BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009671
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 105/501 (20%), Positives = 179/501 (35%), Gaps = 135/501 (26%)
Query: 53 NLPDECLACIFQSLS-SGDRKRCSLVCRRWLRIEGQSR---------------------- 89
+ P+E L +F + DR SLVC+ W IE R
Sbjct: 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPK 67
Query: 90 ----------HRLSLNAQSE-----LLPMIPSLFSRFDVVTKLALKCDRRSVSVGDDALI 134
H N + + P I ++ S + + ++ LK + V DD L
Sbjct: 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK----RMVVTDDCLE 123
Query: 135 LISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKL---------------------- 172
LI++ +N L L +C + G++ A C+ LK+L
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 173 --------SCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAA-------AEPIGPG 217
SC + + ++ C L+ L + R + A E +G G
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243
Query: 218 VAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKL---LQLVTDRVTSLV 274
+ ++ ++Y+G + G K LR L SG WD + L V + L
Sbjct: 244 GYTAEVR----PDVYSGLSVA--LSGCKELRCL-----SGFWDAVPAYLPAVYSVCSRLT 292
Query: 275 EIHLERIQVTDVGLAA-ISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKA 333
++L V L + C L+ + ++ E + GL +A CK LR+L + +
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE--DAGLEVLASTCKDLRELRVFPSEP 350
Query: 334 N------RIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALC----- 382
+ ++GL++V+ CP L+ ++ T +L +A N N+ R LC
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410
Query: 383 GSDTVG----DVEISCIAAKC---------------------VALKKLCIKSCPV---SD 414
D + D+ I C KK+ + S SD
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470
Query: 415 HGMEALAGGCPNLVKVKVKKC 435
GM + GC +L K++++ C
Sbjct: 471 LGMHHVLSGCDSLRKLEIRDC 491
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 155 TDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEEL 197
+D GM C L+KL C FG K A+L N S LE +
Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDK---ALLANASKLETM 508
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 103/483 (21%), Positives = 180/483 (37%), Gaps = 134/483 (27%)
Query: 70 DRKRCSLVCRRWLRIEGQSRHRLSL-------------------------NAQSELLPMI 104
DR SLVCRRW +I+ ++R +++ ++ + +I
Sbjct: 33 DRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92
Query: 105 PSLFSRF--DVVTKLA-----LKC--DRRSVSVGDDALILISQKCRNLTRLKLRACRELT 155
P + + VT+++ LK RR + D L + +L LKL C T
Sbjct: 93 PENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152
Query: 156 DAGMSVFAKNCKGLKKLSCGSCTFG---AKGMNAVLDNCSTLE----------ELSVKRL 202
G+ +C+ +K L +F K ++ + + ++LE ++S K L
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212
Query: 203 RGIT------------DGAAAEPIGPGVAASSLKTVC---------LKELYNGQCF---- 237
I D E +G AA++L+ C + E Y F
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272
Query: 238 ---GPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNC 294
G +G + LF + KL D + +L+E T+ I C
Sbjct: 273 CRLGLSYMGPNEMPI--LFPFAAQIRKL-----DLLYALLE--------TEDHCTLIQKC 317
Query: 295 LDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHID-GWKANRIGDE-------GLIAVAK 346
+LE++ + GL +A+ CK L++L I+ G + DE GLIA+A+
Sbjct: 318 PNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375
Query: 347 CCPNLQELVLIGVNPTRVSLEVLASNCQNL-----------ERLALCGSDT--------- 386
C L+ + + + T SLE + + +NL ER+ D
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 387 --------------VGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKV 432
+ D+ +S I ++ + + SD G+ + GCPNL K+++
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495
Query: 433 KKC 435
+ C
Sbjct: 496 RGC 498
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 38/239 (15%)
Query: 128 VGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAV 187
+GD L +++Q C+ L RL++ R + GM ++ +GL +G+ A+
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIE--RGADEQGM----EDEEGL---------VSQRGLIAL 373
Query: 188 LDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVC------------LKELYNGQ 235
C LE ++V + IT+ + E IG + LK +C + +L
Sbjct: 374 AQGCQELEYMAVY-VSDITN-ESLESIG-----TYLKNLCDFRLVLLDREERITDLPLDN 426
Query: 236 CFGPLIIGAKNLRTLKLF-RCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAIS-N 293
L+IG K LR + R G D L + ++ + L + +D GL S
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486
Query: 294 CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQ 352
C +L+ + + + + +AA + LR L + G++A+ G + L+ +A+ N++
Sbjct: 487 CPNLQKLEM-RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD-LMQMARPYWNIE 543
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 124 RSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKG 183
R + D L I Q N+ + L E +D G+ F++ C L+KL C F +
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGCCFSERA 504
Query: 184 MNAVLDNCSTLEELSVKRLRGITDG 208
+ A + +L L V+ R G
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRASMTG 529
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 25/164 (15%)
Query: 45 GTAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMI 104
G ++D +LPDE L IF L + + S VC+RW R+
Sbjct: 6 GVSWD---SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE---------------- 46
Query: 105 PSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAK 164
SL+ D + + V L I +C L L L R L+D ++ AK
Sbjct: 47 -SLWQTLDEFRVQHMDLSNSVIEVS--TLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK 102
Query: 165 NCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSVKRLRGITD 207
N L +L+ C+ F + +L +CS L+EL++ T+
Sbjct: 103 N-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 145
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 29/177 (16%)
Query: 45 GTAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMI 104
G ++D +LPDE L IF L + + S VC+RW R+ +L+ + L
Sbjct: 6 GVSWD---SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH-- 60
Query: 105 PSLFSRFDVVTKLALKCDRRSVS---------------------VGDDALILISQKCRNL 143
P + R +A +C R + + L I +C L
Sbjct: 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120
Query: 144 TRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSV 199
L L R L+D ++ AKN L +L+ C+ F + +L +CS L+EL++
Sbjct: 121 QNLSLEGLR-LSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 140 CRNLTRLKLR--ACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEEL 197
C+ L L L+ L + +++ K+ L++L C A+G AV+D S LE +
Sbjct: 214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 273
Query: 198 SVKRLR 203
++ LR
Sbjct: 274 GLQTLR 279
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 140 CRNLTRLKLR--ACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEEL 197
C+ L L L+ L + +++ K+ L++L C A+G AV+D S LE +
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274
Query: 198 SVKRLR 203
++ LR
Sbjct: 275 GLQTLR 280
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 45 GTAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRI 84
G ++D +LPDE L IF L + + S VC+RW R+
Sbjct: 6 GVSWD---SLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,913,906
Number of Sequences: 62578
Number of extensions: 534125
Number of successful extensions: 1213
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 30
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)