898 5578999999999998874
No 153
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=62.26 E-value=27 Score=35.66 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=43.6
Q ss_pred HHHHHHHHh-cCCCCcEEEEecC------CCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 84 GFKLLELVG-LEMDLPVVMLSAY------SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 84 GleLL~~Ir-~~~~ipVIvlTa~------~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.+++++.++ ..+++|+|+||-+ .-.....++.++|+++.|+-.+.+++....+..+.+
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 466677666 5678999999844 334557788899999999977888887777766643
No 154
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=62.07 E-value=70 Score=35.03 Aligned_cols=107 Identities=14% Similarity=0.212 Sum_probs=63.5
Q ss_pred ccEEEEEeC---CHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 23 GMRVLAVDD---DQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 23 ~mrVLIVDD---d~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
.++++|+.+ ++...+.++.++++.+. .|.... ..+..+++. ..|++++--.. +.-|+.+++.+. ..+
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~~-Eg~p~~vlEAma--~G~ 395 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSIS-EGQPLVILEAMA--AGI 395 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCchh-hcCChHHHHHHH--cCC
Confidence 356666643 23445555566655544 233333 333334443 26777765432 334666777553 356
Q ss_pred cEEEEecCCCHHHHHHHHhc------CCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 98 PVVMLSAYSDTKLVMKGINH------GACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~------GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
|||. |.... ..+.+.. |.++++..|-+.++|.+++.+++.
T Consensus 396 PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 396 PVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 8875 44433 3344444 789999999999999999998864
No 155
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=62.03 E-value=1.3e+02 Score=28.66 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=60.8
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCeEE----EECCHHHHHHHHHhcCCCceEEEEecC-CC----CCCHHHHHHHH
Q 009670 23 GMRVLAVDDDQ--TCLKILEKFLRECQYEVT----VTNRAITALKMLRENRNNFDLVISDVY-MP----DMDGFKLLELV 91 (529)
Q Consensus 23 ~mrVLIVDDd~--~v~~~L~~~Le~~gy~V~----~a~sa~eALe~L~e~~~~pDLVIlDi~-MP----dmdGleLL~~I 91 (529)
|...+++.+.. .....+.+.+++.|..+. .+.+..++++.+.. .+|.|.+... .+ ...+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~---~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL---GVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC---CCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 45556654433 223444455556666644 34577787774432 4788777421 11 23456777766
Q ss_pred hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 92 GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 92 r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+...++||++.-+- ..+.+.++++.||+.++.-
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 54467888766666 4888999999999988654
No 156
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=61.36 E-value=1.7e+02 Score=29.81 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=60.2
Q ss_pred ccEEEEEeCCHH-HHHHHHHHHHhCCCeEE-EE--CCHHHHHHHHHhcCCCceEEEEecCCCCCC---------HHHHHH
Q 009670 23 GMRVLAVDDDQT-CLKILEKFLRECQYEVT-VT--NRAITALKMLRENRNNFDLVISDVYMPDMD---------GFKLLE 89 (529)
Q Consensus 23 ~mrVLIVDDd~~-v~~~L~~~Le~~gy~V~-~a--~sa~eALe~L~e~~~~pDLVIlDi~MPdmd---------GleLL~ 89 (529)
|..-+|+-|.|. -...+...+++.|.... .+ .+..+-++.+.+....+..++. + + +.. -.+.++
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~ 191 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVK 191 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHH
Confidence 455555555543 33445555666777633 22 2334444444444334555554 2 1 222 345666
Q ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 90 LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 90 ~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
.++...+.||++=-+-.+.+.+.++.++||+.++.-.
T Consensus 192 ~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 192 RLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 6766667787765566678999999999999998864
No 157
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=60.79 E-value=1.1e+02 Score=34.39 Aligned_cols=100 Identities=14% Similarity=0.232 Sum_probs=65.4
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEec--------------CCCC
Q 009670 23 GMRVLAVDDDQ----TCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDV--------------YMPD 81 (529)
Q Consensus 23 ~mrVLIVDDd~----~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi--------------~MPd 81 (529)
+..|+++|-.. .+...++.+=+.+ +..|. .+.+.++|..+++. .+|.|.+-+ ..|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCc
Confidence 56788887432 2223333332233 34443 36788888888764 488886642 1233
Q ss_pred CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 82 mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
..-+..+..+.....+|||.=.+-.....+.+|+.+||+...+=
T Consensus 337 ~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 337 ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 34455555554456799999999999999999999999988764
No 158
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=60.50 E-value=1.4e+02 Score=29.48 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=44.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.|++|+-....+.-|+.+++.+. ..+|||.. ... ...+.+..|..+++.++.+.+++.+++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIAS-DIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEEC-CCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46666533223345666777654 34787753 322 24556777888999999999999999998875
No 159
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=60.26 E-value=93 Score=30.15 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=54.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEec-CCCC-CCHHHHHHHHhcCCC
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTN-------RAITALKMLRENRNNFDLVISDV-YMPD-MDGFKLLELVGLEMD 96 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~-------sa~eALe~L~e~~~~pDLVIlDi-~MPd-mdGleLL~~Ir~~~~ 96 (529)
|||-|-|...++.++..-++.|-++...+ ++++.++++.+.+.+|=+|..|- ..++ ..|-+.++.+-.+++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 45557777777788877778888877543 67999999988776676777764 4443 467788888877888
Q ss_pred CcE
Q 009670 97 LPV 99 (529)
Q Consensus 97 ipV 99 (529)
+.|
T Consensus 83 IeV 85 (180)
T PF14097_consen 83 IEV 85 (180)
T ss_pred ceE
Confidence 764
No 160
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=60.21 E-value=1e+02 Score=31.96 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=62.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTN---RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~---sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
.++++||.+.+. ...+++..+..+. .|.... +..+.+..+-. ..|++++=-.. +.=|+.+++.+. ..+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~---~~d~~v~~s~~-Egf~~~~lEAma--~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK---NVSALLLTSKF-EGFPMTLLEAMS--YGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh---cCcEEEECCcc-cCcChHHHHHHH--cCC
Confidence 466777765543 3445555554433 243332 22222222111 24666653222 222566666553 357
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|||..-.... ..+.+..|.++++..|-+.++|.+++..++...
T Consensus 283 Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 283 PCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 8875321333 335677889999999999999999999987653
No 161
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=59.94 E-value=46 Score=33.80 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=71.3
Q ss_pred cEEEEEeCCHHHH----HH--HHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH-----HHHH
Q 009670 24 MRVLAVDDDQTCL----KI--LEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDMDGFK-----LLEL 90 (529)
Q Consensus 24 mrVLIVDDd~~v~----~~--L~~~Le~~gy~V~~--a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGle-----LL~~ 90 (529)
+|+=|+-|+.... +. -.+.|-+.||.|.. ..+..-|.++.+.. + .+++-+.-|=.+|.. .++.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~G---c-aavMPl~aPIGSg~G~~n~~~l~i 176 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAG---C-AAVMPLGAPIGSGLGLQNPYNLEI 176 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcC---c-eEeccccccccCCcCcCCHHHHHH
Confidence 4666665553222 22 23345567999873 34455554443322 3 445555555445443 4566
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC-----CCHHHHHHHHHHHHH
Q 009670 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP-----VRMEELKNTWQHVIR 141 (529)
Q Consensus 91 Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP-----~~~eeL~~~l~~vlr 141 (529)
|....++|||+=.+-.....+..+++.|++..|+-. -++-.+..+....+.
T Consensus 177 iie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 177 IIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 666679999999999999999999999999998753 345555556655544
No 162
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=59.78 E-value=1.4e+02 Score=31.66 Aligned_cols=98 Identities=9% Similarity=0.098 Sum_probs=62.6
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCC----------C-CCC--H
Q 009670 25 RVLAVDD----DQTCLKILEKFLRECQ-YEVT--VTNRAITALKMLRENRNNFDLVISDVYM----------P-DMD--G 84 (529)
Q Consensus 25 rVLIVDD----d~~v~~~L~~~Le~~g-y~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~M----------P-dmd--G 84 (529)
.+++||- ...+.+.++.+=+... ..|. .+.+.++|..+++. .+|.|.+-+.= . +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 6788863 2333334443333332 3343 36788888877754 48887643211 1 112 4
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+..++.+.....+|||.-.+-.....+.+|+.+||+.+..-
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55566554445789999999999999999999999988764
No 163
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.63 E-value=83 Score=32.05 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=62.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
++++|+.+.+. ...++...++.+. .|.......+..+++.. .|++++=.. .+.-|+.+++.+. ..+|||.
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~ 299 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSE-KESFGLAALEAMA--CGVPVVA 299 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCC-cCCCccHHHHHHH--cCCCEEE
Confidence 56666655433 2334445544443 24444433344444432 567666433 2334666666553 3578886
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
. ... ...+.+..|.++|+.+|-+.+++.+++..++.
T Consensus 300 s-~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 300 S-NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred e-CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 3 333 24566778899999999999999999888764
No 164
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=59.04 E-value=83 Score=34.98 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=60.8
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 009670 23 GMRVLAVDDD----QTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (529)
Q Consensus 23 ~mrVLIVDDd----~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (529)
+.+++++|.. ..+...++.+-++. +..|. .+.+.++|..+++. .+|.|.+-+. |+ ..
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGVP 315 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCcC
Confidence 6778888854 12333344333333 33433 45678888887764 3777765331 21 11
Q ss_pred HHHHHHHH-h--cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 84 GFKLLELV-G--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 84 GleLL~~I-r--~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
-++.+..+ + ....+|||.=.+-.....+.+|+.+||+..++=
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 23444322 2 234688888889999999999999999987653
No 165
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=58.92 E-value=33 Score=35.19 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=44.0
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCC------CHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 83 DGFKLLELVGLEMDLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 83 dGleLL~~Ir~~~~ipVIvlTa~~------d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+.+++++.++....+|+|+||-+. -.....++.++|+++.++-.+..+|....+..+.+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~ 142 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNL 142 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 356777777766789999888653 34568888999999999988888876666655533
No 166
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=58.89 E-value=89 Score=28.54 Aligned_cols=56 Identities=20% Similarity=0.086 Sum_probs=40.8
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 69 NFDLVISDVYMPDMDG-------FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 69 ~pDLVIlDi~MPdmdG-------leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
..|.|.++-..+...+ ...+..++....+||++..+-...+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 4788888877664332 2334445556789999988888878899999999987754
No 167
>PRK07695 transcriptional regulator TenI; Provisional
Probab=58.48 E-value=94 Score=29.94 Aligned_cols=67 Identities=13% Similarity=0.242 Sum_probs=47.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
.+.+.+++.++.+. ..|.|++....|. ..|++.++.+.....+||+.+-+- +.+.+.+++..|++.+
T Consensus 101 s~~s~e~a~~a~~~---Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEKN---GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHHc---CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 45667776655432 4888887654332 236778887765567999988777 7888999999999877
No 168
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=58.31 E-value=59 Score=30.84 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=51.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC-------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC--QYEVTVTN-------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~--gy~V~~a~-------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~ 93 (529)
+++|.++-..+.+.+.+...|++. +.+++... ...+.++.+.+. .||+|++-+.+|... .++...+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVGLGAPKQE--LWIARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHHH
Confidence 589999999999999998888763 55555422 123345666655 499999999999754 34444443
Q ss_pred CCCCcEEEEec
Q 009670 94 EMDLPVVMLSA 104 (529)
Q Consensus 94 ~~~ipVIvlTa 104 (529)
....+|++-.+
T Consensus 122 ~l~~~v~~~vG 132 (171)
T cd06533 122 RLPVPVAIGVG 132 (171)
T ss_pred HCCCCEEEEec
Confidence 33455655443
No 169
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=57.92 E-value=1.2e+02 Score=29.28 Aligned_cols=68 Identities=24% Similarity=0.190 Sum_probs=44.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
+|..||.++.....+++-++..++. +. ...+..+++..+......+|+|++|--.....-.++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999988877653 33 44566566554432222379999996444333344555553
No 170
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=57.86 E-value=85 Score=27.16 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=15.4
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC
Q 009670 30 DDDQTCLKILEKFLRECQYEVTVTN 54 (529)
Q Consensus 30 DDd~~v~~~L~~~Le~~gy~V~~a~ 54 (529)
|.+......+.+.|...||++....
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEch
Confidence 4454445555566667788887544
No 171
>PLN02591 tryptophan synthase
Probab=57.32 E-value=1.9e+02 Score=29.43 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=62.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE-EE-C-CHHHHHHHHHhcCCCceEEEEecCCCC------CCHHHHHHHHhcCCC
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVT-VT-N-RAITALKMLRENRNNFDLVISDVYMPD------MDGFKLLELVGLEMD 96 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~-~a-~-sa~eALe~L~e~~~~pDLVIlDi~MPd------mdGleLL~~Ir~~~~ 96 (529)
|+|.|-...-...+...+++.|...+ .+ . +..+=++.+.+....+=-++.=..-.+ .+-.++++.++...+
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 189 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTD 189 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCC
Confidence 56666666666677777777787744 33 2 223334444444322322211110111 122345677777789
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
+||++=.+-.+.+.+.++.++||++.++-.
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 999988888889999999999999998864
No 172
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=57.27 E-value=1.7e+02 Score=30.00 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcE------eEeCCCCHHHHHHHHHHHHHhc
Q 009670 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACD------YLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 86 eLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~D------YL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+.+..++...++|||..-+-.+.+.+.+++..||+. ++.+|.-..++.+-+.+++..+
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 556666666679999999999999999999999876 4567755666666666666554
No 173
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.21 E-value=1.2e+02 Score=33.13 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=62.2
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC-----------CC
Q 009670 22 IGMRVLAVDD----DQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD-----------MD 83 (529)
Q Consensus 22 ~~mrVLIVDD----d~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-----------md 83 (529)
.+..|++||- ...+.+.++.+=+.. +..+. -+.+.++|..+++. ..|.|.+-+.--. ..
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 3677888874 223333333332222 23333 46788888888764 4888875432110 11
Q ss_pred HHHHH---HHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 84 GFKLL---ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 84 GleLL---~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
-+..+ ..+.....+|||.=.+-.....+.+|+.+||+..++=
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 23333 3332345689999999999999999999999998764
No 174
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=56.89 E-value=53 Score=32.15 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC-CcEeEe
Q 009670 56 AITALKMLRENRNNFD-LVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG-ACDYLL 124 (529)
Q Consensus 56 a~eALe~L~e~~~~pD-LVIlDi~MPdm-dG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~G-A~DYL~ 124 (529)
..+..+.+.+. .++ ++++|+..-++ .| +++++.+.....+|||.-.+-.+.+.+.++++.| |+..++
T Consensus 148 ~~e~~~~~~~~--g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDA--GVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhc--CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 35555555543 356 78888765432 34 6777777665669999999999999999999988 888875
No 175
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=56.71 E-value=37 Score=33.98 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=42.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHh-cCCCceEEEEecCCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRE-NRNNFDLVISDVYMP 80 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~~a~sa~eALe~L~e-~~~~pDLVIlDi~MP 80 (529)
.|..-++.-+|-++...+..++.+++.|+. |..... -+|++.+.. ..+.+|+||+|..-+
T Consensus 81 l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 81 LPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChh
Confidence 443458999999999999999999998764 443331 344444443 234699999998544
No 176
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.50 E-value=67 Score=33.47 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=58.7
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------------HHhcCCCceEEEEecCCCCCCHH
Q 009670 24 MRVLAV--DDDQTCL---KILEKFLRECQYEVTVTNRAITALKM-------------LRENRNNFDLVISDVYMPDMDGF 85 (529)
Q Consensus 24 mrVLIV--DDd~~v~---~~L~~~Le~~gy~V~~a~sa~eALe~-------------L~e~~~~pDLVIlDi~MPdmdGl 85 (529)
|+|.|+ -+.+... ..+..+|++.|+++.........+.. .......+|+||+ -|.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 677777 2334444 45555677778888765433222210 0111123677776 377884
Q ss_pred HHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 86 KLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 86 eLL~~Ir--~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|+..+ ....+||+=+- .|=.+||. .++++++...+.++++.
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNG 120 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcC
Confidence 333222 23478888553 35567776 68889999999998865
No 177
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=56.27 E-value=45 Score=31.88 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecC
Q 009670 41 KFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAY 105 (529)
Q Consensus 41 ~~Le~~gy~V~~---a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdG-------leLL~~Ir~-----~~~ipVIvlTa~ 105 (529)
+.+++.+..+.. ..+..+.++.+.. .+|.|+++-.-|+..| ++.++.++. .+.+||++.-+-
T Consensus 98 ~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI 174 (210)
T TIGR01163 98 QLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGV 174 (210)
T ss_pred HHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCc
Confidence 444445555332 2334555555432 2677777665554433 333333321 123566555554
Q ss_pred CCHHHHHHHHhcCCcEeEeC
Q 009670 106 SDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 106 ~d~e~v~~al~~GA~DYL~K 125 (529)
..+.+.++++.||+.+++-
T Consensus 175 -~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 175 -NDDNARELAEAGADILVAG 193 (210)
T ss_pred -CHHHHHHHHHcCCCEEEEC
Confidence 4688889899999988664
No 178
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=55.85 E-value=1.4e+02 Score=25.98 Aligned_cols=75 Identities=11% Similarity=-0.014 Sum_probs=40.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhc--CCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLREN--RNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~sa~eALe~L~e~--~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
|||.|+-| +..... ++-.|.+ +..+.+.+++.+.+++. ++++.+|++.=.+-..= -+.++.+......|+|
T Consensus 1 mkIaVIGD-~dtv~G----FrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i-~e~i~~~~~~~~~P~i 74 (100)
T PRK02228 1 MEIAVIGS-PEFTTG----FRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKL-PRRLRRTLEESVEPTV 74 (100)
T ss_pred CEEEEEeC-HHHHHH----HHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhh-HHHHHHHHhcCCCCEE
Confidence 68889988 443333 3345776 44466666666665542 34688888876543211 1233332234456755
Q ss_pred EEec
Q 009670 101 MLSA 104 (529)
Q Consensus 101 vlTa 104 (529)
+.-.
T Consensus 75 i~IP 78 (100)
T PRK02228 75 VTLG 78 (100)
T ss_pred EEEC
Confidence 4443
No 179
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=55.78 E-value=1.3e+02 Score=31.68 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=57.9
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 009670 23 GMRVLAVDD----DQTCLKILEKFLRECQ-YEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (529)
Q Consensus 23 ~mrVLIVDD----d~~v~~~L~~~Le~~g-y~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (529)
+.++++||- .+...+.++.+=+... ..|. .+.+.+.|..+++. ..|.|.+.+ -|+ ..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCCC
Confidence 567787763 2334444443333322 3443 35677788777653 478887632 111 11
Q ss_pred HHHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 84 GFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 84 GleLL~~I---r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
-+.++..+ .....+|||.--+-.+...+.+++.+||+...+
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 22333222 223468988777888889999999999998866
No 180
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.75 E-value=1.2e+02 Score=33.63 Aligned_cols=98 Identities=11% Similarity=0.152 Sum_probs=54.9
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec--CCC-CCCHHHHHH-HHhc--
Q 009670 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV--YMP-DMDGFKLLE-LVGL-- 93 (529)
Q Consensus 23 ~mrVLIVDDd~~v---~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi--~MP-dmdGleLL~-~Ir~-- 93 (529)
+.+|++++-|+.- ...++.+.+..+..+..+.+..++.+.++.. .+|+||+|. .++ +.+.++-+. .++.
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~ 329 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDTAGYSHRNLEQLERMQSFYSCFG 329 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeCCCCCccCHHHHHHHHHHHHhhc
Confidence 4689999887622 2234444445566666666667777777642 599999996 222 112232222 2222
Q ss_pred --CCCCcEEEEecCCCHHHHHHHHh----cCCcEe
Q 009670 94 --EMDLPVVMLSAYSDTKLVMKGIN----HGACDY 122 (529)
Q Consensus 94 --~~~ipVIvlTa~~d~e~v~~al~----~GA~DY 122 (529)
.+.-.++++++....+...++++ .|++..
T Consensus 330 ~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~gl 364 (432)
T PRK12724 330 EKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRI 364 (432)
T ss_pred CCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEE
Confidence 12235677777776655555542 455554
No 181
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=55.74 E-value=2.4e+02 Score=30.47 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=56.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-HHhcCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-LVGLEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~-~Ir~~~~ipVI 100 (529)
-+|+.+|=++...+.++.-++..+.+ +. ...++...+ ......+|+|++|- ++. ...++. .++....--++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l---~~~~~~fDvIdlDP--fGs-~~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL---RYRNRKFHVIDIDP--FGT-PAPFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH---HHhCCCCCEEEeCC--CCC-cHHHHHHHHHhcccCCEE
Confidence 47999999999999999988776543 33 224444443 33223599999996 342 234554 33333334588
Q ss_pred EEecCCCHHH----HHHHH-hcCCcE
Q 009670 101 MLSAYSDTKL----VMKGI-NHGACD 121 (529)
Q Consensus 101 vlTa~~d~e~----v~~al-~~GA~D 121 (529)
.+|+.+.... ...++ ++|+.-
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~~ 169 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGANP 169 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCcc
Confidence 8886654442 34455 678654
No 182
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.65 E-value=1.5e+02 Score=28.05 Aligned_cols=78 Identities=12% Similarity=0.180 Sum_probs=52.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC--QYEVTVTNR-------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~--gy~V~~a~s-------a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~ 93 (529)
+.+|.++-..+.+.+.+...|++. +..++-+.+ .++.++.+... .||+|++-+.+|... .++...+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~~ 123 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGAPKQE--RWIARHRQ 123 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHHH
Confidence 589999999999999999988763 566664433 34455555554 499999999998644 34554444
Q ss_pred CCCCcEEEEec
Q 009670 94 EMDLPVVMLSA 104 (529)
Q Consensus 94 ~~~ipVIvlTa 104 (529)
.-..+|++-.+
T Consensus 124 ~l~~~v~i~vG 134 (172)
T PF03808_consen 124 RLPAGVIIGVG 134 (172)
T ss_pred HCCCCEEEEEC
Confidence 44455444433
No 183
>PRK14098 glycogen synthase; Provisional
Probab=55.22 E-value=91 Score=34.57 Aligned_cols=113 Identities=9% Similarity=0.060 Sum_probs=59.8
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDDQ-TCLKILEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~-~v~~~L~~~Le~~gy~V~~--a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
+++++|+.+-+ .....++.+.++.+-.|.. ..+..++.+++.. .|++++=-. -+.-|+..++.+. ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~-~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGK-IESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCC-CCCchHHHHHHHh--CCCCe
Confidence 35666665533 2344555555443323332 2333334444432 567664221 1233555555433 34555
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|+...-.-.+.+.+....+.++|+..|.+.++|..++.+++..
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALAL 451 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHH
Confidence 5443322223333333346789999999999999999987654
No 184
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.96 E-value=1.4e+02 Score=32.99 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=36.7
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEec
Q 009670 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENR--NNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~--~~pDLVIlDi 77 (529)
+.+|.+++-|+. ....++.+-+..++.+..+.+..+..+.++... ..+|+||+|.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 568999987764 334455555567888877777766555554332 1489999996
No 185
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=54.62 E-value=2.2e+02 Score=30.51 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=67.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEEC--CHHHHHHHHHhcCCCceEEEEecCCC---CCC--HHHHHHHHhc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE--VTVTN--RAITALKMLRENRNNFDLVISDVYMP---DMD--GFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MP---dmd--GleLL~~Ir~ 93 (529)
.+++.||.|.+. ...++..+++.+.. |.... +.++..+++.. .|+.++=.... +.+ |..+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 367777776654 34566666665542 44332 34555556543 57777633221 123 355666553
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
..+|||.. .... ..+.++.|.++++..|-+.++|.+++..++.
T Consensus 327 -~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 -VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred -CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 35788753 3332 4566788999999999999999999998875
No 186
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=54.59 E-value=41 Score=33.76 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=71.3
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDD-DQTCLKILEKFLRECQYEVT---VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDD-d~~v~~~L~~~Le~~gy~V~---~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
..+|=.|-. .....+.+.+-|.++||+|. ++++...|.+++++++-.|-+++-|-.|++.+|++. ..|++-
T Consensus 39 ~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT-----s~pn~V 113 (262)
T KOG3040|consen 39 HVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT-----SDPNCV 113 (262)
T ss_pred CceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC-----CCCCeE
Confidence 355655543 35566677788889999877 568888999999988778999999999999999642 356665
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
||-+.. +-|+.+.|..+.+-++..++
T Consensus 114 Viglap--------------------e~F~y~~ln~AFrvL~e~~k 139 (262)
T KOG3040|consen 114 VIGLAP--------------------EGFSYQRLNRAFRVLLEMKK 139 (262)
T ss_pred EEecCc--------------------ccccHHHHHHHHHHHHcCCC
Confidence 553332 34788888888888877643
No 187
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.54 E-value=71 Score=31.97 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdm-dG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+.++.+.+.. --.++++|+..-++ .| +++++.+.....+|||+-.+-.+.+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44445544432 13699999977653 34 5667777666789999999999999999999999999876
No 188
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=54.44 E-value=39 Score=34.75 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=52.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH-hcCCCCcEEEEec
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV-GLEMDLPVVMLSA 104 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I-r~~~~ipVIvlTa 104 (529)
|-+.-.++.+...+..+|....|.+..+.++++.++.++.+++.+|++|+..... -..++..+ ....-+|+|++..
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g~LLPaVil~~ 79 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQGILLPAVILGS 79 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT----EEEES-
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcCccccEEEEec
Confidence 4455566788888999998888999999999999999998888899999987554 34455544 3445679888865
Q ss_pred C
Q 009670 105 Y 105 (529)
Q Consensus 105 ~ 105 (529)
.
T Consensus 80 ~ 80 (283)
T PF07688_consen 80 S 80 (283)
T ss_dssp -
T ss_pred C
Confidence 3
No 189
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.02 E-value=1.2e+02 Score=31.47 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=61.6
Q ss_pred EEEEeCCHHHHHHHHHHHHh---C-C-CeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-C-CCC
Q 009670 26 VLAVDDDQTCLKILEKFLRE---C-Q-YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-E-MDL 97 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~---~-g-y~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~-~~i 97 (529)
|||-|.+-... .+...++. . . ..| +.+.+.+++.+.++. .+|+|.+|-..|+ +--+.++.++. . ..-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 78888886555 56666543 1 1 223 367899999999874 3899999976543 22223333432 1 122
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
..|..++--+.+.+.+..+.|++.+-+
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 467788888999999999999876643
No 190
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=53.35 E-value=2.5e+02 Score=28.17 Aligned_cols=109 Identities=19% Similarity=0.251 Sum_probs=62.1
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 23 GMRVLAVDDDQT---CLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~---v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
.++++||.+.+. ....+...+++.+. .|.......+..+++.. .|++|+=..-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 356666654432 33333444444333 24444333344444432 56666543234445666777553 357
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
|||+. .... ..+.+..|.++++..+-+.+++..++..++.
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 88754 3332 3456677779999999999999999865543
No 191
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=53.35 E-value=26 Score=35.85 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEecCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN-------RAITALKMLRENRNNFDLVISDVYM 79 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~-------sa~eALe~L~e~~~~pDLVIlDi~M 79 (529)
|||||+...-.+...+...|+..++++.... +.++..++++..+ ||+||-=..+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEecccee
Confidence 8999999999999999999998888887663 5555566666654 9988765443
No 192
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.21 E-value=65 Score=33.57 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=56.5
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCC
Q 009670 26 VLAVDDDQTCLKILEKFLR----ECQY--EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDL 97 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le----~~gy--~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~i 97 (529)
|||-|.+-...-.+...++ ..++ .|. .+.+.+||.+++.. .+|+|.+|-.-| .+=-+.++.++. .+.+
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~-e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPV-DLMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHHHhcCCCe
Confidence 6666665444433444442 2443 344 56889999999864 489999993222 111122333332 3455
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+ |..++--+.+.+.+....|++..-+
T Consensus 245 ~-leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 245 K-IEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 4 5566667788888888999877643
No 193
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=53.19 E-value=1e+02 Score=32.39 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=54.2
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEec-CC----C-CC-CHHHHHHHHhcCCCCcEEEEecCCCHHHHH
Q 009670 41 KFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDV-YM----P-DM-DGFKLLELVGLEMDLPVVMLSAYSDTKLVM 112 (529)
Q Consensus 41 ~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi-~M----P-dm-dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~ 112 (529)
..++..|..|. .+.+.++|..+++. .+|.|++-= .- . +. +-+.|+..++...++|||.--+-.+...+.
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ia 206 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIA 206 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHH
Confidence 44666787755 78999999988764 389888752 11 1 12 245666677666779999999999999999
Q ss_pred HHHhcCCcEeEeC
Q 009670 113 KGINHGACDYLLK 125 (529)
Q Consensus 113 ~al~~GA~DYL~K 125 (529)
.++.+||+....=
T Consensus 207 aal~lGA~gV~~G 219 (330)
T PF03060_consen 207 AALALGADGVQMG 219 (330)
T ss_dssp HHHHCT-SEEEES
T ss_pred HHHHcCCCEeecC
Confidence 9999999998764
No 194
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=52.44 E-value=18 Score=35.13 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=35.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISD 76 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlD 76 (529)
|||||.+...-..+..+|++.|+++.+....+..++.+... .||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEEC
Confidence 89999999999999999999999888765443333333332 48877773
No 195
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=52.36 E-value=49 Score=34.87 Aligned_cols=63 Identities=27% Similarity=0.484 Sum_probs=49.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCCe---EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 009670 25 RVLAVDDDQTCLKILEKFLRE--CQYE---VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~--~gy~---V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~ 89 (529)
.|+++|-|..+.+.=+.++.. +||+ |. ...++...++.+.++ .+|+||+|..=|.+.+..+..
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC--CceEEEEecCCccchHHHHHH
Confidence 488999999999988888875 5664 44 456888888887655 499999999999888877653
No 196
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=52.00 E-value=67 Score=36.72 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=30.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 70 FDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.|++++-..-+ .+-..++..++ ..++++||+.+.. .+...+..+.||+..+.
T Consensus 465 A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~IiaRa~~--~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 465 AEAIVITCNEP-EDTMKIVELCQQHFPHLHILARARG--RVEAHELLQAGVTQFSR 517 (601)
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEEEEeCC--HHHHHHHHhCCCCEEEc
Confidence 45555443221 22344455444 4678888877654 45666777899987764
No 197
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=51.78 E-value=2.3e+02 Score=27.41 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=63.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.++++|+.+.+.- ..++..+++.+. .|......++..+++.. .|++|.-.... .-|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~e-~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPER-EALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRFE-GFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCCH-HHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCcccc-ccCHHHHHHHH--cCCCEE
Confidence 4677777654432 233344444433 24333333455555543 67877765543 33666777653 357887
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+....... .+.+..|..+++.++.+.+++.+.+..++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 54322222 234566678999999999999999998864
No 198
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=51.64 E-value=1.2e+02 Score=29.71 Aligned_cols=99 Identities=24% Similarity=0.372 Sum_probs=52.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCC-------------eEEEECCHHHHHHHHHhcC-CCceEEEEecC-CCCCCHHHH
Q 009670 25 RVLAVDDDQTCLKILEKFLRE--CQY-------------EVTVTNRAITALKMLRENR-NNFDLVISDVY-MPDMDGFKL 87 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~--~gy-------------~V~~a~sa~eALe~L~e~~-~~pDLVIlDi~-MPdmdGleL 87 (529)
+-.||..-+..++++++++.- .|+ .|..+.+.++|++.+++.. ..|-+|.+|.. -|+.=.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 567888888888888888752 222 2778999999999987743 26899999998 344445554
Q ss_pred HH-HHhcCCCCcEEEE--ecCCCHHHHHHHHhcCCcEeEeCCCCH
Q 009670 88 LE-LVGLEMDLPVVML--SAYSDTKLVMKGINHGACDYLLKPVRM 129 (529)
Q Consensus 88 L~-~Ir~~~~ipVIvl--Ta~~d~e~v~~al~~GA~DYL~KP~~~ 129 (529)
++ ++ ...+-|++++ |+.+=.+.+ + ..+||++.|+.-
T Consensus 124 lr~~l-~~~~~P~LllFGTGwGL~~ev---~--~~~D~iLePI~g 162 (185)
T PF09936_consen 124 LRRML-EEEDRPVLLLFGTGWGLAPEV---M--EQCDYILEPIRG 162 (185)
T ss_dssp HHHHH-HH--S-EEEEE--TT---HHH---H--TT-SEEB--TTT
T ss_pred HHHHH-hccCCeEEEEecCCCCCCHHH---H--HhcCeeEccccc
Confidence 54 44 2344576555 444433333 2 357999999753
No 199
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=51.31 E-value=2.5e+02 Score=28.83 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEe------EeCCCCHHHHHHHHHHHHHh
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY------LLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DY------L~KP~~~eeL~~~l~~vlr~ 142 (529)
+++++.++...++|||...+-.+.+.+.+++..||+.. +..|.-+.++.+-+.+.+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 56777776666899999999999999999999998654 33455455555555555544
No 200
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=51.16 E-value=74 Score=30.74 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=33.8
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcC---CCC-cEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 70 FDLVISDVYMPDMDG-------FKLLELVGLE---MDL-PVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 70 pDLVIlDi~MPdmdG-------leLL~~Ir~~---~~i-pVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+|.|+++-.-|+.+| ++.++.++.. ..+ ++|++.+--..+.+.++++.|++.++.-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 677777765565444 2333333221 123 4565666666688888889999977554
No 201
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=51.14 E-value=31 Score=33.78 Aligned_cols=53 Identities=38% Similarity=0.523 Sum_probs=39.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
-++++||-+......+++-++..+. ++. ...++..++..+... ..+|+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 5799999999999999999987763 333 335566666655432 2499999995
No 202
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=50.89 E-value=81 Score=31.42 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 56 AITALKMLRENRNNFDLVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 56 a~eALe~L~e~~~~pDLVIlDi~MPdm-dG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
..+.++.+... .-.++++|+..-++ .| +++++.+.....+|||+-.+-...+.+.++++.||+..++
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 55566666543 12599999976542 23 5667766656789999999999999999999999998875
No 203
>PRK04302 triosephosphate isomerase; Provisional
Probab=50.74 E-value=2.6e+02 Score=27.54 Aligned_cols=93 Identities=18% Similarity=0.130 Sum_probs=54.4
Q ss_pred HhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEecC--CC---C-----CCH-HHHHHHHhc-CCCCcEEEEecCCCHHH
Q 009670 44 RECQYEVTV-TNRAITALKMLRENRNNFDLVISDVY--MP---D-----MDG-FKLLELVGL-EMDLPVVMLSAYSDTKL 110 (529)
Q Consensus 44 e~~gy~V~~-a~sa~eALe~L~e~~~~pDLVIlDi~--MP---d-----mdG-leLL~~Ir~-~~~ipVIvlTa~~d~e~ 110 (529)
.+.|..+.. +.+.+++.. +.+. .+|+|-..-. +. + ..+ .++++.++. ..++|||.-.+-...+.
T Consensus 111 ~~~Gl~~I~~v~~~~~~~~-~~~~--~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~ 187 (223)
T PRK04302 111 KKLGLESVVCVNNPETSAA-AAAL--GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGED 187 (223)
T ss_pred HHCCCeEEEEcCCHHHHHH-HhcC--CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHH
Confidence 346887554 455555554 3332 3676653211 10 1 112 234455654 34789998888889999
Q ss_pred HHHHHhcCCcEeEeCC--CCHHHHHHHHHHH
Q 009670 111 VMKGINHGACDYLLKP--VRMEELKNTWQHV 139 (529)
Q Consensus 111 v~~al~~GA~DYL~KP--~~~eeL~~~l~~v 139 (529)
+..+...||++.++-- +..+.+...++.+
T Consensus 188 ~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 188 VKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred HHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 9999999999997654 3334444444433
No 204
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=50.66 E-value=84 Score=29.78 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=48.4
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCC-------CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 51 TVTNRAITALKMLRENRNNFDLVISDVYMPDM-------DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 51 ~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm-------dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
..+.+.+++.++.+. .+|.|++.-..|.. -|++.++.+.....+||+.+-+-. .+.+.++.+.||++.-
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 377899997666543 48999988765532 388888877666669999998774 4567788899998864
No 205
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=50.44 E-value=1.9e+02 Score=28.15 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 55 RAITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+..+..+.+.+.. ++ +++.|+..-+. -.+++++.++...++|||.-.+-.+.+.+.++++.||++.++
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555554432 44 56677644322 236777777666689999999999999999999999999875
No 206
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=50.05 E-value=47 Score=34.67 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=48.1
Q ss_pred CHHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEeEeC-----CCCHHHHHHHHHHHHHhcc
Q 009670 83 DGFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 83 dGleLL~~Ir~~~~ipVI--vlTa~~d~e~v~~al~~GA~DYL~K-----P~~~eeL~~~l~~vlr~~~ 144 (529)
-++++++.+.....+||| ...+-...+.+..++++||+.+++= .-++.+....+...+..+.
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 478888877666679998 7777779999999999999998554 3477777777777776654
No 207
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.66 E-value=1.9e+02 Score=31.68 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=37.0
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEec
Q 009670 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENR--NNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v---~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~--~~pDLVIlDi 77 (529)
+.+|.+|+-|+.- ...++.+-+..++.+..+.+..+..+.++... ..+|+||+|.
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 5789999877642 34555555556777777777776655555432 2589999998
No 208
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=49.61 E-value=1.5e+02 Score=31.13 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHH
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l 136 (529)
.+..+++.. .|+.++ ...++.-|+.+++.+. ..+|||. |... ...+.+..|.++++..|.+.++|.+++
T Consensus 292 ~~~~~~l~~----adv~v~-~s~~e~~~~~llEAmA--~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i 360 (396)
T cd03818 292 DQYLALLQV----SDVHVY-LTYPFVLSWSLLEAMA--CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAAV 360 (396)
T ss_pred HHHHHHHHh----CcEEEE-cCcccccchHHHHHHH--CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHHH
Confidence 455555543 455554 2235545566777553 3578875 3333 245667788999999999999999999
Q ss_pred HHHHHh
Q 009670 137 QHVIRR 142 (529)
Q Consensus 137 ~~vlr~ 142 (529)
..++..
T Consensus 361 ~~ll~~ 366 (396)
T cd03818 361 IELLDD 366 (396)
T ss_pred HHHHhC
Confidence 988753
No 209
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=49.55 E-value=1.2e+02 Score=32.98 Aligned_cols=105 Identities=13% Similarity=0.266 Sum_probs=61.3
Q ss_pred EeCCHHHHHHHHHHHHhCCCe----EEEEC-----------------------CHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 29 VDDDQTCLKILEKFLRECQYE----VTVTN-----------------------RAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 29 VDDd~~v~~~L~~~Le~~gy~----V~~a~-----------------------sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
++++....+.+++.+++.||+ +...- +..+++++++...++++++.+.==++.
T Consensus 209 ~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~ 288 (408)
T cd03313 209 LSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDE 288 (408)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCC
Confidence 356777788888888877553 33222 337888877664334778777655554
Q ss_pred CCHHHHHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcE-eEeCCCCHHHHHH
Q 009670 82 MDGFKLLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACD-YLLKPVRMEELKN 134 (529)
Q Consensus 82 mdGleLL~~Ir~~~~ipVIvlTa~---~d~e~v~~al~~GA~D-YL~KP~~~eeL~~ 134 (529)
.| ++-.+.++.....++.++... .+.....++++.|+++ +++||-..-=|-.
T Consensus 289 ~D-~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite 344 (408)
T cd03313 289 DD-WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTE 344 (408)
T ss_pred cC-HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHH
Confidence 44 333333433321133334433 3578888899888765 5678865433333
No 210
>PRK14974 cell division protein FtsY; Provisional
Probab=49.39 E-value=2.5e+02 Score=29.86 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=51.1
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECC-------HHHHHHHHHhcCCCceEEEEecC--CCCCCHHHHHHH
Q 009670 23 GMRVLAVDDDQ---TCLKILEKFLRECQYEVTVTNR-------AITALKMLRENRNNFDLVISDVY--MPDMDGFKLLEL 90 (529)
Q Consensus 23 ~mrVLIVDDd~---~v~~~L~~~Le~~gy~V~~a~s-------a~eALe~L~e~~~~pDLVIlDi~--MPdmdGleLL~~ 90 (529)
+.+|++++-|. .....++.+.+..|..+..... ..++++.++.. .+|+||+|.. ++ .-.++++.
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTaGr~~--~~~~lm~e 243 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTAGRMH--TDANLMDE 243 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECCCccC--CcHHHHHH
Confidence 46888888773 3334555556666766553322 12444444433 4899999973 22 12233332
Q ss_pred ---H-h-cCCCCcEEEEecCCCHHHHHHH--H--hcCCcEeEe
Q 009670 91 ---V-G-LEMDLPVVMLSAYSDTKLVMKG--I--NHGACDYLL 124 (529)
Q Consensus 91 ---I-r-~~~~ipVIvlTa~~d~e~v~~a--l--~~GA~DYL~ 124 (529)
+ + ..++..++++.+....+....+ + ..+++.++.
T Consensus 244 L~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 244 LKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 2 2 2455556666665544433322 2 256666543
No 211
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=49.24 E-value=91 Score=35.83 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
+++.++|.|+...+.++ +.|+.+..-+ +-.+.++... -++.|++|+-..-++ .-..++...+ .+++++||+
T Consensus 424 ~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~ag--i~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 424 VKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAG--AAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhcC--CCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEE
Confidence 45566666655433332 2355544321 1222232221 123566665542221 2334444444 467888877
Q ss_pred EecCCCHHHHHHHHhcCCcEeE
Q 009670 102 LSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL 123 (529)
.+.. .+...+..+.||+...
T Consensus 497 Ra~d--~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 497 RARD--VDHYIRLRQAGVEKPE 516 (621)
T ss_pred EECC--HHHHHHHHHCCCCEEe
Confidence 6643 4556666788888654
No 212
>PRK10742 putative methyltransferase; Provisional
Probab=48.87 E-value=50 Score=33.80 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=41.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------CC----eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC------QY----EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDM 82 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~------gy----~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm 82 (529)
|.+|..||-++.+...++.-|++. +- ++. ...+..+.+.. ....||+|++|-.-|..
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCC
Confidence 568999999999999999999873 21 233 23555555543 33369999999988863
No 213
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.72 E-value=2.2e+02 Score=28.54 Aligned_cols=88 Identities=8% Similarity=-0.046 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCC------HHHHHHHHhcC-CCCcEEEEecC
Q 009670 36 LKILEKFLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMPDMD------GFKLLELVGLE-MDLPVVMLSAY 105 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~~a~---sa~eALe~L~e~~~~pDLVIlDi~MPdmd------GleLL~~Ir~~-~~ipVIvlTa~ 105 (529)
...+...+++.|.++..+- +..+.++.+.... ..++++ -.+|+.. -.+.+++++.. .+.||++=.+-
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI 194 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGL 194 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCc
Confidence 3445566677788755432 2234444433332 456666 4566521 13344555543 34676655556
Q ss_pred CCHHHHHHHHhcCCcEeEeCC
Q 009670 106 SDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 106 ~d~e~v~~al~~GA~DYL~KP 126 (529)
.+.+.+.+++++||+.++.-.
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECH
Confidence 588889999999999998864
No 214
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=48.31 E-value=83 Score=31.36 Aligned_cols=59 Identities=24% Similarity=0.459 Sum_probs=44.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEecC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN--RNNFDLVISDVY 78 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~--~~~pDLVIlDi~ 78 (529)
.|..-+|.-+|-++...+..++.+++.|+. +. ...++.+.+..+... ...||+|++|..
T Consensus 90 ~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 90 LPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 344568999999999999999999988764 44 457777777766433 236999999974
No 215
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=47.63 E-value=1.3e+02 Score=30.77 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=48.5
Q ss_pred hCCCeEEEECCH-----HHHH---H-HHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHH
Q 009670 45 ECQYEVTVTNRA-----ITAL---K-MLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGI 115 (529)
Q Consensus 45 ~~gy~V~~a~sa-----~eAL---e-~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al 115 (529)
+.++++.++.++ +++- . ++++. +||++|.=---|..-|-.-.|.+-...++|.|+++........ +++
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~--~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l 105 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEW--KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK-DAM 105 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhh--CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH-HHH
Confidence 346777776654 2222 2 33444 4898887554444556555665444567899999988877655 677
Q ss_pred hcCCcEeEeCC
Q 009670 116 NHGACDYLLKP 126 (529)
Q Consensus 116 ~~GA~DYL~KP 126 (529)
+..-.+|++-+
T Consensus 106 ~~~g~GYIivk 116 (277)
T PRK00994 106 EEQGLGYIIVK 116 (277)
T ss_pred HhcCCcEEEEe
Confidence 55555665443
No 216
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=47.50 E-value=2.7e+02 Score=26.96 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHH
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l 136 (529)
++..+++.. .|++|+-... +.-|..+++.+. ..+|||+... .. ..+.+..+-.+++..+.+.+++.+.+
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i 335 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAI 335 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHH
Confidence 445555442 4666654333 334555666543 3568775433 22 33445557888999999999999999
Q ss_pred HHHHH
Q 009670 137 QHVIR 141 (529)
Q Consensus 137 ~~vlr 141 (529)
..++.
T Consensus 336 ~~~~~ 340 (374)
T cd03801 336 LRLLD 340 (374)
T ss_pred HHHHc
Confidence 98864
No 217
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=47.44 E-value=1.9e+02 Score=29.54 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=64.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQ--YEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~g--y~V~~a--~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~i 97 (529)
.+||-||--...........+...+ ++++.+ .+.+.|.+..++.. +.-+..|+ -+.+.. ..++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~~----------~~ll~~~~iD~ 70 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTDL----------EELLADPDIDA 70 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCCH----------HHHhcCCCCCE
Confidence 4788999876555555555555543 455533 45555555554432 22222222 123332 1344
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
-+|........+.+.+|+++|..=|+-||+ +.+|..+.+..+-+.
T Consensus 71 V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 71 VYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred EEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 445445566778899999999999999995 678877666665443
No 218
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=47.30 E-value=2e+02 Score=28.94 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCC-CCH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC-CcEeEe------C
Q 009670 57 ITALKMLRENRNNFD-LVISDVYMPD-MDG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG-ACDYLL------K 125 (529)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~MPd-mdG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~G-A~DYL~------K 125 (529)
.+..+.+.+. .+| +++.|+.--+ +.| +++++.++...++|||..-+-.+.+.+.++++.| |+..+. +
T Consensus 158 ~~~~~~l~~~--G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 158 VEWAKEVEKL--GAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHHc--CCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 3444444433 366 4454542211 122 5777777766789999999999999999999888 877443 2
Q ss_pred CCCHHHHHHHHH
Q 009670 126 PVRMEELKNTWQ 137 (529)
Q Consensus 126 P~~~eeL~~~l~ 137 (529)
-++.++++..++
T Consensus 236 ~~~~~~~~~~~~ 247 (254)
T TIGR00735 236 EITIGEVKEYLA 247 (254)
T ss_pred CCCHHHHHHHHH
Confidence 355555544443
No 219
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=47.28 E-value=1.3e+02 Score=37.36 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=67.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCC-CCCHH-HHHHHHh-c
Q 009670 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMP-DMDGF-KLLELVG-L 93 (529)
Q Consensus 24 mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a~---sa~eALe~L~e~~~~pDLVIlDi~MP-dmdGl-eLL~~Ir-~ 93 (529)
-+|++. |-|..=..++..+|+..||+|+-.. ..++.++.+++.+ +|+|-+-..|. .+..+ ++++.++ .
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 467776 5566666677778888999998553 4677888887765 99999887776 34443 3556664 3
Q ss_pred CCCCcEEEEecCCCHHHHHHHH--h-cCCcEeEeCCCC
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGI--N-HGACDYLLKPVR 128 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al--~-~GA~DYL~KP~~ 128 (529)
..+++|++=-+..+.+....-+ . .||+.|-.-...
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~~ 848 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDASR 848 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEecCHHH
Confidence 4567777665555555554322 2 388888654333
No 220
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=47.24 E-value=62 Score=30.83 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=35.0
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 70 FDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 70 pDLVIlDi~MPdmdG-------leLL~~Ir~-----~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+|.++++-..|+.+| ++.++.++. .+++||++.-+-. .+.+.++++.||+.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 688877766565433 333443322 2247776655554 588889999999988764
No 221
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=47.03 E-value=79 Score=32.91 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=47.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+.+.++|.++++. .+|+|++|- |...+--+.++.++. .+. .+|-.++--+.+.+.+....|++-+..
T Consensus 195 Ev~tleqa~ea~~a---gaDiI~LDn-~~~e~l~~av~~~~~~~~~-~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 195 EADTPKEAIAALRA---QPDVLQLDK-FSPQQATEIAQIAPSLAPH-CTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred ECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhccCCC-eEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 56899999999864 489999994 433233334444432 233 467788888999999998999876543
No 222
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=46.73 E-value=4.2e+02 Score=28.84 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=59.9
Q ss_pred HHHHHHhCCCeEEE----ECCHHHHHHHHHhcCCCceEEEEecCC----CCCCHHHHHHHHhcCCCCcEEEEecCCCHHH
Q 009670 39 LEKFLRECQYEVTV----TNRAITALKMLRENRNNFDLVISDVYM----PDMDGFKLLELVGLEMDLPVVMLSAYSDTKL 110 (529)
Q Consensus 39 L~~~Le~~gy~V~~----a~sa~eALe~L~e~~~~pDLVIlDi~M----PdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~ 110 (529)
+.+..++.|..+.. +.+..+..+.+.+. ..|.|.+.... ....+++.++.++...++||++..+- ..+.
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n 175 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAET 175 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHH
Confidence 33444456666543 22333333333322 37887665321 12456788887765556898877766 5678
Q ss_pred HHHHHhcCCcEe-----EeCCCCHHHHHHHHHHHHHh
Q 009670 111 VMKGINHGACDY-----LLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 111 v~~al~~GA~DY-----L~KP~~~eeL~~~l~~vlr~ 142 (529)
+.+++..||+.+ |.+.-++.+....++..+++
T Consensus 176 ~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 176 AAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 889999999966 44444556666666665544
No 223
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=46.60 E-value=1.7e+02 Score=30.42 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=61.0
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCCe--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 26 VLAVDDDQTCLKILEKFLRE----CQYE--VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~----~gy~--V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
|||=|.+-...-.++..+++ .+|. +. .+.+.+++.++++. .+|+|++|-.-|+ .--+.+++++ ...-.
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e-~~~~av~~l~-~~~~~ 235 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPE-ELKEAVKLLG-LAGRA 235 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHH-HHHHHHHHhc-cCCce
Confidence 66666666665557777754 3543 23 57899999999875 4899999965442 1222233321 23334
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
++=.|+.-+.+.+.+....|++.+-
T Consensus 236 ~lEaSGgIt~~ni~~yA~tGVD~IS 260 (280)
T COG0157 236 LLEASGGITLENIREYAETGVDVIS 260 (280)
T ss_pred EEEEeCCCCHHHHHHHhhcCCCEEE
Confidence 6667888888999888899987653
No 224
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=46.41 E-value=1.5e+02 Score=28.43 Aligned_cols=74 Identities=7% Similarity=-0.089 Sum_probs=52.7
Q ss_pred CCCeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 46 CQYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 46 ~gy~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.+..+ .-+.+.+|+.+.++. .+|.|-++- .+. .|.++++.++. .+++|++.+-+- +.+.+.+.++.||+..-
T Consensus 96 ~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~-~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~ 169 (190)
T cd00452 96 AGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEA-VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVG 169 (190)
T ss_pred cCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Ccc-cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEE
Confidence 34443 355688898888753 489988853 333 38999987764 456888877666 77889999999987765
Q ss_pred eC
Q 009670 124 LK 125 (529)
Q Consensus 124 ~K 125 (529)
.-
T Consensus 170 v~ 171 (190)
T cd00452 170 GG 171 (190)
T ss_pred Ec
Confidence 43
No 225
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=46.28 E-value=72 Score=29.55 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=43.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNR-AITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~s-a~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
.+.+|+|+.....+.+-+..+|.+.|..|+.+.. ..+..+.++ ..|+|++-..-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----hCCEEEEecCCCC
Confidence 4689999999999999999999999999998872 222223333 2799999886663
No 226
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=46.23 E-value=92 Score=31.63 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc---CCCceEEEEecC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN---RNNFDLVISDVY 78 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~---~~~pDLVIlDi~ 78 (529)
.|.+-+|.-+|-++.....-+..+++.|+. |. ...++.+.+..+... ...+|+||+|..
T Consensus 101 l~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 101 LPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 345568999999999999999999988763 44 457777777766432 236999999986
No 227
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.05 E-value=1.9e+02 Score=29.69 Aligned_cols=54 Identities=15% Similarity=0.330 Sum_probs=32.5
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH---HHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKM---LRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~---L~e~~~~pDLVIlDi 77 (529)
+.+|.+++-|+. ....++.+.+..++.+..+.+..+..+. +... ..+|+||+|.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt 162 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDT 162 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 356777766543 3344455555567887776665444333 3322 2589999997
No 228
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=45.72 E-value=28 Score=33.37 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=45.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCH--HHHHHHHhcCCCCcEEE
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY--MPDMDG--FKLLELVGLEMDLPVVM 101 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~--MPdmdG--leLL~~Ir~~~~ipVIv 101 (529)
|||||.....-..|..+|++.|++|.+..+..--++.++.. .||.||+-=. -|..++ ..+++.+ ...+||+=
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999899888765432122333333 3787776321 111222 2333332 34678876
Q ss_pred Ee
Q 009670 102 LS 103 (529)
Q Consensus 102 lT 103 (529)
+.
T Consensus 78 IC 79 (191)
T PRK06774 78 VC 79 (191)
T ss_pred EC
Confidence 64
No 229
>PLN02823 spermine synthase
Probab=45.67 E-value=48 Score=35.18 Aligned_cols=55 Identities=25% Similarity=0.366 Sum_probs=38.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-----QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-----gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP 80 (529)
..+|.+||=|+.+.+..++++... +-++. ...++.+.+ +.....+|+||+|+.-|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 468999999999999999988532 12333 345555544 44444699999997544
No 230
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=45.29 E-value=1.8e+02 Score=28.26 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=45.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe--CCCCHHHHHHHHHHH
Q 009670 72 LVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL--KPVRMEELKNTWQHV 139 (529)
Q Consensus 72 LVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~--KP~~~eeL~~~l~~v 139 (529)
|-++|...--...++.++.++...++||++...-.+...+..+++.||+..++ .-+..+++...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 44445443334566777777766789999876666667888999999999873 224445555555554
No 231
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=45.19 E-value=83 Score=31.88 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009670 34 TCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 34 ~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~ 113 (529)
.....|.++.++.|..+...--..++++.|.+. ++-+.=+.-.+.+-+.|++.+.. ...|||+=||....+.+.+
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~----~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~ 130 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEEL----GVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIER 130 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH----T-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHc----CCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHH
Confidence 344556677777898877665567777887653 34455555556788999998864 5679999999998888777
Q ss_pred HH----hcCCcEe
Q 009670 114 GI----NHGACDY 122 (529)
Q Consensus 114 al----~~GA~DY 122 (529)
|+ +.|..++
T Consensus 131 Av~~~~~~~~~~l 143 (241)
T PF03102_consen 131 AVEVLREAGNEDL 143 (241)
T ss_dssp HHHHHHHHCT--E
T ss_pred HHHHHHhcCCCCE
Confidence 65 3355554
No 232
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.08 E-value=1.7e+02 Score=31.69 Aligned_cols=90 Identities=18% Similarity=0.099 Sum_probs=51.4
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC-CCCCCHH--HHHHHHhc--CC
Q 009670 24 MRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY-MPDMDGF--KLLELVGL--EM 95 (529)
Q Consensus 24 mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~-MPdmdGl--eLL~~Ir~--~~ 95 (529)
.+|.+|..|.. ..+.++.+-+..|..+..+.+..+....+.+.. .+|+||+|.- +...|.. +.+..+.. .+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 46777776654 345566666667777777766666555555443 5899999973 3323332 23333321 12
Q ss_pred CCcEEEEecCCCHHHHHHH
Q 009670 96 DLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~a 114 (529)
.-.++|+++....+...+.
T Consensus 247 ~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 247 VQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred CeEEEEecCccChHHHHHH
Confidence 2347777777665554433
No 233
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=44.96 E-value=1.6e+02 Score=30.01 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=63.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
++++||.+.+... .++..+ .....+.-.-+.++..+++.. .|++++-.. +.-|+-+++.+. ..+|||...
T Consensus 222 ~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 6778887766532 233211 112222222345566666653 577776544 334566666553 357888754
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
. .. ..+.+..|..+++..|-+.++|.+++..++..
T Consensus 292 ~-~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 292 K-GG---ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred C-CC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 3 22 23445667889999999999999999888754
No 234
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=44.91 E-value=2.3e+02 Score=25.42 Aligned_cols=109 Identities=18% Similarity=0.265 Sum_probs=68.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNR--AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~s--a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
.++++|+.+.+... .+....+..+. .+..... ..+..++++. .|++++=... +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEccccccc-cccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 47788887443333 34444444443 3444433 3466666654 5787775555 445667777554 3456
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
||+ +.. ....+.+..+..+|+..+.+.+++..++.+++...
T Consensus 119 vI~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 664 332 23456778888999999999999999999998754
No 235
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=44.78 E-value=73 Score=32.09 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=42.9
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCC
Q 009670 24 MRVLAVDDDQ------TCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (529)
Q Consensus 24 mrVLIVDDd~------~v~~~L~~~Le~~gy~V~~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ 96 (529)
||||++-... .....+...|.+.|++|.... +.....+.+... .||+|.+-......-....+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH--cC
Confidence 6888886553 456667777888899877543 333334444433 599998754333333333333332 45
Q ss_pred CcEEEE
Q 009670 97 LPVVML 102 (529)
Q Consensus 97 ipVIvl 102 (529)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 676644
No 236
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=44.72 E-value=89 Score=29.89 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=56.9
Q ss_pred HHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEecCCC-C----CCHHHHHHHH-h--cCCCCcEEEEecCCCH
Q 009670 39 LEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYMP-D----MDGFKLLELV-G--LEMDLPVVMLSAYSDT 108 (529)
Q Consensus 39 L~~~Le~~gy~V~~a--~sa~eALe~L~e~~~~pDLVIlDi~MP-d----mdGleLL~~I-r--~~~~ipVIvlTa~~d~ 108 (529)
....|+..||.+... ......++.+.... ||.|-+|..+. . .....+++.+ . ...+++ |+.++-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK-VVAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-EEEEecCCH
Confidence 344456679987754 46666677777664 99999996543 1 2334455533 2 233444 457888888
Q ss_pred HHHHHHHhcCCc----EeEeCCCCH
Q 009670 109 KLVMKGINHGAC----DYLLKPVRM 129 (529)
Q Consensus 109 e~v~~al~~GA~----DYL~KP~~~ 129 (529)
+....+.+.|++ .|+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 888889999994 356677654
No 237
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=44.62 E-value=74 Score=30.52 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=44.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE-e-cCCCCCCH--HHHHHHHhcCCCCcEEE
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS-D-VYMPDMDG--FKLLELVGLEMDLPVVM 101 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl-D-i~MPdmdG--leLL~~Ir~~~~ipVIv 101 (529)
|||||.....-..+.++|++.|+++.+..+....++.+... .||.||+ . -.-|..++ .++++.. ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 89999999999999999999899877654322112223322 3886665 1 11222223 3344433 34678876
Q ss_pred Ee
Q 009670 102 LS 103 (529)
Q Consensus 102 lT 103 (529)
+.
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 64
No 238
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.07 E-value=2.4e+02 Score=28.24 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCce-EEEEecCC---CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc-CCcEeEe------C
Q 009670 57 ITALKMLRENRNNFD-LVISDVYM---PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH-GACDYLL------K 125 (529)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~M---PdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~-GA~DYL~------K 125 (529)
.+..+.+.+. .++ +++.|+.- ..+--+++++.+.....+|||.--+-.+.+.+.++++. ||+..+. .
T Consensus 156 ~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 156 VEWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 3444444433 355 66766542 11122667777766667999999999999999999974 9988776 2
Q ss_pred CCCHHHHHHHHH
Q 009670 126 PVRMEELKNTWQ 137 (529)
Q Consensus 126 P~~~eeL~~~l~ 137 (529)
-++.++++..++
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK02083 234 EITIGELKAYLA 245 (253)
T ss_pred CCCHHHHHHHHH
Confidence 355555554443
No 239
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=43.88 E-value=31 Score=33.09 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=26.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN 54 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~ 54 (529)
|||||||.....-..+.++|++.|+++.+..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 8999999888888889999999998877654
No 240
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=43.54 E-value=1.2e+02 Score=31.21 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=47.0
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH-HHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 51 TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF-KLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 51 ~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGl-eLL~~Ir~~-~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+.+.+.+++.+.++. .+|.|.+|-.-|. ++ ++++.++.. +++|++++- --+.+.+.+..+.||+.+..
T Consensus 188 Vev~t~eea~~A~~~---gaD~I~ld~~~p~--~l~~~~~~~~~~~~~i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 188 VEVDSLEEALAAAEA---GADILQLDKFSPE--ELAELVPKLRSLAPPVLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEcCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHHhccCCCceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 467889999888753 4899999966553 33 234444433 467766554 45778888999999988744
No 241
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=43.45 E-value=3.5e+02 Score=28.15 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=65.6
Q ss_pred cEEEEEeCC---H-HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCC
Q 009670 24 MRVLAVDDD---Q-TCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM 95 (529)
Q Consensus 24 mrVLIVDDd---~-~v~~~L~~~Le~~gy--~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~ 95 (529)
++++||.+. . .....++.+.+..+. .|.... ..++..+++.. .|+.++-.. .+.-|+.+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 666777531 1 334455666655544 244432 34555555543 577766433 3344666777554 3
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.+|||+... .. ..+.+..|..+++..|-+.+++.+++.+++.
T Consensus 326 G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 578886443 22 3345677888999999999999999988875
No 242
>PLN02476 O-methyltransferase
Probab=42.59 E-value=1.1e+02 Score=31.76 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=43.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEecC
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN--RNNFDLVISDVY 78 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~--~~~pDLVIlDi~ 78 (529)
|..-+|.-+|-++...+..+..+++.|+. |. ...++.+.|..+... ...||+||+|..
T Consensus 141 ~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 141 PESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 33457999999999999999999998875 44 457777777665321 236999999974
No 243
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=42.47 E-value=2.1e+02 Score=31.56 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=60.8
Q ss_pred CccEEEEEeC---CHH-HHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------C
Q 009670 22 IGMRVLAVDD---DQT-CLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------M 82 (529)
Q Consensus 22 ~~mrVLIVDD---d~~-v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd------------m 82 (529)
.+..+++||- +.. +.+.++.+-+.+ ...|. .+.+.++|..++.. ..|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCc
Confidence 3678888886 433 333333332232 33333 46778888877764 3777754321 11 1
Q ss_pred CHHHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 83 DGFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 83 dGleLL~~I---r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
-.+..+..+ .....+|||.=-+-.....+.+|+.+||+...+=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 123333322 2235789888888999999999999999988764
No 244
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=42.43 E-value=51 Score=35.80 Aligned_cols=65 Identities=31% Similarity=0.399 Sum_probs=47.8
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHH--HHHHhC------CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCC
Q 009670 17 IDKFPIGMRVLAVDDDQTCLKILE--KFLREC------QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83 (529)
Q Consensus 17 ~~~~p~~mrVLIVDDd~~v~~~L~--~~Le~~------gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmd 83 (529)
.-++|.-..|-.||=||.+.+.-+ ..|++. +-+|.++. ++|..+++...+.+|.||+|+.=|+..
T Consensus 307 llkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tp 379 (508)
T COG4262 307 LLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTP 379 (508)
T ss_pred HHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCc
Confidence 356887889999999999998888 566552 22455443 356777777666899999999777644
No 245
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=42.32 E-value=2.8e+02 Score=27.37 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=60.5
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEec------CCCCCCHHHHHHH
Q 009670 23 GMRVLAVDDD----QTCLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDV------YMPDMDGFKLLEL 90 (529)
Q Consensus 23 ~mrVLIVDDd----~~v~~~L~~~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi------~MPdmdGleLL~~ 90 (529)
|..|+-+|-- |..+..+-..+++.+ .+. -+.+.+|++...+. .+|+|=+-+ ...+...++|++.
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKEKY-QLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHH
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHH
Confidence 4456666632 222333444444433 544 45889999988764 489887643 1223356889987
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 91 Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
+... .+|||.=-....++.+.+++++||+..++--
T Consensus 140 l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 140 LVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp HHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred HHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 7654 7898888888999999999999999987653
No 246
>PLN02275 transferase, transferring glycosyl groups
Probab=42.10 E-value=3.3e+02 Score=28.57 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=64.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEC---CHHHHHHHHHhcCCCceEEEEec-CCC-CCCHHHHHHHHhcCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTN---RAITALKMLRENRNNFDLVISDV-YMP-DMDGFKLLELVGLEMD 96 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~---sa~eALe~L~e~~~~pDLVIlDi-~MP-dmdGleLL~~Ir~~~~ 96 (529)
+++.+||.|-+. +..+++.+++.+.+ +.... ..++.-+++.. .|+.++=. ..- ..=+..+++.+. ..
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA--~G 333 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFG--CG 333 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHH--CC
Confidence 589999998765 46777777776654 44322 34555555653 67776410 010 112455666543 46
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
+|||.. ..+. ..+.++.|.++|+.. +.++|.+++..+
T Consensus 334 ~PVVa~-~~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 334 LPVCAV-SYSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred CCEEEe-cCCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 799874 3333 456778899999986 578888877665
No 247
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.96 E-value=3.3e+02 Score=27.03 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=55.6
Q ss_pred HHHHhCCC-eEEEECCHHHHHHHHHhcCC-CceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhc
Q 009670 41 KFLRECQY-EVTVTNRAITALKMLRENRN-NFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINH 117 (529)
Q Consensus 41 ~~Le~~gy-~V~~a~sa~eALe~L~e~~~-~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa~~d~e~v~~al~~ 117 (529)
..|.+.+. -|....+.++|++.++...+ .+++| .+.|-.-++++.++.++ ..+++ +|-.-.-.+.+.+..++++
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a~~a 86 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQAIEA 86 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHHCCCC-EEEEeeccCHHHHHHHHHc
Confidence 44444443 35566788888887765432 35544 44445457999998775 44542 3333344566889999999
Q ss_pred CCcEeEeCC-CCHHHHHHHHH
Q 009670 118 GACDYLLKP-VRMEELKNTWQ 137 (529)
Q Consensus 118 GA~DYL~KP-~~~eeL~~~l~ 137 (529)
||+- ++-| ++. ++.+..+
T Consensus 87 GA~F-ivsP~~~~-~vi~~a~ 105 (212)
T PRK05718 87 GAQF-IVSPGLTP-PLLKAAQ 105 (212)
T ss_pred CCCE-EECCCCCH-HHHHHHH
Confidence 9965 4556 555 4444433
No 248
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=41.82 E-value=2.2e+02 Score=24.48 Aligned_cols=85 Identities=11% Similarity=0.025 Sum_probs=48.7
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceE-EEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 25 RVLAVDD--DQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDL-VISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 25 rVLIVDD--d~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDL-VIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
+|+++-. .......+...|...++.+....+............ .-|+ |++...--..+-+++++..+. ..+++|+
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iS~~g~~~~~~~~~~~a~~-~g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLT-PGDVVIAISFSGETKETVEAAEIAKE-RGAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCC-CCCEEEEEeCCCCCHHHHHHHHHHHH-cCCeEEE
Confidence 4555543 344555667777777887777766666554443322 2243 334443333344555655543 4689999
Q ss_pred EecCCCHHHH
Q 009670 102 LSAYSDTKLV 111 (529)
Q Consensus 102 lTa~~d~e~v 111 (529)
+|+..+....
T Consensus 93 iT~~~~~~l~ 102 (139)
T cd05013 93 ITDSANSPLA 102 (139)
T ss_pred EcCCCCChhH
Confidence 9998765433
No 249
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=41.65 E-value=2.2e+02 Score=31.29 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec-CCCCCCHHHHHH---HHhcCCCCc-EEEEecCCCHHHH
Q 009670 37 KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV-YMPDMDGFKLLE---LVGLEMDLP-VVMLSAYSDTKLV 111 (529)
Q Consensus 37 ~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi-~MPdmdGleLL~---~Ir~~~~ip-VIvlTa~~d~e~v 111 (529)
+.|+.+-+-.+..+..+.++.+..+.+.... .+|+||+|. .++..|...+-+ .+.....+- .+++++....+..
T Consensus 250 EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~-~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 250 EQLKTYADIMGVPLEVVYSPKELAEAIEALR-DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred HHHHHHHHHhCCceEEecCHHHHHHHHHHhh-cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 3455555556888999999988888777654 589999996 566667655443 233333343 4677777766666
Q ss_pred HHHH-h---cCCcEeEe
Q 009670 112 MKGI-N---HGACDYLL 124 (529)
Q Consensus 112 ~~al-~---~GA~DYL~ 124 (529)
++++ . .+.+.+|.
T Consensus 329 kei~~~f~~~~i~~~I~ 345 (407)
T COG1419 329 KEIIKQFSLFPIDGLIF 345 (407)
T ss_pred HHHHHHhccCCcceeEE
Confidence 6666 2 34455443
No 250
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=41.45 E-value=2.2e+02 Score=28.48 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=59.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.++++|+.+.+.. ..+++.++..+. .|.......+..+++.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 4677777765543 445555554432 34444433444444442 5676664333 223666777654 346877
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+ +.... ..+.++. .+++.++.+.+++.+.+..++.
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 33322 2222322 5778889999999999998864
No 251
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=41.42 E-value=2.5e+02 Score=28.71 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=31.5
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECC---H-H---HHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTNR---A-I---TALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~s---a-~---eALe~L~e~~~~pDLVIlDi 77 (529)
+.+|++||-|.. ..+.++.+.+..+..+..... . . ++++.+.. ..+|+||+|.
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT 162 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDT 162 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeC
Confidence 578999997753 234555566666766554322 2 2 23333332 2599999998
No 252
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=41.28 E-value=66 Score=31.17 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=35.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
|||+|||-.-.....+.+.|++.|+++....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 79999999988889999999999999887765321 21 4888777
No 253
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=41.18 E-value=4.3e+02 Score=27.46 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=51.5
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 23 GMRVLAV-DDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIV-DDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
+++++++ .++......++...+..+-.|....-..+..+++.. .|++++. + -|+.+++.+. ..+|+|+
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~--gg~t~~EA~a--~g~PvI~ 298 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---P--GGITLSEAAA--LGVPVIL 298 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---C--CchHHHHHHH--hCCCEEE
Confidence 3555544 444445555555554433223333322333333332 5676653 2 2565666543 3568776
Q ss_pred EecCCC--HHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 102 LSAYSD--TKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 102 lTa~~d--~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
...... .+......+.|+ ...+.+.++|...+..++.
T Consensus 299 ~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 299 YKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 543222 122222234554 2334677888888887764
No 254
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=41.01 E-value=2.1e+02 Score=30.41 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=42.0
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 009670 24 MRVLAVDDDQTCL-----KILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 24 mrVLIVDDd~~v~-----~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~ 89 (529)
-|+|||-|..... ..+...|++.|+++..+. ...++.+.+++.. +|+||- .-+.+-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 5899998876544 567778877777766543 2456777777654 898874 35666666665
Q ss_pred HH
Q 009670 90 LV 91 (529)
Q Consensus 90 ~I 91 (529)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 43
No 255
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=40.95 E-value=2.1e+02 Score=32.96 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=67.1
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHH-h--cCCCCcEEEEecCCCH
Q 009670 39 LEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELV-G--LEMDLPVVMLSAYSDT 108 (529)
Q Consensus 39 L~~~Le~~gy~V~~--a~sa~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~I-r--~~~~ipVIvlTa~~d~ 108 (529)
.-..|++.||.+.. +.++...+..|.... ||.|=+|-.+- +.....+++.+ . ...++.| +.++-.+.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-ia~gVe~~ 759 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV-VAEGVETK 759 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeE-EEEcCCCH
Confidence 34456778999875 467778888887664 99999997442 12234455533 2 3344554 46788888
Q ss_pred HHHHHHHhcCCc----EeEeCCCCHHHHHHHHHH
Q 009670 109 KLVMKGINHGAC----DYLLKPVRMEELKNTWQH 138 (529)
Q Consensus 109 e~v~~al~~GA~----DYL~KP~~~eeL~~~l~~ 138 (529)
+....+.+.|++ .|+.||...++|...++.
T Consensus 760 ~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 760 EQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 888888899997 368899999999886554
No 256
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=40.85 E-value=43 Score=33.04 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=44.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe--cCCCCCCHHH--HHHHHhcCCCCcE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISD--VYMPDMDGFK--LLELVGLEMDLPV 99 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlD--i~MPdmdGle--LL~~Ir~~~~ipV 99 (529)
|||||+|........+...|++.|+++.........+....+....+|.||+- -..|..++.+ +++.+. ..++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 68999999888788888999888988775532221111111111137766662 1123333332 333322 236887
Q ss_pred EEEe
Q 009670 100 VMLS 103 (529)
Q Consensus 100 IvlT 103 (529)
+=+.
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 7664
No 257
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.69 E-value=94 Score=31.90 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=52.3
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--cC--C
Q 009670 24 MRVLAVD-DDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LE--M 95 (529)
Q Consensus 24 mrVLIVD-Dd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir--~~--~ 95 (529)
|+|.|+- +.+. +...+..+|++.|+++. . ..+|+||+ -|.||- +|+..+ .. .
T Consensus 1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~~-------------~--~~~Dlvi~----iGGDGT-~L~a~~~~~~~~~ 60 (265)
T PRK04885 1 MKVAIISNGDPKSKRVASKLKKYLKDFGFILD-------------E--KNPDIVIS----VGGDGT-LLSAFHRYENQLD 60 (265)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHcCCccC-------------C--cCCCEEEE----ECCcHH-HHHHHHHhcccCC
Confidence 5566662 2223 34445556666666531 0 14788887 477884 344332 12 5
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
.+||+=+- .|=.+||. .++++++...+.++++.
T Consensus 61 ~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 61 KVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcC
Confidence 77877443 47778998 68889999999988764
No 258
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=40.69 E-value=3.6e+02 Score=27.15 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=61.2
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEE--EEC-----CHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhcCC-CC
Q 009670 28 AVDDDQTCLKILEKFLRECQYEVT--VTN-----RAITALKMLRENRNNFDLVISDVYMPDM--DGFKLLELVGLEM-DL 97 (529)
Q Consensus 28 IVDDd~~v~~~L~~~Le~~gy~V~--~a~-----sa~eALe~L~e~~~~pDLVIlDi~MPdm--dGleLL~~Ir~~~-~i 97 (529)
+..|...+.++++.+- ..+..|. .-- +..+..+.+++. ..|.|.+|...++. --++.++.++... ++
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 4455555555555554 3343333 111 222333444433 58988889777764 2477788777664 59
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
|||---+-.+.+.+.+.+++||+...+
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999988889999999999999998764
No 259
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=40.38 E-value=2.5e+02 Score=26.62 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=38.5
Q ss_pred CHHHHHHHHhcCCCCcE-EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 83 DGFKLLELVGLEMDLPV-VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 83 dGleLL~~Ir~~~~ipV-IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
-|++.++.++.....|+ +-+..+.....+..+.++||+...+.....++....++.+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~ 100 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLI 100 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHH
Confidence 57888988876566676 3244455567788888999999877665555555555443
No 260
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=40.33 E-value=1.6e+02 Score=29.17 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdm-dG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+..+..+.+.... ..+|++|+.--++ .| +++++.+.....+|||+=-+-...+.+.++.+.||+..+.
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4444555554332 4789999976543 33 6788877666789999988999999999988999998875
No 261
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=40.26 E-value=2.6e+02 Score=28.72 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=37.9
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 83 DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 83 dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
-|+.+++.+. ..+|||....... ..+.+..|..+|+..|-+.++|..++..++..
T Consensus 291 ~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 291 FGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred cChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 3555555443 4578886532211 23456778999999999999999999988753
No 262
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=40.20 E-value=2e+02 Score=27.63 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=43.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC------CHHHHHHHHHhcCCCceEEEEecCCCCCCH
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC--QYEVTVTN------RAITALKMLRENRNNFDLVISDVYMPDMDG 84 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~--gy~V~~a~------sa~eALe~L~e~~~~pDLVIlDi~MPdmdG 84 (529)
+++|.++...+.+.+.+.+.|++. +.+++... ..++.++.+.+. .+|+|++-+.+|...-
T Consensus 48 ~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 48 KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEI 115 (177)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHH
Confidence 589999999999999999998763 45555331 113345556554 4999999999997553
No 263
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=40.20 E-value=3e+02 Score=27.70 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=34.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
+.+|..||-++...+..+.-++..+.++.. .+..+.+.... ...+|+||+|.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhc--CCCEeEEEECC
Confidence 368999999999999888888776655433 33333322111 12599999984
No 264
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=39.96 E-value=2e+02 Score=30.74 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=40.7
Q ss_pred ccEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH
Q 009670 23 GMRVLAVDDDQTC-----LKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88 (529)
Q Consensus 23 ~mrVLIVDDd~~v-----~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL 88 (529)
+-|+|||-|.... ...+...|+..|+++..+. +..++++.+++. .+|+||- +-+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEE--KVDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCChHHHHHH
Confidence 3689999776443 3567778887777765443 345666777665 4898874 3455556665
Q ss_pred HHH
Q 009670 89 ELV 91 (529)
Q Consensus 89 ~~I 91 (529)
+.+
T Consensus 103 K~i 105 (382)
T cd08187 103 KAI 105 (382)
T ss_pred HHH
Confidence 543
No 265
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.86 E-value=2.2e+02 Score=32.48 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=34.0
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v---~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
+.+|.+|+-|..- ...++.+-+..++.+..+.+..+..+.++... .+|+||+|.
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDT 436 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDT 436 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecC
Confidence 3578888766422 22333333345666776677777777776543 589999997
No 266
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=39.79 E-value=2.3e+02 Score=28.17 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCC------CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 54 NRAITALKMLRENRNNFDLVISDVYMP------DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 54 ~sa~eALe~L~e~~~~pDLVIlDi~MP------dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.+..++.+..+ ...|.|.+.-..+ .--|+++++++.....+||+.+-+- +.+.+.+++++||+.+-
T Consensus 119 ~s~~~a~~A~~---~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 119 RDRHGAMEIGE---LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVA 190 (221)
T ss_pred CCHHHHHHhhh---cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 45666666443 2478887764431 1247888887766678999999876 56778889999999874
No 267
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=39.76 E-value=2.3e+02 Score=30.30 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=50.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+.+..++.++... .+|.|++.-..|. .-|++.++.+.....+||+.+-+-. .+.+.+++.+|++.+-+
T Consensus 246 S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~Ga~gVAv 321 (347)
T PRK02615 246 STTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAGAKRVAV 321 (347)
T ss_pred ecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCcEEEE
Confidence 56778887777653 4898887554432 3478888877666679999987664 67788888999988743
No 268
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.64 E-value=2.3e+02 Score=33.68 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=65.2
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC---CC--HHHHHHHHh--c
Q 009670 24 MRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD---MD--GFKLLELVG--L 93 (529)
Q Consensus 24 mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd---md--GleLL~~Ir--~ 93 (529)
.+|.+|+-|.. ..+.++.+-+..+..+..+.+..+..+.++... .+|+||+|. ++ .+ -.+.+..+. .
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDT--AGRs~~d~~l~eel~~l~~~~ 292 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDT--VGMSQRDRNVSEQIAMLCGVG 292 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeC--CCCCccCHHHHHHHHHHhccC
Confidence 47888876643 335566666667777777778888777777654 689999997 33 22 223333332 2
Q ss_pred CCCCcEEEEecCCCHHHHH---HHHhc----CCcEe-EeCCCCHHHHHHHHHHHHH
Q 009670 94 EMDLPVVMLSAYSDTKLVM---KGINH----GACDY-LLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~---~al~~----GA~DY-L~KP~~~eeL~~~l~~vlr 141 (529)
.+.-.++|+++....+... +.++. +.+.+ ++|=-....+-.++.-+.+
T Consensus 293 ~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~ 348 (767)
T PRK14723 293 RPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIR 348 (767)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHH
Confidence 2334567776665555444 44432 56665 4553333333344444433
No 269
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.57 E-value=3.8e+02 Score=29.13 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=54.1
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCHHHHH---HHHhc-
Q 009670 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY--MPDMDGFKLL---ELVGL- 93 (529)
Q Consensus 23 ~mrVLIVDDd~~v---~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~--MPdmdGleLL---~~Ir~- 93 (529)
+.+|.+|+-|..- ...++.+.+..|+.+..+.+..+..+.+... ..+|+||+|.- ++ .+-..+. +.+..
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNAC 283 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHhc
Confidence 4688888877532 2234444455677787777777766666654 36999999973 32 2433322 23332
Q ss_pred CCC-CcEEEEecCCCHHHHHHHH
Q 009670 94 EMD-LPVVMLSAYSDTKLVMKGI 115 (529)
Q Consensus 94 ~~~-ipVIvlTa~~d~e~v~~al 115 (529)
.+. -.++++++........+.+
T Consensus 284 ~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 284 GRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred CCCCeEEEEEcCCCCHHHHHHHH
Confidence 223 2467777777666555544
No 270
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.37 E-value=2.1e+02 Score=29.44 Aligned_cols=100 Identities=23% Similarity=0.332 Sum_probs=56.6
Q ss_pred cEEEEEe--CCH---HHHHHHHHHHHhCCCeEEEECCHHHHHHH-----HHh-cCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 24 MRVLAVD--DDQ---TCLKILEKFLRECQYEVTVTNRAITALKM-----LRE-NRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 24 mrVLIVD--Dd~---~v~~~L~~~Le~~gy~V~~a~sa~eALe~-----L~e-~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
|||.||- +.+ .....+..+|++.++++.......+.... +.. ...++|+||+ -|.||- +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 6788872 222 33455666677788887765322211110 000 0114777766 367884 233222
Q ss_pred -cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 93 -LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 93 -~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
....+||+.+.. |=.+||. .++++++...+.++++.
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 234788887754 2335665 67789999888888754
No 271
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=39.30 E-value=1.6e+02 Score=29.21 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=51.2
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEecCCCC---CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 53 TNRAITALKMLRENRNNFD-LVISDVYMPD---MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 53 a~sa~eALe~L~e~~~~pD-LVIlDi~MPd---mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
..+..+..+.+.+. .+| ++++|+.--+ ..-+++++.++....+||++--+-.+.+.+.+++..|++..++=
T Consensus 26 ~~d~~~~a~~~~~~--G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQ--GADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHC--CCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 34677777777654 254 7888886422 12356777777666799999999999999999999998766543
No 272
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=39.18 E-value=2.5e+02 Score=28.13 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=58.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.++++||.+.+.. ..++..+++.+. .|......++..+++.. .|++++--.. +.-|+.+++.+. ..+|||
T Consensus 223 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-E~~~~~~lEAma--~G~PvI 294 (358)
T cd03812 223 NAKLLLVGDGELE-EEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLY-EGLPLVLIEAQA--SGLPCI 294 (358)
T ss_pred CeEEEEEeCCchH-HHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccc-cCCCHHHHHHHH--hCCCEE
Confidence 3666777654432 334444444332 23333323333344432 5666654332 234666676553 357888
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+. ..... .+.+.. ...|+..+-+++++.+++..++...
T Consensus 295 ~s-~~~~~---~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 295 LS-DTITK---EVDLTD-LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred EE-cCCch---hhhhcc-CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 64 33332 233444 4567777778899999999987653
No 273
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=39.17 E-value=61 Score=33.71 Aligned_cols=55 Identities=25% Similarity=0.342 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-------CCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT-------NRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a-------~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
|+|||+.+.-.+-..|.+.|. .+++|... .+.+...+.+++.+ ||+||--.-+..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~--PDvVIn~AAyt~ 62 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETR--PDVVINAAAYTA 62 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhC--CCEEEECccccc
Confidence 679999999999999999997 56777643 35566777777664 999986544443
No 274
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=39.16 E-value=2e+02 Score=36.00 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=65.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCC-CCCH-HHHHHHHh-c
Q 009670 24 MRVLAV----DDDQTCLKILEKFLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMP-DMDG-FKLLELVG-L 93 (529)
Q Consensus 24 mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a~---sa~eALe~L~e~~~~pDLVIlDi~MP-dmdG-leLL~~Ir-~ 93 (529)
-+||+. |-|..=..++..+|+..||+|+-.. ..++.++.+++.+ +|+|.+-..|. .+.. .++++.++ .
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 467777 6666666777778888999998553 4677888887765 99999887776 3443 34566664 4
Q ss_pred CCCCcEEEEecCCCHHH-HHHH-Hhc-CCcEeEeCC
Q 009670 94 EMDLPVVMLSAYSDTKL-VMKG-INH-GACDYLLKP 126 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~-v~~a-l~~-GA~DYL~KP 126 (529)
..++||++=-+...... ..+. -.+ |++.|-.-.
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 45777776555544333 2221 123 888886543
No 275
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=39.00 E-value=36 Score=32.67 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=45.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCHH--HHHHHHhcCCCCcEEE
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVY--MPDMDGF--KLLELVGLEMDLPVVM 101 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~--MPdmdGl--eLL~~Ir~~~~ipVIv 101 (529)
|||||.....-..|..+|++.|+++.+....+..++.+... .||.||+-=. -|..++. ++++.+ ...+||+=
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 89999999999999999998888887665432122333322 3887776321 2222332 233332 34678765
Q ss_pred Ee
Q 009670 102 LS 103 (529)
Q Consensus 102 lT 103 (529)
+.
T Consensus 78 IC 79 (187)
T PRK08007 78 VC 79 (187)
T ss_pred EC
Confidence 54
No 276
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=38.99 E-value=1.2e+02 Score=26.38 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcCCCCcEEEEecCCCHH
Q 009670 32 DQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGLEMDLPVVMLSAYSDTK 109 (529)
Q Consensus 32 d~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLL~~Ir~~~~ipVIvlTa~~d~e 109 (529)
...+...++..|...|+.+....+.......+... .+-|++|+ +..++ .+-++.++..+. .+++||.+|...+..
T Consensus 11 S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~-~g~~vi~iT~~~~s~ 87 (128)
T cd05014 11 SGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKR-RGAPIIAITGNPNST 87 (128)
T ss_pred hHHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHH-CCCeEEEEeCCCCCc
Confidence 34455667777777788777665443222222211 12355554 33444 234555665543 478999999988765
Q ss_pred HHH
Q 009670 110 LVM 112 (529)
Q Consensus 110 ~v~ 112 (529)
...
T Consensus 88 la~ 90 (128)
T cd05014 88 LAK 90 (128)
T ss_pred hhh
Confidence 543
No 277
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.86 E-value=93 Score=31.10 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCCcEEEEecC------CCHHHHHHHHhcCCcEeEeCCCCHHHHHHHH
Q 009670 95 MDLPVVMLSAY------SDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (529)
Q Consensus 95 ~~ipVIvlTa~------~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l 136 (529)
-.+|||+++-+ .+..++..+-++||++||+-.+.++|-...-
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~R 141 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLR 141 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHH
Confidence 45899999854 5677888899999999999888887755433
No 278
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=38.86 E-value=2.7e+02 Score=28.85 Aligned_cols=99 Identities=16% Similarity=0.296 Sum_probs=58.5
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------HHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 25 RVLAV--DDDQTCL---KILEKFLRECQYEVTVTNRAITALKM-------LRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 25 rVLIV--DDd~~v~---~~L~~~Le~~gy~V~~a~sa~eALe~-------L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
+|+|+ .+.+... ..+..+|++.++++.........+.. .+.....+|+||+ -+.||- +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 47777 3344444 45555666778887765432221110 1111124788877 367874 334333
Q ss_pred --cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 93 --LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 93 --~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
...++|++=+. .|=.+||. .++.+++...+.++++.
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 23577877553 45567888 78899999999988754
No 279
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=38.81 E-value=2.3e+02 Score=29.53 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=39.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-----EECCHHHHHHHHHhcCCCceEEEE
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVT-----VTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-----~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
|...=|||=+|.|+..+..--..-++.+..+. .-..++...++|++.+ |||+++
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 159 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVI 159 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEE
Confidence 53345999999999988877777777766544 3345666777888775 998877
No 280
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.75 E-value=5.7e+02 Score=29.47 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=59.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.++++||.|.+. ...++.+.++.+. .|.....-.+..+++.. .|+.++=-. -+.-|..+++.+. ..+|||
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~EGfp~vlLEAMA--~GlPVV 500 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YEGLPNVLIEAQM--VGVPVI 500 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-ccCccHHHHHHHH--hCCCEE
Confidence 356677766543 3445555555443 24444443444444432 566665322 2334666777553 357888
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQH 138 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~ 138 (529)
..- ... ..+.+..|.++|+.+|.+...+.+.+..
T Consensus 501 ATd-vGG---~~EiV~dG~nG~LVp~~D~~aLa~ai~l 534 (578)
T PRK15490 501 STP-AGG---SAECFIEGVSGFILDDAQTVNLDQACRY 534 (578)
T ss_pred EeC-CCC---cHHHcccCCcEEEECCCChhhHHHHHHH
Confidence 443 332 3456678999999999888777766543
No 281
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=38.54 E-value=2.8e+02 Score=30.58 Aligned_cols=53 Identities=30% Similarity=0.370 Sum_probs=31.3
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTN---RA----ITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~---sa----~eALe~L~e~~~~pDLVIlDi 77 (529)
+.+|++|+-|.. ....++.+-+..+..+..+. +. .++++.+... .+|+||+|.
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDT 190 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDT 190 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeC
Confidence 578999988842 33444455455566655443 23 2334443332 489999998
No 282
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=38.47 E-value=93 Score=29.77 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=56.5
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCCe--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 26 VLAVDDDQTCLKILEKFLRE----CQYE--VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~----~gy~--V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
|||-|.+-.+.-.+...++. .+.. +. .+.+.+++.++++. .+|+|.+|-.-|+ +=-++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~-~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPE-DLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHH-HHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHH-HHHHHHHHHhhcCCcE
Confidence 45555554444334444432 2222 33 67899999999875 3899999976552 2222334443333336
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.|..++--+.+.+.+..+.|++.+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 7888898888999999999986664
No 283
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=38.18 E-value=1.1e+02 Score=22.47 Aligned_cols=45 Identities=36% Similarity=0.413 Sum_probs=32.8
Q ss_pred ehhHHHHHHHHHHHHhcCCCcchHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009670 195 VWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKF 242 (529)
Q Consensus 195 vw~~~L~~kflaavn~lGldkavPd~IL~~mk~~~LT~eEvAshLqky 242 (529)
.|+.+....|+.++...|-+ --+.|.+.+. .+-|..++..|.++|
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhh
Confidence 58999999999999988877 4455654333 578888888766554
No 284
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=38.03 E-value=4.3e+02 Score=26.71 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=62.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEecCC-C----CCCHHHHHHHHhc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYM-P----DMDGFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~M-P----dmdGleLL~~Ir~ 93 (529)
.++++||.+.+.. ..++.+.++.+. .|.... ..++..+++.. .|++++-... + +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 3677777765433 345555555332 343332 23445555543 5666653221 1 122666777654
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
..+|||.-. ... ..+.+..|-.+++..|-+.++|.+++..++.
T Consensus 293 -~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 -SGVPVVATR-HGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred -cCCCEEEeC-CCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 357888543 322 3445566778899999999999999998865
No 285
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.03 E-value=2.7e+02 Score=29.20 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.++++.++...++|||+.....+.+...++++.|..|++.
T Consensus 281 ~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4666777777789999998888999999999999888754
No 286
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.03 E-value=4.3e+02 Score=26.45 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=61.2
Q ss_pred ccE-EEEEeCCHHHHHHHHHHHHhCCCeEEE-E--CCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHH
Q 009670 23 GMR-VLAVDDDQTCLKILEKFLRECQYEVTV-T--NRAITALKMLRENRNNFDLVISDVYMPD--------MDGFKLLEL 90 (529)
Q Consensus 23 ~mr-VLIVDDd~~v~~~L~~~Le~~gy~V~~-a--~sa~eALe~L~e~~~~pDLVIlDi~MPd--------mdGleLL~~ 90 (529)
|.. |++.|-+..-...+...+++.|..... + .+..+.++.+.... .|.|++=-.+|. .+..+.++.
T Consensus 104 G~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~ 181 (242)
T cd04724 104 GVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKR 181 (242)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHH
Confidence 344 444454555444566666677776442 2 33455555555422 343333122332 123466777
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 91 Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
++...++||++=.+-...+.+.++.++ |+.+++-.
T Consensus 182 lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 182 IRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred HHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 776678999998888888899999999 99998863
No 287
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.02 E-value=1.2e+02 Score=30.31 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCCcEEEEe-----cCCCHHHHHHHHhcCCcEeEeC--CCC-HHHHHHHHHHHH
Q 009670 86 KLLELVGLEMDLPVVMLS-----AYSDTKLVMKGINHGACDYLLK--PVR-MEELKNTWQHVI 140 (529)
Q Consensus 86 eLL~~Ir~~~~ipVIvlT-----a~~d~e~v~~al~~GA~DYL~K--P~~-~eeL~~~l~~vl 140 (529)
++++.++...++|+++++ ...-...+.++.++|++.++.. |++ .+++...++.+.
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~ 126 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIK 126 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHH
Confidence 456666666788987765 2233345778889999999986 343 456655555543
No 288
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=38.01 E-value=2e+02 Score=31.04 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=51.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH-HhcCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE-V-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL-VGLEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~-V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~-Ir~~~~ipVI 100 (529)
-+|+.+|=++...+.++.-++..+.. + ....++.+.+.. ...+|+|++|- | ..+.+++.. ++....-.+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~----~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE----ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh----cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEE
Confidence 37999999999999999988776654 2 233455444322 22599999996 4 345567664 5443444688
Q ss_pred EEecCCCH
Q 009670 101 MLSAYSDT 108 (529)
Q Consensus 101 vlTa~~d~ 108 (529)
.+|+.+-.
T Consensus 155 yvSAtD~~ 162 (382)
T PRK04338 155 CVTATDTA 162 (382)
T ss_pred EEEecCch
Confidence 89866543
No 289
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.89 E-value=4.7e+02 Score=28.19 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC-------CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 55 RAITALKMLRENRNNFDLVISDVYM-------PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~M-------PdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+..+..+.+.+. .+|+|.++-.. +..+-.++.+.++. .++|||. ..-...+.+.++++.||+..+.
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 455666666554 49999997532 22255666666664 4788876 4556677888899999998865
No 290
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=37.81 E-value=94 Score=31.89 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=27.3
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 009670 24 MRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 24 mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
.+|.+|+-|+. ....+..+-+..++.+..+.+..+..+.++... .+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 56666665552 223333333334555555555555555555433 467777764
No 291
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.79 E-value=1.5e+02 Score=29.47 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+..++++.+++.. -.++++|+.--++ .|++ +..+...++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d--~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE--EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH--HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 3456666665542 3699999977764 6777 333333579999999999999999999999998765
No 292
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=37.52 E-value=2.2e+02 Score=28.77 Aligned_cols=56 Identities=25% Similarity=0.346 Sum_probs=36.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQ-----YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~g-----y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
..+|.+||-++.+.+..++.+...+ -++. ...++.+.++ .....+|+||+|..-|.
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFDVIIVDSTDPV 157 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCccEEEEeCCCCC
Confidence 3579999999999998888875421 1222 2345544443 33346999999986543
No 293
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.52 E-value=3.8e+02 Score=26.71 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCeEEEECC---HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH-------HHhcCCCCcEEEEecCC
Q 009670 37 KILEKFLRECQYEVTVTNR---AITALKMLRENRNNFDLVISDVYMPDMDGFKLLE-------LVGLEMDLPVVMLSAYS 106 (529)
Q Consensus 37 ~~L~~~Le~~gy~V~~a~s---a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~-------~Ir~~~~ipVIvlTa~~ 106 (529)
..+.+.+++.|..+-.+-. .-+.++.+. +..|+|++=..-|+.-|-.+.+ ++|.......|=+-+--
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~---~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv 178 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPLA---EHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV 178 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhh---ccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCc
Confidence 4455566677777776633 334444333 2479888888889988877763 34433333466567777
Q ss_pred CHHHHHHHHhcCCcEeEeC-----CCCHHHHHHHHHHHHH
Q 009670 107 DTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIR 141 (529)
Q Consensus 107 d~e~v~~al~~GA~DYL~K-----P~~~eeL~~~l~~vlr 141 (529)
..+.+.++.++||+-.+.- --++.++...++...+
T Consensus 179 ~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 179 GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVE 218 (224)
T ss_pred CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHh
Confidence 8889999999999877554 3355666666655543
No 294
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.46 E-value=2.6e+02 Score=27.43 Aligned_cols=95 Identities=8% Similarity=-0.001 Sum_probs=52.7
Q ss_pred HHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc-EEEEecCCCHHHHHHHHhcC
Q 009670 41 KFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP-VVMLSAYSDTKLVMKGINHG 118 (529)
Q Consensus 41 ~~Le~~gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip-VIvlTa~~d~e~v~~al~~G 118 (529)
..|+..+.- |....+.+++++.++..- .-.+=++.+.+-.-++++.++.++.....+ +|=.-.--+.+.+..++++|
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aG 83 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAG 83 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcC
Confidence 344443332 334456666666655431 112335566666667888887665333323 23233345667889999999
Q ss_pred CcEeEeCCCCHHHHHHHHH
Q 009670 119 ACDYLLKPVRMEELKNTWQ 137 (529)
Q Consensus 119 A~DYL~KP~~~eeL~~~l~ 137 (529)
|+ |+.-|....++.+..+
T Consensus 84 A~-fivsp~~~~~v~~~~~ 101 (206)
T PRK09140 84 GR-LIVTPNTDPEVIRRAV 101 (206)
T ss_pred CC-EEECCCCCHHHHHHHH
Confidence 94 5555755555554443
No 295
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=37.45 E-value=3e+02 Score=27.76 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=50.8
Q ss_pred hCCCeEEEECCH--------HHHH-HHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHH
Q 009670 45 ECQYEVTVTNRA--------ITAL-KMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGI 115 (529)
Q Consensus 45 ~~gy~V~~a~sa--------~eAL-e~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al 115 (529)
+.+++|.++.++ +.+. +++++. .||.||.----|..-|-.-.|.+-...++|.|+++...... +++.+
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~~--~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~-vkdel 105 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEEF--NPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLK-VKDEL 105 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCccch-hHHHH
Confidence 356777766543 2232 344444 48998887666777787777766566789999998877554 44445
Q ss_pred -hcCCcEeEeCC
Q 009670 116 -NHGACDYLLKP 126 (529)
Q Consensus 116 -~~GA~DYL~KP 126 (529)
+-|.-..|+|+
T Consensus 106 eeqGlGYIivk~ 117 (277)
T COG1927 106 EEQGLGYIIVKA 117 (277)
T ss_pred HhcCCeEEEecC
Confidence 55555555554
No 296
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=37.43 E-value=1.9e+02 Score=29.99 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=48.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH--HHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDG--FKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdG--leLL~~Ir~~~~ip 98 (529)
+.+|+-||-++...+..++-++..+.. +. ...++.+.... ....+|+|++| |...| -++++.+.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---QGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---cCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 368999999999999988888776653 33 34566554321 12259999999 33444 35666664322223
Q ss_pred EEEEecCC
Q 009670 99 VVMLSAYS 106 (529)
Q Consensus 99 VIvlTa~~ 106 (529)
||.++...
T Consensus 269 ivyvsc~p 276 (315)
T PRK03522 269 ILYSSCNA 276 (315)
T ss_pred EEEEECCc
Confidence 55555433
No 297
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=37.27 E-value=1.1e+02 Score=28.92 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=47.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE--------------EECCHHHHHHHHHhc--CCCceEEEEec-CCCCCCH
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT--------------VTNRAITALKMLREN--RNNFDLVISDV-YMPDMDG 84 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~--------------~a~sa~eALe~L~e~--~~~pDLVIlDi-~MPdmdG 84 (529)
.+.||||+.--..+.+.+.++|+...+.+. .+-+-......+... ...+|+||+|= +.-|-.-
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~s 111 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTS 111 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHH
Confidence 468999999999999999999987543221 111122344433332 12699999994 4434333
Q ss_pred HHH---HHHHhcCCCCcEEEEecCC
Q 009670 85 FKL---LELVGLEMDLPVVMLSAYS 106 (529)
Q Consensus 85 leL---L~~Ir~~~~ipVIvlTa~~ 106 (529)
+.+ ++.+.......+|++|+..
T Consensus 112 IA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 112 IAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HhhheeHHHhhhccCeeEEEEeCCC
Confidence 332 3333334456799999764
No 298
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=37.23 E-value=1.9e+02 Score=29.17 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=64.9
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHH-h--cCCCCcEEEEecCC
Q 009670 37 KILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELV-G--LEMDLPVVMLSAYS 106 (529)
Q Consensus 37 ~~L~~~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~I-r--~~~~ipVIvlTa~~ 106 (529)
..+-..|+..|+.+. -+.++-..+..|...+ ||.|=+|-.+- +.....+++.+ . ...++.|| .-+-.
T Consensus 139 ~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vv-aEGVE 215 (256)
T COG2200 139 LALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV-AEGVE 215 (256)
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEE-EeecC
Confidence 334455667788866 5688899999998765 99999886433 23344566533 3 23344444 44566
Q ss_pred CHHHHHHHHhcCCc----EeEeCCCCHHHHHHHHH
Q 009670 107 DTKLVMKGINHGAC----DYLLKPVRMEELKNTWQ 137 (529)
Q Consensus 107 d~e~v~~al~~GA~----DYL~KP~~~eeL~~~l~ 137 (529)
..+......+.|++ .|+.||...+++...+.
T Consensus 216 t~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 216 TEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred CHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 66677777789987 36888998877666554
No 299
>PRK00811 spermidine synthase; Provisional
Probab=37.13 E-value=1.6e+02 Score=30.16 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=39.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC------CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLREC------QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~------gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
+...+|.+||=++.+.+..++.+... .-++. ...++.+.+ +.....+|+||+|..-|.
T Consensus 98 ~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 98 PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV---AETENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH---hhCCCcccEEEECCCCCC
Confidence 33468999999999999999988642 12343 345655544 333346999999986663
No 300
>PRK13566 anthranilate synthase; Provisional
Probab=37.12 E-value=48 Score=38.89 Aligned_cols=78 Identities=27% Similarity=0.362 Sum_probs=48.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe--cCCCC-CCHHHHHHHHhcCCCCc
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISD--VYMPD-MDGFKLLELVGLEMDLP 98 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlD--i~MPd-mdGleLL~~Ir~~~~ip 98 (529)
.++||||||........+.++|++.|++|.+...... .+.+... .||.||+- ...|. ..-.++++.+. ..++|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAAL-ARNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHH-HCCCc
Confidence 4789999999988888999999999999886644321 1222222 48987762 12221 12234444332 34688
Q ss_pred EEEEe
Q 009670 99 VVMLS 103 (529)
Q Consensus 99 VIvlT 103 (529)
|+=+.
T Consensus 601 ILGIC 605 (720)
T PRK13566 601 IFGVC 605 (720)
T ss_pred EEEEe
Confidence 87664
No 301
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=37.07 E-value=1.5e+02 Score=28.24 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=56.6
Q ss_pred HHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCC-----CCHHHHHHHH-h--cCCCCcEEEEecCCC
Q 009670 38 ILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELV-G--LEMDLPVVMLSAYSD 107 (529)
Q Consensus 38 ~L~~~Le~~gy~V~~a--~sa~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLL~~I-r--~~~~ipVIvlTa~~d 107 (529)
.....|++.|+.+..- ..+..-+..+...+ ||.|-+|..+-. .....+++.+ . ....+. |+.++-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCC
Confidence 3345566789887754 45566667777654 999999965431 1133445533 2 233444 44778888
Q ss_pred HHHHHHHHhcCCc----EeEeCCCCH
Q 009670 108 TKLVMKGINHGAC----DYLLKPVRM 129 (529)
Q Consensus 108 ~e~v~~al~~GA~----DYL~KP~~~ 129 (529)
.+....+.+.|++ .|+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 8888888899986 356777654
No 302
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.98 E-value=1.2e+02 Score=29.97 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=30.0
Q ss_pred CceEEEEecCCC-----CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009670 69 NFDLVISDVYMP-----DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 69 ~pDLVIlDi~MP-----dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~a 114 (529)
.+|+||+|=... =.+--++++.++..|.--=|++|+......+.+.
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 599999994222 1344566777776666566778988766655443
No 303
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=36.88 E-value=4.6e+02 Score=28.97 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=30.4
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEecC
Q 009670 23 GMRVLAVDDDQTCL---KILEKFLRECQYEVTVTN---RA----ITALKMLRENRNNFDLVISDVY 78 (529)
Q Consensus 23 ~mrVLIVDDd~~v~---~~L~~~Le~~gy~V~~a~---sa----~eALe~L~e~~~~pDLVIlDi~ 78 (529)
+.+|+||+-|+.-. ..++.+-+..+..+.... ++ .++++.++.. .+|+||+|.-
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDTa 191 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDTS 191 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 56899998775432 223333334455554332 22 2455555443 4999999983
No 304
>PLN02335 anthranilate synthase
Probab=36.87 E-value=52 Score=32.64 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=45.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHhcCCCceEEEEec--CCCCCCHHHHHHHHh-cCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA-ITALKMLRENRNNFDLVISDV--YMPDMDGFKLLELVG-LEM 95 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa-~eALe~L~e~~~~pDLVIlDi--~MPdmdGleLL~~Ir-~~~ 95 (529)
.....+|||||-....-..+.+.|++.|+++.++... .++ +.+... .||.||+-= .-|...|. .++.++ ...
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~--~~d~iVisgGPg~p~d~~~-~~~~~~~~~~ 90 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTV-EELKRK--NPRGVLISPGPGTPQDSGI-SLQTVLELGP 90 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCH-HHHHhc--CCCEEEEcCCCCChhhccc-hHHHHHHhCC
Confidence 3446799999976667777889999889887766432 222 222222 377666532 11222221 234333 234
Q ss_pred CCcEEEEe
Q 009670 96 DLPVVMLS 103 (529)
Q Consensus 96 ~ipVIvlT 103 (529)
.+||+-+.
T Consensus 91 ~~PiLGIC 98 (222)
T PLN02335 91 LVPLFGVC 98 (222)
T ss_pred CCCEEEec
Confidence 57876554
No 305
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.65 E-value=4e+02 Score=27.79 Aligned_cols=90 Identities=23% Similarity=0.180 Sum_probs=58.1
Q ss_pred EEEEeCCHHHH--H--HHHHHHH----hCCC--eE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC
Q 009670 26 VLAVDDDQTCL--K--ILEKFLR----ECQY--EV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE 94 (529)
Q Consensus 26 VLIVDDd~~v~--~--~L~~~Le----~~gy--~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~ 94 (529)
|||-|.+-... - .+...++ ..++ .| +.+.+.+++.+.+.. .+|+|.+|-.-|+ +--+.++.++
T Consensus 162 vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e-~l~~av~~~~-- 235 (281)
T PRK06543 162 VMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD-DLREGVELVD-- 235 (281)
T ss_pred EEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH-HHHHHHHHhC--
Confidence 77777775542 1 2444443 2343 34 367999999998864 4899999964442 2222333333
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 95 MDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
...+|-.++--+.+.+.+....|++-.
T Consensus 236 -~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 -GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred -CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 223788899999999999889998654
No 306
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=36.63 E-value=2.5e+02 Score=30.66 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcCCCcc
Q 009670 199 ELHTKFIGAVNLLGLDKA 216 (529)
Q Consensus 199 ~L~~kflaavn~lGldka 216 (529)
..|..++.++..+|+-+.
T Consensus 242 ~g~~~~i~~L~~lGll~~ 259 (389)
T COG1748 242 PGHLEVIKALRDLGLLSR 259 (389)
T ss_pred ccHHHHHHHHHHcCCCcc
Confidence 345666666666665543
No 307
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.54 E-value=4.7e+02 Score=26.49 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=36.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC----CCHHH-HHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY----SDTKL-VMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~----~d~e~-v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
.|++++.- + +..+++.+. ..+|||++... ..... .....+.| .++++.+- +.++|.+++..++.
T Consensus 253 ad~~v~~s---g--~~t~~Eam~--~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g-~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA--LGLPAILIPLPYAADDHQTANARALVKAG-AAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH--hCCCEEEeecCCCCCCcHHHhHHHHHhCC-CEEEEecCCCCHHHHHHHHHHHhc
Confidence 56666521 1 344555443 45788875421 12222 23333444 57887774 89999999988864
No 308
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=36.17 E-value=5.1e+02 Score=27.66 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=65.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEC---CHHHHHHHHHhcCCCceEEEEec-CCCCC-CHHHHHHHHhcCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTN---RAITALKMLRENRNNFDLVISDV-YMPDM-DGFKLLELVGLEMD 96 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~---sa~eALe~L~e~~~~pDLVIlDi-~MPdm-dGleLL~~Ir~~~~ 96 (529)
.++.+||.|-+. +..+++.+++.+.+ ++... ..++..+++.. .|+.++=. ...+. =+..+++.+. ..
T Consensus 269 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~~~~~~~~~~~p~~~~Eama--~G 341 (415)
T cd03816 269 KLLCIITGKGPL-KEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVSLHTSSSGLDLPMKVVDMFG--CG 341 (415)
T ss_pred CEEEEEEecCcc-HHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEEccccccccCCcHHHHHHHH--cC
Confidence 478888877653 56677777776654 44332 34566566653 57766410 11111 1445666543 46
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|||. |... ...+.++.|.++++.. +.++|.+++..++..
T Consensus 342 ~PVI~-s~~~---~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 342 LPVCA-LDFK---CIDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred CCEEE-eCCC---CHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 78886 4333 2446677888999984 889999999888653
No 309
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=36.11 E-value=4.6e+02 Score=28.17 Aligned_cols=108 Identities=11% Similarity=0.168 Sum_probs=66.0
Q ss_pred ccEEEEEeCCH-----HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 009670 23 GMRVLAVDDDQ-----TCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIVDDd~-----~v~~~L~~~Le~~gy--~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~ 93 (529)
.++++||.+.+ ...+.|+++.++.+. .|.... +-++..++++. .|+++.=.. .+.=|+-+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~-~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMW-NEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCc-cCCcccHHHHHHH-
Confidence 48888887642 345566666666555 355443 34566666653 577766322 2334777777654
Q ss_pred CCCCcEEEEecCCCHHHHHHHHh---cCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGIN---HGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~---~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
..+|||...... ...+.++ .|..+|+.. +.+++.+++..++..
T Consensus 347 -~G~pvIa~~~gg---p~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 347 -AGLIPLAHASGG---PLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSL 392 (419)
T ss_pred -cCCcEEEEcCCC---CchheeeccCCCCceEEeC--CHHHHHHHHHHHHhC
Confidence 345777543222 1233444 688899963 899999999988753
No 310
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=36.06 E-value=93 Score=30.09 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=34.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
|+|+|||-.--....+...|++.++++..+.+.++. . .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~----~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVI----L----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHh----C----CCCEEEE
Confidence 789999988888888888999999999988876432 1 3777765
No 311
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=35.76 E-value=97 Score=28.85 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=45.0
Q ss_pred CccEEEEEeCCHHH---------HHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 22 IGMRVLAVDDDQTC---------LKILEKFLRE-CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 22 ~~mrVLIVDDd~~v---------~~~L~~~Le~-~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
..++|.|||.|... -+.+.+.|+. ..+.+.. .+..+|.+.++..+ ++.+|. .|..=.-+++...
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g~--~~~~iv---IP~~Fs~~l~~~~ 115 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADGK--YYMVIT---IPEDFSENATSLL 115 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcCc--EEEEEE---ECcchhHHHHhhc
Confidence 46889999877654 4555555654 3455443 48899999998764 766643 3532122233222
Q ss_pred h-cCCCCcEEEEecCC
Q 009670 92 G-LEMDLPVVMLSAYS 106 (529)
Q Consensus 92 r-~~~~ipVIvlTa~~ 106 (529)
. ....+.|.+.+...
T Consensus 116 ~~~~~~~~i~~~~~~~ 131 (164)
T TIGR03061 116 DDQPKKAQLTYKTNDA 131 (164)
T ss_pred cCCCCccEEEEEECCC
Confidence 1 22344455555544
No 312
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=35.61 E-value=5e+02 Score=26.58 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=61.1
Q ss_pred ccEEEEEeCCHH-HHHHHHHHHHhCCCeEEE-E--CCHHHHHHHHHhcCCCceEEEEecCCCCCCH---------HHHHH
Q 009670 23 GMRVLAVDDDQT-CLKILEKFLRECQYEVTV-T--NRAITALKMLRENRNNFDLVISDVYMPDMDG---------FKLLE 89 (529)
Q Consensus 23 ~mrVLIVDDd~~-v~~~L~~~Le~~gy~V~~-a--~sa~eALe~L~e~~~~pDLVIlDi~MPdmdG---------leLL~ 89 (529)
|..-+||-|-|. -...+...+++.|..... + ++..+-++.+.+....+=.++. .++..| .++++
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS---~~GvTG~~~~~~~~~~~~i~ 195 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS---TTGVTGLKTELDKKLKKLIE 195 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc---CCCCCCCCccccHHHHHHHH
Confidence 455555555443 334455566677776442 2 3445555555544323433333 344333 33455
Q ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 90 LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 90 ~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
++|...++||.+=-+-.+.+.+.++.++||+..++-.
T Consensus 196 ~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 196 TIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 6666678899886677788999999999999998864
No 313
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=35.59 E-value=2.3e+02 Score=27.66 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCC---------CCHHHHHHHHhc--CCCCcEEEEecCCCHHHHHH---HHhcCC
Q 009670 54 NRAITALKMLRENRNNFDLVISDVYMPD---------MDGFKLLELVGL--EMDLPVVMLSAYSDTKLVMK---GINHGA 119 (529)
Q Consensus 54 ~sa~eALe~L~e~~~~pDLVIlDi~MPd---------mdGleLL~~Ir~--~~~ipVIvlTa~~d~e~v~~---al~~GA 119 (529)
.+-.+.++.+... .+|.|++|+.-.. .+-.+++..++. .....+++.....+.....+ +++.|+
T Consensus 8 ~~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~ 85 (221)
T PF03328_consen 8 ANSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGA 85 (221)
T ss_dssp STSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCC
Confidence 3444555555544 5999999985433 122233333332 23457888888888777777 999999
Q ss_pred cEeEeCCC-CHHHHHHHHHHH
Q 009670 120 CDYLLKPV-RMEELKNTWQHV 139 (529)
Q Consensus 120 ~DYL~KP~-~~eeL~~~l~~v 139 (529)
+..++-=+ +.+++...++.+
T Consensus 86 ~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 86 DGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SEEEETT--SHHHHHHHHHHH
T ss_pred CeeeccccCcHHHHHHHHHHH
Confidence 98777445 566666666654
No 314
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=35.26 E-value=4e+02 Score=26.52 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHH
Q 009670 57 ITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEE 131 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~ee 131 (529)
.+..+++.. .|++++-..-+ +.-|..+++.+. ..+|||.. .... ..+.++.+..+++.++-+.++
T Consensus 247 ~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~~---~~~~i~~~~~g~~~~~~~~~~ 316 (355)
T cd03799 247 EEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA--MGLPVIST-DVSG---IPELVEDGETGLLVPPGDPEA 316 (355)
T ss_pred HHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH--cCCCEEec-CCCC---cchhhhCCCceEEeCCCCHHH
Confidence 455555543 56666633321 222566666543 45788753 2222 345667788899999999999
Q ss_pred HHHHHHHHHHh
Q 009670 132 LKNTWQHVIRR 142 (529)
Q Consensus 132 L~~~l~~vlr~ 142 (529)
+.+.+..++..
T Consensus 317 l~~~i~~~~~~ 327 (355)
T cd03799 317 LADAIERLLDD 327 (355)
T ss_pred HHHHHHHHHhC
Confidence 99999988753
No 315
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=35.22 E-value=1.1e+02 Score=26.71 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=13.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC
Q 009670 30 DDDQTCLKILEKFLRECQYEVTVTN 54 (529)
Q Consensus 30 DDd~~v~~~L~~~Le~~gy~V~~a~ 54 (529)
|.+......+...|...||++..+.
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~AT~ 32 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLFATG 32 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEEECc
Confidence 3343444445555556787776443
No 316
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=35.15 E-value=1.9e+02 Score=30.90 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=40.6
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 009670 24 MRVLAVDDDQT-----CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 24 mrVLIVDDd~~-----v~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~ 89 (529)
-|||||-|... ....+...|++.+.++..+. +..++.+.+++. .+|+||- .-+.+-++..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE--GCDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 58999988654 33567777877777665432 345666777765 4998874 34556666665
Q ss_pred HH
Q 009670 90 LV 91 (529)
Q Consensus 90 ~I 91 (529)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 43
No 317
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=35.12 E-value=1.5e+02 Score=29.49 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=45.0
Q ss_pred HHHHhCCCeEEEECC---HHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecC
Q 009670 41 KFLRECQYEVTVTNR---AITALKMLRENRNNFDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAY 105 (529)
Q Consensus 41 ~~Le~~gy~V~~a~s---a~eALe~L~e~~~~pDLVIlDi~MPdmdG-------leLL~~Ir~-----~~~ipVIvlTa~ 105 (529)
..+++.|..+..+-+ ..+.++.+-. ..|.|++=-.-|+..| ++-++.++. ..++||.+. +-
T Consensus 100 ~~ik~~g~k~GlalnP~Tp~~~i~~~l~---~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd-GG 175 (220)
T PRK08883 100 QLIKEHGCQAGVVLNPATPLHHLEYIMD---KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID-GG 175 (220)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE-CC
Confidence 344556666554432 3333332222 3676666455676555 333443332 123566554 44
Q ss_pred CCHHHHHHHHhcCCcEeEeC
Q 009670 106 SDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 106 ~d~e~v~~al~~GA~DYL~K 125 (529)
-+.+.+.++.++||+.++.=
T Consensus 176 I~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 176 VKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 55888999999999987553
No 318
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.78 E-value=3.9e+02 Score=28.05 Aligned_cols=100 Identities=24% Similarity=0.333 Sum_probs=58.9
Q ss_pred cEEEEEe--CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHhcCCCceEEEEecCCCCC
Q 009670 24 MRVLAVD--DDQT---CLKILEKFLRECQYEVTVTNRAITALKM----------------LRENRNNFDLVISDVYMPDM 82 (529)
Q Consensus 24 mrVLIVD--Dd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~----------------L~e~~~~pDLVIlDi~MPdm 82 (529)
.+|.||- +.+. ....+..+|++.|+++.........+.. .......+|+||+ -|.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 4588772 3333 3455666677778888765443222210 0111113677766 377
Q ss_pred CHH--HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 83 DGF--KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 83 dGl--eLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
||- ..++... ...+||+-+- .|=.+||. .+.++++...+.++++.
T Consensus 82 DGT~L~aar~~~-~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 82 DGTILRAAELAR-AADVPVLGVN-------------LGHVGFLA-EAEAEDLDEAVERVVDR 128 (306)
T ss_pred CHHHHHHHHHhc-cCCCcEEEEe-------------cCCCceec-cCCHHHHHHHHHHHHcC
Confidence 883 3333332 3568887553 36667887 47889999999998865
No 319
>PRK01581 speE spermidine synthase; Validated
Probab=34.77 E-value=2.3e+02 Score=30.81 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=36.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHH--HH---hC---CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 009670 21 PIGMRVLAVDDDQTCLKILEKF--LR---EC---QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~--Le---~~---gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP 80 (529)
+...+|.+||=|+.+.+..+.+ |. +. +-++. ...++.+.+. .....+|+||+|+--|
T Consensus 172 ~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~~YDVIIvDl~DP 237 (374)
T PRK01581 172 ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSSLYDVIIIDFPDP 237 (374)
T ss_pred CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCCCccEEEEcCCCc
Confidence 3346899999999999888862 21 11 22444 4466665554 3334699999997443
No 320
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.63 E-value=3.9e+02 Score=27.63 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=56.3
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCCC--eE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCC
Q 009670 26 VLAVDDDQTCLKILEKFLR----ECQY--EV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDL 97 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le----~~gy--~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~i 97 (529)
|||-|.+-.....+...++ +.++ .+ +.+.+.+||++.++. .+|+|.+|-.-| .+=-+.+++++. .+++
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~~~-e~l~~~v~~~~~~~~~~ 230 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNMSV-EEIKEVVAYRNANYPHV 230 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhhccCCCe
Confidence 5555555444444444443 2343 23 367899999999864 389999885311 111112222222 2333
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.|..++--+.+.+.+..+.||+.+.+
T Consensus 231 -~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 231 -LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred -EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 56677778999999999999987644
No 321
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.52 E-value=3.5e+02 Score=27.44 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=57.2
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 24 MRVLAVDDD--QTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd--~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
|++.|+..+ ......++..|.+.|+.+....+.. .....+|+||+ -+.||- +++..+.. ++||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 566666333 3344556666767787766554422 11224788877 477885 34444433 789886
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+. .|=.+||. .++++++...+.++.+.
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcC
Confidence 64 34467777 68889999888888654
No 322
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=34.08 E-value=1.3e+02 Score=33.03 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLL~~Ir~~-~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
+.+..+++. .+|+|.+|..-.. ...++.+++++.. +++|||+ -.-...+.+..++++||+...
T Consensus 227 ~r~~~L~~a---G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVKA---GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 444444432 4899999985442 3456677777654 7888886 445567788899999998774
No 323
>PRK04457 spermidine synthase; Provisional
Probab=34.05 E-value=1.9e+02 Score=29.27 Aligned_cols=53 Identities=11% Similarity=0.234 Sum_probs=37.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHhcCCCceEEEEecC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQ--YEVT-VTNRAITALKMLRENRNNFDLVISDVY 78 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~g--y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~ 78 (529)
..+|.+||=++.+.+..++.+...+ -++. ...++.+.+.. ....+|+|++|..
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEEeCC
Confidence 5899999999999999998875322 2343 34666665543 3346999999963
No 324
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=34.01 E-value=2.1e+02 Score=31.88 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=45.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCc
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGAC 120 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~ 120 (529)
.+.+..++.+..+. .+|.|.+--..|. .-|++.++.+.....+||+.+-+- +.+.+.+++..|++
T Consensus 396 S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 55677777665542 4888875433332 127888887766678999988655 47788899999988
No 325
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=33.75 E-value=3.5e+02 Score=29.13 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=44.6
Q ss_pred ceEEEEecCCCCCCHHH-HHHHHhcCCCCcEEEEe-cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFK-LLELVGLEMDLPVVMLS-AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 70 pDLVIlDi~MPdmdGle-LL~~Ir~~~~ipVIvlT-a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.+.+|++..-+..=-+| ++..+. .....||... ...+......+++.|+++.+++|-++.++++....+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 56666665433322233 223232 2334554443 44455567788899999999999999999988776643
No 326
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=33.60 E-value=4.3e+02 Score=28.15 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=51.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhc------------CCCceEEEEecCCCCCCH--HHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLREN------------RNNFDLVISDVYMPDMDG--FKL 87 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~------------~~~pDLVIlDi~MPdmdG--leL 87 (529)
-+|+.||-++...+.+++-++..+.. +. ...++.+.+..+... ...||+||+|- | -.| -++
T Consensus 229 ~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--P-R~G~~~~~ 305 (362)
T PRK05031 229 RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--P-RAGLDDET 305 (362)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--C-CCCCcHHH
Confidence 37999999999999888887766663 43 557777776654321 11489999995 4 344 456
Q ss_pred HHHHhcCCCCcEEEEecCC
Q 009670 88 LELVGLEMDLPVVMLSAYS 106 (529)
Q Consensus 88 L~~Ir~~~~ipVIvlTa~~ 106 (529)
++.+.. + -.||.++-..
T Consensus 306 l~~l~~-~-~~ivyvSC~p 322 (362)
T PRK05031 306 LKLVQA-Y-ERILYISCNP 322 (362)
T ss_pred HHHHHc-c-CCEEEEEeCH
Confidence 676654 2 2466666544
No 327
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=33.56 E-value=1.4e+02 Score=28.46 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCC--CCCHHHHHHHHhc-CCCCcEEEEe--cCCCHHHHHHHHhcCCcEeEeCCCCH
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMP--DMDGFKLLELVGL-EMDLPVVMLS--AYSDTKLVMKGINHGACDYLLKPVRM 129 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MP--dmdGleLL~~Ir~-~~~ipVIvlT--a~~d~e~v~~al~~GA~DYL~KP~~~ 129 (529)
+.++++++++...+.++ .+.+.+| -..|++.++.++. .+++|+++-. ..........+.++||+..+.-....
T Consensus 11 ~~~~~~~~~~~l~~~i~--~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~ 88 (202)
T cd04726 11 DLEEALELAKKVPDGVD--IIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP 88 (202)
T ss_pred CHHHHHHHHHHhhhcCC--EEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC
Confidence 34455555444332222 3444333 2346788877754 3677776532 22332345677889988777654332
Q ss_pred -HHHHHHHHHH
Q 009670 130 -EELKNTWQHV 139 (529)
Q Consensus 130 -eeL~~~l~~v 139 (529)
+.+...++.+
T Consensus 89 ~~~~~~~i~~~ 99 (202)
T cd04726 89 LSTIKKAVKAA 99 (202)
T ss_pred HHHHHHHHHHH
Confidence 2344444433
No 328
>PHA02518 ParA-like protein; Provisional
Probab=33.45 E-value=1e+02 Score=29.17 Aligned_cols=12 Identities=50% Similarity=0.634 Sum_probs=10.4
Q ss_pred ccEEEEEeCCHH
Q 009670 23 GMRVLAVDDDQT 34 (529)
Q Consensus 23 ~mrVLIVDDd~~ 34 (529)
+.||++||-|+.
T Consensus 29 g~~vlliD~D~q 40 (211)
T PHA02518 29 GHKVLLVDLDPQ 40 (211)
T ss_pred CCeEEEEeCCCC
Confidence 689999998875
No 329
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=33.34 E-value=3.3e+02 Score=28.34 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=51.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe--EE--EECCHHHHHHHHHhc-CC-CceEEEEecCCCCC--CHHHHHHHHhcC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE--VT--VTNRAITALKMLREN-RN-NFDLVISDVYMPDM--DGFKLLELVGLE 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~--~a~sa~eALe~L~e~-~~-~pDLVIlDi~MPdm--dGleLL~~Ir~~ 94 (529)
...++++||....+..|..+ +.. +. ...+..+....|... .. .-=.++.|-.||.. -|.+|++..+.
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~----~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~- 104 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHL----GIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAARE- 104 (275)
T ss_pred hCCEEEEeccHHHHHHHHHh----CCCCceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHH-
Confidence 46689999998877666544 332 22 224444444443321 11 13467789999975 49999987653
Q ss_pred CCCcEEEEecCCC
Q 009670 95 MDLPVVMLSAYSD 107 (529)
Q Consensus 95 ~~ipVIvlTa~~d 107 (529)
.+++|+.+.+...
T Consensus 105 ~gi~V~~lPG~sA 117 (275)
T COG0313 105 AGIRVVPLPGPSA 117 (275)
T ss_pred cCCcEEecCCccH
Confidence 4589999987763
No 330
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=33.25 E-value=5.5e+02 Score=26.32 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCCcEEEEec----CCCHHHHHHHH-hcCCcEeEeCCCC--HHHHHHHHHHHHH
Q 009670 85 FKLLELVGLEMDLPVVMLSA----YSDTKLVMKGI-NHGACDYLLKPVR--MEELKNTWQHVIR 141 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa----~~d~e~v~~al-~~GA~DYL~KP~~--~eeL~~~l~~vlr 141 (529)
..+++.+. ..+|+|++.. ..+.....+.+ +.|+ .+++.+-+ .+.|.+++..++.
T Consensus 263 ~~~~Ea~~--~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~-g~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 263 STVAELAA--AGLPAILVPLPHAADDHQTANARALVDAGA-ALLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred HHHHHHHH--hCCCEEEecCCCCCcCcHHHHHHHHHHCCC-EEEEEcccCCHHHHHHHHHHHHc
Confidence 44555443 4578887743 12222223334 5554 77776644 8999999998875
No 331
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=33.23 E-value=5.9e+02 Score=31.47 Aligned_cols=112 Identities=19% Similarity=0.124 Sum_probs=68.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-------------EEEECC-HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-------------VTVTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-------------V~~a~s-a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL 88 (529)
..||+|+.--......++.+.+..+++ |+++.. .+.|-++.+... ....+-+|+. |--++.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-~~~~v~lDv~----D~e~L~ 643 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-NAEAVQLDVS----DSESLL 643 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC-CCceEEeecC----CHHHHH
Confidence 458999998777766665555544544 666653 344433333221 3456777763 333455
Q ss_pred HHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 89 ELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 89 ~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+.++. .++-|+++-.......+..|+++|+.-+..| ...++.......+.+
T Consensus 644 ~~v~~-~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 644 KYVSQ-VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKAKE 694 (1042)
T ss_pred HhhcC-CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHHHH
Confidence 55543 4554555555667788999999999877777 666666655555443
No 332
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=33.20 E-value=3.5e+02 Score=27.61 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCCceEEEEecCC----C-CCC--HHHHHHHHhcCCCCcEEEEecC-CC-----HHHHHHHHhcCCcE-e
Q 009670 57 ITALKMLRENRNNFDLVISDVYM----P-DMD--GFKLLELVGLEMDLPVVMLSAY-SD-----TKLVMKGINHGACD-Y 122 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~M----P-dmd--GleLL~~Ir~~~~ipVIvlTa~-~d-----~e~v~~al~~GA~D-Y 122 (529)
..|++.++.. ...+|+|+.... | ... .+..+..++...++||++=+.+ .. ......|+.+||++ +
T Consensus 149 ~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~ 227 (260)
T TIGR01361 149 LYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLM 227 (260)
T ss_pred HHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEE
Confidence 4566666543 246899987511 2 112 2333445555557999984444 33 44566788999998 6
Q ss_pred EeCCCC
Q 009670 123 LLKPVR 128 (529)
Q Consensus 123 L~KP~~ 128 (529)
+-|=++
T Consensus 228 iE~H~t 233 (260)
T TIGR01361 228 IEVHPD 233 (260)
T ss_pred EEeCCC
Confidence 666444
No 333
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=33.13 E-value=5.5e+02 Score=26.30 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=61.4
Q ss_pred ccEEEEEe---CCHHHHHHHHHHHHhCCC---eEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 009670 23 GMRVLAVD---DDQTCLKILEKFLRECQY---EVTVT---NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIVD---Dd~~v~~~L~~~Le~~gy---~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~ 93 (529)
.++++|+- +.+.....++..+...+. .+... -+..+..+++.. .|++++=.. .+.-|+-+++.+.
T Consensus 229 ~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a- 302 (388)
T TIGR02149 229 DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA- 302 (388)
T ss_pred cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH-
Confidence 34555553 233444555555544332 13322 234555555542 677766332 2334666666553
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCH------HHHHHHHHHHHH
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRM------EELKNTWQHVIR 141 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~------eeL~~~l~~vlr 141 (529)
..+|||+. .... ..+.+..|.++++.++-+. ++|.+++..++.
T Consensus 303 -~G~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 -CGTPVVAS-ATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred -cCCCEEEe-CCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 35788753 3332 4456677889999999887 788888887754
No 334
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=33.13 E-value=2.2e+02 Score=29.22 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=58.8
Q ss_pred EEEEEeCCHHHHHHHHHHH---H-hCC--CeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH-HHHHHhcCCC
Q 009670 25 RVLAVDDDQTCLKILEKFL---R-ECQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK-LLELVGLEMD 96 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~L---e-~~g--y~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGle-LL~~Ir~~~~ 96 (529)
.|||-|.+-...-.+...+ + ..+ ..+ +.+.+.+++.+.+.. .+|.|.+|-.-| +.+. +++.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~--e~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSP--EELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCH--HHHHHHHHHhccCCC
Confidence 4777777655443333222 2 233 223 367889999988864 489999997655 2332 2334433345
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+| |+.++--+.+.+.+..+.||+.+-+
T Consensus 228 i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 228 VL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 55 5566677788899999999987743
No 335
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=33.09 E-value=1.5e+02 Score=28.11 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=30.1
Q ss_pred CceEEEEecCCCC-----CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009670 69 NFDLVISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 69 ~pDLVIlDi~MPd-----mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~a 114 (529)
.+||||+|=.+.- .+--++++.++..+.--=|++|+..-++...+.
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 5999999954332 344467777776655445668888776665553
No 336
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.90 E-value=3.2e+02 Score=29.08 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=39.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 009670 24 MRVLAVDDDQT----CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (529)
Q Consensus 24 mrVLIVDDd~~----v~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~ 90 (529)
-|+|||-|... ..+.+...|++.++++..+. ...++.+.+++. .+|+||- .-+..-++..+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEG--GCDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 48999987644 33557777877777665442 235666666655 4898764 345566666654
Q ss_pred H
Q 009670 91 V 91 (529)
Q Consensus 91 I 91 (529)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 4
No 337
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=32.82 E-value=5.3e+02 Score=26.04 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 85 FKLLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~---~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
..+++.+. ..+|+|+.... .+.....+.+..+-.+++..+- +.++|.+++..++.
T Consensus 261 ~~l~Ea~~--~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 261 STVAELAA--AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hHHHHHHH--cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 44555442 45788876321 1222233445556677887664 49999999998874
No 338
>CHL00101 trpG anthranilate synthase component 2
Probab=32.63 E-value=57 Score=31.31 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=33.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHhcCCCceEEEE
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAI-TALKMLRENRNNFDLVIS 75 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~-eALe~L~e~~~~pDLVIl 75 (529)
|||||-....-..+.+.|++.|+++....... .+.+ +... .||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~-~~~~--~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSK-IKNL--NIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHH-HhhC--CCCEEEE
Confidence 89999998898999999999998888665432 2222 2222 3787775
No 339
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=32.52 E-value=2.2e+02 Score=28.58 Aligned_cols=72 Identities=26% Similarity=0.258 Sum_probs=42.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH-HHHHHHhcCCCCc
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY----EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF-KLLELVGLEMDLP 98 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy----~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGl-eLL~~Ir~~~~ip 98 (529)
--|-|+.|+.. +...+..|...+. ++.+....++++..+. .+|.+++|.... |-. ++++.++..+.--
T Consensus 71 R~vCIvp~~~~-~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~~--d~~~~vl~~~~~~~~Ga 143 (218)
T PF07279_consen 71 RHVCIVPDEQS-LSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKRE--DFAARVLRAAKLSPRGA 143 (218)
T ss_pred eEEEEcCChhh-HHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCch--hHHHHHHHHhccCCCce
Confidence 34555665555 4555555554443 3344445666665553 489999999853 444 6777766554444
Q ss_pred EEEE
Q 009670 99 VVML 102 (529)
Q Consensus 99 VIvl 102 (529)
||+.
T Consensus 144 VVV~ 147 (218)
T PF07279_consen 144 VVVC 147 (218)
T ss_pred EEEE
Confidence 5543
No 340
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.49 E-value=2.9e+02 Score=29.70 Aligned_cols=63 Identities=27% Similarity=0.273 Sum_probs=40.7
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 009670 24 MRVLAVDDDQT----CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (529)
Q Consensus 24 mrVLIVDDd~~----v~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~ 90 (529)
-|||||-|... ....+...|++.+..+..+. +..++.+.+++. .+|+||- .-|.+-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~--~~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN--NCDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc--CCCEEEE---eCCchHHHHHHH
Confidence 58999987633 34567778887777655443 345677777665 4998874 346666666654
Q ss_pred H
Q 009670 91 V 91 (529)
Q Consensus 91 I 91 (529)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 4
No 341
>PRK05637 anthranilate synthase component II; Provisional
Probab=32.48 E-value=75 Score=31.24 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=45.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE--ecCCCCCCHHHHHHHHhc-CCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS--DVYMPDMDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl--Di~MPdmdGleLL~~Ir~-~~~ipVI 100 (529)
.||+|||-..-+...+..+|++.|+.+.+...... ++.+... .||.||+ .-.-|...+ +..+.++. ...+||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIlsgGPg~~~d~~-~~~~li~~~~~~~PiL 77 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICLSPGPGHPRDAG-NMMALIDRTLGQIPLL 77 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEEeCCCCCHHHhh-HHHHHHHHHhCCCCEE
Confidence 47999999888889999999999988776644322 2222222 3787777 223332222 22233332 2357877
Q ss_pred EEe
Q 009670 101 MLS 103 (529)
Q Consensus 101 vlT 103 (529)
-+.
T Consensus 78 GIC 80 (208)
T PRK05637 78 GIC 80 (208)
T ss_pred EEc
Confidence 664
No 342
>PRK01362 putative translaldolase; Provisional
Probab=32.48 E-value=2.9e+02 Score=27.44 Aligned_cols=80 Identities=19% Similarity=0.036 Sum_probs=49.5
Q ss_pred HHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEec---CCCCCCHHHHHHHHh----cCCCCcEEEEecCCCHHHHH
Q 009670 42 FLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDV---YMPDMDGFKLLELVG----LEMDLPVVMLSAYSDTKLVM 112 (529)
Q Consensus 42 ~Le~~gy~--V~~a~sa~eALe~L~e~~~~pDLVIlDi---~MPdmdGleLL~~Ir----~~~~ipVIvlTa~~d~e~v~ 112 (529)
.|++.|+. ++.+.+..+|+...+.. ++.|-.=+ .-.+.||+++++.+. ....-.-|+..+..+...+.
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~ 172 (214)
T PRK01362 96 ALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVL 172 (214)
T ss_pred HHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHH
Confidence 34555665 34567888888777643 44332211 122578999887542 22222456677778889999
Q ss_pred HHHhcCCcEeEe
Q 009670 113 KGINHGACDYLL 124 (529)
Q Consensus 113 ~al~~GA~DYL~ 124 (529)
++..+|++.+-+
T Consensus 173 ~~~~~G~d~iTi 184 (214)
T PRK01362 173 EAALAGADIATI 184 (214)
T ss_pred HHHHcCCCEEec
Confidence 999999985544
No 343
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=32.46 E-value=2.2e+02 Score=28.17 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=40.5
Q ss_pred Cce-EEEEecCC---CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc-CCcEeEe
Q 009670 69 NFD-LVISDVYM---PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH-GACDYLL 124 (529)
Q Consensus 69 ~pD-LVIlDi~M---PdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~-GA~DYL~ 124 (529)
.+| +++.++.- ...-.+++++.++...++|||+.-+-.+.+.+.++++. ||+..++
T Consensus 162 G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 477 56656531 11224677777766678999999999999999999987 8987765
No 344
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.43 E-value=3.9e+02 Score=28.04 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=30.5
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEec
Q 009670 22 IGMRVLAVDDDQTCL---KILEKFLRECQYEVTVTN---RA----ITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~---~~L~~~Le~~gy~V~~a~---sa----~eALe~L~e~~~~pDLVIlDi 77 (529)
.+.+|+|++-|..-. +.+..+-+..+..+.... +. .+++..... ..+|+||+|.
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDT 204 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDT 204 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 357899998776322 234444445566655432 22 233333222 3599999998
No 345
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.41 E-value=4.7e+02 Score=25.25 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhCCCeEEE--E--C----CHHHHHHHHHhcCCCceEEEEecCC----C-CCCHHHHHHHHhcCCCC
Q 009670 31 DDQTCLKILEKFLRECQYEVTV--T--N----RAITALKMLRENRNNFDLVISDVYM----P-DMDGFKLLELVGLEMDL 97 (529)
Q Consensus 31 Dd~~v~~~L~~~Le~~gy~V~~--a--~----sa~eALe~L~e~~~~pDLVIlDi~M----P-dmdGleLL~~Ir~~~~i 97 (529)
+...+.++++.+-+..++.+.. - . ...+.++.+.+. .+|.|.+.-.- + +.-.++.++.++...++
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~i 184 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEAVSI 184 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCC
Confidence 4444555566554445433221 1 1 223333444433 36766554321 1 22346777778777889
Q ss_pred cEEEEecCCCHHHHHHHHhc-CCcEeE
Q 009670 98 PVVMLSAYSDTKLVMKGINH-GACDYL 123 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~-GA~DYL 123 (529)
|||.--+-.+.+.+.+++.. ||+...
T Consensus 185 pvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 185 PVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred eEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 99998888889999999987 676543
No 346
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.26 E-value=1.9e+02 Score=31.63 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=40.0
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 69 NFDLVISDVYMPD-MDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 69 ~pDLVIlDi~MPd-mdGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.+|+|++|..-+. ..-+++++.++. .|+++|| +-.-...+.+..++++||+...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 5999999998764 455677877764 4677644 4455667888899999998765
No 347
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.18 E-value=3.4e+02 Score=28.47 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=58.3
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHhcCCCceEEEEecCCCCCC
Q 009670 25 RVLAV--DDDQT---CLKILEKFLRECQYEVTVTNRAITALKM----------------LRENRNNFDLVISDVYMPDMD 83 (529)
Q Consensus 25 rVLIV--DDd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~----------------L~e~~~~pDLVIlDi~MPdmd 83 (529)
+|.|+ .+.+. ....+..+|++.|+++.......+.+.. .......+|+||+ -|.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 46666 33333 3455666777789888765433222210 0111113677776 3678
Q ss_pred HHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 84 GFKLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 84 GleLL~~Ir--~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|- +|+..+ ...++||+-+- .|=.+||. .++.+++...+..+++.
T Consensus 79 GT-lL~aar~~~~~~iPilGIN-------------~G~lGFLt-~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 79 GT-VLSAARQLAPCGIPLLTIN-------------TGHLGFLT-EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred HH-HHHHHHHhcCCCCcEEEEe-------------CCCCcccc-cCCHHHHHHHHHHHHcC
Confidence 83 444333 24578887653 36677887 47789999999998765
No 348
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=32.17 E-value=3.3e+02 Score=28.01 Aligned_cols=77 Identities=19% Similarity=0.143 Sum_probs=51.7
Q ss_pred HhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH----HHH-hcCC-CCcEEEEecCCCHHHHHHHHh
Q 009670 44 RECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL----ELV-GLEM-DLPVVMLSAYSDTKLVMKGIN 116 (529)
Q Consensus 44 e~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL----~~I-r~~~-~ipVIvlTa~~d~e~v~~al~ 116 (529)
+..|.++. .+.+.+|+-++++. +.-|+.++--+...+++- +.+ ...| +.-+|.-||-...+.+.+...
T Consensus 153 ~~LGm~~LVEVh~~eEl~rAl~~-----ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~ 227 (254)
T COG0134 153 HELGMEVLVEVHNEEELERALKL-----GAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAK 227 (254)
T ss_pred HHcCCeeEEEECCHHHHHHHHhC-----CCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHH
Confidence 45688855 67899888888862 233555555555554432 222 2222 344566678889999999999
Q ss_pred cCCcEeEeC
Q 009670 117 HGACDYLLK 125 (529)
Q Consensus 117 ~GA~DYL~K 125 (529)
+||+.||+-
T Consensus 228 ~ga~a~LVG 236 (254)
T COG0134 228 AGADAFLVG 236 (254)
T ss_pred cCCCEEEec
Confidence 999999975
No 349
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.96 E-value=2.3e+02 Score=29.84 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=46.8
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEE--E------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 24 MRVLAVDDDQTC---LKILEKFLRECQYEVTV--T------NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 24 mrVLIVDDd~~v---~~~L~~~Le~~gy~V~~--a------~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
-|+|||-|.... ...+...|+..+..+.. + .+..++.+.+++. .+|+||- +-+..-+++.+.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDN--GADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhc--CCCEEEE---ecCchhhHHHHHHH
Confidence 688888876443 33445556665655421 1 2335566666554 4898764 46777788888765
Q ss_pred cCCCCcEEEEec
Q 009670 93 LEMDLPVVMLSA 104 (529)
Q Consensus 93 ~~~~ipVIvlTa 104 (529)
....+|+|.+..
T Consensus 98 ~~~~~P~iaIPT 109 (351)
T cd08170 98 DYLGAPVVIVPT 109 (351)
T ss_pred HHcCCCEEEeCC
Confidence 445678877743
No 350
>PRK10060 RNase II stability modulator; Provisional
Probab=31.92 E-value=3.7e+02 Score=30.95 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=67.8
Q ss_pred HHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCC----C-CCCHHHHHHHH-h--cCCCCcEEEEecCC
Q 009670 37 KILEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYM----P-DMDGFKLLELV-G--LEMDLPVVMLSAYS 106 (529)
Q Consensus 37 ~~L~~~Le~~gy~V~~--a~sa~eALe~L~e~~~~pDLVIlDi~M----P-dmdGleLL~~I-r--~~~~ipVIvlTa~~ 106 (529)
..+-..|++.|+.+.. +.++...+..|...+ +|.|=+|-.+ . +.....+++.+ . ...++.|| ..+-.
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCC
Confidence 3344566778998775 567788888888765 9999999532 2 23445566533 2 33455555 55777
Q ss_pred CHHHHHHHHhcCCc----EeEeCCCCHHHHHHHHHHH
Q 009670 107 DTKLVMKGINHGAC----DYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 107 d~e~v~~al~~GA~----DYL~KP~~~eeL~~~l~~v 139 (529)
+.+....+.+.|++ .|+.||...+++...+++.
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~ 657 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRY 657 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhh
Confidence 77777777789986 3588999999987766543
No 351
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=31.88 E-value=81 Score=31.80 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=41.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhC--C---CeEE-EECCHHHHHHHHHhcCC-CceEEEEecCCCCCCH
Q 009670 19 KFPIGMRVLAVDDDQTCLKILEKFLREC--Q---YEVT-VTNRAITALKMLRENRN-NFDLVISDVYMPDMDG 84 (529)
Q Consensus 19 ~~p~~mrVLIVDDd~~v~~~L~~~Le~~--g---y~V~-~a~sa~eALe~L~e~~~-~pDLVIlDi~MPdmdG 84 (529)
+.|...+|-+||=|+.+.+..++++... + -++. ...++..- +++... .+|+||+|+.-|...+
T Consensus 96 ~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~---l~~~~~~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 96 KHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF---LKETQEEKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp TSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH---HHTSSST-EEEEEEESSSTTSCG
T ss_pred hcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH---HHhccCCcccEEEEeCCCCCCCc
Confidence 3444468999999999999999988642 1 1333 44655544 454444 6999999998776443
No 352
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=31.80 E-value=64 Score=33.49 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=39.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQ-----YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~g-----y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
-+|.+||=|+.+.+.-+++|.... -++. ...+ +.+.++.....+|+||+|..-|.
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D---g~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD---GVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc---HHHHHHhCCCcCCEEEEcCCCCC
Confidence 589999999999999999986421 1233 3344 55555555446999999998883
No 353
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=31.79 E-value=1.1e+02 Score=30.16 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=32.9
Q ss_pred EEecCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHH
Q 009670 74 ISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKN 134 (529)
Q Consensus 74 IlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~ 134 (529)
++.+.|-.-+.++.++.++ ..+++ +|=.-.-.+.+.+.+++++||.-.+. |.-.+++.+
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivS-P~~~~~v~~ 95 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVS-PGFDPEVIE 95 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEE-SS--HHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEEC-CCCCHHHHH
Confidence 4555555567788887554 34442 33344456778899999999965554 643333433
No 354
>PLN02775 Probable dihydrodipicolinate reductase
Probab=31.59 E-value=5.2e+02 Score=27.02 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=55.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE------------------------CCHHHHHHHHHhcCCCceEEEEecC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVT------------------------NRAITALKMLRENRNNFDLVISDVY 78 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a------------------------~sa~eALe~L~e~~~~pDLVIlDi~ 78 (529)
.+||+|..---.+-..+.+.+.+.+++++-+ .+.++++..+... .||+|++|+.
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~--~~~~VvIDFT 88 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE--YPNLIVVDYT 88 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc--CCCEEEEECC
Confidence 4788888877666665555554466665532 3334444333222 4999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc-CCcEeEeCCCCHH
Q 009670 79 MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH-GACDYLLKPVRME 130 (529)
Q Consensus 79 MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~-GA~DYL~KP~~~e 130 (529)
.|+. -.+.++.... ..+|+|+=|.--+.+...+..+. ++--++.-.|+..
T Consensus 89 ~P~a-~~~~~~~~~~-~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiG 139 (286)
T PLN02775 89 LPDA-VNDNAELYCK-NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQ 139 (286)
T ss_pred ChHH-HHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHH
Confidence 9862 2334443322 34665555544444444443333 4333333336653
No 355
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=31.58 E-value=6.5e+02 Score=26.69 Aligned_cols=99 Identities=9% Similarity=0.085 Sum_probs=61.5
Q ss_pred cEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecC----------CC-CCC--
Q 009670 24 MRVLAVDD----DQTCLKILEKFLRECQ-YEVT--VTNRAITALKMLRENRNNFDLVISDVY----------MP-DMD-- 83 (529)
Q Consensus 24 mrVLIVDD----d~~v~~~L~~~Le~~g-y~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~----------MP-dmd-- 83 (529)
..++++|- ...+.+.++.+-+... ..|. .+.+.+.|..+++. ..|.|.+-+. +. +..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~ 185 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGW 185 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCch
Confidence 36677775 2444455555444433 2222 24577778777754 3677764421 11 111
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
++..+..++...++|||.-.+-.....+.+|+.+||+...+-
T Consensus 186 ~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 186 QLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 344555555555789999999999999999999999988664
No 356
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.52 E-value=5.3e+02 Score=28.51 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=30.8
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CHHH-HHHHHHhcCCCceEEEEecC
Q 009670 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTN---RAIT-ALKMLRENRNNFDLVISDVY 78 (529)
Q Consensus 23 ~mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~---sa~e-ALe~L~e~~~~pDLVIlDi~ 78 (529)
+.+|++|+-|.. ....++.+.+..+..+.... ++.+ +.+.++... ..|+||+|.-
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA 184 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA 184 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC
Confidence 478888887753 23345555555666655432 3222 223333322 3699999984
No 357
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=31.51 E-value=3.9e+02 Score=30.20 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=58.2
Q ss_pred cEEEEE--eCCHHHHHHH---HHHHH-hCCCeEEEECCHHHHHH----------------HHHhcCCCceEEEEecCCCC
Q 009670 24 MRVLAV--DDDQTCLKIL---EKFLR-ECQYEVTVTNRAITALK----------------MLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 24 mrVLIV--DDd~~v~~~L---~~~Le-~~gy~V~~a~sa~eALe----------------~L~e~~~~pDLVIlDi~MPd 81 (529)
.+|+|| -+.+.....+ ..+|+ ..|++|.........+. .+.+....+|+||+ -|
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iG 270 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LG 270 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----EC
Confidence 467777 4555555444 44455 46777776543222210 00001123677766 37
Q ss_pred CCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 82 MDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 82 mdGleLL~~Ir--~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
.||- +|+..+ ....+||+-+ ..|=.+||. ++.++++...+..+++.
T Consensus 271 GDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 271 GDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKG 318 (508)
T ss_pred CcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcC
Confidence 7885 333332 2346787743 467788985 78999999999999865
No 358
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=31.28 E-value=4.3e+02 Score=25.70 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
|..+++.+. ..+|||+ |.... ..+.+..|..+++..+-+.+++.+++..++.
T Consensus 277 ~~~~~Ea~~--~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 277 PRVLLEAMA--MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred chHHHHHHH--cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 555666543 3468875 33332 2344566788899999999999999988764
No 359
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=31.26 E-value=4.5e+02 Score=26.12 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=52.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCC-------CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMP-------DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MP-------dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+.+.+++++..+. .+|-|.+.-..| .-.|++.+++++....+|+|.|-+- +.+.+.+.++.||+..-.
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAv 185 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLEAGADGVAV 185 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHhCCCeEEe
Confidence 56788888887654 389998876544 3568999998876666999988765 567888999999997643
No 360
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.18 E-value=3.6e+02 Score=28.35 Aligned_cols=92 Identities=12% Similarity=0.007 Sum_probs=58.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---CC--CeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 25 RVLAVDDDQTCLKILEKFLRE---CQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~---~g--y~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
-|||=|.+-...-.+...+++ .. ..| +.+.+.+++.+.++. .+|+|.+|-.-|+ +--+.++.++ .-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe-~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD-MMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHhhc---CCe
Confidence 367777665555445554432 11 223 367899999999864 4899999964443 2222333332 234
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
+|-.++--+.+.+.+....|++-.-
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRIS 275 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 6778888899999998899987553
No 361
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.14 E-value=2.9e+02 Score=25.40 Aligned_cols=53 Identities=28% Similarity=0.359 Sum_probs=28.8
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CHHHH----HHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCL---KILEKFLRECQYEVTVTN---RAITA----LKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~---~~L~~~Le~~gy~V~~a~---sa~eA----Le~L~e~~~~pDLVIlDi 77 (529)
+.+|++||-|..-. +.+..+.+..+..+.... +..+. ++.+.. ..+|+||+|.
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt 90 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDT 90 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 57899999775322 233333444565555432 33322 222222 2589999998
No 362
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=30.89 E-value=2.3e+02 Score=28.60 Aligned_cols=74 Identities=8% Similarity=0.077 Sum_probs=40.9
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCeEEEE-------------CCHHHHHHHHHhc-CCCceEEEEe-cCCCCCCHHHH
Q 009670 24 MRVLAVDDD-QTCLKILEKFLRECQYEVTVT-------------NRAITALKMLREN-RNNFDLVISD-VYMPDMDGFKL 87 (529)
Q Consensus 24 mrVLIVDDd-~~v~~~L~~~Le~~gy~V~~a-------------~sa~eALe~L~e~-~~~pDLVIlD-i~MPdmdGleL 87 (529)
-||-|+--- +.+-..++.+|+..||+|+.. -+.+...+++++. ..++|.|++- .+| -.+++
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnL---rt~~v 197 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTAL---RAATC 197 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCc---hhHHH
Confidence 366666544 445567888888888887643 1334444444432 1245544443 333 35556
Q ss_pred HHHHhcCCCCcEE
Q 009670 88 LELVGLEMDLPVV 100 (529)
Q Consensus 88 L~~Ir~~~~ipVI 100 (529)
++.+.....+|||
T Consensus 198 i~~lE~~lGkPVl 210 (239)
T TIGR02990 198 AQRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHHHCCCEE
Confidence 6655545556664
No 363
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=30.88 E-value=1.4e+02 Score=28.97 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCceEEEEecCCC-----CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009670 68 NNFDLVISDVYMP-----DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 68 ~~pDLVIlDi~MP-----dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~a 114 (529)
..+|+||+|=.+. =.+--++++.++..|.--=|++|++.-.+...+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 3699999995433 1355567777766555445668998877666553
No 364
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.86 E-value=5.9e+02 Score=25.91 Aligned_cols=58 Identities=10% Similarity=0.235 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE------eCCCCHHHHHHHHHHHHHh
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL------LKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL------~KP~~~eeL~~~l~~vlr~ 142 (529)
+++++.++...++|||...+-.+.+.+.+++..||+... .-|.-+.++.+-+.+.+++
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~ 283 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDE 283 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHH
Confidence 466777766668999999999999999999999987653 2344445555555554443
No 365
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=30.82 E-value=5e+02 Score=25.07 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=39.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.|++|+-... +.-|..+++.+. ..+|||+. ... ...+.+..|..+|+.++-+.+.+...++.+..
T Consensus 264 ~d~~i~ps~~-e~~~~~~~Ea~~--~G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~ 328 (353)
T cd03811 264 ADLFVLSSRY-EGFPNVLLEAMA--LGTPVVAT-DCP---GPREILEDGENGLLVPVGDEAALAAAALALLD 328 (353)
T ss_pred CCEEEeCccc-CCCCcHHHHHHH--hCCCEEEc-CCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHHh
Confidence 3455443322 222445555443 35677753 222 34566788899999999999998766666543
No 366
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=30.67 E-value=1e+02 Score=29.61 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred CCceEEEEecCC-----CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009670 68 NNFDLVISDVYM-----PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 68 ~~pDLVIlDi~M-----PdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~a 114 (529)
..+|+||+|=.+ -=.+--++++.++..+.--=||+|+..-++.+.+.
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 369999999432 22455667777775555445678998877666554
No 367
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=30.65 E-value=5.2e+02 Score=25.23 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=38.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
.|++|+-... +.-|..+++.+. ..+|||+ +.... ..+.+.. .+++.++-+.+++...+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a--~g~PvI~-~~~~~---~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA--CGLPVVA-TDVGD---NAELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh--cCCCEEE-cCCCC---hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 4566654333 233555666543 3578775 33322 2233333 67889999999999999988753
No 368
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=30.60 E-value=2.6e+02 Score=29.35 Aligned_cols=91 Identities=7% Similarity=0.017 Sum_probs=56.7
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC-Ce-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 26 VLAVDDDQTCLKILEKFLRE----CQ-YE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~----~g-y~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
|||-|.+-...-.+...+++ .. .. .+.+.+.+++.+.++. .+|+|.+|-.-|+ +--+.+++++ .-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~e-~~~~av~~~~---~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTTE-QMREAVKRTN---GRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCChH-HHHHHHHhhc---CCeE
Confidence 55555554444334444432 22 12 3467899999999874 3899999975542 2222233322 2236
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeE
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL 123 (529)
|..++--+.+.+.+..+.|++.+-
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 777888899999999999997653
No 369
>PRK05670 anthranilate synthase component II; Provisional
Probab=30.55 E-value=70 Score=30.54 Aligned_cols=48 Identities=23% Similarity=0.253 Sum_probs=32.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
|||||-....-..+.++|++.|+++..........+.+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999998898999999999898877653321111222222 3786666
No 370
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.47 E-value=3.4e+02 Score=28.07 Aligned_cols=92 Identities=11% Similarity=-0.037 Sum_probs=56.8
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--eE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 25 RVLAVDDDQTCLKILEKFLR----ECQY--EV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le----~~gy--~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
.|||-|.+-...-.+...++ ..+. .+ +.+.+.+++.+.+.. .+|.|.+|- =|.+.++.+......
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 47777776555544444442 2332 23 367899999888753 489999973 244555544322122
Q ss_pred c-EEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 98 P-VVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 98 p-VIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
| +|+.++--+.+.+.+..+.||+.+-+
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3 24455666788898999999987643
No 371
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=30.46 E-value=1.9e+02 Score=30.98 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=39.3
Q ss_pred CceEEEEecCCCCC-CHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 69 NFDLVISDVYMPDM-DGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 69 ~pDLVIlDi~MPdm-dGleLL~~Ir~~-~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.+|+|++|+---.. .-++.+++++.. ++ +.|+--.-...+.+..++++||+...+-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 58999999965433 246677777653 44 3443444677888999999999988654
No 372
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=30.45 E-value=3.3e+02 Score=30.90 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=62.7
Q ss_pred HHHHHHHHhCCCeEEE--ECCHHHHHHHHHh---cCCCceEEEEecC----CCCCCHHHHHHHH---hcCCCCcEEEEec
Q 009670 37 KILEKFLRECQYEVTV--TNRAITALKMLRE---NRNNFDLVISDVY----MPDMDGFKLLELV---GLEMDLPVVMLSA 104 (529)
Q Consensus 37 ~~L~~~Le~~gy~V~~--a~sa~eALe~L~e---~~~~pDLVIlDi~----MPdmdGleLL~~I---r~~~~ipVIvlTa 104 (529)
..+...|++.|+.+.. +..+...+..++. .+ ||.|=+|-. ++. + -.+++.+ ....++.|| ..+
T Consensus 542 ~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~--~d~iKid~~~~~~~~~-~-~~~~~~i~~~a~~l~~~vi-aeg 616 (660)
T PRK11829 542 LRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLP--IHMIKLDKSFVKNLPE-D-DAIARIISCVSDVLKVRVM-AEG 616 (660)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCC--CcEEEECHHHHhcccC-C-HHHHHHHHHHHHHcCCeEE-Eec
Confidence 3344556778988774 5677788888877 54 999999842 222 2 1233322 233455544 667
Q ss_pred CCCHHHHHHHHhcCCc----EeEeCCCCHHHHHHHH
Q 009670 105 YSDTKLVMKGINHGAC----DYLLKPVRMEELKNTW 136 (529)
Q Consensus 105 ~~d~e~v~~al~~GA~----DYL~KP~~~eeL~~~l 136 (529)
-.+.+....+.+.|++ .|+.||...+++....
T Consensus 617 VEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 617 VETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred CCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 7777777788899995 3688999998876654
No 373
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.44 E-value=3.9e+02 Score=26.40 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=44.0
Q ss_pred EEEECCHHHHHHHHHhcC-CCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCC
Q 009670 50 VTVTNRAITALKMLRENR-NNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPV 127 (529)
Q Consensus 50 V~~a~sa~eALe~L~e~~-~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~ 127 (529)
|....+.+++++..+... ..+.++=+.++ .-+.++.++.++. .+++. |=.-.-.+.+.+.+++++||.- ++-|.
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~--t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~aGA~F-ivsP~ 88 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLR--TPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDAGAQF-IVSPG 88 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCC--CccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCE-EECCC
Confidence 334455666655544321 13554444443 3457777776653 34422 2233445778889999999964 45564
Q ss_pred CHHHHHHH
Q 009670 128 RMEELKNT 135 (529)
Q Consensus 128 ~~eeL~~~ 135 (529)
-..++.+.
T Consensus 89 ~~~~v~~~ 96 (204)
T TIGR01182 89 LTPELAKH 96 (204)
T ss_pred CCHHHHHH
Confidence 44444433
No 374
>PRK08185 hypothetical protein; Provisional
Probab=30.29 E-value=1.9e+02 Score=30.16 Aligned_cols=66 Identities=15% Similarity=0.344 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhcCCCceEEEEec------C----CCCCCHHHHHHHHhcCCCCcEEEEecC-CCHHHHHHHHhcCCcEe
Q 009670 54 NRAITALKMLRENRNNFDLVISDV------Y----MPDMDGFKLLELVGLEMDLPVVMLSAY-SDTKLVMKGINHGACDY 122 (529)
Q Consensus 54 ~sa~eALe~L~e~~~~pDLVIlDi------~----MPdmdGleLL~~Ir~~~~ipVIvlTa~-~d~e~v~~al~~GA~DY 122 (529)
++.++|.+..+.. .+|.+-+-+ . -|+.+ +++++.++...++|+++.-+. ...+..+++++.|++-+
T Consensus 149 t~peea~~f~~~T--gvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 149 TDPEQAEDFVSRT--GVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred CCHHHHHHHHHhh--CCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 4778888888764 378777632 1 24555 888988876678999988655 34566788999998654
No 375
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=30.29 E-value=3.9e+02 Score=28.23 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 009670 24 MRVLAVDDDQTCL-----KILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 24 mrVLIVDDd~~v~-----~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~ 89 (529)
-|+|||-|..... ..+...|+..++++..+. +..++.+.+++.. +|+||- .-+.+-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHH
Confidence 6899998876522 557777887777665442 2455666666654 898875 35666666665
Q ss_pred HH
Q 009670 90 LV 91 (529)
Q Consensus 90 ~I 91 (529)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 33
No 376
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=30.23 E-value=3.6e+02 Score=28.77 Aligned_cols=63 Identities=14% Similarity=0.253 Sum_probs=39.6
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 009670 24 MRVLAVDDDQTC----LKILEKFLRECQYEVTVTNR---------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (529)
Q Consensus 24 mrVLIVDDd~~v----~~~L~~~Le~~gy~V~~a~s---------a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~ 90 (529)
-|+|||-|.... ...++..|+..+.++..+.. ..++.+.+++. .+|+||- .-+.+-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--GCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcHHHHHHHH
Confidence 489999876543 34577778777776665432 34566666654 4898874 345566666654
Q ss_pred H
Q 009670 91 V 91 (529)
Q Consensus 91 I 91 (529)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 4
No 377
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=30.21 E-value=3e+02 Score=27.93 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=44.0
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC
Q 009670 23 GMRVLAV-DDDQTCLKILEKFLRECQYEVTVTNR-------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE 94 (529)
Q Consensus 23 ~mrVLIV-DDd~~v~~~L~~~Le~~gy~V~~a~s-------a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~ 94 (529)
+.+|.++ .+++.. +...++..||.|....+ ..+.++.+++. .||+||+|.. ..+. +..+.++.
T Consensus 31 g~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~--~~d~vV~D~y--~~~~-~~~~~~k~- 101 (279)
T TIGR03590 31 GAEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLEEE--KFDILIVDHY--GLDA-DWEKLIKE- 101 (279)
T ss_pred CCEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhc--CCCEEEEcCC--CCCH-HHHHHHHH-
Confidence 5665555 443332 24566778998875532 44566777654 4999999985 3232 23344442
Q ss_pred CCCcEEEEecCC
Q 009670 95 MDLPVVMLSAYS 106 (529)
Q Consensus 95 ~~ipVIvlTa~~ 106 (529)
...+++++....
T Consensus 102 ~~~~l~~iDD~~ 113 (279)
T TIGR03590 102 FGRKILVIDDLA 113 (279)
T ss_pred hCCeEEEEecCC
Confidence 244677777654
No 378
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.18 E-value=1.9e+02 Score=26.92 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE-EEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 59 ALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV-MLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 59 ALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI-vlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
..++|++. +||+||+=.-++..=.+..++..+....+|++ ++|.... .-...+.-|++-|++-
T Consensus 81 l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~--~H~~W~~~~~D~y~Va 144 (169)
T PF06925_consen 81 LIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDT--VHPFWIHPGVDRYFVA 144 (169)
T ss_pred HHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCC--CCcCeecCCCCEEEEC
Confidence 33445554 59999998877643224444444434467754 6665421 1234567788888873
No 379
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=30.17 E-value=7.3e+02 Score=26.82 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=43.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecC-------CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 55 RAITALKMLRENRNNFDLVISDVY-------MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~-------MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+..+..+.+.+. ..|+|+++-. -...+-.++.+.++ ..++|||+ ..-.+.+.+.++++.||+..+.
T Consensus 143 ~~~e~a~~l~eA--Gad~I~ihgrt~~q~~~sg~~~p~~l~~~i~-~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~ 215 (369)
T TIGR01304 143 NAREIAPIVVKA--GADLLVIQGTLVSAEHVSTSGEPLNLKEFIG-ELDVPVIA-GGVNDYTTALHLMRTGAAGVIV 215 (369)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCCCCHHHHHHHHH-HCCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 455655666554 4899998732 12334445555554 35789886 5667788889999999998873
No 380
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=30.13 E-value=4.5e+02 Score=26.62 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=48.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEEC----CH---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTVTN----RA---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~~a~----sa---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~ 94 (529)
+.+|.++...+.+.+.+.+.|++ .+.++..+. +. ++.++.+... .+|+|++-+.+|...- ++...+..
T Consensus 105 ~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s--~~dil~VglG~PkQE~--~~~~~~~~ 180 (243)
T PRK03692 105 GTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHAS--GAKIVTVAMGSPKQEI--FMRDCRLV 180 (243)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhc--CCCEEEEECCCcHHHH--HHHHHHHh
Confidence 58999999999999998888865 455554322 12 2234555544 4999999999997544 34433333
Q ss_pred CCCcEEE
Q 009670 95 MDLPVVM 101 (529)
Q Consensus 95 ~~ipVIv 101 (529)
...+|++
T Consensus 181 ~~~~v~~ 187 (243)
T PRK03692 181 YPDALYM 187 (243)
T ss_pred CCCCEEE
Confidence 3445544
No 381
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=30.09 E-value=5.4e+02 Score=26.48 Aligned_cols=70 Identities=14% Similarity=0.049 Sum_probs=46.9
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCC-----CCCCHHHHHHHHhc-C-CCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 53 TNRAITALKMLRENRNNFDLVISDVYM-----PDMDGFKLLELVGL-E-MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 53 a~sa~eALe~L~e~~~~pDLVIlDi~M-----PdmdGleLL~~Ir~-~-~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+.+.++|..+.+. .+|.|.+.-+- .+...++++..++. . .++|||.-.+-.+...+.+++.+||+...+=
T Consensus 180 v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3566666655542 37777665321 12234566665543 2 2699999999999999999999999986553
No 382
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=30.01 E-value=3.4e+02 Score=27.23 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=52.6
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCCC---CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 53 TNRAITALKMLRENRNNFDLVISDVYMPD---MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 53 a~sa~eALe~L~e~~~~pDLVIlDi~MPd---mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
..+..+..+.+.+.. --.|.++|+.-.+ ..-+++++.+.....+||++--+-.+.+.+.+++..||+..++-
T Consensus 29 ~~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 29 AGDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347777777776532 2358888987543 23355677776666799999999999999999999998887664
No 383
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=29.91 E-value=3.3e+02 Score=26.58 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=36.6
Q ss_pred CHHHH---HHHHHHHHhCCCeEEEEC--CHH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 32 DQTCL---KILEKFLRECQYEVTVTN--RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 32 d~~v~---~~L~~~Le~~gy~V~~a~--sa~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
++... ..+++.+++.||++.... +.+ +.++.+... .+|-||+ +|......+.+.+...+.+|||++.
T Consensus 13 ~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii---~~~~~~~~~~~~~~~~~~ipvv~~~ 87 (260)
T cd06304 13 KSFNQSAYEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQ--GYDLIFG---VGFGFMDAVEKVAKEYPDVKFAIID 87 (260)
T ss_pred chHHHHHHHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHc--CCCEEEE---CCcchhHHHHHHHHHCCCCEEEEec
Confidence 45555 445556667899877543 222 334444433 4886665 2321122343444444578988886
Q ss_pred cC
Q 009670 104 AY 105 (529)
Q Consensus 104 a~ 105 (529)
..
T Consensus 88 ~~ 89 (260)
T cd06304 88 GV 89 (260)
T ss_pred Cc
Confidence 54
No 384
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=29.90 E-value=1.9e+02 Score=31.48 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE---VT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~---V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
-+|.-||-++......++-++..++. +. ...+..+.+..+......+|+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 48999999999999999999877663 33 45677777655543233599999994
No 385
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=29.81 E-value=3e+02 Score=29.13 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+++.+.++....+|||..-...+.+...++++.|..|++.
T Consensus 265 ~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 265 AWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred HHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 4556677777789999887888899999999999887753
No 386
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.66 E-value=1.3e+02 Score=29.40 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=35.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
.|||.|||----....+.+.|++.|+ ++....+.+++ ..+|.||+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l--------~~~d~lIl 47 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV--------AAADRVVL 47 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh--------cCCCEEEE
Confidence 48999999888888889999999888 77777776553 14888887
No 387
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=29.65 E-value=2.3e+02 Score=29.56 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=49.8
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE--ecCCCCC-----CHHHHHHHHhcC
Q 009670 23 GMRVLAVDDDQTCL-KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS--DVYMPDM-----DGFKLLELVGLE 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v~-~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl--Di~MPdm-----dGleLL~~Ir~~ 94 (529)
..+|+|+|..|... ..+...|.+.|..++...+..-+.-+ . .+|.||+ |-.+.+. -|--.+..+.+.
T Consensus 141 ~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m-~----~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~ 215 (301)
T TIGR00511 141 DIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFM-K----EVDHVVVGADAITANGALINKIGTSQLALAARE 215 (301)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEEEHHhHHHHHHHHHH
Confidence 47888888887643 44566677778888876665444433 2 2788887 4455543 344445555556
Q ss_pred CCCcEEEEecCC
Q 009670 95 MDLPVVMLSAYS 106 (529)
Q Consensus 95 ~~ipVIvlTa~~ 106 (529)
.++||++++...
T Consensus 216 ~~vPv~V~a~~~ 227 (301)
T TIGR00511 216 ARVPFMVAAETY 227 (301)
T ss_pred hCCCEEEEcccc
Confidence 688998887643
No 388
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=29.61 E-value=1.5e+02 Score=29.00 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCceEEEEecCCCC-----CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009670 68 NNFDLVISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 68 ~~pDLVIlDi~MPd-----mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~ 113 (529)
..+|+||+|=.+.- .+--++++.|+..|.--=|++|+..-++.+.+
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 36999999954332 34556777776555444566888876665544
No 389
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=29.55 E-value=91 Score=31.99 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=37.6
Q ss_pred HHHHHHHHh-cCCCCcEEEEecCC------CHHHHHHHHhcCCcEeEeCCCCHHHHHHH
Q 009670 84 GFKLLELVG-LEMDLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNT 135 (529)
Q Consensus 84 GleLL~~Ir-~~~~ipVIvlTa~~------d~e~v~~al~~GA~DYL~KP~~~eeL~~~ 135 (529)
.+++++.++ ...++|+|+||-+. -.....++-++|+++.|+--+..++-...
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~ 132 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEEL 132 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 466677776 78899999998643 33456777799999999976776655433
No 390
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=29.43 E-value=6.4e+02 Score=25.87 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=58.7
Q ss_pred ccEEEEEeCCH-------HHHHHHHHHHHh-CCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 009670 23 GMRVLAVDDDQ-------TCLKILEKFLRE-CQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (529)
Q Consensus 23 ~mrVLIVDDd~-------~v~~~L~~~Le~-~gy--~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~ 90 (529)
.++++|+.+.+ .....++..+++ .+. .|.... ...+..+++.. .|++++-.... .-|+-+++.
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~E-~~g~~~lEA 319 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSNE-HFGIVPLEA 319 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCcC-CCCchHHHH
Confidence 46666665432 123444555544 333 233332 22333344432 57777643322 235555665
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 91 Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+. ..+|||..- ... ..+.+..|..+|+..+ +.+++.+.+..++..
T Consensus 320 ma--~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 320 MY--AGKPVIACN-SGG---PLETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred HH--cCCCEEEEC-CCC---cHHHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 43 357887643 222 2344566778898876 899999988887653
No 391
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=29.25 E-value=2.1e+02 Score=29.55 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=53.4
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEec---C-C----CCCCHHHHHHHHhcCCCCcEEEEec-CCCHHHHHHHHhcCCcEeE
Q 009670 53 TNRAITALKMLRENRNNFDLVISDV---Y-M----PDMDGFKLLELVGLEMDLPVVMLSA-YSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 53 a~sa~eALe~L~e~~~~pDLVIlDi---~-M----PdmdGleLL~~Ir~~~~ipVIvlTa-~~d~e~v~~al~~GA~DYL 123 (529)
.++.++|.+..++. .+|.+-..+ + + |. =++++++.++...++|+++.-+ .-+.+.+.+++++|++..=
T Consensus 152 ~t~~eea~~f~~~t--gvD~Lavs~Gt~hg~~~~~~~-l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKET--GVDYLAAAIGTSHGKYKGEPG-LDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHH--CcCEEeeccCccccccCCCCc-cCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 45889999888643 378777442 1 1 22 3588888887666799988863 3345678889999998875
Q ss_pred eCCCCHHHHHHHHHHHH
Q 009670 124 LKPVRMEELKNTWQHVI 140 (529)
Q Consensus 124 ~KP~~~eeL~~~l~~vl 140 (529)
.-. +|..++...+
T Consensus 229 v~T----~l~~a~~~~~ 241 (282)
T TIGR01859 229 IDT----DCRIAFTAAI 241 (282)
T ss_pred ECc----HHHHHHHHHH
Confidence 533 3444444443
No 392
>PLN00191 enolase
Probab=29.21 E-value=4.5e+02 Score=29.26 Aligned_cols=108 Identities=16% Similarity=0.287 Sum_probs=65.7
Q ss_pred EeCCHHHHHHHHHHHHhCCCe--EEE-----------------------------ECCHHHHHHHHHhcCCCceEEEEec
Q 009670 29 VDDDQTCLKILEKFLRECQYE--VTV-----------------------------TNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 29 VDDd~~v~~~L~~~Le~~gy~--V~~-----------------------------a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
++++...++.+.+.+++.||+ |.. .-+.++++++++...++++++.+.=
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 567788888888888866653 110 1277888888887554577777654
Q ss_pred CCCCCCHHHHHHHHhcCCCCcEEEEec-CCCHHHHHHHHhcCCcE-eEeCCCCHHHHHHHHH
Q 009670 78 YMPDMDGFKLLELVGLEMDLPVVMLSA-YSDTKLVMKGINHGACD-YLLKPVRMEELKNTWQ 137 (529)
Q Consensus 78 ~MPdmdGleLL~~Ir~~~~ipVIvlTa-~~d~e~v~~al~~GA~D-YL~KP~~~eeL~~~l~ 137 (529)
-++.. .++-.+.++....+||+.==. ..+.....++++.++++ +++|+-..--|-.+++
T Consensus 319 Pl~~~-D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~ 379 (457)
T PLN00191 319 PFDQD-DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIE 379 (457)
T ss_pred CCCcc-cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHH
Confidence 44432 344444454445566443111 24577888999888765 6788865444444333
No 393
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=29.20 E-value=2.9e+02 Score=28.74 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=48.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEEEE-----CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY-EVTVT-----NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy-~V~~a-----~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
-|++||-|... ...+...|+..+. .+... .+.+++.+.++... ++|+||- .-+..-+|+.+.+.....+
T Consensus 26 ~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~d~iIa---iGGGsv~D~aK~vA~~~~~ 100 (331)
T cd08174 26 GRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP-NVDAVVG---IGGGKVIDVAKYAAFLRGI 100 (331)
T ss_pred CceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc-CCCEEEE---eCCcHHHHHHHHHHhhcCC
Confidence 57888887655 5566677766544 33322 35566666666543 5788773 4566777888877656678
Q ss_pred cEEEEe
Q 009670 98 PVVMLS 103 (529)
Q Consensus 98 pVIvlT 103 (529)
|+|.+.
T Consensus 101 p~i~vP 106 (331)
T cd08174 101 PLSVPT 106 (331)
T ss_pred CEEEec
Confidence 887774
No 394
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=29.04 E-value=1.8e+02 Score=30.79 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCcCCcCCCCCCccE--EEEEeCCH-------HHHHHHHHHHHhCCCeEE
Q 009670 11 SDEDGVIDKFPIGMR--VLAVDDDQ-------TCLKILEKFLRECQYEVT 51 (529)
Q Consensus 11 ~~~~~~~~~~p~~mr--VLIVDDd~-------~v~~~L~~~Le~~gy~V~ 51 (529)
+...+.+..++...+ ||++.|+. .....|..+|++.|+++.
T Consensus 143 ggksg~~~~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~ 192 (312)
T PRK03604 143 GGKSGHKRRFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVS 192 (312)
T ss_pred CCCCCcccccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEE
Confidence 344455666666556 89998853 344567777877787655
No 395
>PLN02366 spermidine synthase
Probab=28.99 E-value=1.6e+02 Score=30.78 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=39.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--C---CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLREC--Q---YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~--g---y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
|.-.+|.+||=|+.+.+..++++... + -++. ...++.+.++... ...+|+||+|..-|.
T Consensus 113 ~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~dp~ 177 (308)
T PLN02366 113 SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSSDPV 177 (308)
T ss_pred CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCCCCC
Confidence 44468999999999999999888542 1 1344 3455555554321 235999999986653
No 396
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.97 E-value=2e+02 Score=30.50 Aligned_cols=65 Identities=12% Similarity=-0.012 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDMD-GFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmd-GleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
+++.++++.. -.+|+|.+|+..+..+ -.++++.++. .+++|||+= .-...+.+..++++||+..+
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 4444444321 0259999999887543 4567777764 456666652 23367888999999998865
No 397
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.97 E-value=5.3e+02 Score=27.02 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCC--eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 25 RVLAVDDDQTCLKILEKFLRE----CQY--EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~----~gy--~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
-|||-|.+-...-.+...+++ ..+ .|. .+.+.+++.+.+.. .+|+|.+|-.-|+ +--+.++.++. -
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe-~l~~av~~~~~---~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE-QIEQAITLIAG---R 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhcC---c
Confidence 377777776555445555532 332 233 56899999999864 4899999964443 22223333332 2
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
.+|-.++--+.+.+.+....|++-.
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4677788889999999889998754
No 398
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=28.94 E-value=3.1e+02 Score=26.87 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEecCCCC---CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 54 NRAITALKMLRENRNNFD-LVISDVYMPD---MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 54 ~sa~eALe~L~e~~~~pD-LVIlDi~MPd---mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.+..++.+.+.+.. ++ ++++|+.--+ ..-+++++.+.....+||++=.+-...+.+.++++.|++..++-
T Consensus 30 ~dp~~~a~~~~~~g--~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNAKG--ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHHcC--CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 47777777776542 44 8889986543 23456677776566789988888888889999899998877664
No 399
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=28.83 E-value=3.7e+02 Score=28.87 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=45.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~s-a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVI 100 (529)
+..|.++|.++.....++. ..++++..... ....++.+ .-..+|.||+-..= +.....++...+. .+...+|
T Consensus 23 g~~v~vid~~~~~~~~~~~---~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi~~~~~-~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 23 NNDVTVIDTDEERLRRLQD---RLDVRTVVGNGSSPDVLREA--GAEDADLLIAVTDS-DETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred CCcEEEEECCHHHHHHHHh---hcCEEEEEeCCCCHHHHHHc--CCCcCCEEEEecCC-hHHHHHHHHHHHHhcCCCeEE
Confidence 4667777777665443332 23445443211 12222222 12247777775421 1122333344444 3677788
Q ss_pred EEecCCCHHHHHHH---HhcCCcEeE
Q 009670 101 MLSAYSDTKLVMKG---INHGACDYL 123 (529)
Q Consensus 101 vlTa~~d~e~v~~a---l~~GA~DYL 123 (529)
+.+...+.....+. .+.||+..+
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~G~~~vi 122 (453)
T PRK09496 97 ARVRNPEYAEYDKLFSKEALGIDLLI 122 (453)
T ss_pred EEECCccccchhhhhhhhcCCccEEE
Confidence 77755443222222 457887554
No 400
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=28.81 E-value=4.2e+02 Score=25.83 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=47.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH--HHHHHHhcC---CC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGF--KLLELVGLE---MD 96 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGl--eLL~~Ir~~---~~ 96 (529)
.+|..||-++...+.++.-++..+.. +. ...+..+.+. .....+|+|++|- |-..|+ ++++.+... ..
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~---~~~~~fDlV~~DP--Py~~g~~~~~l~~l~~~~~l~~ 151 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA---QPGTPHNVVFVDP--PFRKGLLEETINLLEDNGWLAD 151 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh---hcCCCceEEEECC--CCCCChHHHHHHHHHHCCCcCC
Confidence 48999999999999999988876653 33 3345544432 2222599999995 423343 355655432 22
Q ss_pred CcEEEEecC
Q 009670 97 LPVVMLSAY 105 (529)
Q Consensus 97 ipVIvlTa~ 105 (529)
-.+|++...
T Consensus 152 ~~iv~ve~~ 160 (199)
T PRK10909 152 EALIYVESE 160 (199)
T ss_pred CcEEEEEec
Confidence 236666543
No 401
>PRK03612 spermidine synthase; Provisional
Probab=28.75 E-value=2.4e+02 Score=31.72 Aligned_cols=58 Identities=31% Similarity=0.354 Sum_probs=37.7
Q ss_pred CCccEEEEEeCCHHHHHHHHH--HHHhC---C---CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 21 PIGMRVLAVDDDQTCLKILEK--FLREC---Q---YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~--~Le~~---g---y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
|..-+|.+||=|+.+.+..++ .+... . -++. ...++.+.+ +...+.+|+||+|..-|.
T Consensus 319 ~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l---~~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 319 PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL---RKLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH---HhCCCCCCEEEEeCCCCC
Confidence 333699999999999999888 44321 1 1343 345555444 333346999999976554
No 402
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=28.73 E-value=4.8e+02 Score=25.39 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|..+++.+. ..+|||+- .... ..+.+..+..+++.++.+.+++..++..++..
T Consensus 292 ~~~~~Ea~~--~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 292 GLVLLEAMA--CGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred ChHHHHHHh--cCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 444455432 35677743 3322 34556777888999999999999999988754
No 403
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=28.59 E-value=2.6e+02 Score=28.98 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=49.4
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEec--CC---CC--CCHHHHHHHHhcCCCCcEEEEecCC-CHHHHHHHHhcCCcEeEe
Q 009670 53 TNRAITALKMLRENRNNFDLVISDV--YM---PD--MDGFKLLELVGLEMDLPVVMLSAYS-DTKLVMKGINHGACDYLL 124 (529)
Q Consensus 53 a~sa~eALe~L~e~~~~pDLVIlDi--~M---Pd--mdGleLL~~Ir~~~~ipVIvlTa~~-d~e~v~~al~~GA~DYL~ 124 (529)
+++.++|.+..++. .+|.+-+-+ .- ++ .=|+++++.++...++|++++-+.+ ..+.+.++++.|++..=+
T Consensus 152 ~t~~eea~~f~~~t--g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 152 LTSTTEAKRFAEET--DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINV 229 (281)
T ss_pred eCCHHHHHHHHHhh--CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEE
Confidence 57888998887653 378776622 11 11 2478889888777789999887433 556788899999987744
No 404
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=28.58 E-value=3.1e+02 Score=27.26 Aligned_cols=81 Identities=23% Similarity=0.171 Sum_probs=50.2
Q ss_pred HHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEec-CC--CCCCHHHHHHHHh----c-CCCCcEEEEecCCCHHHH
Q 009670 42 FLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDV-YM--PDMDGFKLLELVG----L-EMDLPVVMLSAYSDTKLV 111 (529)
Q Consensus 42 ~Le~~gy~--V~~a~sa~eALe~L~e~~~~pDLVIlDi-~M--PdmdGleLL~~Ir----~-~~~ipVIvlTa~~d~e~v 111 (529)
.|+..|+. ++.+.+..+|+...+.. .|.|-.=+ +| -+.||+++++.+. . ..+++ |+..+..+...+
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v 171 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAG---ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-VIAASVRHPRHV 171 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcC---CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHH
Confidence 35555655 44567788887776643 34332211 11 1468999887442 2 24555 666777788889
Q ss_pred HHHHhcCCcEeEeCC
Q 009670 112 MKGINHGACDYLLKP 126 (529)
Q Consensus 112 ~~al~~GA~DYL~KP 126 (529)
.++..+|++.+-+-|
T Consensus 172 ~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 172 LEAALIGADIATMPL 186 (213)
T ss_pred HHHHHcCCCEEEcCH
Confidence 999999998775544
No 405
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.57 E-value=1.9e+02 Score=29.90 Aligned_cols=57 Identities=18% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHh-cCCCCcEEEEe------cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 85 FKLLELVG-LEMDLPVVMLS------AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 85 leLL~~Ir-~~~~ipVIvlT------a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+++++.++ ....+|+|+|| .+.-.....++.+.|+++.|+-.+.+++-......+.+
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~ 145 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEK 145 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHH
No 406
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=28.48 E-value=3.2e+02 Score=26.94 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCeEEEEC--CH---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEec
Q 009670 36 LKILEKFLRECQYEVTVTN--RA---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSA 104 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~~a~--sa---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa 104 (529)
...++..+++.||++..+. +. .+.++.+... .+|-||+-- +..+ -.+.+.++....+|+|++..
T Consensus 21 ~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~--~vdgiI~~~--~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 21 WEGLERAAKELGIEYKYVESKSDADYEPNLEQLADA--GYDLIVGVG--FLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhC--CCCEEEEcC--cchH-HHHHHHHHHCCCCEEEEEec
Confidence 3445666677899877653 22 2344444443 488777631 1112 23444444445789988854
No 407
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=28.46 E-value=3.2e+02 Score=26.63 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhcCCCc-eEEEEecC--CCC-CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 54 NRAITALKMLRENRNNF-DLVISDVY--MPD-MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 54 ~sa~eALe~L~e~~~~p-DLVIlDi~--MPd-mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
.+..+..+.+... .+ .+.++|+. +.+ ..-+++++.+.....+||++=-+-.+.+.+.+++..||+..++--
T Consensus 30 ~~~~~~a~~~~~~--g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 30 DDPVAQAKAWEDQ--GAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred CCHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 4666766666653 24 47777873 212 234777877766677899998888899999999999998876544
No 408
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=28.41 E-value=3.3e+02 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=32.9
Q ss_pred CceEEEEecCCCCC---C----HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC-CcEe
Q 009670 69 NFDLVISDVYMPDM---D----GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG-ACDY 122 (529)
Q Consensus 69 ~pDLVIlDi~MPdm---d----GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~G-A~DY 122 (529)
..|.+++|..-++. + ++++++.+. ..+|+++.-+- +.+.+.++++.+ ++.+
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEE
Confidence 47888998865432 2 344555443 46788866655 677788888777 5544
No 409
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=28.33 E-value=98 Score=30.76 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=34.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHH
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITAL 60 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eAL 60 (529)
.|+|.|||=..-.+..+.+.|++.|+++.+..+.++..
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~ 38 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL 38 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHh
Confidence 37899999999999999999999999999999887743
No 410
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=28.21 E-value=7.4e+02 Score=26.60 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=43.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.|++++=-.- +.=|+-+++.+. ..+|||.-.. .. ..+.+..|..+|+..|-+.++|..++..++.
T Consensus 341 ~Dv~v~pS~~-E~fg~~~lEAma--~G~PvV~s~~-gg---~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 341 RGIFVNPALT-EPFGLTLLEAAA--CGLPIVATDD-GG---PRDIIANCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred CCEEeccccc-CCcccHHHHHHH--hCCCEEEeCC-CC---cHHHhcCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 3666543221 233666777554 3468875543 32 3455677889999999999999999998875
No 411
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=28.20 E-value=3.1e+02 Score=28.67 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=19.9
Q ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 87 LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 87 LL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.++.++....+||++=-...+.+...++++.|+.|++
T Consensus 231 ~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v 267 (357)
T cd03316 231 GLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDII 267 (357)
T ss_pred HHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEE
Confidence 3333443444565544444456666666766666654
No 412
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=28.17 E-value=2.7e+02 Score=29.16 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=50.0
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE--ecCCCCC-----CHHHHHHHHhcC
Q 009670 23 GMRVLAVDDDQTCL-KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS--DVYMPDM-----DGFKLLELVGLE 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v~-~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl--Di~MPdm-----dGleLL~~Ir~~ 94 (529)
..+|+|+|-.|... ..+...|.+.|+.++...+..-+.-+ . .+|.||+ |..+.+. -|--.+..+.+.
T Consensus 146 ~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m-~----~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~ 220 (310)
T PRK08535 146 DIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFM-K----DVDKVVVGADAITANGAVINKIGTSQIALAAHE 220 (310)
T ss_pred eEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEEeHHhHHHHHHHHHH
Confidence 47888888887643 44556677778888866665444333 2 2788887 4445543 344455555556
Q ss_pred CCCcEEEEecCC
Q 009670 95 MDLPVVMLSAYS 106 (529)
Q Consensus 95 ~~ipVIvlTa~~ 106 (529)
.++||++++...
T Consensus 221 ~~vPv~V~a~~~ 232 (310)
T PRK08535 221 ARVPFMVAAETY 232 (310)
T ss_pred hCCCEEEecccc
Confidence 788999887643
No 413
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=28.15 E-value=6.1e+02 Score=25.25 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=57.6
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC---CHHH----HHHHHhcC
Q 009670 25 RVLAVDDDQTCLKILEKFLR---ECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM---DGFK----LLELVGLE 94 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le---~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm---dGle----LL~~Ir~~ 94 (529)
.|.+-.-+|..+..+..+++ +.|+.+...+++.-..+.+. .+|.|.+|+..|.. ..++ .++.++..
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~----~~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR----DLDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh----hCCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 58888999998766666554 56899888888765444443 26788999998852 2222 23333322
Q ss_pred CCCcE-EEEecCCCHHHHHHHHh-cCCcEeEeCCCCH
Q 009670 95 MDLPV-VMLSAYSDTKLVMKGIN-HGACDYLLKPVRM 129 (529)
Q Consensus 95 ~~ipV-IvlTa~~d~e~v~~al~-~GA~DYL~KP~~~ 129 (529)
...-+ ++++...+.+.+.+... ....-++.-|...
T Consensus 151 ~~~~vK~Vv~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 PQTSLKVVVFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred CceEEEEEECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 22222 33445555554444432 2122355666543
No 414
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.07 E-value=5.6e+02 Score=25.46 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecC-CC-CC-CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 54 NRAITALKMLRENRNNFDLVISDVY-MP-DM-DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 54 ~sa~eALe~L~e~~~~pDLVIlDi~-MP-dm-dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.+..+..+.+.+. --.++++|+. +- +. .-+++++.+.....+||++=-+-...+.+.+++..||+..++-
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 3666666666543 1237778885 32 32 4578888776667889998888899999999999999987764
No 415
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=27.97 E-value=3.3e+02 Score=27.48 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCC-CCH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHH-hcCCcEeEe
Q 009670 56 AITALKMLRENRNNFDLVISDVYMPD-MDG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGI-NHGACDYLL 124 (529)
Q Consensus 56 a~eALe~L~e~~~~pDLVIlDi~MPd-mdG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al-~~GA~DYL~ 124 (529)
..+..+.+.+.. --.+++.|+.--+ +.| +++++.++....+|||.--+-.+.+.+.+++ +.|++..+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 455666665432 1248888875433 233 5667777766789999999999999999998 799988654
No 416
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=27.95 E-value=1.2e+02 Score=31.02 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=40.0
Q ss_pred HHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCC
Q 009670 62 MLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVR 128 (529)
Q Consensus 62 ~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~ 128 (529)
++++.. ||++|.=---|..-|-.-.|.+-...++|.|+++...... ..++++..-.+|++-+.+
T Consensus 54 ~~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 54 MLKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 344554 8988876655666787777765456789999999877665 467777666677665443
No 417
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=27.84 E-value=4.1e+02 Score=28.42 Aligned_cols=94 Identities=7% Similarity=0.097 Sum_probs=54.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH--HHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDG--FKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdG--leLL~~Ir~~~~ip 98 (529)
+.+|+-||-++...+..+.-++..+.. +. .+.+..+.+... ...+|+||+|- | -.| -++++.+.....-.
T Consensus 255 ~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~vi~DP--P-r~G~~~~~l~~l~~~~p~~ 328 (374)
T TIGR02085 255 DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ---MSAPELVLVNP--P-RRGIGKELCDYLSQMAPKF 328 (374)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc---CCCCCEEEECC--C-CCCCcHHHHHHHHhcCCCe
Confidence 368999999999999988888776653 33 445665544321 12499999993 3 334 35666553221113
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
||.++ ..-...++.+-.+ .+|-++
T Consensus 329 ivyvs-c~p~TlaRDl~~L--~gy~l~ 352 (374)
T TIGR02085 329 ILYSS-CNAQTMAKDIAEL--SGYQIE 352 (374)
T ss_pred EEEEE-eCHHHHHHHHHHh--cCceEE
Confidence 44444 4333444444444 345444
No 418
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=27.83 E-value=4.9e+02 Score=29.62 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=50.1
Q ss_pred ceEEEEecCCCCC-CHH--HHHHHHhcCCCCcEEEEecCCCHHHHHHHHh-cCCcEeEe------CCCCHHHHHHHHH
Q 009670 70 FDLVISDVYMPDM-DGF--KLLELVGLEMDLPVVMLSAYSDTKLVMKGIN-HGACDYLL------KPVRMEELKNTWQ 137 (529)
Q Consensus 70 pDLVIlDi~MPdm-dGl--eLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~-~GA~DYL~------KP~~~eeL~~~l~ 137 (529)
-.|+++|+..-++ .|+ ++++.+.....+|||.-.+....+...++++ .||+.-+. +-++..+++..++
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 3699999977753 564 5677777778899999999999999999996 55655443 3456666665544
No 419
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.68 E-value=4e+02 Score=27.45 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=32.1
Q ss_pred CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 83 DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 83 dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
..+++++.++....+|||..-+..+.+.+.++++.|..|++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 34577777776668999988888889999999998666654
No 420
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.63 E-value=7e+02 Score=25.76 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=15.6
Q ss_pred cEeEeCCCCHHHHHHHHHHHHH
Q 009670 120 CDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 120 ~DYL~KP~~~eeL~~~l~~vlr 141 (529)
..++.+..+.++|.+.+..++.
T Consensus 319 ~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 319 PELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred hhhcCCCCCHHHHHHHHHHHhc
Confidence 4466677788888887777764
No 421
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=27.53 E-value=5.2e+02 Score=28.26 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=59.4
Q ss_pred CccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEec-CCCCCCHHH---HHHHHhcC
Q 009670 22 IGMRVLAVDD-DQTCLKILEKFLRECQYEVTVTN--RAITALKMLRENRNNFDLVISDV-YMPDMDGFK---LLELVGLE 94 (529)
Q Consensus 22 ~~mrVLIVDD-d~~v~~~L~~~Le~~gy~V~~a~--sa~eALe~L~e~~~~pDLVIlDi-~MPdmdGle---LL~~Ir~~ 94 (529)
+|=+||+.+| -.-.+..+..+|.+.|+++..+. +..+.++.+.. ...++|+++- .-|-+.-.+ +.+..+.
T Consensus 101 ~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~- 177 (396)
T COG0626 101 AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKA- 177 (396)
T ss_pred CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHh-
Confidence 3567888887 45667788888889999988665 44556656643 2489999985 223333222 2333332
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 95 MDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.. .++++=..--.-...+.+.+||+-++
T Consensus 178 ~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 178 YG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred cC-CEEEEECCcccccccChhhcCCCEEE
Confidence 23 44555433333456677888876554
No 422
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=27.52 E-value=1.7e+02 Score=28.26 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=29.4
Q ss_pred CCceEEEEecCCC-----CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009670 68 NNFDLVISDVYMP-----DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 68 ~~pDLVIlDi~MP-----dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~ 113 (529)
..+|+||+|=.+. =.+--++++.++..|.--=|++|+..-++.+.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e 146 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLE 146 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 3699999995332 134456777776555444566888876665544
No 423
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.49 E-value=6.9e+02 Score=25.63 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCceEEEEecCC---CCCC--HHHH--HHHHhcCCCCcEEEEecCC-C-----HHHHHHHHhcCCcEeE
Q 009670 57 ITALKMLRENRNNFDLVISDVYM---PDMD--GFKL--LELVGLEMDLPVVMLSAYS-D-----TKLVMKGINHGACDYL 123 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~M---Pdmd--GleL--L~~Ir~~~~ipVIvlTa~~-d-----~e~v~~al~~GA~DYL 123 (529)
..|.+.+... ...+++||.... +.-. -+++ +..++...++||++=+++. . ......|+.+||++.+
T Consensus 151 ~~A~e~i~~~-Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~ 229 (266)
T PRK13398 151 LYAAEYIMSE-GNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLM 229 (266)
T ss_pred HHHHHHHHhc-CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEE
Confidence 3344455432 247888887632 3222 2222 3345555678988845443 3 4567778899998654
Q ss_pred e
Q 009670 124 L 124 (529)
Q Consensus 124 ~ 124 (529)
+
T Consensus 230 i 230 (266)
T PRK13398 230 I 230 (266)
T ss_pred E
Confidence 3
No 424
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=27.43 E-value=1.4e+02 Score=27.67 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCeEE---EEC-CHHHHHHHHHhcCC--CceEEEEe
Q 009670 35 CLKILEKFLRECQYEVT---VTN-RAITALKMLRENRN--NFDLVISD 76 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~---~a~-sa~eALe~L~e~~~--~pDLVIlD 76 (529)
....++.+|++.|+++. .+. +.++..+.+++... .+|+||+-
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 45578888888888755 233 34333334443222 47888873
No 425
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=27.39 E-value=4.6e+02 Score=28.17 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=42.9
Q ss_pred ceEEEEecCCCCCCHHH-HHHHHhcCCCCcEEEEe-cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFK-LLELVGLEMDLPVVMLS-AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 70 pDLVIlDi~MPdmdGle-LL~~Ir~~~~ipVIvlT-a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
.+.+|++..-...=-+| ++..+ .....+|... ...+.....+.++.|+++.+++|-++.++++....+-
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 46677765433222233 22333 2334444443 3345556777889999999999999999988777653
No 426
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=27.32 E-value=7.3e+02 Score=27.05 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=35.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEE-------------------CCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY-EVTVT-------------------NRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy-~V~~a-------------------~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
.||||||..--.-+.+...+.+...+ .+..+ .+.++.++++++. .+|+|+....-|-
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~--~iD~Vv~g~E~~l 80 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSN--PFDLIVVGPEDPL 80 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHc--CCCEEEECCchHH
Confidence 48999999988877777776554212 22211 3445555666655 4999998654433
No 427
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.32 E-value=4.1e+02 Score=26.22 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=31.4
Q ss_pred EecCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHH
Q 009670 75 SDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNT 135 (529)
Q Consensus 75 lDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~ 135 (529)
+.+.|-.-+.++.++.++ ..++ -+|=.-.-.+.+.+.+++++||. |++-|.-..++.+.
T Consensus 33 iEit~~tp~a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~~ 92 (201)
T PRK06015 33 IEITLRTPAALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLAA 92 (201)
T ss_pred EEEeCCCccHHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 334444445666666554 2332 12222334567788888999985 55556444444443
No 428
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.29 E-value=6.2e+02 Score=26.26 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=56.0
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE-E-----C---CHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcC
Q 009670 29 VDDDQTCLKILEKFLRECQYEVTV-T-----N---RAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGLE 94 (529)
Q Consensus 29 VDDd~~v~~~L~~~Le~~gy~V~~-a-----~---sa~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~Ir~~ 94 (529)
..+...+.++++.+-+..++.|.+ . . +..+..+.+++. ..|.|.+.-..+ +.--++.++.++..
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 334455555565554445544432 1 1 123444444443 367776643222 11236667777766
Q ss_pred CCCcEEEEecCCCHHHHHHHH-hcCCcEeEe
Q 009670 95 MDLPVVMLSAYSDTKLVMKGI-NHGACDYLL 124 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al-~~GA~DYL~ 124 (529)
.++|||...+-.+.+.+.+++ ..||+....
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 779999999999999999999 567877654
No 429
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.27 E-value=5.5e+02 Score=24.44 Aligned_cols=85 Identities=14% Similarity=0.015 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCeEEEE-CCH----HHHHHHHHhcCCCceEEEEecCCC----CCCHHHHHHHHhcCCCCcEEEEecCCC
Q 009670 37 KILEKFLRECQYEVTVT-NRA----ITALKMLRENRNNFDLVISDVYMP----DMDGFKLLELVGLEMDLPVVMLSAYSD 107 (529)
Q Consensus 37 ~~L~~~Le~~gy~V~~a-~sa----~eALe~L~e~~~~pDLVIlDi~MP----dmdGleLL~~Ir~~~~ipVIvlTa~~d 107 (529)
..+.+..++.|..+... .+. +++..+.+ . .+|+|-+.-... +..+++.++.++.....+.|++++--+
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~-~--g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~ 168 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE-L--GADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGIN 168 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH-c--CCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcC
Confidence 34444556677776533 232 44444433 2 488886642111 112455555444322234566567778
Q ss_pred HHHHHHHHhcCCcEeEe
Q 009670 108 TKLVMKGINHGACDYLL 124 (529)
Q Consensus 108 ~e~v~~al~~GA~DYL~ 124 (529)
.+.+.+++++||+.+..
T Consensus 169 ~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 169 LDTIPDVIKLGPDIVIV 185 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88899999999998765
No 430
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=27.26 E-value=2.9e+02 Score=29.38 Aligned_cols=77 Identities=10% Similarity=0.138 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009670 34 TCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 34 ~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~ 113 (529)
.....|.++-++.|..+.+.--..++++.+.+. ++-++=+-=.++.-+.|++.+.. ...|||+=|+....+.+..
T Consensus 76 e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~----~v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGmatl~Ei~~ 150 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLSTPFDLESADFLEDL----GVPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGMATLEEIEA 150 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc----CCCEEEECcccccCHHHHHHHHh-cCCcEEEECCCCCHHHHHH
Confidence 344556666667788877666666777887653 33355555567778999998864 4679999999988887776
Q ss_pred HH
Q 009670 114 GI 115 (529)
Q Consensus 114 al 115 (529)
|+
T Consensus 151 Av 152 (329)
T TIGR03569 151 AV 152 (329)
T ss_pred HH
Confidence 65
No 431
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=27.23 E-value=2.5e+02 Score=27.87 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=50.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC-CCH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPD-MDG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPd-mdG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+..+.++.+.+.. --.++++|+.--+ +.| +++++.++...++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 148 ~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 5677777766643 2469999997664 344 4566766555589999999999999999999999988775
No 432
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.17 E-value=6.5e+02 Score=26.18 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=57.9
Q ss_pred cEEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHH-----H--HHhcCCCceEEEEecCCCCCCHH--HHHH
Q 009670 24 MRVLAV--DDDQT---CLKILEKFLRECQYEVTVTNRAITALK-----M--LRENRNNFDLVISDVYMPDMDGF--KLLE 89 (529)
Q Consensus 24 mrVLIV--DDd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe-----~--L~e~~~~pDLVIlDi~MPdmdGl--eLL~ 89 (529)
.+|.|| .+.+. ..+.+..+|++.++++.......+.+. . .......+|+||+ -+.||- ..++
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt~l~~~~ 80 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGSLLGAAR 80 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHHHHHHHH
Confidence 358887 33333 344556667777888776543222111 0 0111124777766 367774 2223
Q ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 90 LVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 90 ~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
.+ ...++||+-+-. |=.+||. .++.+++..++..+++.
T Consensus 81 ~~-~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 81 AL-ARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred Hh-cCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcC
Confidence 33 245788886543 4556774 68899999999998764
No 433
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=26.86 E-value=3e+02 Score=24.24 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLREN-RNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~-~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
+||.|+-| +..... ++-.|.++..+.+.+++.+.+++. ++++.+|++.-.+-+.-. +.++..+ ....|+|+.
T Consensus 4 ~kIaVIGD-~dtv~G----FrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~~i~-~~i~~~~-~~~~P~Il~ 76 (104)
T PRK01395 4 YKIGVVGD-KDSILP----FKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAADIP-ETIERYD-NQVLPAIIL 76 (104)
T ss_pred eeEEEEEC-HHHHHH----HHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHHHhH-HHHHHhc-CCCCCEEEE
Confidence 68888888 443332 334578888887777777766653 336888888644332111 1222222 345676555
Q ss_pred e
Q 009670 103 S 103 (529)
Q Consensus 103 T 103 (529)
-
T Consensus 77 I 77 (104)
T PRK01395 77 I 77 (104)
T ss_pred e
Confidence 3
No 434
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.75 E-value=3.8e+02 Score=27.48 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=0.0
Q ss_pred EEEEeCC-------HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCC--C
Q 009670 26 VLAVDDD-------QTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM--D 96 (529)
Q Consensus 26 VLIVDDd-------~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~--~ 96 (529)
|||.|++ ......+++.+...-.-.+.+.+.+++.+.++.. +|.|.+|-. +.+.++...... +
T Consensus 155 vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~g---aDyI~ld~~-----~~e~l~~~~~~~~~~ 226 (268)
T cd01572 155 VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEAG---ADIIMLDNM-----SPEELREAVALLKGR 226 (268)
T ss_pred eeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcC---CCEEEECCc-----CHHHHHHHHHHcCCC
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
+| |+.++--+.+.+.+..+.||+.+
T Consensus 227 ip-i~AiGGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 227 VL-LEASGGITLENIRAYAETGVDYI 251 (268)
T ss_pred Cc-EEEECCCCHHHHHHHHHcCCCEE
No 435
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.68 E-value=4.8e+02 Score=28.51 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=46.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-H----HHHHHHHhc------------CCCceEEEEecCCCCCCH--
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA-I----TALKMLREN------------RNNFDLVISDVYMPDMDG-- 84 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa-~----eALe~L~e~------------~~~pDLVIlDi~MPdmdG-- 84 (529)
.+|+|+.--..=+. +..+|.+.|++|+.+... . ...+.+++. ...+|+||.-...+...-
T Consensus 17 ~~v~viG~G~~G~~-~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 17 LRVVVAGLGVSGFA-AADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred CEEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHH
Confidence 46777766655444 345555667776654311 1 112223221 113788888776653322
Q ss_pred -------------HHHHHHH-hcCCCCcEEEEecCCCHHHHHHH
Q 009670 85 -------------FKLLELV-GLEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 85 -------------leLL~~I-r~~~~ipVIvlTa~~d~e~v~~a 114 (529)
.+++-.+ .....+++|.+|+..........
T Consensus 96 ~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~m 139 (480)
T PRK01438 96 AAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQM 139 (480)
T ss_pred HHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHH
Confidence 2222111 11125689999999877665443
No 436
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=26.54 E-value=2.3e+02 Score=26.16 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=38.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
.+.+|.++.+.. ....+...... +.+++.+.+..+++++|...+ +|.++.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g~--~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSGR--IDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcCC--eeeeeccc
Confidence 457899888865 33344444433 678888999999999998765 99999985
No 437
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=26.34 E-value=4.6e+02 Score=26.87 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH-Hhc-CC
Q 009670 25 RVLAVDDDQTCLKILEKFLR----ECQ--YEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL-VGL-EM 95 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le----~~g--y~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~-Ir~-~~ 95 (529)
.|||.|++-.+.-.+...++ ..+ ..+ +.+.+.+++++.++. .+|.|.+|-.-| +-++. ++. ..
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 47888887555433333332 233 223 477899999998754 489999987544 22332 221 12
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+|++ .++--+.+.+.+..+.||+.+-+
T Consensus 222 ~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 36655 45556788888999999987644
No 438
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.31 E-value=5.6e+02 Score=28.68 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=62.3
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC----------C-CCC
Q 009670 22 IGMRVLAVDDD----QTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYM----------P-DMD 83 (529)
Q Consensus 22 ~~mrVLIVDDd----~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~M----------P-dmd 83 (529)
.+.++++||-. ..+.+.++.+=+.+ +..|. -+.+.++|..++.. ..|.|-+.+.- . +..
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a---Gad~v~vgig~gsictt~~~~~~~~p 314 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA---GADIVKVGVGPGAMCTTRMMTGVGRP 314 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc---CCCEEEECccCCcccccccccCCchh
Confidence 36788888833 33333333333333 33433 35678888888764 47888643322 1 112
Q ss_pred HHHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 84 GFKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 84 GleLL~~Ir---~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
-+.++..+. ...++|||.=-+......+.+++.+||+...+-
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 233443332 245799999999999999999999999987653
No 439
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.17 E-value=7.1e+02 Score=25.37 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=59.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE-E--CCHHHHHHHHHhcCCCceEEEE-ec-CCCC------CCHHHHHHHHhcC
Q 009670 26 VLAVDDDQTCLKILEKFLRECQYEVTV-T--NRAITALKMLRENRNNFDLVIS-DV-YMPD------MDGFKLLELVGLE 94 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~Le~~gy~V~~-a--~sa~eALe~L~e~~~~pDLVIl-Di-~MPd------mdGleLL~~Ir~~ 94 (529)
|+|.|=...-...+...+++.|...+. + ++..+=++.+.+.. .+.|-+ .. .--+ .+..++++.++..
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 445555555555566666777877442 3 23234444444443 333321 11 1011 2345578888877
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
.++||++=.+-.+.+.+.++... |+..++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 78999998888899999998876 99988754
No 440
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=26.15 E-value=3.7e+02 Score=28.45 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=38.3
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 009670 24 MRVLAVDDDQTCL----KILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (529)
Q Consensus 24 mrVLIVDDd~~v~----~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~ 90 (529)
-|||||-|..... ..+...|++.++++..+. +..++++.+++. .+|+||- +-+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE--GCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 4889998765433 457777777666655432 234556666554 4888764 355566666664
Q ss_pred H
Q 009670 91 V 91 (529)
Q Consensus 91 I 91 (529)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 4
No 441
>PRK08999 hypothetical protein; Provisional
Probab=26.11 E-value=2.8e+02 Score=28.46 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=49.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.+.+.+++.++.+. .+|.|++--..+- .-|++.++.+....++||+.+-+- +.+.+.+++++||+++-
T Consensus 232 S~h~~~~~~~a~~~---~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g~~gva 306 (312)
T PRK08999 232 SCHDAEELARAQRL---GVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAREHGAQGIA 306 (312)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHhCCCEEE
Confidence 56777777665442 4898887654431 237888887766678999999877 67788889999998763
No 442
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=26.00 E-value=1.1e+02 Score=31.16 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=40.1
Q ss_pred ccEEEEEeCCHHHHH-HHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec--CCCCC-----CHHHHHHHHhcC
Q 009670 23 GMRVLAVDDDQTCLK-ILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV--YMPDM-----DGFKLLELVGLE 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~-~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi--~MPdm-----dGleLL~~Ir~~ 94 (529)
.++|+|+|..|...- .+...|.+.|+.|+...+..-+. .+.. .+|.||+.. .+++. -|-..+..+.+.
T Consensus 133 ~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~-~m~~---~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~ 208 (282)
T PF01008_consen 133 KFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGY-VMPR---DVDKVLIGADAVLANGGVVNKVGTLQLALAAKE 208 (282)
T ss_dssp EEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHH-HHHC---TESEEEEE-SEEETTS-EEEETTHHHHHHHHHH
T ss_pred eEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHH-HHHH---hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHh
Confidence 467888877764332 34445556688877666544332 2322 278888744 44432 344444444445
Q ss_pred CCCcEEEEecC
Q 009670 95 MDLPVVMLSAY 105 (529)
Q Consensus 95 ~~ipVIvlTa~ 105 (529)
.++||++++..
T Consensus 209 ~~vPv~v~~~~ 219 (282)
T PF01008_consen 209 FNVPVYVLAES 219 (282)
T ss_dssp TT-EEEEE--G
T ss_pred hCCCEEEEccc
Confidence 67898888754
No 443
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.00 E-value=3.3e+02 Score=28.66 Aligned_cols=77 Identities=12% Similarity=0.168 Sum_probs=46.8
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 009670 23 GMRVLAVDDDQTC---LKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (529)
Q Consensus 23 ~mrVLIVDDd~~v---~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~ 90 (529)
+-|+|||-|.... .+.+...|++.+.++..+. +..++.+..++. ++|+||- +-+..-+++.+.
T Consensus 22 ~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~iia---vGGGs~~D~aK~ 96 (345)
T cd08171 22 GKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQ--EADMIFA---VGGGKAIDTVKV 96 (345)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhc--CCCEEEE---eCCcHHHHHHHH
Confidence 3689999886543 3445566666666544221 224444444443 4888874 457777888877
Q ss_pred HhcCCCCcEEEEec
Q 009670 91 VGLEMDLPVVMLSA 104 (529)
Q Consensus 91 Ir~~~~ipVIvlTa 104 (529)
+.....+|+|.+-.
T Consensus 97 ia~~~~~p~i~VPT 110 (345)
T cd08171 97 LADKLGKPVFTFPT 110 (345)
T ss_pred HHHHcCCCEEEecC
Confidence 65445678777743
No 444
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=25.91 E-value=4.2e+02 Score=28.01 Aligned_cols=97 Identities=16% Similarity=0.037 Sum_probs=56.9
Q ss_pred EEEEeCCHHHHHHHHHHH-------HhCCC--eE-EEECCHHHHHHHHHh---cCCCceEEEEecC--CCC---CCHHHH
Q 009670 26 VLAVDDDQTCLKILEKFL-------RECQY--EV-TVTNRAITALKMLRE---NRNNFDLVISDVY--MPD---MDGFKL 87 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~L-------e~~gy--~V-~~a~sa~eALe~L~e---~~~~pDLVIlDi~--MPd---mdGleL 87 (529)
|||-|.+-...-.+...+ +..++ .| +.+.+.+++.+.++- .+..+|+|++|-. -|+ .+--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 666666654443333333 22223 23 367889999998861 1124899999965 222 122223
Q ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 88 LELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 88 L~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
.+.+........|-.++--+.+.+.+....|++-.
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 33333222223477888889999999889998654
No 445
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=25.69 E-value=4e+02 Score=27.85 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
-+++++.++...++|||..-...+.+...++++.|..|++.
T Consensus 278 ~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 278 QVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred cHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 35677777766789999888888999999999999888754
No 446
>PRK13695 putative NTPase; Provisional
Probab=25.66 E-value=4.6e+02 Score=24.24 Aligned_cols=71 Identities=21% Similarity=0.158 Sum_probs=40.5
Q ss_pred CceEEEEec--CCCCCCH--HHHHHHHhcCCCCcEEEEecCCCHHH-HHHHH-hcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 69 NFDLVISDV--YMPDMDG--FKLLELVGLEMDLPVVMLSAYSDTKL-VMKGI-NHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 69 ~pDLVIlDi--~MPdmdG--leLL~~Ir~~~~ipVIvlTa~~d~e~-v~~al-~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
.+|++|+|- .+...+. .+.++.+- ....|+|+++....... ..+.. ..+..=|-..|-+.++|...+...+
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 699999996 3333221 22333222 34568888776544333 33333 3445556667888888887666543
No 447
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=25.58 E-value=4.3e+02 Score=26.02 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=44.5
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEec-CC--CCCCHHHHHHHHh---cCCCCc-EEEEecCCCHHHHHHHHhcCCcEe
Q 009670 50 VTVTNRAITALKMLRENRNNFDLVISDV-YM--PDMDGFKLLELVG---LEMDLP-VVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 50 V~~a~sa~eALe~L~e~~~~pDLVIlDi-~M--PdmdGleLL~~Ir---~~~~ip-VIvlTa~~d~e~v~~al~~GA~DY 122 (529)
++.+.+..+|+...+.. .+.|=-=+ +| -+.||+++++.+. ...+.+ -|+..+..+...+.++..+||+-+
T Consensus 106 ~T~V~s~~Qa~~Aa~AG---A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~v 182 (211)
T cd00956 106 VTAIFSAAQALLAAKAG---ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAI 182 (211)
T ss_pred eEEecCHHHHHHHHHcC---CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEE
Confidence 33556667776666543 33321111 11 2578999887542 122333 455667778888999999999887
Q ss_pred EeCC
Q 009670 123 LLKP 126 (529)
Q Consensus 123 L~KP 126 (529)
-+-|
T Consensus 183 Tv~~ 186 (211)
T cd00956 183 TLPP 186 (211)
T ss_pred EeCH
Confidence 6644
No 448
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=25.46 E-value=5.5e+02 Score=26.88 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=58.6
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE------EC---CHHHHHHHHHhcCCCceEEEEecCC-C----CCCHHHHHHHHhc
Q 009670 28 AVDDDQTCLKILEKFLRECQYEVTV------TN---RAITALKMLRENRNNFDLVISDVYM-P----DMDGFKLLELVGL 93 (529)
Q Consensus 28 IVDDd~~v~~~L~~~Le~~gy~V~~------a~---sa~eALe~L~e~~~~pDLVIlDi~M-P----dmdGleLL~~Ir~ 93 (529)
+..|...+.++++.+-+..++.|.. .. +..+..+.+.+. ..|.|.+.-.- + +...+++++.++.
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHHH
Confidence 4455556666666665544444332 12 233333444433 36766554322 2 2233778888877
Q ss_pred CCCCcEEEEecCCCHHHHHHHHh-cCCcEeEe
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGIN-HGACDYLL 124 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~-~GA~DYL~ 124 (529)
..++|||..-+-.+.+.+.++++ .||+...+
T Consensus 192 ~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 192 KVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 77899999988889999999996 58888754
No 449
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=25.44 E-value=9.3 Score=37.37 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=69.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe----EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE----VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-- 93 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~----V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-- 93 (529)
++.... +.+||+......+..++....+. ........+ ....... ..+|+++.++.||++.+++++.....
T Consensus 13 ~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (340)
T KOG1601|consen 13 FDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPE-SFVAATS-FSIDLSVPSLDMPGLEGFSLFVSENNPN 89 (340)
T ss_pred cccccc-cccccccCCcccccccccccccccccccccccchhh-hhhcccc-ccccccccccccccccccccccccccCC
Confidence 333344 77777777776766665543211 111122211 0010000 24899999999999999998876542
Q ss_pred -CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 94 -EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 94 -~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
..+++++++............+..++.+|+.||....++...+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 136 (340)
T KOG1601|consen 90 SLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHV 136 (340)
T ss_pred CCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCCccc
Confidence 3445566666555555566777778999999998744444444433
No 450
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.41 E-value=5.1e+02 Score=27.13 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE--EE---CCHHHHHHHHHhcCCCceEEEE
Q 009670 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQYEVT--VT---NRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 18 ~~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~--~a---~sa~eALe~L~e~~~~pDLVIl 75 (529)
..|...=|||=+|.|+..+..--..-++.+..+. .+ .-+....++|.+.+ ||++++
T Consensus 100 ~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 160 (287)
T PF05582_consen 100 EYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYR--PDILVI 160 (287)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcC--CCEEEE
Confidence 3455556999999999988877777777777654 22 34455666777765 998887
No 451
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.40 E-value=6.4e+02 Score=26.64 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHhcCC--CCcEEEEecCCCHHHHHHHHhcCCcEe------EeC-CCCHHHHHHHHHHHHH
Q 009670 87 LLELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDY------LLK-PVRMEELKNTWQHVIR 141 (529)
Q Consensus 87 LL~~Ir~~~--~ipVIvlTa~~d~e~v~~al~~GA~DY------L~K-P~~~eeL~~~l~~vlr 141 (529)
.++.++... ++|||...+-.+.+.+.+.+.+||+.. +.+ |.-..++.+-+...++
T Consensus 278 ~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 445554433 799999999999999999999998754 344 5555555555555544
No 452
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=25.21 E-value=4.3e+02 Score=27.03 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=44.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC----C------C---HHHHHHHHh-cCCCCcEEEEecCCCHHH----HHHHHh
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPD----M------D---GFKLLELVG-LEMDLPVVMLSAYSDTKL----VMKGIN 116 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPd----m------d---GleLL~~Ir-~~~~ipVIvlTa~~d~e~----v~~al~ 116 (529)
-..+|+++|.+.. ||.+++++.||- | + -+.+++..| ..++ ||++=.++..-+. ...+..
T Consensus 167 ~e~kaIdiL~~~~--~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~ 243 (275)
T COG1856 167 GEFKAIDILVNYE--PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVL 243 (275)
T ss_pred chHHHHHHHhcCC--CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHH
Confidence 4578999998764 999999999983 1 1 233444333 4556 8887776655443 344566
Q ss_pred cCCcEeEeCCC
Q 009670 117 HGACDYLLKPV 127 (529)
Q Consensus 117 ~GA~DYL~KP~ 127 (529)
+|++ -+.+|.
T Consensus 244 ~gVd-~It~P~ 253 (275)
T COG1856 244 AGVD-RITFPP 253 (275)
T ss_pred cCCc-eeecCC
Confidence 6664 456664
No 453
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=25.13 E-value=6e+02 Score=24.14 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=47.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--cCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir--~~~~ip 98 (529)
..+|..||-++.....++..+++.++. +. ...+..+. .. ...+|+|+++. +.+. -++++.+. ..++-.
T Consensus 66 ~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~---~~--~~~fD~I~s~~-~~~~--~~~~~~~~~~LkpgG~ 137 (181)
T TIGR00138 66 ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF---QH--EEQFDVITSRA-LASL--NVLLELTLNLLKVGGY 137 (181)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc---cc--cCCccEEEehh-hhCH--HHHHHHHHHhcCCCCE
Confidence 468999999999988888888776653 44 33454442 11 23599999986 3322 22333332 224444
Q ss_pred EEEEecCCCHHHHHHH
Q 009670 99 VVMLSAYSDTKLVMKG 114 (529)
Q Consensus 99 VIvlTa~~d~e~v~~a 114 (529)
+++.-+......+..+
T Consensus 138 lvi~~~~~~~~~~~~~ 153 (181)
T TIGR00138 138 FLAYKGKKYLDEIEEA 153 (181)
T ss_pred EEEEcCCCcHHHHHHH
Confidence 5555444444433333
No 454
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=25.06 E-value=4.1e+02 Score=23.04 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=40.6
Q ss_pred CccE-EEEEeCCHHHHHHHHHHHHhCCCeEEEE-CC----HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 009670 22 IGMR-VLAVDDDQTCLKILEKFLRECQYEVTVT-NR----AITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 22 ~~mr-VLIVDDd~~v~~~L~~~Le~~gy~V~~a-~s----a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~ 89 (529)
.|+. +.+++++....+.+++++.+.+|-+... .+ ..+.++.+.+....|-+|.+ |+.+|-+.++
T Consensus 18 aGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~I----P~~~~~~~i~ 87 (100)
T PRK02228 18 AGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTL----GGGGGSGGLR 87 (100)
T ss_pred cCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEE----CCCccchHHH
Confidence 4675 5557887889999999988777876644 33 34455543333335767666 7766644443
No 455
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.06 E-value=6.6e+02 Score=24.60 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=46.5
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCC---CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 55 RAITALKMLRENRNNFD-LVISDVYMP---DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pD-LVIlDi~MP---dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+..+..+.+... .++ +++.|+... ..-.+++++.+....++|||+..+-.+.+.+.++++.||+..++
T Consensus 150 ~~~~~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 150 TPVEAAKRFEEL--GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 445555555433 355 566676322 12346778877666679999999999889999988999998754
No 456
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=24.99 E-value=6.3e+02 Score=25.51 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 85 FKLLELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 85 leLL~~Ir~~~--~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
++.++.++... ++|||...+-.+.+.+.+++.+||+...
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 45566665443 7999999999999999999999987653
No 457
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=24.93 E-value=5e+02 Score=27.96 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC----CHHHHHHHHh-cCCCCcEEEEecCCCHH
Q 009670 35 CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDM----DGFKLLELVG-LEMDLPVVMLSAYSDTK 109 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm----dGleLL~~Ir-~~~~ipVIvlTa~~d~e 109 (529)
--+.+...|...||+.+.. .+++|||++...-.-. ..++.++.++ ..++++|| +++..-..
T Consensus 12 ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vv-vgGc~a~~ 77 (414)
T TIGR01579 12 ESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKII-VTGCYAQS 77 (414)
T ss_pred HHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEE-EECCcccc
Confidence 3456777777778876521 1248999998654432 3677777665 34555544 55543333
Q ss_pred HHHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 110 LVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 110 ~v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
.-.++.++...|++.-+-....+...+...
T Consensus 78 ~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 78 NPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred CHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 334445666778888887777777766644
No 458
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=24.89 E-value=1.7e+02 Score=29.10 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.6
Q ss_pred ccEEEEEeCCHHH
Q 009670 23 GMRVLAVDDDQTC 35 (529)
Q Consensus 23 ~mrVLIVDDd~~v 35 (529)
|.+|+|||-|+.-
T Consensus 30 G~~VlliD~DpQ~ 42 (231)
T PRK13849 30 GKRVALFEADENR 42 (231)
T ss_pred CCcEEEEeCCCCC
Confidence 6799999988753
No 459
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=24.83 E-value=4.4e+02 Score=28.27 Aligned_cols=87 Identities=11% Similarity=0.201 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHH
Q 009670 33 QTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVM 112 (529)
Q Consensus 33 ~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~ 112 (529)
......|.++-++.|.-+...--...+.+.|... ++-..-+--.+.+-+.+++.+.... .|+|+-|+..+.+.+.
T Consensus 89 ~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~----~~~ayKIaS~E~~~~plik~iA~~~-kPiIlSTGma~~~ei~ 163 (347)
T COG2089 89 LEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESL----NPPAYKIASGEINDLPLIKYIAKKG-KPIILSTGMATIEEIE 163 (347)
T ss_pred HHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhc----CCCeEEecCccccChHHHHHHHhcC-CCEEEEcccccHHHHH
Confidence 3444556666666676666555556677777653 2233444445667788898775433 3999999999888777
Q ss_pred HHH----hcCCcEeEe
Q 009670 113 KGI----NHGACDYLL 124 (529)
Q Consensus 113 ~al----~~GA~DYL~ 124 (529)
+++ +.|.-|+++
T Consensus 164 ~av~~~r~~g~~~i~L 179 (347)
T COG2089 164 EAVAILRENGNPDIAL 179 (347)
T ss_pred HHHHHHHhcCCCCeEE
Confidence 765 578776543
No 460
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.83 E-value=6.9e+02 Score=24.79 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=63.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEecCC-CCCCHHHHHHHHhcCCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYM-PDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~M-PdmdGleLL~~Ir~~~~i 97 (529)
.++++|+.+.+. ...+++.+++.+. .|.... ...+..+++.. .|++++-... .+.-|+.+++.+. ..+
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~--~g~ 290 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMA--FGK 290 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHH--cCC
Confidence 467777776543 3345555544332 344332 33444555542 5676653221 2344667777654 357
Q ss_pred cEEEEecCCCHHHHHHHHh-cCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 98 PVVMLSAYSDTKLVMKGIN-HGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~-~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|||.--..... +.+. .|.++++..+-+.+++.+++..++..
T Consensus 291 Pvi~~~~~~~~----~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 291 PVISTEIGTGG----SYVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred CEEecCCCCch----hHHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 88853222222 2233 47889999999999999999999764
No 461
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.73 E-value=4.2e+02 Score=25.50 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009670 34 TCLKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 34 ~v~~~L~~~Le~~gy~V~~a~s---a---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~ 105 (529)
.+...++..+++.||++..... . .++++.+... .+|.||+....++ . ..++.+. ..++|||++-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~~~~--~-~~~~~~~-~~~ipvV~i~~~ 87 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSAR--RTDGVILVTPELT--S-AQRAALR-RTGIPFVVVDPA 87 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHc--CCCEEEEecCCCC--h-HHHHHHh-cCCCCEEEEecc
Confidence 3445566667778999775432 2 2445555554 4897776544433 2 3345443 357899988543
No 462
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=24.69 E-value=3.5e+02 Score=28.60 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=39.9
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 24 MRVLAVDDDQT-CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 24 mrVLIVDDd~~-v~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
-|+|||-|... ....+...|++.++++..+. +..++.+.+++. .+|+||- .-+..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREF--GPDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCCcHHHHHHHHH
Confidence 47899977655 35567778887776655432 245666666665 4898763 3565666666543
No 463
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=24.68 E-value=4.6e+02 Score=26.59 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=55.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH-HHHHH-hcCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK-LLELV-GLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGle-LL~~I-r~~~~ipVIv 101 (529)
-.|||-..-.-+-..+.+.+.+.|-+|.+|..-++.|+........+--++||+ .|.++.+ +++++ +.+|.+-|++
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv--~d~~~~~~lvewLkk~~P~lNvli 83 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDV--ADRDSRRELVEWLKKEYPNLNVLI 83 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecc--cchhhHHHHHHHHHhhCCchheee
Confidence 457888777777777777777778899999888888887766542344567776 5666665 66777 4678887776
Q ss_pred Ee
Q 009670 102 LS 103 (529)
Q Consensus 102 lT 103 (529)
=-
T Consensus 84 NN 85 (245)
T COG3967 84 NN 85 (245)
T ss_pred ec
Confidence 43
No 464
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=24.61 E-value=7.1e+02 Score=24.83 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=56.8
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE--E----CCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhcCCCCcEEE
Q 009670 29 VDDDQTCLKILEKFLRECQYEVTV--T----NRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 29 VDDd~~v~~~L~~~Le~~gy~V~~--a----~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLL~~Ir~~~~ipVIv 101 (529)
..|...+.++++.+ ++.++.|.. - .+..+..+.+.+. ..|.+-.+...++ .--++.++.++ .++|||.
T Consensus 122 l~~p~~l~eiv~av-r~~~~pVsvKir~g~~~~~~~la~~l~~a--G~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIg 196 (233)
T cd02911 122 LKDPERLSEFIKAL-KETGVPVSVKIRAGVDVDDEELARLIEKA--GADIIHVDAMDPGNHADLKKIRDIS--TELFIIG 196 (233)
T ss_pred cCCHHHHHHHHHHH-HhcCCCEEEEEcCCcCcCHHHHHHHHHHh--CCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEE
Confidence 33444555555544 344544431 1 2445555555543 4787766665554 22356666655 5789999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEe
Q 009670 102 LSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.-+-.+.+.+.+.+..||+...+
T Consensus 197 nGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 197 NNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred ECCcCCHHHHHHHHHcCCCEEEE
Confidence 88889999999999999887654
No 465
>PRK10867 signal recognition particle protein; Provisional
Probab=24.46 E-value=5.4e+02 Score=28.42 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=30.7
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CHHH----HHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCL---KILEKFLRECQYEVTVTN---RAIT----ALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~---~~L~~~Le~~gy~V~~a~---sa~e----ALe~L~e~~~~pDLVIlDi 77 (529)
+.+|++|+-|..-. +.++.+.+..+..+.... ++.+ +++..+. ..+|+||+|.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDT 191 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDT 191 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeC
Confidence 57899998874332 334444555676665432 3333 3333332 2599999998
No 466
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=24.36 E-value=7.7e+02 Score=26.71 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=38.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC------CcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG------ACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~G------A~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
.|++++--.- +.-|+-+++.+. ..+|+|+- .... ..+.+..| .++++..|.+.++|..++..++..
T Consensus 366 aDv~l~pS~~-E~~gl~~lEAma--~G~pvI~s-~~gg---~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 366 ADFILMPSRF-EPCGLTQLYAMR--YGTVPIVR-RTGG---LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRL 437 (473)
T ss_pred CCEEEeCCCc-CCcHHHHHHHHH--CCCCeEEc-cCCC---ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 4565553221 223555555332 34566643 3222 22233444 789999999999999999988764
No 467
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=24.34 E-value=4.4e+02 Score=28.02 Aligned_cols=75 Identities=24% Similarity=0.238 Sum_probs=53.4
Q ss_pred hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC-CCCCCH--------HHHHHHHhcCCC-CcEEEEecCCCHHHHHH
Q 009670 45 ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY-MPDMDG--------FKLLELVGLEMD-LPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 45 ~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~-MPdmdG--------leLL~~Ir~~~~-ipVIvlTa~~d~e~v~~ 113 (529)
..|..|. .+.+..+|..+.+. ..|.||..=. =-+..| +.|+..+....+ +|||.--+-.+...+..
T Consensus 125 ~~g~~v~~~v~~~~~A~~~~~~---G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~A 201 (336)
T COG2070 125 AAGIKVIHSVITVREALKAERA---GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAA 201 (336)
T ss_pred HcCCeEEEEeCCHHHHHHHHhC---CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHH
Confidence 3454444 56778888777653 3677777543 112323 677777766666 99999999999999999
Q ss_pred HHhcCCcEe
Q 009670 114 GINHGACDY 122 (529)
Q Consensus 114 al~~GA~DY 122 (529)
++.+||+..
T Consensus 202 AlalGA~gV 210 (336)
T COG2070 202 ALALGADGV 210 (336)
T ss_pred HHHhccHHH
Confidence 999999875
No 468
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=24.30 E-value=3.2e+02 Score=29.53 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=38.4
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 009670 24 MRVLAVDDDQTC----LKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL 90 (529)
Q Consensus 24 mrVLIVDDd~~v----~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~ 90 (529)
-++|||-|.... ...+...|++.|.++..+. ...++.+.+++.. +|+||- .-|.+-++..+.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~--~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESG--CDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCChHHHHHHHH
Confidence 477888775332 2446777877777665442 2456777777654 898874 345555666553
No 469
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=24.26 E-value=3.3e+02 Score=27.14 Aligned_cols=73 Identities=7% Similarity=0.073 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCeEEEE-CCH---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCC
Q 009670 35 CLKILEKFLRECQYEVTVT-NRA---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSD 107 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~~a-~sa---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d 107 (529)
..+.|+..++.++-.+.++ +-+ ...+.++.+....+.+|++|..+.-...+++++.+.....+.++++.....
T Consensus 28 ~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~~ 104 (241)
T PRK02090 28 AQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDAS 104 (241)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 4466788887765555543 333 334555555433578999998887667888888776666788888876544
No 470
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=24.23 E-value=1.6e+02 Score=29.93 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=36.1
Q ss_pred EEEEeCCHHHHHH----------HHHHHHhCCCeEEEEC--CHHHHHHHHHhc---CCCceEEEEecCC
Q 009670 26 VLAVDDDQTCLKI----------LEKFLRECQYEVTVTN--RAITALKMLREN---RNNFDLVISDVYM 79 (529)
Q Consensus 26 VLIVDDd~~v~~~----------L~~~Le~~gy~V~~a~--sa~eALe~L~e~---~~~pDLVIlDi~M 79 (529)
|.|||.+...+.. |...++.+|++|+.+. +.++..+.+.+. .++|-+||+|..+
T Consensus 174 iaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 174 IAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred EEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEeccc
Confidence 7788877655433 5666777899999774 455555545443 3369999998654
No 471
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=24.22 E-value=7.5e+02 Score=24.99 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCeEEEE-------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEec
Q 009670 36 LKILEKFLRECQYEVTVT-------NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSA 104 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~~a-------~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa 104 (529)
...++..+++.|++|+.. .+....+..++.. .+|+|++... +.+...+++.++ .....+++..+.
T Consensus 158 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 158 AEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAGH--FPDAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECCc--chhHHHHHHHHHHcCCCCCEEEEec
Confidence 445566666778776521 2334445555443 4888887543 335666666554 334556655443
No 472
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.19 E-value=4e+02 Score=25.47 Aligned_cols=62 Identities=24% Similarity=0.165 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 35 CLKILEKFLRECQYEVTVTNR---A---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~~a~s---a---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
+...+++.+++.||.+..... . .++++.+... .+|.+|+....+... +.+.+. ..+|+|++.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~~~~~~---~~~~~~--~~ipvv~~~ 84 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRK--QADGIILLDGSLPPT---ALTALA--KLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHc--CCCEEEEecCCCCHH---HHHHHh--cCCCEEEEe
Confidence 445677777788999775532 2 2334444433 488777643222211 333332 378999874
No 473
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=24.11 E-value=6.5e+02 Score=25.84 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=60.7
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEecCCCHHHHHH
Q 009670 39 LEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG---LEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 39 L~~~Le~~gy~V~~--a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir---~~~~ipVIvlTa~~d~e~v~~ 113 (529)
++..|+.....+.. .-...-..|.+... .||-+++|-.--..|.-.++..++ ..+..|| +.-.-.+...+++
T Consensus 8 fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pv-VR~p~g~~~~Ikq 84 (255)
T COG3836 8 FKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPV-VRPPVGDPVMIKQ 84 (255)
T ss_pred HHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCe-eeCCCCCHHHHHH
Confidence 45556543333332 22223344555443 599999999877778877877665 2334444 4556678899999
Q ss_pred HHhcCCcEeEeCCCCH-HHHHHHHH
Q 009670 114 GINHGACDYLLKPVRM-EELKNTWQ 137 (529)
Q Consensus 114 al~~GA~DYL~KP~~~-eeL~~~l~ 137 (529)
+++.||...|.-=++. ++-+..+.
T Consensus 85 ~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 85 LLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred HHccccceeeeeccCCHHHHHHHHH
Confidence 9999999999855554 44444443
No 474
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=24.10 E-value=8.9e+02 Score=26.07 Aligned_cols=100 Identities=9% Similarity=0.080 Sum_probs=61.2
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEec-----CCC-CCCH-----
Q 009670 23 GMRVLAVDDDQ----TCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDV-----YMP-DMDG----- 84 (529)
Q Consensus 23 ~mrVLIVDDd~----~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi-----~MP-dmdG----- 84 (529)
+..+++||-.. .+.+.++.+=+.+ +..|. -+.+++.|.+++.. ..|.|.+-+ +-- ..+|
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCH
Confidence 36778888433 3333333332233 23333 24577788777754 478887662 111 1222
Q ss_pred HHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 85 FKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 85 leLL~~I---r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+..+..+ .....+|||.=.+-.....+.+|+.+||+..++=
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 3333222 1345789999999999999999999999998876
No 475
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=24.05 E-value=2.7e+02 Score=31.04 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
+..+-++.|-+. ..|+|++|..-... .-++++++++. .+++|||+ -.-...+....++++||+..-
T Consensus 225 ~~~~ra~~Lv~a--GVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDA--GVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred cHHHHHHHHHHh--CCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 344444444443 48999999987533 34556777764 56888776 336677888899999997664
No 476
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=23.79 E-value=5.9e+02 Score=23.58 Aligned_cols=76 Identities=12% Similarity=0.063 Sum_probs=39.0
Q ss_pred CccEEEEE--eCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhcCCC
Q 009670 22 IGMRVLAV--DDDQTCLKILEKFLREC--QYEVTVTNRAITALKMLREN-RNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (529)
Q Consensus 22 ~~mrVLIV--DDd~~v~~~L~~~Le~~--gy~V~~a~sa~eALe~L~e~-~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ 96 (529)
+.|+|+|. |.+......+...+... ||.+..+....+.|+. . .-.+..| +.-|.....+++.+++. ..
T Consensus 3 ~~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~~---~~Gi~v~~v---i~~~~gg~~~i~~~I~~-g~ 75 (142)
T PRK05234 3 ARKRIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQE---ATGLDVTRL---LSGPLGGDQQIGALIAE-GK 75 (142)
T ss_pred cCcEEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHHh---ccCCeeEEE---EcCCCCCchhHHHHHHc-Cc
Confidence 45776665 44444444555556666 9998766655555442 2 1123334 22222222557777753 34
Q ss_pred CcEEEEec
Q 009670 97 LPVVMLSA 104 (529)
Q Consensus 97 ipVIvlTa 104 (529)
+-.|+.|.
T Consensus 76 i~lVInt~ 83 (142)
T PRK05234 76 IDMLIFFR 83 (142)
T ss_pred eeEEEEec
Confidence 55555544
No 477
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=23.78 E-value=1.1e+02 Score=32.61 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=32.3
Q ss_pred CCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEec
Q 009670 46 CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSA 104 (529)
Q Consensus 46 ~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa 104 (529)
.+..|.+..+-.+|.+.+......+|+||+|- |++ ..+...++-|+++-+
T Consensus 126 ~~~~V~V~~dR~~aa~~l~~~~~~~dviIlDD------GfQ---H~~L~RDleIvl~D~ 175 (338)
T PRK01906 126 TDAPVWVCPDRVAAAQALLAAHPGVDVIVSDD------GLQ---HYRLARDVEIVVFDH 175 (338)
T ss_pred CCCeEEEeCcHHHHHHHHHHhCCCCCEEEECC------CCc---cchhcCCcEEEEEcC
Confidence 46678888888787666654323589999984 542 223345677887754
No 478
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=23.63 E-value=2.5e+02 Score=25.19 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCeEEE---EC-CHHHHHHHHHhcCCCceEEEEe
Q 009670 35 CLKILEKFLRECQYEVTV---TN-RAITALKMLRENRNNFDLVISD 76 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~~---a~-sa~eALe~L~e~~~~pDLVIlD 76 (529)
....+..+|++.|+++.. +. +.++..+.+++..+.+|+||+-
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTT 65 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 455677778888887653 23 3333333443322237888773
No 479
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=23.60 E-value=7.9e+02 Score=26.11 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC-CCHHHHH
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP-VRMEELK 133 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP-~~~eeL~ 133 (529)
+.++..+.+... ..|+++.--...+ =|+.+++.+. ..+|||. |.... ..+.++.|.++++..+ .+.++|.
T Consensus 298 ~~~e~~~~~~~~--~~~v~v~~S~~Eg-~p~~llEAma--~G~PVIa-s~vgg---~~e~i~~~~~G~l~~~~~~~~~la 368 (407)
T cd04946 298 SNSEVYKLYKEN--PVDVFVNLSESEG-LPVSIMEAMS--FGIPVIA-TNVGG---TPEIVDNGGNGLLLSKDPTPNELV 368 (407)
T ss_pred ChHHHHHHHhhc--CCCEEEeCCcccc-ccHHHHHHHH--cCCCEEe-CCCCC---cHHHhcCCCcEEEeCCCCCHHHHH
Confidence 334455555433 2565554322222 2445556543 3478876 44333 4466778888998876 5889999
Q ss_pred HHHHHHHH
Q 009670 134 NTWQHVIR 141 (529)
Q Consensus 134 ~~l~~vlr 141 (529)
+++..++.
T Consensus 369 ~~I~~ll~ 376 (407)
T cd04946 369 SSLSKFID 376 (407)
T ss_pred HHHHHHHh
Confidence 99998875
No 480
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.52 E-value=4.9e+02 Score=25.47 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCC-C--CHHHHHHHHhcCCCCcEEEEecCCCHHHHHH-HHhcCCcEeEe
Q 009670 57 ITALKMLRENRNNFD-LVISDVYMPD-M--DGFKLLELVGLEMDLPVVMLSAYSDTKLVMK-GINHGACDYLL 124 (529)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~MPd-m--dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~-al~~GA~DYL~ 124 (529)
.+..+.+.+. ..| +++.++.--+ . -.+++++.++...++|||..-+-.+.+.+.+ +.+.||+..++
T Consensus 156 ~~~~~~~~~~--G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQL--GAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHc--CCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 4444555443 356 5666642211 1 2267788777667899999999999999888 56789988764
No 481
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.51 E-value=3.8e+02 Score=29.59 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=54.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH--HHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGF--KLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGl--eLL~~Ir~~~~ip 98 (529)
..+|+=||=.+...+..+.-.+..+.. +. .+.++++......+. ..||+||+|- ...|. ++++.+.......
T Consensus 315 ~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~-~~~d~VvvDP---PR~G~~~~~lk~l~~~~p~~ 390 (432)
T COG2265 315 VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG-YKPDVVVVDP---PRAGADREVLKQLAKLKPKR 390 (432)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc-CCCCEEEECC---CCCCCCHHHHHHHHhcCCCc
Confidence 468999999999888888888877765 44 456777766655322 2599999994 44443 4777776555555
Q ss_pred EEEEecC
Q 009670 99 VVMLSAY 105 (529)
Q Consensus 99 VIvlTa~ 105 (529)
||.+|-.
T Consensus 391 IvYVSCN 397 (432)
T COG2265 391 IVYVSCN 397 (432)
T ss_pred EEEEeCC
Confidence 6666543
No 482
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=23.32 E-value=2.3e+02 Score=27.05 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=41.3
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH----HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 53 TNRAITALKMLRENRNNFDLVISDVYMPDMDGF----KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 53 a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGl----eLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
..+..+..+.....+..+|+||+|-=.-..+=. +.++.+. .+..+||+.|+....+.+.+.+..-.++|..
T Consensus 70 fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~-k~~~kii~~Tg~~~~~~~~~ll~~~~~~f~p 144 (162)
T PF10237_consen 70 FYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLL-KPGGKIILCTGEEMEELIKKLLGLRMCDFQP 144 (162)
T ss_pred ECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHh-CccceEEEecHHHHHHHHHHHhCeeEEeEEe
Confidence 344444444433334469999999522111111 1223332 3467899999998888888888555566654
No 483
>PRK14967 putative methyltransferase; Provisional
Probab=23.23 E-value=6.9e+02 Score=24.20 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=32.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEe
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTV-TNRAITALKMLRENRNNFDLVISD 76 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~-a~sa~eALe~L~e~~~~pDLVIlD 76 (529)
+|..+|-++......+..++..+..+.. ..+..+ .+.. ..+|+||++
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~n 108 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSN 108 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEEC
Confidence 8999999999888888877766655442 234333 2222 359999998
No 484
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=23.20 E-value=5e+02 Score=24.76 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009670 35 CLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~~a~---sa~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~ 105 (529)
+...+++.+++.||.+.... +.. ++++.+... .+|.||+....+. ..+.++.+. ...+|+|++...
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~--~~~~~~~~~-~~~ipvV~~~~~ 88 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQ--RVDGLILTVADAA--TSPALDLLD-AERVPYVLAYND 88 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCC--chHHHHHHh-hCCCCEEEEecc
Confidence 34456666677899977653 233 334444333 4898887543332 234555554 346898888543
No 485
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=23.19 E-value=1.1e+02 Score=29.72 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 56 AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 56 a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
.+.+++.++..+ ||.|=+ ||+ ---++++.++....+|||.=-=-.+.+.+.+++++||...
T Consensus 106 l~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 106 LETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 356677777665 997754 787 4446677666666788875544577888999999999875
No 486
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=23.18 E-value=7.3e+02 Score=24.47 Aligned_cols=105 Identities=11% Similarity=0.155 Sum_probs=59.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC---CCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC---QYEVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~---gy~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
+++++|+.+.+.... +...+... .-.|.... +..+..+++.. .|++++-....+.-|+.+++.+. ..+
T Consensus 197 ~~~l~i~G~~~~~~~-~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma--~G~ 269 (335)
T cd03802 197 GIPLKLAGPVSDPDY-FYREIAPELLDGPDIEYLGEVGGAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA--CGT 269 (335)
T ss_pred CCeEEEEeCCCCHHH-HHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh--cCC
Confidence 367777766543221 12222111 22344333 34455555543 57777654444555777777654 346
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
|||.--. .. ..+.+..|..+|+..+ .++|..++..+.
T Consensus 270 PvI~~~~-~~---~~e~i~~~~~g~l~~~--~~~l~~~l~~l~ 306 (335)
T cd03802 270 PVIAFRR-GA---VPEVVEDGVTGFLVDS--VEELAAAVARAD 306 (335)
T ss_pred CEEEeCC-CC---chhheeCCCcEEEeCC--HHHHHHHHHHHh
Confidence 8884432 22 3356677889999987 888888887763
No 487
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.18 E-value=2.2e+02 Score=34.59 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=50.7
Q ss_pred CceEEEEe-cCCCCCCHHHH-HHHHhcCC-CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 69 NFDLVISD-VYMPDMDGFKL-LELVGLEM-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 69 ~pDLVIlD-i~MPdmdGleL-L~~Ir~~~-~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
.+-|+|+| ++|-..+.++. ++.+...+ .+.+|+.|.. ...+...+..-+.-|-.||++.+++...+++++...
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe--~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD--PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC--chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46788988 66665555554 45555433 4556666544 344566676677889999999999999999887653
No 488
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=23.15 E-value=3.4e+02 Score=30.17 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.++.+.+.+. .+|++++|..-.. ..-++.+++++. .+++|||+ -.-...+.+..++++||+...
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 4455555443 4899999975332 344566777764 45888886 556677888899999997764
No 489
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=23.03 E-value=3.4e+02 Score=28.30 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=36.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE---VT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~---V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
.+|+-||-....++..++-++-.+++ +. .+.+.-+.++.++.. ..+|+||+|-
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~-~~fD~IIlDP 203 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKG-GRFDLIILDP 203 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHT-T-EEEEEE--
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcC-CCCCEEEECC
Confidence 47999999999999988888766543 33 567888877777654 3799999995
No 490
>PRK10307 putative glycosyl transferase; Provisional
Probab=23.03 E-value=6.1e+02 Score=26.62 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=58.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCH----HHHHHHHhcCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDG----FKLLELVGLEM 95 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdG----leLL~~Ir~~~ 95 (529)
.++++||.|.+. ...++++.+..+.. |.... ..++..+++.. .|+.++=.. .+..| ..+++.+ ..
T Consensus 259 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~----aDi~v~ps~-~e~~~~~~p~kl~eam--a~ 330 (412)
T PRK10307 259 DLIFVICGQGGG-KARLEKMAQCRGLPNVHFLPLQPYDRLPALLKM----ADCHLLPQK-AGAADLVLPSKLTNML--AS 330 (412)
T ss_pred CeEEEEECCChh-HHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHh----cCEeEEeec-cCcccccCcHHHHHHH--Hc
Confidence 367778876653 34455555544432 44332 34455555543 465554222 22211 2233432 34
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.+|||....... ...+.++ + ++++..|-+.++|.+++..++.
T Consensus 331 G~PVi~s~~~g~--~~~~~i~-~-~G~~~~~~d~~~la~~i~~l~~ 372 (412)
T PRK10307 331 GRNVVATAEPGT--ELGQLVE-G-IGVCVEPESVEALVAAIAALAR 372 (412)
T ss_pred CCCEEEEeCCCc--hHHHHHh-C-CcEEeCCCCHHHHHHHHHHHHh
Confidence 578876543221 1122333 4 7899999999999999998864
No 491
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.86 E-value=7.8e+02 Score=24.70 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCeEEEE-------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEec
Q 009670 38 ILEKFLRECQYEVTVT-------NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSA 104 (529)
Q Consensus 38 ~L~~~Le~~gy~V~~a-------~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa 104 (529)
.++..+++.|.+|+.. .+....+..++.. .||+|++-.. ..++..+++.++ .....++|..++
T Consensus 156 ~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~--~pd~v~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~~ 226 (312)
T cd06346 156 AFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAG--GPDALVVIGY--PETGSGILRSAYEQGLFDKFLLTDG 226 (312)
T ss_pred HHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc--CCCEEEEecc--cchHHHHHHHHHHcCCCCceEeecc
Confidence 3445555566665421 2444455555443 3777665432 225666665443 223444544433
No 492
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.80 E-value=3.7e+02 Score=27.94 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=57.9
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------HHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 24 MRVLAV--DDDQTCL---KILEKFLRECQYEVTVTNRAITALKM-------LRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 24 mrVLIV--DDd~~v~---~~L~~~Le~~gy~V~~a~sa~eALe~-------L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
.+|+|| -+.+... ..+..+|++.|+++.........+.. .......+|+||+ -|.||- +++..
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~aa 80 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGAA 80 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHHH
Confidence 357777 3344444 44556666778888765443322210 0111124677776 377884 33322
Q ss_pred h--cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 92 G--LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 92 r--~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+ ....+||+=+- .|=.+||. .++++++...+++++..
T Consensus 81 ~~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 81 RVLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred HHhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcC
Confidence 2 23467877553 24567776 68889999999988764
No 493
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.77 E-value=4.6e+02 Score=29.00 Aligned_cols=104 Identities=18% Similarity=0.129 Sum_probs=61.9
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCC----HHHHH---HHH
Q 009670 23 GMRVLAVD----DDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD----GFKLL---ELV 91 (529)
Q Consensus 23 ~mrVLIVD----Dd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmd----GleLL---~~I 91 (529)
.++|.|+- =+..--+.+...|...||+++. ..+..|+||+...-.-.+ -...+ +.+
T Consensus 23 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~-------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~ 89 (467)
T PRK14329 23 TKKLFIESYGCQMNFADSEIVASILQMAGYNTTE-------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKFNAL 89 (467)
T ss_pred CCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-------------CcccCCEEEEeCcceechHHHHHHHHHHHHHHH
Confidence 34677764 4455557788888888998753 112479999886544322 22233 323
Q ss_pred h-cCCCCcEEEEecCCCHHHHHHHHhc-CCcEeEeCCCCHHHHHHHHHHHH
Q 009670 92 G-LEMDLPVVMLSAYSDTKLVMKGINH-GACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 92 r-~~~~ipVIvlTa~~d~e~v~~al~~-GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
+ ..++.+ |++++.--...-.+.++. +..||++.+-....+...+..+.
T Consensus 90 k~~~p~~~-ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 90 KKKNPKLI-VGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred HhhCCCcE-EEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 3 345554 455554333333444544 44899999888888887776653
No 494
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=22.77 E-value=5.3e+02 Score=26.57 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=32.9
Q ss_pred HHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 85 FKLLELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 85 leLL~~Ir~~~--~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
++.+..++... ++|||...+-.+.+.+.+.+.+||+...+
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 56666665444 89999999999999999999999987654
No 495
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=22.73 E-value=8e+02 Score=24.76 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=59.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEec-------CCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDV-------YMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi-------~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
-+++.+|++...+. .+|+|=+-+ .-|...-+++++.+.. ..++||.=--+..++.+.++++.||+...+
T Consensus 133 D~St~ee~l~a~~~---G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 133 DCSTFEEGLNAHKL---GFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred ccCCHHHHHHHHHc---CCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEE
Confidence 45788898887654 488764322 2344566888887754 778999988999999999999999999877
Q ss_pred CC-C-CHHHHHHHHHHH
Q 009670 125 KP-V-RMEELKNTWQHV 139 (529)
Q Consensus 125 KP-~-~~eeL~~~l~~v 139 (529)
-- + +++++.......
T Consensus 209 GsAITRp~~It~~F~~~ 225 (229)
T COG3010 209 GSAITRPEEITQWFVDA 225 (229)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 65 3 344444444433
No 496
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=22.65 E-value=4e+02 Score=26.42 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=52.1
Q ss_pred HHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEE-EecCCCCCCHHHH-------HHHHhcCCCCcEEEEecCC
Q 009670 39 LEKFLRECQYEVTVT----NRAITALKMLRENRNNFDLVI-SDVYMPDMDGFKL-------LELVGLEMDLPVVMLSAYS 106 (529)
Q Consensus 39 L~~~Le~~gy~V~~a----~sa~eALe~L~e~~~~pDLVI-lDi~MPdmdGleL-------L~~Ir~~~~ipVIvlTa~~ 106 (529)
..+.+++.|..+..+ .+.++...+++. ...|.|+ +.++ |+.+|-.+ ++.++....--.|.+.+--
T Consensus 106 ~l~~ik~~G~~~gval~p~t~~e~l~~~l~~--~~vD~Vl~m~v~-pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI 182 (228)
T PTZ00170 106 VARKIREAGMKVGVAIKPKTPVEVLFPLIDT--DLVDMVLVMTVE-PGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI 182 (228)
T ss_pred HHHHHHHCCCeEEEEECCCCCHHHHHHHHcc--chhhhHHhhhcc-cCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC
Confidence 334444556654433 333444334321 1367554 4443 66666433 2333332212357788888
Q ss_pred CHHHHHHHHhcCCcEeEe-----CCCCHHHHHHHHHHHH
Q 009670 107 DTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVI 140 (529)
Q Consensus 107 d~e~v~~al~~GA~DYL~-----KP~~~eeL~~~l~~vl 140 (529)
..+.+..+.++||+-++. +.-++.+-...++..+
T Consensus 183 ~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~ 221 (228)
T PTZ00170 183 NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESV 221 (228)
T ss_pred CHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHH
Confidence 889999999999986644 3323444444444433
No 497
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=22.32 E-value=2.2e+02 Score=28.11 Aligned_cols=71 Identities=11% Similarity=0.070 Sum_probs=48.6
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 47 QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 47 gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
++.|..+.+.+++.+++.. ..|+|-+|...-. ..--++++.++... .++|..-...+....|.++|+ ||+.
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~-D~I~ 117 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRPETLEELIREIKEKY---QLVMADISTLEEAINAAELGF-DIIG 117 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-SS-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT--SEEE
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCCcCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCC-CEEE
Confidence 4578888888999888874 4899999985432 56667777777654 777888889999999999995 5554
No 498
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=22.27 E-value=4.8e+02 Score=25.25 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=30.2
Q ss_pred CCCccEEEEEeCC-H----HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEe
Q 009670 20 FPIGMRVLAVDDD-Q----TCLKILEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISD 76 (529)
Q Consensus 20 ~p~~mrVLIVDDd-~----~v~~~L~~~Le~~gy~V~~--a~sa~eALe~L~e~~~~pDLVIlD 76 (529)
+|..-+|.++-++ . ...+.+++.+++.|+.+.. ..+..+..+.++.....+|.|++-
T Consensus 128 ~~g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~dai~~~ 191 (281)
T cd06325 128 LPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGKVDAIYVP 191 (281)
T ss_pred CCCCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhcccCCEEEEc
Confidence 4555677766332 1 2235566666667776543 234444444444433347888873
No 499
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=22.22 E-value=3.9e+02 Score=27.71 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=45.1
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE--ecCCCCC-----CHHHHHHHHhcC
Q 009670 23 GMRVLAVDDDQTCL-KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS--DVYMPDM-----DGFKLLELVGLE 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v~-~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl--Di~MPdm-----dGleLL~~Ir~~ 94 (529)
.++|++.|..|... ..+...|.+.|+.++...+..-+.- +. .+|.||+ |-.+.+. -|--.+..+.+.
T Consensus 135 ~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~-m~----~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~ 209 (275)
T PRK08335 135 RFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLF-AK----EATLALVGADNVTRDGYVVNKAGTYLLALACHD 209 (275)
T ss_pred ceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHH-HH----hCCEEEECccEEecCCCEeehhhHHHHHHHHHH
Confidence 36788777777543 3456667777888776555443332 22 2777777 4444432 233333444456
Q ss_pred CCCcEEEEecC
Q 009670 95 MDLPVVMLSAY 105 (529)
Q Consensus 95 ~~ipVIvlTa~ 105 (529)
.++||++++..
T Consensus 210 ~~vPfyV~a~~ 220 (275)
T PRK08335 210 NGVPFYVAAET 220 (275)
T ss_pred cCCCEEEECcc
Confidence 67888877543
No 500
>PLN02316 synthase/transferase
Probab=22.20 E-value=6.8e+02 Score=30.93 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=22.2
Q ss_pred CCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 118 GACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 118 GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+.++|+..|.+.+.|..+|.+++..
T Consensus 974 ~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 974 EPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred CCceEEeCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999988764
Done!