Query 009670
Match_columns 529
No_of_seqs 384 out of 2125
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 6.5E-25 2.2E-29 198.9 16.4 119 22-142 11-133 (134)
2 3f6p_A Transcriptional regulat 99.9 4.3E-21 1.5E-25 165.7 16.8 117 24-142 3-119 (120)
3 3gl9_A Response regulator; bet 99.9 4.9E-21 1.7E-25 166.1 17.1 116 24-141 3-121 (122)
4 2lpm_A Two-component response 99.9 1.9E-23 6.6E-28 186.8 1.0 113 22-140 7-120 (123)
5 3t6k_A Response regulator rece 99.9 1.3E-20 4.4E-25 166.4 17.7 120 23-144 4-126 (136)
6 2r25_B Osmosensing histidine p 99.8 2.6E-20 8.9E-25 163.9 16.9 120 23-142 2-127 (133)
7 3h1g_A Chemotaxis protein CHEY 99.8 5.1E-20 1.7E-24 160.6 16.9 119 23-142 5-127 (129)
8 3m6m_D Sensory/regulatory prot 99.8 1.1E-19 3.6E-24 162.2 16.9 119 22-142 13-136 (143)
9 2pl1_A Transcriptional regulat 99.8 2.7E-19 9.2E-24 152.8 18.2 118 24-143 1-119 (121)
10 1zgz_A Torcad operon transcrip 99.8 3.2E-19 1.1E-23 152.9 18.2 117 24-142 3-119 (122)
11 3gt7_A Sensor protein; structu 99.8 2.2E-19 7.4E-24 161.8 17.9 120 23-144 7-129 (154)
12 2a9o_A Response regulator; ess 99.8 2.1E-19 7.3E-24 152.9 16.8 117 24-142 2-118 (120)
13 3rqi_A Response regulator prot 99.8 2.9E-20 9.9E-25 173.2 12.1 119 23-143 7-126 (184)
14 1dbw_A Transcriptional regulat 99.8 3.5E-19 1.2E-23 154.1 18.0 118 23-142 3-121 (126)
15 3crn_A Response regulator rece 99.8 2.5E-19 8.7E-24 156.8 17.2 119 23-143 3-122 (132)
16 1a04_A Nitrate/nitrite respons 99.8 1.8E-19 6E-24 170.9 17.2 120 23-144 5-127 (215)
17 1srr_A SPO0F, sporulation resp 99.8 2.6E-19 8.9E-24 154.2 15.9 117 24-142 4-121 (124)
18 2qzj_A Two-component response 99.8 3.4E-19 1.2E-23 157.3 16.8 119 23-143 4-122 (136)
19 1xhf_A DYE resistance, aerobic 99.8 4.6E-19 1.6E-23 152.1 17.1 117 24-142 4-120 (123)
20 1zh2_A KDP operon transcriptio 99.8 3.6E-19 1.2E-23 151.7 16.1 118 24-143 2-119 (121)
21 3jte_A Response regulator rece 99.8 6.1E-19 2.1E-23 155.5 18.0 122 23-144 3-125 (143)
22 1jbe_A Chemotaxis protein CHEY 99.8 6.1E-19 2.1E-23 152.4 17.6 119 23-143 4-126 (128)
23 1tmy_A CHEY protein, TMY; chem 99.8 4.4E-19 1.5E-23 151.6 16.2 116 23-140 2-119 (120)
24 3hdv_A Response regulator; PSI 99.8 7.6E-19 2.6E-23 153.6 17.8 122 22-144 6-129 (136)
25 1mb3_A Cell division response 99.8 3.3E-19 1.1E-23 152.9 15.1 117 24-142 2-121 (124)
26 3lua_A Response regulator rece 99.8 1.1E-19 3.7E-24 160.1 12.4 120 23-144 4-129 (140)
27 3hv2_A Response regulator/HD d 99.8 6E-19 2.1E-23 158.2 17.4 122 21-144 12-135 (153)
28 1i3c_A Response regulator RCP1 99.8 6.2E-19 2.1E-23 157.7 17.2 122 22-143 7-138 (149)
29 3f6c_A Positive transcription 99.8 1.8E-19 6.2E-24 156.9 13.3 123 23-147 1-125 (134)
30 3h5i_A Response regulator/sens 99.8 1.2E-19 4.1E-24 160.4 12.3 121 23-144 5-126 (140)
31 1p6q_A CHEY2; chemotaxis, sign 99.8 3.5E-19 1.2E-23 154.1 14.9 118 23-142 6-127 (129)
32 3eod_A Protein HNR; response r 99.8 4.1E-19 1.4E-23 154.2 15.3 120 22-143 6-127 (130)
33 3grc_A Sensor protein, kinase; 99.8 2.6E-19 8.8E-24 157.4 14.2 121 23-145 6-130 (140)
34 3r0j_A Possible two component 99.8 6.3E-19 2.2E-23 171.9 18.4 121 22-144 22-143 (250)
35 3mm4_A Histidine kinase homolo 99.8 3.3E-19 1.1E-23 169.9 15.9 122 21-144 59-198 (206)
36 3kto_A Response regulator rece 99.8 1.7E-19 5.8E-24 158.7 12.7 120 23-144 6-128 (136)
37 3heb_A Response regulator rece 99.8 1.3E-18 4.4E-23 155.6 18.6 122 23-144 4-137 (152)
38 3b2n_A Uncharacterized protein 99.8 6.3E-19 2.2E-23 154.4 16.1 119 24-144 4-125 (133)
39 3kht_A Response regulator; PSI 99.8 6.5E-19 2.2E-23 155.8 16.3 120 23-144 5-130 (144)
40 3hdg_A Uncharacterized protein 99.8 5.3E-19 1.8E-23 154.8 15.5 120 23-144 7-127 (137)
41 1dz3_A Stage 0 sporulation pro 99.8 5.6E-19 1.9E-23 153.6 15.3 118 24-143 3-124 (130)
42 3ilh_A Two component response 99.8 1E-18 3.5E-23 153.7 17.0 122 22-143 8-140 (146)
43 3i42_A Response regulator rece 99.8 2.7E-19 9.1E-24 154.7 12.9 118 23-143 3-123 (127)
44 4e7p_A Response regulator; DNA 99.8 9E-19 3.1E-23 156.5 16.6 123 20-144 17-142 (150)
45 3cnb_A DNA-binding response re 99.8 1.8E-18 6.3E-23 151.5 18.1 121 22-144 7-132 (143)
46 1k68_A Phytochrome response re 99.8 1.2E-18 4E-23 151.6 16.6 122 23-144 2-133 (140)
47 3hzh_A Chemotaxis response reg 99.8 8.1E-19 2.8E-23 158.6 15.7 119 23-141 36-156 (157)
48 3n0r_A Response regulator; sig 99.8 8.9E-20 3E-24 184.0 10.4 118 23-144 160-279 (286)
49 3cfy_A Putative LUXO repressor 99.8 8.9E-19 3E-23 154.8 15.4 118 24-143 5-123 (137)
50 3nhm_A Response regulator; pro 99.8 9.9E-19 3.4E-23 152.0 15.2 118 23-144 4-124 (133)
51 1mvo_A PHOP response regulator 99.8 1.4E-18 4.9E-23 151.6 16.2 118 24-143 4-122 (136)
52 2zay_A Response regulator rece 99.8 1.1E-18 3.7E-23 154.6 15.6 121 22-144 7-130 (147)
53 2jba_A Phosphate regulon trans 99.8 2.8E-19 9.4E-24 154.0 10.9 118 24-143 3-123 (127)
54 3q9s_A DNA-binding response re 99.8 7.9E-19 2.7E-23 172.2 15.6 120 23-144 37-156 (249)
55 1k66_A Phytochrome response re 99.8 2E-18 6.8E-23 152.0 16.5 122 23-144 6-140 (149)
56 4dad_A Putative pilus assembly 99.8 5.7E-19 1.9E-23 156.6 12.8 123 21-143 18-142 (146)
57 3luf_A Two-component system re 99.8 1.2E-18 4E-23 172.6 16.2 121 23-144 124-247 (259)
58 3eul_A Possible nitrate/nitrit 99.8 2.9E-18 1E-22 153.3 17.2 126 19-146 11-139 (152)
59 3c3m_A Response regulator rece 99.8 2.1E-18 7.2E-23 152.0 15.9 118 24-143 4-124 (138)
60 3cg0_A Response regulator rece 99.8 2.2E-18 7.6E-23 150.8 15.9 121 22-144 8-130 (140)
61 3snk_A Response regulator CHEY 99.8 1.1E-19 3.8E-24 159.4 7.4 119 22-142 13-133 (135)
62 1s8n_A Putative antiterminator 99.8 1.3E-18 4.5E-23 163.9 15.2 119 23-143 13-132 (205)
63 3n53_A Response regulator rece 99.8 6.8E-19 2.3E-23 155.0 11.6 120 23-145 3-125 (140)
64 3lte_A Response regulator; str 99.8 4.5E-18 1.6E-22 147.6 16.6 119 22-143 5-126 (132)
65 2qr3_A Two-component system re 99.8 4.8E-18 1.6E-22 148.7 16.2 120 23-144 3-128 (140)
66 3cg4_A Response regulator rece 99.8 1.1E-18 3.7E-23 153.5 12.0 121 22-144 6-129 (142)
67 1kgs_A DRRD, DNA binding respo 99.8 4E-18 1.4E-22 162.1 16.8 120 23-144 2-122 (225)
68 3dzd_A Transcriptional regulat 99.8 1.3E-18 4.5E-23 181.7 14.5 119 24-144 1-120 (368)
69 3c3w_A Two component transcrip 99.8 4.7E-19 1.6E-23 170.4 10.2 119 24-144 2-123 (225)
70 2qxy_A Response regulator; reg 99.8 3.4E-18 1.2E-22 150.6 14.7 119 23-144 4-123 (142)
71 1dcf_A ETR1 protein; beta-alph 99.8 3.5E-18 1.2E-22 149.7 14.6 119 22-143 6-130 (136)
72 1yio_A Response regulatory pro 99.8 1.9E-18 6.4E-23 162.7 13.6 119 23-143 4-123 (208)
73 3kcn_A Adenylate cyclase homol 99.8 5.5E-18 1.9E-22 151.6 15.9 120 23-144 4-125 (151)
74 3a10_A Response regulator; pho 99.8 2.9E-18 9.9E-23 145.6 13.2 113 24-140 2-115 (116)
75 3klo_A Transcriptional regulat 99.8 2.1E-19 7.2E-24 172.3 6.7 121 23-145 7-132 (225)
76 2rjn_A Response regulator rece 99.8 7.6E-18 2.6E-22 150.9 16.4 121 22-144 6-128 (154)
77 2ayx_A Sensor kinase protein R 99.8 3.1E-18 1.1E-22 168.6 14.8 120 22-143 128-248 (254)
78 1qkk_A DCTD, C4-dicarboxylate 99.8 7E-18 2.4E-22 151.3 14.9 120 23-144 3-123 (155)
79 3cz5_A Two-component response 99.8 9.3E-18 3.2E-22 150.1 15.4 120 23-144 5-127 (153)
80 2qvg_A Two component response 99.8 1.3E-17 4.6E-22 146.6 16.1 120 23-142 7-135 (143)
81 3cu5_A Two component transcrip 99.8 3E-18 1E-22 152.1 11.9 117 24-142 3-123 (141)
82 2gkg_A Response regulator homo 99.8 8.7E-18 3E-22 143.7 14.1 116 24-142 6-125 (127)
83 3eq2_A Probable two-component 99.8 3.3E-18 1.1E-22 178.3 13.7 118 23-142 5-124 (394)
84 2oqr_A Sensory transduction pr 99.8 6E-18 2.1E-22 161.7 14.3 118 24-143 5-122 (230)
85 2jk1_A HUPR, hydrogenase trans 99.8 2E-17 6.8E-22 145.7 16.5 117 24-143 2-120 (139)
86 1ys7_A Transcriptional regulat 99.8 6.7E-18 2.3E-22 161.4 14.0 120 23-144 7-127 (233)
87 2gwr_A DNA-binding response re 99.7 6.7E-18 2.3E-22 163.2 13.5 118 24-143 6-123 (238)
88 1ny5_A Transcriptional regulat 99.7 1.2E-17 4.2E-22 175.3 16.2 118 24-143 1-119 (387)
89 1w25_A Stalked-cell differenti 99.7 1.7E-17 5.9E-22 175.5 16.9 118 24-143 2-122 (459)
90 2qsj_A DNA-binding response re 99.7 1.2E-17 4.3E-22 149.2 13.4 122 23-146 3-128 (154)
91 3kyj_B CHEY6 protein, putative 99.7 8.9E-18 3E-22 148.9 11.1 115 20-135 10-128 (145)
92 2pln_A HP1043, response regula 99.7 5.1E-17 1.8E-21 142.4 15.4 116 21-142 16-133 (137)
93 2qv0_A Protein MRKE; structura 99.7 7.3E-17 2.5E-21 142.1 16.4 118 23-144 9-129 (143)
94 3c97_A Signal transduction his 99.7 1.7E-17 5.7E-22 146.3 12.2 116 24-144 11-132 (140)
95 2rdm_A Response regulator rece 99.7 7.1E-17 2.4E-21 139.8 16.0 119 23-144 5-125 (132)
96 2j48_A Two-component sensor ki 99.7 2.3E-17 7.7E-22 138.6 12.0 113 23-140 1-116 (119)
97 3eqz_A Response regulator; str 99.7 1.2E-17 4.2E-22 144.9 9.7 118 23-143 3-126 (135)
98 3t8y_A CHEB, chemotaxis respon 99.7 6.2E-17 2.1E-21 147.6 14.8 118 23-142 25-155 (164)
99 3bre_A Probable two-component 99.7 3E-17 1E-21 167.5 13.8 117 23-141 18-138 (358)
100 1p2f_A Response regulator; DRR 99.7 5.1E-17 1.7E-21 154.4 13.8 115 24-143 3-118 (220)
101 1qo0_D AMIR; binding protein, 99.7 2.1E-17 7.2E-22 154.6 9.8 114 23-143 12-126 (196)
102 3sy8_A ROCR; TIM barrel phosph 99.7 7.2E-17 2.5E-21 169.3 12.7 121 23-144 3-130 (400)
103 2hqr_A Putative transcriptiona 99.7 1.3E-16 4.3E-21 152.0 12.9 114 24-143 1-116 (223)
104 2b4a_A BH3024; flavodoxin-like 99.7 6E-17 2.1E-21 142.1 9.6 118 19-142 11-131 (138)
105 1dc7_A NTRC, nitrogen regulati 99.7 1.8E-18 6.1E-23 147.7 -1.1 118 24-143 4-122 (124)
106 1a2o_A CHEB methylesterase; ba 99.6 2.9E-15 9.8E-20 155.5 15.7 118 23-142 3-133 (349)
107 3luf_A Two-component system re 99.6 1.2E-15 4.2E-20 150.8 9.3 102 24-129 5-107 (259)
108 2vyc_A Biodegradative arginine 99.6 3.3E-15 1.1E-19 169.5 9.9 119 24-143 1-134 (755)
109 1irz_A ARR10-B; helix-turn-hel 99.5 1.4E-14 4.9E-19 114.5 7.1 62 188-249 2-63 (64)
110 1w25_A Stalked-cell differenti 98.9 1.5E-08 5.2E-13 106.9 16.9 117 23-143 152-271 (459)
111 3cwo_X Beta/alpha-barrel prote 98.9 7.1E-10 2.4E-14 105.3 6.1 92 49-142 7-101 (237)
112 2ayx_A Sensor kinase protein R 97.1 0.00071 2.4E-08 65.8 7.0 97 21-141 9-105 (254)
113 3n75_A LDC, lysine decarboxyla 96.9 0.0011 3.8E-08 74.8 7.4 104 36-143 19-124 (715)
114 3tm8_A BD1817, uncharacterized 96.8 0.00032 1.1E-08 71.8 1.9 55 217-288 210-265 (328)
115 3q7r_A Transcriptional regulat 96.2 0.013 4.5E-07 50.1 7.5 104 24-143 13-119 (121)
116 3cwo_X Beta/alpha-barrel prote 95.7 0.052 1.8E-06 50.6 10.2 82 55-137 131-221 (237)
117 2yxb_A Coenzyme B12-dependent 94.6 0.59 2E-05 42.7 13.5 117 23-142 18-145 (161)
118 3q58_A N-acetylmannosamine-6-p 93.2 0.67 2.3E-05 44.8 11.6 99 23-125 101-210 (229)
119 3igs_A N-acetylmannosamine-6-p 91.5 1.7 5.7E-05 42.1 12.0 99 23-125 101-210 (232)
120 1wv2_A Thiazole moeity, thiazo 90.4 1.5 5.1E-05 43.5 10.4 98 40-141 128-237 (265)
121 1ccw_A Protein (glutamate muta 87.4 14 0.00049 32.3 14.3 107 30-139 14-133 (137)
122 2i2x_B MTAC, methyltransferase 87.0 10 0.00035 36.9 14.0 110 23-140 123-242 (258)
123 2l69_A Rossmann 2X3 fold prote 85.7 8.2 0.00028 32.5 10.4 114 25-142 4-123 (134)
124 3o63_A Probable thiamine-phosp 85.4 9 0.00031 37.2 12.5 84 52-139 141-238 (243)
125 3fkq_A NTRC-like two-domain pr 84.6 6.9 0.00024 39.9 11.9 103 23-140 21-126 (373)
126 1y80_A Predicted cobalamin bin 82.6 7.3 0.00025 36.4 10.3 98 23-125 88-197 (210)
127 3ezx_A MMCP 1, monomethylamine 80.3 4.4 0.00015 38.6 7.9 98 23-125 92-203 (215)
128 1yad_A Regulatory protein TENI 79.2 13 0.00044 34.7 10.7 74 47-124 110-191 (221)
129 2htm_A Thiazole biosynthesis p 79.1 4.1 0.00014 40.5 7.3 96 42-141 119-228 (268)
130 4fo4_A Inosine 5'-monophosphat 79.0 16 0.00056 37.6 12.2 99 23-125 120-240 (366)
131 3qja_A IGPS, indole-3-glycerol 78.8 20 0.00068 35.4 12.3 87 35-125 150-242 (272)
132 1xi3_A Thiamine phosphate pyro 78.3 17 0.00058 33.4 11.1 69 52-124 114-189 (215)
133 3hc1_A Uncharacterized HDOD do 76.6 0.99 3.4E-05 45.1 2.1 52 225-291 176-228 (305)
134 1geq_A Tryptophan synthase alp 76.6 6.1 0.00021 37.6 7.7 54 85-138 69-128 (248)
135 3ffs_A Inosine-5-monophosphate 76.5 16 0.00053 38.3 11.3 99 23-124 156-274 (400)
136 2gjl_A Hypothetical protein PA 74.6 39 0.0013 33.6 13.4 81 41-124 112-200 (328)
137 3f4w_A Putative hexulose 6 pho 74.3 27 0.00091 32.1 11.3 115 23-140 77-207 (211)
138 2xij_A Methylmalonyl-COA mutas 74.2 27 0.00092 39.5 13.1 117 23-142 604-731 (762)
139 1req_A Methylmalonyl-COA mutas 73.4 20 0.00067 40.5 11.6 117 23-142 596-723 (727)
140 3kp1_A D-ornithine aminomutase 71.6 14 0.00048 41.1 9.6 115 23-142 602-735 (763)
141 1xm3_A Thiazole biosynthesis p 71.2 6.2 0.00021 38.6 6.3 76 47-125 126-207 (264)
142 2bfw_A GLGA glycogen synthase; 71.0 46 0.0016 29.3 11.8 106 23-141 70-179 (200)
143 3khj_A Inosine-5-monophosphate 70.3 22 0.00074 36.5 10.4 99 23-124 117-235 (361)
144 2ekc_A AQ_1548, tryptophan syn 70.2 12 0.00042 36.4 8.2 72 69-140 44-144 (262)
145 1qop_A Tryptophan synthase alp 69.5 10 0.00034 37.1 7.4 73 69-141 44-145 (268)
146 1xrs_B D-lysine 5,6-aminomutas 68.9 20 0.00069 35.3 9.4 114 23-141 120-257 (262)
147 4dzz_A Plasmid partitioning pr 67.8 7.6 0.00026 35.0 5.8 52 23-77 30-83 (206)
148 1r8j_A KAIA; circadian clock p 66.7 38 0.0013 33.6 10.7 82 22-105 8-90 (289)
149 2gek_A Phosphatidylinositol ma 66.0 23 0.00078 34.9 9.4 108 23-142 240-349 (406)
150 3usb_A Inosine-5'-monophosphat 65.2 50 0.0017 35.4 12.4 100 23-125 268-388 (511)
151 2tps_A Protein (thiamin phosph 64.9 31 0.0011 31.9 9.6 68 53-124 123-199 (227)
152 3fro_A GLGA glycogen synthase; 64.7 59 0.002 32.1 12.3 106 23-141 285-394 (439)
153 3bo9_A Putative nitroalkan dio 64.2 49 0.0017 33.1 11.5 81 41-124 118-204 (326)
154 2v82_A 2-dehydro-3-deoxy-6-pho 63.8 30 0.001 31.8 9.3 93 41-140 95-197 (212)
155 3fwz_A Inner membrane protein 63.6 21 0.00071 30.7 7.5 92 23-124 30-124 (140)
156 2q5c_A NTRC family transcripti 62.9 69 0.0023 29.7 11.5 53 23-75 4-57 (196)
157 3vnd_A TSA, tryptophan synthas 61.9 15 0.00051 36.3 6.9 56 85-140 83-145 (267)
158 3bw2_A 2-nitropropane dioxygen 61.2 57 0.0019 33.1 11.5 77 45-124 143-236 (369)
159 2l2q_A PTS system, cellobiose- 60.7 11 0.00038 31.7 5.1 78 21-104 2-84 (109)
160 2f9f_A First mannosyl transfer 60.7 66 0.0022 28.1 10.6 107 23-142 50-162 (177)
161 3rht_A (gatase1)-like protein; 60.7 3.7 0.00013 40.4 2.3 78 23-106 4-89 (259)
162 3r2g_A Inosine 5'-monophosphat 60.2 1.3E+02 0.0044 30.9 13.9 97 23-124 112-227 (361)
163 1jcn_A Inosine monophosphate d 60.1 63 0.0022 34.3 12.1 99 23-124 267-386 (514)
164 2d00_A V-type ATP synthase sub 59.6 48 0.0016 28.1 8.9 76 23-104 3-80 (109)
165 2z6i_A Trans-2-enoyl-ACP reduc 59.6 50 0.0017 33.0 10.6 79 43-124 106-190 (332)
166 3tsm_A IGPS, indole-3-glycerol 59.5 64 0.0022 31.8 11.1 86 36-125 158-249 (272)
167 4avf_A Inosine-5'-monophosphat 59.4 67 0.0023 34.2 12.0 99 23-125 241-361 (490)
168 2iw1_A Lipopolysaccharide core 58.9 47 0.0016 32.1 10.1 106 23-141 228-336 (374)
169 1ka9_F Imidazole glycerol phos 58.9 60 0.0021 30.5 10.6 78 57-136 155-242 (252)
170 3c48_A Predicted glycosyltrans 58.8 80 0.0027 31.4 12.1 108 23-141 276-390 (438)
171 1y0e_A Putative N-acetylmannos 58.6 42 0.0014 31.0 9.3 87 36-125 107-204 (223)
172 2c6q_A GMP reductase 2; TIM ba 58.2 73 0.0025 32.4 11.6 101 23-127 132-255 (351)
173 1geq_A Tryptophan synthase alp 58.0 49 0.0017 31.2 9.7 83 39-125 125-220 (248)
174 3beo_A UDP-N-acetylglucosamine 57.6 89 0.003 30.3 11.9 59 70-141 283-341 (375)
175 4adt_A Pyridoxine biosynthetic 57.2 67 0.0023 32.1 10.9 58 85-142 196-260 (297)
176 1eep_A Inosine 5'-monophosphat 56.8 53 0.0018 33.8 10.5 88 34-124 180-284 (404)
177 2v5j_A 2,4-dihydroxyhept-2-ENE 56.4 1E+02 0.0036 30.3 12.1 96 39-138 30-132 (287)
178 2w6r_A Imidazole glycerol phos 56.1 48 0.0016 31.5 9.4 68 56-125 158-229 (266)
179 1thf_D HISF protein; thermophI 55.7 73 0.0025 29.9 10.6 68 56-125 153-224 (253)
180 3c3y_A Pfomt, O-methyltransfer 55.2 47 0.0016 31.1 9.1 59 20-78 92-156 (237)
181 2lci_A Protein OR36; structura 54.9 33 0.0011 28.9 6.7 27 25-51 53-79 (134)
182 3duw_A OMT, O-methyltransferas 54.2 54 0.0018 29.8 9.1 72 18-91 78-153 (223)
183 4had_A Probable oxidoreductase 53.6 97 0.0033 30.5 11.5 110 20-142 20-136 (350)
184 1v4v_A UDP-N-acetylglucosamine 53.1 1.1E+02 0.0036 29.9 11.7 100 24-141 231-333 (376)
185 2vws_A YFAU, 2-keto-3-deoxy su 53.1 1.4E+02 0.0047 28.9 12.3 97 39-139 9-112 (267)
186 1rzu_A Glycogen synthase 1; gl 53.0 93 0.0032 31.6 11.6 108 23-141 320-439 (485)
187 1ujp_A Tryptophan synthase alp 52.7 18 0.00061 35.7 5.7 56 85-140 80-141 (271)
188 2qzs_A Glycogen synthase; glyc 52.3 75 0.0026 32.3 10.8 108 23-141 321-440 (485)
189 3okp_A GDP-mannose-dependent a 52.0 33 0.0011 33.5 7.7 106 24-141 230-343 (394)
190 3dr5_A Putative O-methyltransf 51.4 22 0.00075 33.3 6.0 66 20-89 78-147 (221)
191 3tr6_A O-methyltransferase; ce 51.0 61 0.0021 29.4 8.9 61 18-78 84-149 (225)
192 1sui_A Caffeoyl-COA O-methyltr 50.5 49 0.0017 31.4 8.4 69 20-90 101-175 (247)
193 2avd_A Catechol-O-methyltransf 50.2 60 0.0021 29.5 8.8 60 19-78 90-154 (229)
194 3qz6_A HPCH/HPAI aldolase; str 50.0 1E+02 0.0035 29.9 10.7 83 55-139 25-110 (261)
195 2xci_A KDO-transferase, 3-deox 49.9 36 0.0012 34.3 7.7 111 23-142 225-346 (374)
196 3nav_A Tryptophan synthase alp 49.8 17 0.00058 35.9 5.0 55 85-139 85-146 (271)
197 1h5y_A HISF; histidine biosynt 49.5 78 0.0027 29.2 9.6 67 56-124 156-226 (253)
198 1yxy_A Putative N-acetylmannos 49.4 67 0.0023 29.9 9.1 85 36-125 121-215 (234)
199 3s5p_A Ribose 5-phosphate isom 49.2 1.5E+02 0.005 27.3 10.8 37 17-53 15-53 (166)
200 3cbg_A O-methyltransferase; cy 48.8 60 0.0021 30.1 8.6 60 19-78 93-157 (232)
201 4fxs_A Inosine-5'-monophosphat 48.8 1.2E+02 0.0042 32.1 12.0 99 23-125 243-363 (496)
202 1vgv_A UDP-N-acetylglucosamine 48.6 81 0.0028 30.8 9.9 42 95-141 300-341 (384)
203 1ep3_A Dihydroorotate dehydrog 48.3 96 0.0033 30.1 10.4 58 85-142 230-293 (311)
204 2w6r_A Imidazole glycerol phos 47.6 66 0.0023 30.5 8.8 70 55-126 31-104 (266)
205 3ovp_A Ribulose-phosphate 3-ep 47.3 32 0.0011 32.8 6.4 56 69-125 134-197 (228)
206 4gmf_A Yersiniabactin biosynth 47.1 27 0.00093 35.8 6.3 104 23-142 7-118 (372)
207 3ceu_A Thiamine phosphate pyro 47.1 27 0.00093 32.5 5.8 68 52-124 94-171 (210)
208 2oo3_A Protein involved in cat 47.0 13 0.00044 37.2 3.7 54 23-77 113-167 (283)
209 2ho3_A Oxidoreductase, GFO/IDH 46.9 2E+02 0.007 27.8 12.6 105 24-141 2-111 (325)
210 3l9w_A Glutathione-regulated p 46.8 26 0.00089 36.5 6.2 93 23-124 27-121 (413)
211 3bul_A Methionine synthase; tr 46.2 79 0.0027 34.6 10.0 101 23-125 98-211 (579)
212 1rd5_A Tryptophan synthase alp 46.0 43 0.0015 32.1 7.2 42 84-125 189-230 (262)
213 1rd5_A Tryptophan synthase alp 45.8 28 0.00095 33.5 5.9 55 84-139 82-139 (262)
214 1ka9_F Imidazole glycerol phos 45.7 95 0.0033 29.1 9.6 69 55-125 32-104 (252)
215 3qhp_A Type 1 capsular polysac 45.7 84 0.0029 26.6 8.5 105 23-141 32-139 (166)
216 3rc1_A Sugar 3-ketoreductase; 45.6 2.4E+02 0.0081 27.9 13.8 106 23-142 27-139 (350)
217 3o07_A Pyridoxine biosynthesis 45.1 61 0.0021 32.4 8.1 60 84-143 186-252 (291)
218 1zh8_A Oxidoreductase; TM0312, 44.6 2.1E+02 0.0073 28.1 12.4 107 22-141 17-131 (340)
219 1h5y_A HISF; histidine biosynt 43.8 89 0.003 28.8 9.0 69 54-124 33-105 (253)
220 3l4e_A Uncharacterized peptida 43.4 95 0.0033 29.0 9.0 62 23-92 27-98 (206)
221 3u3x_A Oxidoreductase; structu 43.2 1.8E+02 0.0061 29.0 11.7 106 23-141 26-137 (361)
222 2y88_A Phosphoribosyl isomeras 43.2 88 0.003 29.1 8.9 77 56-134 151-240 (244)
223 3cea_A MYO-inositol 2-dehydrog 42.4 1.7E+02 0.0059 28.5 11.3 105 23-139 8-118 (346)
224 1qo2_A Molecule: N-((5-phospho 42.2 1E+02 0.0034 28.9 9.1 78 55-135 145-239 (241)
225 1dxe_A 2-dehydro-3-deoxy-galac 42.1 1.9E+02 0.0065 27.7 11.2 98 39-138 10-112 (256)
226 2r60_A Glycosyl transferase, g 41.7 1.4E+02 0.0046 30.6 10.8 107 24-141 295-423 (499)
227 1vrd_A Inosine-5'-monophosphat 41.5 1.9E+02 0.0063 30.4 12.0 99 23-124 249-368 (494)
228 1qop_A Tryptophan synthase alp 41.0 1E+02 0.0036 29.7 9.2 41 85-125 194-234 (268)
229 1qdl_B Protein (anthranilate s 40.9 16 0.00055 33.5 3.1 50 24-75 1-51 (195)
230 2fli_A Ribulose-phosphate 3-ep 40.7 23 0.00078 32.8 4.2 55 69-124 131-197 (220)
231 3ezy_A Dehydrogenase; structur 40.2 2.3E+02 0.0078 27.8 11.8 106 24-142 3-114 (344)
232 3tdn_A FLR symmetric alpha-bet 40.2 80 0.0027 29.8 8.1 69 55-125 36-108 (247)
233 2x6q_A Trehalose-synthase TRET 40.2 2.2E+02 0.0074 28.1 11.7 106 23-141 262-378 (416)
234 4e5v_A Putative THUA-like prot 39.6 32 0.0011 34.0 5.2 77 23-104 4-94 (281)
235 1h1y_A D-ribulose-5-phosphate 39.0 33 0.0011 32.3 5.1 82 43-125 109-201 (228)
236 2xxa_A Signal recognition part 38.9 53 0.0018 34.4 7.1 53 23-77 129-191 (433)
237 3kts_A Glycerol uptake operon 38.8 37 0.0013 31.9 5.3 62 57-124 117-178 (192)
238 2qfm_A Spermine synthase; sper 38.6 44 0.0015 34.4 6.3 56 24-79 212-277 (364)
239 3ic5_A Putative saccharopine d 38.6 92 0.0031 24.7 7.2 90 23-122 5-97 (118)
240 1z0s_A Probable inorganic poly 38.6 24 0.00084 35.0 4.2 93 23-141 29-122 (278)
241 3u81_A Catechol O-methyltransf 38.3 42 0.0014 30.7 5.6 61 20-80 80-145 (221)
242 1tqj_A Ribulose-phosphate 3-ep 38.2 47 0.0016 31.5 6.0 84 55-141 18-110 (230)
243 1thf_D HISF protein; thermophI 38.0 1.6E+02 0.0056 27.4 9.9 69 55-125 31-103 (253)
244 3mz0_A Inositol 2-dehydrogenas 37.7 2.8E+02 0.0094 27.2 12.0 106 24-142 3-116 (344)
245 3llv_A Exopolyphosphatase-rela 37.1 89 0.0031 26.2 7.2 53 69-124 70-122 (141)
246 3tfw_A Putative O-methyltransf 37.0 61 0.0021 30.5 6.7 71 18-91 83-156 (248)
247 1vzw_A Phosphoribosyl isomeras 36.6 71 0.0024 29.9 7.0 79 55-135 147-238 (244)
248 3iwp_A Copper homeostasis prot 36.5 1.7E+02 0.0057 29.2 9.8 90 47-137 39-149 (287)
249 1qv9_A F420-dependent methylen 36.5 64 0.0022 31.6 6.5 60 64-126 61-120 (283)
250 1g5t_A COB(I)alamin adenosyltr 36.4 65 0.0022 30.2 6.5 58 57-114 106-170 (196)
251 3ajx_A 3-hexulose-6-phosphate 36.2 31 0.001 31.6 4.2 83 55-139 11-99 (207)
252 2jjm_A Glycosyl transferase, g 36.0 55 0.0019 32.3 6.4 65 70-141 285-349 (394)
253 3tsa_A SPNG, NDP-rhamnosyltran 35.8 1.2E+02 0.004 29.8 8.8 73 23-103 1-142 (391)
254 3oy2_A Glycosyltransferase B73 35.7 1.3E+02 0.0043 29.8 9.1 107 23-141 215-354 (413)
255 2glx_A 1,5-anhydro-D-fructose 35.5 2.3E+02 0.0079 27.4 10.9 104 24-141 1-111 (332)
256 2fhp_A Methylase, putative; al 35.4 2.1E+02 0.0072 24.5 9.6 68 24-91 68-138 (187)
257 1tqx_A D-ribulose-5-phosphate 35.3 57 0.002 31.1 6.1 82 42-125 109-201 (227)
258 3s83_A Ggdef family protein; s 34.9 2E+02 0.007 26.8 10.1 97 39-138 144-254 (259)
259 2hnk_A SAM-dependent O-methylt 34.8 1.6E+02 0.0053 27.1 9.1 61 20-80 82-158 (239)
260 1ypf_A GMP reductase; GUAC, pu 34.5 3.5E+02 0.012 26.8 14.0 90 31-124 132-238 (336)
261 3ec7_A Putative dehydrogenase; 34.4 1.1E+02 0.0038 30.5 8.5 107 23-142 23-137 (357)
262 3paj_A Nicotinate-nucleotide p 34.2 1.5E+02 0.0051 30.0 9.2 92 25-123 204-301 (320)
263 3iwt_A 178AA long hypothetical 34.2 96 0.0033 27.9 7.2 59 18-76 10-88 (178)
264 1ydw_A AX110P-like protein; st 34.2 3.4E+02 0.012 26.7 12.1 109 23-141 6-120 (362)
265 3euw_A MYO-inositol dehydrogen 34.1 1.8E+02 0.0061 28.6 9.8 106 23-141 4-114 (344)
266 1izc_A Macrophomate synthase i 34.0 2.2E+02 0.0076 28.7 10.6 81 56-139 52-139 (339)
267 3ulq_B Transcriptional regulat 33.9 17 0.0006 29.5 1.9 40 221-261 37-76 (90)
268 3ot5_A UDP-N-acetylglucosamine 33.7 2.7E+02 0.0091 28.2 11.4 43 94-141 318-360 (403)
269 1ws6_A Methyltransferase; stru 33.7 1.4E+02 0.0049 25.2 8.1 67 24-91 64-131 (171)
270 2qai_A V-type ATP synthase sub 33.7 2.1E+02 0.0073 24.2 8.8 70 24-106 1-79 (111)
271 4gud_A Imidazole glycerol phos 33.4 52 0.0018 30.1 5.4 43 25-75 4-46 (211)
272 3ajd_A Putative methyltransfer 33.1 1.7E+02 0.0059 27.8 9.3 55 23-77 108-164 (274)
273 3f4w_A Putative hexulose 6 pho 33.0 45 0.0015 30.6 4.8 82 56-139 12-99 (211)
274 2iuy_A Avigt4, glycosyltransfe 32.9 55 0.0019 31.5 5.7 105 24-140 189-306 (342)
275 3axs_A Probable N(2),N(2)-dime 32.6 1.9E+02 0.0066 29.7 10.1 77 24-105 78-159 (392)
276 1i1q_B Anthranilate synthase c 32.4 48 0.0017 30.1 4.9 51 24-75 1-54 (192)
277 1p0k_A Isopentenyl-diphosphate 32.0 3.8E+02 0.013 26.5 12.0 88 35-125 166-280 (349)
278 2px0_A Flagellar biosynthesis 31.8 62 0.0021 31.9 5.9 58 23-83 134-194 (296)
279 4hkt_A Inositol 2-dehydrogenas 31.7 2E+02 0.007 27.9 9.8 104 24-142 4-113 (331)
280 1rpx_A Protein (ribulose-phosp 31.7 31 0.0011 32.3 3.5 56 69-125 140-207 (230)
281 3q2i_A Dehydrogenase; rossmann 31.5 2.6E+02 0.0089 27.5 10.6 106 23-142 13-125 (354)
282 3l4b_C TRKA K+ channel protien 31.0 1.3E+02 0.0044 27.4 7.7 93 23-124 23-118 (218)
283 3dqp_A Oxidoreductase YLBE; al 30.9 1.7E+02 0.0057 26.3 8.4 30 24-53 1-30 (219)
284 1qpo_A Quinolinate acid phosph 30.8 1.2E+02 0.0041 30.0 7.7 94 26-124 168-268 (284)
285 3ffs_A Inosine-5-monophosphate 30.6 1.1E+02 0.0037 31.9 7.7 65 57-124 146-211 (400)
286 2f6u_A GGGPS, (S)-3-O-geranylg 30.5 49 0.0017 31.9 4.8 58 57-124 23-83 (234)
287 3p9n_A Possible methyltransfer 30.4 1.8E+02 0.0062 25.4 8.4 54 24-79 68-123 (189)
288 4gqa_A NAD binding oxidoreduct 30.3 4.1E+02 0.014 26.6 12.1 108 22-142 25-146 (412)
289 2fqx_A Membrane lipoprotein TM 30.1 2.1E+02 0.0071 27.7 9.5 65 36-105 26-95 (318)
290 1ujp_A Tryptophan synthase alp 30.1 1.7E+02 0.0057 28.5 8.7 39 85-125 191-229 (271)
291 2hfv_A Hypothetical protein RP 30.1 1.6E+02 0.0056 24.6 7.2 68 23-120 22-90 (97)
292 1viz_A PCRB protein homolog; s 30.0 75 0.0026 30.7 6.0 54 57-124 23-83 (240)
293 1f0k_A MURG, UDP-N-acetylgluco 30.0 1.2E+02 0.0041 29.2 7.7 53 84-139 264-322 (364)
294 1je8_A Nitrate/nitrite respons 29.8 38 0.0013 26.6 3.2 50 221-275 29-78 (82)
295 2dul_A N(2),N(2)-dimethylguano 29.8 1.9E+02 0.0065 29.5 9.4 76 24-105 72-165 (378)
296 2pyy_A Ionotropic glutamate re 29.8 1.3E+02 0.0046 26.1 7.4 49 22-77 111-159 (228)
297 3vk5_A MOEO5; TIM barrel, tran 29.6 81 0.0028 31.5 6.2 57 69-126 199-257 (286)
298 2al1_A Enolase 1, 2-phospho-D- 29.6 83 0.0028 33.0 6.7 106 30-138 219-361 (436)
299 3jy6_A Transcriptional regulat 29.5 2E+02 0.0068 26.6 8.9 64 36-106 26-95 (276)
300 3db2_A Putative NADPH-dependen 29.4 3.5E+02 0.012 26.5 11.2 106 23-142 5-116 (354)
301 2yw3_A 4-hydroxy-2-oxoglutarat 29.3 3E+02 0.01 25.4 9.9 89 46-142 103-200 (207)
302 1wa3_A 2-keto-3-deoxy-6-phosph 29.2 91 0.0031 28.3 6.3 64 55-124 113-177 (205)
303 3moi_A Probable dehydrogenase; 29.1 1.2E+02 0.0042 30.5 7.8 106 23-142 2-114 (387)
304 3tqv_A Nicotinate-nucleotide p 28.7 2.1E+02 0.0071 28.5 9.1 66 51-123 203-268 (287)
305 1wl8_A GMP synthase [glutamine 28.7 52 0.0018 29.7 4.4 77 24-104 1-80 (189)
306 2akz_A Gamma enolase, neural; 28.5 83 0.0028 33.1 6.5 106 30-138 217-358 (439)
307 3c0k_A UPF0064 protein YCCW; P 28.5 1.6E+02 0.0055 29.8 8.6 54 24-77 244-301 (396)
308 3l0g_A Nicotinate-nucleotide p 28.5 1.3E+02 0.0044 30.2 7.5 67 50-123 211-277 (300)
309 1gox_A (S)-2-hydroxy-acid oxid 28.4 2.1E+02 0.0071 29.0 9.3 86 37-125 215-309 (370)
310 3czc_A RMPB; alpha/beta sandwi 28.4 2.5E+02 0.0086 23.2 9.6 80 23-114 18-104 (110)
311 4fzr_A SSFS6; structural genom 28.3 1.4E+02 0.0049 29.4 8.0 79 17-103 9-151 (398)
312 3c6k_A Spermine synthase; sper 28.1 1.1E+02 0.0039 31.6 7.2 57 24-80 229-295 (381)
313 3gnn_A Nicotinate-nucleotide p 28.0 2.3E+02 0.0079 28.3 9.3 65 51-122 214-278 (298)
314 3abi_A Putative uncharacterize 27.9 91 0.0031 31.2 6.5 90 22-124 15-106 (365)
315 3gjy_A Spermidine synthase; AP 27.4 62 0.0021 32.6 5.0 59 20-81 111-171 (317)
316 1jvn_A Glutamine, bifunctional 27.3 2.9E+02 0.0098 29.7 10.6 79 56-136 454-543 (555)
317 1wxx_A TT1595, hypothetical pr 27.1 1.7E+02 0.0059 29.4 8.5 54 24-77 232-287 (382)
318 3nav_A Tryptophan synthase alp 26.9 2.2E+02 0.0075 27.8 8.9 96 27-125 130-237 (271)
319 3h2s_A Putative NADH-flavin re 26.8 82 0.0028 28.3 5.4 56 24-81 1-56 (224)
320 2i2c_A Probable inorganic poly 26.7 99 0.0034 29.9 6.3 86 24-142 1-93 (272)
321 3w01_A Heptaprenylglyceryl pho 26.7 54 0.0018 31.8 4.2 59 58-125 27-87 (235)
322 2nvw_A Galactose/lactose metab 26.6 3E+02 0.01 28.8 10.4 107 23-141 39-163 (479)
323 3r3h_A O-methyltransferase, SA 26.5 53 0.0018 31.0 4.2 59 20-78 82-145 (242)
324 2qjg_A Putative aldolase MJ040 26.5 2.3E+02 0.008 26.8 8.9 69 69-141 179-258 (273)
325 2ixa_A Alpha-N-acetylgalactosa 26.4 2.4E+02 0.0083 28.9 9.6 114 23-142 20-141 (444)
326 3k9c_A Transcriptional regulat 26.3 1.2E+02 0.0039 28.6 6.6 64 36-106 30-98 (289)
327 2iuy_A Avigt4, glycosyltransfe 26.2 1.4E+02 0.0049 28.5 7.4 56 23-80 3-95 (342)
328 3ohs_X Trans-1,2-dihydrobenzen 26.2 4.2E+02 0.014 25.7 11.0 106 24-142 3-116 (334)
329 3tha_A Tryptophan synthase alp 26.1 46 0.0016 32.5 3.7 56 85-143 79-140 (252)
330 3gdo_A Uncharacterized oxidore 26.1 4.5E+02 0.015 25.9 11.3 105 23-142 5-115 (358)
331 3bt7_A TRNA (uracil-5-)-methyl 26.1 1.7E+02 0.0057 29.4 8.1 77 24-103 236-326 (369)
332 2p10_A MLL9387 protein; putati 26.1 4.9E+02 0.017 25.8 11.2 79 45-126 161-260 (286)
333 1xea_A Oxidoreductase, GFO/IDH 26.0 1.8E+02 0.0062 28.2 8.2 104 24-141 3-112 (323)
334 3o9z_A Lipopolysaccaride biosy 26.0 89 0.003 30.7 5.9 110 23-142 3-122 (312)
335 4e38_A Keto-hydroxyglutarate-a 25.7 1.5E+02 0.0051 28.5 7.2 93 41-137 29-124 (232)
336 2b78_A Hypothetical protein SM 25.7 1.6E+02 0.0053 29.9 7.8 54 24-77 236-293 (385)
337 1lst_A Lysine, arginine, ornit 25.6 1.5E+02 0.0051 26.2 7.0 52 23-77 111-162 (239)
338 1x1o_A Nicotinate-nucleotide p 25.5 3.5E+02 0.012 26.6 10.1 92 26-124 169-267 (286)
339 1qap_A Quinolinic acid phospho 25.5 4.5E+02 0.016 25.9 11.0 90 26-123 182-278 (296)
340 3vnd_A TSA, tryptophan synthas 25.4 2.3E+02 0.0079 27.6 8.7 102 23-126 123-236 (267)
341 2fpo_A Methylase YHHF; structu 25.4 2.5E+02 0.0086 25.1 8.5 65 24-91 78-144 (202)
342 2yxd_A Probable cobalt-precorr 25.3 3.1E+02 0.01 23.1 10.4 74 22-103 56-131 (183)
343 3kux_A Putative oxidoreductase 25.2 4.3E+02 0.015 25.8 10.9 106 22-142 6-117 (352)
344 3e9m_A Oxidoreductase, GFO/IDH 25.0 1.5E+02 0.0053 29.0 7.5 107 23-142 5-117 (330)
345 2gjl_A Hypothetical protein PA 24.8 4.4E+02 0.015 25.8 10.9 62 55-125 84-145 (328)
346 3snr_A Extracellular ligand-bi 24.7 1.8E+02 0.0062 27.7 7.8 49 57-109 180-229 (362)
347 1req_B Methylmalonyl-COA mutas 24.7 1.1E+02 0.0038 33.9 6.8 97 37-138 528-631 (637)
348 2as0_A Hypothetical protein PH 24.6 2.1E+02 0.0071 28.9 8.6 54 24-77 241-297 (396)
349 3e18_A Oxidoreductase; dehydro 24.4 3.5E+02 0.012 26.8 10.1 105 23-142 5-115 (359)
350 3td9_A Branched chain amino ac 24.4 3.8E+02 0.013 25.7 10.2 83 24-110 150-244 (366)
351 3inp_A D-ribulose-phosphate 3- 24.3 1.4E+02 0.0048 28.8 6.8 83 55-139 41-130 (246)
352 3kke_A LACI family transcripti 24.2 1.7E+02 0.0058 27.6 7.4 67 34-106 32-104 (303)
353 3cvo_A Methyltransferase-like 24.2 75 0.0026 29.8 4.7 112 23-139 51-199 (202)
354 3g8r_A Probable spore coat pol 24.0 2.6E+02 0.0087 28.6 8.9 78 34-116 78-155 (350)
355 2igt_A SAM dependent methyltra 23.7 1.4E+02 0.0047 29.8 6.9 55 23-77 175-233 (332)
356 3pfn_A NAD kinase; structural 23.6 1.3E+02 0.0046 30.8 6.8 100 24-142 39-164 (365)
357 3oqb_A Oxidoreductase; structu 23.6 3.1E+02 0.011 27.2 9.6 48 95-142 82-133 (383)
358 3oa2_A WBPB; oxidoreductase, s 23.5 99 0.0034 30.4 5.7 111 23-142 3-123 (318)
359 2rdx_A Mandelate racemase/muco 23.3 1.4E+02 0.0047 30.2 6.8 69 55-128 201-270 (379)
360 3e82_A Putative oxidoreductase 23.3 4.9E+02 0.017 25.7 11.0 105 23-142 7-117 (364)
361 3sho_A Transcriptional regulat 23.3 3.4E+02 0.012 23.7 8.9 84 25-111 41-129 (187)
362 3lab_A Putative KDPG (2-keto-3 23.1 1.6E+02 0.0055 28.0 6.8 63 70-136 39-102 (217)
363 3m2t_A Probable dehydrogenase; 23.1 2.3E+02 0.008 28.1 8.5 108 23-142 5-118 (359)
364 1id1_A Putative potassium chan 23.1 2.4E+02 0.0081 24.0 7.5 94 23-123 26-123 (153)
365 3sgz_A Hydroxyacid oxidase 2; 22.9 3.4E+02 0.012 27.6 9.7 86 37-125 207-301 (352)
366 3hm2_A Precorrin-6Y C5,15-meth 22.9 2.4E+02 0.0081 23.9 7.6 56 23-81 49-106 (178)
367 2hqb_A Transcriptional activat 22.9 2.1E+02 0.0073 27.3 7.9 66 35-105 25-96 (296)
368 1wa3_A 2-keto-3-deoxy-6-phosph 22.9 3.2E+02 0.011 24.5 8.8 80 54-137 19-101 (205)
369 2i7c_A Spermidine synthase; tr 22.8 1.6E+02 0.0053 28.4 6.9 56 22-80 101-162 (283)
370 3gr7_A NADPH dehydrogenase; fl 22.7 4.4E+02 0.015 26.3 10.4 39 85-123 266-304 (340)
371 3s28_A Sucrose synthase 1; gly 22.7 4.2E+02 0.014 30.0 11.2 108 24-141 604-729 (816)
372 3khj_A Inosine-5-monophosphate 22.6 3.5E+02 0.012 27.4 9.7 65 57-124 107-172 (361)
373 3btv_A Galactose/lactose metab 22.5 2.4E+02 0.0082 29.0 8.6 108 23-141 20-144 (438)
374 2rir_A Dipicolinate synthase, 22.5 63 0.0022 31.5 4.0 98 21-124 5-125 (300)
375 3dzc_A UDP-N-acetylglucosamine 22.4 2E+02 0.0069 28.9 7.9 42 95-141 325-366 (396)
376 3ntv_A MW1564 protein; rossman 22.4 1.5E+02 0.0052 27.2 6.5 64 23-91 95-162 (232)
377 3c85_A Putative glutathione-re 22.3 3.8E+02 0.013 23.2 9.0 40 23-63 39-79 (183)
378 2kpo_A Rossmann 2X2 fold prote 22.3 2.4E+02 0.0081 22.9 6.5 44 22-65 50-95 (110)
379 3oti_A CALG3; calicheamicin, T 22.2 2.5E+02 0.0086 27.6 8.5 33 23-55 20-56 (398)
380 1tqj_A Ribulose-phosphate 3-ep 22.2 61 0.0021 30.7 3.7 80 42-125 107-201 (230)
381 2khz_A C-MYC-responsive protei 22.0 2.6E+02 0.009 24.9 7.8 114 22-143 10-152 (165)
382 4fxs_A Inosine-5'-monophosphat 21.9 1.6E+02 0.0053 31.4 7.1 55 69-124 243-299 (496)
383 1iy9_A Spermidine synthase; ro 21.8 1.1E+02 0.0036 29.6 5.4 56 22-80 98-159 (275)
384 2j9r_A Thymidine kinase; TK1, 21.6 53 0.0018 31.3 3.1 51 69-134 101-153 (214)
385 3r2g_A Inosine 5'-monophosphat 21.5 2.2E+02 0.0076 29.1 7.9 64 58-124 103-168 (361)
386 1vlj_A NADH-dependent butanol 21.4 2.4E+02 0.0084 28.8 8.4 63 24-91 44-120 (407)
387 3c57_A Two component transcrip 21.3 43 0.0015 27.1 2.1 51 221-276 35-85 (95)
388 3qk7_A Transcriptional regulat 21.3 2.3E+02 0.008 26.5 7.7 65 35-105 28-97 (294)
389 3brq_A HTH-type transcriptiona 21.1 3.4E+02 0.012 24.9 8.8 67 34-105 38-110 (296)
390 1tlt_A Putative oxidoreductase 21.1 1.7E+02 0.0057 28.4 6.7 103 23-141 5-114 (319)
391 2r6o_A Putative diguanylate cy 21.1 2.4E+02 0.0081 27.4 7.9 95 41-138 170-278 (294)
392 3sc6_A DTDP-4-dehydrorhamnose 21.0 1.8E+02 0.0062 27.1 6.9 53 24-78 6-65 (287)
393 3bfj_A 1,3-propanediol oxidore 21.0 1.7E+02 0.0059 29.6 7.0 63 24-91 34-111 (387)
394 2l82_A Designed protein OR32; 20.9 4E+02 0.014 22.9 11.7 15 128-142 137-151 (162)
395 3inp_A D-ribulose-phosphate 3- 20.9 1.2E+02 0.004 29.4 5.5 56 69-125 156-223 (246)
396 3uuw_A Putative oxidoreductase 20.9 5E+02 0.017 24.7 10.2 104 23-142 6-116 (308)
397 3c3p_A Methyltransferase; NP_9 20.9 1E+02 0.0035 27.7 4.8 67 19-91 77-146 (210)
398 2nv1_A Pyridoxal biosynthesis 20.9 1.3E+02 0.0043 29.6 5.8 58 84-141 195-259 (305)
399 2b8t_A Thymidine kinase; deoxy 20.9 30 0.001 33.0 1.2 80 23-105 40-124 (223)
400 3tqp_A Enolase; energy metabol 20.9 1.1E+02 0.0038 32.0 5.6 83 55-138 264-353 (428)
401 2agk_A 1-(5-phosphoribosyl)-5- 20.6 1E+02 0.0035 29.9 4.9 78 58-137 162-257 (260)
402 2kpo_A Rossmann 2X2 fold prote 20.5 2E+02 0.0069 23.4 5.8 42 25-66 4-45 (110)
403 4af0_A Inosine-5'-monophosphat 20.5 7.9E+02 0.027 26.7 12.2 100 23-125 293-413 (556)
404 3cni_A Putative ABC type-2 tra 20.5 1.8E+02 0.0061 25.2 6.2 53 20-75 7-61 (156)
405 3d4o_A Dipicolinate synthase s 20.5 1.3E+02 0.0044 29.1 5.8 93 22-122 4-121 (293)
406 1o2d_A Alcohol dehydrogenase, 20.4 1.3E+02 0.0046 30.4 6.0 63 24-91 41-117 (371)
407 3st7_A Capsular polysaccharide 20.3 3.2E+02 0.011 26.6 8.8 78 24-105 1-95 (369)
408 3k9g_A PF-32 protein; ssgcid, 20.3 1.3E+02 0.0046 28.0 5.7 14 22-35 54-67 (267)
409 3bbl_A Regulatory protein of L 20.2 3.1E+02 0.01 25.5 8.3 66 34-105 25-96 (287)
410 3e8x_A Putative NAD-dependent 20.2 1.2E+02 0.004 27.7 5.1 55 22-78 20-75 (236)
411 2gl5_A Putative dehydratase pr 20.1 1.7E+02 0.0057 29.9 6.8 78 55-134 230-308 (410)
412 3qja_A IGPS, indole-3-glycerol 20.1 2.4E+02 0.0083 27.4 7.6 56 85-140 102-159 (272)
413 2uva_G Fatty acid synthase bet 20.1 1.7E+02 0.0057 37.0 7.7 85 39-125 684-795 (2060)
414 2l69_A Rossmann 2X3 fold prote 20.0 3.3E+02 0.011 22.8 7.1 18 32-49 60-77 (134)
415 3lkv_A Uncharacterized conserv 20.0 1E+02 0.0035 29.8 4.9 82 20-101 137-225 (302)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=6.5e-25 Score=198.91 Aligned_cols=119 Identities=30% Similarity=0.562 Sum_probs=110.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDL 97 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~i 97 (529)
.++|||||||++.++..++.+|+..||+ |..|.++.+|++.+++.. |||||+|+.||+|||+++++.+|. .+++
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999999997 668999999999998875 999999999999999999998874 3679
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|||++|++.+.+...+++++||+|||.|||+.++|..+++++++|
T Consensus 89 pvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 89 PVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988754
No 2
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.87 E-value=4.3e-21 Score=165.69 Aligned_cols=117 Identities=32% Similarity=0.503 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
.|||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++....+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998764 9999999999999999999988877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+..+.....++++.||++||.||++.++|..++++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988764
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.87 E-value=4.9e-21 Score=166.06 Aligned_cols=116 Identities=28% Similarity=0.400 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipVI 100 (529)
.+||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999997654 9999999999999999999988643 679999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
++|+..+.+...++++.||++||.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998864
No 4
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.86 E-value=1.9e-23 Score=186.77 Aligned_cols=113 Identities=24% Similarity=0.386 Sum_probs=101.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
..+|||||||++.++..++.+|+..||+|+ +|.++.+|++++++.+ ||+||+|++||+|||+++++.++. .++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCEE
Confidence 358999999999999999999999999986 7899999999998865 999999999999999999998875 579999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
++|++.+.+. +.++|+.+||.|||+.++|..+++++.
T Consensus 84 ~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 84 FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 9999987553 347899999999999999999987664
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.86 E-value=1.3e-20 Score=166.42 Aligned_cols=120 Identities=35% Similarity=0.527 Sum_probs=110.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipV 99 (529)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 378999999999999999999999999999999999999998765 999999999999999999998864 457999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.....+++++||++||.||++.++|..++++++++..
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999987654
No 6
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.85 E-value=2.6e-20 Score=163.87 Aligned_cols=120 Identities=21% Similarity=0.436 Sum_probs=107.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhc---CCCceEEEEecCCCCCCHHHHHHHHhc--CCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLREN---RNNFDLVISDVYMPDMDGFKLLELVGL--EMD 96 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~sa~eALe~L~e~---~~~pDLVIlDi~MPdmdGleLL~~Ir~--~~~ 96 (529)
.+|||||||++..+..++.+|+..||. |..+.++.+|++.++.. ...||+||+|+.||+++|+++++.++. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 478999999999999999999988875 77899999999998761 124999999999999999999998864 457
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|||++|+..+.+...++++.||++||.||++.++|..++++++..
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999988654
No 7
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.84 E-value=5.1e-20 Score=160.60 Aligned_cols=119 Identities=28% Similarity=0.497 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ip 98 (529)
++|||||||++..+..++.+|++.||. +..+.++.+|++.+.... .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 589999999999999999999999996 889999999999887652 5999999999999999999998874 35799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
||++|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998754
No 8
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.1e-19 Score=162.19 Aligned_cols=119 Identities=29% Similarity=0.419 Sum_probs=105.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-----CCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-----EMD 96 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-----~~~ 96 (529)
..+|||||||++..+..++.+|+..||.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 4689999999999999999999999999999999999999998764 999999999999999999997752 356
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|||++|+..+.+...++++.||++||.||++.++|..++..+...
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999987643
No 9
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.83 E-value=2.7e-19 Score=152.82 Aligned_cols=118 Identities=30% Similarity=0.420 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
++||||||++..+..++..|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998764 99999999999999999999876 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.....++++.||++|+.||++.++|..++++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987653
No 10
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.83 E-value=3.2e-19 Score=152.90 Aligned_cols=117 Identities=22% Similarity=0.432 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
.+||||||++..+..++.+|+..||.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998754 9999999999999999999988777789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+..+.....++++.||++|+.||++.++|..++++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 11
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.83 E-value=2.2e-19 Score=161.84 Aligned_cols=120 Identities=29% Similarity=0.476 Sum_probs=112.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipV 99 (529)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 58999999999999999999999999999999999999999765 49999999999999999999988753 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.+...++++.||++||.||++.++|..++++++++.+
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 12
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.82 E-value=2.1e-19 Score=152.92 Aligned_cols=117 Identities=27% Similarity=0.466 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
.+||||||++..+..++..|+..||++..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 48999999999999999999999999999999999999998764 9999999999999999999988766789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+..+.....++++.||++|+.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988764
No 13
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.82 E-value=2.9e-20 Score=173.21 Aligned_cols=119 Identities=21% Similarity=0.377 Sum_probs=110.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
+++||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999997654 99999999999999999999876 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998877653
No 14
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.82 E-value=3.5e-19 Score=154.11 Aligned_cols=118 Identities=22% Similarity=0.403 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIv 101 (529)
+.+||||||++..+..++.+|+..||.+..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 36899999999999999999999999999999999999998765 4999999999999999999998864 57899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
No 15
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=2.5e-19 Score=156.76 Aligned_cols=119 Identities=28% Similarity=0.444 Sum_probs=110.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
.++||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 368999999999999999999999999999999999999998764 99999999999999999999876 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988754
No 16
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.82 E-value=1.8e-19 Score=170.87 Aligned_cols=120 Identities=19% Similarity=0.313 Sum_probs=110.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-QYEV-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-gy~V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipV 99 (529)
.++||||||++..+..++.+|+.. +|.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 82 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGRI 82 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 479999999999999999999876 5887 58899999999998765 99999999999999999999886 4578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 83 i~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 83 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp EEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 999999999999999999999999999999999999999988754
No 17
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.82 E-value=2.6e-19 Score=154.18 Aligned_cols=117 Identities=22% Similarity=0.473 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvl 102 (529)
.+||||||++..+..++.+|+..||++..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999999999999999999999998764 999999999999999999998864 678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999987643
No 18
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=3.4e-19 Score=157.27 Aligned_cols=119 Identities=24% Similarity=0.466 Sum_probs=111.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++....+|||++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 479999999999999999999988999999999999999998764 999999999999999999998876568999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988754
No 19
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.82 E-value=4.6e-19 Score=152.13 Aligned_cols=117 Identities=22% Similarity=0.377 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999988999999999999999998764 9999999999999999999988755789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+..+.....++++.||++|+.||++.++|..++++++++
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 20
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.81 E-value=3.6e-19 Score=151.70 Aligned_cols=118 Identities=29% Similarity=0.392 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
++||||||++..+..++.+|+..||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 68999999999999999999999999999999999999887764 9999999999999999999988877789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+..+.....++++.||++|+.||++.++|..++++++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988753
No 21
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=6.1e-19 Score=155.53 Aligned_cols=122 Identities=29% Similarity=0.497 Sum_probs=112.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
.+|||||||++..+..++.+|+..||+|..+.++.+|++.+......||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4799999999999999999999999999999999999999985333599999999999999999999775 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+.+...++++.||++||.||++.++|..++++++++++
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK 125 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988654
No 22
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=6.1e-19 Score=152.37 Aligned_cols=119 Identities=29% Similarity=0.525 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy-~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ip 98 (529)
.++||||||++..+..++.+|+..|| .+..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ 81 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSALP 81 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTCC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCc
Confidence 58999999999999999999999899 688999999999998764 4999999999999999999998874 35789
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
||++|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 82 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 82 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987653
No 23
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.81 E-value=4.4e-19 Score=151.57 Aligned_cols=116 Identities=25% Similarity=0.452 Sum_probs=106.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
+++||||||++..+..++..|+..||+ +..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 368999999999999999999999999 458899999999998765 99999999999999999999875 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
++|+..+.....++++.||++|+.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
No 24
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.81 E-value=7.6e-19 Score=153.63 Aligned_cols=122 Identities=22% Similarity=0.330 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--CCCCcE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPV 99 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~--~~~ipV 99 (529)
..++||||||++..+..++.+|+..||+|..+.++.+|+..+.... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 4589999999999999999999999999999999999999998753 4999999999999999999998875 478999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.+...++++.||++||.||++.++|..+++++..+..
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 999999999999999999999999999999999999999987643
No 25
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.81 E-value=3.3e-19 Score=152.93 Aligned_cols=117 Identities=25% Similarity=0.462 Sum_probs=102.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipVI 100 (529)
.+||||||++..+..++.+|+..||++..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 58999999999999999999999999999999999999998764 999999999999999999998864 3578999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999999888889999999999999999999999999988754
No 26
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.81 E-value=1.1e-19 Score=160.10 Aligned_cols=120 Identities=17% Similarity=0.327 Sum_probs=111.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHh-cCCCceEEEEecCCC-CCCHHHHHHHHhc---CCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMP-DMDGFKLLELVGL---EMD 96 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~~a~sa~eALe~L~e-~~~~pDLVIlDi~MP-dmdGleLL~~Ir~---~~~ 96 (529)
.++||||||++..+..++.+|+. .||+|..+.++.+|++.+.+ . .|||||+|+.|| +++|+++++.++. .+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~--~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~ 81 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLD--SITLIIMDIAFPVEKEGLEVLSAIRNNSRTAN 81 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCC--CCSEEEECSCSSSHHHHHHHHHHHHHSGGGTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCC--CCcEEEEeCCCCCCCcHHHHHHHHHhCcccCC
Confidence 47999999999999999999999 99999999999999999976 5 499999999999 9999999998864 678
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 82 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 82 TPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp CCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987654
No 27
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.81 E-value=6e-19 Score=158.21 Aligned_cols=122 Identities=30% Similarity=0.426 Sum_probs=113.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcE
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipV 99 (529)
...++||||||++..+..++.+|+..||.|..+.++.+|++.+.+.. |||||+|+.||+++|+++++.++ ..+.+||
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCeE
Confidence 34689999999999999999999999999999999999999998765 99999999999999999999875 4678999
Q ss_pred EEEecCCCHHHHHHHHhcC-CcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHG-ACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~G-A~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.+...++++.| |++||.||++.++|..++++++++.+
T Consensus 90 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 90 ILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 99999999999999999999987643
No 28
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.81 E-value=6.2e-19 Score=157.72 Aligned_cols=122 Identities=19% Similarity=0.304 Sum_probs=109.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc-----CCCceEEEEecCCCCCCHHHHHHHHhcC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLREN-----RNNFDLVISDVYMPDMDGFKLLELVGLE 94 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~-----~~~pDLVIlDi~MPdmdGleLL~~Ir~~ 94 (529)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.++..
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 358999999999999999999998777 788999999999998752 1259999999999999999999988753
Q ss_pred ---CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 95 ---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 95 ---~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999987654
No 29
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.81 E-value=1.8e-19 Score=156.91 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=110.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
.+|||||||++..+..++.+|++.||.+. .+.++.+|++.+++.. ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 37999999999999999999999999988 8899999999998765 99999999999999999999876 56789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccCCC
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVDP 147 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~~ 147 (529)
++|+..+.+...++++.||++||.||++.++|..+++++++++...+
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 125 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFP 125 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBCC
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEeC
Confidence 99999999999999999999999999999999999999998766543
No 30
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.81 E-value=1.2e-19 Score=160.44 Aligned_cols=121 Identities=22% Similarity=0.307 Sum_probs=111.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhcCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLL~~Ir~~~~ipVIv 101 (529)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.++..+.+|||+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 47999999999999999999999999999999999999999762 25999999999995 99999999887678999999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+.+...++++.||++||.||++.++|..++++++++.+
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999998888899999999999999999999999999987643
No 31
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.81 E-value=3.5e-19 Score=154.07 Aligned_cols=118 Identities=32% Similarity=0.486 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy-~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ip 98 (529)
.++||||||++..+..++.+|+..|| .+..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 47999999999999999999998899 7888999999999998654 999999999999999999998875 36789
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
||++|+..+.....++++.||++|+.||++.++|..++++++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988764
No 32
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.81 E-value=4.1e-19 Score=154.20 Aligned_cols=120 Identities=28% Similarity=0.460 Sum_probs=103.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
.++|||||||++..+..++.+|+..||.+..+.++.+|++.++... ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3589999999999999999999999999999999999999997654 99999999999999999999876 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCC-CHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~-~~eeL~~~l~~vlr~~ 143 (529)
++|+..+.+...++++.||++||.||+ +.++|..++++++++.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999998654
No 33
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.81 E-value=2.6e-19 Score=157.40 Aligned_cols=121 Identities=21% Similarity=0.327 Sum_probs=111.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipV 99 (529)
.++||||||++..+..++.+|++.||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 489999999999999999999999999999999999999998765 999999999999999999998864 578999
Q ss_pred EEEecCCCHHHHH-HHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccC
Q 009670 100 VMLSAYSDTKLVM-KGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (529)
Q Consensus 100 IvlTa~~d~e~v~-~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~ 145 (529)
|++|+..+..... ++++.||++||.||++.++|..++++++++...
T Consensus 84 i~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 9999998887777 889999999999999999999999999987653
No 34
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.81 E-value=6.3e-19 Score=171.90 Aligned_cols=121 Identities=34% Similarity=0.509 Sum_probs=113.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVI 100 (529)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999998765 999999999999999999998864 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
++|+..+.+...+++++||++||.||++.++|..+++.++++..
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999988643
No 35
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.81 E-value=3.3e-19 Score=169.86 Aligned_cols=122 Identities=25% Similarity=0.396 Sum_probs=107.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhc-----------CCCceEEEEecCCCCCCHHHHH
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQY-EVTVTNRAITALKMLREN-----------RNNFDLVISDVYMPDMDGFKLL 88 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy-~V~~a~sa~eALe~L~e~-----------~~~pDLVIlDi~MPdmdGleLL 88 (529)
..+++||||||++.++..++.+|+..|| .|..+.++.+|++.++.. ...|||||+|+.||+++|++++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 4568999999999999999999999998 899999999999999874 1249999999999999999999
Q ss_pred HHHhc-----CCCCcEEEEecCC-CHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 89 ELVGL-----EMDLPVVMLSAYS-DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 89 ~~Ir~-----~~~ipVIvlTa~~-d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+.++. .+.+|||++|+.. +.+...++++.||++||.||++ +|..+++.++++.+
T Consensus 139 ~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 139 REIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 98864 4789999999998 8888999999999999999999 89999998876543
No 36
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.81 E-value=1.7e-19 Score=158.70 Aligned_cols=120 Identities=20% Similarity=0.270 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHh-cCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLL~~Ir-~~~~ipV 99 (529)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+++. .||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 47999999999999999999999999999999999999988765 4999999999999 99999999886 4578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.+...++++.||++||.||++.++|..++++++.+..
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999988754
No 37
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.81 E-value=1.3e-18 Score=155.59 Aligned_cols=122 Identities=26% Similarity=0.414 Sum_probs=110.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHh-------cCCCceEEEEecCCCCCCHHHHHHHHhc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRE-------NRNNFDLVISDVYMPDMDGFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e-------~~~~pDLVIlDi~MPdmdGleLL~~Ir~ 93 (529)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.++. ....|||||+|+.||+++|+++++.++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 48999999999999999999999888 89999999999999961 1235999999999999999999998864
Q ss_pred ---CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 94 ---EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 94 ---~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
.+.+|||++|+..+.+...++++.||++||.||++.++|..+++++.+...
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999977654
No 38
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.81 E-value=6.3e-19 Score=154.44 Aligned_cols=119 Identities=20% Similarity=0.367 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQ--YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~g--y~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
++||||||++..+..++.+|+..+ +.+..+.++.+|++.++... ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 689999999999999999998765 45668999999999998765 99999999999999999999886 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999886544
No 39
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.81 E-value=6.5e-19 Score=155.82 Aligned_cols=120 Identities=18% Similarity=0.331 Sum_probs=111.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~i 97 (529)
+++||||||++..+..++.+|+..|+. |..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSSTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcccccCC
Confidence 489999999999999999999998887 88899999999999765 4999999999999999999998875 5789
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCC-CHHHHHHHHHHHHHhcc
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRRKK 144 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~-~~eeL~~~l~~vlr~~~ 144 (529)
|||++|+..+.+...++++.||++||.||+ +.++|..+++++++++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 83 PIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp CEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999988754
No 40
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.81 E-value=5.3e-19 Score=154.83 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=112.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
.+|||||||++..+..++.+|+..++.|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 589999999999999999999998999999999999999998875 99999999999999999999876 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKL 127 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988654
No 41
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.80 E-value=5.6e-19 Score=153.61 Aligned_cols=118 Identities=29% Similarity=0.548 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--CCCCcE
Q 009670 24 MRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPV 99 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~--~~~ipV 99 (529)
++||||||++..+..++.+|+.. +|.++ .+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCcE
Confidence 68999999999999999999986 88876 7899999999998765 999999999999999999998864 467899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988754
No 42
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1e-18 Score=153.72 Aligned_cols=122 Identities=22% Similarity=0.290 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC---CCceEEEEecCCCCCCHHHHHHHHhc---
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENR---NNFDLVISDVYMPDMDGFKLLELVGL--- 93 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~---~~pDLVIlDi~MPdmdGleLL~~Ir~--- 93 (529)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.+++.. ..||+||+|+.||+++|+++++.++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 458999999999999999999999998 8889999999999998710 24999999999999999999998864
Q ss_pred --CCCCcEEEEecCCCHHHHHHHHhcC-CcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 94 --EMDLPVVMLSAYSDTKLVMKGINHG-ACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 94 --~~~ipVIvlTa~~d~e~v~~al~~G-A~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
.+.+|||++|+..+.+...+++..| |++||.||++.++|..+++++....
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999 9999999999999999999987654
No 43
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.80 E-value=2.7e-19 Score=154.74 Aligned_cols=118 Identities=21% Similarity=0.298 Sum_probs=106.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipV 99 (529)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 479999999999999999999999999999999999999998765 999999999999999999998864 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|++|+..+.+. .+++..||++||.||++.++|..++++..+..
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999998888 88999999999999999999999999886543
No 44
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.80 E-value=9e-19 Score=156.54 Aligned_cols=123 Identities=22% Similarity=0.361 Sum_probs=111.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQ--YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMD 96 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~g--y~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ 96 (529)
....+|||||||++..+..++.+|+..+ +.|..+.++.+|++.++... |||||+|+.||+++|+++++.++ ..+.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 3346899999999999999999999876 77889999999999997654 99999999999999999999876 4678
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++.+
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 999999999999999999999999999999999999999999987654
No 45
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.80 E-value=1.8e-18 Score=151.55 Aligned_cols=121 Identities=22% Similarity=0.392 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRE-CQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMD 96 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~-~gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ 96 (529)
.+++||||||++..+..++.+|+. .||+ |..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 358999999999999999999998 8999 889999999999998765 999999999999999999998875 578
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|||++|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999988754
No 46
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.2e-18 Score=151.64 Aligned_cols=122 Identities=18% Similarity=0.322 Sum_probs=111.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc-----CCCceEEEEecCCCCCCHHHHHHHHhcC-
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLREN-----RNNFDLVISDVYMPDMDGFKLLELVGLE- 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~-----~~~pDLVIlDi~MPdmdGleLL~~Ir~~- 94 (529)
+++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 58999999999999999999999888 899999999999999861 0259999999999999999999988754
Q ss_pred --CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 95 --MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 95 --~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+.+|||++|+..+.+...++++.||++|+.||++.++|..++++++++..
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 67999999999999999999999999999999999999999999987653
No 47
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.80 E-value=8.1e-19 Score=158.58 Aligned_cols=119 Identities=24% Similarity=0.368 Sum_probs=109.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
.++||||||++..+..++.+|+..||++. .+.++.+|++.+.+....|||||+|+.||+++|+++++.++ ..+.+|||
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii 115 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVI 115 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEE
Confidence 47999999999999999999999999988 99999999999987621389999999999999999999876 46789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
++|+..+.+...+++++||++||.||++.++|..+++++++
T Consensus 116 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 116 MISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998754
No 48
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.80 E-value=8.9e-20 Score=184.04 Aligned_cols=118 Identities=20% Similarity=0.328 Sum_probs=108.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLL~~Ir~~~~ipVI 100 (529)
+.+||||||++.++..++.+|+..||+|. .+.++.+|++.+.+.. |||||+|+.|| +|||+++++.++..+++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 36899999999999999999999999999 9999999999999865 99999999999 79999999988755599999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
++|+..+ ...++++.||++||.||++.++|..+++.++++..
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9999864 46678999999999999999999999999998643
No 49
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=8.9e-19 Score=154.79 Aligned_cols=118 Identities=24% Similarity=0.470 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvl 102 (529)
.+||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999999999999999999988999999999999999998765 999999999999999999998864 578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 50
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.80 E-value=9.9e-19 Score=152.02 Aligned_cols=118 Identities=25% Similarity=0.335 Sum_probs=104.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipV 99 (529)
.++||||||++..+..++.+|+ .+|+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 4799999999999999999998 7999999999999999998765 999999999999999999998865 458999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+... .++++.||++||.||++.++|..++++++++..
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 81 IFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 99999988777 889999999999999999999999999998764
No 51
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.79 E-value=1.4e-18 Score=151.56 Aligned_cols=118 Identities=27% Similarity=0.500 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvl 102 (529)
.+||||||++..+..++..|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 68999999999999999999999999999999999999998764 999999999999999999998864 478999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 82 TAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp ECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99998888899999999999999999999999999988764
No 52
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.79 E-value=1.1e-18 Score=154.62 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=112.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCc
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ip 98 (529)
.+++||||||++..+..++..|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 3589999999999999999999999999999999999999998765 999999999999999999998875 57899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
||++|+..+.+...++++.||++||.||++.++|..++++++++.+
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654
No 53
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.79 E-value=2.8e-19 Score=154.04 Aligned_cols=118 Identities=26% Similarity=0.397 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipVI 100 (529)
++||||||++..+..++.+|+..||++..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 6899999999999999999999999999999999999988654 49999999999999999999988753 689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988754
No 54
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.79 E-value=7.9e-19 Score=172.20 Aligned_cols=120 Identities=28% Similarity=0.466 Sum_probs=113.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
.++||||||++.++..++.+|+..+|.|..+.++.+|++.+.... |||||+|+.||+++|+++++.++..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 368999999999999999999999999999999999999998765 999999999999999999999887888999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|+..+.+.+.+++++||++||.||++.++|..+++.++++..
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999987643
No 55
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.79 E-value=2e-18 Score=152.03 Aligned_cols=122 Identities=20% Similarity=0.323 Sum_probs=111.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC--------CCceEEEEecCCCCCCHHHHHHHHh
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENR--------NNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~--------~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
+++||||||++..+..++.+|+..|| .|..+.++.+|++.++... ..||+||+|+.||+++|+++++.++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 57999999999999999999999888 8999999999999998611 2599999999999999999999887
Q ss_pred cC---CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 93 LE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 93 ~~---~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
.. +.+|||++|+..+.+...++++.|+++||.||++.++|..++++++++..
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 54 67999999999999999999999999999999999999999999987653
No 56
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.79 E-value=5.7e-19 Score=156.57 Aligned_cols=123 Identities=16% Similarity=0.270 Sum_probs=110.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCc
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLP 98 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~g-y~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ip 98 (529)
..+.+||||||++..+..++.+|+..| |+|..+.++.+++..+.+....|||||+|+.||+++|+++++.++ ..+.+|
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 346899999999999999999999888 999999999988887654201499999999999999999999775 467899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998764
No 57
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.79 E-value=1.2e-18 Score=172.57 Aligned_cols=121 Identities=28% Similarity=0.419 Sum_probs=111.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipV 99 (529)
.++||||||++..+..+...|+..+|.|..+.++.+|++.++... .||+||+|+.||++||+++++.++.. ..+||
T Consensus 124 ~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~i 202 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAI 202 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeE
Confidence 589999999999999999999999999999999999999998652 48999999999999999999988642 36899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.+...+++++||+|||.||++.++|..++++++++..
T Consensus 203 i~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 203 IGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 999999999999999999999999999999999999999987644
No 58
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.79 E-value=2.9e-18 Score=153.27 Aligned_cols=126 Identities=23% Similarity=0.321 Sum_probs=110.8
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCC
Q 009670 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEM 95 (529)
Q Consensus 19 ~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~ 95 (529)
..+.+.|||||||++..+..++.+|+..++. |..+.++.+|++.+++.. |||||+|+.||+++|+++++.++ ..+
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 3455789999999999999999999987754 447999999999998865 99999999999999999999876 467
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccCC
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVD 146 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~ 146 (529)
.+|||++|+..+.+...++++.||++||.||++.++|..+++.++++....
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 899999999999999999999999999999999999999999999876543
No 59
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.79 E-value=2.1e-18 Score=152.02 Aligned_cols=118 Identities=29% Similarity=0.427 Sum_probs=105.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipVI 100 (529)
++||||||++..+..++.+|+..||.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 68999999999999999999999999999999999999998764 9999999999999999999988643 578999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++|+..+......++..|+++||.||++.++|..+++.++++.
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 9999887666666667788999999999999999999987653
No 60
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.79 E-value=2.2e-18 Score=150.78 Aligned_cols=121 Identities=22% Similarity=0.344 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhcCCCCcE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLL~~Ir~~~~ipV 99 (529)
..++||||||++..+..++.+|+..||++. .+.++.+|++.++... ||+||+|+.|| +++|+++++.++..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 358999999999999999999999899999 5999999999998765 99999999999 7999999998864488999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.+...++++.||++||.||++.++|..+++++++++.
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999988654
No 61
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.79 E-value=1.1e-19 Score=159.36 Aligned_cols=119 Identities=18% Similarity=0.098 Sum_probs=108.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPV 99 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~g-y~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipV 99 (529)
..++||||||++..+..++.+|+..| |+|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADT--RPGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTC--CCSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhcc--CCCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 35799999999999999999999999 9999999999999988655 4999999999999999999998864 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999987654
No 62
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.79 E-value=1.3e-18 Score=163.91 Aligned_cols=119 Identities=30% Similarity=0.436 Sum_probs=110.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
.++||||||++..+..++.+|+..||+|. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++.....|||+
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~ 90 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAPIVV 90 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEE
Confidence 47999999999999999999999999988 8999999999998765 99999999999999999999887655569999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 63
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.78 E-value=6.8e-19 Score=154.97 Aligned_cols=120 Identities=23% Similarity=0.333 Sum_probs=101.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipV 99 (529)
.++||||||++..+..++.+|+.. |.|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 479999999999999999999887 99999999999999998875 9999999999999999999988754 78999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccC
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~ 145 (529)
|++|+..+.+...++++.||++||.||++.++|..+++++++++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999988899999999999999999999999999999987653
No 64
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.78 E-value=4.5e-18 Score=147.63 Aligned_cols=119 Identities=22% Similarity=0.391 Sum_probs=102.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCC---CCc
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM---DLP 98 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~---~ip 98 (529)
.+++||||||++..+..++.+|++.||+|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.++... .++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 3589999999999999999999999999999999999999998765 99999999999999999999887543 445
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
||+++..... ...++++.||++||.||++.++|..+++++....
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 6666555554 7889999999999999999999999999987654
No 65
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.78 E-value=4.8e-18 Score=148.67 Aligned_cols=120 Identities=27% Similarity=0.444 Sum_probs=110.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHh-cCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVG-LEMD 96 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~Ir-~~~~ 96 (529)
.++||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.|| +++|+++++.++ ..+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 479999999999999999999999999999999999999998765 99999999999 999999999775 4678
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987654
No 66
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.78 E-value=1.1e-18 Score=153.50 Aligned_cols=121 Identities=22% Similarity=0.366 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCc
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ip 98 (529)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 3589999999999999999999999999999999999999998764 999999999999999999998864 56799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
||++|+..+.+...++++.||++||.||++.++|..++++++++.+
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 9999999988888899999999999999999999999999987654
No 67
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.78 E-value=4e-18 Score=162.07 Aligned_cols=120 Identities=34% Similarity=0.564 Sum_probs=112.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIv 101 (529)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 379999999999999999999999999999999999999998764 999999999999999999998864 57899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999988754
No 68
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.77 E-value=1.3e-18 Score=181.70 Aligned_cols=119 Identities=28% Similarity=0.448 Sum_probs=111.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
.|||||||++.++..++.+|+..||.|..+.++.+|++.++... |||||+|+.||++||+++++.++ ..+.+|||++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 48999999999999999999999999999999999999998765 99999999999999999999876 4678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++.+.+.+.++++.||+|||.||++.++|..++++++.+..
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987643
No 69
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.77 E-value=4.7e-19 Score=170.41 Aligned_cols=119 Identities=24% Similarity=0.348 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQ-YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~g-y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
++||||||++..+..++.+|+..+ |.++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 799999999999999999999876 8855 7999999999998765 99999999999999999999876 46789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999998754
No 70
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.77 E-value=3.4e-18 Score=150.55 Aligned_cols=119 Identities=27% Similarity=0.452 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
.++||||||++..+..++.+|+..||+|..+.++.+|++.++.. .||+||+|+ ||+++|+++++.++ ..+.+|||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEE
Confidence 47999999999999999999999999999999999999999875 499999999 99999999999775 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999987644
No 71
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.77 E-value=3.5e-18 Score=149.69 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=105.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCC----C
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEM----D 96 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~----~ 96 (529)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+... +|+||+|+.||+++|+++++.++ ..+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 358999999999999999999999999999999999999988532 49999999999999999999775 222 2
Q ss_pred C-cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 97 L-PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 97 i-pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
. +||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 3 5888999999999999999999999999999999999999987653
No 72
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.77 E-value=1.9e-18 Score=162.70 Aligned_cols=119 Identities=26% Similarity=0.436 Sum_probs=109.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPE--QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 36899999999999999999999999999999999999988654 499999999999999999999886 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999889999999999999999999999999999988753
No 73
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.77 E-value=5.5e-18 Score=151.58 Aligned_cols=120 Identities=27% Similarity=0.468 Sum_probs=110.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
+++||||||++..+..++.+|+. +|+|..+.++.+|++.+++.. .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 81 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLM 81 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEE
Confidence 57999999999999999999976 899999999999999998753 359999999999999999999776 468899999
Q ss_pred EecCCCHHHHHHHHhcC-CcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHG-ACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~G-A~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+.+...++++.| |++||.||++.++|..+++.++++.+
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999987654
No 74
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.77 E-value=2.9e-18 Score=145.60 Aligned_cols=113 Identities=28% Similarity=0.488 Sum_probs=102.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
++||||||++..+..++..|+..||++..+.++.+|++.++... ||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 58999999999999999999999999999999999999998764 99999999999999999999886 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
|+..+.. .++++.||++|+.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9987655 67889999999999999999999998764
No 75
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.77 E-value=2.1e-19 Score=172.33 Aligned_cols=121 Identities=9% Similarity=0.024 Sum_probs=105.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHH-HHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--CCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTV-TNRAITALK-MLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~~-a~sa~eALe-~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~--~~~i 97 (529)
.++||||||++.++..++.+|+. .+|.+.. +.++.+++. .+... .||+||+|+.||+++|+++++.++. .+++
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 84 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESR--SIQMLVIDYSRISDDVLTDYSSFKHISCPDA 84 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGG--GCCEEEEEGGGCCHHHHHHHHHHHHHHCTTC
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhcc--CCCEEEEeCCCCCCCHHHHHHHHHHhhCCCC
Confidence 58999999999999999999984 6888864 455666555 35544 4999999999999999999998865 7899
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccC
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKV 145 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~ 145 (529)
|||++|+..+......+++.||++||.||++.++|..+++.++++...
T Consensus 85 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 132 (225)
T 3klo_A 85 KEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMW 132 (225)
T ss_dssp EEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCB
T ss_pred cEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEe
Confidence 999999999998999999999999999999999999999999987543
No 76
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.77 E-value=7.6e-18 Score=150.87 Aligned_cols=121 Identities=28% Similarity=0.450 Sum_probs=111.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 3589999999999999999999999999999999999999998654 99999999999999999999875 46789999
Q ss_pred EEecCCCHHHHHHHHhcC-CcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 101 MLSAYSDTKLVMKGINHG-ACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~G-A~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
++|+..+.....++++.| |++||.||++.++|..++++++++.+
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999999987643
No 77
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.77 E-value=3.1e-18 Score=168.65 Aligned_cols=120 Identities=30% Similarity=0.475 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVI 100 (529)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 3689999999999999999999999999999999999999998764 999999999999999999998864 5689999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987653
No 78
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.76 E-value=7e-18 Score=151.26 Aligned_cols=120 Identities=28% Similarity=0.481 Sum_probs=110.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 58999999999999999999999999999999999999988765 499999999999999999999775 467899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+.....++++.||++||.||++.++|..++++++++++
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987654
No 79
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.76 E-value=9.3e-18 Score=150.14 Aligned_cols=120 Identities=18% Similarity=0.334 Sum_probs=111.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipV 99 (529)
+++||||||++..+..++.+|+. .||.+. .+.++.+|++.++... ||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 48999999999999999999988 799988 8999999999998764 99999999999999999999876 4678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999987654
No 80
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.3e-17 Score=146.61 Aligned_cols=120 Identities=19% Similarity=0.294 Sum_probs=108.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC----CCceEEEEecCCCCCCHHHHHHHHhcC--
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENR----NNFDLVISDVYMPDMDGFKLLELVGLE-- 94 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~----~~pDLVIlDi~MPdmdGleLL~~Ir~~-- 94 (529)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.++... ..||+||+|+.||+++|+++++.++..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 47899999999999999999998888 8999999999999998611 259999999999999999999988754
Q ss_pred -CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 95 -MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 95 -~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+.+|||++|+..+.+...++++.||++||.||++.++|..++......
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999987766543
No 81
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.76 E-value=3e-18 Score=152.11 Aligned_cols=117 Identities=26% Similarity=0.437 Sum_probs=100.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRE--CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~--~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipV 99 (529)
++||||||++..+..++..|+. .+|.+. .+.++.+|++.++.. .||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 6899999999999999999963 688877 899999999998765 499999999999999999999876 4678999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999888889999999999999999999999999988765
No 82
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.76 E-value=8.7e-18 Score=143.68 Aligned_cols=116 Identities=21% Similarity=0.311 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhc---CCCCcE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGL---EMDLPV 99 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLL~~Ir~---~~~ipV 99 (529)
++||||||++..+..++..|+..||+|..+.++.+|++.++... ||+||+|+.|| +++|+++++.++. .+.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 58999999999999999999999999999999999999998765 99999999999 9999999998865 478999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
|++ +..+.....++++.|+++|+.||++.++|..+++++++.
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 999 888888899999999999999999999999999988753
No 83
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.76 E-value=3.3e-18 Score=178.26 Aligned_cols=118 Identities=25% Similarity=0.525 Sum_probs=106.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
.++||||||++..+..++.+|++.||+|..+.++.+|++.+++.. |||||+|+.||++||+++++.++ ..+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 479999999999999999999999999999999999999998765 99999999999999999999886 457899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCC-CHHHHHHHHHHHHHh
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRR 142 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~-~~eeL~~~l~~vlr~ 142 (529)
+|++.+.+.+.++++.||+|||.||+ ..++|..++++++++
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 688898888887764
No 84
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.76 E-value=6e-18 Score=161.65 Aligned_cols=118 Identities=29% Similarity=0.428 Sum_probs=111.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 69999999999999999999999999999999999999998765 9999999999999999999988766889999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999889999999999999999999999999999998764
No 85
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.75 E-value=2e-17 Score=145.67 Aligned_cols=117 Identities=26% Similarity=0.393 Sum_probs=105.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
.+||||||++..+..++.+|+.. |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 48999999999999999999875 89999999999999998764 99999999999999999999886 4578899999
Q ss_pred ecCCCHHHHHHHHhc-CCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINH-GACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~-GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.....+++.. ||++||.||++.++|..++++++++.
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999988888889876 59999999999999999999988653
No 86
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.75 E-value=6.7e-18 Score=161.37 Aligned_cols=120 Identities=37% Similarity=0.537 Sum_probs=111.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIv 101 (529)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998764 999999999999999999998864 57899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
+|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999998888999999999999999999999999999988754
No 87
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.75 E-value=6.7e-18 Score=163.17 Aligned_cols=118 Identities=35% Similarity=0.571 Sum_probs=110.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt 83 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLT 83 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEe
Confidence 68999999999999999999999999999999999999998765 9999999999999999999988866789999999
Q ss_pred cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 104 AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 104 a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 84 AKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp ETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999989999999999999999999999999999987654
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.75 E-value=1.2e-17 Score=175.27 Aligned_cols=118 Identities=28% Similarity=0.534 Sum_probs=110.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
|+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++ ..+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 68999999999999999999988999999999999999998764 99999999999999999999886 4678999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|++.+.+.+.++++.||+|||.||++.++|..+++++++..
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988653
No 89
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.74 E-value=1.7e-17 Score=175.52 Aligned_cols=118 Identities=32% Similarity=0.470 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipVI 100 (529)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.... |||||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999998874 3578999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++|+..+.+...++++.||+|||.||++.++|..+++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987653
No 90
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.74 E-value=1.2e-17 Score=149.19 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=100.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-QY-EVTVTNRAITALKMLRE-NRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-gy-~V~~a~sa~eALe~L~e-~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ip 98 (529)
.++||||||++..+..++.+|+.. |+ .|..+.++.+|++.++. . .||+||+|+.||+++|+++++.++ ..+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADN--TVDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTC--CCSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccC--CCCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999986 88 57789999999999987 4 499999999999999999999875 457899
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhccCC
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKKVD 146 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~~~ 146 (529)
||++|+..+.+...++++.||++||.||++.++|..+++++++++...
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 999999999999999999999999999999999999999998876543
No 91
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.73 E-value=8.9e-18 Score=148.95 Aligned_cols=115 Identities=24% Similarity=0.330 Sum_probs=95.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
.+.+.+||||||++..+..++.+|+.. +|.++ .+.++.+|++.+.... .|||||+|+.||+++|+++++.++....+
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 345679999999999999999999987 88865 8999999999998762 49999999999999999999988755558
Q ss_pred cEEEEec--CCCHHHHHHHHhcCCcEeEeCCCCHHHHHHH
Q 009670 98 PVVMLSA--YSDTKLVMKGINHGACDYLLKPVRMEELKNT 135 (529)
Q Consensus 98 pVIvlTa--~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~ 135 (529)
|+|++++ ..+.+...++++.||++||.||++.++|...
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 128 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLE 128 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-----
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 9999997 6666778899999999999999996555443
No 92
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=5.1e-17 Score=142.39 Aligned_cols=116 Identities=20% Similarity=0.274 Sum_probs=106.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCC-CCcE
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM-DLPV 99 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~-~ipV 99 (529)
..+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+|| ||+++|+++++.++..+ .+||
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~i 89 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVV 89 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCccE
Confidence 34689999999999999999999999999999999999999998764 99999 89999999999886447 8999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCC-CHHHHHHHHHHHHHh
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~-~~eeL~~~l~~vlr~ 142 (529)
|++|+..+.+...++++.||++||.||+ +.++|..++++++++
T Consensus 90 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 90 LVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999988754
No 93
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.73 E-value=7.3e-17 Score=142.14 Aligned_cols=118 Identities=23% Similarity=0.398 Sum_probs=103.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC-CCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~-~~ipV 99 (529)
.++||||||++..+..++.+|+.. ++.++ .+.++.+|++.++... |||||+|+.||+++|+++++.++.. +.+||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 86 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPFI 86 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCceE
Confidence 589999999999999999999875 88854 8899999999998764 9999999999999999999988754 45678
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|++|+..+ ...++++.||++||.||++.++|..++++++++.+
T Consensus 87 i~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 87 VFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp EEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99998754 57789999999999999999999999999887643
No 94
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.73 E-value=1.7e-17 Score=146.31 Aligned_cols=116 Identities=22% Similarity=0.396 Sum_probs=101.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc------CCCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL------EMDL 97 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~------~~~i 97 (529)
++||||||++..+..++.+|+..|+.+..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~ 88 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRA 88 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCce
Confidence 69999999999999999999988999999999999999998764 999999999999999999998764 3678
Q ss_pred cEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 98 PVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 98 pVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
|||++|+........ ++||++||.||++.++|..+++.++++..
T Consensus 89 ~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 89 SIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp CCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 999999876544322 78999999999999999999999886544
No 95
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.73 E-value=7.1e-17 Score=139.75 Aligned_cols=119 Identities=20% Similarity=0.376 Sum_probs=107.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHh-cCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD-MDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdGleLL~~Ir-~~~~ipVI 100 (529)
+++||||||++..+..++..|+..||+|..+.++.+|++.++... .||+||+|+.||+ ++|+++++.++ ..+.+|||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGA-AIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC-CCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCC-CCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 479999999999999999999999999999999999999998751 4999999999997 99999999876 45789999
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
++|+..+.....++++.| +||.||++.++|..+++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 84 YISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 999999888888887776 899999999999999999987654
No 96
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.73 E-value=2.3e-17 Score=138.56 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=103.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC---CCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE---MDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~---~~ipV 99 (529)
+++||||||++..+..++.+|+..||+|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 368999999999999999999999999999999999999998765 9999999999999999999988644 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
|++|+..+.. ++++.|+++|+.||++.++|..++++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999988766 8899999999999999999999988664
No 97
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.72 E-value=1.2e-17 Score=144.87 Aligned_cols=118 Identities=21% Similarity=0.329 Sum_probs=105.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIv 101 (529)
+++||||||++..+..++.+|+..++.|..+.++.++++.+.. . ||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888889999999999987753 2 99999999999999999999876 467899999
Q ss_pred EecCCCH-----HHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDT-----KLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~-----e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+..+. +...++++.||++||.||++.++|..+++++....
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 9999875 66777889999999999999999999999987654
No 98
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.72 E-value=6.2e-17 Score=147.64 Aligned_cols=118 Identities=23% Similarity=0.412 Sum_probs=100.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQ-YEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~g-y~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.++||||||++..+..++.+|+..+ +.++ .+.++.+|++.++... ||+||+|+.||+++|+++++.++....+|||
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii 102 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTRVI 102 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCceEE
Confidence 4799999999999999999999864 4444 7899999999998775 9999999999999999999988754448999
Q ss_pred EEecCCCHH--HHHHHHhcCCcEeEeCCCC---------HHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTK--LVMKGINHGACDYLLKPVR---------MEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e--~v~~al~~GA~DYL~KP~~---------~eeL~~~l~~vlr~ 142 (529)
++|+..+.. .+.++++.||++||.||++ .++|..++++++.+
T Consensus 103 ~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 103 MVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp EEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred EEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 999977644 6779999999999999999 56777777766543
No 99
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.72 E-value=3e-17 Score=167.50 Aligned_cols=117 Identities=23% Similarity=0.330 Sum_probs=107.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ip 98 (529)
.++||||||++.++..++.+|+. .||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 36899999999999999999964 6899999999999999998765 999999999999999999998875 35799
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
||++|+..+.+...++++.||+|||.||++.++|..+++.+++
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987754
No 100
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.71 E-value=5.1e-17 Score=154.44 Aligned_cols=115 Identities=28% Similarity=0.432 Sum_probs=106.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvl 102 (529)
++||||||++..+..++.+|+..| .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 689999999999999999999888 888999999999877 2 4999999999999999999998864 488999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998874
No 101
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.71 E-value=2.1e-17 Score=154.58 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=103.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC-CCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~-~~ipVIv 101 (529)
+++||||||++..+..++.+|+..||.|..+.++.+|+ . ..||+||+|+.||+++|+ +++.++.. +.+|||+
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~ 84 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVA 84 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEE
Confidence 58999999999999999999998899999888777766 2 259999999999999999 88888765 8899999
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 85 lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654
No 102
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.69 E-value=7.2e-17 Score=169.29 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=106.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVI 100 (529)
.+|||||||++.++..++.+|+. .++.|..+.++.+|++.++... .|||||+|+.||+|||+++++.++. .+.++||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~-~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCG-HVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHS-CEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 37999999999999999999988 6789999999999999998731 4999999999999999999998864 4556777
Q ss_pred EEecCCCH-----HHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhcc
Q 009670 101 MLSAYSDT-----KLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRKK 144 (529)
Q Consensus 101 vlTa~~d~-----e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~~ 144 (529)
++|+..+. ....++++.||++||.||++.++|..++++++++..
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 77777766 667789999999999999999999999999987654
No 103
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.3e-16 Score=152.03 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=105.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCC-CCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM-DLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~-~ipVIvl 102 (529)
|+||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+|| ||+++|+++++.++..+ .+|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 6899999999999999999998999999999999999999765 499999 99999999999886446 8999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCC-CHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPV-RMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~-~~eeL~~~l~~vlr~~ 143 (529)
|+..+.+...++++.||++||.||+ +.++|..+++.++++.
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999 9999999999998764
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.69 E-value=6e-17 Score=142.11 Aligned_cols=118 Identities=21% Similarity=0.256 Sum_probs=101.6
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhc-CCC
Q 009670 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRE-NRNNFDLVISDVYMPDMDGFKLLELVGL-EMD 96 (529)
Q Consensus 19 ~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e-~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ 96 (529)
..+.+++||||||++..+..++.+|+..||+|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.++. .+.
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~~~ 88 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQTKQ 88 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCC
Confidence 34567899999999999999999999999999999999999999876 54 999999999999999999998864 568
Q ss_pred CcEEEEe-cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 97 LPVVMLS-AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlT-a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|||++| +..+... .+++ +++|+.||++.++|..++++++++
T Consensus 89 ~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 89 PSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 9999999 8877665 5665 999999999999999999887643
No 105
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.68 E-value=1.8e-18 Score=147.71 Aligned_cols=118 Identities=31% Similarity=0.423 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvl 102 (529)
.+||||||++..+..++..|+..||.+..+.++.++++.+... .||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 6799999999999999999998899999999999999988654 499999999999999999999775 4578999999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|+..+.+...++++.||++|+.||++.++|..+++++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99998888889999999999999999999999999988754
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.63 E-value=2.9e-15 Score=155.53 Aligned_cols=118 Identities=27% Similarity=0.445 Sum_probs=103.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-QYE-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+|||||||++..+..++.+|+.. +|+ |..+.++.+|++.+++.. ||+||+|+.||+++|+++++.++....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 379999999999999999999985 898 458999999999998765 9999999999999999999988754449999
Q ss_pred EEecCCCH--HHHHHHHhcCCcEeEeCCCCH---------HHHHHHHHHHHHh
Q 009670 101 MLSAYSDT--KLVMKGINHGACDYLLKPVRM---------EELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~--e~v~~al~~GA~DYL~KP~~~---------eeL~~~l~~vlr~ 142 (529)
++|+..+. +...++++.||+|||.||++. ++|..+++++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99998875 458899999999999999983 7788888887654
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.60 E-value=1.2e-15 Score=150.83 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=85.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRE-CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~-~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
.|||||||++.++..++..|+. .+|.+..+ ++.+++..+... .||+||+|+.||++||+++++.++.. .+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~~-~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLER-GLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 5899999999999999999976 47777544 455555554333 59999999999999999999988753 6899999
Q ss_pred ecCCCHHHHHHHHhcCCcEeEeCCCCH
Q 009670 103 SAYSDTKLVMKGINHGACDYLLKPVRM 129 (529)
Q Consensus 103 Ta~~d~e~v~~al~~GA~DYL~KP~~~ 129 (529)
|+..+.+...+++++||+|||.||+..
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 999999999999999999999999743
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.57 E-value=3.3e-15 Score=169.50 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=107.9
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC----CCHHHHHHHH
Q 009670 24 MRVLAVDDDQ-TC-------LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD----MDGFKLLELV 91 (529)
Q Consensus 24 mrVLIVDDd~-~v-------~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd----mdGleLL~~I 91 (529)
|||||||||+ .. ++.|+..|++.||+|..+.++.+|++.++... .+|+||+|+.||+ ++|+++++.+
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 6999999999 88 99999999999999999999999999997642 4999999999999 9999999988
Q ss_pred hc-CCCCcEEEEecCCC-HHHHHHHHhcCCcEeEeCCCCHHH-HHHHHHHHHHhc
Q 009670 92 GL-EMDLPVVMLSAYSD-TKLVMKGINHGACDYLLKPVRMEE-LKNTWQHVIRRK 143 (529)
Q Consensus 92 r~-~~~ipVIvlTa~~d-~e~v~~al~~GA~DYL~KP~~~ee-L~~~l~~vlr~~ 143 (529)
|. ..++||||+|+..+ .+....++..||+||+.||++..+ |..+|+++++++
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 64 46899999999877 677788899999999999999999 888999888875
No 109
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.52 E-value=1.4e-14 Score=114.52 Aligned_cols=62 Identities=73% Similarity=1.146 Sum_probs=58.7
Q ss_pred cCCCcceehhHHHHHHHHHHHHhcCCCcchHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Q 009670 188 TQKKPRVVWTTELHTKFIGAVNLLGLDKAVPKKILDLMNVEGLTRENVASHLQKFRLSLKRL 249 (529)
Q Consensus 188 ~~kk~r~vw~~~L~~kflaavn~lGldkavPd~IL~~mk~~~LT~eEvAshLqkyr~~Lk~~ 249 (529)
..+++|+.|+.++|.+|+.|++++|.++++|+.||++|++++||.++|++||||||.++++.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 35678999999999999999999999999999999999999999999999999999998875
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.93 E-value=1.5e-08 Score=106.87 Aligned_cols=117 Identities=25% Similarity=0.330 Sum_probs=98.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipV 99 (529)
..+|++|||+......+...|.. .+.+....+..+++. .... .||++++|+.||+|+|+++++.++. ...+||
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 46899999999888888888755 466777788888763 3333 4899999999999999999998864 346899
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
|++|+..+.....++++.|++||+.||+..+++...+..+++++
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887776543
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.93 E-value=7.1e-10 Score=105.34 Aligned_cols=92 Identities=21% Similarity=0.366 Sum_probs=76.9
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC-
Q 009670 49 EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP- 126 (529)
Q Consensus 49 ~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP- 126 (529)
.|..+.++.+|++.++... |||||+|+.||+++|+++++.++ ..+..++++++.....+...++++.||++|+.||
T Consensus 7 ~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~ 84 (237)
T 3cwo_X 7 IVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTA 84 (237)
T ss_dssp EEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHH
T ss_pred EEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCCc
Confidence 3445788899999998765 99999999999999999999876 3456677777777778889999999999999999
Q ss_pred -CCHHHHHHHHHHHHHh
Q 009670 127 -VRMEELKNTWQHVIRR 142 (529)
Q Consensus 127 -~~~eeL~~~l~~vlr~ 142 (529)
++..++...+.+.+..
T Consensus 85 ~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 85 AVENPSLITQIAQTFGS 101 (237)
T ss_dssp HHHCTHHHHHHHHHHTG
T ss_pred ccChHHHHHHHHHHhCC
Confidence 7778888888777654
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.11 E-value=0.00071 Score=65.83 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=71.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
..+.+||||||++..+..+..+|+..|++|..+.+ .....+|++|+|+.||+..+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 46789999999999999999999999999987764 112358999999999975431 1256
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.++...... ....+...++.||+...++...+.++..
T Consensus 69 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 666543211 1133456899999999888888877654
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.93 E-value=0.0011 Score=74.81 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHHHHHHH
Q 009670 36 LKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa~~d~e~v~~a 114 (529)
.+.|...|++.||+|..+.+.++|+..++++. .+++||+|+.|+ +.++++.|+ .+.++||++++.......+.-.
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~-~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~ 94 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLN 94 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHCT-TEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGT
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCC-CceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchh
Confidence 34555778888999999999999999999864 699999999886 788998775 6789999999887543322211
Q ss_pred HhcCCcEeEeCCC-CHHHHHHHHHHHHHhc
Q 009670 115 INHGACDYLLKPV-RMEELKNTWQHVIRRK 143 (529)
Q Consensus 115 l~~GA~DYL~KP~-~~eeL~~~l~~vlr~~ 143 (529)
.-.++++|+.+.. +.+.+...|.+.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 95 DLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp TSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2357888999885 4455555665555443
No 114
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=96.83 E-value=0.00032 Score=71.82 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=41.6
Q ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-ccCCCCchhhhhhhhhhcCCCCccCCCC
Q 009670 217 VPKKILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEAGMVA-SVGSKDSSYLRIGALDGFGGSHSVNSPG 288 (529)
Q Consensus 217 vPd~IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~~~~~~~g~~-~l~~sd~~~l~~aa~ial~hhe~~dGsG 288 (529)
+|+.|+ .|+++||.+| +.. ++.|.. .|+. ++... ++....+.++++|||+|||+|
T Consensus 210 ip~~il--~k~~~L~~~E-------~~~-~~~H~~-----~G~~~ll~~~--~~~~~v~~~i~~HHEr~dGsG 265 (328)
T 3tm8_A 210 SPLNLN--QPLDSMSPED-------LAL-WKKHPI-----EGAQKVQDKK--HFDQTVINIIGQHEETINGTG 265 (328)
T ss_dssp CSCCCS--SCGGGSCHHH-------HHH-HHHHHH-----HHHHHHTTCT--TSCHHHHHHHHHTTCCTBSCS
T ss_pred CCHHHH--hCCCCCCHHH-------HHH-HHHHHH-----HHHHHHHHhC--CCcHHHHHHHHHhcCCCCCCC
Confidence 455555 5778899999 444 888998 7777 54433 455777889999999999999
No 115
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.21 E-value=0.013 Score=50.13 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=79.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---CCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---EMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~~~ipVI 100 (529)
-.||+|-.|-..-..+++++....|++++.....+ ...-|+|+|.+-+-.. .+.. ....-+|
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe-------~ifS~k~~~~~dli 77 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR-------EIRSPKSLEGSFVL 77 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT-------TCCCCTTCCSCEEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH-------HhcCCCCCCcccEE
Confidence 46889988888888999998777899887643211 1247999999854321 1221 2234588
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
++-..-+.+.+.+.++.||. ||+.|+++.-+.++|+..++..
T Consensus 78 VLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 78 VLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred EEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 88888889999999999999 9999999999999999988753
No 116
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.69 E-value=0.052 Score=50.60 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=62.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEec-CCCCCCHH--HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE------eC
Q 009670 55 RAITALKMLRENRNNFDLVISDV-YMPDMDGF--KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL------LK 125 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi-~MPdmdGl--eLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL------~K 125 (529)
+..+.++.+.... ..++++.++ .++.++|+ ++++.++...++|||.+++....+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666555442 357999997 56666664 46666666678999999999999999999999999985 67
Q ss_pred CCCHHHHHHHHH
Q 009670 126 PVRMEELKNTWQ 137 (529)
Q Consensus 126 P~~~eeL~~~l~ 137 (529)
|+++.++...++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 888888877543
No 117
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.60 E-value=0.59 Score=42.67 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=79.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLL~~Ir~ 93 (529)
..||++. |-+..=...+..+|+..||+|... ...++.++.+++.. +|+|.+-..+.. +. --++++.++.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4688888 788888889999999999999843 46788888888765 999999887663 11 2334455543
Q ss_pred C--CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 94 E--MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 94 ~--~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
. .+++|+ +.+..-.+....+.+.|++.++..--+..+....++.++..
T Consensus 96 ~g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 96 LGADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp TTCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 2 356655 55655544444566899987665444556666666666554
No 118
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=93.21 E-value=0.67 Score=44.84 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=69.2
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC------CCCCCHHHHHHHH
Q 009670 23 GMRVLAVDD----DQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY------MPDMDGFKLLELV 91 (529)
Q Consensus 23 ~mrVLIVDD----d~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~------MPdmdGleLL~~I 91 (529)
|..++++|- +|.....+.+.+++.|..+. .+.+.+++..+.+. .+|+|.+..+ .+...++++++.+
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 455666553 33333444444556677755 56788888877654 4898864322 2334568888877
Q ss_pred hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 92 GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 92 r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+.. ++|||.-.+-.+.+.+.+++++||+.+++=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 655 899999999999999999999999999764
No 119
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=91.53 E-value=1.7 Score=42.07 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=68.0
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC------CCCCCHHHHHHHH
Q 009670 23 GMRVLAVDD----DQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY------MPDMDGFKLLELV 91 (529)
Q Consensus 23 ~mrVLIVDD----d~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~------MPdmdGleLL~~I 91 (529)
|..+++++- +|.....+.+.+++.|..+. .+.+.+++.++.+. .+|+|.+..+ .....++++++.+
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 455555553 23333444444556677655 56788888777653 4898864322 1233467888877
Q ss_pred hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 92 GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 92 r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+.. ++|||.-.+-.+.+.+.+++++||+..++=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 655 899999999999999999999999998764
No 120
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=90.42 E-value=1.5 Score=43.55 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=67.5
Q ss_pred HHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC-----CCHHHHHHHHhcCCCCcEEEEecCCCHHHHH
Q 009670 40 EKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAYSDTKLVM 112 (529)
Q Consensus 40 ~~~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-----mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~ 112 (529)
.+.|.+.||.|. ++.+...|.++.. . .+++| +.+..|- ....++++.++...++|||+=.+-...+.+.
T Consensus 128 a~~L~~~Gf~Vlpy~~dd~~~akrl~~-~--G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa 203 (265)
T 1wv2_A 128 AEQLVKDGFDVMVYTSDDPIIARQLAE-I--GCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAA 203 (265)
T ss_dssp HHHHHTTTCEEEEEECSCHHHHHHHHH-S--CCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHH
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHH-h--CCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHH
Confidence 334556799977 4456666655543 3 37777 5544441 2237788888777899999988889999999
Q ss_pred HHHhcCCcEeEeCC-----CCHHHHHHHHHHHHH
Q 009670 113 KGINHGACDYLLKP-----VRMEELKNTWQHVIR 141 (529)
Q Consensus 113 ~al~~GA~DYL~KP-----~~~eeL~~~l~~vlr 141 (529)
.++++||+..++-- -++..+...+...+.
T Consensus 204 ~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 204 IAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 99999999987643 335555555555543
No 121
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=87.36 E-value=14 Score=32.28 Aligned_cols=107 Identities=11% Similarity=-0.029 Sum_probs=69.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCC-C-HHHHHHHHhc-CC-CCcEEEE
Q 009670 30 DDDQTCLKILEKFLRECQYEVT---VTNRAITALKMLRENRNNFDLVISDVYMPDM-D-GFKLLELVGL-EM-DLPVVML 102 (529)
Q Consensus 30 DDd~~v~~~L~~~Le~~gy~V~---~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm-d-GleLL~~Ir~-~~-~ipVIvl 102 (529)
|-+..=...+..+|+..||+|. .....++.++.+.+.. +|+|.+-..+... . --++++.++. .. +++| ++
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v-~v 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILL-YV 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEE-EE
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEE-EE
Confidence 4455566678888999999988 4467888888888765 9999998877531 1 1224455543 22 5555 45
Q ss_pred ecCC-----CHHH-HHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 103 SAYS-----DTKL-VMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 103 Ta~~-----d~e~-v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
.+.. +... ...+.+.|++.|+.---+..++...+...
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 5542 2222 44567899988886556777766665543
No 122
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=87.03 E-value=10 Score=36.88 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=72.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHH-HHHHHHhc
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTV---TNRAITALKMLRENRNNFDLVISDVYMPD-MDGF-KLLELVGL 93 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~---a~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdGl-eLL~~Ir~ 93 (529)
+-+||++ |-+..=..++..+|+..||+|.. -...++.++.+++.+ ||+|.+-..|.. +..+ ++++.++.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4678887 66677778888999999999863 346677778887765 999999887764 4433 45666653
Q ss_pred -CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 94 -EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 94 -~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
.+++||++=-.....+.. -..||+.|-.-. .+....++.++
T Consensus 201 ~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 201 NGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred cCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 456776655444454432 377987775433 44445555554
No 123
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=85.65 E-value=8.2 Score=32.52 Aligned_cols=114 Identities=11% Similarity=0.198 Sum_probs=63.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH-HHHHHHhcCCCCcEEEEe
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGF-KLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGl-eLL~~Ir~~~~ipVIvlT 103 (529)
-|++..-|+..++..+.++++.||.|.++.+..+..+.+++.-..+..-|+=+...+..-. ..++.++.-..-..|++-
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiy 83 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIY 83 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEE
Confidence 3455567788888899999999999999999999888887754344433322222222211 122333322222233333
Q ss_pred cCCCHHHH----HHHHhcCCcEeEeCC-CCHHHHHHHHHHHHHh
Q 009670 104 AYSDTKLV----MKGINHGACDYLLKP-VRMEELKNTWQHVIRR 142 (529)
Q Consensus 104 a~~d~e~v----~~al~~GA~DYL~KP-~~~eeL~~~l~~vlr~ 142 (529)
.++ .... ++..+.|. -... -++++++..+.++++.
T Consensus 84 dqd-qnrleefsrevrrrgf---evrtvtspddfkkslerlire 123 (134)
T 2l69_A 84 DQD-QNRLEEFSREVRRRGF---EVRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp CSC-HHHHHHHHHHHHHTTC---CEEEESSHHHHHHHHHHHHHH
T ss_pred eCc-hhHHHHHHHHHHhcCc---eEEEecChHHHHHHHHHHHHH
Confidence 332 2222 22333443 2333 3567788888888764
No 124
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=85.37 E-value=9 Score=37.23 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=58.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcC--CCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLE--MDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~--~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
.+.+.+|+.+..+. .+|.|.+.-..|. .-|++.++.+... .++|||.+.+- +.+.+.+++++||+.+
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 67888888877653 4899998765443 2368888877644 48999999887 6677889999999998
Q ss_pred Ee-----CCCCHHHHHHHHHHH
Q 009670 123 LL-----KPVRMEELKNTWQHV 139 (529)
Q Consensus 123 L~-----KP~~~eeL~~~l~~v 139 (529)
.+ +.-++.+....+...
T Consensus 217 av~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 217 VVVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp EESHHHHTCSSHHHHHHHHHHH
T ss_pred EEeHHHhCCCCHHHHHHHHHHH
Confidence 65 333444444444433
No 125
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=84.62 E-value=6.9 Score=39.86 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=72.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE---CQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~---~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
.+|+.|+|.|+...+.|..+|.. ..|++..+++.+.+.+.+++.+ +|++++|-.+.... .......++
T Consensus 21 ~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-------~~~~~~~~v 91 (373)
T 3fkq_A 21 KIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-------SEFKRNCGL 91 (373)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-------GGGCSSCEE
T ss_pred eEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-------hhhcccCcE
Confidence 57899999999999999999964 4678999999999999998765 99999998775421 112233567
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
++++.....+ ...-...+.|--+.+++...+....
T Consensus 92 ~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 92 AYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp EEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 7776543221 1112246778778888876655544
No 126
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=82.61 E-value=7.3 Score=36.39 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=66.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhc
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMPD-MDG-FKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a~---sa~eALe~L~e~~~~pDLVIlDi~MPd-mdG-leLL~~Ir~ 93 (529)
.-+||+. |-+..=...+..+|+..||+|.... ..++.++.+++.+ ||+|.+-..|.. +.. -++++.++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 3578888 6777778889999999999998543 4677777777664 999999887663 333 335555553
Q ss_pred C---CCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 94 E---MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 94 ~---~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
. +++||++=-...+.+.. -+.||+.|..-
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~d 197 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPD 197 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECSS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEECC
Confidence 2 34776665544554333 45799877543
No 127
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=80.32 E-value=4.4 Score=38.60 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=66.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEE--ecCCCC-CCH-HHHHHHH
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVIS--DVYMPD-MDG-FKLLELV 91 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIl--Di~MPd-mdG-leLL~~I 91 (529)
.-||++. |-+..=..++..+|+..||+|+.. -..++.++.+.+.+ ||+|.+ -..|.. +.. -++++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4577777 667777788888999999998854 35677778888765 999999 776652 332 3355555
Q ss_pred hcC-C--CCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 92 GLE-M--DLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 92 r~~-~--~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+.. . ++||++=-+....+. +-+.||+.|-.-
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~d 203 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAEN 203 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCSS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEECC
Confidence 433 3 577665544455443 345699888643
No 128
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=79.15 E-value=13 Score=34.73 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=51.9
Q ss_pred CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcC
Q 009670 47 QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHG 118 (529)
Q Consensus 47 gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~G 118 (529)
+..+. .+.+..++.+.... ..|.|+++-..+. .-|+++++.++...++|||+..+- +.+.+.++++.|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcC
Confidence 44433 56788888776643 4899999765432 136777776654457899988777 788899999999
Q ss_pred CcEeEe
Q 009670 119 ACDYLL 124 (529)
Q Consensus 119 A~DYL~ 124 (529)
|+.+..
T Consensus 186 a~gv~v 191 (221)
T 1yad_A 186 ADGIAV 191 (221)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998754
No 129
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=79.09 E-value=4.1 Score=40.48 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=63.5
Q ss_pred HHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-----HHHHHHHhc-CCC-CcEEEEecCCCHHHHH
Q 009670 42 FLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPDMDG-----FKLLELVGL-EMD-LPVVMLSAYSDTKLVM 112 (529)
Q Consensus 42 ~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdG-----leLL~~Ir~-~~~-ipVIvlTa~~d~e~v~ 112 (529)
.|.+.||.|. +..+...|.++.+ . .+++| +.+-.|-..| .++++.++. ..+ +|||+=.+-...+.+.
T Consensus 119 ~L~k~Gf~Vlpy~~~D~~~ak~l~~-~--G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa 194 (268)
T 2htm_A 119 RLIEEDFLVLPYMGPDLVLAKRLAA-L--GTATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAA 194 (268)
T ss_dssp HHHHTTCEECCEECSCHHHHHHHHH-H--TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHH
T ss_pred HHHHCCCEEeeccCCCHHHHHHHHh-c--CCCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHH
Confidence 3445599877 3456655554443 3 37766 5554442222 456777765 677 9999988889999999
Q ss_pred HHHhcCCcEeEeC-----CCCHHHHHHHHHHHHH
Q 009670 113 KGINHGACDYLLK-----PVRMEELKNTWQHVIR 141 (529)
Q Consensus 113 ~al~~GA~DYL~K-----P~~~eeL~~~l~~vlr 141 (529)
.++++||+..++- --++..+...+...+.
T Consensus 195 ~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 195 EVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 9999999998754 3345555555555544
No 130
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=79.00 E-value=16 Score=37.62 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=66.9
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 009670 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (529)
Q Consensus 23 ~mrVLIVD----Dd~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (529)
+..+++|| +.+...+.++.+-+.. +..|. .+.+.++|.++.+. ..|.|.+.+. |+ ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 56678775 3455555566555554 55554 47889999887765 3788888421 21 23
Q ss_pred HHHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 84 GFKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 84 GleLL~~Ir---~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.++++..+. ...++|||..-+-.+...+.+++.+||+...+=
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 455554442 245799999888888999999999999887653
No 131
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=78.81 E-value=20 Score=35.35 Aligned_cols=87 Identities=10% Similarity=-0.038 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC---CCCCCHHHHHHHHh-cCC-CCcEEEEecCCCH
Q 009670 35 CLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY---MPDMDGFKLLELVG-LEM-DLPVVMLSAYSDT 108 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~---MPdmdGleLL~~Ir-~~~-~ipVIvlTa~~d~ 108 (529)
....+....+..|..+. .+.+.+++...++. .+|+|-+.-. ... -+++.++.+. ..+ ++|||..++-.+.
T Consensus 150 ~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~-~dl~~~~~l~~~v~~~~pvVaegGI~t~ 225 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLD-VDRDCFARIAPGLPSSVIRIAESGVRGT 225 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCC-BCTTHHHHHGGGSCTTSEEEEESCCCSH
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccc-cCHHHHHHHHHhCcccCEEEEECCCCCH
Confidence 34444455556788755 66888887776654 3788777532 111 1345555443 333 7899999999999
Q ss_pred HHHHHHHhcCCcEeEeC
Q 009670 109 KLVMKGINHGACDYLLK 125 (529)
Q Consensus 109 e~v~~al~~GA~DYL~K 125 (529)
+.+.++.++||+.+++-
T Consensus 226 edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 226 ADLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999874
No 132
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=78.31 E-value=17 Score=33.35 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=49.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+.+..++.+.... .+|.|+++-..|. ..+++.++.++...++||++..+-. .+.+.++++.||+.+..
T Consensus 114 ~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 45777777665443 3899998865553 3478888776544578998877766 77788888999998754
No 133
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=76.62 E-value=0.99 Score=45.07 Aligned_cols=52 Identities=8% Similarity=-0.164 Sum_probs=32.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHH-HhhhhhhhhhhhhccCCCCchhhhhhhhhhcCCCCccCCCCccC
Q 009670 225 MNVEGLTRENVASHLQKFRLSLK-RLGNKTLEAGMVASVGSKDSSYLRIGALDGFGGSHSVNSPGRLS 291 (529)
Q Consensus 225 mk~~~LT~eEvAshLqkyr~~Lk-~~~~~~~~~~g~~~l~~sd~~~l~~aa~ial~hhe~~dGsG~~~ 291 (529)
.++..++.+| ++. |+ .|.. .|..++....-| .........|||+|+|++.++
T Consensus 176 ~~~~~l~~~E-------~~~-~~~~H~~-----iG~~ll~~w~lp--~~i~~~I~~HHe~~~~~~~~~ 228 (305)
T 3hc1_A 176 EEKITFGQAE-------ERL-FGTSHCE-----VGFALAKRWSLN--EFICDTILYHHDIEAVPYKQA 228 (305)
T ss_dssp HHCCCHHHHH-------HHH-HSSCHHH-----HHHHHHHHTTCC--HHHHHHHHHTTCGGGCSSSCC
T ss_pred hcCCCHHHHH-------HHH-HCCCHHH-----HHHHHHHHcCCC--HHHHHHHHHhCChhhcccccc
Confidence 3566677666 333 54 5666 777776544333 444456678999999987433
No 134
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=76.57 E-value=6.1 Score=37.63 Aligned_cols=54 Identities=13% Similarity=0.208 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCCcEEEEecCCC------HHHHHHHHhcCCcEeEeCCCCHHHHHHHHHH
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSD------TKLVMKGINHGACDYLLKPVRMEELKNTWQH 138 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d------~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~ 138 (529)
+++++.++...++||++++.... .+.+..++++||+..+.-....++....++.
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~ 128 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEI 128 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHH
Confidence 67777777666789998875333 4678888999999999866666554444433
No 135
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=76.48 E-value=16 Score=38.28 Aligned_cols=99 Identities=11% Similarity=0.197 Sum_probs=65.2
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecC-------C----CCCCHH
Q 009670 23 GMRVLAVD----DDQTCLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVY-------M----PDMDGF 85 (529)
Q Consensus 23 ~mrVLIVD----Dd~~v~~~L~~~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~-------M----PdmdGl 85 (529)
+..++++| +...+.+.++.+-+..+..|. .+.+.++|..+++. .+|.|++... - .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 46678775 233445555554444466655 57888888887754 4898887321 0 012345
Q ss_pred HHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 86 KLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 86 eLL~~Ir---~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.++..+. ...++|||.--+-.+...+.+++.+||+...+
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 5555443 23579999988888999999999999998765
No 136
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=74.58 E-value=39 Score=33.61 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=57.8
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcCCCCcEEEEecCCCHHHHH
Q 009670 41 KFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-------MDGFKLLELVGLEMDLPVVMLSAYSDTKLVM 112 (529)
Q Consensus 41 ~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~ 112 (529)
+.+++.+..+. .+.+.+++...... .+|.|+++-.-++ ...+++++.++...++|||+-.+-.+.+.+.
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~ 188 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLV 188 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 33444566655 46777887766543 3888888532221 2467788877766689999998888888999
Q ss_pred HHHhcCCcEeEe
Q 009670 113 KGINHGACDYLL 124 (529)
Q Consensus 113 ~al~~GA~DYL~ 124 (529)
+++..||+...+
T Consensus 189 ~al~~GAdgV~v 200 (328)
T 2gjl_A 189 AALALGADAINM 200 (328)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999998765
No 137
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=74.34 E-value=27 Score=32.11 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=64.8
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEecCCC----CCCHHHHHHHHh
Q 009670 23 GMRVLAVDDDQ--TCLKILEKFLRECQYEVTVT----NRAITALKMLRENRNNFDLVISDVYMP----DMDGFKLLELVG 92 (529)
Q Consensus 23 ~mrVLIVDDd~--~v~~~L~~~Le~~gy~V~~a----~sa~eALe~L~e~~~~pDLVIlDi~MP----dmdGleLL~~Ir 92 (529)
|...+++-+.+ .....+.+.+++.|..+... .+..+.++.+.+. ..|.|-++.... ...+++.++.++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~--g~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA--GADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH--TCCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc--CCCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 34455555543 33344555566667776542 3443433433333 378777652110 013567777776
Q ss_pred cC-CCCcEEEEecCCCHHHHHHHHhcCCcEeEe-----CCCCHHHHHHHHHHHH
Q 009670 93 LE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVI 140 (529)
Q Consensus 93 ~~-~~ipVIvlTa~~d~e~v~~al~~GA~DYL~-----KP~~~eeL~~~l~~vl 140 (529)
.. +++||++-.+-. .+.+.+++++||+.++. +.-++.+....++..+
T Consensus 155 ~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~ 207 (211)
T 3f4w_A 155 KVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVL 207 (211)
T ss_dssp HHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHH
T ss_pred HHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHH
Confidence 44 578888766664 78888999999998755 3444444444444333
No 138
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=74.17 E-value=27 Score=39.54 Aligned_cols=117 Identities=11% Similarity=0.070 Sum_probs=75.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLL~~Ir~ 93 (529)
..||+|. |.+..=..++..+|+..||+|... ...++.++...+.. +|+|.+-..|.. +. .-++++.++.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 3577776 445555567788889999999854 35788888887764 999888776653 22 3345555553
Q ss_pred C-C-CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 94 E-M-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 94 ~-~-~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
. . ++ +|++-+..-......+.+.|++.|+..--+..+....+...+..
T Consensus 682 ~G~~dv-~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~ 731 (762)
T 2xij_A 682 LGRPDI-LVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEK 731 (762)
T ss_dssp TTCTTS-EEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCC-EEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHH
Confidence 2 2 33 44455422222334467899999998556777777776666643
No 139
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=73.41 E-value=20 Score=40.47 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=76.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL 93 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLL~~Ir~ 93 (529)
..||+|. |.+..=..++..+|+..||+|... ...++.++...+.. +|+|.+-..|.. +. .-++++.++.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 3577776 555555667778888899999854 35788888887764 999988776653 22 3445565653
Q ss_pred C-C-CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 94 E-M-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 94 ~-~-~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
. . ++ .|++-+..-......+.+.|++.|+.---+..++...+...++.
T Consensus 674 ~G~~~i-~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 674 LGRPDI-LITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp TTCTTS-EEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCC-EEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 2 2 33 44555533233344567899999988667777777766665543
No 140
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=71.56 E-value=14 Score=41.11 Aligned_cols=115 Identities=10% Similarity=0.107 Sum_probs=73.8
Q ss_pred ccEEEEE----eCCHHHHHHH----HHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC----CCHHH-
Q 009670 23 GMRVLAV----DDDQTCLKIL----EKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD----MDGFK- 86 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L----~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd----mdGle- 86 (529)
..|||+. |-+..=...+ ..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..|.. +..+.
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 4688887 3343333222 46788899999844 46788888888765 999999988875 33332
Q ss_pred HHHHHhcC-C--CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 87 LLELVGLE-M--DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 87 LL~~Ir~~-~--~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+++.++.. . .++||+=-+....+. +.+.||+.|..-.....++...|...++.
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 44555432 2 245444333344332 34899999988778888777766655544
No 141
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=71.19 E-value=6.2 Score=38.64 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=51.9
Q ss_pred CCeEE--EECCHHHHHHHHHhcCCCceEEEE-ecCCC---CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCc
Q 009670 47 QYEVT--VTNRAITALKMLRENRNNFDLVIS-DVYMP---DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGAC 120 (529)
Q Consensus 47 gy~V~--~a~sa~eALe~L~e~~~~pDLVIl-Di~MP---dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~ 120 (529)
|+.+. .+.+.+++.++.+.. .|.|+. -.... +..+.+++++++...++|||+..+-.+.+.+.+++++||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~g---ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEELG---VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHHT---CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHhC---CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 77655 445666666555432 566533 10011 1234778887776678999999999999999999999999
Q ss_pred EeEeC
Q 009670 121 DYLLK 125 (529)
Q Consensus 121 DYL~K 125 (529)
..++=
T Consensus 203 gViVG 207 (264)
T 1xm3_A 203 GVLLN 207 (264)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98664
No 142
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=70.99 E-value=46 Score=29.30 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=71.0
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQ-TCLKILEKFLRECQYEVTV-TN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~-~v~~~L~~~Le~~gy~V~~-a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
.++++|+.+.+ .....++.++++.+ .|.. .. +..+..+++. ..|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 57888887654 35566777777766 5555 33 4446666654 37888885443 334677777654 3467
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
||+. .. ....+.+ .|..+++..|-+.++|..++..++.
T Consensus 142 vI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 6654 22 2344555 7888999999999999999999876
No 143
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=70.28 E-value=22 Score=36.53 Aligned_cols=99 Identities=11% Similarity=0.195 Sum_probs=63.4
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCCHH
Q 009670 23 GMRVLAVD----DDQTCLKILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYM-----------PDMDGF 85 (529)
Q Consensus 23 ~mrVLIVD----Dd~~v~~~L~~~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~M-----------PdmdGl 85 (529)
+..++++| +...+.+.++.+-+..+..|. .+.+.++|..+++. ..|.|.+-+.- .+...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 44566664 334455556655555566655 56788888777654 37888873210 012334
Q ss_pred HHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 86 KLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 86 eLL~~Ir---~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+.+..+. ...++|||.--+-.+...+.+++.+||+...+
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 5444332 23468999888888899999999999998765
No 144
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=70.17 E-value=12 Score=36.42 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=48.6
Q ss_pred CceEEEEecCCCC--CC--------------------HHHHHHHHhcCC-CCcEEEEecCCC------HHHHHHHHhcCC
Q 009670 69 NFDLVISDVYMPD--MD--------------------GFKLLELVGLEM-DLPVVMLSAYSD------TKLVMKGINHGA 119 (529)
Q Consensus 69 ~pDLVIlDi~MPd--md--------------------GleLL~~Ir~~~-~ipVIvlTa~~d------~e~v~~al~~GA 119 (529)
..|+|.+++-..+ .| .+++++.++... ++|+++++-... ...+..+.++|+
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~ 123 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 4898888774332 22 345566666544 899999854321 345677889999
Q ss_pred cEeEeCCCCHHHHHHHHHHHH
Q 009670 120 CDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 120 ~DYL~KP~~~eeL~~~l~~vl 140 (529)
+.++.-.+..+++...+..+.
T Consensus 124 dgvii~dl~~ee~~~~~~~~~ 144 (262)
T 2ekc_A 124 DGFIVPDLPPEEAEELKAVMK 144 (262)
T ss_dssp CEEECTTCCHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHH
Confidence 999997788887666665543
No 145
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=69.51 E-value=10 Score=37.10 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=49.8
Q ss_pred CceEEEEecCCC--CCC--------------------HHHHHHHHhcC-CCCcEEEEecCC------CHHHHHHHHhcCC
Q 009670 69 NFDLVISDVYMP--DMD--------------------GFKLLELVGLE-MDLPVVMLSAYS------DTKLVMKGINHGA 119 (529)
Q Consensus 69 ~pDLVIlDi~MP--dmd--------------------GleLL~~Ir~~-~~ipVIvlTa~~------d~e~v~~al~~GA 119 (529)
..|+|-+|+-.. -+| ++++++.++.. .++||++++-.. ....+..+.++||
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 488888887332 233 34566767655 789998886322 2466778889999
Q ss_pred cEeEeCCCCHHHHHHHHHHHHH
Q 009670 120 CDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 120 ~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+.++.-.+..+++...++.+.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~~~ 145 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAALR 145 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHHHH
Confidence 9999977887776666555533
No 146
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=68.89 E-value=20 Score=35.31 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=73.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCC-HH
Q 009670 23 GMRVLAV----DDDQTCLKILEKF--------LREC-QYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDMD-GF 85 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~--------Le~~-gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdmd-Gl 85 (529)
..+|++. |-+..=...+..+ |+.. ||+|+.. -..++.++.+++.+ +|+|.+-..|...+ -+
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccchH
Confidence 4567665 5566666667767 8888 9998743 46788888888765 99999998887522 22
Q ss_pred H----HHHHHhcC---CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 86 K----LLELVGLE---MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 86 e----LL~~Ir~~---~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+ +++.++.. .+++|| +-+..-. ...+.+.|++.|..--....++...+...+.
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vi-vGG~~~~--~~~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLL-CGGPRIN--NEIAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEE-EECTTCC--HHHHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEE-EECCcCC--HHHHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 2 44455432 225554 4444322 2235678999888766777777776655443
No 147
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=67.79 E-value=7.6 Score=35.03 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=32.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE--CQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~--~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
+.||++||-|+.. .+..++.. .++.+..+.. ....+.+......+|+||+|.
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 5799999988653 23444432 3566665544 344444444444699999997
No 148
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=66.75 E-value=38 Score=33.62 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=64.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH-hcCCCCcEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV-GLEMDLPVV 100 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I-r~~~~ipVI 100 (529)
..+.|-+.-.++.....+..+|....|.++.+.+..+.++.++.+++.+|++|+... +..-..+...+ ....-+|+|
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP~v 85 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVPAI 85 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCCEE
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCccccEE
Confidence 457788888999999999999987889999999999999999998889999998761 22345555555 455678998
Q ss_pred EEecC
Q 009670 101 MLSAY 105 (529)
Q Consensus 101 vlTa~ 105 (529)
++...
T Consensus 86 il~~~ 90 (289)
T 1r8j_A 86 VVGDR 90 (289)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 88553
No 149
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=66.04 E-value=23 Score=34.93 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=64.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a--~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.++++|+.+.+. ..++..+++..-.|... -+..+..+++.. .|++|+-..-.+.-|..+++.+.. .+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a~--G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMAA--GTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHHH--TCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHHc--CCCEE
Confidence 466677766554 44444443321123322 233444555543 567776532123336667775532 46777
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
.. .. ....+.+..|..+|+.+|-+.++|..++..++..
T Consensus 312 ~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 312 AS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred Ee-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 43 22 4566778888899999999999999999988753
No 150
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=65.24 E-value=50 Score=35.39 Aligned_cols=100 Identities=10% Similarity=0.129 Sum_probs=64.5
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC-----------CCH
Q 009670 23 GMRVLAVDD----DQTCLKILEKFLRECQ-YEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD-----------MDG 84 (529)
Q Consensus 23 ~mrVLIVDD----d~~v~~~L~~~Le~~g-y~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-----------mdG 84 (529)
+..+++||. ...+.+.++.+-+..+ ..+. .+.+.+.|..+.+. ..|.|++.+.--. ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 567788873 3344455555555543 4444 56788888777764 3788876432111 223
Q ss_pred HHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 85 FKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 85 leLL~~I---r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+..+..+ .....+|||.--+-.+...+.+|+.+||+..++=
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 4444332 2334699999999999999999999999988763
No 151
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=64.87 E-value=31 Score=31.94 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=45.7
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCC--------CCCHHHHHHHHhcCCC-CcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 53 TNRAITALKMLRENRNNFDLVISDVYMP--------DMDGFKLLELVGLEMD-LPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 53 a~sa~eALe~L~e~~~~pDLVIlDi~MP--------dmdGleLL~~Ir~~~~-ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
+.+..++.+.... .+|.|++....| ...|++.++.++.... +||++..+-. .+.+.++++.||+.+.
T Consensus 123 ~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 123 AHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVS 198 (227)
T ss_dssp ECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEE
T ss_pred cCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 5777776655543 389888632222 1236788877764445 8998887766 6777788899998875
Q ss_pred e
Q 009670 124 L 124 (529)
Q Consensus 124 ~ 124 (529)
+
T Consensus 199 v 199 (227)
T 2tps_A 199 M 199 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 152
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=64.73 E-value=59 Score=32.08 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=71.7
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEEE-C--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQ-TCLKILEKFLRECQYEVTVT-N--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~-~v~~~L~~~Le~~gy~V~~a-~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
.++++|+.+.+ .....++.+.++.+ +++.. . +.++..+++. ..|++++-... +.-|+.+++.+. ..+|
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~----~adv~v~ps~~-e~~~~~~~EAma--~G~P 356 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 356 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECBSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH----HCCEEEeCCCC-CCccHHHHHHHH--CCCC
Confidence 57888887654 34466777777777 55543 3 4555666664 26888875544 345667777654 3568
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
||.. ... ...+.++.| .+++..|.+.++|.+++..++.
T Consensus 357 vi~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 357 PIAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eEEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 7753 332 344556667 9999999999999999999987
No 153
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=64.18 E-value=49 Score=33.12 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=57.6
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-C----CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009670 41 KFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-D----MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 41 ~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP-d----mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~a 114 (529)
+.++..+..|. .+.+.++|..+.+. .+|.|+++-.-. + ...+++++.++...++|||+-.+-.+.+.+.++
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~a 194 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAA 194 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 33445566655 45777887766543 378888864222 1 246778877665557999999999889999999
Q ss_pred HhcCCcEeEe
Q 009670 115 INHGACDYLL 124 (529)
Q Consensus 115 l~~GA~DYL~ 124 (529)
+.+||+...+
T Consensus 195 l~~GA~gV~v 204 (326)
T 3bo9_A 195 FALGAEAVQM 204 (326)
T ss_dssp HHHTCSEEEE
T ss_pred HHhCCCEEEe
Confidence 9999998865
No 154
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=63.79 E-value=30 Score=31.85 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=59.1
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHh
Q 009670 41 KFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-DMDGFKLLELVGLEM--DLPVVMLSAYSDTKLVMKGIN 116 (529)
Q Consensus 41 ~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP-dmdGleLL~~Ir~~~--~ipVIvlTa~~d~e~v~~al~ 116 (529)
+..+..|..+. .+.+..++.+..+. .+|.|.+ .| +..|++.++.++... ++|||+..+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 34445565533 46888888766543 4898886 22 123577777665433 58999888776 678888899
Q ss_pred cCCcEeEeCC--CCH----HHHHHHHHHHH
Q 009670 117 HGACDYLLKP--VRM----EELKNTWQHVI 140 (529)
Q Consensus 117 ~GA~DYL~KP--~~~----eeL~~~l~~vl 140 (529)
+||+.+..=- +.. ++....++.+.
T Consensus 168 ~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~ 197 (212)
T 2v82_A 168 AGCAGAGLGSDLYRAGQSVERTAQQAAAFV 197 (212)
T ss_dssp HTCSEEEECTTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCEEEEChHHhCCCCCHHHHHHHHHHHH
Confidence 9999987542 222 45555555443
No 155
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=63.57 E-value=21 Score=30.69 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=47.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHh-cCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVG-LEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLL~~Ir-~~~~ipV 99 (529)
+++|+++|.++...+.++ ..|+.+.... .-.+.++.+.- ...|+||+-+ |+. .-..++..++ ..+.++|
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~--~~~~~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL--ECAKWLILTI--PNGYEAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG--GGCSEEEECC--SCHHHHHHHHHHHHHHCSSSEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc--ccCCEEEEEC--CChHHHHHHHHHHHHHCCCCeE
Confidence 466777777766544333 3466554321 12233332211 1367777654 321 1222334343 4567777
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
|+... +.+......++||+..+.
T Consensus 102 iar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 102 IARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEEC--CHHHHHHHHHCCCCEEEC
Confidence 77654 345556666889886664
No 156
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=62.88 E-value=69 Score=29.66 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=41.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
.++|+++-..+......+.++.+.+.++. ...+.+++++..++....+|+||+
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 46899999999999999998887666665 457788888887764236899886
No 157
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=61.92 E-value=15 Score=36.26 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=40.3
Q ss_pred HHHHHHHhcC-CCCcEEEEecCC------CHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 85 FKLLELVGLE-MDLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 85 leLL~~Ir~~-~~ipVIvlTa~~------d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
+++++.+|.. .++||++++-.. -...+.++.++|++..++-.+..++....+..+.
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~ 145 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAK 145 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHH
Confidence 5666666654 789999997533 2456788889999999997788887655555443
No 158
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=61.24 E-value=57 Score=33.06 Aligned_cols=77 Identities=18% Similarity=0.105 Sum_probs=54.5
Q ss_pred hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC---------CCC-------CCHHHHHHHHhcCCCCcEEEEecCCC
Q 009670 45 ECQYEVT-VTNRAITALKMLRENRNNFDLVISDVY---------MPD-------MDGFKLLELVGLEMDLPVVMLSAYSD 107 (529)
Q Consensus 45 ~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~---------MPd-------mdGleLL~~Ir~~~~ipVIvlTa~~d 107 (529)
..+..|. .+.+.+++....+. .+|.|+++-. .+. ...+++++.++...++|||+.-+-.+
T Consensus 143 ~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~ 219 (369)
T 3bw2_A 143 RAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMR 219 (369)
T ss_dssp HTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCS
T ss_pred HCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCC
Confidence 3466544 56778877665543 4898888531 110 23488888776556899998888889
Q ss_pred HHHHHHHHhcCCcEeEe
Q 009670 108 TKLVMKGINHGACDYLL 124 (529)
Q Consensus 108 ~e~v~~al~~GA~DYL~ 124 (529)
.+.+.+++..||+...+
T Consensus 220 ~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 220 GGQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999987754
No 159
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=60.73 E-value=11 Score=31.70 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=47.0
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCC
Q 009670 21 PIGMRVLAVDDD----QTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM 95 (529)
Q Consensus 21 p~~mrVLIVDDd----~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~ 95 (529)
|+.||||+|-.. ..+...+++.+++.|+++. .+.+..++...+ ..+|+||+-..+... ++-++..-...
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~~ 75 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKPK 75 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhccc
Confidence 556899998653 2666778888877777543 233333333332 248999998766542 33333221234
Q ss_pred CCcEEEEec
Q 009670 96 DLPVVMLSA 104 (529)
Q Consensus 96 ~ipVIvlTa 104 (529)
++||+++..
T Consensus 76 ~~pv~~I~~ 84 (109)
T 2l2q_A 76 GIPIEIINT 84 (109)
T ss_dssp TCCEEECCH
T ss_pred CCCEEEECh
Confidence 689998875
No 160
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=60.69 E-value=66 Score=28.13 Aligned_cols=107 Identities=10% Similarity=0.133 Sum_probs=66.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--h--C--CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLR--E--C--QYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le--~--~--gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ 96 (529)
.++++|+.+.+.. ..++.+++ . . .+.+.-.-+.++..++++. .|++|+-.. .+.-|+.+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4778888654432 23333333 2 1 2233333455666667664 578876333 3334667777654 35
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|||+.. .....+.++.|..+++. +.+.++|.+++..++..
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 7887642 23456667778889999 99999999999999864
No 161
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=60.66 E-value=3.7 Score=40.45 Aligned_cols=78 Identities=26% Similarity=0.316 Sum_probs=47.2
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHhcCCCceEEEEecCCC-CC--CHHHHHH-HHhcC
Q 009670 23 GMRVLAVDDD--QTCLKILEKFLRECQYEVTVTNRAIT--ALKMLRENRNNFDLVISDVYMP-DM--DGFKLLE-LVGLE 94 (529)
Q Consensus 23 ~mrVLIVDDd--~~v~~~L~~~Le~~gy~V~~a~sa~e--ALe~L~e~~~~pDLVIlDi~MP-dm--dGleLL~-~Ir~~ 94 (529)
+.|||||+++ +.....+...|+..||+|.......- -.+.|. .+|+||++-... .. +-++.++ .++.
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d~~~~~l~~~~~~~L~~yV~~- 78 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSDYPAERMTAQAIDQLVTMVKA- 78 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEESCCGGGBCHHHHHHHHHHHHT-
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcCCccccCCHHHHHHHHHHHHh-
Confidence 3589999988 67888899999999999887653321 123333 389998863222 12 2333333 4442
Q ss_pred CCCcEEEEecCC
Q 009670 95 MDLPVVMLSAYS 106 (529)
Q Consensus 95 ~~ipVIvlTa~~ 106 (529)
.--+|++.+..
T Consensus 79 -GGgLi~~gG~~ 89 (259)
T 3rht_A 79 -GCGLVMLGGWE 89 (259)
T ss_dssp -TCEEEEECSTT
T ss_pred -CCeEEEecCcc
Confidence 34577776543
No 162
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=60.19 E-value=1.3e+02 Score=30.89 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=61.0
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCC------------C
Q 009670 23 GMRVLAVDD----DQTCLKILEKFLREC-QYEVTV--TNRAITALKMLRENRNNFDLVISDVYMPDM------------D 83 (529)
Q Consensus 23 ~mrVLIVDD----d~~v~~~L~~~Le~~-gy~V~~--a~sa~eALe~L~e~~~~pDLVIlDi~MPdm------------d 83 (529)
+..++.+|- ...+.+.++.+-+.. +..|.. +.+.++|..+.+. ..|.|.+... |+. .
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 456788862 233334444333322 555553 7888888887754 4898888543 221 2
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.++.+..+..... |||.--+-.+...+.+++.+||+...+
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3444443332222 899888888999999999999988765
No 163
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=60.14 E-value=63 Score=34.30 Aligned_cols=99 Identities=13% Similarity=0.200 Sum_probs=62.4
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CCC
Q 009670 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVY--------------MPD 81 (529)
Q Consensus 23 ~mrVLIVD----Dd~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~--------------MPd 81 (529)
+..++.++ +.....+.++.+-+.. ++.|. .+.+.++|..+.+.. .|.|.+... +|.
T Consensus 267 G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~ 343 (514)
T 1jcn_A 267 GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQ 343 (514)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCH
T ss_pred CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccc
Confidence 34455552 2233445555554444 55554 367777777766543 777776331 111
Q ss_pred CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 82 mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
...+.+++.+....++|||...+-.+...+.+++.+||+...+
T Consensus 344 ~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 344 GTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 2235566666555679999999999999999999999987644
No 164
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=59.63 E-value=48 Score=28.10 Aligned_cols=76 Identities=22% Similarity=0.181 Sum_probs=47.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhc--CCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLREN--RNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~--~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.|||.|+-| +..... ++-.|+++..+.+.+++.+.+++. ++++.+|++.-.+-+. --+.++..+.....|+|
T Consensus 3 ~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 489999999 443322 334688888888888776666542 2368899998776552 22344444434557866
Q ss_pred EEec
Q 009670 101 MLSA 104 (529)
Q Consensus 101 vlTa 104 (529)
+.-.
T Consensus 77 l~IP 80 (109)
T 2d00_A 77 LPIA 80 (109)
T ss_dssp EEES
T ss_pred EEEC
Confidence 5543
No 165
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=59.56 E-value=50 Score=33.01 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=55.4
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh
Q 009670 43 LRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGIN 116 (529)
Q Consensus 43 Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~ 116 (529)
+++.++.+. .+.+.++|..+.+. .+|.|+++-.-. ....+++++.++...++|||+..+-.+.+.+.+++.
T Consensus 106 l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 106 FHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 344566655 45777776655542 388888863211 134578888776666899999988888999999999
Q ss_pred cCCcEeEe
Q 009670 117 HGACDYLL 124 (529)
Q Consensus 117 ~GA~DYL~ 124 (529)
.||+...+
T Consensus 183 ~GAdgV~v 190 (332)
T 2z6i_A 183 LGAEAVQV 190 (332)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEe
Confidence 99988654
No 166
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=59.50 E-value=64 Score=31.81 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC---CCCHHHHHH-HHhcC-CCCcEEEEecCCCHH
Q 009670 36 LKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP---DMDGFKLLE-LVGLE-MDLPVVMLSAYSDTK 109 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP---dmdGleLL~-~Ir~~-~~ipVIvlTa~~d~e 109 (529)
...+....+..|.++. .+.+.+|+...+.. .+|+|=+.-.-. ..| ++... +++.. .++++|.-++-...+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 3344444556788855 67888888766642 478775542211 112 33333 33333 368999999999999
Q ss_pred HHHHHHhcCCcEeEeC
Q 009670 110 LVMKGINHGACDYLLK 125 (529)
Q Consensus 110 ~v~~al~~GA~DYL~K 125 (529)
.+.++.++||+.+|+-
T Consensus 234 dv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHTTTCCEEEEC
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999874
No 167
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=59.44 E-value=67 Score=34.16 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=64.8
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 009670 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (529)
Q Consensus 23 ~mrVLIVD----Dd~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (529)
+..++++| ..+.+.+.++.+-+.. +..|. .+.+.++|..+++. ..|.|.+-+. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 45677776 3445556666655554 44444 36788888777654 3788887321 11 22
Q ss_pred HHHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 84 GFKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 84 GleLL~~Ir---~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.++++..+. ...++|||.-.+-.....+.+++.+||+...+=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 344454332 234799999999999999999999999987663
No 168
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=58.92 E-value=47 Score=32.15 Aligned_cols=106 Identities=18% Similarity=0.331 Sum_probs=64.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.++++|+.+.+. ..++.++++.+. .|......++..+++.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH--CCCCEE
Confidence 357777766442 345555554443 35544443444555543 5677764432 334667777553 246888
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeC-CCCHHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLK-PVRMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~K-P~~~eeL~~~l~~vlr 141 (529)
......- .+.+..|..+++.. |.+.++|.+++..++.
T Consensus 299 ~~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 6543332 33455677899997 8999999999999875
No 169
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=58.88 E-value=60 Score=30.48 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCCC-CH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC------C
Q 009670 57 ITALKMLRENRNNFD-LVISDVYMPDM-DG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK------P 126 (529)
Q Consensus 57 ~eALe~L~e~~~~pD-LVIlDi~MPdm-dG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K------P 126 (529)
.+..+.+.+. .++ +++.+..-.++ .| +++++.++...++|||...+-...+.+.++++.||+..+.= |
T Consensus 155 ~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVEL--GAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHH--TCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHc--CCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 4444444433 255 55566542221 23 88888877666899999999999899999999999998653 4
Q ss_pred CCHHHHHHHH
Q 009670 127 VRMEELKNTW 136 (529)
Q Consensus 127 ~~~eeL~~~l 136 (529)
+++.++.+.+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5666655543
No 170
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=58.77 E-value=80 Score=31.43 Aligned_cols=108 Identities=11% Similarity=0.178 Sum_probs=65.0
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCC
Q 009670 23 GMRVLAVDDD---QTCLKILEKFLRECQY--EVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM 95 (529)
Q Consensus 23 ~mrVLIVDDd---~~v~~~L~~~Le~~gy--~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~ 95 (529)
.++++|+.+. ......++.++++.+. .|.... +..+..+++.. .|++|+-... +.-|+.+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSFN-ESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECccc-cCCchHHHHHHH--c
Confidence 4667777651 1233455555555443 244433 33566666653 5677764332 334666777553 3
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.+|||+. .... ..+.+..|.++++..|.+.++|.+++..++.
T Consensus 349 G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAA-RVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEE-SCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEec-CCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 5788764 3332 3455677888999999999999999998875
No 171
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=58.61 E-value=42 Score=31.01 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred HHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecC-----CCCC--C--HHHHHHHHhcCCCCcEEEEec
Q 009670 36 LKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVY-----MPDM--D--GFKLLELVGLEMDLPVVMLSA 104 (529)
Q Consensus 36 ~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~-----MPdm--d--GleLL~~Ir~~~~ipVIvlTa 104 (529)
.+.++..-+.. +..+. .+.+..++.++.+. ..|+|.+-.. ..+. . ++++++.++...++|||...+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecC
Confidence 34444433332 55543 55677787765443 3787754321 0111 2 456677665555799999988
Q ss_pred CCCHHHHHHHHhcCCcEeEeC
Q 009670 105 YSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 105 ~~d~e~v~~al~~GA~DYL~K 125 (529)
-.+.+.+.++++.||+.++.=
T Consensus 184 I~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 889999999999999988764
No 172
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=58.17 E-value=73 Score=32.35 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=63.6
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 009670 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (529)
Q Consensus 23 ~mrVLIVD----Dd~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (529)
+..++.++ +...+.+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|++... ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45666675 3344555555544444 55544 56788888877764 3888866432 21 12
Q ss_pred HHHHHHHH---hcCCCCcEEEEecCCCHHHHHHHHhcCCcEe-EeCCC
Q 009670 84 GFKLLELV---GLEMDLPVVMLSAYSDTKLVMKGINHGACDY-LLKPV 127 (529)
Q Consensus 84 GleLL~~I---r~~~~ipVIvlTa~~d~e~v~~al~~GA~DY-L~KP~ 127 (529)
-+..+..+ ....++|||.-.+-.+...+.+++.+||+.. +-++|
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 23333322 1224689999889999999999999999975 44554
No 173
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=57.96 E-value=49 Score=31.18 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=49.9
Q ss_pred HHHHHHhCCCeEEEE-C--CHHHHHHHHHhcCCCce-EEEEecCCCCCC---------HHHHHHHHhcCCCCcEEEEecC
Q 009670 39 LEKFLRECQYEVTVT-N--RAITALKMLRENRNNFD-LVISDVYMPDMD---------GFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 39 L~~~Le~~gy~V~~a-~--sa~eALe~L~e~~~~pD-LVIlDi~MPdmd---------GleLL~~Ir~~~~ipVIvlTa~ 105 (529)
+.+.+++.|..+... . +..+.++.+... .| +|.+ +..++.. +++.++.++...++||++-.+-
T Consensus 125 ~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI 200 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGV 200 (248)
T ss_dssp HHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCC
T ss_pred HHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeec
Confidence 334444456554432 2 445666655543 33 4433 2225432 3456666665557899888888
Q ss_pred CCHHHHHHHHhcCCcEeEeC
Q 009670 106 SDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 106 ~d~e~v~~al~~GA~DYL~K 125 (529)
...+.+.+++..||+.+++=
T Consensus 201 ~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 201 SKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 88788999999999998764
No 174
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=57.56 E-value=89 Score=30.26 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=39.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.|++++.- |.-+++.+. ..+|||+...... ..+.++.| .+++..+ +.++|.+++..++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 57776643 444556443 3578886622122 23456778 8899877 99999999998875
No 175
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=57.22 E-value=67 Score=32.08 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEeEe-----CCCCHHHHHHHHHHHHHh
Q 009670 85 FKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLL-----KPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 85 leLL~~Ir~~~~ipVI--vlTa~~d~e~v~~al~~GA~DYL~-----KP~~~eeL~~~l~~vlr~ 142 (529)
+++++.++....+||| ...+-.+.+.+.+++.+||+.+++ |.-++.+....+...+..
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 5666666555567876 455666889999999999999876 444555555555555544
No 176
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=56.84 E-value=53 Score=33.75 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC---------C--CCCHHHHHHHHh---cCCC
Q 009670 34 TCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYM---------P--DMDGFKLLELVG---LEMD 96 (529)
Q Consensus 34 ~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~M---------P--dmdGleLL~~Ir---~~~~ 96 (529)
...+.++.+-+.. +..|. .+.+.++|..+.+. .+|.|++...- . +...++.+..+. ...+
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~---Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT---TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc---CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 3444444433444 56655 46777777665532 48888872100 0 122345454443 2457
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+|||...+-.+...+.+++.+||+...+
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 9999998999999999999999998765
No 177
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=56.39 E-value=1e+02 Score=30.32 Aligned_cols=96 Identities=13% Similarity=0.172 Sum_probs=60.7
Q ss_pred HHHHHHhCCC-eEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHH
Q 009670 39 LEKFLRECQY-EVT--VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 39 L~~~Le~~gy-~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir--~~~~ipVIvlTa~~d~e~v~~ 113 (529)
++..|+. |. .+. .-....+.++.+... .+|.|++|..=...+--.+...++ .....++++.+...+...+..
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 5555654 43 333 223344455555543 499999998544344434444443 234678999999999999999
Q ss_pred HHhcCCcEeEeCC--CCHHHHHHHHHH
Q 009670 114 GINHGACDYLLKP--VRMEELKNTWQH 138 (529)
Q Consensus 114 al~~GA~DYL~KP--~~~eeL~~~l~~ 138 (529)
+++.|++..++ | -+.+++...++.
T Consensus 107 ~ld~ga~~Iml-P~V~saeea~~~~~~ 132 (287)
T 2v5j_A 107 LLDVGTQTLLV-PMVQNADEAREAVRA 132 (287)
T ss_dssp HHHTTCCEEEE-SCCCSHHHHHHHHHH
T ss_pred HHhCCCCEEEe-CCCCCHHHHHHHHHH
Confidence 99999986555 5 467776665554
No 178
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=56.14 E-value=48 Score=31.53 Aligned_cols=68 Identities=9% Similarity=0.082 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCceEEE-EecCCCC-C--CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 56 AITALKMLRENRNNFDLVI-SDVYMPD-M--DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 56 a~eALe~L~e~~~~pDLVI-lDi~MPd-m--dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
..+..+.+.+. .++.|+ .++.-.+ . -.+++++.++...++|||...+-...+.+.++++.||+..++=
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 44544444443 356555 4543211 1 1378888887777899999999999999999999999998764
No 179
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=55.74 E-value=73 Score=29.91 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCCCC-CCH--HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 56 AITALKMLRENRNNFD-LVISDVYMPD-MDG--FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 56 a~eALe~L~e~~~~pD-LVIlDi~MPd-mdG--leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
..+.++.+.+. .++ +++.++.-.+ ..| +++++.++...++|||...+-...+.+.++++.||+.++.=
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vG 224 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 224 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHH
Confidence 44544544443 366 4556654222 123 77888887666899999999998899999999999988653
No 180
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=55.24 E-value=47 Score=31.09 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=44.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc---CCCceEEEEecC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN---RNNFDLVISDVY 78 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~---~~~pDLVIlDi~ 78 (529)
+|.+.+|..||-++......++.+++.|+. +. ...++.+.+..+... ...+|+|++|..
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 455679999999999999999999887763 54 457787776655321 235999999964
No 181
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=54.85 E-value=33 Score=28.87 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=14.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVT 51 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~ 51 (529)
+|||+..|...+..+-.++.+.||.|.
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 456666555555555555555555443
No 182
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=54.18 E-value=54 Score=29.79 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=49.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC-CCceEEEEecCCCCCCHHHHHHHH
Q 009670 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENR-NNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 18 ~~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~~-~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
..+|.+.+|..||-++......+..++..++ .+. ...++.+.+..+.... ..+|+|++|...+ .-.++++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 3456567999999999999999999987765 244 5578877766654422 3599999997533 223455443
No 183
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=53.58 E-value=97 Score=30.50 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=67.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD 96 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ 96 (529)
+...|||-||---..-+......++. .+++++ ++. +.+.|.+..++.. +.-+..|+ - +++. .++
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-------~---ell~-~~~ 86 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-------E---EMLA-SDV 86 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-------H---HHHH-CSS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-------H---HHhc-CCC
Confidence 33468999999877665554555555 467776 443 4444555544432 22234342 1 2333 355
Q ss_pred CcEEEEecCC--CHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAYS--DTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~~--d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+-+|+++... ..+.+.+|+++|..=|+-||+ +.++..+.+..+-+.
T Consensus 87 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 136 (350)
T 4had_A 87 IDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRN 136 (350)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHc
Confidence 6666665444 456788999999999999995 567777766655443
No 184
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=53.15 E-value=1.1e+02 Score=29.91 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=54.2
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 24 MRVLAV-DDDQTCLKILEKFLRECQYEVTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 24 mrVLIV-DDd~~v~~~L~~~Le~~gy~V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
++++++ .+++..+..++...... -.|.... ...+..+++. ..|++++.- .|+ +++.+. ..+|||
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~----~ad~~v~~S-----~g~-~lEA~a--~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMR----ASLLLVTDS-----GGL-QEEGAA--LGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHH----TEEEEEESC-----HHH-HHHHHH--TTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHH----hCcEEEECC-----cCH-HHHHHH--cCCCEE
Confidence 566654 55554455555544221 1344432 2224444443 267777643 355 445442 467998
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+.....+.... ++.| ..++.. .+.++|.+++..++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 76433333332 4555 467774 499999999998874
No 185
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=53.07 E-value=1.4e+02 Score=28.92 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=59.6
Q ss_pred HHHHHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHH
Q 009670 39 LEKFLRECQY---EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 39 L~~~Le~~gy---~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir--~~~~ipVIvlTa~~d~e~v~~ 113 (529)
++..|+. |. .+.......+.++.+... .+|.|++|..=.-.+--.+...++ .....++++.+...+...+..
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 4555554 33 222223334444555443 499999998543334434444443 234578999998888889999
Q ss_pred HHhcCCcEeEeCC--CCHHHHHHHHHHH
Q 009670 114 GINHGACDYLLKP--VRMEELKNTWQHV 139 (529)
Q Consensus 114 al~~GA~DYL~KP--~~~eeL~~~l~~v 139 (529)
+++.|++..++ | -+.+++...++.+
T Consensus 86 ~l~~g~~~I~~-P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 86 VLDIGAQTLLI-PMVDTAEQARQVVSAT 112 (267)
T ss_dssp HHHTTCCEEEE-CCCCSHHHHHHHHHHT
T ss_pred HHHhCCCEEEe-CCCCCHHHHHHHHHHH
Confidence 99999986544 5 4677766665543
No 186
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=53.03 E-value=93 Score=31.64 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=69.5
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDDQ-TCLKILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~-~v~~~L~~~Le~~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
+++++||.+.+ .....++.+.++.+-.|. ... ..++..+++.. .|++++-... +.-|+.+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHH--CCCCE
Confidence 47788887664 356667777666553454 333 33333455553 5777764432 334566777553 24688
Q ss_pred EEEecCCCHHHHHHHHhcC---------CcEeEeCCCCHHHHHHHHHHHHH
Q 009670 100 VMLSAYSDTKLVMKGINHG---------ACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~G---------A~DYL~KP~~~eeL~~~l~~vlr 141 (529)
|+. .. .-..+.+..| .++++..|-+.++|.+++..++.
T Consensus 393 I~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 393 VVA-RT---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred EEe-CC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 763 22 3455666777 88999999999999999999874
No 187
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=52.67 E-value=18 Score=35.67 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCCCcEEEEecCC------CHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHH
Q 009670 85 FKLLELVGLEMDLPVVMLSAYS------DTKLVMKGINHGACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~------d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
+++++.++...++|||+++-.. ....+..+.++|+++++.-.+..+++...+..+.
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~ 141 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQ 141 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 4667767656789999985222 2345667889999999987677776665555443
No 188
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=52.28 E-value=75 Score=32.34 Aligned_cols=108 Identities=7% Similarity=0.025 Sum_probs=64.7
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDDQ-TCLKILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~-~v~~~L~~~Le~~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
.++++||.+.+ .....++.+.++.+-.|. ... ..++..+++.. .|++++-... +.-|+.+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSRF-EPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCcc-CCCcHHHHHHHH--CCCCE
Confidence 46666665543 345566666655443343 232 33333345543 5666664332 334556666543 24687
Q ss_pred EEEecCCCHHHHHHHHhcC---------CcEeEeCCCCHHHHHHHHHHHHH
Q 009670 100 VMLSAYSDTKLVMKGINHG---------ACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~G---------A~DYL~KP~~~eeL~~~l~~vlr 141 (529)
|+. .. .-..+.+..| .++++..|-+.++|.+++..++.
T Consensus 394 I~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 754 22 3455666777 89999999999999999999874
No 189
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=52.00 E-value=33 Score=33.48 Aligned_cols=106 Identities=11% Similarity=0.144 Sum_probs=61.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEecCC------CCCCHHHHHHHHhcCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYM------PDMDGFKLLELVGLEM 95 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a--~sa~eALe~L~e~~~~pDLVIlDi~M------PdmdGleLL~~Ir~~~ 95 (529)
++++|+.+.+.. ..++.+.....-.|... -+.++..+++.. .|++|+-... ++.-|..+++.+. .
T Consensus 230 ~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~ 302 (394)
T 3okp_A 230 AQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--C 302 (394)
T ss_dssp CEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--T
T ss_pred eEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--c
Confidence 566666554332 22232222211123332 233555555543 5677764433 1344667777654 3
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 96 DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.+|||+ |... ...+.+..| .+++..|-+.++|.+++..++.
T Consensus 303 G~PvI~-~~~~---~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 303 GVPVIA-GTSG---GAPETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TCCEEE-CSST---TGGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCEEE-eCCC---ChHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 478876 3333 234456677 9999999999999999998875
No 190
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=51.42 E-value=22 Score=33.30 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=46.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe---EEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE---VTV-TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~---V~~-a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~ 89 (529)
+|.+.+|..||-++...+..++.++..|+. +.. ..++.+.+..+. ...+|+|++|...+. -.++++
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~ 147 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVD 147 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHH
Confidence 455689999999999999999999887764 553 456665543331 235999999975433 333454
No 191
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=50.95 E-value=61 Score=29.39 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcC--CCceEEEEecC
Q 009670 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLRENR--NNFDLVISDVY 78 (529)
Q Consensus 18 ~~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~~--~~pDLVIlDi~ 78 (529)
..+|.+.+|..||-++......+..++..++. +. ...++.+.+..+.... ..+|+|++|..
T Consensus 84 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 84 LALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 34565789999999999999999999887653 44 4577777766554310 35999999874
No 192
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=50.54 E-value=49 Score=31.36 Aligned_cols=69 Identities=12% Similarity=0.237 Sum_probs=48.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEecCCCCCCHHHHHHH
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLREN---RNNFDLVISDVYMPDMDGFKLLEL 90 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~---~~~pDLVIlDi~MPdmdGleLL~~ 90 (529)
+|.+.+|..||-++......++.++..++ .|. ...++.+.+..+... ...+|+|++|...+ +-..+++.
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~ 175 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKR 175 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHH
Confidence 45567999999999999999999988776 354 457777776655321 23599999996532 33444543
No 193
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=50.24 E-value=60 Score=29.53 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=43.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEecC
Q 009670 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENR--NNFDLVISDVY 78 (529)
Q Consensus 19 ~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~~--~~pDLVIlDi~ 78 (529)
.+|.+.+|..||-++......++.++..++ .+. ...++.+.+..+.... ..+|+|++|..
T Consensus 90 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 90 ALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp TSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 345567999999999999999999987765 344 4577777665554321 25999999864
No 194
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=49.97 E-value=1e+02 Score=29.85 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=57.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhcCCcEeEe-CCCCHHH
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL--EMDLPVVMLSAYSDTKLVMKGINHGACDYLL-KPVRMEE 131 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~--~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~-KP~~~ee 131 (529)
...+.++.+... .+|.||+|+.=-..+.-++...++. ...++++|.....+...+..+++.|++..++ |--+.++
T Consensus 25 ~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed 102 (261)
T 3qz6_A 25 YNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAET 102 (261)
T ss_dssp CCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHH
T ss_pred CCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHH
Confidence 345555665544 4999999997655555555554431 2356788888888888999999999987655 2246777
Q ss_pred HHHHHHHH
Q 009670 132 LKNTWQHV 139 (529)
Q Consensus 132 L~~~l~~v 139 (529)
+...+..+
T Consensus 103 ~~~~~~~~ 110 (261)
T 3qz6_A 103 MRETVRLA 110 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776655
No 195
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=49.93 E-value=36 Score=34.30 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=58.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe----------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE----------VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~----------V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
+++++||-|.+.-...+++.+++.|.. |.......+...++. ..|++++--...+.-|..+++-+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~----~aDv~vl~ss~~e~gg~~~lEAm- 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP----VGKIAIVGGTFVNIGGHNLLEPT- 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG----GEEEEEECSSSSSSCCCCCHHHH-
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH----hCCEEEECCcccCCCCcCHHHHH-
Confidence 367777777665444566666655543 222222233333332 25776653222122234455543
Q ss_pred cCCCCcEEEEecCCCHHH-HHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 93 LEMDLPVVMLSAYSDTKL-VMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 93 ~~~~ipVIvlTa~~d~e~-v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
...+|||.-+...+... +....+.| ++..+-+.++|.+++..++..
T Consensus 300 -A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 300 -CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred -HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 34678885223333333 33333444 566677899999999998863
No 196
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=49.75 E-value=17 Score=35.94 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=39.1
Q ss_pred HHHHHHHhcC-CCCcEEEEecC------CCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 85 FKLLELVGLE-MDLPVVMLSAY------SDTKLVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 85 leLL~~Ir~~-~~ipVIvlTa~------~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
+++++.+|.. .++|||+|+-. .-...+.++.++|++..++--+.+++.......+
T Consensus 85 ~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 85 FELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAA 146 (271)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 5566666654 78999999733 3345688888999999999768887755444443
No 197
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=49.52 E-value=78 Score=29.24 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCCceEEE-EecCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 56 AITALKMLRENRNNFDLVI-SDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 56 a~eALe~L~e~~~~pDLVI-lDi~MPdm---dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
..+.++.+.+. .+|.|+ .++...+. -.+++++.++...++|||+..+-...+.+.++++.||+..+.
T Consensus 156 ~~e~~~~~~~~--G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 156 AVKWAKEVEEL--GAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp HHHHHHHHHHH--TCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhC--CCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 44444444443 267665 44442221 145677766655688999988888888888999999998865
No 198
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=49.39 E-value=67 Score=29.94 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEE---EEecCCCC-----CCHHHHHHHHhcCCCCcEEEEecC
Q 009670 36 LKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLV---ISDVYMPD-----MDGFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 36 ~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLV---IlDi~MPd-----mdGleLL~~Ir~~~~ipVIvlTa~ 105 (529)
.+.++.+-+.. +..+. .+.+.+++...+.. ..|+| +..+. ++ ...+++++.++.. ++|||+..+-
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI 195 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCC
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCC
Confidence 44444443333 55544 45677887776653 37887 33321 21 1246778777655 8999999888
Q ss_pred CCHHHHHHHHhcCCcEeEeC
Q 009670 106 SDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 106 ~d~e~v~~al~~GA~DYL~K 125 (529)
.+.+.+.+++++||+.++.=
T Consensus 196 ~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 88999999999999988653
No 199
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=49.21 E-value=1.5e+02 Score=27.30 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=28.3
Q ss_pred CCCCCCccEEEEEeCCH--HHHHHHHHHHHhCCCeEEEE
Q 009670 17 IDKFPIGMRVLAVDDDQ--TCLKILEKFLRECQYEVTVT 53 (529)
Q Consensus 17 ~~~~p~~mrVLIVDDd~--~v~~~L~~~Le~~gy~V~~a 53 (529)
..+-|..|||.|--|+. ...+.|+.+|+..||+|.-+
T Consensus 15 ~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 15 QTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp ----CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEc
Confidence 35678889999999986 56678999999999998854
No 200
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=48.78 E-value=60 Score=30.12 Aligned_cols=60 Identities=22% Similarity=0.436 Sum_probs=44.0
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEecC
Q 009670 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENR--NNFDLVISDVY 78 (529)
Q Consensus 19 ~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~~--~~pDLVIlDi~ 78 (529)
.+|.+.+|..||-++......+..++..++ .+. ...++.+.+..+.... ..+|+|++|..
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 345567999999999999999998877665 244 4577777666554321 35999999964
No 201
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=48.77 E-value=1.2e+02 Score=32.13 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=64.9
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 009670 23 GMRVLAVD----DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPD------------MD 83 (529)
Q Consensus 23 ~mrVLIVD----Dd~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPd------------md 83 (529)
+..++++| +...+.+.++.+-+.. +..|. .+.+.++|..+++. ..|.|++.+. |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCC-CCcCcccccccCCCcc
Confidence 45677776 4455566666666554 44443 46788888777654 3788887532 11 12
Q ss_pred HHHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 84 GFKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 84 GleLL~~Ir---~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.+.++..+. ....+|||.-.+-.....+.+++.+||+..++=
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 344444332 134699999888899999999999999987664
No 202
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=48.61 E-value=81 Score=30.76 Aligned_cols=42 Identities=10% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
..+|||+.-...+.. +.++.| .+++..| +.++|.+++..++.
T Consensus 300 ~G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 457988664323322 345668 8999988 99999999998875
No 203
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=48.35 E-value=96 Score=30.07 Aligned_cols=58 Identities=16% Similarity=0.356 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe------CCCCHHHHHHHHHHHHHh
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL------KPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~------KP~~~eeL~~~l~~vlr~ 142 (529)
+++++.++...++|||..-+-.+.+.+.+++..||+...+ .|.-..++..-+...+..
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~~ 293 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQ 293 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4677777766689999888888999999999999887633 355555565555555443
No 204
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=47.57 E-value=66 Score=30.54 Aligned_cols=70 Identities=9% Similarity=0.099 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 55 RAITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 55 sa~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
+..+..+.+.+. ..| |.+.|....+. .-+++++.++....+|||+..+..+.+.+.++++.||+..++=-
T Consensus 31 ~~~~~a~~~~~~--Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHHC--CCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 445555555443 244 55567654321 12678888877778999998888888889999999999877643
No 205
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=47.31 E-value=32 Score=32.85 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=38.1
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 69 NFDLVISDVYMPDMDG-------FKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 69 ~pDLVIlDi~MPdmdG-------leLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.+|.|++.-..|+..| ++-++.++. ..+++ |.+.+--+.+.+.++.++||+.++.=
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD-IEVDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCSTTTHHHHHHHTCCEEEES
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCC-EEEeCCcCHHHHHHHHHcCCCEEEEe
Confidence 3788888777787666 333444443 33455 45666667888999999999987653
No 206
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=47.13 E-value=27 Score=35.83 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=58.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE--CQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~--~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
.+||.||.-- . .+..-..+.+ .+++++ ++. +.+.|.+..++.. +. +..|+. + ++ ...++-
T Consensus 7 ~~rv~VvG~G-~-g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~g--v~-~~~~~~--~--------l~-~~~D~v 70 (372)
T 4gmf_A 7 KQRVLIVGAK-F-GEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFG--IP-LYTSPE--Q--------IT-GMPDIA 70 (372)
T ss_dssp CEEEEEECST-T-THHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTT--CC-EESSGG--G--------CC-SCCSEE
T ss_pred CCEEEEEehH-H-HHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhC--CC-EECCHH--H--------Hh-cCCCEE
Confidence 5899999864 2 3332233333 257766 444 3444555554432 32 234431 1 11 123332
Q ss_pred EEEEecCCC----HHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 99 VVMLSAYSD----TKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~~d----~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+|++..... .+.+.+++++|..=++-||++.+|..+.++.+.++
T Consensus 71 ~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 71 CIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp EECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 222222222 57889999999999999999999887777766443
No 207
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=47.06 E-value=27 Score=32.51 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=47.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCC--------CHHHHHHHHhcC--CCCcEEEEecCCCHHHHHHHHhcCCcE
Q 009670 52 VTNRAITALKMLRENRNNFDLVISDVYMPDM--------DGFKLLELVGLE--MDLPVVMLSAYSDTKLVMKGINHGACD 121 (529)
Q Consensus 52 ~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm--------dGleLL~~Ir~~--~~ipVIvlTa~~d~e~v~~al~~GA~D 121 (529)
.+.+.+++.+.. . ..|.|.++-..|.. -|++.++.+... ..+|||.+-+-. .+.+.++++.||..
T Consensus 94 s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 567888876653 2 48999887655421 267777766544 689999887766 67788899999988
Q ss_pred eEe
Q 009670 122 YLL 124 (529)
Q Consensus 122 YL~ 124 (529)
.-+
T Consensus 169 Vav 171 (210)
T 3ceu_A 169 AVV 171 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 744
No 208
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=46.96 E-value=13 Score=37.15 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=40.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
+-++.+||-++.....|++-++... ++. ...++.+++..+......+||||+|-
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~-~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNK-KVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTS-CEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCC-cEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 3589999999999999998886532 333 45788888877654333589999996
No 209
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=46.90 E-value=2e+02 Score=27.85 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=59.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
|||.||.--..-...+..+.+..+++++ .+....+..+.+.+.. ...-+..| - -+.+ ..++-+|++
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~~-------~---~~~l--~~~~D~V~i 68 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY-QNIQLFDQ-------L---EVFF--KSSFDLVYI 68 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGS-SSCEEESC-------H---HHHH--TSSCSEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-CCCeEeCC-------H---HHHh--CCCCCEEEE
Confidence 6888888766655555554444467765 4443333333333221 11112222 1 1233 234556666
Q ss_pred ecCC--CHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 103 SAYS--DTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 103 Ta~~--d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
+... ..+.+.+++++|..-|+-||+ +.++....+..+.+
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 111 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEK 111 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 5443 446788899999999999996 66776666665543
No 210
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=46.80 E-value=26 Score=36.48 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=53.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVI 100 (529)
++.|+|||.++...+.++ ..|+.++... .-.+.|+.+. -...|+||+-+.- +..-+.++..++ ..++++||
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~ag--i~~A~~viv~~~~-~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAG--AAKAEVLINAIDD-PQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTT--TTTCSEEEECCSS-HHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcC--CCccCEEEECCCC-hHHHHHHHHHHHHhCCCCeEE
Confidence 567888888877655443 4566654322 1233343332 2247888875532 112333444444 46778888
Q ss_pred EEecCCCHHHHHHHHhcCCcEeEe
Q 009670 101 MLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 101 vlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+.+.. ........++||+..+.
T Consensus 100 ara~~--~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 100 ARARD--VDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEESS--HHHHHHHHHTTCSSCEE
T ss_pred EEECC--HHHHHHHHHCCCCEEEC
Confidence 87654 45666777899987765
No 211
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=46.19 E-value=79 Score=34.61 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=65.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHh-
Q 009670 23 GMRVLAV----DDDQTCLKILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MDG-FKLLELVG- 92 (529)
Q Consensus 23 ~mrVLIV----DDd~~v~~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd-mdG-leLL~~Ir- 92 (529)
.-+||++ |-+..=..++..+|+..||+|+.. -..++.++.+++.. +|+|.+-..|.. ++. -++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578887 666677778888899999999854 45777888887765 999999887753 221 22445453
Q ss_pred cCCCCcEEEEecCCCHHHHHHHH---hcCCcEeEeC
Q 009670 93 LEMDLPVVMLSAYSDTKLVMKGI---NHGACDYLLK 125 (529)
Q Consensus 93 ~~~~ipVIvlTa~~d~e~v~~al---~~GA~DYL~K 125 (529)
...++||++=-.....+....-+ -.||+.|-..
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D 211 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN 211 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECC
Confidence 44578876655555554432111 1288888543
No 212
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=45.98 E-value=43 Score=32.13 Aligned_cols=42 Identities=19% Similarity=0.091 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.+++++.++...++||++-.+-.+.+.+.+++.+||+.+++-
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 556777776656899999999888999999999999998763
No 213
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=45.81 E-value=28 Score=33.47 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCHH---HHHHHHhcCCcEeEeCCCCHHHHHHHHHHH
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYSDTK---LVMKGINHGACDYLLKPVRMEELKNTWQHV 139 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~d~e---~v~~al~~GA~DYL~KP~~~eeL~~~l~~v 139 (529)
++++++.++...++||++++ +.+.. .+..+.+.||+.++.-....+++...+..+
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLS-YYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEEC-CSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEe-cCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 45677777766789998875 22221 123488999999988656656655555544
No 214
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=45.69 E-value=95 Score=29.06 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCCC---HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 55 RAITALKMLRENRNNFD-LVISDVYMPDMD---GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 55 sa~eALe~L~e~~~~pD-LVIlDi~MPdmd---GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+..+..+.+.+.. .| |.+.|....+.. -+++++.++...++|||+..+..+.+.+.+++..||+..++-
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 4455555554432 44 556676543322 245566777677899999999999999999999999887663
No 215
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=45.66 E-value=84 Score=26.61 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=66.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC-cE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNR--AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL-PV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~s--a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i-pV 99 (529)
.++++|+.+.+. ...++.++++.+..+.. .. ..+..+++. ..|++++-.. .+.-|+.+++.+. ..+ ||
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 588999987654 46677777776665554 32 455555553 3788887544 3444677777654 344 88
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
|..+.... ..+.+..+. ++..|-+.+++..++..++.
T Consensus 103 i~~~~~~~---~~~~~~~~~--~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 103 IANSPLSA---TRQFALDER--SLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EECCTTCG---GGGGCSSGG--GEECTTCHHHHHHHHHHHHH
T ss_pred EeeCCCCc---hhhhccCCc--eEEcCCCHHHHHHHHHHHHh
Confidence 87332222 122233333 37888999999999999876
No 216
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=45.61 E-value=2.4e+02 Score=27.94 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=64.1
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEE-EE-CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDDQTCL-KILEKFLRECQYEVT-VT-NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~-~~L~~~Le~~gy~V~-~a-~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
.+||.||.--..-. ..+..+.+..+++++ ++ .+.+.+.+..++.. +..+ .|+ -+.+. .+++-+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~----------~~ll~-~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY----------PALLE-RDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH----------HHHHT-CTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH----------HHHhc-CCCCCE
Confidence 47999999877666 344444443477876 43 34455554444332 3222 332 12332 344555
Q ss_pred EEEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 100 VMLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
|+++.. ...+.+..++++|..=++-||+ +.++..+.++.+.+.
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 555543 3456788899999999999995 677777777666543
No 217
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=45.13 E-value=61 Score=32.44 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCCcEEEE--ecCCCHHHHHHHHhcCCcEeEeC-----CCCHHHHHHHHHHHHHhc
Q 009670 84 GFKLLELVGLEMDLPVVML--SAYSDTKLVMKGINHGACDYLLK-----PVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvl--Ta~~d~e~v~~al~~GA~DYL~K-----P~~~eeL~~~l~~vlr~~ 143 (529)
.+++++.++....+|||++ .+-...+.+.++++.|+++.++= --++......+..++..+
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 3677887776678999987 44457899999999999998654 334777777777777655
No 218
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=44.60 E-value=2.1e+02 Score=28.11 Aligned_cols=107 Identities=18% Similarity=0.121 Sum_probs=61.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRE--CQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~--~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~i 97 (529)
..+||.||.--..........|.. .+++++ ++. +.+.+.+..++.. ..-+..| +-+.+. .+++
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~----------~~~ll~-~~~v 83 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS----------YEELLE-SGLV 83 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC----------HHHHHH-SSCC
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC----------HHHHhc-CCCC
Confidence 358999998874333333334444 357765 444 3444444443322 1122222 112333 3455
Q ss_pred cEEEEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 98 PVVMLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 98 pVIvlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
-+|+++.. ...+.+.+|+++|..=|+-||+ +.++..+.+..+.+
T Consensus 84 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 84 DAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55555543 3457788999999999999995 77777777766644
No 219
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=43.82 E-value=89 Score=28.84 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 54 NRAITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 54 ~sa~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+..+..+.+.+. .+| |.+.|...... ..+++++.++...++|||+-.+..+.+.+.++++.||+...+
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4555666666554 367 55555443221 235667767655689999888888888899999999887764
No 220
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=43.42 E-value=95 Score=28.97 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=45.1
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 23 GMRVLAVD------DDQTCLKILEKFLRECQYEVTVT----NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 23 ~mrVLIVD------Dd~~v~~~L~~~Le~~gy~V~~a----~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
+-||++|+ |.......+++.|++.|+++... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 57899996 44457777888899999988877 477777777764 567775 7777777666554
No 221
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=43.20 E-value=1.8e+02 Score=29.02 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=62.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||.--..-...+...+...+++++ ++. +.+.+.+..++.. ..-+..|+ - +.+. .+++-+|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~--~~~~~~~~-------~---~ll~-~~~vD~V 92 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA--DARRIATA-------E---EILE-DENIGLI 92 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS--SCCEESCH-------H---HHHT-CTTCCEE
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC--CCcccCCH-------H---HHhc-CCCCCEE
Confidence 37999998654433334445556788876 443 4444444444331 11122221 1 2232 3456666
Q ss_pred EEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 101 MLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
+++.. ...+.+.+|+++|..=|+-||+ +.++..+.+..+.+
T Consensus 93 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 137 (361)
T 3u3x_A 93 VSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAE 137 (361)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHT
T ss_pred EEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 66544 3456688999999999999995 67777777766543
No 222
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=43.19 E-value=88 Score=29.15 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc---CCcEeEeC---
Q 009670 56 AITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH---GACDYLLK--- 125 (529)
Q Consensus 56 a~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~---GA~DYL~K--- 125 (529)
..+.++.+.+. .+| +++.+..-.+. -.+++++.++...++|||...+-...+.+.++++. ||+.++.=
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 35555555443 366 44566654322 24677887776678999999999988999999988 99887653
Q ss_pred ---CCCHHHHHH
Q 009670 126 ---PVRMEELKN 134 (529)
Q Consensus 126 ---P~~~eeL~~ 134 (529)
|..+.++.+
T Consensus 229 ~~~~~~~~~~~~ 240 (244)
T 2y88_A 229 YARRFTLPQALA 240 (244)
T ss_dssp HTTSSCHHHHHH
T ss_pred HCCCcCHHHHHH
Confidence 555544443
No 223
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=42.37 E-value=1.7e+02 Score=28.51 Aligned_cols=105 Identities=8% Similarity=0.178 Sum_probs=59.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHH-HhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFL-RECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~L-e~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||---..-...+..+. +..+++++ .+....+..+.+.+.- ..+-+..| +-+.+. .+++-+|
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-g~~~~~~~----------~~~~l~-~~~~D~V 75 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-GVETTYTN----------YKDMID-TENIDAI 75 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-CCSEEESC----------HHHHHT-TSCCSEE
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-CCCcccCC----------HHHHhc-CCCCCEE
Confidence 489999988766555555544 23577765 4444344444433321 12222222 122332 2345565
Q ss_pred EEecCC--CHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHH
Q 009670 101 MLSAYS--DTKLVMKGINHGACDYLLKPV--RMEELKNTWQHV 139 (529)
Q Consensus 101 vlTa~~--d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~v 139 (529)
+++... ..+.+.++++.|..-++-||+ +.++..+.+..+
T Consensus 76 ~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 76 FIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred EEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 555433 446788899999988899995 566666655544
No 224
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=42.16 E-value=1e+02 Score=28.89 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=53.1
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecC----CCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc-----C-CcEeE
Q 009670 55 RAITALKMLRENRNNFD-LVISDVY----MPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH-----G-ACDYL 123 (529)
Q Consensus 55 sa~eALe~L~e~~~~pD-LVIlDi~----MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~-----G-A~DYL 123 (529)
+..+..+.+.+. .++ +++.++. +.+. .+++++.++...++|||...+-...+.+.++++. | |+..+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 455554445443 366 5555643 2233 3788887765568999999999999999999988 9 88875
Q ss_pred e------CCCCHHHHHHH
Q 009670 124 L------KPVRMEELKNT 135 (529)
Q Consensus 124 ~------KP~~~eeL~~~ 135 (529)
+ .+++.+++.+.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 5 36666666543
No 225
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=42.08 E-value=1.9e+02 Score=27.67 Aligned_cols=98 Identities=12% Similarity=0.043 Sum_probs=58.2
Q ss_pred HHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHH
Q 009670 39 LEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG--LEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 39 L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir--~~~~ipVIvlTa~~d~e~v~~a 114 (529)
++..|+.-.. .+...-...+.++.+... .+|.|++|..=...+--++...++ .....++++.+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 4555554222 222222334444555433 599999998443223222323332 2345789999999999999999
Q ss_pred HhcCCcEeEe-CCCCHHHHHHHHHH
Q 009670 115 INHGACDYLL-KPVRMEELKNTWQH 138 (529)
Q Consensus 115 l~~GA~DYL~-KP~~~eeL~~~l~~ 138 (529)
++.|++..++ |--+.+++...++.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 9999987544 22467877655443
No 226
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=41.73 E-value=1.4e+02 Score=30.62 Aligned_cols=107 Identities=12% Similarity=0.144 Sum_probs=71.6
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCCe--EEEEC--CHHHHHHHHHhcCCCc----eEEEEecCCCC
Q 009670 24 MRVLAVDD--DQ------------TCLKILEKFLRECQYE--VTVTN--RAITALKMLRENRNNF----DLVISDVYMPD 81 (529)
Q Consensus 24 mrVLIVDD--d~------------~v~~~L~~~Le~~gy~--V~~a~--sa~eALe~L~e~~~~p----DLVIlDi~MPd 81 (529)
++++|+.+ .+ .....++.++++.+.. |.... +..+..+++.. . |++++-... +
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~~-E 369 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSFY-E 369 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCSC-B
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECccc-C
Confidence 47888877 22 1166777777776653 55443 35677777764 5 888874432 3
Q ss_pred CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 82 mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.-|+.+++.+. ..+|||... . ....+.+..|.++++..|-+.++|.+++..++.
T Consensus 370 g~~~~~lEAma--~G~PvI~s~-~---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 370 PFGLAPVEAMA--SGLPAVVTR-N---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp CCCSHHHHHHH--TTCCEEEES-S---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CCCcHHHHHHH--cCCCEEEec-C---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 34666777654 357888543 2 235566778888999999999999999998874
No 227
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=41.53 E-value=1.9e+02 Score=30.37 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=60.1
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCCH
Q 009670 23 GMRVLAVDD----DQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP-----------DMDG 84 (529)
Q Consensus 23 ~mrVLIVDD----d~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MP-----------dmdG 84 (529)
+..+++++- .....+.++.+-+.. ++.|. ...+.++|..+.+. .+|.|.+...-. +...
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCccH
Confidence 345566532 233445555554444 45443 45677777655542 478887743210 1223
Q ss_pred HHHHHHHh---cCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 85 FKLLELVG---LEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 85 leLL~~Ir---~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
++.+..+. ...++|||.-.+-.+...+.+++.+||+...+
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 44443332 23579999999999999999999999987654
No 228
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=40.98 E-value=1e+02 Score=29.69 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.++++.++...++||++=.+-.+.+.+.+++..||+.+++=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57788777666889887777777999999999999998764
No 229
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=40.91 E-value=16 Score=33.51 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=32.9
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009670 24 MR-VLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 24 mr-VLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
|| |+|||........+.++|++.|+++..+......++.+... .+|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEE
Confidence 56 99999776666678889998999877665432112233322 2787777
No 230
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=40.66 E-value=23 Score=32.76 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=34.4
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 69 NFDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 69 ~pDLVIlDi~MPdmdG-------leLL~~Ir~-----~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
..|.|+++-..|+.+| ++.++.++. ..++||++.-+-. .+.+.+++++||+.+.+
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEE
Confidence 3788888877776544 233443332 1256766554444 67777788899988754
No 231
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=40.25 E-value=2.3e+02 Score=27.78 Aligned_cols=106 Identities=11% Similarity=0.148 Sum_probs=60.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
+||.||.--..-...+..+.+..+++++ ++. +.+.+.+..+... ..-+..|+ - +.+. .+++-+|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~~~~-------~---~ll~-~~~~D~V~ 69 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLG--VEKAYKDP-------H---ELIE-DPNVDAVL 69 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHT--CSEEESSH-------H---HHHH-CTTCCEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhC--CCceeCCH-------H---HHhc-CCCCCEEE
Confidence 6888888766555544444443467766 443 3344433333321 22222221 1 2232 34455555
Q ss_pred EecCC--CHHHHHHHHhcCCcEeEeCC--CCHHHHHHHHHHHHHh
Q 009670 102 LSAYS--DTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIRR 142 (529)
Q Consensus 102 lTa~~--d~e~v~~al~~GA~DYL~KP--~~~eeL~~~l~~vlr~ 142 (529)
++... ..+.+..++++|..-|+-|| .+.++..+.+..+.+.
T Consensus 70 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~ 114 (344)
T 3ezy_A 70 VCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKA 114 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHH
T ss_pred EcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55443 34567889999999999999 5677777766665443
No 232
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=40.24 E-value=80 Score=29.76 Aligned_cols=69 Identities=7% Similarity=0.094 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCC---CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 55 RAITALKMLRENRNNFD-LVISDVYMP---DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 55 sa~eALe~L~e~~~~pD-LVIlDi~MP---dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+..+..+.+.+. .+| |.+.|+.-. ...-+++++.++....+|||+--+-.+.+.+.++++.||+..++-
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 444555555543 355 445676422 222367888887777899999989899999999999998876643
No 233
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=40.16 E-value=2.2e+02 Score=28.06 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=61.2
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCC--eEEEEC-----CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 23 GMRVLAVDDD----QTCLKILEKFLRECQY--EVTVTN-----RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 23 ~mrVLIVDDd----~~v~~~L~~~Le~~gy--~V~~a~-----sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
.++++|+.+. +.....++.+.+..+. .|.... +.++..+++.. .|++++-... +.-|+.+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 3666777665 2334444554444332 344332 12344455543 4666654332 33456666655
Q ss_pred hcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 92 GLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 92 r~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
. ..+|||..- . ....+.+..|..+++.. +.++|.+++..++.
T Consensus 337 a--~G~PvI~~~-~---~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGRA-V---GGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEES-C---HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEcc-C---CCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 3 357887642 2 34556677788999996 89999999988875
No 234
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=39.57 E-value=32 Score=34.03 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=48.3
Q ss_pred ccEEEEEeC-----CHHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHhcCCCceEEEEecCCCCCCHHH---HH
Q 009670 23 GMRVLAVDD-----DQTCLKILEKFLRECQ-YEVTVTNRAI-----TALKMLRENRNNFDLVISDVYMPDMDGFK---LL 88 (529)
Q Consensus 23 ~mrVLIVDD-----d~~v~~~L~~~Le~~g-y~V~~a~sa~-----eALe~L~e~~~~pDLVIlDi~MPdmdGle---LL 88 (529)
.+|||||.. -+.....|..+|++.| |+|.++.+.. +.+ .+.-..+|+||++..+...+--. |.
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f---~~~L~~~D~vV~~~~~~~l~~~~~~~l~ 80 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF---VLDFSPYQLVVLDYNGDSWPEETNRRFL 80 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC---CCCCTTCSEEEECCCSSCCCHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH---hhhhhcCCEEEEeCCCCcCCHHHHHHHH
Confidence 489999976 2666688999999887 9998876531 222 11123599999888655443322 22
Q ss_pred HHHhcCCCCcEEEEec
Q 009670 89 ELVGLEMDLPVVMLSA 104 (529)
Q Consensus 89 ~~Ir~~~~ipVIvlTa 104 (529)
+.++. ...+|++-+
T Consensus 81 ~yV~~--Ggglv~~H~ 94 (281)
T 4e5v_A 81 EYVQN--GGGVVIYHA 94 (281)
T ss_dssp HHHHT--TCEEEEEGG
T ss_pred HHHHc--CCCEEEEec
Confidence 34443 457777743
No 235
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=38.99 E-value=33 Score=32.30 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=49.1
Q ss_pred HHhCCCeEEE-E--CCHHHHHHHHHhcCCCceEEEEecCCCCCC-------HHHHHHHHhcCC-CCcEEEEecCCCHHHH
Q 009670 43 LRECQYEVTV-T--NRAITALKMLRENRNNFDLVISDVYMPDMD-------GFKLLELVGLEM-DLPVVMLSAYSDTKLV 111 (529)
Q Consensus 43 Le~~gy~V~~-a--~sa~eALe~L~e~~~~pDLVIlDi~MPdmd-------GleLL~~Ir~~~-~ipVIvlTa~~d~e~v 111 (529)
+++.|..+.. + .+..+.++.+.......|.|+++-..|+.. +++.++.++... ++||++.-+-.. +.+
T Consensus 109 i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni 187 (228)
T 1h1y_A 109 IKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STI 187 (228)
T ss_dssp HHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTH
T ss_pred HHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHH
Confidence 3444665443 3 233444554443100379999988877633 355556555433 778776655544 678
Q ss_pred HHHHhcCCcEeEeC
Q 009670 112 MKGINHGACDYLLK 125 (529)
Q Consensus 112 ~~al~~GA~DYL~K 125 (529)
.++++.||+.++.=
T Consensus 188 ~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 188 DVAASAGANCIVAG 201 (228)
T ss_dssp HHHHHHTCCEEEES
T ss_pred HHHHHcCCCEEEEC
Confidence 88888999988653
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=38.95 E-value=53 Score=34.35 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=27.5
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQ---TCLKILEKFLRECQYEVTVTN---RA----ITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~---~v~~~L~~~Le~~gy~V~~a~---sa----~eALe~L~e~~~~pDLVIlDi 77 (529)
+.||++||-|+ .....+..+-...++.+..+. +. .++++.++.. .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 56777777775 222223222233455554432 22 2234444322 499999998
No 237
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=38.76 E-value=37 Score=31.90 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+.+++.+...+ ||+| -.||+.-- ++++.++...++|||+=-.-.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i---EiLPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI---ELLPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE---EEECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE---EECCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 45777777664 8977 33677543 678887777789999877888999999999999987654
No 238
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=38.62 E-value=44 Score=34.44 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eEE-EECCHHHHHHHHHhcCCCceEEEEecCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQ---Y------EVT-VTNRAITALKMLRENRNNFDLVISDVYM 79 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~g---y------~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~M 79 (529)
-+|.+||=|+.+.+..++.+.... + ++. ...++.+.++.+.+....+|+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 689999999999999999875311 1 233 4578888776553223469999999854
No 239
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=38.60 E-value=92 Score=24.71 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=51.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQ-YEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~g-y~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
+++|+|+.- -.+-..+...|...| ++|+.+....+.++.+... ....+..|+.- --++.+.++ .+-+|+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~~----~~~~~~~~~---~~d~vi 74 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAKD----EAGLAKALG---GFDAVI 74 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTTC----HHHHHHHTT---TCSEEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCCC----HHHHHHHHc---CCCEEE
Confidence 478999988 666666666676778 8888665544555555432 36677766642 222333333 344555
Q ss_pred EecC-C-CHHHHHHHHhcCCcEe
Q 009670 102 LSAY-S-DTKLVMKGINHGACDY 122 (529)
Q Consensus 102 lTa~-~-d~e~v~~al~~GA~DY 122 (529)
.+.. . .......+.+.|+.-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 75 SAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCCchhhHHHHHHHHHhCCCEE
Confidence 5432 2 2334455567776544
No 240
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=38.58 E-value=24 Score=34.98 Aligned_cols=93 Identities=24% Similarity=0.368 Sum_probs=58.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCC-CcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMD-LPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~-ipVIv 101 (529)
.|||.||-....-...+.++|++.|+++.......+.+ ..+|+||+ -+.||- +++..+.... +||+=
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv----lGGDGT-~L~aa~~~~~~~PilG 96 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS----VGGDGT-ILRILQKLKRCPPIFG 96 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE----EECHHH-HHHHHTTCSSCCCEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE----ECCCHH-HHHHHHHhCCCCcEEE
Confidence 38888884321116778888998999988765432221 13788876 266774 3333332222 89987
Q ss_pred EecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 102 LSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 102 lTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
+.. |=.+||. +++++++..++..+++
T Consensus 97 IN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 97 INT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred ECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 753 4556776 5777888888888876
No 241
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=38.33 E-value=42 Score=30.74 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=43.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEecCCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN--RNNFDLVISDVYMP 80 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~--~~~pDLVIlDi~MP 80 (529)
++.+.+|.-||-++......++.++..+.. |. ...++.+.+..+... ...+|+|++|....
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 80 LQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 455689999999999999999998876653 54 457776665544320 03599999997443
No 242
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=38.23 E-value=47 Score=31.53 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecC---C-CC-CCHHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEeEeCCC
Q 009670 55 RAITALKMLRENRNNFDLVISDVY---M-PD-MDGFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLLKPV 127 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~---M-Pd-mdGleLL~~Ir~~~~ipVI--vlTa~~d~e~v~~al~~GA~DYL~KP~ 127 (529)
+..++++.+.+. ..|++=+|+. . |. ..|.++++.++...+.|+. +++... ..++..+.++||+....-..
T Consensus 18 ~l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp-~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSG-GGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCH-HHHHHHHHHcCCCEEEECcc
Confidence 334555555443 3666666651 1 22 2377899988765566765 666433 44678889999999877655
Q ss_pred --CHHHHHHHHHHHHH
Q 009670 128 --RMEELKNTWQHVIR 141 (529)
Q Consensus 128 --~~eeL~~~l~~vlr 141 (529)
..+.....++.+..
T Consensus 95 ~~~~~~~~~~~~~i~~ 110 (230)
T 1tqj_A 95 HNASPHLHRTLCQIRE 110 (230)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHH
Confidence 44455566665543
No 243
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=37.99 E-value=1.6e+02 Score=27.39 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=45.1
Q ss_pred CHHHHHHHHHhcCCCceEE-EEecCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 55 RAITALKMLRENRNNFDLV-ISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLV-IlDi~MPdm---dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+..+..+.+.+. ..|.+ +.|..-... ..+++++.++...++||++-.+-.+.+.+.++++.||+..++-
T Consensus 31 d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 444444555443 35544 445432211 1355667777677899999888888899999999999887664
No 244
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=37.66 E-value=2.8e+02 Score=27.17 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=61.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECC-HHHHHHHHHhcCCCce-EEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNR-AITALKMLRENRNNFD-LVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~s-a~eALe~L~e~~~~pD-LVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
+||.||.--..-...+..+.+. .+++++ .+.. .+.+.+..++.. ++ -+..|+ - +.+. .+++-+
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g--~~~~~~~~~-------~---~ll~-~~~~D~ 69 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQ--LNATVYPND-------D---SLLA-DENVDA 69 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTT--CCCEEESSH-------H---HHHH-CTTCCE
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhC--CCCeeeCCH-------H---HHhc-CCCCCE
Confidence 6888888876665555555523 577766 4443 333433333321 21 222221 1 2232 344555
Q ss_pred EEEec--CCCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 100 VMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa--~~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
|+++. ....+.+.+++++|..=|+-||+ +.++..+.++.+.+.
T Consensus 70 V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~ 116 (344)
T 3mz0_A 70 VLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred EEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 55544 34456788899999999999994 667777777665544
No 245
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=37.10 E-value=89 Score=26.21 Aligned_cols=53 Identities=17% Similarity=0.050 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 69 NFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 69 ~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+|+||+-.. .+..-+.++...+......||+..... .......+.|++..+.
T Consensus 70 ~~d~vi~~~~-~~~~n~~~~~~a~~~~~~~iia~~~~~--~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 70 GVSAVLITGS-DDEFNLKILKALRSVSDVYAIVRVSSP--KKKEEFEEAGANLVVL 122 (141)
T ss_dssp TCSEEEECCS-CHHHHHHHHHHHHHHCCCCEEEEESCG--GGHHHHHHTTCSEEEE
T ss_pred cCCEEEEecC-CHHHHHHHHHHHHHhCCceEEEEEcCh--hHHHHHHHcCCCEEEC
Confidence 4677776442 111122233333332244566555433 3344556778754443
No 246
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=36.96 E-value=61 Score=30.47 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=47.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 18 DKFPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 18 ~~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
..+|.+.+|..||-++......+..+++.++. |. ...++.+.+..+.. ...+|+|++|...+ +-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchH--HHHHHHHHH
Confidence 34555689999999999999999999887653 44 45777665544321 12699999987433 233455433
No 247
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=36.61 E-value=71 Score=29.93 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=51.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhc---CCcEeEe---
Q 009670 55 RAITALKMLRENRNNFD-LVISDVYMPDM---DGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINH---GACDYLL--- 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pD-LVIlDi~MPdm---dGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~---GA~DYL~--- 124 (529)
+..+..+.+.+. .+| ++++++.-.++ -.+++++.++...++|||...+-.+.+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 455554544443 367 55566542221 23678887776668999999999988999999999 9998765
Q ss_pred ---CCCCHHHHHHH
Q 009670 125 ---KPVRMEELKNT 135 (529)
Q Consensus 125 ---KP~~~eeL~~~ 135 (529)
.|+.+.++...
T Consensus 225 l~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 225 LYAKAFTLEEALEA 238 (244)
T ss_dssp HHTTSSCHHHHHHH
T ss_pred HHcCCCCHHHHHHH
Confidence 34555554443
No 248
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=36.51 E-value=1.7e+02 Score=29.19 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=57.0
Q ss_pred CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhcCCCCcEEEEecCCCH-------------HHH
Q 009670 47 QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGLEMDLPVVMLSAYSDT-------------KLV 111 (529)
Q Consensus 47 gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLL~~Ir~~~~ipVIvlTa~~d~-------------e~v 111 (529)
.+.+. ++.+.+.|+.+.+...+.+.|. .++..++. -+..+++.++...++||.+|.-..+. +.+
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI 117 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADI 117 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHH
Confidence 45555 4688888888887654233332 22333443 37788888877778998777654443 467
Q ss_pred HHHHhcCCcEeEeCC------CCHHHHHHHHH
Q 009670 112 MKGINHGACDYLLKP------VRMEELKNTWQ 137 (529)
Q Consensus 112 ~~al~~GA~DYL~KP------~~~eeL~~~l~ 137 (529)
..+.++||+++..-- ++.+.+...+.
T Consensus 118 ~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~ 149 (287)
T 3iwp_A 118 RLAKLYGADGLVFGALTEDGHIDKELCMSLMA 149 (287)
T ss_dssp HHHHHTTCSEEEECCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHH
Confidence 778899999987763 34444444444
No 249
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=36.48 E-value=64 Score=31.62 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=43.3
Q ss_pred HhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 64 RENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 64 ~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
++.. ||+||.=---|..-|-.-.|.+-...++|.|+++...... ..++++..-.+|++-+
T Consensus 61 ~~~~--pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk 120 (283)
T 1qv9_A 61 EDFE--PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVK 120 (283)
T ss_dssp HHHC--CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEET
T ss_pred hhcC--CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEe
Confidence 4444 9998886666667788878766556789999999887766 5677766566665543
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=36.36 E-value=65 Score=30.23 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHhcC--CCceEEEEecCC-----CCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHH
Q 009670 57 ITALKMLRENR--NNFDLVISDVYM-----PDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 57 ~eALe~L~e~~--~~pDLVIlDi~M-----PdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~a 114 (529)
..+++.+++.- ..+||||+|-.. .-.+--++++.+...+.---|++|+..-...+.++
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 33444444432 469999999532 22345567788876665556678888776666554
No 251
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=36.24 E-value=31 Score=31.59 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcC-CCCcEEE--EecCCCHHHHHHHHhcCCcEeEeCCCCH
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGLE-MDLPVVM--LSAYSDTKLVMKGINHGACDYLLKPVRM 129 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLL~~Ir~~-~~ipVIv--lTa~~d~e~v~~al~~GA~DYL~KP~~~ 129 (529)
+.+++++.++......| ++++.++- .+|.++++.++.. ++.|+++ .+..-....+..+.++||+....-+...
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 45556665554331123 35555441 3566778777643 4778774 4332123347788899999888777554
Q ss_pred -HHHHHHHHHH
Q 009670 130 -EELKNTWQHV 139 (529)
Q Consensus 130 -eeL~~~l~~v 139 (529)
+.+...++.+
T Consensus 89 ~~~~~~~~~~~ 99 (207)
T 3ajx_A 89 DSTIAGAVKAA 99 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 4444444443
No 252
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=35.98 E-value=55 Score=32.28 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=43.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.|++++-.. .+.-|..+++.+. ..+|||.... .. ..+.+..|-.+++..|-+.++|.+++..++.
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~-~~---~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRV-GG---IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECC-TT---STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecC-CC---hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 567776443 2334566777553 3578876532 21 2344566788999999999999999998875
No 253
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=35.76 E-value=1.2e+02 Score=29.83 Aligned_cols=73 Identities=27% Similarity=0.210 Sum_probs=0.0
Q ss_pred ccEEEEEeCCHHHH----HHHHHHHHhCCCeEEEECC-------------------------------------------
Q 009670 23 GMRVLAVDDDQTCL----KILEKFLRECQYEVTVTNR------------------------------------------- 55 (529)
Q Consensus 23 ~mrVLIVDDd~~v~----~~L~~~Le~~gy~V~~a~s------------------------------------------- 55 (529)
.||||++-....=+ ..+...|++.|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 56 ----------------------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 56 ----------------------a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
..+..+.+++.+ ||+|++|. +...|.-..+.++ +|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--PD~Vv~~~--~~~~~~~aa~~~g----iP~v~~~ 142 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWR--PSVLLVDV--CALIGRVLGGLLD----LPVVLHR 142 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCHHHHHHHHHTT----CCEEEEC
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC--CCEEEeCc--chhHHHHHHHHhC----CCEEEEe
No 254
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=35.68 E-value=1.3e+02 Score=29.75 Aligned_cols=107 Identities=9% Similarity=0.053 Sum_probs=66.0
Q ss_pred ccEEEEEeCCHH-----HHHHHHHHHHhCCCe---------EEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHH
Q 009670 23 GMRVLAVDDDQT-----CLKILEKFLRECQYE---------VTVTN--RAITALKMLRENRNNFDLVISDVYMPDMDGFK 86 (529)
Q Consensus 23 ~mrVLIVDDd~~-----v~~~L~~~Le~~gy~---------V~~a~--sa~eALe~L~e~~~~pDLVIlDi~MPdmdGle 86 (529)
.++++||.+.+. ....+++++++.+.. +.... +.++..+++.. .|++++--. -+.-|+.
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~ 289 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLC 289 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcH
Confidence 367777754432 345566666655544 32222 34566666654 578777433 2334666
Q ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCc---------------Ee--EeCCCCHHHHHHHHHHHHH
Q 009670 87 LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGAC---------------DY--LLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 87 LL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~---------------DY--L~KP~~~eeL~~~l~~vlr 141 (529)
+++.+. ..+|||.. . ..-..+.+..|.. ++ +..|-+.++|.+++ .++.
T Consensus 290 ~lEAma--~G~PvI~s-~---~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 290 SAEGAV--LGKPLIIS-A---VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHHT--TTCCEEEE-C---CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHHH--cCCCEEEc-C---CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 777653 45788853 2 2345566677776 88 99999999999999 8764
No 255
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=35.55 E-value=2.3e+02 Score=27.40 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=57.4
Q ss_pred cEEEEEeCCHHHHHH-HHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 24 MRVLAVDDDQTCLKI-LEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~-L~~~Le~~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
|||.||---..-... +..+.+ .+++++ .+. +.+.+.+..++.. ..-+. .| +-+.+. .+++-+|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g--~~~~~-------~~---~~~~l~-~~~~D~V 66 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENG--IGKSV-------TS---VEELVG-DPDVDAV 66 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTT--CSCCB-------SC---HHHHHT-CTTCCEE
T ss_pred CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcC--CCccc-------CC---HHHHhc-CCCCCEE
Confidence 577788776555554 444444 678876 444 3333333333221 11011 12 112333 2345566
Q ss_pred EEecCC--CHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 101 MLSAYS--DTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~--d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
+++... ..+.+.++++.|..-|+-||+ +.++....++.+.+
T Consensus 67 ~i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~ 111 (332)
T 2glx_A 67 YVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAARE 111 (332)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EEeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 665443 346778899999988999996 56666666655543
No 256
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=35.43 E-value=2.1e+02 Score=24.55 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=45.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
.+|..||-++...+..+..++..++ .+. ...+..+.+..+......+|+|++|...-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 6899999999999999988877664 244 4567766555443223369999998542233445555544
No 257
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=35.31 E-value=57 Score=31.15 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=52.3
Q ss_pred HHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhcC-CCCcEEEEecCCCHHH
Q 009670 42 FLRECQYEVTVTN---RAITALKMLRENRNNFDLVISDVYMPDMDG-------FKLLELVGLE-MDLPVVMLSAYSDTKL 110 (529)
Q Consensus 42 ~Le~~gy~V~~a~---sa~eALe~L~e~~~~pDLVIlDi~MPdmdG-------leLL~~Ir~~-~~ipVIvlTa~~d~e~ 110 (529)
.+++.|..+..+- +..+.++.+... ..+|+|++=-.-|+.+| ++-++.++.. .+++ |.+.+--+.+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHH
Confidence 5667788866553 334444444331 13899988777776555 4444544432 2444 55667777889
Q ss_pred HHHHHhcCCcEeEeC
Q 009670 111 VMKGINHGACDYLLK 125 (529)
Q Consensus 111 v~~al~~GA~DYL~K 125 (529)
+.++.++||+-++.=
T Consensus 187 i~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 187 TEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHTCCEEEES
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999988664
No 258
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=34.89 E-value=2e+02 Score=26.80 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=61.9
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCC----CC-CCHHHHHHHH-h--cCCCCcEEEEecCCCH
Q 009670 39 LEKFLRECQYEVTV--TNRAITALKMLRENRNNFDLVISDVYM----PD-MDGFKLLELV-G--LEMDLPVVMLSAYSDT 108 (529)
Q Consensus 39 L~~~Le~~gy~V~~--a~sa~eALe~L~e~~~~pDLVIlDi~M----Pd-mdGleLL~~I-r--~~~~ipVIvlTa~~d~ 108 (529)
.-..|++.|+.+.. +..+...+..+...+ ||.|=+|-.+ .. .....+++.+ . ...++. |+..+-.+.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~-viaeGVEt~ 220 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLE-VVAEGVENA 220 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCE-EEECCCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCe-EEEEeCCCH
Confidence 33456667998775 356667788888765 9999999532 22 1233344422 2 234454 446777788
Q ss_pred HHHHHHHhcCCcE----eEeCCCCHHHHHHHHHH
Q 009670 109 KLVMKGINHGACD----YLLKPVRMEELKNTWQH 138 (529)
Q Consensus 109 e~v~~al~~GA~D----YL~KP~~~eeL~~~l~~ 138 (529)
+....+.+.|++. |+.||...+++...++.
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 8888888999864 47799999998776653
No 259
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=34.79 E-value=1.6e+02 Score=27.13 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=43.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc------------C-CCceEEEEecCCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQYE--VT-VTNRAITALKMLREN------------R-NNFDLVISDVYMP 80 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~-~a~sa~eALe~L~e~------------~-~~pDLVIlDi~MP 80 (529)
+|.+.+|..||-++......+..++..++. +. ...++.+.+..+... . ..+|+|++|...+
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~ 158 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE 158 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH
Confidence 444579999999999999999999887663 44 457777665544321 1 3599999996533
No 260
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=34.54 E-value=3.5e+02 Score=26.79 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCC------------C--HHHHHHHHhc
Q 009670 31 DDQTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVYMPDM------------D--GFKLLELVGL 93 (529)
Q Consensus 31 Dd~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MPdm------------d--GleLL~~Ir~ 93 (529)
+.....+.++.+-+.. +.-|. .+.+.++|..+++.. .|.|++.-+ ++. . -++++..+..
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 4455666666665554 34343 256788887777653 788877332 221 1 3556666655
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
..++|||.-.+-.+...+.+++.+||+...+
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 5589999999999999999999999998654
No 261
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=34.36 E-value=1.1e+02 Score=30.46 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=62.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECC-HHHHHHHHHhcCCCce-EEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNR-AITALKMLRENRNNFD-LVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~s-a~eALe~L~e~~~~pD-LVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
.+||.||.--..-...+..+.+. .+++++ ++.. .+.+.+..++.. ++ -+..| -- +.+. .+++-
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g--~~~~~~~~-------~~---~ll~-~~~~D 89 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYA--IEAKDYND-------YH---DLIN-DKDVE 89 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHT--CCCEEESS-------HH---HHHH-CTTCC
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhC--CCCeeeCC-------HH---HHhc-CCCCC
Confidence 36899999887766666665533 577876 4433 333333333321 11 12222 11 2333 23444
Q ss_pred EEEEec--CCCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 99 VVMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa--~~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+|+++. ....+.+..++++|..=|+-||+ +.++..+.+..+.+.
T Consensus 90 ~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 90 VVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 555543 34556788899999999999995 677777777765544
No 262
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=34.20 E-value=1.5e+02 Score=29.98 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=56.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 25 RVLAVDDDQTCLKILEKFLR----ECQY-E-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le----~~gy-~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
-|||-|.+-...-.+...++ ..+. . .+.+.+.+++.+.++. .+|+|.+|-. +--++-+.++....-.
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~----~~~~l~~av~~l~~~v 276 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNF----SLEMMREAVKINAGRA 276 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESC----CHHHHHHHHHHHTTSS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhCCCC
Confidence 36666655333322333332 2332 2 3477889999988874 4899999973 3222322222211224
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.|..|+--+.+.+.+..+.|++.|-
T Consensus 277 ~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 277 ALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 6778888899999999999996653
No 263
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=34.19 E-value=96 Score=27.86 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=31.5
Q ss_pred CCCCCccEEEEE--eCC------------HHHHHHHHHHHHhCCCeEE---EECCH-HHHHHHHHhc--CCCceEEEEe
Q 009670 18 DKFPIGMRVLAV--DDD------------QTCLKILEKFLRECQYEVT---VTNRA-ITALKMLREN--RNNFDLVISD 76 (529)
Q Consensus 18 ~~~p~~mrVLIV--DDd------------~~v~~~L~~~Le~~gy~V~---~a~sa-~eALe~L~e~--~~~pDLVIlD 76 (529)
...|..+||-|| -|. ......|...|++.|++|. ++.+- ++..+.++.. ...+|+||+-
T Consensus 10 ~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred hcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 445666775444 442 2345678888888898865 34443 3333333321 2247888774
No 264
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=34.19 E-value=3.4e+02 Score=26.69 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=60.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||---..-...+..+.+..+++++ ++. +.+.+.+..++..-.++....+ + +-+.+. .+++-+|
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~------~---~~~ll~-~~~~D~V 75 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG------S---YESLLE-DPEIDAL 75 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES------S---HHHHHH-CTTCCEE
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC------C---HHHHhc-CCCCCEE
Confidence 48999998766655555554444567765 444 3444444443322001111111 1 112333 3345555
Q ss_pred EEecCC--CHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 101 MLSAYS--DTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 101 vlTa~~--d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
+++... ..+.+.+++++|..-++-||+ +.++....+..+.+
T Consensus 76 ~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~ 120 (362)
T 1ydw_A 76 YVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEA 120 (362)
T ss_dssp EECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred EEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHH
Confidence 555433 456788899999999999995 56776666655533
No 265
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=34.15 E-value=1.8e+02 Score=28.56 Aligned_cols=106 Identities=11% Similarity=0.196 Sum_probs=60.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
.+||.||.--..-...+..+.+..+++++ .+....+..+.+.+.. .+. +..|+ -+.+. .+++-+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-g~~-~~~~~----------~~~l~-~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN-GAE-AVASP----------DEVFA-RDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT-TCE-EESSH----------HHHTT-CSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-CCc-eeCCH----------HHHhc-CCCCCEEE
Confidence 47999998876665555554444577876 4444344434433321 111 12121 12232 34455555
Q ss_pred EecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 102 LSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 102 lTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
++.. ...+.+..++++|..-|+-||+ +.++....+..+.+
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGG
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHh
Confidence 5443 3455678899999999999994 56776666655533
No 266
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=34.01 E-value=2.2e+02 Score=28.70 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---C--CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC--CC
Q 009670 56 AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL---E--MDLPVVMLSAYSDTKLVMKGINHGACDYLLKP--VR 128 (529)
Q Consensus 56 a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~---~--~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP--~~ 128 (529)
..+.++.+... .+|.|++|+.=.-.+--.+.+.++. . ...+++|.+...+...+..+++.|+...++ | -+
T Consensus 52 ~p~~~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gIml-P~V~s 128 (339)
T 1izc_A 52 STFVTKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVI-PHVET 128 (339)
T ss_dssp CHHHHHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEE-TTCCC
T ss_pred CHHHHHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEe-CCCCC
Confidence 33444444443 4999999985433343333333331 1 237899999988999999999999987555 5 46
Q ss_pred HHHHHHHHHHH
Q 009670 129 MEELKNTWQHV 139 (529)
Q Consensus 129 ~eeL~~~l~~v 139 (529)
.+++..+...+
T Consensus 129 aee~~~~~~~~ 139 (339)
T 1izc_A 129 VEEVREFVKEM 139 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777766553
No 267
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.94 E-value=17 Score=29.48 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 009670 221 ILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEAGMVAS 261 (529)
Q Consensus 221 IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~~~~~~~g~~~ 261 (529)
||.++. .++|..|||..|+....+++.|-....++.|+..
T Consensus 37 Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~ 76 (90)
T 3ulq_B 37 ILQEVE-KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGS 76 (90)
T ss_dssp HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 443333 7899999999999666666766665555565543
No 268
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=33.74 E-value=2.7e+02 Score=28.19 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=29.2
Q ss_pred CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 94 EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 94 ~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
...+|+|++-...+.. +.++.| ..+++.+ +.++|..++..++.
T Consensus 318 a~g~PvV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 318 GMGVPVLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp GTTCCEEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred HhCCCEEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 3468988763333332 245677 5677766 89999999998875
No 269
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=33.70 E-value=1.4e+02 Score=25.16 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=42.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
.+|..||-++...+..+..++..+..+. ...+..+.+..+......+|+|++|.... .+--++++.+
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~ 131 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGEL 131 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHH
Confidence 4599999999999999988876554444 34566665544443223599999995332 2223444443
No 270
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=33.68 E-value=2.1e+02 Score=24.23 Aligned_cols=70 Identities=17% Similarity=0.329 Sum_probs=41.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-CCH----HHHHHHHHhc--CCCceEEEEecCCCCCCHHHHHHHHh--cC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT-NRA----ITALKMLREN--RNNFDLVISDVYMPDMDGFKLLELVG--LE 94 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a-~sa----~eALe~L~e~--~~~pDLVIlDi~MPdmdGleLL~~Ir--~~ 94 (529)
|||.|+-| +...... +-.|+....+ .+. +++.+.+++. +.++.+|++.- .+++.++ ..
T Consensus 1 MKIaVIGD-~Dtv~GF----rLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte--------~ia~~i~~~~~ 67 (111)
T 2qai_A 1 MKIVVMGD-SDTVVGF----RLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITE--------RLAQRIGSLPE 67 (111)
T ss_dssp CEEEEEEC-HHHHHHH----HHHTCSEEEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEH--------HHHHHHCSCCC
T ss_pred CEEEEEEC-HHHHHHH----HHcCCceEEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcH--------HHHhhcccccc
Confidence 78999998 4433332 2347776666 555 5655555542 23688888874 2556666 55
Q ss_pred CCCcEEEEecCC
Q 009670 95 MDLPVVMLSAYS 106 (529)
Q Consensus 95 ~~ipVIvlTa~~ 106 (529)
.+.|+|+.-...
T Consensus 68 i~~P~IleIPs~ 79 (111)
T 2qai_A 68 VKFPIILQIPDK 79 (111)
T ss_dssp CSSSEEEEECTT
T ss_pred cCCCEEEEECCC
Confidence 558877664443
No 271
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=33.42 E-value=52 Score=30.12 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=33.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
||+|||=-.-....+.+.|++.|++++++.+.++. .. +|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 69999976666777888999999999988876543 21 677776
No 272
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=33.09 E-value=1.7e+02 Score=27.79 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=39.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy-~V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
..+|+.+|-++...+.++..+++.|+ .+. ...++.+....+......+|+|++|.
T Consensus 108 ~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 108 KGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 36899999999999999999988776 344 44676665443321223599999994
No 273
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=33.03 E-value=45 Score=30.55 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcC-CCCcEEE--EecCCCHHHHHHHHhcCCcEeEeCCCCH-
Q 009670 56 AITALKMLRENRNNFDLVISDVYMPD--MDGFKLLELVGLE-MDLPVVM--LSAYSDTKLVMKGINHGACDYLLKPVRM- 129 (529)
Q Consensus 56 a~eALe~L~e~~~~pDLVIlDi~MPd--mdGleLL~~Ir~~-~~ipVIv--lTa~~d~e~v~~al~~GA~DYL~KP~~~- 129 (529)
.+++++.++.....+|++=. .+|- ..|+++++.++.. +++||.+ ++.......+..+.++||+..++-....
T Consensus 12 ~~~~~~~~~~~~~~~diie~--G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~ 89 (211)
T 3f4w_A 12 LPEAMVFMDKVVDDVDIIEV--GTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDV 89 (211)
T ss_dssp HHHHHHHHHHHGGGCSEEEE--CHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCH
T ss_pred HHHHHHHHHHhhcCccEEEe--CcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCh
Confidence 34444444432223554322 2232 3477888877654 6778743 2333333338889999998888754443
Q ss_pred HHHHHHHHHH
Q 009670 130 EELKNTWQHV 139 (529)
Q Consensus 130 eeL~~~l~~v 139 (529)
+.+...++.+
T Consensus 90 ~~~~~~~~~~ 99 (211)
T 3f4w_A 90 LTIQSCIRAA 99 (211)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3344444443
No 274
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=32.90 E-value=55 Score=31.52 Aligned_cols=105 Identities=12% Similarity=0.027 Sum_probs=59.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEecC---------CCCCCHHHHHHHHh
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVY---------MPDMDGFKLLELVG 92 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a--~sa~eALe~L~e~~~~pDLVIlDi~---------MPdmdGleLL~~Ir 92 (529)
++++|+.+.+ ....++++.+..+-.|... -+..+..+++.. .|++++-.. ..+.-|+.+++.+.
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 5566666543 2233333333322233332 233444555543 567766433 12334666777654
Q ss_pred cCCCCcEEEEecCCCHHHHHHHHhc--CCcEeEeCCCCHHHHHHHHHHHH
Q 009670 93 LEMDLPVVMLSAYSDTKLVMKGINH--GACDYLLKPVRMEELKNTWQHVI 140 (529)
Q Consensus 93 ~~~~ipVIvlTa~~d~e~v~~al~~--GA~DYL~KP~~~eeL~~~l~~vl 140 (529)
..+|||..- .. ...+.++. |..+++..| +.++|.+++..++
T Consensus 264 --~G~PvI~s~-~~---~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 264 --SGTPVVGTG-NG---CLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp --TTCCEEECC-TT---THHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred --cCCCEEEcC-CC---ChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 357887543 22 25566677 888999999 9999999887664
No 275
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=32.56 E-value=1.9e+02 Score=29.71 Aligned_cols=77 Identities=17% Similarity=0.045 Sum_probs=48.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH-HhcCCCCc
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE---VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLEL-VGLEMDLP 98 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~---V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~-Ir~~~~ip 98 (529)
-+|+.||-++...+.+++-++..+.+ +. ...++.+.+.. .....+|+|++|. ++.. .++++. ++.-..--
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~--~~~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK--EWGFGFDYVDLDP--FGTP-VPFIESVALSMKRGG 152 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS--CCSSCEEEEEECC--SSCC-HHHHHHHHHHEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH--hhCCCCcEEEECC--CcCH-HHHHHHHHHHhCCCC
Confidence 47999999999999999999987764 55 33566555430 2223599999997 3321 245542 22111112
Q ss_pred EEEEecC
Q 009670 99 VVMLSAY 105 (529)
Q Consensus 99 VIvlTa~ 105 (529)
+|++|..
T Consensus 153 ll~~t~t 159 (392)
T 3axs_A 153 ILSLTAT 159 (392)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 6666653
No 276
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=32.42 E-value=48 Score=30.08 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=32.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRA---ITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa---~eALe~L~e~~~~pDLVIl 75 (529)
+||+|||.-..+...+.+.|++.|+++...... ++..+.+... ..+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 479999966667777888888889987766443 3333433221 12556665
No 277
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=31.96 E-value=3.8e+02 Score=26.53 Aligned_cols=88 Identities=18% Similarity=0.084 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCCeEE--EE---CCHHHHHHHHHhcCCCceEEEEecC--------------------CC-CCCHHHHH
Q 009670 35 CLKILEKFLRECQYEVT--VT---NRAITALKMLRENRNNFDLVISDVY--------------------MP-DMDGFKLL 88 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~--~a---~sa~eALe~L~e~~~~pDLVIlDi~--------------------MP-dmdGleLL 88 (529)
+.+.++.+-+..+..|. .+ .+.++|..+.+. ..|.|++.-+ +. +....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 34455554444454444 23 466666655543 3787777421 11 34556666
Q ss_pred HHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 89 ELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 89 ~~Ir~~-~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
+.++.. .++|||.-.+-.+.+.+.+++.+||+...+-
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 655433 4799999999999999999999999987654
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=31.79 E-value=62 Score=31.86 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=29.5
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCC
Q 009670 23 GMRVLAVDDDQT---CLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMD 83 (529)
Q Consensus 23 ~mrVLIVDDd~~---v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmd 83 (529)
|.+|++++-|+. ..+.+..+.+..+..+....+..+....+... ..+|+||+| .++.+
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 467777776652 22233333333444433334444433333333 358999999 45444
No 279
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=31.73 E-value=2e+02 Score=27.93 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=60.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECC-HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVT-VTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~s-a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
+||.||.--..-...+..+.+..+++++ .+.. .+.+.+..+... +. .. +--+ .+. .+++-+|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~--~~-------~~~~---~l~-~~~~D~V~ 68 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYG--CE--VR-------TIDA---IEA-AADIDAVV 68 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTT--CE--EC-------CHHH---HHH-CTTCCEEE
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhC--CC--cC-------CHHH---Hhc-CCCCCEEE
Confidence 7899998876655555544444577876 4443 333333333321 22 21 2122 232 34455555
Q ss_pred EecC--CCHHHHHHHHhcCCcEeEeCC--CCHHHHHHHHHHHHHh
Q 009670 102 LSAY--SDTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIRR 142 (529)
Q Consensus 102 lTa~--~d~e~v~~al~~GA~DYL~KP--~~~eeL~~~l~~vlr~ 142 (529)
++.. ...+.+..++++|..-|+-|| .+.++..+.+..+.+.
T Consensus 69 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~ 113 (331)
T 4hkt_A 69 ICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDT 113 (331)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred EeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHc
Confidence 5443 345668889999999999999 4677777766665443
No 280
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=31.72 E-value=31 Score=32.31 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=36.0
Q ss_pred CceEEEEecCCCCCC-------HHHHHHHHhcC-----CCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 69 NFDLVISDVYMPDMD-------GFKLLELVGLE-----MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 69 ~pDLVIlDi~MPdmd-------GleLL~~Ir~~-----~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
..|.|+++-..|+.. +++.++.++.. .++|+++.-+-. .+.+.+++++||+.+.+=
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvg 207 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAG 207 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEES
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 468888887777543 34444544422 267776655544 677777889999887653
No 281
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=31.50 E-value=2.6e+02 Score=27.48 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=63.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECC-HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNR-AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~s-a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
.+||.||.--..-...+..+.+. .+++++ .+.. .+.+.+..++. .+-..+ |--+++ . .+++-+
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~----~~~~~~------~~~~ll---~-~~~~D~ 78 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT----GARGHA------SLTDML---A-QTDADI 78 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH----CCEEES------CHHHHH---H-HCCCSE
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc----CCceeC------CHHHHh---c-CCCCCE
Confidence 48999998876666666555554 478866 4443 33343333332 222221 222233 2 234555
Q ss_pred EEEecCC--CHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 100 VMLSAYS--DTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~~--d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
|+++... ..+.+.+++++|..-|+-||+ +.++..+.++.+.+.
T Consensus 79 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~ 125 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKA 125 (354)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 5555443 355678899999999999995 567777666665443
No 282
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=30.96 E-value=1.3e+02 Score=27.44 Aligned_cols=93 Identities=14% Similarity=0.026 Sum_probs=46.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhc-CCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDM-DGFKLLELVGL-EMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdm-dGleLL~~Ir~-~~~ipV 99 (529)
+..|.++|.++.....+. +..++.+.... .-.+.++.. .-...|+||+-. ++. .-..++...+. .+...|
T Consensus 23 g~~v~vid~~~~~~~~l~---~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~--~~d~~n~~~~~~a~~~~~~~~i 95 (218)
T 3l4b_C 23 KYGVVIINKDRELCEEFA---KKLKATIIHGDGSHKEILRDA--EVSKNDVVVILT--PRDEVNLFIAQLVMKDFGVKRV 95 (218)
T ss_dssp TCCEEEEESCHHHHHHHH---HHSSSEEEESCTTSHHHHHHH--TCCTTCEEEECC--SCHHHHHHHHHHHHHTSCCCEE
T ss_pred CCeEEEEECCHHHHHHHH---HHcCCeEEEcCCCCHHHHHhc--CcccCCEEEEec--CCcHHHHHHHHHHHHHcCCCeE
Confidence 467788888776554433 23455554321 112333332 122578888644 322 12223334443 566666
Q ss_pred EEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 100 VMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 100 IvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
|+.+... +......++||+..+.
T Consensus 96 ia~~~~~--~~~~~l~~~G~d~vi~ 118 (218)
T 3l4b_C 96 VSLVNDP--GNMEIFKKMGITTVLN 118 (218)
T ss_dssp EECCCSG--GGHHHHHHHTCEECCC
T ss_pred EEEEeCc--chHHHHHHCCCCEEEC
Confidence 6655443 3444456788865443
No 283
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=30.93 E-value=1.7e+02 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=19.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVT 53 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a 53 (529)
|||||..-.-.+-..+.+.|.+.|++|+..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~ 30 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 567777766666666666665666666543
No 284
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=30.78 E-value=1.2e+02 Score=30.04 Aligned_cols=94 Identities=10% Similarity=-0.029 Sum_probs=56.4
Q ss_pred EEEEeCCHHHHH----HHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCc
Q 009670 26 VLAVDDDQTCLK----ILEKFLRECQY--EVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLP 98 (529)
Q Consensus 26 VLIVDDd~~v~~----~L~~~Le~~gy--~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ip 98 (529)
|||-|++-...- .++..-+..++ -.+.+.+.+++.+.++. ..|+|.+|-.-|+ +-.+.++.++. .+++
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~-~~~~~v~~l~~~~~~v- 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW-QTQTAVQRRDSRAPTV- 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH-HHHHHHHHHHHHCTTC-
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccCCCe-
Confidence 577666543322 23332222332 23367788999888864 4899999984331 12223344432 2343
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.|..++--+.+.+.+..+.|++.|.+
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 56678888888899999999877653
No 285
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=30.61 E-value=1.1e+02 Score=31.87 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDMDG-FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdG-leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+.++.+.+. .+|+|++|.....-.. .++++.++...++|||+= .-...+.+..+.++||+....
T Consensus 146 ~e~~~~lvea--GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHH--TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 4445555444 3999999976532222 577777766557888752 224577888899999998877
No 286
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=30.52 E-value=49 Score=31.92 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCC--CCCHHHHHHHHhcCCCCcEEEEecC-CCHHHHHHHHhcCCcEeEe
Q 009670 57 ITALKMLRENRNNFDLVISDVYMP--DMDGFKLLELVGLEMDLPVVMLSAY-SDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MP--dmdGleLL~~Ir~~~~ipVIvlTa~-~d~e~v~~al~~GA~DYL~ 124 (529)
.++++.+.+.- .|+|.+.+.-. -.+-+++++.+|. .++|+|+++.. ... ..|++.+|.
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 287
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=30.36 E-value=1.8e+02 Score=25.44 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=38.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEecCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENRNNFDLVISDVYM 79 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy-~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~M 79 (529)
.+|.-||-++...+..+..++..+. .+. ...+..+.+..+. ...+|+|++|.-.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPY 123 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCC
Confidence 4799999999999999998877664 344 4567666543321 2359999998543
No 288
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=30.35 E-value=4.1e+02 Score=26.62 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=62.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--------CCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRE--------CQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~--------~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
.++||-||---..-...+..+.+. .+++++ ++. +.+.|.+..++.. ..-+..|+ - +++
T Consensus 25 ~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~--~~~~y~d~-------~---~ll 92 (412)
T 4gqa_A 25 ARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLG--AEKAYGDW-------R---ELV 92 (412)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-------H---HHH
T ss_pred ccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcC--CCeEECCH-------H---HHh
Confidence 458999998765544434333321 134655 444 3444444444432 22233332 1 233
Q ss_pred hcCCCCcEEEEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 92 GLEMDLPVVMLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 92 r~~~~ipVIvlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
. .+++-+|+++.. ...+.+.+|+++|..=|+-||+ +.++..+.+..+.+.
T Consensus 93 ~-~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 146 (412)
T 4gqa_A 93 N-DPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRA 146 (412)
T ss_dssp H-CTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHH
T ss_pred c-CCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHh
Confidence 3 345556656544 4456788999999999999995 677777777766443
No 289
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=30.15 E-value=2.1e+02 Score=27.74 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCeEEEECC-----HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009670 36 LKILEKFLRECQYEVTVTNR-----AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~~a~s-----a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~ 105 (529)
...+++.+++.||++..+.+ ..+.++.+... .+|.||+-- +.. .-.+.+..+..+++|+|++...
T Consensus 26 ~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~--~~dgIi~~~--~~~-~~~~~~~a~~~p~~p~v~id~~ 95 (318)
T 2fqx_A 26 WEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADE--NMGLVVACG--SFL-VEAVIETSARFPKQKFLVIDAV 95 (318)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHT--TCSEEEEES--TTT-HHHHHHHHHHCTTSCEEEESSC
T ss_pred HHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHc--CCCEEEECC--hhH-HHHHHHHHHHCCCCEEEEEcCc
Confidence 34566677778999775421 23455555544 499888732 111 1123333445678999999764
No 290
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=30.14 E-value=1.7e+02 Score=28.55 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.++++.++...++||++=.+-.+.+.+.++ .||+..++-
T Consensus 191 ~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 477888877778999988888889999886 899998764
No 291
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=30.12 E-value=1.6e+02 Score=24.60 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=51.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVML 102 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvl 102 (529)
.|+.|+--.++.....++.+|+..| +++.+.|.+|+...| .-+-.|++++
T Consensus 22 ~M~eL~ra~d~v~a~~~k~LLe~aG----------------------I~~fv~De~ms~~~G--------eIg~~P~rwl 71 (97)
T 2hfv_A 22 HLRELLRTNDAVLLSAVGALLDGAD----------------------IGHLVLDQNMSILEG--------SLGVIPRRVL 71 (97)
T ss_dssp SEEEEEEECCHHHHHHHHHHHHHTT----------------------CCEECCSCCCCSSSC--------CSSSSCEEEE
T ss_pred cceeeeecCCHHHHHHHHHHHHhCC----------------------CCEEEcCCcchhhcC--------ccccCcEEEE
Confidence 4899999999999999999987755 567788888877665 2234578888
Q ss_pred ecCCCHHHHHHHH-hcCCc
Q 009670 103 SAYSDTKLVMKGI-NHGAC 120 (529)
Q Consensus 103 Ta~~d~e~v~~al-~~GA~ 120 (529)
....+.+.+++.+ ++|..
T Consensus 72 V~eed~~~Ar~LL~~~~~~ 90 (97)
T 2hfv_A 72 VHEDDLAGARRLLTDAGLA 90 (97)
T ss_dssp EEGGGHHHHHHHHHHTTCC
T ss_pred EChhhHHHHHHHHHHcCCc
Confidence 8888888888777 56653
No 292
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=30.01 E-value=75 Score=30.70 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCC------HHHHHHHHhcCCCCcEEEEecC-CCHHHHHHHHhcCCcEeEe
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDMD------GFKLLELVGLEMDLPVVMLSAY-SDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmd------GleLL~~Ir~~~~ipVIvlTa~-~d~e~v~~al~~GA~DYL~ 124 (529)
.++++.+.+.- .|+|.+.. .+ .+++++.+|. .++|||+++.. ... ..|++.||+
T Consensus 23 ~~~~~~l~~~G--aD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i-------~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI-------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC-------CSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccc-------cCCCCEEEE
No 293
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=29.98 E-value=1.2e+02 Score=29.23 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCCcEEEEecCC--CHH--HHHHHHhcCCcEeEeCCCC--HHHHHHHHHHH
Q 009670 84 GFKLLELVGLEMDLPVVMLSAYS--DTK--LVMKGINHGACDYLLKPVR--MEELKNTWQHV 139 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVIvlTa~~--d~e--~v~~al~~GA~DYL~KP~~--~eeL~~~l~~v 139 (529)
|..+++.+. ..+|||+..... +.+ ......+.|. +++..|-+ .++|.+++..+
T Consensus 264 ~~~~~EAma--~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAA--AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHH--HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHH--hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 677777553 247888764321 211 1334557787 99998855 88888887754
No 294
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=29.83 E-value=38 Score=26.63 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCchhhhhhhh
Q 009670 221 ILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGAL 275 (529)
Q Consensus 221 IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~~~~~~~g~~~l~~sd~~~l~~aa~ 275 (529)
|+.+ ...++|..|||..|+....+++.+-....++.+... ...+..+|..
T Consensus 29 vl~l-~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~----~~~l~~~a~~ 78 (82)
T 1je8_A 29 ILKL-IAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKS----RVEAAVWVHQ 78 (82)
T ss_dssp HHHH-HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS----HHHHHHHHHH
T ss_pred HHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC----HHHHHHHHHH
Confidence 4443 367899999999998555555655543344444332 3344544443
No 295
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=29.82 E-value=1.9e+02 Score=29.46 Aligned_cols=76 Identities=9% Similarity=0.062 Sum_probs=48.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLREC---------------QYE-VT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK 86 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~---------------gy~-V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGle 86 (529)
.+|+.+|-++...+.+++-++.. +.. +. ...++.+.+... ...+|+|++|- |+ ...+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~~-~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--FG-SPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--SS-CCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--CC-CHHH
Confidence 57999999999999999988876 654 44 456776665433 23599999985 32 3345
Q ss_pred HHHH-HhcCCCCcEEEEecC
Q 009670 87 LLEL-VGLEMDLPVVMLSAY 105 (529)
Q Consensus 87 LL~~-Ir~~~~ipVIvlTa~ 105 (529)
+++. ++.-..--+|++|..
T Consensus 146 ~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 5542 221111126666653
No 296
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=29.77 E-value=1.3e+02 Score=26.11 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=38.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
.+.+|.++..... ..+|++.+..+..+.+..++++++...+ +|+++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecH
Confidence 4678888877652 3455667888888999999999998764 99999984
No 297
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=29.64 E-value=81 Score=31.47 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=46.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 69 NFDLVISDVYMPDMDGFKLLELVGLEM--DLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 69 ~pDLVIlDi~MPdmdGleLL~~Ir~~~--~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
..+||.+|+.- ..-..++++.++... .+||++=-+-.+.+.+.+++++||+..++--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 35899999754 334468888886555 8999998899999999999999999998765
No 298
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=29.63 E-value=83 Score=33.03 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=62.1
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEEEE--C--------------------------CHHHHHHHHHhcCCCceEEEEecCC
Q 009670 30 DDDQTCLKILEKFLRECQY--EVTVT--N--------------------------RAITALKMLRENRNNFDLVISDVYM 79 (529)
Q Consensus 30 DDd~~v~~~L~~~Le~~gy--~V~~a--~--------------------------sa~eALe~L~e~~~~pDLVIlDi~M 79 (529)
+++....+.+++.++..|| +|... . +..++++.+...-++++|+.+.==+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4566677778888876665 33211 1 4577776654321237788886655
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcEe-EeCCC---CHHHHHHHHHH
Q 009670 80 PDMDGFKLLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACDY-LLKPV---RMEELKNTWQH 138 (529)
Q Consensus 80 PdmdGleLL~~Ir~~~~ipVIvlTa~---~d~e~v~~al~~GA~DY-L~KP~---~~eeL~~~l~~ 138 (529)
+..| ++-.+.++....+||+ ... .+.....++++.|++++ ++|+- .+.+.++++..
T Consensus 299 ~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGitea~~ia~l 361 (436)
T 2al1_A 299 AEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQD 361 (436)
T ss_dssp CTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHH
T ss_pred CCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHH
Confidence 5444 4444445444556663 444 35788999999998775 56764 34444444443
No 299
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.46 E-value=2e+02 Score=26.55 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCC
Q 009670 36 LKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYS 106 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~~a~---sa~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~ 106 (529)
...+++.+++.||.+..+. +.. +.++.+... .+|-||+--..+ -+.++.+. ...+|||++....
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~~~ 95 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN----PQTVQEIL-HQQMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC----HHHHHHHH-TTSSCEEEESCCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc----HHHHHHHH-HCCCCEEEEeccc
Confidence 3445566677899987653 222 344445443 488887754333 45566554 3578999886543
No 300
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=29.43 E-value=3.5e+02 Score=26.49 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=60.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||---..-...+..+.+..+++++ .+. +.+.+.+..+... +.. . .|-- +.+. .+++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g--~~~-~-------~~~~---~~l~-~~~~D~V 70 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN--CAG-D-------ATME---ALLA-REDVEMV 70 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHT--CCC-C-------SSHH---HHHH-CSSCCEE
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC--CCC-c-------CCHH---HHhc-CCCCCEE
Confidence 37899998876555444433333477866 444 3444443333321 111 1 1222 2232 3345555
Q ss_pred EEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 101 MLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+++.. ...+.+..++++|..-|+-||+ +.++..+.+..+.+.
T Consensus 71 ~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (354)
T 3db2_A 71 IITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET 116 (354)
T ss_dssp EECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 55443 3456778899999999999994 567777776665543
No 301
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=29.29 E-value=3e+02 Score=25.42 Aligned_cols=89 Identities=7% Similarity=-0.057 Sum_probs=60.5
Q ss_pred CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcE
Q 009670 46 CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACD 121 (529)
Q Consensus 46 ~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~D 121 (529)
.|..+. -+.+..|+.+.++. ..|.|-+ .|. .- |++.++.++. .+++|++.+-+-. .+.+.+.+.+|++.
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~ 175 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLL 175 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBS
T ss_pred hCCCEEecCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcE
Confidence 344433 57788898887764 3787766 453 33 8899887764 4589988665554 67888999999876
Q ss_pred eE-----eCCCCHHHHHHHHHHHHHh
Q 009670 122 YL-----LKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 122 YL-----~KP~~~eeL~~~l~~vlr~ 142 (529)
.. .+ -+++++....+.++..
T Consensus 176 vavgSai~~-~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 176 AVGGSWLLQ-GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp CEEESGGGS-SCHHHHHHHHHHHHHH
T ss_pred EEEehhhhC-CCHHHHHHHHHHHHHH
Confidence 53 33 4566677777766544
No 302
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=29.21 E-value=91 Score=28.28 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~-~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+..++...++. .+|+|-.... ..-|+++++.++.. +++||+...+-. .+.+.+++.+||+.+..
T Consensus 113 t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 45666655543 3676654321 12377888777544 378888777665 56888999999988754
No 303
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=29.08 E-value=1.2e+02 Score=30.51 Aligned_cols=106 Identities=10% Similarity=0.106 Sum_probs=59.0
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDD-QTCLKILEKFLRECQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd-~~v~~~L~~~Le~~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
.+||.||--- ..-...+..+.+..+++++ ++. +.+.+.+..++.. +. +.. |--+++ . .+++-+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~-~~~-------~~~ell---~-~~~vD~ 67 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYG--IP-VFA-------TLAEMM---Q-HVQMDA 67 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHT--CC-EES-------SHHHHH---H-HSCCSE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcC--CC-eEC-------CHHHHH---c-CCCCCE
Confidence 3788888877 3333344444333567766 343 3333433333321 22 121 222233 2 234555
Q ss_pred EEEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 100 VMLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
|+++.. ...+.+.+++++|..-|+-||+ +.++..+.+..+.+.
T Consensus 68 V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 114 (387)
T 3moi_A 68 VYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERA 114 (387)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHh
Confidence 555443 3456788899999999999995 567777766665443
No 304
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=28.73 E-value=2.1e+02 Score=28.46 Aligned_cols=66 Identities=11% Similarity=0.001 Sum_probs=45.0
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 51 TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 51 ~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
+.+.+.+|+.+.++. ..|+|.+|-.-| -++-+.++....-..|..|+--+.+.+.+..+.|++.+-
T Consensus 203 VEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 203 VEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 367899999998875 389999997433 222222221112245668888888889898899987653
No 305
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=28.68 E-value=52 Score=29.65 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=44.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE-ecCCCCCCHHHHHHHHhc--CCCCcEE
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVIS-DVYMPDMDGFKLLELVGL--EMDLPVV 100 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIl-Di~MPdmdGleLL~~Ir~--~~~ipVI 100 (529)
|.|+|+|-.......+.+.|++.|+++..+.... .++.+... .+|.||+ .-.-|+..+. +.+.++. ..++||+
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~--~~dglil~Gg~~~~~~~~-~~~~i~~~~~~~~Pil 76 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAM--NPKGIIFSGGPSLENTGN-CEKVLEHYDEFNVPIL 76 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHT--CCSEEEECCCSCTTCCTT-HHHHHHTGGGTCSCEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhccc--CCCEEEECCCCChhhhhh-HHHHHHHHhhCCCeEE
Confidence 4599999887777888999999999877664332 22223322 3786665 2212222231 2333332 3467887
Q ss_pred EEec
Q 009670 101 MLSA 104 (529)
Q Consensus 101 vlTa 104 (529)
-+..
T Consensus 77 GIC~ 80 (189)
T 1wl8_A 77 GICL 80 (189)
T ss_dssp EETH
T ss_pred EEcH
Confidence 6653
No 306
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=28.54 E-value=83 Score=33.06 Aligned_cols=106 Identities=11% Similarity=0.227 Sum_probs=61.2
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEEE--EC-------------------------CHHHHHHHHHhcCCCceEEEEecCCC
Q 009670 30 DDDQTCLKILEKFLRECQY--EVTV--TN-------------------------RAITALKMLRENRNNFDLVISDVYMP 80 (529)
Q Consensus 30 DDd~~v~~~L~~~Le~~gy--~V~~--a~-------------------------sa~eALe~L~e~~~~pDLVIlDi~MP 80 (529)
+++....+.+++.++..|| ++.. -. +..++++.+.+.-++++++.+.==++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4566677788888876565 3221 11 45776666543212367888866555
Q ss_pred CCCHHHHHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcEe-EeCCC---CHHHHHHHHHH
Q 009670 81 DMDGFKLLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACDY-LLKPV---RMEELKNTWQH 138 (529)
Q Consensus 81 dmdGleLL~~Ir~~~~ipVIvlTa~---~d~e~v~~al~~GA~DY-L~KP~---~~eeL~~~l~~ 138 (529)
..| ++-.+.++....+||+ ... .+.....++++.|++++ ++|+- .+.+.++++..
T Consensus 297 ~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~~ia~l 358 (439)
T 2akz_A 297 QDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKL 358 (439)
T ss_dssp TTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHH
T ss_pred ccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHH
Confidence 444 3334444433456663 444 36788999999997765 56764 33444444443
No 307
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=28.49 E-value=1.6e+02 Score=29.75 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=41.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY---EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy---~V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
-+|+-||-++...+..+.-++..++ .+. ...++.+.+..+......+|+||+|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999998887777 454 56788777665543233699999995
No 308
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=28.47 E-value=1.3e+02 Score=30.23 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=45.8
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 50 VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 50 V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
.+.+.+.+|+.+.++. ..|+|.+|-.-| -++-+.++....-..|..|+--+.+.+.+..+.|++.+-
T Consensus 211 eVEv~tl~e~~eAl~a---GaDiImLDn~s~----~~l~~av~~~~~~v~leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 211 AIECDNISQVEESLSN---NVDMILLDNMSI----SEIKKAVDIVNGKSVLEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTSSEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHhhcCceEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3367899999999875 389999996433 222222221112346778888888889888899986653
No 309
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=28.37 E-value=2.1e+02 Score=29.04 Aligned_cols=86 Identities=15% Similarity=0.008 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC----C-CCCHHHHHHHHhc-C-CCCcEEEEecCCC
Q 009670 37 KILEKFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYM----P-DMDGFKLLELVGL-E-MDLPVVMLSAYSD 107 (529)
Q Consensus 37 ~~L~~~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~M----P-dmdGleLL~~Ir~-~-~~ipVIvlTa~~d 107 (529)
+.++.+-+..+..|. .+.+.++|..+++. .+|.|.+.-+- . ...-++.+..++. . .++|||.-.+-..
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 445555555555554 35677777766653 48888874321 1 1134566665543 2 3799999999999
Q ss_pred HHHHHHHHhcCCcEeEeC
Q 009670 108 TKLVMKGINHGACDYLLK 125 (529)
Q Consensus 108 ~e~v~~al~~GA~DYL~K 125 (529)
...+.+++.+||+...+-
T Consensus 292 ~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 292 GTDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEeec
Confidence 999999999999987553
No 310
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=28.35 E-value=2.5e+02 Score=23.16 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=49.3
Q ss_pred ccEEEEEeCCHH-----HHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCC
Q 009670 23 GMRVLAVDDDQT-----CLKILEKFLRECQYE-V-TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEM 95 (529)
Q Consensus 23 ~mrVLIVDDd~~-----v~~~L~~~Le~~gy~-V-~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~ 95 (529)
.+|||+|-+.-. +...+++.+++.+++ + +.+.+..++...+ . .+|+||+-..++.. ....+
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~--~--~~DlIi~t~~l~~~--------~~~~~ 85 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLA--S--NYDIVVASNHLIHE--------LDGRT 85 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHG--G--GCSEEEEETTTGGG--------TTTSC
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhcc--C--CCcEEEECCchHHH--------hCcCC
Confidence 478999987743 233556677777876 4 3455666655443 1 48999998766521 11235
Q ss_pred CCcEEEEecCCCHHHHHHH
Q 009670 96 DLPVVMLSAYSDTKLVMKG 114 (529)
Q Consensus 96 ~ipVIvlTa~~d~e~v~~a 114 (529)
..+++.+...-+.+...+.
T Consensus 86 ~~~vi~i~~~l~~~ei~~~ 104 (110)
T 3czc_A 86 NGKLIGLDNLMDDNEIKTK 104 (110)
T ss_dssp SSEEEEESSTTCHHHHHHH
T ss_pred CceEEEeeccCCHHHHHHH
Confidence 5678887777666655443
No 311
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=28.29 E-value=1.4e+02 Score=29.36 Aligned_cols=79 Identities=24% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCCCCccEEEEEeCC----HHHHHHHHHHHHhCCCeEEEECCHH-----------------------------------
Q 009670 17 IDKFPIGMRVLAVDDD----QTCLKILEKFLRECQYEVTVTNRAI----------------------------------- 57 (529)
Q Consensus 17 ~~~~p~~mrVLIVDDd----~~v~~~L~~~Le~~gy~V~~a~sa~----------------------------------- 57 (529)
.+.-...||||++-.. -.-...+...|.+.|++|..+....
T Consensus 9 ~~~~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 4fzr_A 9 GVPRGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTT 88 (398)
T ss_dssp ------CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCC
T ss_pred CCCCCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccc
Q ss_pred -------------------------HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 009670 58 -------------------------TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLS 103 (529)
Q Consensus 58 -------------------------eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlT 103 (529)
+..+.+++.+ ||+|+.|. ...-|.-+.+.++ +|+|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--pDlVv~d~--~~~~~~~~a~~~g----iP~v~~~ 151 (398)
T 4fzr_A 89 MPREEKPLLEHIGRGYGRLVLRMRDEALALAERWK--PDLVLTET--YSLTGPLVAATLG----IPWIEQS 151 (398)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCTHHHHHHHHHT----CCEEEEC
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEECc--cccHHHHHHHhhC----CCEEEec
No 312
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=28.05 E-value=1.1e+02 Score=31.60 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCe---EE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLREC------QYE---VT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~------gy~---V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP 80 (529)
-+|-+||=|+.+.+..+++|... ..+ +. ...++.+.++...+....+|+||+|+.-+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 58999999999999999987321 111 33 56888888876544334699999998543
No 313
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=28.00 E-value=2.3e+02 Score=28.27 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=44.5
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 51 TVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 51 ~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
+.+.+.+++.+.++. .+|+|.+|-.-| -++-+.++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 214 VEvdtlde~~eAl~a---GaD~I~LDn~~~----~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAH---GARSVLLDNFTL----DMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHT---TCEEEEEESCCH----HHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 358889999888874 489999997332 23333333212224567888888888999899999655
No 314
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=27.85 E-value=91 Score=31.23 Aligned_cols=90 Identities=16% Similarity=0.160 Sum_probs=54.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
..|||+|+.- -.+...+...|.+ .++|..+.-..+.++.+.+. ...+-+|+. |--++.+.++. .+ +|+
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~---~~~~~~d~~----d~~~l~~~~~~-~D--vVi 82 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF---ATPLKVDAS----NFDKLVEVMKE-FE--LVI 82 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT---SEEEECCTT----CHHHHHHHHTT-CS--EEE
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc---CCcEEEecC----CHHHHHHHHhC-CC--EEE
Confidence 3599999987 6677777777865 57888776555666665432 455556652 33334445542 23 333
Q ss_pred Ee--cCCCHHHHHHHHhcCCcEeEe
Q 009670 102 LS--AYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 102 lT--a~~d~e~v~~al~~GA~DYL~ 124 (529)
-+ ..-....+..|++.|+. |+.
T Consensus 83 ~~~p~~~~~~v~~~~~~~g~~-yvD 106 (365)
T 3abi_A 83 GALPGFLGFKSIKAAIKSKVD-MVD 106 (365)
T ss_dssp ECCCGGGHHHHHHHHHHHTCE-EEE
T ss_pred EecCCcccchHHHHHHhcCcc-eEe
Confidence 33 23345667778888874 554
No 315
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=27.38 E-value=62 Score=32.58 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLREC-QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~-gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
+| +.+|.+||=++.+.+..++.+... .-++. ...++.+.++.+. ...+|+||+|...+.
T Consensus 111 ~p-~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 111 YP-QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT--PASRDVIIRDVFAGA 171 (317)
T ss_dssp ST-TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC--TTCEEEEEECCSTTS
T ss_pred CC-CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc--CCCCCEEEECCCCcc
Confidence 45 359999999999999998887532 22344 4577766543221 235999999986553
No 316
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=27.28 E-value=2.9e+02 Score=29.72 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCceE-EEEecCCCCC-C--HHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh-cCCcEeEeC-----
Q 009670 56 AITALKMLRENRNNFDL-VISDVYMPDM-D--GFKLLELVGLEMDLPVVMLSAYSDTKLVMKGIN-HGACDYLLK----- 125 (529)
Q Consensus 56 a~eALe~L~e~~~~pDL-VIlDi~MPdm-d--GleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~-~GA~DYL~K----- 125 (529)
..+..+.+++. .++. ++.|+.-.++ . -+++++.++....+|||.--+-.+.+.+.++++ .||+..+.-
T Consensus 454 ~~e~a~~~~~~--Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEAL--GAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHHT--TCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 34444444443 2554 4456533222 2 367888887667899998888899999999997 899987654
Q ss_pred -CCCHHHHHHHH
Q 009670 126 -PVRMEELKNTW 136 (529)
Q Consensus 126 -P~~~eeL~~~l 136 (529)
++...++++.+
T Consensus 532 ~~~~~~e~~~~l 543 (555)
T 1jvn_A 532 GEFTVNDVKEYL 543 (555)
T ss_dssp TSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 67777766643
No 317
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=27.08 E-value=1.7e+02 Score=29.39 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
.+|+.||-++......+.-++..++. +. ...++.+.+..+......+|+|++|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 57999999999999999988877654 43 56788777665543334699999985
No 318
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=26.94 E-value=2.2e+02 Score=27.82 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=57.7
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEE-EE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCH---------HHHHHHHhcC
Q 009670 27 LAVDDDQTCLKILEKFLRECQYEVT-VT--NRAITALKMLRENRNNFDLVISDVYMPDMDG---------FKLLELVGLE 94 (529)
Q Consensus 27 LIVDDd~~v~~~L~~~Le~~gy~V~-~a--~sa~eALe~L~e~~~~pDLVIlDi~MPdmdG---------leLL~~Ir~~ 94 (529)
+|.|=.+.-...+...+++.|..+. .+ .+..+-++.+.+.. .+.|-+ +...+..| .++++.++..
T Consensus 130 IipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~-vs~~GvTG~~~~~~~~~~~~v~~vr~~ 206 (271)
T 3nav_A 130 LIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYL-LSRAGVTGAETKANMPVHALLERLQQF 206 (271)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEE-CCCC--------CCHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEE-EeccCCCCcccCCchhHHHHHHHHHHh
Confidence 3444444445567777777787744 33 23344444444443 233333 11222222 3567777766
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.++||++=.+-.+.+.+.+++..||+..++-
T Consensus 207 ~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 207 DAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp TCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 6889988777788899988999999999875
No 319
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=26.75 E-value=82 Score=28.28 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
|||||..-.-.+-..+...|.+.|++|+.+....+.+..+.. ..+.++..|+.-++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~ 56 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLT 56 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEeccccccc
Confidence 689999988888888888777779998865443344443322 24788888886554
No 320
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=26.73 E-value=99 Score=29.92 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=51.3
Q ss_pred cEEEEEeC-CHHHH---HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH--HHHHHhcC-CC
Q 009670 24 MRVLAVDD-DQTCL---KILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFK--LLELVGLE-MD 96 (529)
Q Consensus 24 mrVLIVDD-d~~v~---~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGle--LL~~Ir~~-~~ 96 (529)
|||.||-. .+... ..+..+|++.|+++. ...+|+||+ -+.||-= .++.+... .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~---------------~~~~D~vv~----lGGDGT~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD---------------DVEPEIVIS----IGGDGTFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC---------------SSSCSEEEE----EESHHHHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC---------------CCCCCEEEE----EcCcHHHHHHHHHHhhcCCC
Confidence 56666533 33333 345555777787761 124888886 2667743 23343322 47
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
+||+-+.. |=.+|+. .+.++++..++..++..
T Consensus 62 ~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 62 IAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAKG 93 (272)
T ss_dssp CEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHTT
T ss_pred CCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHcC
Confidence 89887732 4455665 56678888888888764
No 321
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=26.72 E-value=54 Score=31.79 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCceEEEEecCCC--CCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 58 TALKMLRENRNNFDLVISDVYMP--DMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 58 eALe~L~e~~~~pDLVIlDi~MP--dmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
++++.+.+. ..|+|++....- ..+-+++++.++. .++|+|++++.. +.+..||+.|+.-
T Consensus 27 ~~l~~~~~~--GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 27 DDLDAICMS--QTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp HHHHHHHTS--SCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred HHHHHHHHc--CCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 344444333 489999877432 2345667777877 899999998864 3346699999875
No 322
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=26.55 E-value=3e+02 Score=28.83 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=60.2
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHh-CCCeEE-EEC-CHHHHHHHHHhcCCCce-EEEEecCCCCCCHHHHHHHHhcC
Q 009670 23 GMRVLAVDD----DQTCLKILEKFLRE-CQYEVT-VTN-RAITALKMLRENRNNFD-LVISDVYMPDMDGFKLLELVGLE 94 (529)
Q Consensus 23 ~mrVLIVDD----d~~v~~~L~~~Le~-~gy~V~-~a~-sa~eALe~L~e~~~~pD-LVIlDi~MPdmdGleLL~~Ir~~ 94 (529)
.+||.||-- -..-...+..+.+. .+++++ ++. +.+.+.+..++.. -++ -+..| -- +.+. .
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g-~~~~~~~~d-------~~---ell~-~ 106 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ-LKHATGFDS-------LE---SFAQ-Y 106 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT-CTTCEEESC-------HH---HHHH-C
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC-CCcceeeCC-------HH---HHhc-C
Confidence 379999987 44444444444443 477866 454 3333444443322 111 22222 11 2332 3
Q ss_pred CCCcEEEEecC--CCHHHHHHHHhcC------CcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 95 MDLPVVMLSAY--SDTKLVMKGINHG------ACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 95 ~~ipVIvlTa~--~d~e~v~~al~~G------A~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
+++-+|+++.. ...+.+.+|+++| ..=|+-||+ +.++..+.+..+.+
T Consensus 107 ~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~ 163 (479)
T 2nvw_A 107 KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQ 163 (479)
T ss_dssp TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 45666666544 3456678899999 778999995 56777666665543
No 323
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=26.55 E-value=53 Score=31.02 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=43.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc--CCCceEEEEecC
Q 009670 20 FPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLREN--RNNFDLVISDVY 78 (529)
Q Consensus 20 ~p~~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~--~~~pDLVIlDi~ 78 (529)
+|.+.+|.-||-++...+..+..++..+. .|. ...++.+.+..+... ...+|+|++|..
T Consensus 82 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 82 LPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD 145 (242)
T ss_dssp SCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC
Confidence 45567999999999888888888887765 354 457887776655321 235999999975
No 324
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=26.48 E-value=2.3e+02 Score=26.77 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=45.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCC--HHH----HHHHHhcCCcEeEe-----CCCCHHHHHHHHH
Q 009670 69 NFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSD--TKL----VMKGINHGACDYLL-----KPVRMEELKNTWQ 137 (529)
Q Consensus 69 ~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d--~e~----v~~al~~GA~DYL~-----KP~~~eeL~~~l~ 137 (529)
.+|+|.+.. + -|+++++.+.....+|||+..+-.. .+. +.++++.||+.... +.-++.+....+.
T Consensus 179 Gad~i~~~~--~--~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~ 254 (273)
T 2qjg_A 179 GADIVKTSY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVC 254 (273)
T ss_dssp TCSEEEECC--C--SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHH
T ss_pred CCCEEEECC--C--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHH
Confidence 489888874 2 4688887775445789999887763 444 66677899988754 2234444444444
Q ss_pred HHHH
Q 009670 138 HVIR 141 (529)
Q Consensus 138 ~vlr 141 (529)
..++
T Consensus 255 ~~~~ 258 (273)
T 2qjg_A 255 KIVH 258 (273)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 325
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=26.38 E-value=2.4e+02 Score=28.92 Aligned_cols=114 Identities=10% Similarity=0.040 Sum_probs=62.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHh---cCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVT-VTNRAITALKMLRE---NRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e---~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
.+||.||---..-...+..+.+..+++++ ++....+..+.+.+ ....++.-+.+- ...| +-+.+. .+++-
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~---~~~ll~-~~~vD 93 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDD---YKNMLK-DKNID 93 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTT---HHHHTT-CTTCC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCC---HHHHhc-CCCCC
Confidence 48999998776655555544433577876 44433333332221 101122222210 1112 222333 34555
Q ss_pred EEEEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 99 VVMLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 99 VIvlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+|+++.. ...+.+.+|+++|..-|+-||+ +.++..+.++.+.+.
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~ 141 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQT 141 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 6555543 3456788899999999999995 577777777666443
No 326
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.29 E-value=1.2e+02 Score=28.62 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCeEEEEC--C---HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCC
Q 009670 36 LKILEKFLRECQYEVTVTN--R---AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYS 106 (529)
Q Consensus 36 ~~~L~~~Le~~gy~V~~a~--s---a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~ 106 (529)
...++..+++.||.+..+. . ..+.++.+... .+|-||+--..+ +. +.++.+.. .+|||++....
T Consensus 30 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~~-~~~~~~~~--~iPvV~i~~~~ 98 (289)
T 3k9c_A 30 VEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRE--RCEAAILLGTRF--DT-DELGALAD--RVPALVVARAS 98 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTT--TEEEEEEETCCC--CH-HHHHHHHT--TSCEEEESSCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhC--CCCEEEEECCCC--CH-HHHHHHHc--CCCEEEEcCCC
Confidence 3455666677899877542 2 34455555433 589877754322 22 55665543 79999886543
No 327
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=26.22 E-value=1.4e+02 Score=28.47 Aligned_cols=56 Identities=21% Similarity=0.060 Sum_probs=37.0
Q ss_pred ccEEEEEeCC--------------------HHHHHHHHHHHHhCCCeEEEECCHH-----------------HHHHHHHh
Q 009670 23 GMRVLAVDDD--------------------QTCLKILEKFLRECQYEVTVTNRAI-----------------TALKMLRE 65 (529)
Q Consensus 23 ~mrVLIVDDd--------------------~~v~~~L~~~Le~~gy~V~~a~sa~-----------------eALe~L~e 65 (529)
.||||+|-.. ......+.+.|.+.|++|..+.... ...+.+++
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 3899999876 2244556667777899988764321 45556665
Q ss_pred cCCCceEEEEecCCC
Q 009670 66 NRNNFDLVISDVYMP 80 (529)
Q Consensus 66 ~~~~pDLVIlDi~MP 80 (529)
. .||+|++-...+
T Consensus 83 ~--~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 83 A--DVDVVHDHSGGV 95 (342)
T ss_dssp C--CCSEEEECSSSS
T ss_pred c--CCCEEEECCchh
Confidence 5 499998865443
No 328
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=26.21 E-value=4.2e+02 Score=25.66 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=60.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 24 MRVLAVDDDQTCLKILEKFLREC--QYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~--gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
+||.||.--..-...+..+.+.. +++++ ++. +.+.+.+..++.. ..-+..|+ - +.+. .+++-+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~--~~~~~~~~-------~---~ll~-~~~vD~ 69 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD--IPKAYGSY-------E---ELAK-DPNVEV 69 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT--CSCEESSH-------H---HHHH-CTTCCE
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC--CCcccCCH-------H---HHhc-CCCCCE
Confidence 68888887766655444333222 34655 343 3444444444332 11122221 1 2232 344555
Q ss_pred EEEec--CCCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 100 VMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa--~~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
|+++. ....+.+.+++++|..=|+-||+ +.++..+.+..+.++
T Consensus 70 V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (334)
T 3ohs_X 70 AYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSR 116 (334)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55543 34456788899999999999996 778877777766443
No 329
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=26.11 E-value=46 Score=32.54 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCcEEEEe------cCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 85 FKLLELVGLEMDLPVVMLS------AYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlT------a~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+++++.++.. +|+|+|+ .+.-.....++.++|+++.|+--+.++| ...+....+++
T Consensus 79 ~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE-~~~~~~~~~~~ 140 (252)
T 3tha_A 79 FELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEE-SDDLIKECERY 140 (252)
T ss_dssp HHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGG-CHHHHHHHHHT
T ss_pred HHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHc
No 330
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=26.08 E-value=4.5e+02 Score=25.85 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=59.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVTV-TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~~-a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||.--..-.......|.. .+++++. +....+. ..+... .+ -+..|+ -+.+. .+++-+|
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~-~~-~~~~~~----------~~ll~-~~~vD~V 69 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE--VKRDFP-DA-EVVHEL----------EEITN-DPAIELV 69 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH--HHHHCT-TS-EEESST----------HHHHT-CTTCCEE
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHhhCC-CC-ceECCH----------HHHhc-CCCCCEE
Confidence 47899998876655434445544 3677763 3322222 112211 11 122222 12232 3455555
Q ss_pred EEecC--CCHHHHHHHHhcCCcEeEeCC--CCHHHHHHHHHHHHHh
Q 009670 101 MLSAY--SDTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~--~d~e~v~~al~~GA~DYL~KP--~~~eeL~~~l~~vlr~ 142 (529)
+++.. ...+.+..|+++|..=|+-|| .+.++..+.+..+.+.
T Consensus 70 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~ 115 (358)
T 3gdo_A 70 IVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEK 115 (358)
T ss_dssp EECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 55544 345678889999999999999 4677777776665543
No 331
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=26.07 E-value=1.7e+02 Score=29.42 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=47.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcC------------CCceEEEEecCCCCCCHHHHHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYE-VT-VTNRAITALKMLRENR------------NNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~-V~-~a~sa~eALe~L~e~~------------~~pDLVIlDi~MPdmdGleLL~ 89 (529)
-+|+-||-++...+..+.-++..++. +. ...++.+.+..+.... ..+|+||+|---.+.. -++++
T Consensus 236 ~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~-~~~~~ 314 (369)
T 3bt7_A 236 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD-SETEK 314 (369)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCC-HHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccccH-HHHHH
Confidence 48999999999999999888877663 44 3466666655443211 1599999984211222 24566
Q ss_pred HHhcCCCCcEEEEe
Q 009670 90 LVGLEMDLPVVMLS 103 (529)
Q Consensus 90 ~Ir~~~~ipVIvlT 103 (529)
.++ +.-.+|+++
T Consensus 315 ~l~--~~g~ivyvs 326 (369)
T 3bt7_A 315 MVQ--AYPRILYIS 326 (369)
T ss_dssp HHT--TSSEEEEEE
T ss_pred HHh--CCCEEEEEE
Confidence 665 222344444
No 332
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=26.06 E-value=4.9e+02 Score=25.79 Aligned_cols=79 Identities=9% Similarity=0.119 Sum_probs=50.3
Q ss_pred hCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCC--CCCH----------HHHHHHH----h-cCCCCcEEEEe-cC
Q 009670 45 ECQYE-VTVTNRAITALKMLRENRNNFDLVISDVYMP--DMDG----------FKLLELV----G-LEMDLPVVMLS-AY 105 (529)
Q Consensus 45 ~~gy~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MP--dmdG----------leLL~~I----r-~~~~ipVIvlT-a~ 105 (529)
+.|+. +..+.+.++|..+.+.. ||+|++..-+- +.-| .+.++.+ + .++++.|+.-. +-
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpI 237 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPI 237 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTC
T ss_pred HCCCeEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 34654 55789999999887653 89998765422 3222 3344322 1 34665444434 34
Q ss_pred CCHHHHHHHHhc--CCcEeEeCC
Q 009670 106 SDTKLVMKGINH--GACDYLLKP 126 (529)
Q Consensus 106 ~d~e~v~~al~~--GA~DYL~KP 126 (529)
...+.+..+++. |+++|+.-.
T Consensus 238 stpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 238 ANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp CSHHHHHHHHHHCTTCCEEEESH
T ss_pred CCHHHHHHHHhcCCCccEEEeeh
Confidence 788899999999 999999864
No 333
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=25.99 E-value=1.8e+02 Score=28.23 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=56.4
Q ss_pred cEEEEEeCCHHHHH-HHHHHHHhCCCeEEEECCHHHHHH-HHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 009670 24 MRVLAVDDDQTCLK-ILEKFLRECQYEVTVTNRAITALK-MLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVM 101 (529)
Q Consensus 24 mrVLIVDDd~~v~~-~L~~~Le~~gy~V~~a~sa~eALe-~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIv 101 (529)
+||.||---..-.. .+..+.+..+++++.+....+..+ ..++.. ...+..| -.++ +. .++-+|+
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g--~~~~~~~-------~~~~---l~--~~~D~V~ 68 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR--VSATCTD-------YRDV---LQ--YGVDAVM 68 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT--CCCCCSS-------TTGG---GG--GCCSEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC--CCccccC-------HHHH---hh--cCCCEEE
Confidence 68888887655543 444443334677775543333333 333321 1111111 1122 21 3455555
Q ss_pred EecCC--CHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 102 LSAYS--DTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 102 lTa~~--d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
++... ..+.+.++++.|..-|+-||+ +.++..+.++.+.+
T Consensus 69 i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 69 IHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred EECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 55433 346677899999988999995 56676666555443
No 334
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=25.99 E-value=89 Score=30.72 Aligned_cols=110 Identities=10% Similarity=0.009 Sum_probs=60.7
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceE-EEEecCCCCCCHHHHHH---HHh-cCCC
Q 009670 23 GMRVLAVDD-DQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDL-VISDVYMPDMDGFKLLE---LVG-LEMD 96 (529)
Q Consensus 23 ~mrVLIVDD-d~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDL-VIlDi~MPdmdGleLL~---~Ir-~~~~ 96 (529)
++||.||.- -..-...+.. |...+.+++.+.+.......+.+.. +.. +..|+ -++++ .+. ..++
T Consensus 3 mirvgiIG~gG~i~~~h~~~-l~~~~~~lvav~d~~~~~~~~~~~~--~~~~~~~~~-------~~ll~~~~~l~~~~~~ 72 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKA-IKEVGGVLVASLDPATNVGLVDSFF--PEAEFFTEP-------EAFEAYLEDLRDRGEG 72 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHH-HHHTTCEEEEEECSSCCCGGGGGTC--TTCEEESCH-------HHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCChHHHHHHHHH-HHhCCCEEEEEEcCCHHHHHHHhhC--CCCceeCCH-------HHHHHHhhhhcccCCC
Confidence 478888887 3344444443 3344777664433221111121111 121 12222 23332 222 3566
Q ss_pred CcEEEEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+-+|+++.. ...+.+.+|+++|..=|+-||+ +.++..+.+..+.+.
T Consensus 73 vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 73 VDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 666666544 4456788999999999999995 667887777766544
No 335
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=25.70 E-value=1.5e+02 Score=28.46 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=54.8
Q ss_pred HHHHhCCC-eEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhc
Q 009670 41 KFLRECQY-EVTVTNRAITALKMLREN-RNNFDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINH 117 (529)
Q Consensus 41 ~~Le~~gy-~V~~a~sa~eALe~L~e~-~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~ 117 (529)
..|++.+. -|....+.++++++.+.. ...+.+|=+.+. ..++++.++.++. .++ .+|-.-.-.+.+.+..++++
T Consensus 29 ~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~Ai~A 105 (232)
T 4e38_A 29 NQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFR--SDAAVEAIRLLRQAQPE-MLIGAGTILNGEQALAAKEA 105 (232)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTT-CEEEEECCCSHHHHHHHHHH
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHHHHc
Confidence 34444443 344556677776665542 124565555444 4568999987764 344 34444445678999999999
Q ss_pred CCcEeEeCCCCHHHHHHHHH
Q 009670 118 GACDYLLKPVRMEELKNTWQ 137 (529)
Q Consensus 118 GA~DYL~KP~~~eeL~~~l~ 137 (529)
||+..+ -|-...++.+..+
T Consensus 106 GA~fIv-sP~~~~~vi~~~~ 124 (232)
T 4e38_A 106 GATFVV-SPGFNPNTVRACQ 124 (232)
T ss_dssp TCSEEE-CSSCCHHHHHHHH
T ss_pred CCCEEE-eCCCCHHHHHHHH
Confidence 996554 5644444444433
No 336
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=25.69 E-value=1.6e+02 Score=29.95 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=40.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY---EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy---~V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
-+|.-||-++...+..+.-++..++ .+. ...++.+.+..+......+|+||+|-
T Consensus 236 ~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 236 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 3899999999999999988887665 344 56788877765543333599999984
No 337
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=25.59 E-value=1.5e+02 Score=26.24 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=38.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
+.+|.++..... ...+...+...+.++..+.+..++++++...+ +|+++.|.
T Consensus 111 g~~v~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVLQGSTQ-EAYANDNWRTKGVDVVAYANQDLIYSDLTAGR--LDAALQDE 162 (239)
T ss_dssp TCEEEEETTSHH-HHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS--CSEEEEEH
T ss_pred CCEEEEEcCccH-HHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC--CCEEEeCc
Confidence 577877766543 34455555445788888999999999998765 99999984
No 338
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=25.53 E-value=3.5e+02 Score=26.62 Aligned_cols=92 Identities=11% Similarity=0.050 Sum_probs=56.8
Q ss_pred EEEEeCCHHHHHHHHHHH----HhCCC--e-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCc
Q 009670 26 VLAVDDDQTCLKILEKFL----RECQY--E-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLP 98 (529)
Q Consensus 26 VLIVDDd~~v~~~L~~~L----e~~gy--~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ip 98 (529)
+||.||+-.+...+...+ +..+. . .+.+.+.+++.+.++.. .|.|.+|-.-|.. --+.++.++ ..+|
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aG---aD~I~ld~~~~~~-~k~av~~v~--~~ip 242 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAG---ADLILLDNFPLEA-LREAVRRVG--GRVP 242 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHT---CSEEEEESCCHHH-HHHHHHHHT--TSSC
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC---CCEEEECCCCHHH-HHHHHHHhC--CCCe
Confidence 688888766543222222 33333 2 23678899999888653 8999999754321 111222332 3567
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+++ ++--+.+.+.+..+.||+.+-+
T Consensus 243 i~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 243 LEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp EEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred EEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 665 5666788899999999877643
No 339
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=25.47 E-value=4.5e+02 Score=25.90 Aligned_cols=90 Identities=11% Similarity=-0.003 Sum_probs=54.5
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcC-CCCc
Q 009670 26 VLAVDDDQTC----LKILEKFLRECQY-E-VTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLE-MDLP 98 (529)
Q Consensus 26 VLIVDDd~~v----~~~L~~~Le~~gy-~-V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~-~~ip 98 (529)
|+|.|.+-.. ...++.+-+..+. . .+.+.+.+++.+.++. ..|.|.+|- ++--++.+.++.. ..++
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~~e~l~~~v~~~~~~~~ 254 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FNTDQMREAVKRVNGQAR 254 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CCHHHHHHHHHTTCTTCC
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCe
Confidence 5666555443 3444444444443 2 4467888888888753 489999986 3333333333322 3455
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
| ..++--+.+.+.+..+.||+.+-
T Consensus 255 I-~ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 255 L-EVSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp E-EECCCSCHHHHHHHHHTTCSEEE
T ss_pred E-EEECCCCHHHHHHHHHcCCCEEE
Confidence 4 45666688999999999995553
No 340
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=25.39 E-value=2.3e+02 Score=27.56 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=59.9
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEE-EE--CCHHHHHHHHHhcCCCceEEEEecCCC--C------CCHHHHHHH
Q 009670 23 GMRVLAV-DDDQTCLKILEKFLRECQYEVT-VT--NRAITALKMLRENRNNFDLVISDVYMP--D------MDGFKLLEL 90 (529)
Q Consensus 23 ~mrVLIV-DDd~~v~~~L~~~Le~~gy~V~-~a--~sa~eALe~L~e~~~~pDLVIlDi~MP--d------mdGleLL~~ 90 (529)
|...+|| |-.+.-...+...+++.|..+. .+ .+..+-++.+.+.. .+.|.+=-.++ + .+-.++++.
T Consensus 123 Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~--~gfvY~vS~~GvTG~~~~~~~~~~~~v~~ 200 (267)
T 3vnd_A 123 GVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQG--EGYTYLLSRAGVTGTESKAGEPIENILTQ 200 (267)
T ss_dssp TCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC--CSCEEESCCCCCC--------CHHHHHHH
T ss_pred CCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC--CCcEEEEecCCCCCCccCCcHHHHHHHHH
Confidence 3444444 3333444566667777787744 33 23344555444433 22333311122 1 122456777
Q ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCC
Q 009670 91 VGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKP 126 (529)
Q Consensus 91 Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP 126 (529)
++...++||++=.+-.+.+.+.+++..||+.+++--
T Consensus 201 vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 201 LAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 777678899887777788999889999999998863
No 341
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=25.36 E-value=2.5e+02 Score=25.12 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=43.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY-EVTV-TNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy-~V~~-a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
-+|..||-++...+..+..++..++ .+.. ..+..+.+. .....+|+|++|.-....+-.++++.+
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p~~~~~~~~~l~~l 144 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPPFRRGLLEETINLL 144 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCSSSTTTHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 3899999999999999999887765 4543 355554332 222359999998543333444566554
No 342
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=25.30 E-value=3.1e+02 Score=23.14 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=48.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQY-EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy-~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
.+.+|..+|-++...+..+..++..+. .+. ...+..+ .+.. ..+|+|+++.. .+-.++++.+...+.-.+
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~--~~~D~i~~~~~---~~~~~~l~~~~~~~gG~l 127 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDK--LEFNKAFIGGT---KNIEKIIEILDKKKINHI 127 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGG--CCCSEEEECSC---SCHHHHHHHHHHTTCCEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccC--CCCcEEEECCc---ccHHHHHHHHhhCCCCEE
Confidence 357999999999999999998887665 344 4466655 2322 25999999865 455566665543344344
Q ss_pred EEEe
Q 009670 100 VMLS 103 (529)
Q Consensus 100 IvlT 103 (529)
++.+
T Consensus 128 ~~~~ 131 (183)
T 2yxd_A 128 VANT 131 (183)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 343
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=25.24 E-value=4.3e+02 Score=25.85 Aligned_cols=106 Identities=10% Similarity=0.121 Sum_probs=61.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
..+||.||.--..-.......|.. .+++++ ++....+..+ ... +.+-+.+ |-- +.+. .+++-+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~--~~~~~~~------~~~---~ll~-~~~vD~ 70 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADW--PAIPVVS------DPQ---MLFN-DPSIDL 70 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTC--SSCCEES------CHH---HHHH-CSSCCE
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhC--CCCceEC------CHH---HHhc-CCCCCE
Confidence 358999999876665534444554 477876 4433222222 111 1211111 111 2333 345555
Q ss_pred EEEecC--CCHHHHHHHHhcCCcEeEeCC--CCHHHHHHHHHHHHHh
Q 009670 100 VMLSAY--SDTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa~--~d~e~v~~al~~GA~DYL~KP--~~~eeL~~~l~~vlr~ 142 (529)
|+++.. ...+.+.+|+++|..=|+-|| .+.++..+.+..+.+.
T Consensus 71 V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~ 117 (352)
T 3kux_A 71 IVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDA 117 (352)
T ss_dssp EEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHT
T ss_pred EEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHc
Confidence 555543 345678889999999999999 5677777777665443
No 344
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=25.01 E-value=1.5e+02 Score=28.98 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=60.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-C-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYEVTVT-N-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a-~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||.--..-...+..+.+..+++++.+ . +.+.+.+..+... ..-+.. |--+ .+. .+++-+|
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~~-------~~~~---ll~-~~~~D~V 71 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA--IPVAYG-------SYEE---LCK-DETIDII 71 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT--CCCCBS-------SHHH---HHH-CTTCSEE
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC--CCceeC-------CHHH---Hhc-CCCCCEE
Confidence 4789998876666555555544457777643 3 3333433433321 110111 2222 232 2345555
Q ss_pred EEec--CCCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 101 MLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa--~~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+++. ....+.+..++++|..-|+-||+ +.++..+.++.+.+.
T Consensus 72 ~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~ 117 (330)
T 3e9m_A 72 YIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQ 117 (330)
T ss_dssp EECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHT
T ss_pred EEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 5543 34456678899999999999994 667777766665443
No 345
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=24.83 E-value=4.4e+02 Score=25.76 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
...+.++.+.+. .+|+|.+....| .++++.++.. .++|+... ...+.+..+.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~~--g~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEA--GIRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhc--CCCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 345667776655 489999887665 4677777654 67777543 34567778889999888773
No 346
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=24.68 E-value=1.8e+02 Score=27.69 Aligned_cols=49 Identities=6% Similarity=-0.090 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEecCCCHH
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG-LEMDLPVVMLSAYSDTK 109 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir-~~~~ipVIvlTa~~d~e 109 (529)
...+..+... .||+||+.. .+.....+++.++ ....+|+|...+..+..
T Consensus 180 ~~~~~~l~~~--~~dav~~~~--~~~~a~~~~~~~~~~g~~~p~i~~~g~~~~~ 229 (362)
T 3snr_A 180 AGQALKLVAA--NPDAILVGA--SGTAAALPQTTLRERGYNGLIYQTHGAASMD 229 (362)
T ss_dssp HHHHHHHHHH--CCSEEEEEC--CHHHHHHHHHHHHHTTCCSEEEECGGGCSHH
T ss_pred HHHHHHHHhc--CCCEEEEec--CcchHHHHHHHHHHcCCCccEEeccCcCcHH
Confidence 3344444333 266666532 1222344444332 23345554444444433
No 347
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=24.66 E-value=1.1e+02 Score=33.86 Aligned_cols=97 Identities=4% Similarity=-0.076 Sum_probs=59.0
Q ss_pred HHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhcCCCCcEEEEecCCCHH--
Q 009670 37 KILEKFLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPD-MD-GFKLLELVGLEMDLPVVMLSAYSDTK-- 109 (529)
Q Consensus 37 ~~L~~~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPd-md-GleLL~~Ir~~~~ipVIvlTa~~d~e-- 109 (529)
..+..+|+..||+|... .+ ++..+...+.. +|+|.+-..+.. +. .-++++.++... +..|++.+.....
T Consensus 528 ~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e~~--adiv~lSsl~~~~~~~~~~v~~~Lk~aG-~~~V~vgG~P~~d~~ 603 (637)
T 1req_B 528 GFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKKSG--AQVADLCSSAKVYAQQGLEVAKALKAAG-AKALYLSGAFKEFGD 603 (637)
T ss_dssp HHHHHHHHHTTCBCCEEECCCH-HHHHHHHHHHT--CSEEEEECCHHHHHHHHHHHHHHHHHTT-CSEEEEESCGGGGGG
T ss_pred HHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHhcC--CCEEEEecccHHHHHHHHHHHHHHHhCC-CCeEEEeCCCCccch
Confidence 46677888899998743 33 77777777654 888877554331 11 233555565332 2445677754321
Q ss_pred HHHHHHhcCCcEeEeCCCCHHHHHHHHHH
Q 009670 110 LVMKGINHGACDYLLKPVRMEELKNTWQH 138 (529)
Q Consensus 110 ~v~~al~~GA~DYL~KP~~~eeL~~~l~~ 138 (529)
...+..+ |+++|+.--.+..++...+..
T Consensus 604 ~~~~~~~-G~D~~~~~g~~~~~~l~~l~~ 631 (637)
T 1req_B 604 DAAEAEK-LIDGRLFMGMDVVDTLSSTLD 631 (637)
T ss_dssp GHHHHHH-HCCCEECTTCCHHHHHHHHHH
T ss_pred hhHHHHh-ccceEecCCcCHHHHHHHHHH
Confidence 1334445 999999877877766655543
No 348
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=24.65 E-value=2.1e+02 Score=28.85 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=40.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
-+|+-||-++...+..+.-++..+. .+. ...++.+.+..+......+|+||+|.
T Consensus 241 ~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 4899999999999999998887776 344 55787777665543233699999984
No 349
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=24.36 E-value=3.5e+02 Score=26.80 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=61.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||.--..-...+. .|.. .+++++ ++....+..+..+. +.+-.. .|--+ .+. .+++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~~------~~~~~---ll~-~~~~D~V 69 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ----KGLKIY------ESYEA---VLA-DEKVDAV 69 (359)
T ss_dssp CEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT----TTCCBC------SCHHH---HHH-CTTCCEE
T ss_pred cCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh----cCCcee------CCHHH---Hhc-CCCCCEE
Confidence 378999988766655454 4444 477876 44433333343332 222111 12222 232 3455555
Q ss_pred EEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 101 MLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+++.. ...+.+.+++++|..=|+-||+ +.++..+.+..+.+.
T Consensus 70 ~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (359)
T 3e18_A 70 LIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRV 115 (359)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHh
Confidence 55443 3456788899999999999995 667777777666543
No 350
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=24.35 E-value=3.8e+02 Score=25.65 Aligned_cols=83 Identities=13% Similarity=0.037 Sum_probs=42.7
Q ss_pred cEEEEE-e-CCHHH---HHHHHHHHHhCCCeEEEE------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 24 MRVLAV-D-DDQTC---LKILEKFLRECQYEVTVT------NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 24 mrVLIV-D-Dd~~v---~~~L~~~Le~~gy~V~~a------~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
-||.|| + ++... ...++..+++.|.++... .+....+..+... .||+|++... +.+...+++.++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~~--~~~a~~~~~~~~ 225 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSF--NPDAIYITGY--YPEIALISRQAR 225 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHT--CCSEEEECSC--HHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhc--CCCEEEEccc--hhHHHHHHHHHH
Confidence 366666 3 44332 244556666677775522 2344556655544 3888887432 223444555443
Q ss_pred -cCCCCcEEEEecCCCHHH
Q 009670 93 -LEMDLPVVMLSAYSDTKL 110 (529)
Q Consensus 93 -~~~~ipVIvlTa~~d~e~ 110 (529)
....+|+|...+......
T Consensus 226 ~~g~~~~~~~~~~~~~~~~ 244 (366)
T 3td9_A 226 QLGFTGYILAGDGADAPEL 244 (366)
T ss_dssp HTTCCSEEEECGGGCSTHH
T ss_pred HcCCCceEEeeCCcCCHHH
Confidence 334566654444444333
No 351
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=24.34 E-value=1.4e+02 Score=28.83 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC----CCC-CHHHHHHHHhcC-CCCcEEE-EecCCCHHHHHHHHhcCCcEeEeCCC
Q 009670 55 RAITALKMLRENRNNFDLVISDVYM----PDM-DGFKLLELVGLE-MDLPVVM-LSAYSDTKLVMKGINHGACDYLLKPV 127 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~M----Pdm-dGleLL~~Ir~~-~~ipVIv-lTa~~d~e~v~~al~~GA~DYL~KP~ 127 (529)
+..++++.+.+. ..|.+=+|+.- |.. -|.++++.++.. +++|+.+ +--..-..++..+.++||+.+..-..
T Consensus 41 ~L~~~i~~l~~~--G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAA--GADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHT--TCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHc--CCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 456777777664 36666666632 333 388999887654 4777644 22333345788888999988877665
Q ss_pred CHHHHHHHHHHH
Q 009670 128 RMEELKNTWQHV 139 (529)
Q Consensus 128 ~~eeL~~~l~~v 139 (529)
....+.+.++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 445666666665
No 352
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=24.17 E-value=1.7e+02 Score=27.60 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEC---CH---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCC
Q 009670 34 TCLKILEKFLRECQYEVTVTN---RA---ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYS 106 (529)
Q Consensus 34 ~v~~~L~~~Le~~gy~V~~a~---sa---~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~ 106 (529)
.+...++..+++.||.+..+. +. .+.++.+... .+|-||+--..+.. -+.++.+.. .+|||++....
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~~--~~~~~~l~~--~iPvV~i~~~~ 104 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEG--RVDGVLLQRREDFD--DDMLAAVLE--GVPAVTINSRV 104 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSC--SSSEEEECCCTTCC--HHHHHHHHT--TSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCcEEEEecCCCCc--HHHHHHHhC--CCCEEEECCcC
Confidence 345566677778899977553 22 2344555443 48877774322221 115555554 89999886543
No 353
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=24.16 E-value=75 Score=29.84 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=62.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC----eEE-EECCHHHH--------------HH-HHH---hc--CCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY----EVT-VTNRAITA--------------LK-MLR---EN--RNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy----~V~-~a~sa~eA--------------Le-~L~---e~--~~~pDLVIlDi 77 (529)
+-+|.-||.++...+..+..|++.|+ +|. ...++.++ +. +.. .. ...||+||+|-
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 57899999999999999999999876 444 33443222 22 111 11 13699999997
Q ss_pred CCCCCCHHHHHH-HHh-cCCCCcEEEEe---cCCCHHHHHHHHh----cC-CcEeEeCC--CCHHHHHHHHHHH
Q 009670 78 YMPDMDGFKLLE-LVG-LEMDLPVVMLS---AYSDTKLVMKGIN----HG-ACDYLLKP--VRMEELKNTWQHV 139 (529)
Q Consensus 78 ~MPdmdGleLL~-~Ir-~~~~ipVIvlT---a~~d~e~v~~al~----~G-A~DYL~KP--~~~eeL~~~l~~v 139 (529)
.- +...+. .++ ..+. -+|++- .......+.+.++ .| ..-|-+|| +..+.|...+...
T Consensus 131 ~k----~~~~~~~~l~~l~~G-G~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~~~p~~~~~~~~~~~~~~~ 199 (202)
T 3cvo_A 131 RF----RVGCALATAFSITRP-VTLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQVEPQPIPPGSLMQLIRTM 199 (202)
T ss_dssp SS----HHHHHHHHHHHCSSC-EEEEETTGGGCSSGGGGHHHHCCCEEETTEEEEEECCCCCCGGGHHHHHHHH
T ss_pred CC----chhHHHHHHHhcCCC-eEEEEeCCcCCcchHHHHHHHhHHhhcCceEEEEeCCCCCCHHHHHHHHHHh
Confidence 42 223222 222 2222 244442 2333344444443 11 23355555 6777777776654
No 354
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=23.96 E-value=2.6e+02 Score=28.60 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHH
Q 009670 34 TCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMK 113 (529)
Q Consensus 34 ~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~ 113 (529)
.....|.++-++.|..+.+.--..++++.+.+.. +| ++=+--.++.-+.||+.+.. ...|||+=|+....+.+..
T Consensus 78 e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~~~--v~--~~KI~S~~~~N~pLL~~va~-~gKPviLstGmstl~Ei~~ 152 (350)
T 3g8r_A 78 EQMQKLVAEMKANGFKAICTPFDEESVDLIEAHG--IE--IIKIASCSFTDWPLLERIAR-SDKPVVASTAGARREDIDK 152 (350)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT--CC--EEEECSSSTTCHHHHHHHHT-SCSCEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEeccCCHHHHHHHHHcC--CC--EEEECcccccCHHHHHHHHh-hCCcEEEECCCCCHHHHHH
Confidence 4455666777778998776655566778886642 44 44454557888999998864 4679999999998887777
Q ss_pred HHh
Q 009670 114 GIN 116 (529)
Q Consensus 114 al~ 116 (529)
|++
T Consensus 153 Ave 155 (350)
T 3g8r_A 153 VVS 155 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 355
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=23.69 E-value=1.4e+02 Score=29.77 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=39.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEec
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE---VT-VTNRAITALKMLRENRNNFDLVISDV 77 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~---V~-~a~sa~eALe~L~e~~~~pDLVIlDi 77 (529)
+.+|..||-++...+..+.-++..++. +. ...++.+.+..+......+|+||+|.
T Consensus 175 ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 175 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 348999999999999999888765542 44 44677766654332223599999985
No 356
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=23.63 E-value=1.3e+02 Score=30.82 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=62.2
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHH-------------------hcCCCceEEEEecCC
Q 009670 24 MRVLAVD--DDQTC---LKILEKFLRECQYEVTVTNRAITALKMLR-------------------ENRNNFDLVISDVYM 79 (529)
Q Consensus 24 mrVLIVD--Dd~~v---~~~L~~~Le~~gy~V~~a~sa~eALe~L~-------------------e~~~~pDLVIlDi~M 79 (529)
-+|+||- +++.+ ...+.++|.+.|++|..-....+.+.... +....+|+||+
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~---- 114 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC---- 114 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE----
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE----
Confidence 4688884 34444 34555666677999887655444332221 01124677776
Q ss_pred CCCCHHH--HHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHh
Q 009670 80 PDMDGFK--LLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIRR 142 (529)
Q Consensus 80 PdmdGle--LL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~ 142 (529)
-|.||-= .++.+ ....+||+=+. .|-.+||. +++++++..++.+++++
T Consensus 115 lGGDGT~L~aa~~~-~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g 164 (365)
T 3pfn_A 115 LGGDGTLLYASSLF-QGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEG 164 (365)
T ss_dssp ESSTTHHHHHHHHC-SSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHS
T ss_pred EcChHHHHHHHHHh-ccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcC
Confidence 3678842 22332 23567887664 36667888 78889999999999875
No 357
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=23.59 E-value=3.1e+02 Score=27.21 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=34.7
Q ss_pred CCCcEEEEe--cCCCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 95 MDLPVVMLS--AYSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 95 ~~ipVIvlT--a~~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+++-+|+++ .....+.+.+|+++|..=|+-||+ +.++..+.+..+.+.
T Consensus 82 ~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~ 133 (383)
T 3oqb_A 82 KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSK 133 (383)
T ss_dssp SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 445554443 355677889999999999999996 667777777766443
No 358
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=23.55 E-value=99 Score=30.45 Aligned_cols=111 Identities=8% Similarity=-0.038 Sum_probs=61.0
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH---HHHh--cCCC
Q 009670 23 GMRVLAVDD-DQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLL---ELVG--LEMD 96 (529)
Q Consensus 23 ~mrVLIVDD-d~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL---~~Ir--~~~~ 96 (529)
++||-||.- -..-...+.. |...+.+++.+.+.......+.+. .+..-+.+ +--+++ +.+. ..++
T Consensus 3 mirvgiIG~gG~i~~~h~~~-l~~~~~~lvav~d~~~~~~~~~~~--~~~~~~~~------~~~~ll~~~~~l~~~~~~~ 73 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRA-IKDTGNCLVSAYDINDSVGIIDSI--SPQSEFFT------EFEFFLDHASNLKRDSATA 73 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHH-HHHTTCEEEEEECSSCCCGGGGGT--CTTCEEES------SHHHHHHHHHHHTTSTTTS
T ss_pred ceEEEEECCCcHHHHHHHHH-HHhCCCEEEEEEcCCHHHHHHHhh--CCCCcEEC------CHHHHHHhhhhhhhccCCC
Confidence 478888887 3344444443 344477766443322111112111 12221211 122333 2332 2456
Q ss_pred CcEEEEecC--CCHHHHHHHHhcCCcEeEeCC--CCHHHHHHHHHHHHHh
Q 009670 97 LPVVMLSAY--SDTKLVMKGINHGACDYLLKP--VRMEELKNTWQHVIRR 142 (529)
Q Consensus 97 ipVIvlTa~--~d~e~v~~al~~GA~DYL~KP--~~~eeL~~~l~~vlr~ 142 (529)
+-+|+++.. ...+.+.+|+++|..=|+-|| .+.++..+.+..+.+.
T Consensus 74 vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 74 LDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 666666544 445678899999999999999 5678877777766544
No 359
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=23.31 E-value=1.4e+02 Score=30.22 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=40.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcE-eEeCCCC
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACD-YLLKPVR 128 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~D-YL~KP~~ 128 (529)
+.++|+++++... ++++ .+.--++ -++.++.++....+||+.-=...+.+...++++.|+.| +.+||..
T Consensus 201 ~~~~a~~~~~~l~-~~~i-~iE~P~~---~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~ 270 (379)
T 2rdx_A 201 RVDNAIRLARATR-DLDY-ILEQPCR---SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISN 270 (379)
T ss_dssp CHHHHHHHHHHTT-TSCC-EEECCSS---SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTT
T ss_pred CHHHHHHHHHHHH-hCCe-EEeCCcC---CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccc
Confidence 4466666665543 3455 5543333 34455555555567777554455677788888777555 5667754
No 360
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=23.29 E-value=4.9e+02 Score=25.72 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=60.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||.--..-.......|.. .+++++ ++....+..+ +... .+ -+..|+ -+.+. .+++-+|
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~-~~-~~~~~~----------~~ll~-~~~~D~V 71 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK--RDLP-DV-TVIASP----------EAAVQ-HPDVDLV 71 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH--HHCT-TS-EEESCH----------HHHHT-CTTCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCC-CC-cEECCH----------HHHhc-CCCCCEE
Confidence 48999999876655544555555 377776 4433222222 2211 11 122221 12332 3455565
Q ss_pred EEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 101 MLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+++.. ...+.+.+|+++|..=|+-||+ +.++..+.+..+.+.
T Consensus 72 ~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 117 (364)
T 3e82_A 72 VIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEK 117 (364)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred EEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 55543 3456788899999999999995 677777766665443
No 361
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.29 E-value=3.4e+02 Score=23.71 Aligned_cols=84 Identities=21% Similarity=0.112 Sum_probs=51.3
Q ss_pred EEEEEe--CCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHhcCCCceEEEEecCCCCCC--HHHHHHHHhcCCCCcE
Q 009670 25 RVLAVD--DDQTCLKILEKFLRECQYEVTVTN-RAITALKMLRENRNNFDLVISDVYMPDMD--GFKLLELVGLEMDLPV 99 (529)
Q Consensus 25 rVLIVD--Dd~~v~~~L~~~Le~~gy~V~~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmd--GleLL~~Ir~~~~ipV 99 (529)
||+++. ....+...+...|.+.|..+.... ++.+....+.... +=|++|+ +...+.. -+++++..+ ...++|
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~d~~i~-iS~sG~t~~~~~~~~~ak-~~g~~v 117 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLR-PTDLMIG-VSVWRYLRDTVAALAGAA-ERGVPT 117 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCC-TTEEEEE-ECCSSCCHHHHHHHHHHH-HTTCCE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCC-CCCEEEE-EeCCCCCHHHHHHHHHHH-HCCCCE
Confidence 666664 445566677777888888888776 5555555444332 3466555 5455543 334444444 346899
Q ss_pred EEEecCCCHHHH
Q 009670 100 VMLSAYSDTKLV 111 (529)
Q Consensus 100 IvlTa~~d~e~v 111 (529)
|.+|...+....
T Consensus 118 i~IT~~~~s~l~ 129 (187)
T 3sho_A 118 MALTDSSVSPPA 129 (187)
T ss_dssp EEEESCTTSHHH
T ss_pred EEEeCCCCCcch
Confidence 999987765433
No 362
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=23.08 E-value=1.6e+02 Score=28.02 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=37.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHH
Q 009670 70 FDLVISDVYMPDMDGFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTW 136 (529)
Q Consensus 70 pDLVIlDi~MPdmdGleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l 136 (529)
++++=+.++- -++++.++.++. .++ .+|-.-.-.+.+.+++++++||.-.+. |....++.+..
T Consensus 39 i~~iEvt~~t--~~a~~~I~~l~~~~p~-~~IGAGTVlt~~~a~~ai~AGA~fivs-P~~~~evi~~~ 102 (217)
T 3lab_A 39 VHLLEVTLRT--EAGLAAISAIKKAVPE-AIVGAGTVCTADDFQKAIDAGAQFIVS-PGLTPELIEKA 102 (217)
T ss_dssp CCEEEEETTS--TTHHHHHHHHHHHCTT-SEEEEECCCSHHHHHHHHHHTCSEEEE-SSCCHHHHHHH
T ss_pred CCEEEEeCCC--ccHHHHHHHHHHHCCC-CeEeeccccCHHHHHHHHHcCCCEEEe-CCCcHHHHHHH
Confidence 4444444433 357777776653 344 455555566788999999999965544 64444444433
No 363
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=23.07 E-value=2.3e+02 Score=28.06 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=60.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVV 100 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVI 100 (529)
.+||.||.--..-...+...|.. .+++++ ++....+..+.+.+.-..+. +.. |--+++ . .+++-+|
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~-~~~-------~~~~ll---~-~~~vD~V 72 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIP-VLD-------NVPAML---N-QVPLDAV 72 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCC-EES-------SHHHHH---H-HSCCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCc-ccC-------CHHHHh---c-CCCCCEE
Confidence 37999998887665433334444 467776 44433333333332210111 111 222233 2 2344555
Q ss_pred EEecC--CCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 101 MLSAY--SDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 101 vlTa~--~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
+++.. ...+.+.+++++|..-|+-||+ +.++..+.+..+.+.
T Consensus 73 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~ 118 (359)
T 3m2t_A 73 VMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRS 118 (359)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHc
Confidence 55443 3455678899999999999994 667777777665443
No 364
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=23.06 E-value=2.4e+02 Score=23.95 Aligned_cols=94 Identities=16% Similarity=0.035 Sum_probs=44.1
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-CCCCc
Q 009670 23 GMRVLAVDDD-QTCLKILEKFLRECQYEVTVTNRA--ITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGL-EMDLP 98 (529)
Q Consensus 23 ~mrVLIVDDd-~~v~~~L~~~Le~~gy~V~~a~sa--~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~-~~~ip 98 (529)
+.+|.++|.+ +...+.+...+ ..++.+... ++ .+.++.. .-...|+||+-..-. ..-+.++...+. .+..+
T Consensus 26 g~~V~vid~~~~~~~~~~~~~~-~~~~~~i~g-d~~~~~~l~~a--~i~~ad~vi~~~~~d-~~n~~~~~~a~~~~~~~~ 100 (153)
T 1id1_A 26 GQNVTVISNLPEDDIKQLEQRL-GDNADVIPG-DSNDSSVLKKA--GIDRCRAILALSDND-ADNAFVVLSAKDMSSDVK 100 (153)
T ss_dssp TCCEEEEECCCHHHHHHHHHHH-CTTCEEEES-CTTSHHHHHHH--TTTTCSEEEECSSCH-HHHHHHHHHHHHHTSSSC
T ss_pred CCCEEEEECCChHHHHHHHHhh-cCCCeEEEc-CCCCHHHHHHc--ChhhCCEEEEecCCh-HHHHHHHHHHHHHCCCCE
Confidence 4567777775 33333333332 234554432 22 2233222 112478888755221 112222333333 46677
Q ss_pred EEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 99 VVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 99 VIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
||+.....+. .....++|++..+
T Consensus 101 ii~~~~~~~~--~~~l~~~G~~~vi 123 (153)
T 1id1_A 101 TVLAVSDSKN--LNKIKMVHPDIIL 123 (153)
T ss_dssp EEEECSSGGG--HHHHHTTCCSEEE
T ss_pred EEEEECCHHH--HHHHHHcCCCEEE
Confidence 7776644433 3334568887544
No 365
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=22.93 E-value=3.4e+02 Score=27.58 Aligned_cols=86 Identities=14% Similarity=0.010 Sum_probs=57.3
Q ss_pred HHHHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhc--CCCCcEEEEecCCC
Q 009670 37 KILEKFLRECQYEV--TVTNRAITALKMLRENRNNFDLVISDVYMP-----DMDGFKLLELVGL--EMDLPVVMLSAYSD 107 (529)
Q Consensus 37 ~~L~~~Le~~gy~V--~~a~sa~eALe~L~e~~~~pDLVIlDi~MP-----dmdGleLL~~Ir~--~~~ipVIvlTa~~d 107 (529)
+.++.+-+..+..| ..+.+.++|..+.+. .+|.|++.-+-- +...++++..+.. ...+|||.-.+-.+
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~ 283 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRT 283 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCS
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 34444444444443 356788888777653 488888743211 1234677665532 23699999999999
Q ss_pred HHHHHHHHhcCCcEeEeC
Q 009670 108 TKLVMKGINHGACDYLLK 125 (529)
Q Consensus 108 ~e~v~~al~~GA~DYL~K 125 (529)
...+.+++.+||+...+-
T Consensus 284 g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 284 GTDVLKALALGARCIFLG 301 (352)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999987553
No 366
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=22.89 E-value=2.4e+02 Score=23.95 Aligned_cols=56 Identities=7% Similarity=0.005 Sum_probs=38.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQYE--VTVTNRAITALKMLRENRNNFDLVISDVYMPD 81 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy~--V~~a~sa~eALe~L~e~~~~pDLVIlDi~MPd 81 (529)
+.+|..+|-++...+..+..++..++. +....+..+ .+......+|+|++...+..
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~D~i~~~~~~~~ 106 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR---AFDDVPDNPDVIFIGGGLTA 106 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG---GGGGCCSCCSEEEECC-TTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh---hhhccCCCCCEEEECCcccH
Confidence 578999999999999999888876653 544444433 22322135999999876665
No 367
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=22.89 E-value=2.1e+02 Score=27.30 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009670 35 CLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~~a~---sa~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~ 105 (529)
....+++.+++.||++..+. +.. +.++.+... .+|.||+-- ... .-.+.+..+..+++|+|++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~--~vdgIi~~~--~~~-~~~~~~~~~~~p~~p~v~id~~ 96 (296)
T 2hqb_A 25 AYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDG--GVNLIFGHG--HAF-AEYFSTIHNQYPDVHFVSFNGE 96 (296)
T ss_dssp HHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHT--TCCEEEECS--THH-HHHHHTTTTSCTTSEEEEESCC
T ss_pred HHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHC--CCCEEEEcC--HhH-HHHHHHHHHHCCCCEEEEEecC
Confidence 45667777888899987653 222 244545443 499988721 111 1112222234578999988654
No 368
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=22.87 E-value=3.2e+02 Score=24.48 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhcC-CCceEEEEecCCCCCCHHHHHHHHhcC-C-CCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHH
Q 009670 54 NRAITALKMLRENR-NNFDLVISDVYMPDMDGFKLLELVGLE-M-DLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRME 130 (529)
Q Consensus 54 ~sa~eALe~L~e~~-~~pDLVIlDi~MPdmdGleLL~~Ir~~-~-~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~e 130 (529)
.+.+++.+.++... ..+++|-+.+..| ++.+.++.++.. + +. +|-+....+.+.+..+.+.||+.. .-|.-..
T Consensus 19 ~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~ 94 (205)
T 1wa3_A 19 NSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPHLDE 94 (205)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSSCCH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcCCCEE-EcCCCCH
Confidence 45555555544321 2477776555544 567777766543 2 33 343433456778899999999766 6675444
Q ss_pred HHHHHHH
Q 009670 131 ELKNTWQ 137 (529)
Q Consensus 131 eL~~~l~ 137 (529)
++.+..+
T Consensus 95 ~~~~~~~ 101 (205)
T 1wa3_A 95 EISQFCK 101 (205)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 369
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=22.76 E-value=1.6e+02 Score=28.45 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=39.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLREC-----QYEVT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~-----gy~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP 80 (529)
...+|..||=++.+.+..++.+... .-++. ...++.+.+.. ....+|+||+|...|
T Consensus 101 ~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~ 162 (283)
T 2i7c_A 101 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---VTNTYDVIIVDSSDP 162 (283)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH---CCSCEEEEEEECCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh---CCCCceEEEEcCCCC
Confidence 3579999999999999999887542 12343 45676665433 234699999998655
No 370
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=22.70 E-value=4.4e+02 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeE
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYL 123 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL 123 (529)
+++++.++...++|||..-+..+.+.+.++++.|..|.+
T Consensus 266 ~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 266 VPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEE
Confidence 567777776668999988888889999999999955543
No 371
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=22.67 E-value=4.2e+02 Score=30.01 Aligned_cols=108 Identities=12% Similarity=0.223 Sum_probs=69.3
Q ss_pred cEEEEEeCCH----------HHHHHHHHHHHhCCC--eEEEEC---CH---HHHHHHHHhcCCCceEEEEecCCCCCCHH
Q 009670 24 MRVLAVDDDQ----------TCLKILEKFLRECQY--EVTVTN---RA---ITALKMLRENRNNFDLVISDVYMPDMDGF 85 (529)
Q Consensus 24 mrVLIVDDd~----------~v~~~L~~~Le~~gy--~V~~a~---sa---~eALe~L~e~~~~pDLVIlDi~MPdmdGl 85 (529)
++++||.+.+ .....++.+.++.+. .|.... +. .+...++... .|++++--.. +.-|+
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~a---aDvfV~PS~~-Egfgl 679 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDT---KGAFVQPALY-EAFGL 679 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHT---TCEEEECCSC-BSSCH
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhc---CeEEEECCCc-cCccH
Confidence 5778887766 255666666666654 344443 22 4444555432 4777764332 34567
Q ss_pred HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 86 KLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 86 eLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
.+++.+. ..+|||. |.... ..+.+..|.++++..|-+.++|..++..++.
T Consensus 680 vllEAMA--~G~PVIa-sd~GG---~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~ 729 (816)
T 3s28_A 680 TVVEAMT--CGLPTFA-TCKGG---PAEIIVHGKSGFHIDPYHGDQAADTLADFFT 729 (816)
T ss_dssp HHHHHHH--TTCCEEE-ESSBT---HHHHCCBTTTBEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCEEE-eCCCC---hHHHHccCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7777654 3578886 33333 4555678899999999999999999988764
No 372
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=22.65 E-value=3.5e+02 Score=27.43 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 57 ITALKMLRENRNNFDLVISDVYMPDMDG-FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 57 ~eALe~L~e~~~~pDLVIlDi~MPdmdG-leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+.++.+.+. .+|+|.+|..-.+... ++.++.++...++|||+= .-...+.+..+.++||+...+
T Consensus 107 ~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg-~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEc-cCCCHHHHHHHHHcCcCEEEE
Confidence 4444444443 4899998875433222 456666654447888762 234567888899999987765
No 373
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=22.52 E-value=2.4e+02 Score=28.99 Aligned_cols=108 Identities=9% Similarity=0.108 Sum_probs=59.1
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCce-EEEEecCCCCCCHHHHHHHHhcCC
Q 009670 23 GMRVLAVDD----DQTCLKILEKFLRE-CQYEVT-VTNRAITALKMLRENRNNFD-LVISDVYMPDMDGFKLLELVGLEM 95 (529)
Q Consensus 23 ~mrVLIVDD----d~~v~~~L~~~Le~-~gy~V~-~a~sa~eALe~L~e~~~~pD-LVIlDi~MPdmdGleLL~~Ir~~~ 95 (529)
.+||.||-- -..-...+..+.+. .+++++ ++....+..+.+.+.-..++ -+..| +-+.+. .+
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~----------~~~ll~-~~ 88 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPT----------LESFAS-SS 88 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESS----------HHHHHH-CS
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCC----------HHHHhc-CC
Confidence 489999986 33223334444443 477865 45433343333333211111 12222 112333 34
Q ss_pred CCcEEEEecCC--CHHHHHHHHhcC------CcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 96 DLPVVMLSAYS--DTKLVMKGINHG------ACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 96 ~ipVIvlTa~~--d~e~v~~al~~G------A~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
++-+|+++... ..+.+..|+++| ..=|+-||+ +.++..+.++.+.+
T Consensus 89 ~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~ 144 (438)
T 3btv_A 89 TIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAE 144 (438)
T ss_dssp SCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHH
Confidence 55666665433 456788899999 888999995 57777666665543
No 374
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=22.46 E-value=63 Score=31.53 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=54.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHH--------HHHHHhcCCCceEEEEe---cC----------C
Q 009670 21 PIGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITA--------LKMLRENRNNFDLVISD---VY----------M 79 (529)
Q Consensus 21 p~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eA--------Le~L~e~~~~pDLVIlD---i~----------M 79 (529)
..+|+|++++.+......++ .|.+.|++|....-..+. .+.+.+.-.+.|+||+- .. -
T Consensus 5 ~~~mki~v~~~~~~~~~~~~-~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~ 83 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIR-KLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN 83 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHH-HHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred ccCCEEEEECCCHHHHHHHH-HHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence 45789999998877666654 456678998765311111 00011111147888861 10 0
Q ss_pred CC--CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 80 PD--MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 80 Pd--mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.. .+ - +.+...+...+|+ ++....+....+.+.|+.-+-.
T Consensus 84 ~~~~~~-~---~~l~~~~~l~~i~-~g~~~~d~~~~~~~~gi~v~~~ 125 (300)
T 2rir_A 84 EEVVLK-Q---DHLDRTPAHCVIF-SGISNAYLENIAAQAKRKLVKL 125 (300)
T ss_dssp SCEECC-H---HHHHTSCTTCEEE-ESSCCHHHHHHHHHTTCCEEEG
T ss_pred CCccch-H---HHHhhcCCCCEEE-EecCCHHHHHHHHHCCCEEEee
Confidence 11 12 1 2333445566666 8887766577888888765433
No 375
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=22.40 E-value=2e+02 Score=28.93 Aligned_cols=42 Identities=10% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHH
Q 009670 95 MDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRMEELKNTWQHVIR 141 (529)
Q Consensus 95 ~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr 141 (529)
..+|+|++-...+. .+.++.|+. +++.+ +.++|..++..++.
T Consensus 325 ~G~PvV~~~~~~~~---~e~v~~G~~-~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 325 LGKPVLVMRETTER---PEAVAAGTV-KLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp GTCCEEECCSSCSC---HHHHHHTSE-EECTT-CHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCcc---hHHHHcCce-EEcCC-CHHHHHHHHHHHHc
Confidence 46799875333333 245677864 66654 78999999988875
No 376
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=22.38 E-value=1.5e+02 Score=27.20 Aligned_cols=64 Identities=14% Similarity=0.358 Sum_probs=44.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHH-HHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALK-MLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe-~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
+.+|..||-++......+..++..++ .+. ...++.+.+. .+ ...+|+|++|...+. -.++++.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~~~--~~~~l~~~ 162 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFIDAAKAQ--SKKFFEIY 162 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEEETTSSS--HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEEcCcHHH--HHHHHHHH
Confidence 57999999999999999999988775 344 4566655544 33 235999999975433 33455544
No 377
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.29 E-value=3.8e+02 Score=23.25 Aligned_cols=40 Identities=13% Similarity=-0.174 Sum_probs=22.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHH
Q 009670 23 GMRVLAVDDDQTCLKILEKFLREC-QYEVTVTNRAITALKML 63 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~-gy~V~~a~sa~eALe~L 63 (529)
+.+|+|+.--. +-..+...|.+. |++|+.+..-.+..+.+
T Consensus 39 ~~~v~IiG~G~-~G~~~a~~L~~~~g~~V~vid~~~~~~~~~ 79 (183)
T 3c85_A 39 HAQVLILGMGR-IGTGAYDELRARYGKISLGIEIREEAAQQH 79 (183)
T ss_dssp TCSEEEECCSH-HHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred CCcEEEECCCH-HHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence 56788887544 444445556566 77777654333333333
No 378
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=22.28 E-value=2.4e+02 Score=22.93 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=34.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHh
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVT--VTNRAITALKMLRE 65 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~--~a~sa~eALe~L~e 65 (529)
.+++|||+-.+..-+...+.+-.+..++|. .+.+..+|.+++.+
T Consensus 50 qnikvlilvsndeeldkakelaqkmeidvrtrkvtspdeakrwike 95 (110)
T 2kpo_A 50 QNIKVLILVSNDEELDKAKELAQKMEIDVRTRKVTSPDEAKRWIKE 95 (110)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHH
T ss_pred cCeEEEEEEcChHHHHHHHHHHHhhceeeeeeecCChHHHHHHHHH
Confidence 479999988887777777777777666665 56899999998876
No 379
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=22.24 E-value=2.5e+02 Score=27.61 Aligned_cols=33 Identities=27% Similarity=0.153 Sum_probs=20.9
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhCCCeEEEECC
Q 009670 23 GMRVLAVDDDQ----TCLKILEKFLRECQYEVTVTNR 55 (529)
Q Consensus 23 ~mrVLIVDDd~----~v~~~L~~~Le~~gy~V~~a~s 55 (529)
.||||++-... .-...|...|.+.|++|..+..
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 38999996431 1123455667778999886643
No 380
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=22.17 E-value=61 Score=30.72 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=48.0
Q ss_pred HHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCC-------CHHHHHHHHhcC-----CCCcEEEEecCC
Q 009670 42 FLRECQYEVTVT---NRAITALKMLRENRNNFDLVISDVYMPDM-------DGFKLLELVGLE-----MDLPVVMLSAYS 106 (529)
Q Consensus 42 ~Le~~gy~V~~a---~sa~eALe~L~e~~~~pDLVIlDi~MPdm-------dGleLL~~Ir~~-----~~ipVIvlTa~~ 106 (529)
.+++.|..+..+ .+..++++.+.. ..|.|++=-..|+. .+++.++.++.. .++||.+.-+-.
T Consensus 107 ~i~~~g~~~gv~~~p~t~~e~~~~~~~---~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~ 183 (230)
T 1tqj_A 107 QIRELGKKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 183 (230)
T ss_dssp HHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCC
T ss_pred HHHHcCCcEEEEEeCCCcHHHHHHHHh---cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcC
Confidence 334556665533 344455544332 37877776666752 245656555432 268887776655
Q ss_pred CHHHHHHHHhcCCcEeEeC
Q 009670 107 DTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 107 d~e~v~~al~~GA~DYL~K 125 (529)
. +.+.++.++||+.++.=
T Consensus 184 ~-~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 184 P-NNTWQVLEAGANAIVAG 201 (230)
T ss_dssp T-TTTHHHHHHTCCEEEES
T ss_pred H-HHHHHHHHcCCCEEEEC
Confidence 4 77888899999998764
No 381
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=21.97 E-value=2.6e+02 Score=24.86 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=61.2
Q ss_pred CccEEEEEeCCH-----H-HHHHHHHHHHhCCCeEEEE--C-------------C----HHHHHHHHHhcCCCceEEEEe
Q 009670 22 IGMRVLAVDDDQ-----T-CLKILEKFLRECQYEVTVT--N-------------R----AITALKMLRENRNNFDLVISD 76 (529)
Q Consensus 22 ~~mrVLIVDDd~-----~-v~~~L~~~Le~~gy~V~~a--~-------------s----a~eALe~L~e~~~~pDLVIlD 76 (529)
..+||.|.-.-. . ..+.++..|++.| .|... . + ...-+++++ ..|+||.+
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~----~aD~vva~ 84 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQ----QADVVVAE 84 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHH----HCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHH----hCCEEEEE
Confidence 457899884222 1 3567788888777 66310 0 1 122234444 37899998
Q ss_pred cCCCC-CCHHHHHHHHhcCCCCcEEEEecCCCHH---HHHHHHhcCCcEeEeCCCCHHHHHHHHHHHHHhc
Q 009670 77 VYMPD-MDGFKLLELVGLEMDLPVVMLSAYSDTK---LVMKGINHGACDYLLKPVRMEELKNTWQHVIRRK 143 (529)
Q Consensus 77 i~MPd-mdGleLL~~Ir~~~~ipVIvlTa~~d~e---~v~~al~~GA~DYL~KP~~~eeL~~~l~~vlr~~ 143 (529)
+.-++ ..++|+--. .....|||++....... ....+...+ ..+-.+.++.++|...+...++..
T Consensus 85 ~~~~d~Gt~~EiGyA--~algKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~~ 152 (165)
T 2khz_A 85 VTQPSLGVGYELGRA--VALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEAY 152 (165)
T ss_dssp CSSCCHHHHHHHHHH--HHTCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHH--HHCCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHhc
Confidence 76222 123333222 23467999987554211 111222111 223344458889999998888753
No 382
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.93 E-value=1.6e+02 Score=31.37 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=40.4
Q ss_pred CceEEEEecCCCCCC-HHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 69 NFDLVISDVYMPDMD-GFKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 69 ~pDLVIlDi~MPdmd-GleLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
.+|+|.+|...+... -+++++.++. .+++|||+ ..-...+.+..+.++||+...+
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 499999999877543 3467776654 46888887 3345667888899999988875
No 383
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=21.79 E-value=1.1e+02 Score=29.59 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=38.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CCC---eEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRE--CQY---EVT-VTNRAITALKMLRENRNNFDLVISDVYMP 80 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~--~gy---~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MP 80 (529)
...+|..||=++.+.+..++.+.. .++ ++. ...++.+.+ ......+|+||+|..-|
T Consensus 98 ~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l---~~~~~~fD~Ii~d~~~~ 159 (275)
T 1iy9_A 98 SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI---AKSENQYDVIMVDSTEP 159 (275)
T ss_dssp TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH---HTCCSCEEEEEESCSSC
T ss_pred CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH---hhCCCCeeEEEECCCCC
Confidence 347999999999999999988743 122 344 446665544 33334699999998654
No 384
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=21.56 E-value=53 Score=31.27 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=30.8
Q ss_pred CceEEEEec-CCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeCCCCH-HHHHH
Q 009670 69 NFDLVISDV-YMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLKPVRM-EELKN 134 (529)
Q Consensus 69 ~pDLVIlDi-~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~KP~~~-eeL~~ 134 (529)
.+|+|++|= ..-+.+-+++++.+.. .+++||+ ++.. .||..+||.. .+|..
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~-~~~~Vi~-~Gl~-------------~DF~~~~F~~~~~Ll~ 153 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLAN-RGYRVIV-AGLD-------------QDFRGLPFGQVPQLMA 153 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHH-TTCEEEE-EECS-------------BCTTSCBCTTHHHHHH
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhh-CCCEEEE-Eecc-------------cccccCccccHHHHHH
Confidence 489999994 3333456677776643 3777664 5543 2477777754 33443
No 385
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=21.50 E-value=2.2e+02 Score=29.09 Aligned_cols=64 Identities=14% Similarity=-0.093 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhcCCcEeEe
Q 009670 58 TALKMLRENRNNFDLVISDVYMPDMDG-FKLLELVGL-EMDLPVVMLSAYSDTKLVMKGINHGACDYLL 124 (529)
Q Consensus 58 eALe~L~e~~~~pDLVIlDi~MPdmdG-leLL~~Ir~-~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~ 124 (529)
+.++.+.+. .+|+|.+|........ .+.+++++. .+++|||+= .-...+.+..++++||+...+
T Consensus 103 e~~~~a~~a--GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 103 QRAEALRDA--GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHT--TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHc--CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 344444443 4899999976533222 456777764 357888761 134567888999999988775
No 386
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=21.39 E-value=2.4e+02 Score=28.75 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 009670 24 MRVLAVDDDQTC-----LKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 24 mrVLIVDDd~~v-----~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~ 89 (529)
-|+|||-|+..+ .+.+...|++.|+++..+. ...++++.+++.. +|+||- .-+..-+++.+
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEK--VEAVLG---VGGGSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTT--CSEEEE---EESHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcC--CCEEEE---eCChhHHHHHH
Confidence 589999875433 4456667777788776553 2355666666554 888773 24545566666
Q ss_pred HH
Q 009670 90 LV 91 (529)
Q Consensus 90 ~I 91 (529)
.+
T Consensus 119 ~i 120 (407)
T 1vlj_A 119 AV 120 (407)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 387
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=21.33 E-value=43 Score=27.11 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCchhhhhhhhh
Q 009670 221 ILDLMNVEGLTRENVASHLQKFRLSLKRLGNKTLEAGMVASVGSKDSSYLRIGALD 276 (529)
Q Consensus 221 IL~~mk~~~LT~eEvAshLqkyr~~Lk~~~~~~~~~~g~~~l~~sd~~~l~~aa~i 276 (529)
|+.++ ..++|..|||..|+....+++.+-....++.+... ...+..++...
T Consensus 35 vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~----~~~l~~~a~~~ 85 (95)
T 3c57_A 35 LLGLL-SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMER----RTQAAVFATEL 85 (95)
T ss_dssp HHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC----CCC--------
T ss_pred HHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHc
Confidence 44444 67899999999998666656665554444444433 33455555433
No 388
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.31 E-value=2.3e+02 Score=26.49 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCeEEEEC-----CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009670 35 CLKILEKFLRECQYEVTVTN-----RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 35 v~~~L~~~Le~~gy~V~~a~-----sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~ 105 (529)
+...++..+++.||.+..+. ...+.++.+.... +|-||+--..... +.++.+.. ..+|||++...
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~~~---~~~~~l~~-~~iPvV~~~~~ 97 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRR--VDALIVAHTQPED---FRLQYLQK-QNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTC--CSEEEECSCCSSC---HHHHHHHH-TTCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCC--CCEEEEeCCCCCh---HHHHHHHh-CCCCEEEECCC
Confidence 34455666677899877542 2245566666543 8877764332222 45554432 46899988654
No 389
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=21.13 E-value=3.4e+02 Score=24.89 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEC---CHH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009670 34 TCLKILEKFLRECQYEVTVTN---RAI---TALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 34 ~v~~~L~~~Le~~gy~V~~a~---sa~---eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~ 105 (529)
.+...++..+++.||++.... +.. +.++.+... .+|-||+--... +. +.++.+.....+|||++...
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~~--~~-~~~~~l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPRFL--SV-DEIDDIIDAHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHT--TCSEEEEECSSS--CH-HHHHHHHHTCSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhc--CCCEEEEecCCC--Ch-HHHHHHHhcCCCCEEEEccc
Confidence 345566777778899987664 232 234444433 488777643222 22 34454433257899888644
No 390
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=21.10 E-value=1.7e+02 Score=28.43 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=55.3
Q ss_pred ccEEEEEeCCHHHHH-HHHHHHHhCCCeEE-EECCHHH-HHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDDQTCLK-ILEKFLRECQYEVT-VTNRAIT-ALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~-~L~~~Le~~gy~V~-~a~sa~e-ALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
.+||.||.--..-.. .+..+.+..+++++ .+....+ +.+..+... +. + -+.++.+ . .++-+
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g--~~--~-------~~~~~~l---~--~~~D~ 68 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR--IP--Y-------ADSLSSL---A--ASCDA 68 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT--CC--B-------CSSHHHH---H--TTCSE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CC--c-------cCcHHHh---h--cCCCE
Confidence 378888887655444 33333333467766 4432222 222222211 11 1 1122222 2 34556
Q ss_pred EEEecCCC--HHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHH
Q 009670 100 VMLSAYSD--TKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIR 141 (529)
Q Consensus 100 IvlTa~~d--~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr 141 (529)
|+++.... .+.+..+++.|..-++-||+ +.++....++.+.+
T Consensus 69 V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 69 VFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp EEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 66655444 45677899999988999995 56776666555443
No 391
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=21.09 E-value=2.4e+02 Score=27.45 Aligned_cols=95 Identities=9% Similarity=0.080 Sum_probs=62.5
Q ss_pred HHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCC---CCC--HHHHHHHH-h--cCCCCcEEEEecCCCHHH
Q 009670 41 KFLRECQYEVT--VTNRAITALKMLRENRNNFDLVISDVYMP---DMD--GFKLLELV-G--LEMDLPVVMLSAYSDTKL 110 (529)
Q Consensus 41 ~~Le~~gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~MP---dmd--GleLL~~I-r--~~~~ipVIvlTa~~d~e~ 110 (529)
..|+..|+.+. -+..+...+..|...+ +|.|=+|-.+- ..+ ...+++.+ . ...++.| +..+-.+.+.
T Consensus 170 ~~Lr~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~v-vAEGVEt~~q 246 (294)
T 2r6o_A 170 DALRARGVRLALDDFGTGYSSLSYLSQLP--FHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEV-VAEGIETAQQ 246 (294)
T ss_dssp HHHHHHTCEEEEEEETSSCBCHHHHHHSC--CCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEE-EECCCCSHHH
T ss_pred HHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEE-EEecCCcHHH
Confidence 34566788866 4566666777777765 89999984321 122 33445422 2 2344444 4677778888
Q ss_pred HHHHHhcCCcE----eEeCCCCHHHHHHHHHH
Q 009670 111 VMKGINHGACD----YLLKPVRMEELKNTWQH 138 (529)
Q Consensus 111 v~~al~~GA~D----YL~KP~~~eeL~~~l~~ 138 (529)
...+.+.|++. |+.||...+++...+.+
T Consensus 247 ~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 247 YAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp HHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 88888999874 58999999998776654
No 392
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=21.04 E-value=1.8e+02 Score=27.08 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=37.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEecC
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQYEVTVTN-------RAITALKMLRENRNNFDLVISDVY 78 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~-------sa~eALe~L~e~~~~pDLVIlDi~ 78 (529)
|+|||..-.-.+-..+...|.+.|++|+... +.+...+.++.. .+|+||--..
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~--~~d~vi~~a~ 65 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEI--RPHIIIHCAA 65 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHH--CCSEEEECCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhc--CCCEEEECCc
Confidence 5899999988888888888877799988653 344444455443 3899886443
No 393
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=20.98 E-value=1.7e+02 Score=29.58 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=40.4
Q ss_pred cEEEEEeCCHH------HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH
Q 009670 24 MRVLAVDDDQT------CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLL 88 (529)
Q Consensus 24 mrVLIVDDd~~------v~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL 88 (529)
-|||||-|... ..+.+...|++.|+++..+. ...++++.+++.. +|+||- .-+..-+++.
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~IIa---vGGGsv~D~a 108 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQ--CDIIVT---VGGGSPHDCG 108 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTT--CCEEEE---EESHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCcchhhHH
Confidence 58999988743 45667777877788765543 2356666666654 888773 2444556666
Q ss_pred HHH
Q 009670 89 ELV 91 (529)
Q Consensus 89 ~~I 91 (529)
+.+
T Consensus 109 K~i 111 (387)
T 3bfj_A 109 KGI 111 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 394
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.93 E-value=4e+02 Score=22.87 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHh
Q 009670 128 RMEELKNTWQHVIRR 142 (529)
Q Consensus 128 ~~eeL~~~l~~vlr~ 142 (529)
+.++|...+++.+++
T Consensus 137 dkeelieqvrrfvrk 151 (162)
T 2l82_A 137 DKEELIEQVRRFVRK 151 (162)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 345555555555543
No 395
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=20.93 E-value=1.2e+02 Score=29.38 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=34.2
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 69 NFDLVISDVYMPDMDG-------FKLLELVGL-----EMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 69 ~pDLVIlDi~MPdmdG-------leLL~~Ir~-----~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
.+|+|++=-..|+..| ++-++.++. ..+++ |.+.+--+.+.+.++.++||+-++.=
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCE-EEEESSCCTTTHHHHHTTTCCEEEES
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCee-EEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 3677766455676655 333443332 23444 44666666788999999999998663
No 396
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=20.92 E-value=5e+02 Score=24.74 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=60.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRE-CQYEVT-VTN-RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPV 99 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~-~gy~V~-~a~-sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipV 99 (529)
.+||.||.--..-...+...|.+ .+++++ .+. +.+.+.+..++.. ... . .|--++ +. ++-+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~--~~~-~-------~~~~~l---l~---~~D~ 69 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR--IMP-F-------DSIESL---AK---KCDC 69 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT--CCB-C-------SCHHHH---HT---TCSE
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCC-c-------CCHHHH---Hh---cCCE
Confidence 37899998877666534444544 577877 444 3433444333322 111 1 122223 33 3445
Q ss_pred EEEec--CCCHHHHHHHHhcCCcEeEeCCC--CHHHHHHHHHHHHHh
Q 009670 100 VMLSA--YSDTKLVMKGINHGACDYLLKPV--RMEELKNTWQHVIRR 142 (529)
Q Consensus 100 IvlTa--~~d~e~v~~al~~GA~DYL~KP~--~~eeL~~~l~~vlr~ 142 (529)
|+++. ....+.+..++++|..=++-||+ +.++..+.+..+.+.
T Consensus 70 V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 70 IFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred EEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 55543 34456678899999999999995 677777777666543
No 397
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=20.89 E-value=1e+02 Score=27.69 Aligned_cols=67 Identities=19% Similarity=0.365 Sum_probs=45.2
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 009670 19 KFPIGMRVLAVDDDQTCLKILEKFLRECQY--EVT-VTNRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELV 91 (529)
Q Consensus 19 ~~p~~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~-~a~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~I 91 (529)
.+|.+.+|..||-++...+..++.++..++ .+. ...++.+.+. .... +|+|++|... .+-..+++.+
T Consensus 77 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~-fD~v~~~~~~--~~~~~~l~~~ 146 (210)
T 3c3p_A 77 AISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA---GQRD-IDILFMDCDV--FNGADVLERM 146 (210)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT---TCCS-EEEEEEETTT--SCHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc---cCCC-CCEEEEcCCh--hhhHHHHHHH
Confidence 345467999999999999999998877665 244 4466655432 2234 9999999543 3445556544
No 398
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=20.88 E-value=1.3e+02 Score=29.58 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCCcEE--EEecCCCHHHHHHHHhcCCcEeEeCC-----CCHHHHHHHHHHHHH
Q 009670 84 GFKLLELVGLEMDLPVV--MLSAYSDTKLVMKGINHGACDYLLKP-----VRMEELKNTWQHVIR 141 (529)
Q Consensus 84 GleLL~~Ir~~~~ipVI--vlTa~~d~e~v~~al~~GA~DYL~KP-----~~~eeL~~~l~~vlr 141 (529)
++++++.++....+||| ...+-.+.+.+.+++..||+.+++-- -++.+....+...+.
T Consensus 195 ~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~~ 259 (305)
T 2nv1_A 195 PYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATT 259 (305)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHHH
Confidence 45677766555678987 55666688899999999999876543 244444444444443
No 399
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=20.88 E-value=30 Score=32.97 Aligned_cols=80 Identities=10% Similarity=0.078 Sum_probs=42.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc--CCCceEEEEecC-CCCCCHHHHHHHHhcCCCC
Q 009670 23 GMRVLAVDDDQTCLKILEKFLRECQY--EVTVTNRAITALKMLREN--RNNFDLVISDVY-MPDMDGFKLLELVGLEMDL 97 (529)
Q Consensus 23 ~mrVLIVDDd~~v~~~L~~~Le~~gy--~V~~a~sa~eALe~L~e~--~~~pDLVIlDi~-MPdmdGleLL~~Ir~~~~i 97 (529)
+++|+++-.....+ ....++.+.|. .........+.++.+++. ...+|+|++|=. .-..+-+++++.+.. ..+
T Consensus 40 g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~gi 117 (223)
T 2b8t_A 40 DVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAE-NGF 117 (223)
T ss_dssp TCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH-TTC
T ss_pred CCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh-CCC
Confidence 57888883222222 22223334443 233346667777777652 124899999942 222345566666543 367
Q ss_pred cEEEEecC
Q 009670 98 PVVMLSAY 105 (529)
Q Consensus 98 pVIvlTa~ 105 (529)
+||+ ++.
T Consensus 118 ~Vil-~Gl 124 (223)
T 2b8t_A 118 VVII-SGL 124 (223)
T ss_dssp EEEE-ECC
T ss_pred eEEE-Eec
Confidence 7765 444
No 400
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=20.87 E-value=1.1e+02 Score=32.03 Aligned_cols=83 Identities=14% Similarity=0.200 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC---CCHHHHHHHHhcCCcEe-EeCCCC--
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY---SDTKLVMKGINHGACDY-LLKPVR-- 128 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~---~d~e~v~~al~~GA~DY-L~KP~~-- 128 (529)
+..+|++++++.-++++++.+.==++..| ++-.+.++.....||-++... .+.....++++.|++|+ .+|+-.
T Consensus 264 t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iG 342 (428)
T 3tqp_A 264 TSEEMIDRLTEWTKKYPVISIEDGLSEND-WAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIG 342 (428)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CHHHHHHHHHHHHhhcccceEeCCCCccc-HHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEecccccC
Confidence 56888887765212477888765555433 233333332223455433332 26778889999888765 566633
Q ss_pred -HHHHHHHHHH
Q 009670 129 -MEELKNTWQH 138 (529)
Q Consensus 129 -~eeL~~~l~~ 138 (529)
+.+..+++..
T Consensus 343 GiTealkia~l 353 (428)
T 3tqp_A 343 TLTETLATVGL 353 (428)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 3444444443
No 401
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=20.62 E-value=1e+02 Score=29.87 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCC-C--HHHHHHHHhcCC----CCcEEEEecCCCHHHHHHHHhc--CCcEeEe----
Q 009670 58 TALKMLRENRNNFDLVISDVYMPDM-D--GFKLLELVGLEM----DLPVVMLSAYSDTKLVMKGINH--GACDYLL---- 124 (529)
Q Consensus 58 eALe~L~e~~~~pDLVIlDi~MPdm-d--GleLL~~Ir~~~----~ipVIvlTa~~d~e~v~~al~~--GA~DYL~---- 124 (529)
+.++.+++. --.+++.|+.-.++ . -+++++.+.... .+|||.--+-.+.+.+.++++. |+++.+.
T Consensus 162 e~a~~~~~~--a~~il~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 162 DTFRELRKY--TNEFLIHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp HHHHHHTTT--CSEEEEEC-------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred HHHHHHHHh--cCEEEEEeeccccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 444554432 23577778754332 2 367888776554 8999998888999999999987 8888533
Q ss_pred ----CC-CCHHHHHHHHH
Q 009670 125 ----KP-VRMEELKNTWQ 137 (529)
Q Consensus 125 ----KP-~~~eeL~~~l~ 137 (529)
.| +.+.++.+.++
T Consensus 240 ~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 240 DIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp GGGTCSSBCHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 34 77777766543
No 402
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.54 E-value=2e+02 Score=23.35 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhc
Q 009670 25 RVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLREN 66 (529)
Q Consensus 25 rVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~ 66 (529)
-|||+..|....+..+.+-++.+.++.++....+...++++.
T Consensus 4 yvliisndkklieearkmaekanlelrtvktedelkkyleef 45 (110)
T 2kpo_A 4 YVLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYLEEF 45 (110)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHhcCceeeeeccHHHHHHHHHHH
Confidence 589999999999999999988889999999888888877764
No 403
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=20.54 E-value=7.9e+02 Score=26.65 Aligned_cols=100 Identities=11% Similarity=0.163 Sum_probs=65.2
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CCC
Q 009670 23 GMRVLAVDDD----QTCLKILEKFLREC-QYEVT--VTNRAITALKMLRENRNNFDLVISDVY--------------MPD 81 (529)
Q Consensus 23 ~mrVLIVDDd----~~v~~~L~~~Le~~-gy~V~--~a~sa~eALe~L~e~~~~pDLVIlDi~--------------MPd 81 (529)
+..+++||-. ..+.+.++.+-+.. ...|. .+.+++.|..+++.. .|.|.+.+. .|.
T Consensus 293 GvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aG---AD~vkVGiGpGSiCtTr~v~GvG~PQ 369 (556)
T 4af0_A 293 GLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAG---ADGLRIGMGSGSICITQEVMAVGRPQ 369 (556)
T ss_dssp TCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTBCCTTTCCSCCCH
T ss_pred CCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcC---CCEEeecCCCCcccccccccCCCCcH
Confidence 5678888733 44555555444343 34444 567888888887754 788876653 222
Q ss_pred CCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEeC
Q 009670 82 MDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLLK 125 (529)
Q Consensus 82 mdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~K 125 (529)
...+--+........+|||.=-+-.....+.+|+.+||+..++=
T Consensus 370 ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 370 GTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMG 413 (556)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEc
Confidence 22221122223455799999888999999999999999998764
No 404
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=20.46 E-value=1.8e+02 Score=25.24 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEE
Q 009670 20 FPIGMRVLAVDDDQ-TCLKILEKFLRECQYEVT-VTNRAITALKMLRENRNNFDLVIS 75 (529)
Q Consensus 20 ~p~~mrVLIVDDd~-~v~~~L~~~Le~~gy~V~-~a~sa~eALe~L~e~~~~pDLVIl 75 (529)
-+..++|.|||.|. ..-+.+.+.|. +.+.+. ...+..+|.+.++..+ ++.+|.
T Consensus 7 ~~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~g~--~~~~l~ 61 (156)
T 3cni_A 7 STVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAVKKEK--APAIIV 61 (156)
T ss_dssp ----CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHHHHHT--CSEEEE
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHHHcCC--eeEEEE
Confidence 34568899998653 33344444555 444332 2468999999998875 665544
No 405
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=20.45 E-value=1.3e+02 Score=29.15 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=51.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH------------HHHHHHHhcCCCceEEEEecCCCCCC------
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAI------------TALKMLRENRNNFDLVISDVYMPDMD------ 83 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~------------eALe~L~e~~~~pDLVIlDi~MPdmd------ 83 (529)
.+|+|+|++.+......++ .|.+.|++|....-.. +..+.+ .+.|+||+- +|+.+
T Consensus 4 ~~m~i~v~~~~~~~~~~~~-~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~ii~~--~~~~~~~~~i~ 76 (293)
T 3d4o_A 4 TGKHVVIIGGDARQLEIIR-KLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDW----NTVDAILLP--ISGTNEAGKVD 76 (293)
T ss_dssp TTCEEEEECBCHHHHHHHH-HHHHTTCEEEEESCTTCC--CTTCEEECGGGCCG----GGCSEEECC--TTCCCTTCBCC
T ss_pred cCcEEEEECCCHHHHHHHH-HHHhCCCEEEEeccccccccccccccccchHHHH----hcCCEEEec--cccccCCceee
Confidence 4689999998877766654 4567789987653211 111112 147888862 11110
Q ss_pred ------HHHH-HHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEe
Q 009670 84 ------GFKL-LELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY 122 (529)
Q Consensus 84 ------GleL-L~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DY 122 (529)
...+ -+.+...+.+.+|. ++.+..+....+.+.|+.-+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~~i~-~G~d~id~~~~~~~~gi~v~ 121 (293)
T 3d4o_A 77 TIFSNESIVLTEEMIEKTPNHCVVY-SGISNTYLNQCMKKTNRTLV 121 (293)
T ss_dssp BSSCSCCCBCCHHHHHTSCTTCEEE-ESSCCHHHHHHHHHHTCEEE
T ss_pred cccccCCccchHHHHHhCCCCCEEE-ecCCCHHHHHHHHHcCCeEE
Confidence 0001 12334455667776 78877665456667776443
No 406
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=20.37 E-value=1.3e+02 Score=30.36 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=38.4
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 009670 24 MRVLAVDDDQT-----CLKILEKFLRECQYEVTVTN---------RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLE 89 (529)
Q Consensus 24 mrVLIVDDd~~-----v~~~L~~~Le~~gy~V~~a~---------sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~ 89 (529)
-|+|||-|... ..+.+...|++.|+++..+. ...++.+.+++. ++|+||- .-+..-+++.+
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~IIa---vGGGsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRND--SFDFVVG---LGGGSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTS--CCSEEEE---EESHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCChHHHHHHH
Confidence 58999887733 45677778887787755432 234455555444 4898874 23445566666
Q ss_pred HH
Q 009670 90 LV 91 (529)
Q Consensus 90 ~I 91 (529)
.+
T Consensus 116 ~i 117 (371)
T 1o2d_A 116 AV 117 (371)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 407
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=20.32 E-value=3.2e+02 Score=26.59 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=47.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEEEEC---CHHHHHHHHHhcCCCceEEEEecCCC-----------CCCH-HHH
Q 009670 24 MRVLAVDDDQTCLKILEKFLRECQY-EVTVTN---RAITALKMLRENRNNFDLVISDVYMP-----------DMDG-FKL 87 (529)
Q Consensus 24 mrVLIVDDd~~v~~~L~~~Le~~gy-~V~~a~---sa~eALe~L~e~~~~pDLVIlDi~MP-----------dmdG-leL 87 (529)
|||||..-.-.+-..+.+.|.+.|+ +|+... +.+...++++ .+|+||--.... ...| ..+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~----~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l 76 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALL----KADFIVHLAGVNRPEHDKEFSLGNVSYLDHV 76 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHH----HCSEEEECCCSBCTTCSTTCSSSCCBHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhc----cCCEEEECCcCCCCCCHHHHHHHHHHHHHHH
Confidence 7899999888888877777766687 887654 3333334443 288888533211 1223 335
Q ss_pred HHHHhcCCC-CcEEEEecC
Q 009670 88 LELVGLEMD-LPVVMLSAY 105 (529)
Q Consensus 88 L~~Ir~~~~-ipVIvlTa~ 105 (529)
++..+.... .++|++|+.
T Consensus 77 ~~a~~~~~~~~~~v~~Ss~ 95 (369)
T 3st7_A 77 LDILTRNTKKPAILLSSSI 95 (369)
T ss_dssp HHHHTTCSSCCEEEEEEEG
T ss_pred HHHHHHhCCCCeEEEeCch
Confidence 565544332 368877764
No 408
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=20.29 E-value=1.3e+02 Score=28.05 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=11.0
Q ss_pred CccEEEEEeCCHHH
Q 009670 22 IGMRVLAVDDDQTC 35 (529)
Q Consensus 22 ~~mrVLIVDDd~~v 35 (529)
.+.|||+||-|+..
T Consensus 54 ~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 54 KNNKVLLIDMDTQA 67 (267)
T ss_dssp TTSCEEEEEECTTC
T ss_pred CCCCEEEEECCCCC
Confidence 46899999988753
No 409
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=20.24 E-value=3.1e+02 Score=25.47 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCeEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecC
Q 009670 34 TCLKILEKFLRECQYEVTVTNR------AITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAY 105 (529)
Q Consensus 34 ~v~~~L~~~Le~~gy~V~~a~s------a~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~ 105 (529)
.+...++..+++.||.+..+.. ..+.++.+... .+|-||+--..+. + +.++.+.. ..+|||++...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~--~~~~~l~~-~~iPvV~~~~~ 96 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSG--NVDGFVLSSINYN-D--PRVQFLLK-QKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTT--CCSEEEECSCCTT-C--HHHHHHHH-TTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcC--CCCEEEEeecCCC-c--HHHHHHHh-cCCCEEEECCc
Confidence 4456667777788999876532 13456666544 4897777432222 2 44554432 46899988543
No 410
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=20.18 E-value=1.2e+02 Score=27.74 Aligned_cols=55 Identities=27% Similarity=0.281 Sum_probs=38.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCc-eEEEEecC
Q 009670 22 IGMRVLAVDDDQTCLKILEKFLRECQYEVTVTNRAITALKMLRENRNNF-DLVISDVY 78 (529)
Q Consensus 22 ~~mrVLIVDDd~~v~~~L~~~Le~~gy~V~~a~sa~eALe~L~e~~~~p-DLVIlDi~ 78 (529)
.+++|||..-.-.+-..+.+.|.+.|++|+.+....+.++.+... .+ .++..|+.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~--~~~~~~~~Dl~ 75 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER--GASDIVVANLE 75 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT--TCSEEEECCTT
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC--CCceEEEcccH
Confidence 378999999988888888887777799988664433334444433 36 77778876
No 411
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=20.14 E-value=1.7e+02 Score=29.88 Aligned_cols=78 Identities=4% Similarity=-0.024 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEe-EeCCCCHHHHH
Q 009670 55 RAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDY-LLKPVRMEELK 133 (529)
Q Consensus 55 sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DY-L~KP~~~eeL~ 133 (529)
+.++|+++++... ++++..++--++. +-++.++.++....+||+.-=...+.....++++.|+.|+ .+|+...-=+.
T Consensus 230 ~~~~ai~~~~~l~-~~~i~~iE~P~~~-~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 307 (410)
T 2gl5_A 230 GTNSAIQFAKAIE-KYRIFLYEEPIHP-LNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGIT 307 (410)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECSSCS-SCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHH-hcCCCeEECCCCh-hhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 5688888877653 4677777654553 2355555555445688776544556788889998887665 56776543343
Q ss_pred H
Q 009670 134 N 134 (529)
Q Consensus 134 ~ 134 (529)
.
T Consensus 308 ~ 308 (410)
T 2gl5_A 308 E 308 (410)
T ss_dssp H
T ss_pred H
Confidence 3
No 412
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=20.14 E-value=2.4e+02 Score=27.43 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhcCCcEeEe--CCCCHHHHHHHHHHHH
Q 009670 85 FKLLELVGLEMDLPVVMLSAYSDTKLVMKGINHGACDYLL--KPVRMEELKNTWQHVI 140 (529)
Q Consensus 85 leLL~~Ir~~~~ipVIvlTa~~d~e~v~~al~~GA~DYL~--KP~~~eeL~~~l~~vl 140 (529)
++.++.++...++||+.--..-+...+.++..+||+..++ .-++.+++...+..+.
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 7778877766789998765555665689999999999887 4466777766665543
No 413
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=20.11 E-value=1.7e+02 Score=36.97 Aligned_cols=85 Identities=6% Similarity=0.033 Sum_probs=54.5
Q ss_pred HHHHHHhCCCeEE-EECCHHHHHHH---HHhcCCCceEEE-EecC---CCCCCH--------HHHHHHHhcCCCCcEEEE
Q 009670 39 LEKFLRECQYEVT-VTNRAITALKM---LRENRNNFDLVI-SDVY---MPDMDG--------FKLLELVGLEMDLPVVML 102 (529)
Q Consensus 39 L~~~Le~~gy~V~-~a~sa~eALe~---L~e~~~~pDLVI-lDi~---MPdmdG--------leLL~~Ir~~~~ipVIvl 102 (529)
+.++++..|..+. .+.+..+|++. +.+. .+|.|+ +.+. -.+..| ++++..++...++|||+-
T Consensus 684 ~~~~l~~~gi~~i~~v~~~~~a~~~v~~l~~a--G~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaa 761 (2060)
T 2uva_G 684 ANEYIQTLGIRHISFKPGSVDAIQQVINIAKA--NPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAG 761 (2060)
T ss_dssp HHHHHHHSCCSEEEECCCSHHHHHHHHHHHHH--CTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHcCCeEEEecCCHHHHHHHHHHHHHc--CCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEe
Confidence 3445555566544 33445555554 1222 377666 2221 112222 456667777778999999
Q ss_pred ecCCCHHHHHHHH-----------hcCCcEeEeC
Q 009670 103 SAYSDTKLVMKGI-----------NHGACDYLLK 125 (529)
Q Consensus 103 Ta~~d~e~v~~al-----------~~GA~DYL~K 125 (529)
.+-.+.+.+.+++ .+||+...+=
T Consensus 762 GGI~~g~~i~aaltg~ws~~~g~palGAdgV~~G 795 (2060)
T 2uva_G 762 SGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFG 795 (2060)
T ss_dssp SSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEES
T ss_pred CCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEc
Confidence 9999999999999 9999997664
No 414
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.03 E-value=3.3e+02 Score=22.78 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHhCCCe
Q 009670 32 DQTCLKILEKFLRECQYE 49 (529)
Q Consensus 32 d~~v~~~L~~~Le~~gy~ 49 (529)
|....+...++.+..|.+
T Consensus 60 dkewaekairfvkslgaq 77 (134)
T 2l69_A 60 DKEWAEKAIRFVKSLGAQ 77 (134)
T ss_dssp SHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHhcCCe
Confidence 333333333444444443
No 415
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.01 E-value=1e+02 Score=29.79 Aligned_cols=82 Identities=7% Similarity=0.032 Sum_probs=43.0
Q ss_pred CCCccEEEEEeCCH-----HHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 009670 20 FPIGMRVLAVDDDQ-----TCLKILEKFLRECQYEVTVT--NRAITALKMLRENRNNFDLVISDVYMPDMDGFKLLELVG 92 (529)
Q Consensus 20 ~p~~mrVLIVDDd~-----~v~~~L~~~Le~~gy~V~~a--~sa~eALe~L~e~~~~pDLVIlDi~MPdmdGleLL~~Ir 92 (529)
+|..-+|.|+-|.. ...+.++..+++.|++++.. .+..+..+.++......|++++...---.+.++.+..+.
T Consensus 137 ~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~~~~~~~i~~~~ 216 (302)
T 3lkv_A 137 LPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAA 216 (302)
T ss_dssp STTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHHHHTHHHHHHHH
T ss_pred CCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcchhhHHHHHHHHH
Confidence 55556787775542 23445666677789887643 333333333333223588888753111112233333333
Q ss_pred cCCCCcEEE
Q 009670 93 LEMDLPVVM 101 (529)
Q Consensus 93 ~~~~ipVIv 101 (529)
....+||+-
T Consensus 217 ~~~~iPv~~ 225 (302)
T 3lkv_A 217 NQAKTPVFG 225 (302)
T ss_dssp HHTTCCEEE
T ss_pred hhcCCceee
Confidence 456678764
Done!