Query 009671
Match_columns 529
No_of_seqs 379 out of 3389
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 15:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 7.1E-38 1.5E-42 286.0 15.7 375 50-457 71-458 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 8.1E-27 1.8E-31 204.5 14.5 150 50-207 97-249 (419)
3 KOG4341 F-box protein containi 99.9 6.5E-25 1.4E-29 201.5 6.4 294 128-450 124-426 (483)
4 PLN00113 leucine-rich repeat r 99.8 3.6E-19 7.8E-24 197.8 17.8 384 105-518 86-489 (968)
5 PLN00113 leucine-rich repeat r 99.8 3.8E-19 8.2E-24 197.6 16.1 277 140-436 139-415 (968)
6 cd00116 LRR_RI Leucine-rich re 99.8 9.4E-18 2E-22 162.5 19.9 290 145-471 2-318 (319)
7 cd00116 LRR_RI Leucine-rich re 99.8 1.8E-17 4E-22 160.5 18.0 279 125-436 7-318 (319)
8 KOG4194 Membrane glycoprotein 99.7 3.3E-18 7.1E-23 163.8 0.7 203 220-436 220-427 (873)
9 KOG2120 SCF ubiquitin ligase, 99.7 2.4E-16 5.2E-21 139.1 10.5 204 245-456 185-392 (419)
10 KOG4194 Membrane glycoprotein 99.7 4.5E-17 9.8E-22 156.1 4.2 380 105-522 95-485 (873)
11 KOG1947 Leucine rich repeat pr 99.6 8.4E-16 1.8E-20 157.9 12.8 283 46-358 40-330 (482)
12 KOG1909 Ran GTPase-activating 99.5 2.1E-13 4.5E-18 123.6 14.4 208 239-452 86-326 (382)
13 KOG1947 Leucine rich repeat pr 99.5 1.2E-13 2.5E-18 142.1 11.2 273 139-448 159-450 (482)
14 KOG1909 Ran GTPase-activating 99.5 4.3E-13 9.3E-18 121.6 11.7 278 104-424 22-324 (382)
15 PLN03210 Resistant to P. syrin 99.3 5.1E-12 1.1E-16 141.3 12.2 261 219-515 632-904 (1153)
16 PLN03210 Resistant to P. syrin 99.3 1.2E-11 2.6E-16 138.3 9.7 159 270-442 777-947 (1153)
17 KOG3207 Beta-tubulin folding c 99.1 4.6E-11 9.9E-16 111.7 4.6 196 268-474 118-315 (505)
18 KOG0444 Cytoskeletal regulator 99.1 8.1E-13 1.8E-17 128.3 -7.7 86 349-439 268-353 (1255)
19 KOG3207 Beta-tubulin folding c 99.1 4.6E-11 9.9E-16 111.7 4.0 214 138-384 118-336 (505)
20 PF12937 F-box-like: F-box-lik 99.1 4.4E-11 9.6E-16 78.5 1.5 43 51-93 1-45 (47)
21 KOG0444 Cytoskeletal regulator 99.0 2.9E-11 6.3E-16 117.7 -2.8 343 140-522 6-357 (1255)
22 KOG0618 Serine/threonine phosp 98.9 2.1E-10 4.6E-15 116.8 0.1 244 168-436 242-487 (1081)
23 PRK15387 E3 ubiquitin-protein 98.9 9.8E-09 2.1E-13 107.4 10.3 84 349-446 382-465 (788)
24 KOG0618 Serine/threonine phosp 98.8 3E-10 6.5E-15 115.7 -1.5 227 161-411 258-487 (1081)
25 KOG3665 ZYG-1-like serine/thre 98.7 4E-08 8.7E-13 102.4 9.0 136 242-382 145-283 (699)
26 KOG4237 Extracellular matrix p 98.7 3.5E-09 7.5E-14 98.0 -0.1 125 345-474 270-400 (498)
27 COG5238 RNA1 Ran GTPase-activa 98.7 2.3E-07 4.9E-12 82.0 10.9 268 165-453 28-332 (388)
28 PRK15387 E3 ubiquitin-protein 98.6 6.8E-08 1.5E-12 101.2 8.5 244 112-420 222-465 (788)
29 COG5238 RNA1 Ran GTPase-activa 98.6 1.1E-06 2.3E-11 77.8 13.2 204 242-449 27-265 (388)
30 KOG3665 ZYG-1-like serine/thre 98.6 1.7E-07 3.7E-12 97.7 9.4 130 294-431 147-281 (699)
31 PF00646 F-box: F-box domain; 98.5 4.8E-08 1E-12 64.5 1.0 37 50-86 2-38 (48)
32 PRK15370 E3 ubiquitin-protein 98.4 1.1E-06 2.3E-11 92.8 10.5 258 141-448 178-437 (754)
33 KOG3864 Uncharacterized conser 98.4 1.7E-07 3.7E-12 79.3 3.5 104 350-455 102-208 (221)
34 smart00256 FBOX A Receptor for 98.4 4E-07 8.8E-12 57.8 4.0 33 54-86 1-33 (41)
35 KOG2982 Uncharacterized conser 98.4 6.2E-07 1.3E-11 80.4 5.5 109 143-281 47-156 (418)
36 PRK15370 E3 ubiquitin-protein 98.4 1.6E-06 3.4E-11 91.6 9.6 235 141-420 199-435 (754)
37 PF14580 LRR_9: Leucine-rich r 98.3 2.2E-07 4.8E-12 79.4 2.0 86 348-436 63-151 (175)
38 PF14580 LRR_9: Leucine-rich r 98.3 2.7E-07 5.8E-12 78.9 2.1 125 273-408 21-148 (175)
39 KOG0472 Leucine-rich repeat pr 98.2 1.5E-07 3.2E-12 87.7 -2.3 87 345-436 431-539 (565)
40 KOG2982 Uncharacterized conser 98.2 1.7E-06 3.8E-11 77.6 4.3 193 247-447 47-246 (418)
41 KOG1259 Nischarin, modulator o 98.2 1.2E-06 2.7E-11 78.6 3.4 127 294-436 283-410 (490)
42 KOG4237 Extracellular matrix p 98.1 3.9E-07 8.4E-12 84.8 -0.5 229 226-475 72-337 (498)
43 KOG0472 Leucine-rich repeat pr 98.1 7.1E-06 1.5E-10 76.8 6.8 111 291-413 431-541 (565)
44 KOG1259 Nischarin, modulator o 98.1 7E-06 1.5E-10 73.8 5.7 126 271-411 284-410 (490)
45 KOG1859 Leucine-rich repeat pr 97.8 1E-05 2.2E-10 81.4 2.0 206 262-518 75-293 (1096)
46 KOG1859 Leucine-rich repeat pr 97.7 6.4E-06 1.4E-10 82.7 -0.6 200 242-460 106-319 (1096)
47 KOG3864 Uncharacterized conser 97.6 4.5E-05 9.7E-10 65.0 3.1 84 273-359 103-186 (221)
48 KOG4308 LRR-containing protein 97.5 1.3E-05 2.7E-10 80.4 -1.2 198 246-449 88-313 (478)
49 KOG4308 LRR-containing protein 97.5 2.9E-05 6.2E-10 77.8 0.8 220 223-448 89-341 (478)
50 KOG4658 Apoptotic ATPase [Sign 97.5 7.8E-05 1.7E-09 80.4 3.7 15 188-202 567-581 (889)
51 KOG4658 Apoptotic ATPase [Sign 97.2 0.00012 2.7E-09 78.8 1.7 64 138-202 542-605 (889)
52 PF13855 LRR_8: Leucine rich r 97.2 6.4E-05 1.4E-09 52.4 -0.5 58 322-384 2-59 (61)
53 smart00367 LRR_CC Leucine-rich 97.0 0.00074 1.6E-08 37.5 2.7 25 424-448 1-25 (26)
54 PF13855 LRR_8: Leucine rich r 97.0 0.00018 3.8E-09 50.1 -0.2 34 272-305 2-35 (61)
55 KOG0617 Ras suppressor protein 97.0 2.1E-05 4.6E-10 64.9 -5.5 88 240-332 97-184 (264)
56 smart00367 LRR_CC Leucine-rich 96.5 0.0027 5.8E-08 35.2 2.7 24 373-396 1-24 (26)
57 KOG2123 Uncharacterized conser 96.5 0.00059 1.3E-08 61.2 -0.2 80 295-384 19-98 (388)
58 KOG0617 Ras suppressor protein 96.5 5E-05 1.1E-09 62.8 -6.4 187 243-445 31-219 (264)
59 KOG2123 Uncharacterized conser 96.5 0.00078 1.7E-08 60.4 0.4 106 244-356 18-124 (388)
60 PLN03150 hypothetical protein; 96.4 0.0072 1.6E-07 63.7 6.6 107 297-411 420-526 (623)
61 PLN03150 hypothetical protein; 96.3 0.009 1.9E-07 63.0 6.9 84 351-439 420-503 (623)
62 KOG2997 F-box protein FBX9 [Ge 96.3 0.0036 7.8E-08 57.1 3.2 46 46-91 102-154 (366)
63 PF12799 LRR_4: Leucine Rich r 96.2 0.0056 1.2E-07 39.0 3.2 37 400-439 1-37 (44)
64 KOG0281 Beta-TrCP (transducin 96.1 0.0024 5.2E-08 58.6 1.5 46 48-93 72-123 (499)
65 PLN03215 ascorbic acid mannose 96.1 0.0047 1E-07 59.2 3.5 38 49-86 2-40 (373)
66 KOG2739 Leucine-rich acidic nu 95.9 0.002 4.4E-08 57.5 0.1 63 243-305 63-126 (260)
67 PF13516 LRR_6: Leucine Rich r 95.8 0.007 1.5E-07 32.7 1.8 22 400-421 2-23 (24)
68 PRK15386 type III secretion pr 95.7 0.035 7.7E-07 54.1 7.3 36 165-205 50-85 (426)
69 KOG2739 Leucine-rich acidic nu 95.6 0.004 8.6E-08 55.7 0.6 38 294-331 64-101 (260)
70 PRK15386 type III secretion pr 95.5 0.017 3.7E-07 56.2 4.6 72 242-330 49-121 (426)
71 PF12799 LRR_4: Leucine Rich r 95.5 0.023 5E-07 36.2 3.7 34 271-305 1-34 (44)
72 COG4886 Leucine-rich repeat (L 95.3 0.015 3.2E-07 58.0 3.6 36 269-305 161-196 (394)
73 PF13516 LRR_6: Leucine Rich r 94.8 0.023 5.1E-07 30.7 1.9 24 424-448 1-24 (24)
74 smart00368 LRR_RI Leucine rich 94.6 0.046 9.9E-07 30.8 2.8 24 400-423 2-25 (28)
75 KOG1644 U2-associated snRNP A' 94.6 0.012 2.5E-07 50.6 0.5 37 347-383 111-149 (233)
76 COG4886 Leucine-rich repeat (L 94.6 0.026 5.6E-07 56.3 3.0 128 242-384 160-287 (394)
77 KOG1644 U2-associated snRNP A' 94.4 0.026 5.7E-07 48.5 2.2 37 399-435 112-150 (233)
78 KOG0531 Protein phosphatase 1, 94.3 0.004 8.8E-08 62.4 -3.3 109 242-363 92-200 (414)
79 KOG4579 Leucine-rich repeat (L 93.6 0.015 3.3E-07 46.7 -0.6 56 273-331 55-110 (177)
80 KOG0531 Protein phosphatase 1, 93.4 0.025 5.4E-07 56.7 0.4 127 272-413 73-199 (414)
81 PF13013 F-box-like_2: F-box-l 92.1 0.23 5E-06 38.6 4.0 30 50-79 21-50 (109)
82 KOG4579 Leucine-rich repeat (L 90.1 0.079 1.7E-06 42.7 -0.3 60 347-411 75-134 (177)
83 smart00368 LRR_RI Leucine rich 90.1 0.43 9.4E-06 26.8 2.8 24 167-190 2-25 (28)
84 KOG0274 Cdc4 and related F-box 88.0 0.24 5.2E-06 50.9 1.4 40 46-85 103-142 (537)
85 PF13504 LRR_7: Leucine rich r 86.7 0.47 1E-05 23.1 1.3 12 401-412 2-13 (17)
86 KOG3763 mRNA export factor TAP 86.6 1.6 3.6E-05 43.8 6.1 89 372-463 216-312 (585)
87 PF09372 PRANC: PRANC domain; 85.8 0.62 1.3E-05 35.7 2.3 27 48-74 69-95 (97)
88 KOG3763 mRNA export factor TAP 85.6 1.4 2.9E-05 44.3 5.0 84 294-380 217-307 (585)
89 KOG0532 Leucine-rich repeat (L 76.3 0.64 1.4E-05 46.8 -0.8 101 273-385 145-245 (722)
90 KOG3735 Tropomodulin and leiom 66.2 9.6 0.00021 36.0 4.4 79 295-373 198-279 (353)
91 PF13306 LRR_5: Leucine rich r 66.1 4.3 9.3E-05 32.7 2.1 8 296-303 104-111 (129)
92 PF13306 LRR_5: Leucine rich r 61.8 3.4 7.3E-05 33.3 0.7 56 270-330 57-112 (129)
93 PF07723 LRR_2: Leucine Rich R 57.0 11 0.00023 20.7 1.9 24 169-192 2-26 (26)
94 PF00560 LRR_1: Leucine Rich R 55.7 4.1 9E-05 21.2 0.1 18 505-522 1-18 (22)
95 PHA03100 ankyrin repeat protei 48.2 14 0.0003 37.9 2.7 30 48-77 445-474 (480)
96 smart00370 LRR Leucine-rich re 48.0 21 0.00044 19.2 2.2 15 322-336 3-17 (26)
97 smart00369 LRR_TYP Leucine-ric 48.0 21 0.00044 19.2 2.2 15 322-336 3-17 (26)
98 PHA02875 ankyrin repeat protei 46.9 12 0.00025 37.6 1.9 27 48-74 384-410 (413)
99 PHA02989 ankyrin repeat protei 45.3 19 0.00042 37.0 3.2 30 48-77 456-485 (494)
100 smart00365 LRR_SD22 Leucine-ri 44.7 20 0.00043 19.7 1.7 14 400-413 2-15 (26)
101 KOG0532 Leucine-rich repeat (L 42.2 6.5 0.00014 39.9 -0.7 32 273-305 213-244 (722)
102 KOG3735 Tropomodulin and leiom 41.5 65 0.0014 30.7 5.6 94 338-432 187-290 (353)
103 PHA02878 ankyrin repeat protei 40.2 19 0.0004 37.0 2.2 27 48-74 444-470 (477)
104 PF03382 DUF285: Mycoplasma pr 38.9 17 0.00037 29.0 1.3 7 372-378 59-65 (120)
105 KOG2502 Tub family proteins [G 37.0 52 0.0011 31.4 4.2 37 49-85 43-87 (355)
106 KOG3926 F-box proteins [Amino 35.6 31 0.00067 31.5 2.5 38 47-84 198-236 (332)
107 PHA02798 ankyrin-like protein; 33.1 32 0.00069 35.4 2.6 27 47-73 460-486 (489)
108 smart00364 LRR_BAC Leucine-ric 29.8 24 0.00053 19.4 0.6 17 505-521 3-19 (26)
109 PHA03095 ankyrin-like protein; 20.7 73 0.0016 32.4 2.6 24 52-75 443-466 (471)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=7.1e-38 Score=286.03 Aligned_cols=375 Identities=24% Similarity=0.439 Sum_probs=330.0
Q ss_pred cccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHh--hcccceeeeecccccc--ccchHHHhccCC-ceeEEEeeccCC
Q 009671 50 YISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRI--EGQSRHRLSLNAQSEL--LPMIPSLFSRFD-VVTKLALKCDRR 124 (529)
Q Consensus 50 ~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~--~~~~~~~~~l~~~~~~--~~~l~~~~~~~~-~l~~L~l~~~~~ 124 (529)
..-.||+|++..||++|+.+.+++++.+|+.|+.. ..+.|.++++-..... ..++..+.+++. .++.|.++ +
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlr---G 147 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLR---G 147 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhcccccccccc---c
Confidence 34579999999999999999999999999999985 5678999997543322 234556666664 58889887 5
Q ss_pred ccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc-cChHHHHHHHhcCCCCCEEecCCcc
Q 009671 125 SVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSVKRLR 203 (529)
Q Consensus 125 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~ 203 (529)
+..+.+..+..+...|||+++|.+.+|..+++..+..+.++|++|++|++..|. +++..++.+.+.|++|++|++++|.
T Consensus 148 ~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 148 CRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred cccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 788899999999999999999999999999999999999999999999999977 8999999999999999999999998
Q ss_pred CCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecc-c
Q 009671 204 GITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-Q 282 (529)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~ 282 (529)
.+...++. .+..++..++.+.+.+|.....+.+..+..+++.+.++++..| .
T Consensus 228 qi~~~gv~---------------------------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 228 QISGNGVQ---------------------------ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred hhhcCcch---------------------------HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 87775544 3447888899998889999999999999999999999998887 8
Q ss_pred cChHHHHHhhc-CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeeccc-
Q 009671 283 VTDVGLAAISN-CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVN- 360 (529)
Q Consensus 283 l~~~~~~~l~~-~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~- 360 (529)
++|.++..+.. |..|+.|..++|..+++..+..+..++++|+.|.+++| ..+++.++..+.++|+.|+.+++.++.
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c--~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC--QQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc--chhhhhhhhhhhcCChhhhhhcccccce
Confidence 99999887764 88999999999999999999999999999999999987 679999999999999999999999984
Q ss_pred CcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHH---cCCcCCEEEeccCC-CCHHHHHHHHhcCCCccEEEeccCC
Q 009671 361 PTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAA---KCVALKKLCIKSCP-VSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 361 i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
+++..+..+..+|+.|++|.++.|..++|+++..+.. +...|+.+.+++|+ +++..++.+. .|++|+.+++.+|.
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQ 437 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechh
Confidence 5555688888999999999999999999999888764 35689999999998 7777777777 79999999999999
Q ss_pred CCCHHHHHHHHhcCCcEEEEe
Q 009671 437 AVTTEGADWLRARREYVVVNL 457 (529)
Q Consensus 437 ~i~~~~~~~l~~~~~~l~l~l 457 (529)
.++.+++..++.++|..+++-
T Consensus 438 ~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 438 DVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhHHHHhhCccceehh
Confidence 999999999999999998753
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.1e-27 Score=204.52 Aligned_cols=150 Identities=25% Similarity=0.308 Sum_probs=94.4
Q ss_pred cccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhh--cccceeeeeccccccccchHHHhccCCceeEEEeeccCCccc
Q 009671 50 YISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIE--GQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALKCDRRSVS 127 (529)
Q Consensus 50 ~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~ 127 (529)
.|..|||||+..||+.|..+++.+++.|||||+++. .++|..+++.....-...+.++.++ ++..+.+. ...
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rla----r~~ 170 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLA----RSF 170 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcc----hhh
Confidence 389999999999999999999999999999999984 4678888876544333334444433 23333332 222
Q ss_pred cCHHHHH-HHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCC
Q 009671 128 VGDDALI-LISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGIT 206 (529)
Q Consensus 128 ~~~~~l~-~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 206 (529)
+.+..+. ...-.-..|++|||++ ..++...+..+...|.+|+.|.|.+..+++.-...+.+ ..+|+.|++++|.+++
T Consensus 171 ~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 171 MDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFT 248 (419)
T ss_pred hcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccc
Confidence 2333222 2222223577777776 46666667766667777777777777666554444333 3455555555555544
Q ss_pred c
Q 009671 207 D 207 (529)
Q Consensus 207 ~ 207 (529)
.
T Consensus 249 ~ 249 (419)
T KOG2120|consen 249 E 249 (419)
T ss_pred h
Confidence 4
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.91 E-value=6.5e-25 Score=201.47 Aligned_cols=294 Identities=25% Similarity=0.420 Sum_probs=244.1
Q ss_pred cCHHHHHHHHHcC-CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc-cChHHHHHHHhcCCCCCEEecCCccCC
Q 009671 128 VGDDALILISQKC-RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSVKRLRGI 205 (529)
Q Consensus 128 ~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~ 205 (529)
+...++..+...| ..|+.|.+.||..+.+..+..+...||++++|.+.+|. +++..+..+.+.|++|++|++..|..+
T Consensus 124 v~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i 203 (483)
T KOG4341|consen 124 VDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI 203 (483)
T ss_pred CCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh
Confidence 3344555555333 58999999999999999999999999999999999998 789999999999999999999988777
Q ss_pred CccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecc-ccC
Q 009671 206 TDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-QVT 284 (529)
Q Consensus 206 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~l~ 284 (529)
++..+. .+..+|++|++|++++|+.+....++.+..++..++.+.+.+| ...
T Consensus 204 T~~~Lk---------------------------~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~ 256 (483)
T KOG4341|consen 204 TDVSLK---------------------------YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE 256 (483)
T ss_pred HHHHHH---------------------------HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence 764332 2347899999999999998888888888888888888888777 666
Q ss_pred hHHHHHhh-cCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecc-cCc
Q 009671 285 DVGLAAIS-NCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGV-NPT 362 (529)
Q Consensus 285 ~~~~~~l~-~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~-~i~ 362 (529)
+..+..+. .++-+.++++..|..+++.++..+...|..|+.|+.+++ ..+++..+..+.+++++|+.|.+.+| +++
T Consensus 257 le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~--t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 257 LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC--TDITDEVLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC--CCCchHHHHHHhcCCCceEEEeccccchhh
Confidence 66666654 477788888888888899988888888888999998876 56888888888889999999999888 588
Q ss_pred HHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC-CCHHHHHHHHh---cCCCccEEEeccCCCC
Q 009671 363 RVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP-VSDHGMEALAG---GCPNLVKVKVKKCRAV 438 (529)
Q Consensus 363 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~---~~~~L~~L~l~~c~~i 438 (529)
+.++..+..+|+.|+.+++.+|..++|..+..++.+|+.|+.|.++.|. |+|+|+..+.. ....|+.+.+.+|+.+
T Consensus 335 d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 335 DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 8888888889999999999999888888888888889999999999885 88888887763 3457888899999988
Q ss_pred CHHHHHHHHhcC
Q 009671 439 TTEGADWLRARR 450 (529)
Q Consensus 439 ~~~~~~~l~~~~ 450 (529)
++...+.+....
T Consensus 415 ~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 415 TDATLEHLSICR 426 (483)
T ss_pred hHHHHHHHhhCc
Confidence 888888887643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=3.6e-19 Score=197.76 Aligned_cols=384 Identities=16% Similarity=0.075 Sum_probs=198.0
Q ss_pred HHHhccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHH
Q 009671 105 PSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGM 184 (529)
Q Consensus 105 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l 184 (529)
+..+..+++|+.|+++ .+.+.......+...+++|++|+++++ .++... . ...+++|++|++++|.+... +
T Consensus 86 ~~~~~~l~~L~~L~Ls----~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~-~ 156 (968)
T PLN00113 86 SSAIFRLPYIQTINLS----NNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSI-P--RGSIPNLETLDLSNNMLSGE-I 156 (968)
T ss_pred ChHHhCCCCCCEEECC----CCccCCcCChHHhccCCCCCEEECcCC-cccccc-C--ccccCCCCEEECcCCccccc-C
Confidence 3344556666666665 222222222223334566666666654 222110 0 01356677777776665321 2
Q ss_pred HHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHH
Q 009671 185 NAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQ 264 (529)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 264 (529)
...+..+++|++|++.++..... +...+ ..+++|+.|++.++.....++..+..+++|+.|+++++.. ... +.
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~--~p~~~---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~-~p 229 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGK--IPNSL---TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL-SGE-IP 229 (968)
T ss_pred ChHHhcCCCCCEEECccCccccc--CChhh---hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc-CCc-CC
Confidence 22244567777777766531111 11111 1456677777766655555556666677777777766532 111 11
Q ss_pred HHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHH
Q 009671 265 LVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAV 344 (529)
Q Consensus 265 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~ 344 (529)
.....+++|+.|++++|.++......+..+++|+.|+++++. +... +......+++|+.|++++|..... +...
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~ 303 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK-LSGP-IPPSIFSLQKLISLDLSDNSLSGE----IPEL 303 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe-eecc-CchhHhhccCcCEEECcCCeeccC----CChh
Confidence 122455667777777776665555556667777777777652 2211 111122356777777776542221 1122
Q ss_pred HhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcC
Q 009671 345 AKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGC 424 (529)
Q Consensus 345 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~ 424 (529)
...+++|+.|++++|.+.......+ ..+++|+.|++++|. ++.. +......+++|+.|++++|.++......+. .+
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~ 379 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNK-FSGE-IPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SS 379 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCC-CcCc-CChHHhCCCCCcEEECCCCeeEeeCChhHh-Cc
Confidence 3456777777777776665443334 567777888777764 2221 122223467788888887776544333443 45
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhcCCcE-EEEecc--------------CccccccccCCccccCCc----cCC-Cccc
Q 009671 425 PNLVKVKVKKCRAVTTEGADWLRARREYV-VVNLDS--------------GEAEHQDASDGGVQENGI----EFP-PQMV 484 (529)
Q Consensus 425 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~l-~l~l~~--------------~~~~~ld~~~~~~~~~~~----~~p-l~~l 484 (529)
++|+.|++.+|. ++...-..+.. .+.+ .+.+.. +.+..+|+++|.+..... .+| ++.+
T Consensus 380 ~~L~~L~l~~n~-l~~~~p~~~~~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 380 GNLFKLILFSNS-LEGEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred CCCCEEECcCCE-ecccCCHHHhC-CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 677777777765 43322222222 1111 222221 123445566665543321 233 6666
Q ss_pred ccCccccCCCchhHHHHHhhhhcccccccccccc
Q 009671 485 QPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRR 518 (529)
Q Consensus 485 ~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 518 (529)
.+++|......... .....|..|+|++|.+..
T Consensus 458 ~L~~n~~~~~~p~~--~~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 458 SLARNKFFGGLPDS--FGSKRLENLDLSRNQFSG 489 (968)
T ss_pred ECcCceeeeecCcc--cccccceEEECcCCccCC
Confidence 66666543222211 123467777777776653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=3.8e-19 Score=197.55 Aligned_cols=277 Identities=18% Similarity=0.107 Sum_probs=131.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVA 219 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (529)
.++|++|+++++ .+....... ...+++|++|++++|.+... +...+..+++|++|++.++.. ... +...++ .
T Consensus 139 l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l-~~~-~p~~l~---~ 210 (968)
T PLN00113 139 IPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQL-VGQ-IPRELG---Q 210 (968)
T ss_pred cCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCC-cCc-CChHHc---C
Confidence 456666666654 222111111 23456666666666654221 112233556666666665421 110 111111 4
Q ss_pred cCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCe
Q 009671 220 ASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEI 299 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 299 (529)
+.+|+.|++..+.....++..+..+++|++|++++|.. .. .+......+++|+.|++++|.+.......+..+++|+.
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-TG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee-cc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 45566666655554444555555666666666665431 11 11122234556666666666554443344455566666
Q ss_pred EEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEE
Q 009671 300 MHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERL 379 (529)
Q Consensus 300 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L 379 (529)
|++++|. +... +......+++|+.|++++|....... .....+++|+.|++++|.+.......+ ..+++|+.|
T Consensus 289 L~Ls~n~-l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L 361 (968)
T PLN00113 289 LDLSDNS-LSGE-IPELVIQLQNLEILHLFSNNFTGKIP----VALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVL 361 (968)
T ss_pred EECcCCe-eccC-CChhHcCCCCCcEEECCCCccCCcCC----hhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEE
Confidence 6666552 2111 12222335666666666543221111 112345666666666665543322223 455666666
Q ss_pred EccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 380 ALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 380 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
++++|. ++... ......+++|+.|++++|.++......+. .+++|+.|++.+|.
T Consensus 362 ~Ls~n~-l~~~~-p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~ 415 (968)
T PLN00113 362 DLSTNN-LTGEI-PEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNS 415 (968)
T ss_pred ECCCCe-eEeeC-ChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCCE
Confidence 666553 22111 11112345566666666655443333333 45666666666655
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=9.4e-18 Score=162.53 Aligned_cols=290 Identities=21% Similarity=0.219 Sum_probs=205.2
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHH---HHhcCCCCCEEecCCccCCC-ccccccccCCCccc
Q 009671 145 RLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNA---VLDNCSTLEELSVKRLRGIT-DGAAAEPIGPGVAA 220 (529)
Q Consensus 145 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~---~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~ 220 (529)
.|+|.+ ..+++..+..++..+.+|++|+++++.+++.++.. .+...++|++|++.++..-. ...+
T Consensus 2 ~l~L~~-~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~---------- 70 (319)
T cd00116 2 QLSLKG-ELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL---------- 70 (319)
T ss_pred cccccc-CcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH----------
Confidence 467765 36666677777777888999999999987665444 44567789999988652110 1110
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccCCC--chHHHHHHHhhcCCccEEEeeccccChHHHHHh----hcC
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGD--WDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAI----SNC 294 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l----~~~ 294 (529)
..+...+..+++|+.|++++|... ....+..+... ++|++|++++|.+++.+...+ ..+
T Consensus 71 --------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~ 135 (319)
T cd00116 71 --------------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL 135 (319)
T ss_pred --------------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhC
Confidence 112234456889999999987643 22233344444 669999999998886655443 456
Q ss_pred -CCCCeEEecCCCCCChhhHHH---HHHhCCCCcEEEecCcccCccChHHHHHHHh---cCccccceEeecccCcHHHHH
Q 009671 295 -LDLEIMHLVKTPECTNLGLAA---VAERCKLLRKLHIDGWKANRIGDEGLIAVAK---CCPNLQELVLIGVNPTRVSLE 367 (529)
Q Consensus 295 -~~L~~L~L~~~~~~~~~~l~~---l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~---~~~~L~~L~L~~~~i~~~~l~ 367 (529)
++|+.|++++|. ++..+... ....+++|++|++++| .+.+.++..+.. .+++|++|++++|.+++....
T Consensus 136 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n---~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 136 PPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANN---GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred CCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCC---CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 899999999984 55443333 3345678999999886 456555555443 346999999999999877655
Q ss_pred HH---HhcCCCCCEEEccCCCCCChhHHHHHHHcC----CcCCEEEeccCCCCHHHHHHHHh---cCCCccEEEeccCCC
Q 009671 368 VL---ASNCQNLERLALCGSDTVGDVEISCIAAKC----VALKKLCIKSCPVSDHGMEALAG---GCPNLVKVKVKKCRA 437 (529)
Q Consensus 368 ~l---~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~----~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~L~l~~c~~ 437 (529)
.+ ...+++|++|++++|. +++.++..++..+ +.|++|++++|.+++.+...+.+ .+++|+.+++.++.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~- 289 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK- 289 (319)
T ss_pred HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-
Confidence 44 3567899999999985 8887777777664 79999999999998776655543 35689999999998
Q ss_pred CCHHHHHHHHhcCCcEEEEeccCccccccccCCc
Q 009671 438 VTTEGADWLRARREYVVVNLDSGEAEHQDASDGG 471 (529)
Q Consensus 438 i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~ 471 (529)
+++++...+++... ...+.+..+|+.+|.
T Consensus 290 l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 318 (319)
T cd00116 290 FGEEGAQLLAESLL-----EPGNELESLWVKDDS 318 (319)
T ss_pred CcHHHHHHHHHHHh-----hcCCchhhcccCCCC
Confidence 99998888877531 112456777777765
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.8e-17 Score=160.48 Aligned_cols=279 Identities=22% Similarity=0.215 Sum_probs=192.9
Q ss_pred ccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCEEEecCcccC--hHHHH---HHHhcCCCCCE
Q 009671 125 SVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVF---AKNCKGLKKLSCGSCTFG--AKGMN---AVLDNCSTLEE 196 (529)
Q Consensus 125 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~~~--~~~l~---~~~~~~~~L~~ 196 (529)
+..+++.....+....++|+.|++.++ .+++.++..+ ....++|++|+++++.+. ...+. ..+..+++|+.
T Consensus 7 ~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 85 (319)
T cd00116 7 GELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85 (319)
T ss_pred cCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeE
Confidence 455554444555555777999999986 6766655444 345678999999998876 34333 33455789999
Q ss_pred EecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHH---Hhhc-CC
Q 009671 197 LSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLV---TDRV-TS 272 (529)
Q Consensus 197 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l---~~~~-~~ 272 (529)
|++.++..... .. ..+..+... ++|++|++++|. +.+.....+ ...+ ++
T Consensus 86 L~l~~~~~~~~-~~------------------------~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~ 138 (319)
T cd00116 86 LDLSDNALGPD-GC------------------------GVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPA 138 (319)
T ss_pred EEccCCCCChh-HH------------------------HHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCC
Confidence 99988642211 00 001112233 669999999875 343333332 3344 78
Q ss_pred ccEEEeeccccChHHHH----HhhcCCCCCeEEecCCCCCChhhHHHHHH---hCCCCcEEEecCcccCccChHHH---H
Q 009671 273 LVEIHLERIQVTDVGLA----AISNCLDLEIMHLVKTPECTNLGLAAVAE---RCKLLRKLHIDGWKANRIGDEGL---I 342 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~L~~~~~~~i~~~~l---~ 342 (529)
|++|++.+|.++..... .+..+++|++|++++| .+++.++..+.. ..++|+.|++++|. +++.+. .
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~---i~~~~~~~l~ 214 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG---LTDEGASALA 214 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc---cChHHHHHHH
Confidence 99999999988854433 3456789999999987 566666555543 34699999999874 444444 3
Q ss_pred HHHhcCccccceEeecccCcHHHHHHHHhcC----CCCCEEEccCCCCCChhHHHHHHH---cCCcCCEEEeccCCCCHH
Q 009671 343 AVAKCCPNLQELVLIGVNPTRVSLEVLASNC----QNLERLALCGSDTVGDVEISCIAA---KCVALKKLCIKSCPVSDH 415 (529)
Q Consensus 343 ~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~i~~~ 415 (529)
.....+++|++|++++|.+++..+..+...+ +.|++|++++|. +++.+...+.. .+++|+.+++++|.++++
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 4445678999999999999998887776654 799999999985 77666555543 457899999999999988
Q ss_pred HHHHHHhc---C-CCccEEEeccCC
Q 009671 416 GMEALAGG---C-PNLVKVKVKKCR 436 (529)
Q Consensus 416 ~l~~l~~~---~-~~L~~L~l~~c~ 436 (529)
+...+... . +.|+.|++.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 294 GAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHhhcCCchhhcccCCCC
Confidence 76655532 3 588888887654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=3.3e-18 Score=163.75 Aligned_cols=203 Identities=16% Similarity=0.168 Sum_probs=97.7
Q ss_pred cCccchhhccccccCCcchhhhhcCCCCCeEeccccC--CCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCC
Q 009671 220 ASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCS--GDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDL 297 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 297 (529)
+++|+.|.|..+.....-.-.+.++++|+.|.+.... .+.+. ..-.+.+++.|+|+.|.++...-..+-.+..|
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc----ceeeecccceeecccchhhhhhcccccccchh
Confidence 4455555554443333322334445555555554321 11111 11234456666666655554443334445566
Q ss_pred CeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCC
Q 009671 298 EIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLE 377 (529)
Q Consensus 298 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~ 377 (529)
+.|+++.+ .|........ +.+++|+.|+|++|..+.+.+..+.. +..|++|.|+.|.++...-.++ ..+.+|+
T Consensus 296 ~~L~lS~N-aI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af-~~lssL~ 368 (873)
T KOG4194|consen 296 EQLDLSYN-AIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAF-VGLSSLH 368 (873)
T ss_pred hhhccchh-hhheeecchh-hhcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHH-HHhhhhh
Confidence 66666554 2222222222 12566666666666555555544432 3356666666666554433333 4555666
Q ss_pred EEEccCCC---CCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 378 RLALCGSD---TVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 378 ~L~l~~~~---~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
+|+|..+. .+.| -.....+++.|+.|++.+|++....-+++. +++.|++|+|.++.
T Consensus 369 ~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~gNqlk~I~krAfs-gl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 369 KLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTGNQLKSIPKRAFS-GLEALEHLDLGDNA 427 (873)
T ss_pred hhcCcCCeEEEEEec--chhhhccchhhhheeecCceeeecchhhhc-cCcccceecCCCCc
Confidence 66665542 1222 122223466666666666665444444444 45666666666554
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-16 Score=139.11 Aligned_cols=204 Identities=21% Similarity=0.258 Sum_probs=172.0
Q ss_pred CCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCc
Q 009671 245 KNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLR 324 (529)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 324 (529)
..|++|+++. ..++...+..+...|.+|+.|.++++.++|.....+++..+|+.|+++.|..++..++..+...|..|.
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 4689999987 466777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccCccChHHHHHHHhc-CccccceEeecc--cCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCc
Q 009671 325 KLHIDGWKANRIGDEGLIAVAKC-CPNLQELVLIGV--NPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVA 401 (529)
Q Consensus 325 ~L~L~~~~~~~i~~~~l~~~~~~-~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 401 (529)
+|+|+-|. ..++. +..+..+ -++|+.|+|+|+ ++.+..+..+...||+|.+|+++.|..+++.-+..+. .++.
T Consensus 264 ~LNlsWc~--l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~ 339 (419)
T KOG2120|consen 264 ELNLSWCF--LFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNY 339 (419)
T ss_pred hcCchHhh--ccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcch
Confidence 99998663 33343 4444433 489999999998 5667788888899999999999999989985555554 5899
Q ss_pred CCEEEeccCC-CCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEE
Q 009671 402 LKKLCIKSCP-VSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVN 456 (529)
Q Consensus 402 L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~ 456 (529)
|++|.++.|. |..+.+..+- ..|.|.+|++.|| ++|..++.+.+..|.+.++
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~--vsdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGC--VSDTTMELLKEMLSHLKIN 392 (419)
T ss_pred heeeehhhhcCCChHHeeeec-cCcceEEEEeccc--cCchHHHHHHHhCcccccc
Confidence 9999999995 6666555554 6899999999999 5888899999988887553
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=4.5e-17 Score=156.06 Aligned_cols=380 Identities=15% Similarity=0.121 Sum_probs=185.6
Q ss_pred HHHhccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHH
Q 009671 105 PSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGM 184 (529)
Q Consensus 105 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l 184 (529)
..+|..+++|+.+.+. .+.+ ..+..+.....+|++|+|.+. .++...-..+ ...|.|+.|||+.|.++.-..
T Consensus 95 ~~~f~nl~nLq~v~l~----~N~L--t~IP~f~~~sghl~~L~L~~N-~I~sv~se~L-~~l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLN----KNEL--TRIPRFGHESGHLEKLDLRHN-LISSVTSEEL-SALPALRSLDLSRNLISEIPK 166 (873)
T ss_pred HHHHhcCCcceeeeec----cchh--hhcccccccccceeEEeeecc-ccccccHHHH-HhHhhhhhhhhhhchhhcccC
Confidence 3445555666666664 1111 112222223345666666542 3332222222 235556666666665432111
Q ss_pred HHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHH
Q 009671 185 NAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQ 264 (529)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 264 (529)
.. +..-.++++|+|.+. .++..+...+ ..+.+|..|.|..+.........+..+++|+.|+|....---.++
T Consensus 167 ~s-fp~~~ni~~L~La~N-~It~l~~~~F----~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~-- 238 (873)
T KOG4194|consen 167 PS-FPAKVNIKKLNLASN-RITTLETGHF----DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG-- 238 (873)
T ss_pred CC-CCCCCCceEEeeccc-cccccccccc----cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh--
Confidence 11 112245666666654 2333222111 133455555555554444444555556666666665532110111
Q ss_pred HHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHH
Q 009671 265 LVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAV 344 (529)
Q Consensus 265 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~ 344 (529)
.-..+++.|+.|.+..|.+....-..+-.+.++++|+|..+ .+....-..+. ++..|+.|++++|.+..|..+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~W--- 313 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSW--- 313 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhccccc-ccchhhhhccchhhhheeecchh---
Confidence 12234555666666655444333233334566666666554 22221111111 25667777777654444433332
Q ss_pred HhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC----CCHHHHHHH
Q 009671 345 AKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP----VSDHGMEAL 420 (529)
Q Consensus 345 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~----i~~~~l~~l 420 (529)
..+++|+.|+|++|+++.-.-..+ ..+..|++|.|+.+. ++.- -......+.+|++|||+.|. |.| +...+
T Consensus 314 -sftqkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Ns-i~~l-~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f 388 (873)
T KOG4194|consen 314 -SFTQKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNS-IDHL-AEGAFVGLSSLHKLDLRSNELSWCIED-AAVAF 388 (873)
T ss_pred -hhcccceeEeccccccccCChhHH-HHHHHhhhhcccccc-hHHH-HhhHHHHhhhhhhhcCcCCeEEEEEec-chhhh
Confidence 246777888887776654333333 344567777776653 2111 01112336789999999886 445 33334
Q ss_pred HhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccCCcc----CCCcccccCccccCCCch
Q 009671 421 AGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENGIE----FPPQMVQPSVASSRNTRS 496 (529)
Q Consensus 421 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~~~----~pl~~l~l~~c~~~~~~~ 496 (529)
. .++.|++|.+.|+. +..-.-.++ .....++++|+.+|+|..--.+ +-+.-+.+..-+...++.
T Consensus 389 ~-gl~~LrkL~l~gNq-lk~I~krAf----------sgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 389 N-GLPSLRKLRLTGNQ-LKSIPKRAF----------SGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred c-cchhhhheeecCce-eeecchhhh----------ccCcccceecCCCCcceeecccccccchhhhhhhcccceEEecc
Confidence 3 68999999999887 433222221 2224578888888887532211 114444444444444555
Q ss_pred hHHHHHhh---hhccccccccccccccCC
Q 009671 497 TSFKTRLG---LLSGRSLVACTLRRWSSG 522 (529)
Q Consensus 497 ~~~~~~~~---~l~~l~l~~~~~~~~~~~ 522 (529)
..|+.+-= .+..-...-|++--|=.|
T Consensus 457 l~Wl~qWl~~~~lq~sv~a~CayPe~Lad 485 (873)
T KOG4194|consen 457 LKWLAQWLYRRKLQSSVIAKCAYPEPLAD 485 (873)
T ss_pred HHHHHHHHHhcccccceeeeccCCccccc
Confidence 54444321 344445556665544443
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.65 E-value=8.4e-16 Score=157.93 Aligned_cols=283 Identities=33% Similarity=0.460 Sum_probs=156.1
Q ss_pred CCCCcccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhhcccceee-eeccccccccchHHHhccCCceeEEEeeccCC
Q 009671 46 TAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQSRHRL-SLNAQSELLPMIPSLFSRFDVVTKLALKCDRR 124 (529)
Q Consensus 46 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~ 124 (529)
+........|++....++......+......+++.|.........++ ..................+..+..+.......
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (482)
T KOG1947|consen 40 PRLRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGSLRLRLKSLSVSSVDLDLLASLLVRFKSLTLLDLLSLSK 119 (482)
T ss_pred cceeeeeccccchhhhcccccccccccccchhhhhhhhhhhhhhhhhhhcccCCcCHHHhhhhhhcchhhHHHHhccCcc
Confidence 45577788888999999998888888889999999988633322221 22221111222222233332222222221111
Q ss_pred ccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc--cChHHHHHHHhcCCCCCEEecCCc
Q 009671 125 SVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT--FGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 125 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
....+...+..+...+..+ .................+...+..++.+++..+. ........+...++.|+.|.+.+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~ 198 (482)
T KOG1947|consen 120 VSTLSLLSIFSLLVKLRNL-LLNLSLRSLLSGERLLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGC 198 (482)
T ss_pred ccccchhhhhhhhhhcchh-hccccccccccccchHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhccc
Confidence 1222223332233223332 2222222222222333333344455555555443 445555555666777777777777
Q ss_pred cCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEecccc-CCCch--HHHHHHHhhcCCccEEEee
Q 009671 203 RGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRC-SGDWD--KLLQLVTDRVTSLVEIHLE 279 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~l~~l~~~~~~L~~L~l~ 279 (529)
..+.+.++ ..+...++.|+.|++.+| ..... .....+...+++|+.|++.
T Consensus 199 ~~~~~~~~---------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 199 SKITDDSL---------------------------DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS 251 (482)
T ss_pred ccCChhhH---------------------------HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence 66555332 123355667777776652 22221 1223355566667777777
Q ss_pred ccc-cChHHHHHhhc-CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEee
Q 009671 280 RIQ-VTDVGLAAISN-CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLI 357 (529)
Q Consensus 280 ~~~-l~~~~~~~l~~-~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~ 357 (529)
.+. ++|.++..++. |++|+.|.+.+|..+++.++..+...|+.|++|+|++| ..+++.++..+...|++|+.|.+.
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c--~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC--HGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC--ccchHHHHHHHHHhCcchhhhhhh
Confidence 764 77777777664 77777777777766777777777777777777777765 455677777777677777666554
Q ss_pred c
Q 009671 358 G 358 (529)
Q Consensus 358 ~ 358 (529)
.
T Consensus 330 ~ 330 (482)
T KOG1947|consen 330 S 330 (482)
T ss_pred h
Confidence 3
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.53 E-value=2.1e-13 Score=123.64 Aligned_cols=208 Identities=20% Similarity=0.199 Sum_probs=143.8
Q ss_pred hhhhcCCCCCeEeccccCC--CchHHHHHHHhhcCCccEEEeeccccChHHHHHh-------------hcCCCCCeEEec
Q 009671 239 PLIIGAKNLRTLKLFRCSG--DWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAI-------------SNCLDLEIMHLV 303 (529)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l-------------~~~~~L~~L~L~ 303 (529)
+.+.++|+|+.|+|+++.. -....+..+...+..|++|.|.+|.+...+-..+ +.-++|+++..+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3446677888888877531 1233455566667778888888887766553332 235788888887
Q ss_pred CCCCCChh---hHHHHHHhCCCCcEEEecCcccCccChHHHH---HHHhcCccccceEeecccCcHHHHHHHH---hcCC
Q 009671 304 KTPECTNL---GLAAVAERCKLLRKLHIDGWKANRIGDEGLI---AVAKCCPNLQELVLIGVNPTRVSLEVLA---SNCQ 374 (529)
Q Consensus 304 ~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~---~~~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~ 374 (529)
.+. +.+. .+....+..+.|+.+.+..+ .|...++. .-+.+||+|+.|+|..|.++..+-..++ ..++
T Consensus 166 rNr-len~ga~~~A~~~~~~~~leevr~~qN---~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 166 RNR-LENGGATALAEAFQSHPTLEEVRLSQN---GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred ccc-cccccHHHHHHHHHhccccceEEEecc---cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 763 3333 34445556689999998775 45555543 3346789999999999988877654443 4567
Q ss_pred CCCEEEccCCCCCChhHHHHHH----HcCCcCCEEEeccCCCCHHHHHHHHh---cCCCccEEEeccCCCC--CHHHHHH
Q 009671 375 NLERLALCGSDTVGDVEISCIA----AKCVALKKLCIKSCPVSDHGMEALAG---GCPNLVKVKVKKCRAV--TTEGADW 445 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~l~~l~----~~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~L~l~~c~~i--~~~~~~~ 445 (529)
+|+.|+++.|. +.+.+...+. ...|.|+.|.+.+|.|+.++...+.. ..|.|++|+|.+|. + .++++.-
T Consensus 242 ~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~e 319 (382)
T KOG1909|consen 242 HLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDE 319 (382)
T ss_pred hheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHH
Confidence 88999999984 6666655444 44689999999999988776655542 35789999999998 6 6678888
Q ss_pred HHhcCCc
Q 009671 446 LRARREY 452 (529)
Q Consensus 446 l~~~~~~ 452 (529)
++..++.
T Consensus 320 i~~~~~~ 326 (382)
T KOG1909|consen 320 IASKFDT 326 (382)
T ss_pred HHHhccc
Confidence 8776533
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.49 E-value=1.2e-13 Score=142.06 Aligned_cols=273 Identities=26% Similarity=0.411 Sum_probs=164.7
Q ss_pred cCCCccEEecCCCC-CCCHHHHHHHHhcCCCCCEEEecCcc-cChHHHHHHHhcCCCCCEEecCCc-cCCCccccccccC
Q 009671 139 KCRNLTRLKLRACR-ELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSVKRL-RGITDGAAAEPIG 215 (529)
Q Consensus 139 ~~~~L~~L~L~~~~-~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~ 215 (529)
.+..++.+.+..+. .........+...++.|+.|.+..+. +++.++..+...+++|++|++.++ ..+......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 234 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL---- 234 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH----
Confidence 34455555555443 23344455555557888888888776 566666677777888888888763 222221110
Q ss_pred CCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccc-cChHHHHHhhc-
Q 009671 216 PGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQ-VTDVGLAAISN- 293 (529)
Q Consensus 216 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~- 293 (529)
.......|++|++|++.+|..+++..+..+...|++|+.|.+..+. +++.++..++.
T Consensus 235 ---------------------~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 235 ---------------------LLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred ---------------------hhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 0113355688888888888777888888888888888888877774 78888887764
Q ss_pred CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcc-cCccChH------------HHHHHHhcCccccceEeeccc
Q 009671 294 CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWK-ANRIGDE------------GLIAVAKCCPNLQELVLIGVN 360 (529)
Q Consensus 294 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~i~~~------------~l~~~~~~~~~L~~L~L~~~~ 360 (529)
|++|++|++++|..+++.++..+...|++|+.|.+.... +..+.+. .......+|++++.+.+..+.
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 788888888888887788788777778877776654321 1112222 222223334444444444443
Q ss_pred CcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC-CCHHHHHHHHhcCCCccEEEeccCCCCC
Q 009671 361 PTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP-VSDHGMEALAGGCPNLVKVKVKKCRAVT 439 (529)
Q Consensus 361 i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 439 (529)
+.+.+...+...|+.| + .++......+..++.|+++.|. +++..+......+..++.+++.+|..++
T Consensus 374 ~~~~~~~~~l~gc~~l-----------~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 374 ISDLGLELSLRGCPNL-----------T-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred ccCcchHHHhcCCccc-----------c-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 3333322222333322 2 2233333233336777777775 6666666666446677777788887777
Q ss_pred HHHHHHHHh
Q 009671 440 TEGADWLRA 448 (529)
Q Consensus 440 ~~~~~~l~~ 448 (529)
...+..+..
T Consensus 442 ~~~~~~~~~ 450 (482)
T KOG1947|consen 442 LKSLEGFAS 450 (482)
T ss_pred chhhhhhhc
Confidence 766655544
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.47 E-value=4.3e-13 Score=121.64 Aligned_cols=278 Identities=23% Similarity=0.306 Sum_probs=142.7
Q ss_pred hHHHhccCCceeEEEeeccCCccccCHHHHHHHH---HcCCCccEEecCCCC--CCCHH---H---HHHHHhcCCCCCEE
Q 009671 104 IPSLFSRFDVVTKLALKCDRRSVSVGDDALILIS---QKCRNLTRLKLRACR--ELTDA---G---MSVFAKNCKGLKKL 172 (529)
Q Consensus 104 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~---~~~~~L~~L~L~~~~--~~~~~---~---l~~l~~~~~~L~~L 172 (529)
+.........+++++++ .+.++.+..+.++ ..-++|+..++++.. ...+. . +...+..||+|++|
T Consensus 22 v~~~~~~~~s~~~l~ls----gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLS----GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred HHHHhcccCceEEEecc----CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 33444556778999998 6777877777766 345677777776531 11111 1 22233457899999
Q ss_pred EecCcccChH---HHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCe
Q 009671 173 SCGSCTFGAK---GMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRT 249 (529)
Q Consensus 173 ~L~~~~~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 249 (529)
+||.|-++.. ++..+++++..|++|.|.+| ++...+-..+- ..|..+.. ......-++|++
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~------~al~~l~~---------~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLG------RALFELAV---------NKKAASKPKLRV 161 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHH------HHHHHHHH---------HhccCCCcceEE
Confidence 9999987654 45566778888999999887 45443222110 00111110 001122345555
Q ss_pred EeccccCCCc--hHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEE
Q 009671 250 LKLFRCSGDW--DKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLH 327 (529)
Q Consensus 250 L~l~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~ 327 (529)
+...++.-.. -..+....+..+.|+.+.+..|.|...+... +..-+.+|++|+.|+
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a----------------------l~eal~~~~~LevLd 219 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA----------------------LAEALEHCPHLEVLD 219 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHH----------------------HHHHHHhCCcceeee
Confidence 5444432111 1122223333344555555444443333211 111223455555555
Q ss_pred ecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHH----HhcCCCCCEEEccCCCCCChhHHHHHH---HcCC
Q 009671 328 IDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVL----ASNCQNLERLALCGSDTVGDVEISCIA---AKCV 400 (529)
Q Consensus 328 L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l----~~~~~~L~~L~l~~~~~~~~~~l~~l~---~~~~ 400 (529)
|..|....-....+......+++|+.|++++|.+.+.+..++ ....|.|+.|.+.+|. ++-++...+. ..-|
T Consensus 220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKP 298 (382)
T ss_pred cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcch
Confidence 554321111122222223344566666666666655543333 2345667777776664 4433322222 1246
Q ss_pred cCCEEEeccCCC--CHHHHHHHHhcC
Q 009671 401 ALKKLCIKSCPV--SDHGMEALAGGC 424 (529)
Q Consensus 401 ~L~~L~l~~~~i--~~~~l~~l~~~~ 424 (529)
.|+.|+|++|.+ .++++..+...+
T Consensus 299 dL~kLnLngN~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 299 DLEKLNLNGNRLGEKDEGIDEIASKF 324 (382)
T ss_pred hhHHhcCCcccccccchhHHHHHHhc
Confidence 777777777776 666666666544
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=5.1e-12 Score=141.29 Aligned_cols=261 Identities=17% Similarity=0.206 Sum_probs=121.6
Q ss_pred ccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecc-ccChHHHHHhhcCCCC
Q 009671 219 AASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-QVTDVGLAAISNCLDL 297 (529)
Q Consensus 219 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L 297 (529)
.+++|+.+++........++. +..+++|+.|++.+|..+.. +......+++|+.|++++| .++..+.. ..+++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL 706 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSL 706 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCC
Confidence 345555555554433222322 34566777777776654321 1222334566777777665 33222111 145677
Q ss_pred CeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHH-----H-HHHHHh
Q 009671 298 EIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRV-----S-LEVLAS 371 (529)
Q Consensus 298 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~-----~-l~~l~~ 371 (529)
+.|++++|..+.. +.....+|+.|+++++....+... -.+++|++|.+.++..... . ......
T Consensus 707 ~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~i~~lP~~------~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 707 YRLNLSGCSRLKS-----FPDISTNISWLDLDETAIEEFPSN------LRLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred CEEeCCCCCCccc-----cccccCCcCeeecCCCcccccccc------ccccccccccccccchhhccccccccchhhhh
Confidence 7777776643221 111235677777766532222211 1345666666654321000 0 000112
Q ss_pred cCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC-CCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcC
Q 009671 372 NCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP-VSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARR 450 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 450 (529)
.+++|+.|++++|..+.. +..-..++++|+.|+|++|. ++. +.... .+++|+.|++++|..+...
T Consensus 776 ~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~--------- 841 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTF--------- 841 (1153)
T ss_pred ccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccccc---------
Confidence 345677777766643322 12223356677777777664 221 11111 3566777777777644321
Q ss_pred CcEEEEeccCccccccccCCccccCC---ccCC-CcccccCccccCCCchhHHHHHhhhhccccccccc
Q 009671 451 EYVVVNLDSGEAEHQDASDGGVQENG---IEFP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACT 515 (529)
Q Consensus 451 ~~l~l~l~~~~~~~ld~~~~~~~~~~---~~~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~ 515 (529)
|.. ...+..+++++|++.+-. ..++ ++.+.+++|........ ...++..|..+++.+|.
T Consensus 842 p~~-----~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 842 PDI-----STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccc-----ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCc
Confidence 100 022444555555554311 1122 56666666665443222 22344555555666664
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.26 E-value=1.2e-11 Score=138.33 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=96.5
Q ss_pred cCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCc
Q 009671 270 VTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCP 349 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~ 349 (529)
.++|+.|++++|.........++.+++|+.|++.+|..+.... ... .+++|+.|++++|. .+. .+.....
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP--~~~-~L~sL~~L~Ls~c~--~L~-----~~p~~~~ 846 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP--TGI-NLESLESLDLSGCS--RLR-----TFPDIST 846 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC--CCC-CccccCEEECCCCC--ccc-----ccccccc
Confidence 4678888888774333333446678888999988886544221 111 36788888888763 221 1112246
Q ss_pred cccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC-CCHHHH-------HHH-
Q 009671 350 NLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP-VSDHGM-------EAL- 420 (529)
Q Consensus 350 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~l-------~~l- 420 (529)
+|+.|+|+++.+..... .+ ..+++|+.|++.+|..+..- ..-...+++|+.|++++|. ++...+ ..+
T Consensus 847 nL~~L~Ls~n~i~~iP~-si-~~l~~L~~L~L~~C~~L~~l--~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~ 922 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPW-WI-EKFSNLSFLDMNGCNNLQRV--SLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMAT 922 (1153)
T ss_pred ccCEeECCCCCCccChH-HH-hcCCCCCEEECCCCCCcCcc--CcccccccCCCeeecCCCcccccccCCCCchhhhhhc
Confidence 88899998887765322 23 67888999999988766542 2223457788888888885 432111 111
Q ss_pred ---HhcCCCccEEEeccCCCCCHHH
Q 009671 421 ---AGGCPNLVKVKVKKCRAVTTEG 442 (529)
Q Consensus 421 ---~~~~~~L~~L~l~~c~~i~~~~ 442 (529)
...+|....+.+.+|.++...+
T Consensus 923 ~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 923 DNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred ccccccCCchhccccccccCCCchh
Confidence 1123344556677777766544
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.6e-11 Score=111.68 Aligned_cols=196 Identities=15% Similarity=0.153 Sum_probs=129.7
Q ss_pred hhcCCccEEEeeccccChHHH-HHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHh
Q 009671 268 DRVTSLVEIHLERIQVTDVGL-AAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAK 346 (529)
Q Consensus 268 ~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~ 346 (529)
..+.+|++..|.++.+.+.+. .....|++++.|+|+++-.-....+..+++.+|+|+.|+|+.|+.....+.....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~--- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL--- 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---
Confidence 345567777888777766655 3445688999999987744445667778888899999999887654443332222
Q ss_pred cCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCC
Q 009671 347 CCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPN 426 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 426 (529)
.+++|+.|.+++|.++...+..+...+|.|+.|.+.++..+...... .+.+..|+.|+|++|++-+.........+|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccc
Confidence 46789999999999998888888889999999999877433221111 1124579999999998555443344446889
Q ss_pred ccEEEeccCCCCCHHHHHHHHh-cCCcEEEEeccCccccccccCCcccc
Q 009671 427 LVKVKVKKCRAVTTEGADWLRA-RREYVVVNLDSGEAEHQDASDGGVQE 474 (529)
Q Consensus 427 L~~L~l~~c~~i~~~~~~~l~~-~~~~l~l~l~~~~~~~ld~~~~~~~~ 474 (529)
|+.|++..|. +++- +. -...+......+.++.|++.+|.|.+
T Consensus 273 L~~Lnls~tg-i~si-----~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 273 LNQLNLSSTG-IASI-----AEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhhhccccC-cchh-----cCCCccchhhhcccccceeeecccCcccc
Confidence 9999988887 4431 11 00001111223456777777777743
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.11 E-value=8.1e-13 Score=128.30 Aligned_cols=86 Identities=21% Similarity=0.171 Sum_probs=43.4
Q ss_pred ccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCcc
Q 009671 349 PNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLV 428 (529)
Q Consensus 349 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 428 (529)
.+|++|+++.|+++.- ......++.|+.|.+.++ +++-+++..-...+.+|+.+...+|.+.- ....++ .|+.|+
T Consensus 268 ~~lEtLNlSrNQLt~L--P~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglc-RC~kL~ 342 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVL--PDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLC-RCVKLQ 342 (1255)
T ss_pred hhhhhhccccchhccc--hHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhcccccc-Cchhhh-hhHHHH
Confidence 3455555555544331 111134455555555443 23434433333334556666666665211 123344 488888
Q ss_pred EEEeccCCCCC
Q 009671 429 KVKVKKCRAVT 439 (529)
Q Consensus 429 ~L~l~~c~~i~ 439 (529)
.|.|..+..||
T Consensus 343 kL~L~~NrLiT 353 (1255)
T KOG0444|consen 343 KLKLDHNRLIT 353 (1255)
T ss_pred Hhcccccceee
Confidence 88888777666
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.6e-11 Score=111.69 Aligned_cols=214 Identities=19% Similarity=0.140 Sum_probs=130.9
Q ss_pred HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCccc-ChHHHHHHHhcCCCCCEEecCCccCCCccccccccCC
Q 009671 138 QKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTF-GAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGP 216 (529)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (529)
.....|+++.|.++ .+...+.......|++++.|+|+.|-+ ....+..++..+|+|+.|+++........+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~------- 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS------- 189 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-------
Confidence 34667888888875 666666656667789999999998875 566777888899999999887653221100
Q ss_pred CcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccc-cChHHHHHhhcCC
Q 009671 217 GVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQ-VTDVGLAAISNCL 295 (529)
Q Consensus 217 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~ 295 (529)
+. .-..+++|+.|.++.| +++...+..+...+|+|+.|+++.|. +..... ...-+.
T Consensus 190 -----s~----------------~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~ 246 (505)
T KOG3207|consen 190 -----SN----------------TTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQ 246 (505)
T ss_pred -----cc----------------chhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhh
Confidence 00 0013577888888887 45566677777788888888888773 211110 011245
Q ss_pred CCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccC--hHHHHHHHhcCccccceEeecccCcH-HHHHHHHhc
Q 009671 296 DLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIG--DEGLIAVAKCCPNLQELVLIGVNPTR-VSLEVLASN 372 (529)
Q Consensus 296 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~--~~~l~~~~~~~~~L~~L~L~~~~i~~-~~l~~l~~~ 372 (529)
.|+.|+|+++..+........ ..+|.|+.|+++.+....+. +.+.......+|+|+.|++..|.+.+ ..+..+ ..
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~-~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~ 324 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKV-GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL-RT 324 (505)
T ss_pred HHhhccccCCccccccccccc-ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh-hc
Confidence 677788877755443333333 23677777777665432221 22222223456788888887777643 223333 45
Q ss_pred CCCCCEEEccCC
Q 009671 373 CQNLERLALCGS 384 (529)
Q Consensus 373 ~~~L~~L~l~~~ 384 (529)
+++|+.|.+..+
T Consensus 325 l~nlk~l~~~~n 336 (505)
T KOG3207|consen 325 LENLKHLRITLN 336 (505)
T ss_pred cchhhhhhcccc
Confidence 566676666544
No 20
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.07 E-value=4.4e-11 Score=78.52 Aligned_cols=43 Identities=53% Similarity=0.775 Sum_probs=36.0
Q ss_pred ccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhh--cccceeee
Q 009671 51 ISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIE--GQSRHRLS 93 (529)
Q Consensus 51 ~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~--~~~~~~~~ 93 (529)
|..||+||+.+||+||+++|+.++++|||+|++++ ..+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 57899999999999999999999999999999985 35676654
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.98 E-value=2.9e-11 Score=117.74 Aligned_cols=343 Identities=14% Similarity=0.117 Sum_probs=189.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVA 219 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (529)
.|-.+-+++++. .++...+..-.+.+.+++-|.|....+. .++.-+..+.+|++|.+....-++. .+-...
T Consensus 6 LpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~~v------hGELs~ 76 (1255)
T KOG0444|consen 6 LPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLISV------HGELSD 76 (1255)
T ss_pred cceeecccccCC-cCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhHhh------hhhhcc
Confidence 455677778773 4443334444456778888888877642 2333355788899998876533222 121226
Q ss_pred cCccchhhcccccc-CCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCC
Q 009671 220 ASSLKTVCLKELYN-GQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLE 298 (529)
Q Consensus 220 ~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 298 (529)
++.|+.+.++.+.. ...++.-+-.+..|+.|+|+... +.+ .+.-.+...++-.|+|++|.|...+-..+.++..|-
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 77888887766543 33344445567788888887642 111 111223445677888888877766655556666777
Q ss_pred eEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCE
Q 009671 299 IMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLER 378 (529)
Q Consensus 299 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~ 378 (529)
.|+|+++. -..+..-...+..|++|.|++|+.... .+..+ ..+..|+.|.+++++-+-..+..-+..+.+|..
T Consensus 154 fLDLS~Nr---Le~LPPQ~RRL~~LqtL~Ls~NPL~hf---QLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 154 FLDLSNNR---LEMLPPQIRRLSMLQTLKLSNNPLNHF---QLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred hhccccch---hhhcCHHHHHHhhhhhhhcCCChhhHH---HHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 77777652 222222233456788888887643222 12111 123456667777765443333322255667778
Q ss_pred EEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCC--HHHHHHHHhcCCcEEEE
Q 009671 379 LALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVT--TEGADWLRARREYVVVN 456 (529)
Q Consensus 379 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~--~~~~~~l~~~~~~l~l~ 456 (529)
++++.+. ++. +....-.+++|+.|+|++|.|+.-.+. ...+.+|++|+++.+. ++ .+++-.|..
T Consensus 227 vDlS~N~-Lp~--vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~k-------- 292 (1255)
T KOG0444|consen 227 VDLSENN-LPI--VPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQ-LTVLPDAVCKLTK-------- 292 (1255)
T ss_pred ccccccC-CCc--chHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhhhccccch-hccchHHHhhhHH--------
Confidence 8887653 221 222233467888888888887753322 1235678888888776 33 223322222
Q ss_pred eccCccccccccCCccccCCcc-----CC-CcccccCccccCCCchhHHHHHhhhhccccccccccccccCC
Q 009671 457 LDSGEAEHQDASDGGVQENGIE-----FP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRRWSSG 522 (529)
Q Consensus 457 l~~~~~~~ld~~~~~~~~~~~~-----~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 522 (529)
+..+-+.+|..+-.|+. +. +.+....+ +.-.-...-+-|.+.|..|+|..+.+.-+|.+
T Consensus 293 -----L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan--N~LElVPEglcRC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 293 -----LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN--NKLELVPEGLCRCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred -----HHHHHhccCcccccCCccchhhhhhhHHHHhhc--cccccCchhhhhhHHHHHhcccccceeechhh
Confidence 11122333333333311 11 22222211 12223345556677788888888888777754
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.91 E-value=2.1e-10 Score=116.82 Aligned_cols=244 Identities=20% Similarity=0.242 Sum_probs=114.6
Q ss_pred CCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCC
Q 009671 168 GLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNL 247 (529)
Q Consensus 168 ~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 247 (529)
+|++++++.+.+. .++.+...|.+|+.++..... +.. +..-+. ...+|+++....+.. ..+++...+...|
T Consensus 242 nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~-l~~--lp~ri~---~~~~L~~l~~~~nel-~yip~~le~~~sL 312 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS--NLPEWIGACANLEALNANHNR-LVA--LPLRIS---RITSLVSLSAAYNEL-EYIPPFLEGLKSL 312 (1081)
T ss_pred cceeeecchhhhh--cchHHHHhcccceEecccchh-HHh--hHHHHh---hhhhHHHHHhhhhhh-hhCCCccccccee
Confidence 6999999998864 345777789999999987653 211 111111 345555555544322 2233444567788
Q ss_pred CeEeccccC--CCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcE
Q 009671 248 RTLKLFRCS--GDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRK 325 (529)
Q Consensus 248 ~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 325 (529)
++|+|.... .+.+..+.... ..|+.|+.+.+.+....-..=...+.|+.|.+.++ .+++..+..+. ++++|+.
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~---~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~-~~~hLKV 387 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLN---ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFPVLV-NFKHLKV 387 (1081)
T ss_pred eeeeehhccccccchHHHhhhh---HHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchhhhc-cccceee
Confidence 888887643 11121111110 01222222222221111000001233444444444 33333333332 3455666
Q ss_pred EEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEE
Q 009671 326 LHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKL 405 (529)
Q Consensus 326 L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L 405 (529)
|+|++|+.+.+.+..+ .+++.|++|+|+||.++... ..+ ..|+.|++|...++... .+..++ .+++|+.+
T Consensus 388 LhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp-~tv-a~~~~L~tL~ahsN~l~---~fPe~~-~l~qL~~l 457 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLP-DTV-ANLGRLHTLRAHSNQLL---SFPELA-QLPQLKVL 457 (1081)
T ss_pred eeecccccccCCHHHH----hchHHhHHHhcccchhhhhh-HHH-HhhhhhHHHhhcCCcee---echhhh-hcCcceEE
Confidence 6666555444444333 23445666666666555433 122 34555555555443211 122222 24556666
Q ss_pred EeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 406 CIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 406 ~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
|++.|.++...+.... -.|+|++|+++|+.
T Consensus 458 DlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred ecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 6665555554444333 12556666666555
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=9.8e-09 Score=107.39 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=40.1
Q ss_pred ccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCcc
Q 009671 349 PNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLV 428 (529)
Q Consensus 349 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 428 (529)
.+|+.|++++|.++... ...++|+.|+++++. ++. +.. ...+|+.|++++|.++.- ...+. .+++|+
T Consensus 382 ~~L~~LdLs~N~Lt~LP-----~l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~NqLt~L-P~sl~-~L~~L~ 448 (788)
T PRK15387 382 SGLKELIVSGNRLTSLP-----VLPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYRNQLTRL-PESLI-HLSSET 448 (788)
T ss_pred cccceEEecCCcccCCC-----CcccCCCEEEccCCc-CCC--CCc---chhhhhhhhhccCccccc-ChHHh-hccCCC
Confidence 35666666665554211 112456666666553 221 111 123455666666655421 12222 355666
Q ss_pred EEEeccCCCCCHHHHHHH
Q 009671 429 KVKVKKCRAVTTEGADWL 446 (529)
Q Consensus 429 ~L~l~~c~~i~~~~~~~l 446 (529)
.|+|++++ ++......+
T Consensus 449 ~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 449 TVNLEGNP-LSERTLQAL 465 (788)
T ss_pred eEECCCCC-CCchHHHHH
Confidence 66666665 555544444
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.85 E-value=3e-10 Score=115.75 Aligned_cols=227 Identities=17% Similarity=0.132 Sum_probs=140.9
Q ss_pred HHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhh
Q 009671 161 VFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPL 240 (529)
Q Consensus 161 ~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 240 (529)
.....|++|+.|+...|.++. +..-+....+|+.|.+..+. +..+-..+....+|+.|.|..+.........
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~--lp~ri~~~~~L~~l~~~~ne------l~yip~~le~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVA--LPLRISRITSLVSLSAAYNE------LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred HHHHhcccceEecccchhHHh--hHHHHhhhhhHHHHHhhhhh------hhhCCCcccccceeeeeeehhccccccchHH
Confidence 334468999999999998632 22222345667777665442 1111122224677777877776554433333
Q ss_pred hhcCCC-CCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCC--CCCChhhHHHHH
Q 009671 241 IIGAKN-LRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT--PECTNLGLAAVA 317 (529)
Q Consensus 241 ~~~~~~-L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~--~~~~~~~l~~l~ 317 (529)
+..... |..|+.+....-+-. ..-....+.|+.|.+.+|.++|..+..+..+++|+.|+|+++ ..+++..+
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~---- 403 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL---- 403 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH----
Confidence 222222 344433321100000 011123345889999999999999999999999999999987 22333322
Q ss_pred HhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHH
Q 009671 318 ERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAA 397 (529)
Q Consensus 318 ~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 397 (529)
.+++.|++|+|+||+...+.+. ...|+.|++|...+|.+..-. .+ ..++.|+.++++.+ .++...+.....
T Consensus 404 ~kle~LeeL~LSGNkL~~Lp~t-----va~~~~L~tL~ahsN~l~~fP--e~-~~l~qL~~lDlS~N-~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTLPDT-----VANLGRLHTLRAHSNQLLSFP--EL-AQLPQLKVLDLSCN-NLSEVTLPEALP 474 (1081)
T ss_pred hchHHhHHHhcccchhhhhhHH-----HHhhhhhHHHhhcCCceeech--hh-hhcCcceEEecccc-hhhhhhhhhhCC
Confidence 3467899999999876555532 235778889988888776533 44 57889999999755 355544444332
Q ss_pred cCCcCCEEEeccCC
Q 009671 398 KCVALKKLCIKSCP 411 (529)
Q Consensus 398 ~~~~L~~L~l~~~~ 411 (529)
.|+|++||++||.
T Consensus 475 -~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 -SPNLKYLDLSGNT 487 (1081)
T ss_pred -CcccceeeccCCc
Confidence 2789999999986
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.71 E-value=4e-08 Score=102.37 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=93.2
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCK 321 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 321 (529)
..+|.|++|.+.+- .+....+..+...+|+|..||++++.+++. ..++.+++|+.|.+.+-.--+...+..+.. ++
T Consensus 145 ~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~ 220 (699)
T KOG3665|consen 145 TMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LK 220 (699)
T ss_pred hhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhc-cc
Confidence 45678888877763 344445777778888888888888877765 556778888888887664434456666665 78
Q ss_pred CCcEEEecCcccCccChHHHH---HHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEcc
Q 009671 322 LLRKLHIDGWKANRIGDEGLI---AVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALC 382 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i~~~~l~---~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~ 382 (529)
+|+.||+|........ .-+. .....+|+|+.||.+++.++...++.+...=|+|+.+.+-
T Consensus 221 ~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred CCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 8999999865422222 1111 1223468999999999999888888877766666666543
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.67 E-value=3.5e-09 Score=98.04 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=82.5
Q ss_pred HhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcC
Q 009671 345 AKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGC 424 (529)
Q Consensus 345 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~ 424 (529)
++.+++|++|+|++|.++...-.++ +....+++|.+..+. +... -..+.+++..|+.|+|.+|+|+-....++. ..
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N~-l~~v-~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRNK-LEFV-SSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-TL 345 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcch-HHHH-HHHhhhccccceeeeecCCeeEEEeccccc-cc
Confidence 5678999999999999988766666 777889999997664 2111 122345678999999999998776555544 46
Q ss_pred CCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCcc------ccccccCCcccc
Q 009671 425 PNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEA------EHQDASDGGVQE 474 (529)
Q Consensus 425 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~------~~ld~~~~~~~~ 474 (529)
..|.+|++-.++.-.+--+.++.+=+..-. ..+.+++ ..+++++..+.+
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~ 400 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVRQIPISDVAFGD 400 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHHHhhCC-CCCCCCCCCCchhccccchhccccc
Confidence 678999988777555555666655111111 2444443 356666655544
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=2.3e-07 Score=82.00 Aligned_cols=268 Identities=17% Similarity=0.148 Sum_probs=152.5
Q ss_pred cCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcC
Q 009671 165 NCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGA 244 (529)
Q Consensus 165 ~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 244 (529)
.+..++.++||+|.|+......+.....+-+.|.+-+...+......+-+ ..+|+. +.+.+..|
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~-----~~~L~~-----------Ll~aLlkc 91 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDEL-----YSNLVM-----------LLKALLKC 91 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHH-----HHHHHH-----------HHHHHhcC
Confidence 36677777788777777766666655544444433321111110000000 001111 12344667
Q ss_pred CCCCeEeccccCC--CchHHHHHHHhhcCCccEEEeeccccChHHH-------HHh------hcCCCCCeEEecCCCCC-
Q 009671 245 KNLRTLKLFRCSG--DWDKLLQLVTDRVTSLVEIHLERIQVTDVGL-------AAI------SNCLDLEIMHLVKTPEC- 308 (529)
Q Consensus 245 ~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~-------~~l------~~~~~L~~L~L~~~~~~- 308 (529)
|+|+..+++.+.. -..+.+..+......|+.|.+++|.+...+- ..+ +.-|.|+++..+.+...
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 8888888876431 1223344445555668888888876655432 222 23578888887765321
Q ss_pred -ChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHH----hcCccccceEeecccCcHHHHHHHH---hcCCCCCEEE
Q 009671 309 -TNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVA----KCCPNLQELVLIGVNPTRVSLEVLA---SNCQNLERLA 380 (529)
Q Consensus 309 -~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~----~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~ 380 (529)
+..-.....+.-.+|+.+.+..| .|.+.|+..++ ..+.+|+.|+|..|.++..+-..++ ..++.|+.|.
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qN---gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQN---GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeec---CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 12222223332257888888764 67777665543 3578999999999888776654443 3456789999
Q ss_pred ccCCCCCChhHHHHHHH-----cCCcCCEEEeccCC-----CCHHHHHHHH-hcCCCccEEEeccCCCCCHH--HHHHHH
Q 009671 381 LCGSDTVGDVEISCIAA-----KCVALKKLCIKSCP-----VSDHGMEALA-GGCPNLVKVKVKKCRAVTTE--GADWLR 447 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~~-----~~~~L~~L~l~~~~-----i~~~~l~~l~-~~~~~L~~L~l~~c~~i~~~--~~~~l~ 447 (529)
+..|- ++..+...+.. ..|+|..|...++. |.+..+..+. .+.|-|..|.+.|+. +... ..+.+.
T Consensus 249 lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~E~~d~~d~~~ 326 (388)
T COG5238 249 LNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IKELADFGDYYE 326 (388)
T ss_pred ccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-chhHHHHHHHHH
Confidence 98884 55555444432 25788888888875 3333333333 357788888888776 6543 455666
Q ss_pred hcCCcE
Q 009671 448 ARREYV 453 (529)
Q Consensus 448 ~~~~~l 453 (529)
..+..+
T Consensus 327 ~if~~~ 332 (388)
T COG5238 327 DIFEVV 332 (388)
T ss_pred HHhhhh
Confidence 554433
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.65 E-value=6.8e-08 Score=101.18 Aligned_cols=244 Identities=16% Similarity=0.125 Sum_probs=148.9
Q ss_pred CceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcC
Q 009671 112 DVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNC 191 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~ 191 (529)
++++.|.+. .+.++. +....++|+.|+++++ .++.. ....++|++|++++|.+. .+.. ..
T Consensus 222 ~~L~~L~L~----~N~Lt~-----LP~lp~~Lk~LdLs~N-~LtsL-----P~lp~sL~~L~Ls~N~L~--~Lp~---lp 281 (788)
T PRK15387 222 AHITTLVIP----DNNLTS-----LPALPPELRTLEVSGN-QLTSL-----PVLPPGLLELSIFSNPLT--HLPA---LP 281 (788)
T ss_pred cCCCEEEcc----CCcCCC-----CCCCCCCCcEEEecCC-ccCcc-----cCcccccceeeccCCchh--hhhh---ch
Confidence 368888887 333331 2233688999999874 55432 123468999999988754 2222 34
Q ss_pred CCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcC
Q 009671 192 STLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVT 271 (529)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 271 (529)
++|+.|++.++ .++. +.. ..++|+.|++.++.... ++. ....|+.|.+.+|. +.. +....+
T Consensus 282 ~~L~~L~Ls~N-~Lt~--LP~------~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~-L~~-----LP~lp~ 342 (788)
T PRK15387 282 SGLCKLWIFGN-QLTS--LPV------LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ-LTS-----LPTLPS 342 (788)
T ss_pred hhcCEEECcCC-cccc--ccc------cccccceeECCCCcccc-CCC---CcccccccccccCc-ccc-----cccccc
Confidence 56888888775 2332 111 23578888887654332 222 12467788877753 211 111224
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccc
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNL 351 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L 351 (529)
+|+.|++++|.++..+. ..++|+.|+++++ .++. +. ....+|+.|++++|....+.. ..++|
T Consensus 343 ~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N-~L~~--LP---~l~~~L~~LdLs~N~Lt~LP~--------l~s~L 404 (788)
T PRK15387 343 GLQELSVSDNQLASLPT----LPSELYKLWAYNN-RLTS--LP---ALPSGLKELIVSGNRLTSLPV--------LPSEL 404 (788)
T ss_pred ccceEecCCCccCCCCC----CCcccceehhhcc-cccc--Cc---ccccccceEEecCCcccCCCC--------cccCC
Confidence 69999999988775321 1357888888765 3332 22 223579999998875443322 23579
Q ss_pred cceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHH
Q 009671 352 QELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEAL 420 (529)
Q Consensus 352 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l 420 (529)
+.|++++|.++... . ...+|+.|+++++. ++. +..-...+++|+.|+|++|++++..+..+
T Consensus 405 ~~LdLS~N~LssIP--~---l~~~L~~L~Ls~Nq-Lt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 405 KELMVSGNRLTSLP--M---LPSGLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CEEEccCCcCCCCC--c---chhhhhhhhhccCc-ccc--cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 99999999876422 1 23467888888764 432 22223357889999999999887766655
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.60 E-value=1.1e-06 Score=77.83 Aligned_cols=204 Identities=15% Similarity=0.159 Sum_probs=131.9
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcC---CccEEEeecc---ccChHH-------HHHhhcCCCCCeEEecCCCCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVT---SLVEIHLERI---QVTDVG-------LAAISNCLDLEIMHLVKTPEC 308 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~---~L~~L~l~~~---~l~~~~-------~~~l~~~~~L~~L~L~~~~~~ 308 (529)
..+..++.++++++. +.......+..... +|+..++++. ...+.. ...+.+||+|+..+|+.+. +
T Consensus 27 ~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-f 104 (388)
T COG5238 27 EMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-F 104 (388)
T ss_pred HhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-c
Confidence 346788889998854 44455555554444 4444444442 122221 2344679999999999872 3
Q ss_pred Ch---hhHHHHHHhCCCCcEEEecCcccCccChHHHHH----H-----HhcCccccceEeecccCcHHH---HHHHHhcC
Q 009671 309 TN---LGLAAVAERCKLLRKLHIDGWKANRIGDEGLIA----V-----AKCCPNLQELVLIGVNPTRVS---LEVLASNC 373 (529)
Q Consensus 309 ~~---~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~----~-----~~~~~~L~~L~L~~~~i~~~~---l~~l~~~~ 373 (529)
+. ..+..+..+...|++|.+++|....+....+.. + +..-|.|+......|++.+-+ ....+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 32 334455566788999999887544443332221 1 122388999998888765433 23333333
Q ss_pred CCCCEEEccCCCCCChhHHHHHH----HcCCcCCEEEeccCCCCHHHHHHHHhc---CCCccEEEeccCCCCCHHHHHHH
Q 009671 374 QNLERLALCGSDTVGDVEISCIA----AKCVALKKLCIKSCPVSDHGMEALAGG---CPNLVKVKVKKCRAVTTEGADWL 446 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~l~~l~----~~~~~L~~L~l~~~~i~~~~l~~l~~~---~~~L~~L~l~~c~~i~~~~~~~l 446 (529)
.+|+++.+..+. +..+++..++ ..|++|+.|||..|.++..+-..++.. ++.|+.|.+.+|- ++.+|+...
T Consensus 185 ~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSV 262 (388)
T ss_pred cCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHH
Confidence 678999997764 7777766654 458899999999999888776666543 5578999999998 887777666
Q ss_pred Hhc
Q 009671 447 RAR 449 (529)
Q Consensus 447 ~~~ 449 (529)
...
T Consensus 263 ~~~ 265 (388)
T COG5238 263 LRR 265 (388)
T ss_pred HHH
Confidence 554
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.59 E-value=1.7e-07 Score=97.72 Aligned_cols=130 Identities=19% Similarity=0.193 Sum_probs=54.3
Q ss_pred CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcH-HHHHHHHhc
Q 009671 294 CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTR-VSLEVLASN 372 (529)
Q Consensus 294 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~-~~l~~l~~~ 372 (529)
+|+|++|.+.+- .+....+..+...+|+|..|++++..+..+ .-...+++|+.|.+.+-.+.. ..+..+ -.
T Consensus 147 LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~ 218 (699)
T KOG3665|consen 147 LPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISRLKNLQVLSMRNLEFESYQDLIDL-FN 218 (699)
T ss_pred CcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc------HHHhccccHHHHhccCCCCCchhhHHHH-hc
Confidence 455555555443 222223444444445555555554322111 111234455555554444433 233333 24
Q ss_pred CCCCCEEEccCCCCCChhH-HHH---HHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEE
Q 009671 373 CQNLERLALCGSDTVGDVE-ISC---IAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVK 431 (529)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~-l~~---l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~ 431 (529)
+++|+.|+++......+.. +.. ....+|+|+.||.++..++++.++.+...-|+|+.+.
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 4555555555443222221 111 1112455555555555555555555544444444443
No 31
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.47 E-value=4.8e-08 Score=64.54 Aligned_cols=37 Identities=41% Similarity=0.589 Sum_probs=31.5
Q ss_pred cccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhhc
Q 009671 50 YISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEG 86 (529)
Q Consensus 50 ~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~~ 86 (529)
+|.+||+|++.+||++|+..|+.++++|||+|++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence 5788999999999999999999999999999999844
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.43 E-value=1.1e-06 Score=92.83 Aligned_cols=258 Identities=12% Similarity=0.090 Sum_probs=142.2
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCccc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAA 220 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 220 (529)
.+...|++.+. .++.. .. ...++|+.|++++|.++. ++.. ..++|+.|++.++. ++. +... ..
T Consensus 178 ~~~~~L~L~~~-~LtsL--P~--~Ip~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~-Lts--LP~~-----l~ 240 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI--PA--CIPEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQ-LTS--IPAT-----LP 240 (754)
T ss_pred cCceEEEeCCC-CcCcC--Cc--ccccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCc-ccc--CChh-----hh
Confidence 45677777763 33321 11 012468888888887652 2211 23578888887652 332 1111 12
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeE
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 300 (529)
.+|+.|.+.++... .++..+ ..+|+.|+++++. +.. ++. ...++|+.|++++|.++..... + .++|+.|
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L 309 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERL--PSALQSLDLFHNK-ISC--LPE--NLPEELRYLSVYDNSIRTLPAH-L--PSGITHL 309 (754)
T ss_pred ccccEEECcCCccC-cCChhH--hCCCCEEECcCCc-cCc--ccc--ccCCCCcEEECCCCccccCccc-c--hhhHHHH
Confidence 35666766665443 222222 2467888887542 221 111 1124688888888766542211 1 2356777
Q ss_pred EecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEE
Q 009671 301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 301 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
+++++. ++.. .. ...++|+.|++++|....+... -+++|+.|++++|.++...- .+ .+.|++|+
T Consensus 310 ~Ls~N~-Lt~L--P~--~l~~sL~~L~Ls~N~Lt~LP~~-------l~~sL~~L~Ls~N~L~~LP~-~l---p~~L~~Ld 373 (754)
T PRK15370 310 NVQSNS-LTAL--PE--TLPPGLKTLEAGENALTSLPAS-------LPPELQVLDVSKNQITVLPE-TL---PPTITTLD 373 (754)
T ss_pred HhcCCc-cccC--Cc--cccccceeccccCCccccCChh-------hcCcccEEECCCCCCCcCCh-hh---cCCcCEEE
Confidence 777652 2211 11 0135788888887654444321 13688888888887763221 12 35788888
Q ss_pred ccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCH--HHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHh
Q 009671 381 LCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSD--HGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRA 448 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 448 (529)
+++|. ++.-. ..+ .+.|+.|++++|.++. ..+..+...++.+..|++.+++ ++...++.+..
T Consensus 374 Ls~N~-Lt~LP-~~l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np-ls~~tl~~L~~ 437 (754)
T PRK15370 374 VSRNA-LTNLP-ENL---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP-FSERTIQNMQR 437 (754)
T ss_pred CCCCc-CCCCC-HhH---HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC-ccHHHHHHHHH
Confidence 88874 33211 011 1358888888887552 2334444456788888888888 77766666543
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=1.7e-07 Score=79.34 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=90.4
Q ss_pred cccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC-CCHHHHHHHHhcCCCcc
Q 009671 350 NLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP-VSDHGMEALAGGCPNLV 428 (529)
Q Consensus 350 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~ 428 (529)
.++.++-+++.|..+++..+ ..++.++.|.+.+|..+.|.++..+..-.++|+.|+|++|+ ||+.|+..+. .+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 46778888899999999998 89999999999999999999999999888999999999996 9999999998 599999
Q ss_pred EEEeccCCCCCHH--HHHHHHhcCCcEEE
Q 009671 429 KVKVKKCRAVTTE--GADWLRARREYVVV 455 (529)
Q Consensus 429 ~L~l~~c~~i~~~--~~~~l~~~~~~l~l 455 (529)
.|.+.+-+.+..- ....|.+.+|.+++
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCcccce
Confidence 9999988766543 45566668888766
No 34
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.39 E-value=4e-07 Score=57.79 Aligned_cols=33 Identities=39% Similarity=0.566 Sum_probs=31.1
Q ss_pred CCHHHHHHHHccCChhhhhHHHHHhHHHHHhhc
Q 009671 54 LPDECLACIFQSLSSGDRKRCSLVCRRWLRIEG 86 (529)
Q Consensus 54 LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~~ 86 (529)
||+|++.+||.+++..|+.+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999843
No 35
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=6.2e-07 Score=80.37 Aligned_cols=109 Identities=21% Similarity=0.209 Sum_probs=68.1
Q ss_pred ccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCccc-ChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccC
Q 009671 143 LTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTF-GAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAAS 221 (529)
Q Consensus 143 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 221 (529)
++-|.+.+|.--+...+..+...+..++.++|.+|.+ ..+.+..+++++|.|+.|+++...--.+ ++.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~------I~~----- 115 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD------IKS----- 115 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc------ccc-----
Confidence 4455666653223333556666788899999999986 5667888888999999998876432111 100
Q ss_pred ccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecc
Q 009671 222 SLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI 281 (529)
Q Consensus 222 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 281 (529)
.-....+|++|-+.+ ..++-..........|.+++|+++.|
T Consensus 116 ------------------lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 116 ------------------LPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ------------------CcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 001235677777766 34444555556666777777777665
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.35 E-value=1.6e-06 Score=91.56 Aligned_cols=235 Identities=16% Similarity=0.171 Sum_probs=128.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCccc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAA 220 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 220 (529)
++|+.|+++++ .++.. .. ...++|++|++++|.+.. ++.. ..++|+.|+++++. +.. ++.. -.
T Consensus 199 ~~L~~L~Ls~N-~LtsL--P~--~l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls~N~-L~~--LP~~-----l~ 261 (754)
T PRK15370 199 EQITTLILDNN-ELKSL--PE--NLQGNIKTLYANSNQLTS--IPAT--LPDTIQEMELSINR-ITE--LPER-----LP 261 (754)
T ss_pred cCCcEEEecCC-CCCcC--Ch--hhccCCCEEECCCCcccc--CChh--hhccccEEECcCCc-cCc--CChh-----Hh
Confidence 35666666653 33321 11 012467777777666431 1110 12356666666552 221 1111 11
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeE
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 300 (529)
.+|+.|++.++... .++..+ +++|+.|++++|. +.. +.. ...++|+.|++++|.++..+.. -.++|+.|
T Consensus 262 s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~-Lt~--LP~--~lp~sL~~L~Ls~N~Lt~LP~~---l~~sL~~L 330 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNS-IRT--LPA--HLPSGITHLNVQSNSLTALPET---LPPGLKTL 330 (754)
T ss_pred CCCCEEECcCCccC-cccccc--CCCCcEEECCCCc-ccc--Ccc--cchhhHHHHHhcCCccccCCcc---ccccceec
Confidence 34666666544332 222211 2578888888763 221 100 0113578888888877643211 13688888
Q ss_pred EecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEE
Q 009671 301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 301 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
++++|. ++.. ... -+++|+.|++++|....+.. . ..++|+.|++++|.++...- .+. ..|+.|+
T Consensus 331 ~Ls~N~-Lt~L--P~~--l~~sL~~L~Ls~N~L~~LP~-~------lp~~L~~LdLs~N~Lt~LP~-~l~---~sL~~Ld 394 (754)
T PRK15370 331 EAGENA-LTSL--PAS--LPPELQVLDVSKNQITVLPE-T------LPPTITTLDVSRNALTNLPE-NLP---AALQIMQ 394 (754)
T ss_pred cccCCc-cccC--Chh--hcCcccEEECCCCCCCcCCh-h------hcCCcCEEECCCCcCCCCCH-hHH---HHHHHHh
Confidence 888773 3321 111 13689999998875443332 1 13689999999988764321 121 2578888
Q ss_pred ccCCCCCCh--hHHHHHHHcCCcCCEEEeccCCCCHHHHHHH
Q 009671 381 LCGSDTVGD--VEISCIAAKCVALKKLCIKSCPVSDHGMEAL 420 (529)
Q Consensus 381 l~~~~~~~~--~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l 420 (529)
+++|. ++. ..+..+...++++..|++.+|+++...+..+
T Consensus 395 Ls~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 395 ASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred hccCC-cccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 88774 332 2345555556889999999999887666654
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=2.2e-07 Score=79.39 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=30.7
Q ss_pred CccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCCh-hHHHHHHHcCCcCCEEEeccCCCCHHH--HHHHHhcC
Q 009671 348 CPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGD-VEISCIAAKCVALKKLCIKSCPVSDHG--MEALAGGC 424 (529)
Q Consensus 348 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~i~~~~--l~~l~~~~ 424 (529)
+++|+.|++++|.+++..- .+...+|+|++|.++++. +.+ ..+..+ ..+++|+.|++.+|++++.. -..+...+
T Consensus 63 L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L~~N~-I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSISE-GLDKNLPNLQELYLSNNK-ISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp -TT--EEE--SS---S-CH-HHHHH-TT--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred hhhhhhcccCCCCCCcccc-chHHhCCcCCEEECcCCc-CCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 4556666666665554321 122345666666665553 222 112222 24677777777777755321 12233357
Q ss_pred CCccEEEeccCC
Q 009671 425 PNLVKVKVKKCR 436 (529)
Q Consensus 425 ~~L~~L~l~~c~ 436 (529)
|+|+.|+-....
T Consensus 140 P~Lk~LD~~~V~ 151 (175)
T PF14580_consen 140 PSLKVLDGQDVT 151 (175)
T ss_dssp TT-SEETTEETT
T ss_pred ChhheeCCEEcc
Confidence 777777655433
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=2.7e-07 Score=78.91 Aligned_cols=125 Identities=26% Similarity=0.329 Sum_probs=34.3
Q ss_pred ccEEEeeccccChHHHHHhh-cCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccc
Q 009671 273 LVEIHLERIQVTDVGLAAIS-NCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNL 351 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L 351 (529)
+++|+|.++.++.. ..++ .+.+|+.|+++++ .+... ..+ ..++.|++|++++|....+.+ + +...+|+|
T Consensus 21 ~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N-~I~~l--~~l-~~L~~L~~L~L~~N~I~~i~~-~---l~~~lp~L 90 (175)
T PF14580_consen 21 LRELNLRGNQISTI--ENLGATLDKLEVLDLSNN-QITKL--EGL-PGLPRLKTLDLSNNRISSISE-G---LDKNLPNL 90 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---S-CH-H---HHHH-TT-
T ss_pred cccccccccccccc--cchhhhhcCCCEEECCCC-CCccc--cCc-cChhhhhhcccCCCCCCcccc-c---hHHhCCcC
Confidence 45555555544432 2233 2455666666555 22211 111 124566666666654333321 1 22245666
Q ss_pred cceEeecccCcHHH-HHHHHhcCCCCCEEEccCCCCCChhH-HHHHHHcCCcCCEEEec
Q 009671 352 QELVLIGVNPTRVS-LEVLASNCQNLERLALCGSDTVGDVE-ISCIAAKCVALKKLCIK 408 (529)
Q Consensus 352 ~~L~L~~~~i~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~-l~~l~~~~~~L~~L~l~ 408 (529)
++|.+++|.|.+.. +..+ ..+|+|+.|++.+++-..... -..+...+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 66666666554421 2223 456666666666664221222 22233446677766644
No 39
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.18 E-value=1.5e-07 Score=87.67 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=49.2
Q ss_pred HhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCCh--------hHHHHH--------------HHcCCcC
Q 009671 345 AKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGD--------VEISCI--------------AAKCVAL 402 (529)
Q Consensus 345 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--------~~l~~l--------------~~~~~~L 402 (529)
...+++|..|++++|-+.+-..+. ..+..|+.|+++.+. +.. ..++.+ ..++.+|
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~--~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEM--GSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHhhhcceeeecccchhhhcchhh--hhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 345678888888888665544332 344558888887653 110 000000 1234567
Q ss_pred CEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 403 KKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 403 ~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
..||+.+|.+.. +..+..+|.+|++|.+.|++
T Consensus 508 ~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 508 TTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ceeccCCCchhh--CChhhccccceeEEEecCCc
Confidence 777777765422 23334467777777777766
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.7e-06 Score=77.56 Aligned_cols=193 Identities=16% Similarity=0.094 Sum_probs=90.9
Q ss_pred CCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHH-HHH-hhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCc
Q 009671 247 LRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVG-LAA-ISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLR 324 (529)
Q Consensus 247 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~-~~~-l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 324 (529)
++-|.+.+|.--+......+...+..+++|++.+|.+++.. +.. +.++|.|+.|+++.+.--++. ..+.....+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccceE
Confidence 33444445443333344555666666777777776665532 222 345677777777655322221 12211135666
Q ss_pred EEEecCcccCccChHHHHHHHhcCccccceEeecc-----cCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 325 KLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGV-----NPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 325 ~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~-----~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
.|.|.|. .++-.....+...+|.+++|.++.| .++++..+. .-+.+++|.+.+|...-......+...+
T Consensus 125 ~lVLNgT---~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 125 VLVLNGT---GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred EEEEcCC---CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 6666552 3433344445555666666666655 222222221 1233445555444321122233333445
Q ss_pred CcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHH
Q 009671 400 VALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLR 447 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~ 447 (529)
|++..+-+..|++.+..-..-.+.+|.+..|+|....-=+-++++.|.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln 246 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN 246 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc
Confidence 555555555555554444433334455555555544422233444443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.17 E-value=1.2e-06 Score=78.55 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=77.1
Q ss_pred CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcC
Q 009671 294 CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNC 373 (529)
Q Consensus 294 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~ 373 (529)
...|+.++|+++. ++ .+..-..-.|.++.|+++.|....+.. ...+++|..|+|++|.++... -+...+
T Consensus 283 Wq~LtelDLS~N~-I~--~iDESvKL~Pkir~L~lS~N~i~~v~n------La~L~~L~~LDLS~N~Ls~~~--Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGNL-IT--QIDESVKLAPKLRRLILSQNRIRTVQN------LAELPQLQLLDLSGNLLAECV--GWHLKL 351 (490)
T ss_pred Hhhhhhccccccc-hh--hhhhhhhhccceeEEeccccceeeehh------hhhcccceEeecccchhHhhh--hhHhhh
Confidence 3456777777652 22 122222335788888888764322221 235678888888888766522 222456
Q ss_pred CCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHH-HHHHHhcCCCccEEEeccCC
Q 009671 374 QNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHG-MEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~-l~~l~~~~~~L~~L~l~~c~ 436 (529)
.++++|.++++..-+-.++. .+-+|..||+++|+|.... +..+. .+|.|+.+.+.+++
T Consensus 352 GNIKtL~La~N~iE~LSGL~----KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLSGLR----KLYSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred cCEeeeehhhhhHhhhhhhH----hhhhheeccccccchhhHHHhcccc-cccHHHHHhhcCCC
Confidence 77888888776311112222 2456888899998876533 34444 68889998888887
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.14 E-value=3.9e-07 Score=84.78 Aligned_cols=229 Identities=16% Similarity=0.067 Sum_probs=113.0
Q ss_pred hhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeec-cccChHHHHHhhcCCCCCeEEecC
Q 009671 226 VCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLER-IQVTDVGLAAISNCLDLEIMHLVK 304 (529)
Q Consensus 226 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~L~~ 304 (529)
+.|+.+......+..+..+++|+.|+|+... +.... +.-..++++|.+|.+.+ |.|++..-..+..+..|+.|.+.-
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccc-hhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 3333333444445667777888888887642 22111 11223445566665555 677777766666666666666643
Q ss_pred CCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeeccc-CcHHHHHHHH----------hcC
Q 009671 305 TPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVN-PTRVSLEVLA----------SNC 373 (529)
Q Consensus 305 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~l~~l~----------~~~ 373 (529)
+ .+ +.........+++|..|.+..+....+.... ......++.+.+..+. +.+-.+..++ ++.
T Consensus 150 n-~i-~Cir~~al~dL~~l~lLslyDn~~q~i~~~t----f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 150 N-HI-NCIRQDALRDLPSLSLLSLYDNKIQSICKGT----FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred h-hh-cchhHHHHHHhhhcchhcccchhhhhhcccc----ccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 3 11 1122233334567777776544322221111 1223456666665443 1111000000 000
Q ss_pred ----------------------CCCCEE--Ec-cCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCcc
Q 009671 374 ----------------------QNLERL--AL-CGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLV 428 (529)
Q Consensus 374 ----------------------~~L~~L--~l-~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 428 (529)
-.++.+ .+ +.|. .....-....+.+++|++|++++|.|+...-.++. ...+++
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~ 301 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE-GAAELQ 301 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCCCccchhhhhhhc-chhhhh
Confidence 001111 11 1111 11222223345688999999999998776655555 577888
Q ss_pred EEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccC
Q 009671 429 KVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQEN 475 (529)
Q Consensus 429 ~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~ 475 (529)
.|.|..+. +....-.++.. ...+..+++.+|+|+.-
T Consensus 302 eL~L~~N~-l~~v~~~~f~~----------ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 302 ELYLTRNK-LEFVSSGMFQG----------LSGLKTLSLYDNQITTV 337 (498)
T ss_pred hhhcCcch-HHHHHHHhhhc----------cccceeeeecCCeeEEE
Confidence 88888876 33222222211 12345566777777643
No 43
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.10 E-value=7.1e-06 Score=76.78 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=63.9
Q ss_pred hhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHH
Q 009671 291 ISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLA 370 (529)
Q Consensus 291 l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~ 370 (529)
++.+++|..|+++++. +.+...+ ......|+.|+++.+++..+.. .......|+.+-.+++++.......+
T Consensus 431 l~~l~kLt~L~L~NN~-Ln~LP~e--~~~lv~Lq~LnlS~NrFr~lP~-----~~y~lq~lEtllas~nqi~~vd~~~l- 501 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNL-LNDLPEE--MGSLVRLQTLNLSFNRFRMLPE-----CLYELQTLETLLASNNQIGSVDPSGL- 501 (565)
T ss_pred HHhhhcceeeecccch-hhhcchh--hhhhhhhheecccccccccchH-----HHhhHHHHHHHHhccccccccChHHh-
Confidence 3456666677766541 1111111 1123447777776654322221 11112234555555565554444444
Q ss_pred hcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCC
Q 009671 371 SNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVS 413 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~ 413 (529)
.++.+|.+|++.++. -..+..+..+|.+|++|++.+|++.
T Consensus 502 ~nm~nL~tLDL~nNd---lq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNND---LQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCc---hhhCChhhccccceeEEEecCCccC
Confidence 678899999997764 2346666778999999999999875
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.05 E-value=7e-06 Score=73.81 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=68.7
Q ss_pred CCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcc
Q 009671 271 TSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPN 350 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~ 350 (529)
..|+++++++|.|+...- .+.-.|+++.|+++.+. +...+ .+ ..+++|.+|+|++|... .+..+-..+-|
T Consensus 284 q~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~-i~~v~--nL-a~L~~L~~LDLS~N~Ls-----~~~Gwh~KLGN 353 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNR-IRTVQ--NL-AELPQLQLLDLSGNLLA-----ECVGWHLKLGN 353 (490)
T ss_pred hhhhhccccccchhhhhh-hhhhccceeEEeccccc-eeeeh--hh-hhcccceEeecccchhH-----hhhhhHhhhcC
Confidence 347777777775543321 12235777777777663 22211 12 22567777777775321 12223334567
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCCh-hHHHHHHHcCCcCCEEEeccCC
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGD-VEISCIAAKCVALKKLCIKSCP 411 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~ 411 (529)
+++|.|++|.+.+- .-+ ..+-+|..|++.++. +.. +.+..+. ++|.|+.|.+.+|+
T Consensus 354 IKtL~La~N~iE~L--SGL-~KLYSLvnLDl~~N~-Ie~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGL-RKLYSLVNLDLSSNQ-IEELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred EeeeehhhhhHhhh--hhh-Hhhhhheeccccccc-hhhHHHhcccc-cccHHHHHhhcCCC
Confidence 77777777766442 222 344567777776663 222 2233332 47778888888877
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.78 E-value=1e-05 Score=81.42 Aligned_cols=206 Identities=19% Similarity=0.102 Sum_probs=118.5
Q ss_pred HHHHHHhhcCCccEEEeeccccChHH-HHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHH
Q 009671 262 LLQLVTDRVTSLVEIHLERIQVTDVG-LAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEG 340 (529)
Q Consensus 262 ~l~~l~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~ 340 (529)
.++.+.+.+++++.|.+....-.+.. .-.|..+.+|++|.+.+|+--+..++..+-. .|++|.=.+ +-..
T Consensus 75 qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~------Sl~A 145 (1096)
T KOG1859|consen 75 QLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHN------SLDA 145 (1096)
T ss_pred HHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhc------cHHH
Confidence 34455566666666666543221111 2234567899999999985444455555543 455553211 1122
Q ss_pred HHHHHhc----------CccccceEeecccCc--HHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEec
Q 009671 341 LIAVAKC----------CPNLQELVLIGVNPT--RVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIK 408 (529)
Q Consensus 341 l~~~~~~----------~~~L~~L~L~~~~i~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~ 408 (529)
+..+... +..|...++++|.+. |+.+ +-++.|+.|+|+++. +++.. ....|++|++|||+
T Consensus 146 l~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL----qll~ale~LnLshNk-~~~v~---~Lr~l~~LkhLDls 217 (1096)
T KOG1859|consen 146 LRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL----QLLPALESLNLSHNK-FTKVD---NLRRLPKLKHLDLS 217 (1096)
T ss_pred HHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH----HHHHHhhhhccchhh-hhhhH---HHHhcccccccccc
Confidence 2222221 235666777777554 4444 345789999999885 44332 34468999999999
Q ss_pred cCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccCCccCCCcccccCc
Q 009671 409 SCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENGIEFPPQMVQPSV 488 (529)
Q Consensus 409 ~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~~~~pl~~l~l~~ 488 (529)
+|.+....-.... +|. |+.|++.++.--+-.|++.|. .+.+||+++|-+.+..
T Consensus 218 yN~L~~vp~l~~~-gc~-L~~L~lrnN~l~tL~gie~Lk-------------sL~~LDlsyNll~~hs------------ 270 (1096)
T KOG1859|consen 218 YNCLRHVPQLSMV-GCK-LQLLNLRNNALTTLRGIENLK-------------SLYGLDLSYNLLSEHS------------ 270 (1096)
T ss_pred cchhccccccchh-hhh-heeeeecccHHHhhhhHHhhh-------------hhhccchhHhhhhcch------------
Confidence 9975432211122 344 999999988733333555443 3667888888885543
Q ss_pred cccCCCchhHHHHHhhhhcccccccccccc
Q 009671 489 ASSRNTRSTSFKTRLGLLSGRSLVACTLRR 518 (529)
Q Consensus 489 c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 518 (529)
...++.-+.+|+.|+|..|.+-+
T Consensus 271 -------eL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 271 -------ELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -------hhhHHHHHHHHHHHhhcCCcccc
Confidence 33445555666666666665543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=6.4e-06 Score=82.75 Aligned_cols=200 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecc--ccChHHHHHhhc------CCCCCeEEecCCCCCChhhH
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI--QVTDVGLAAISN------CLDLEIMHLVKTPECTNLGL 313 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~l~~~~~~~l~~------~~~L~~L~L~~~~~~~~~~l 313 (529)
..+.+|++|.+.+|.--...++..+.. .|+.|.-.+. .+.+......+. ...|...+.+.+. -..+
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~---L~~m 179 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR---LVLM 179 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh---HHhH
Confidence 346788888888886444444444433 3454433221 111111111111 1234444443331 1122
Q ss_pred HHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 009671 314 AAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEIS 393 (529)
Q Consensus 314 ~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~ 393 (529)
..-.+-++.|+.|+|+.|. +.+.. ..+.|++|++|||++|.+....--.. ..|. |+.|.|.++..-+ +.
T Consensus 180 D~SLqll~ale~LnLshNk---~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~-~gc~-L~~L~lrnN~l~t---L~ 248 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNK---FTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSM-VGCK-LQLLNLRNNALTT---LR 248 (1096)
T ss_pred HHHHHHHHHhhhhccchhh---hhhhH---HHHhcccccccccccchhccccccch-hhhh-heeeeecccHHHh---hh
Confidence 2223335778999998764 33322 44578899999999887654332111 3454 8889988775222 22
Q ss_pred HHHHcCCcCCEEEeccCCCCHH-HHHHHHhcCCCccEEEeccCCC-----CCHHHHHHHHhcCCcEEEEeccC
Q 009671 394 CIAAKCVALKKLCIKSCPVSDH-GMEALAGGCPNLVKVKVKKCRA-----VTTEGADWLRARREYVVVNLDSG 460 (529)
Q Consensus 394 ~l~~~~~~L~~L~l~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~~-----i~~~~~~~l~~~~~~l~l~l~~~ 460 (529)
.+ .++.+|+.||+++|-+.+. .+..+. .+..|+.|+|.|++- -.....+++...--...+.+|+.
T Consensus 249 gi-e~LksL~~LDlsyNll~~hseL~pLw-sLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk 319 (1096)
T KOG1859|consen 249 GI-ENLKSLYGLDLSYNLLSEHSELEPLW-SLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGK 319 (1096)
T ss_pred hH-HhhhhhhccchhHhhhhcchhhhHHH-HHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecce
Confidence 22 2467899999998865442 233333 355688889988772 12345566554322234445543
No 47
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=4.5e-05 Score=64.95 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=69.0
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcccc
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQ 352 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~ 352 (529)
++.++-+++.|..+++..+..++.++.|.+.+|..+.+..+..+..-.++|+.|+|++| ..|++.++.-+. .+++|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC--~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC--PRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC--CeechhHHHHHH-HhhhhH
Confidence 67777777788888888888899999999999988888888888887789999999887 578888887665 477888
Q ss_pred ceEeecc
Q 009671 353 ELVLIGV 359 (529)
Q Consensus 353 ~L~L~~~ 359 (529)
.|.|.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8877654
No 48
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.54 E-value=1.3e-05 Score=80.37 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=136.6
Q ss_pred CCCeEeccccCCCc--hHHHHHHHhhcCCccEEEeeccccChHHHHHhhc----C-CCCCeEEecCCCCCChhhHHHHHH
Q 009671 246 NLRTLKLFRCSGDW--DKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISN----C-LDLEIMHLVKTPECTNLGLAAVAE 318 (529)
Q Consensus 246 ~L~~L~l~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~----~-~~L~~L~L~~~~~~~~~~l~~l~~ 318 (529)
.+.+|.+.+|.... ...+.......+.|+.|+++++.+.+.+...+.. . ..|+.|.+..| .++..+...+..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHH
Confidence 37888888875322 2233344456678999999999999988877753 2 45677888777 455555554443
Q ss_pred ---hCCCCcEEEecCcccCccChHHHHHHHh-------cCccccceEeecccCcHHHHHHHHhc---CCC-CCEEEccCC
Q 009671 319 ---RCKLLRKLHIDGWKANRIGDEGLIAVAK-------CCPNLQELVLIGVNPTRVSLEVLASN---CQN-LERLALCGS 384 (529)
Q Consensus 319 ---~~~~L~~L~L~~~~~~~i~~~~l~~~~~-------~~~~L~~L~L~~~~i~~~~l~~l~~~---~~~-L~~L~l~~~ 384 (529)
..+.++.+++..|. +.+.+...+.+ ...++++|.+.+|.++......+... .+. +..|++..+
T Consensus 167 ~L~~~~~l~~l~l~~n~---l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNG---LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHhcccchhHHHHHhcc---cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 35778888887764 33444433322 24578999999999887776555443 333 556788665
Q ss_pred CCCChhHHHHHHHcC----CcCCEEEeccCCCCHHHHHHHHh---cCCCccEEEeccCCCCCHHHHHHHHhc
Q 009671 385 DTVGDVEISCIAAKC----VALKKLCIKSCPVSDHGMEALAG---GCPNLVKVKVKKCRAVTTEGADWLRAR 449 (529)
Q Consensus 385 ~~~~~~~l~~l~~~~----~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~L~l~~c~~i~~~~~~~l~~~ 449 (529)
.+.|.++..+...+ +.+++++++.|.+++.+...+.+ .|++++.+.+...+ +.+.++..+.+.
T Consensus 244 -~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~ 313 (478)
T KOG4308|consen 244 -KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEA 313 (478)
T ss_pred -CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHH
Confidence 47787777776654 45699999999998887766654 46789999999888 888887777764
No 49
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.50 E-value=2.9e-05 Score=77.82 Aligned_cols=220 Identities=19% Similarity=0.205 Sum_probs=146.9
Q ss_pred cchhhccccccCCcc----hhhhhcCCCCCeEeccccCCCchHHHHHHHhhcC----CccEEEeeccccChHHHHHh---
Q 009671 223 LKTVCLKELYNGQCF----GPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVT----SLVEIHLERIQVTDVGLAAI--- 291 (529)
Q Consensus 223 L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~l~~~~~~~l--- 291 (529)
+..+.+.++...... ...+...+.|+.|+++++. +.+.....+....+ .++.|.+..|.++..+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 666677666544333 2345667899999999964 44666666555443 36778888888887776555
Q ss_pred -hcCCCCCeEEecCCCCCChhhHHHHHH-------hCCCCcEEEecCcccCccChHHHHHHH---hcCcc-ccceEeecc
Q 009671 292 -SNCLDLEIMHLVKTPECTNLGLAAVAE-------RCKLLRKLHIDGWKANRIGDEGLIAVA---KCCPN-LQELVLIGV 359 (529)
Q Consensus 292 -~~~~~L~~L~L~~~~~~~~~~l~~l~~-------~~~~L~~L~L~~~~~~~i~~~~l~~~~---~~~~~-L~~L~L~~~ 359 (529)
.....++.+++..|... ..+...+.. ...++++|.+++|. +++.....+. ...+. +.+|++..|
T Consensus 168 L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~---~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG---VTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC---cChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 34678888888877432 333333222 23578999998874 4444444433 33445 777999999
Q ss_pred cCcHHHHHHHHhcC----CCCCEEEccCCCCCChhHHHH---HHHcCCcCCEEEeccCCCCHHHHHHHHhc---CCCccE
Q 009671 360 NPTRVSLEVLASNC----QNLERLALCGSDTVGDVEISC---IAAKCVALKKLCIKSCPVSDHGMEALAGG---CPNLVK 429 (529)
Q Consensus 360 ~i~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~i~~~~l~~l~~~---~~~L~~ 429 (529)
.+.+.++..+...+ +.++++++..|. +++.+... ....|++++.|.++++++++.+...+.+. ...+..
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~ 322 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLH 322 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchh
Confidence 99998877765544 345899999886 66655444 44557899999999999999887776654 335666
Q ss_pred EEeccCCCCCHHHHHHHHh
Q 009671 430 VKVKKCRAVTTEGADWLRA 448 (529)
Q Consensus 430 L~l~~c~~i~~~~~~~l~~ 448 (529)
+-+.++...+..+...+..
T Consensus 323 ~~l~~~~~~~~~~~~~~~~ 341 (478)
T KOG4308|consen 323 LVLGGTGKGTRGGTSVLAE 341 (478)
T ss_pred hhccccCccchhHHHHHHH
Confidence 6777666666665554444
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.48 E-value=7.8e-05 Score=80.37 Aligned_cols=15 Identities=13% Similarity=0.115 Sum_probs=8.4
Q ss_pred HhcCCCCCEEecCCc
Q 009671 188 LDNCSTLEELSVKRL 202 (529)
Q Consensus 188 ~~~~~~L~~L~l~~~ 202 (529)
+..+|.|+.|+++++
T Consensus 567 f~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGN 581 (889)
T ss_pred HhhCcceEEEECCCC
Confidence 345566666666653
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.23 E-value=0.00012 Score=78.84 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=41.5
Q ss_pred HcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCc
Q 009671 138 QKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
..++.|++|-+.+....-...-..++..+|.|+.|||++|.- ...++...+.+-+|+.|++.+.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCC
Confidence 346788888887632101222234466799999999998751 1234555667788998888865
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.21 E-value=6.4e-05 Score=52.35 Aligned_cols=58 Identities=29% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCC
Q 009671 322 LLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGS 384 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 384 (529)
+|+.|++++|....+....+ ..+++|++|++++|.+.......+ ..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f----~~l~~L~~L~l~~N~l~~i~~~~f-~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSF----SNLPNLETLDLSNNNLTSIPPDAF-SNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTT----TTGTTESEEEETSSSESEEETTTT-TTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHH----cCCCCCCEeEccCCccCccCHHHH-cCCCCCCEEeCcCC
Confidence 44455554443333332221 234445555555444433222222 34444444444443
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.02 E-value=0.00074 Score=37.50 Aligned_cols=25 Identities=36% Similarity=0.735 Sum_probs=19.2
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHh
Q 009671 424 CPNLVKVKVKKCRAVTTEGADWLRA 448 (529)
Q Consensus 424 ~~~L~~L~l~~c~~i~~~~~~~l~~ 448 (529)
|++|++|+|.+|.+|+|.++..++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5678888888888888888777653
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.96 E-value=0.00018 Score=50.08 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=16.7
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
+|++|++++|.++......+..+++|++|+++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN 35 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC
Confidence 4555555555444444444444555555555543
No 55
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.95 E-value=2.1e-05 Score=64.86 Aligned_cols=88 Identities=19% Similarity=0.103 Sum_probs=40.3
Q ss_pred hhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHh
Q 009671 240 LIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAER 319 (529)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 319 (529)
-+..+|.|+.|++.+. ++.+..+..-.-.+..|+.|++.++.+.-. ...++++.+|+.|.+..+.-++ +..-...
T Consensus 97 gfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdndll~---lpkeig~ 171 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDNDLLS---LPKEIGD 171 (264)
T ss_pred ccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccCchhh---CcHHHHH
Confidence 3455677777777663 222222221111223355555555543322 1224556677777666543211 1111122
Q ss_pred CCCCcEEEecCcc
Q 009671 320 CKLLRKLHIDGWK 332 (529)
Q Consensus 320 ~~~L~~L~L~~~~ 332 (529)
+..|++|++.+++
T Consensus 172 lt~lrelhiqgnr 184 (264)
T KOG0617|consen 172 LTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHhcccce
Confidence 3456666666654
No 56
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.55 E-value=0.0027 Score=35.22 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=13.3
Q ss_pred CCCCCEEEccCCCCCChhHHHHHH
Q 009671 373 CQNLERLALCGSDTVGDVEISCIA 396 (529)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~l~~l~ 396 (529)
|++|++|+|++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 455555555555555555555544
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.00059 Score=61.17 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=37.9
Q ss_pred CCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCC
Q 009671 295 LDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQ 374 (529)
Q Consensus 295 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~ 374 (529)
.+.++|+..|| .+++.. +...++.|+.|.|+-|.+..+ . -+..|.+|++|.|..|.|.+..-.+.+.++|
T Consensus 19 ~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNkIssL-----~-pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNKISSL-----A-PLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHhhhhcccCC-CccHHH---HHHhcccceeEEeeccccccc-----h-hHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 34556666665 333332 233456666666654322111 1 1224556666666555555433222225555
Q ss_pred CCCEEEccCC
Q 009671 375 NLERLALCGS 384 (529)
Q Consensus 375 ~L~~L~l~~~ 384 (529)
+|+.|-|..+
T Consensus 89 sLr~LWL~EN 98 (388)
T KOG2123|consen 89 SLRTLWLDEN 98 (388)
T ss_pred hhhhHhhccC
Confidence 5555555443
No 58
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.51 E-value=5e-05 Score=62.75 Aligned_cols=187 Identities=15% Similarity=0.099 Sum_probs=90.6
Q ss_pred cCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCC
Q 009671 243 GAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKL 322 (529)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 322 (529)
.+.+++.|.++... ++. ....+ ..+.+|+.|++.++++++... .++.+++|+.|+++-+.- ..+..-...+|.
T Consensus 31 ~~s~ITrLtLSHNK-l~~-vppni-a~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl---~~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LTV-VPPNI-AELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRL---NILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhcccCc-eee-cCCcH-HHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhh---hcCccccCCCch
Confidence 34556666666532 110 00111 123457777777777766543 356677777777753310 011111123567
Q ss_pred CcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcC
Q 009671 323 LRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVAL 402 (529)
Q Consensus 323 L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 402 (529)
|+.|+|.++ ++++..+..-+-.+..|+.|.++.+.+.-.. ..+ ..+.+|+.|.+..+..++ +..-...+..|
T Consensus 104 levldltyn---nl~e~~lpgnff~m~tlralyl~dndfe~lp-~dv-g~lt~lqil~lrdndll~---lpkeig~lt~l 175 (264)
T KOG0617|consen 104 LEVLDLTYN---NLNENSLPGNFFYMTTLRALYLGDNDFEILP-PDV-GKLTNLQILSLRDNDLLS---LPKEIGDLTRL 175 (264)
T ss_pred hhhhhcccc---ccccccCCcchhHHHHHHHHHhcCCCcccCC-hhh-hhhcceeEEeeccCchhh---CcHHHHHHHHH
Confidence 777777664 2333322211112345666777666432111 111 566778888876664332 11222235678
Q ss_pred CEEEeccCCCCH--HHHHHHHhcCCCccEEEeccCCCCCHHHHHH
Q 009671 403 KKLCIKSCPVSD--HGMEALAGGCPNLVKVKVKKCRAVTTEGADW 445 (529)
Q Consensus 403 ~~L~l~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~ 445 (529)
++|.|.+|.++- ..+..+. ...+=+.+.+..++.++.-.-++
T Consensus 176 relhiqgnrl~vlppel~~l~-l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 176 RELHIQGNRLTVLPPELANLD-LVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred HHHhcccceeeecChhhhhhh-hhhhHHHHhhhhCCCCChHHHHH
Confidence 888888887331 1111111 11222344455666666544333
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00078 Score=60.42 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=73.7
Q ss_pred CCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCC
Q 009671 244 AKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLL 323 (529)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 323 (529)
+.+.+.|+..+|. +++. .+...++.|+.|.|+-|.|+. +..+.+|.+|+.|.|..+ .|.+.+-.....++|+|
T Consensus 18 l~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCC-ccHH---HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 3566777777774 3332 355677889999999887765 445678999999999876 44554444455678999
Q ss_pred cEEEecCcccCccC-hHHHHHHHhcCccccceEe
Q 009671 324 RKLHIDGWKANRIG-DEGLIAVAKCCPNLQELVL 356 (529)
Q Consensus 324 ~~L~L~~~~~~~i~-~~~l~~~~~~~~~L~~L~L 356 (529)
+.|.|..|+|-.-. ...-....+.+|+|++||=
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 99999887754333 3334456677899998863
No 60
>PLN03150 hypothetical protein; Provisional
Probab=96.35 E-value=0.0072 Score=63.74 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCC
Q 009671 297 LEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNL 376 (529)
Q Consensus 297 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L 376 (529)
++.|+|+++. +... +..-...+++|+.|+|++|..... +......+++|+.|+|++|.++......+ ..+++|
T Consensus 420 v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSL 492 (623)
T ss_pred EEEEECCCCC-cccc-CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCC
Confidence 5666666552 2211 111223467777777776543211 11123456777777777777665444444 567777
Q ss_pred CEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC
Q 009671 377 ERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP 411 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 411 (529)
+.|++++|. ++..--..+.....++..+++.+|.
T Consensus 493 ~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 493 RILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CEEECcCCc-ccccCChHHhhccccCceEEecCCc
Confidence 777777664 2211111122223455667777664
No 61
>PLN03150 hypothetical protein; Provisional
Probab=96.28 E-value=0.009 Score=63.02 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=53.8
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEE
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKV 430 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L 430 (529)
++.|+|+++.+.......+ ..+++|+.|+|+++. ++. .+......+++|+.|+|++|.++......+. .+++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~-l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNS-IRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCc-ccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEE
Confidence 6677777776654433344 567888888887764 221 1222234577888888888876654444454 57788888
Q ss_pred EeccCCCCC
Q 009671 431 KVKKCRAVT 439 (529)
Q Consensus 431 ~l~~c~~i~ 439 (529)
+|++|. ++
T Consensus 496 ~Ls~N~-l~ 503 (623)
T PLN03150 496 NLNGNS-LS 503 (623)
T ss_pred ECcCCc-cc
Confidence 888776 44
No 62
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.25 E-value=0.0036 Score=57.09 Aligned_cols=46 Identities=33% Similarity=0.399 Sum_probs=36.7
Q ss_pred CCCCcccCCCHHHHHHHHcc-----CChhhhhHHHHHhHHHHHhhc--cccee
Q 009671 46 TAYDYISNLPDECLACIFQS-----LSSGDRKRCSLVCRRWLRIEG--QSRHR 91 (529)
Q Consensus 46 ~~~~~~~~LP~eil~~If~~-----L~~~d~~~~~~Vck~W~~~~~--~~~~~ 91 (529)
+..+.|..||||||..||.. ++.+++.++++|||.|+..++ ..|+.
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 34456899999999999985 567999999999999998643 44544
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.24 E-value=0.0056 Score=39.00 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=20.1
Q ss_pred CcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCC
Q 009671 400 VALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVT 439 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 439 (529)
++|++|++++|.|++- ......+++|+.|++++|. ++
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N~-i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNNP-IS 37 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSSC-CS
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCCC-CC
Confidence 3566666666666642 2212356666666666665 44
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.14 E-value=0.0024 Score=58.59 Aligned_cols=46 Identities=33% Similarity=0.652 Sum_probs=39.8
Q ss_pred CCcccCCC----HHHHHHHHccCChhhhhHHHHHhHHHHHh--hcccceeee
Q 009671 48 YDYISNLP----DECLACIFQSLSSGDRKRCSLVCRRWLRI--EGQSRHRLS 93 (529)
Q Consensus 48 ~~~~~~LP----~eil~~If~~L~~~d~~~~~~Vck~W~~~--~~~~~~~~~ 93 (529)
.|++..|| ++|-..||+||+..+++.|-+|||+|+++ .+..|+.+.
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 58999999 99999999999999999999999999997 334565543
No 65
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.13 E-value=0.0047 Score=59.21 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=34.4
Q ss_pred CcccCCCHHHHHHHHccCC-hhhhhHHHHHhHHHHHhhc
Q 009671 49 DYISNLPDECLACIFQSLS-SGDRKRCSLVCRRWLRIEG 86 (529)
Q Consensus 49 ~~~~~LP~eil~~If~~L~-~~d~~~~~~Vck~W~~~~~ 86 (529)
..|.+||+|+|..|..+|+ ..|+.+++.|||.||..+.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 4689999999999999997 6799999999999999744
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.93 E-value=0.002 Score=57.49 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=35.4
Q ss_pred cCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccCh-HHHHHhhcCCCCCeEEecCC
Q 009671 243 GAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTD-VGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~L~~~ 305 (529)
.+|+|+.|.++....-....+..+...+|+|+.|++++|.+.+ ..+..+..+.+|..|++..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 3467777777664322333455566666777777777776654 12222334455555555555
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.79 E-value=0.007 Score=32.75 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=11.1
Q ss_pred CcCCEEEeccCCCCHHHHHHHH
Q 009671 400 VALKKLCIKSCPVSDHGMEALA 421 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~ 421 (529)
++|++|+|++|.|+++++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4555555555555555555543
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.66 E-value=0.035 Score=54.08 Aligned_cols=36 Identities=11% Similarity=0.274 Sum_probs=24.4
Q ss_pred cCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCC
Q 009671 165 NCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGI 205 (529)
Q Consensus 165 ~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 205 (529)
.|+++++|++++|.+.. ++ .--++|++|.+.+|..+
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP---~LP~sLtsL~Lsnc~nL 85 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP---VLPNELTEITIENCNNL 85 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC---CCCCCCcEEEccCCCCc
Confidence 47889999999886432 12 12236899998887654
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.61 E-value=0.004 Score=55.67 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=17.3
Q ss_pred CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCc
Q 009671 294 CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGW 331 (529)
Q Consensus 294 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 331 (529)
+++|++|.++.+..-...++..++..+|+|++|++++|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 44555555544422223334444444455555555544
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.53 E-value=0.017 Score=56.23 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=34.0
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecc-ccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-QVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERC 320 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 320 (529)
..|.++++|++++|. +.. +....++|++|.+.+| .++... ..+ .++|+.|.+++|..+. .+ .
T Consensus 49 ~~~~~l~~L~Is~c~-L~s-----LP~LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~-----sL---P 111 (426)
T PRK15386 49 EEARASGRLYIKDCD-IES-----LPVLPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEIS-----GL---P 111 (426)
T ss_pred HHhcCCCEEEeCCCC-Ccc-----cCCCCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccc-----cc---c
Confidence 345667777777662 211 1122234666666654 221111 011 2466677776664332 11 2
Q ss_pred CCCcEEEecC
Q 009671 321 KLLRKLHIDG 330 (529)
Q Consensus 321 ~~L~~L~L~~ 330 (529)
++|+.|.+.+
T Consensus 112 ~sLe~L~L~~ 121 (426)
T PRK15386 112 ESVRSLEIKG 121 (426)
T ss_pred cccceEEeCC
Confidence 4566666654
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.52 E-value=0.023 Score=36.16 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 271 TSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
++|++|++++|.+++... .++.+++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCC
Confidence 357777777777776443 2667777777777766
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.30 E-value=0.015 Score=58.02 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=15.5
Q ss_pred hcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 269 RVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 269 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
.+++|+.|++..|.+.+..... +..++|+.|+++++
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls~N 196 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGN 196 (394)
T ss_pred ccccccccccCCchhhhhhhhh-hhhhhhhheeccCC
Confidence 3444555555555444432211 12344444444443
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.78 E-value=0.023 Score=30.66 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=18.9
Q ss_pred CCCccEEEeccCCCCCHHHHHHHHh
Q 009671 424 CPNLVKVKVKKCRAVTTEGADWLRA 448 (529)
Q Consensus 424 ~~~L~~L~l~~c~~i~~~~~~~l~~ 448 (529)
+++|+.|+|++|. |+++++..+++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhCC
Confidence 5789999999999 99999998863
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.59 E-value=0.046 Score=30.82 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=17.2
Q ss_pred CcCCEEEeccCCCCHHHHHHHHhc
Q 009671 400 VALKKLCIKSCPVSDHGMEALAGG 423 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~~~ 423 (529)
++|++|+|++|.++++|...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 457777777777777777777653
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.58 E-value=0.012 Score=50.60 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=16.1
Q ss_pred cCccccceEeecccCcHHHHH--HHHhcCCCCCEEEccC
Q 009671 347 CCPNLQELVLIGVNPTRVSLE--VLASNCQNLERLALCG 383 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~--~l~~~~~~L~~L~l~~ 383 (529)
.||.|+.|.+-+|.++...-- .++..+|+|+.|++.+
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 345555555555444432210 1113445555555543
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.56 E-value=0.026 Score=56.31 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=58.8
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCK 321 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 321 (529)
..+++|+.|++.++.- . .+.......++|+.|+++++.+.+..... .....|++|.++++..+.. ........
T Consensus 160 ~~l~~L~~L~l~~N~l-~--~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~---~~~~~~~~ 232 (394)
T COG4886 160 RNLPNLKNLDLSFNDL-S--DLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIEL---LSSLSNLK 232 (394)
T ss_pred hccccccccccCCchh-h--hhhhhhhhhhhhhheeccCCccccCchhh-hhhhhhhhhhhcCCcceec---chhhhhcc
Confidence 4566677776666431 1 11111114556777777777665543321 2233466666665521111 11112234
Q ss_pred CCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCC
Q 009671 322 LLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGS 384 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 384 (529)
++..+.+.++....+ ......+++++.|+++++.+++... .....+|+.|++++.
T Consensus 233 ~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 233 NLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred cccccccCCceeeec-----cchhccccccceecccccccccccc---ccccCccCEEeccCc
Confidence 444444443321111 1222334556666666665554332 144455566665544
No 77
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.38 E-value=0.026 Score=48.50 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=19.4
Q ss_pred CCcCCEEEeccCCCCHHHHH--HHHhcCCCccEEEeccC
Q 009671 399 CVALKKLCIKSCPVSDHGME--ALAGGCPNLVKVKVKKC 435 (529)
Q Consensus 399 ~~~L~~L~l~~~~i~~~~l~--~l~~~~~~L~~L~l~~c 435 (529)
||+|+.|.+-+|++++..-. .+.-.+|+|+.|+..+-
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 56666666666665543211 11113566777666653
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.34 E-value=0.004 Score=62.37 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=57.3
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCK 321 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 321 (529)
..+.+|+.|++.+.. + ..+..+...+++|+.|++++|.|++. ..+..++.|+.|++.++. +... ..+ ..++
T Consensus 92 ~~~~~l~~l~l~~n~-i--~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~-i~~~--~~~-~~l~ 162 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNK-I--EKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNL-ISDI--SGL-ESLK 162 (414)
T ss_pred ccccceeeeeccccc-h--hhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCc-chhc--cCC-ccch
Confidence 445666666665532 1 11111134566777777777766552 233445567777777663 1111 111 1146
Q ss_pred CCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcH
Q 009671 322 LLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTR 363 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~ 363 (529)
.|+.++++++.+..+... . ...+.+++.+.+.++.+..
T Consensus 163 ~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhc
Confidence 677777776543222221 1 2456677777777775543
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.61 E-value=0.015 Score=46.66 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=25.6
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCc
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGW 331 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 331 (529)
|+..+|++|.+.+.......+++.++.|++.++ .+++...+ ++ .++.|+.|++..|
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~A-am~aLr~lNl~~N 110 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LA-AMPALRSLNLRFN 110 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-Hh-hhHHhhhcccccC
Confidence 455555555554444333334455555555544 23333322 22 2455555555544
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.43 E-value=0.025 Score=56.70 Aligned_cols=127 Identities=21% Similarity=0.216 Sum_probs=61.0
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccc
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNL 351 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L 351 (529)
.++.+.+..+.+.. ....+..+.+|+.|++.++. + ..+......+++|+.|+++++.+..+.. + ..++.|
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~-i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l----~~l~~L 142 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNK-I--EKIENLLSSLVNLQVLDLSFNKITKLEG--L----STLTLL 142 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccc-h--hhcccchhhhhcchheeccccccccccc--h----hhccch
Confidence 34444444444433 11224456667777776541 1 1222212335677777777654332221 1 123447
Q ss_pred cceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCC
Q 009671 352 QELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVS 413 (529)
Q Consensus 352 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~ 413 (529)
+.|++.+|.+.+..- + ..++.|+.++++++. +++..-.. ...+.+|+.+.+.++.+.
T Consensus 143 ~~L~l~~N~i~~~~~--~-~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 143 KELNLSGNLISDISG--L-ESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhheeccCcchhccC--C-ccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 777777776655321 1 225566666666553 22211101 234566666666666533
No 81
>PF13013 F-box-like_2: F-box-like domain
Probab=92.08 E-value=0.23 Score=38.60 Aligned_cols=30 Identities=30% Similarity=0.291 Sum_probs=27.4
Q ss_pred cccCCCHHHHHHHHccCChhhhhHHHHHhH
Q 009671 50 YISNLPDECLACIFQSLSSGDRKRCSLVCR 79 (529)
Q Consensus 50 ~~~~LP~eil~~If~~L~~~d~~~~~~Vck 79 (529)
.+.+||+||+..||.+.+..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999988888887
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.09 E-value=0.079 Score=42.71 Aligned_cols=60 Identities=23% Similarity=0.138 Sum_probs=31.9
Q ss_pred cCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC
Q 009671 347 CCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP 411 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 411 (529)
.+|.++.|++.+|.+.+...+ + ..+|.|+.|+++.+.... ..+.++. +.+|-.|+..++.
T Consensus 75 kf~t~t~lNl~~neisdvPeE-~-Aam~aLr~lNl~~N~l~~--~p~vi~~-L~~l~~Lds~~na 134 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEE-L-AAMPALRSLNLRFNPLNA--EPRVIAP-LIKLDMLDSPENA 134 (177)
T ss_pred ccchhhhhhcchhhhhhchHH-H-hhhHHhhhcccccCcccc--chHHHHH-HHhHHHhcCCCCc
Confidence 445666666666666665544 3 456666676666554211 1222332 4455555665554
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.06 E-value=0.43 Score=26.80 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=15.9
Q ss_pred CCCCEEEecCcccChHHHHHHHhc
Q 009671 167 KGLKKLSCGSCTFGAKGMNAVLDN 190 (529)
Q Consensus 167 ~~L~~L~L~~~~~~~~~l~~~~~~ 190 (529)
++|++|+|++|.+++.+...+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 457777777777777776665543
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.96 E-value=0.24 Score=50.88 Aligned_cols=40 Identities=30% Similarity=0.479 Sum_probs=37.2
Q ss_pred CCCCcccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhh
Q 009671 46 TAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIE 85 (529)
Q Consensus 46 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~ 85 (529)
...+.+..||.|+..+||.||+.+++..+++||+.|+.+.
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhh
Confidence 4569999999999999999999999999999999999973
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.71 E-value=0.47 Score=23.07 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=4.8
Q ss_pred cCCEEEeccCCC
Q 009671 401 ALKKLCIKSCPV 412 (529)
Q Consensus 401 ~L~~L~l~~~~i 412 (529)
+|+.|+|++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.64 E-value=1.6 Score=43.75 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=40.8
Q ss_pred cCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccC--CCCH-HHHHHHHhcCCCccEEEeccCCCCC-----HHHH
Q 009671 372 NCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSC--PVSD-HGMEALAGGCPNLVKVKVKKCRAVT-----TEGA 443 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~i~~-~~l~~l~~~~~~L~~L~l~~c~~i~-----~~~~ 443 (529)
+.|.+..++++++....-+.+..+++..|+|+.|+|++| .+.. ..+..+. ...|++|.+.|++-.+ .+-+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k--~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK--GLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc--CCCHHHeeecCCccccchhhhHHHH
Confidence 444444444444433333334444555555555555555 2222 1222221 3346666666655221 1245
Q ss_pred HHHHhcCCcEEEEeccCccc
Q 009671 444 DWLRARREYVVVNLDSGEAE 463 (529)
Q Consensus 444 ~~l~~~~~~l~l~l~~~~~~ 463 (529)
..+.+.+|.+.. +|+..+.
T Consensus 294 ~~i~~~FPKL~~-LDG~ev~ 312 (585)
T KOG3763|consen 294 SAIRELFPKLLR-LDGVEVQ 312 (585)
T ss_pred HHHHHhcchhee-ecCcccC
Confidence 555566666644 5554443
No 87
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=85.78 E-value=0.62 Score=35.72 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=24.2
Q ss_pred CCcccCCCHHHHHHHHccCChhhhhHH
Q 009671 48 YDYISNLPDECLACIFQSLSSGDRKRC 74 (529)
Q Consensus 48 ~~~~~~LP~eil~~If~~L~~~d~~~~ 74 (529)
...|..||.||..+|+++|+..|+..+
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 478999999999999999999998654
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.63 E-value=1.4 Score=44.32 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=42.9
Q ss_pred CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccC-hHHHHHHHhcCccccceEeecccCcH------HHH
Q 009671 294 CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIG-DEGLIAVAKCCPNLQELVLIGVNPTR------VSL 366 (529)
Q Consensus 294 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~-~~~l~~~~~~~~~L~~L~L~~~~i~~------~~l 366 (529)
.+.+..++|+++.-..-..+..+....|+|+.|+|+++. ..+. +..+..+ ....|++|-+.||.+.. +.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~-~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNH-SKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccch-hhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHH
Confidence 566666666665433444555566666777777776642 1121 1122211 23456666666664432 223
Q ss_pred HHHHhcCCCCCEEE
Q 009671 367 EVLASNCQNLERLA 380 (529)
Q Consensus 367 ~~l~~~~~~L~~L~ 380 (529)
.++-+.+|+|..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 44445556665554
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=76.32 E-value=0.64 Score=46.77 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=43.8
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcccc
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQ 352 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~ 352 (529)
|+.|.+++|+++..... ++..+.|..|+.+.|.- ..+..-...+.+|+.|.+..++...+..+ +. +-.|.
T Consensus 145 Lkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~nei---~slpsql~~l~slr~l~vrRn~l~~lp~E----l~--~LpLi 214 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNEI---QSLPSQLGYLTSLRDLNVRRNHLEDLPEE----LC--SLPLI 214 (722)
T ss_pred ceeEEEecCccccCCcc-cccchhHHHhhhhhhhh---hhchHHhhhHHHHHHHHHhhhhhhhCCHH----Hh--CCcee
Confidence 66666666655433221 23445555666555421 11111111233445554443322222111 11 22355
Q ss_pred ceEeecccCcHHHHHHHHhcCCCCCEEEccCCC
Q 009671 353 ELVLIGVNPTRVSLEVLASNCQNLERLALCGSD 385 (529)
Q Consensus 353 ~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 385 (529)
.||+++|++....+.. .++..|++|-|.+++
T Consensus 215 ~lDfScNkis~iPv~f--r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 215 RLDFSCNKISYLPVDF--RKMRHLQVLQLENNP 245 (722)
T ss_pred eeecccCceeecchhh--hhhhhheeeeeccCC
Confidence 5666666555433322 455556666665543
No 90
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=66.15 E-value=9.6 Score=35.96 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=39.6
Q ss_pred CCCCeEEecCCCCCChhhHHHHHHh---CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHh
Q 009671 295 LDLEIMHLVKTPECTNLGLAAVAER---CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLAS 371 (529)
Q Consensus 295 ~~L~~L~L~~~~~~~~~~l~~l~~~---~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~ 371 (529)
+.|+..++.+...++...+..+... ....+.+.+.+-+....-..++..+.+.++.|++|++.++.|+..++-++..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 3444444444444444444443332 2344555554432222223344445555677777777777777776666544
Q ss_pred cC
Q 009671 372 NC 373 (529)
Q Consensus 372 ~~ 373 (529)
.+
T Consensus 278 al 279 (353)
T KOG3735|consen 278 AL 279 (353)
T ss_pred HH
Confidence 44
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=66.08 E-value=4.3 Score=32.67 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=2.5
Q ss_pred CCCeEEec
Q 009671 296 DLEIMHLV 303 (529)
Q Consensus 296 ~L~~L~L~ 303 (529)
+|+.+.+.
T Consensus 104 ~l~~i~~~ 111 (129)
T PF13306_consen 104 NLKEINIP 111 (129)
T ss_dssp T--EEE-T
T ss_pred CceEEEEC
Confidence 55555543
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=61.80 E-value=3.4 Score=33.30 Aligned_cols=56 Identities=25% Similarity=0.500 Sum_probs=20.6
Q ss_pred cCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecC
Q 009671 270 VTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDG 330 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 330 (529)
+++|+.+.+.. .+...+...+..+++|+.+.+... +...+...+ ..+ +|+.+.+..
T Consensus 57 ~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f-~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 57 CKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSF-SNC-NLKEINIPS 112 (129)
T ss_dssp -TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTT-TT--T--EEE-TT
T ss_pred ccccccccccc-cccccccccccccccccccccCcc--ccEEchhhh-cCC-CceEEEECC
Confidence 33455555533 222222223445677777777432 222221122 234 777777754
No 93
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=57.04 E-value=11 Score=20.73 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=13.8
Q ss_pred CCEEEecCcccCh-HHHHHHHhcCC
Q 009671 169 LKKLSCGSCTFGA-KGMNAVLDNCS 192 (529)
Q Consensus 169 L~~L~L~~~~~~~-~~l~~~~~~~~ 192 (529)
|+.|.|....+.+ ..+..++..||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 5666666666533 35666655554
No 94
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=55.67 E-value=4.1 Score=21.17 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.6
Q ss_pred hhccccccccccccccCC
Q 009671 505 LLSGRSLVACTLRRWSSG 522 (529)
Q Consensus 505 ~l~~l~l~~~~~~~~~~~ 522 (529)
+|+.|+|++|.+...|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 467889999998888775
No 95
>PHA03100 ankyrin repeat protein; Provisional
Probab=48.20 E-value=14 Score=37.92 Aligned_cols=30 Identities=30% Similarity=0.169 Sum_probs=25.6
Q ss_pred CCcccCCCHHHHHHHHccCChhhhhHHHHH
Q 009671 48 YDYISNLPDECLACIFQSLSSGDRKRCSLV 77 (529)
Q Consensus 48 ~~~~~~LP~eil~~If~~L~~~d~~~~~~V 77 (529)
...|..||.||..+|++||+..|+..+..-
T Consensus 445 ~~~w~~lP~Eik~~Il~~l~~~dl~~~~~~ 474 (480)
T PHA03100 445 NTYWNILPIEIKYKILEYLSNRDLKSLIEN 474 (480)
T ss_pred CCchhhCcHHHHHHHHHhCCHHHHHHHHhh
Confidence 358999999999999999999999765543
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=48.01 E-value=21 Score=19.24 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=7.1
Q ss_pred CCcEEEecCcccCcc
Q 009671 322 LLRKLHIDGWKANRI 336 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i 336 (529)
+|+.|+|++|....+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 455555555443333
No 97
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=48.01 E-value=21 Score=19.24 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=7.1
Q ss_pred CCcEEEecCcccCcc
Q 009671 322 LLRKLHIDGWKANRI 336 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i 336 (529)
+|+.|+|++|....+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 455555555443333
No 98
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.86 E-value=12 Score=37.56 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=24.0
Q ss_pred CCcccCCCHHHHHHHHccCChhhhhHH
Q 009671 48 YDYISNLPDECLACIFQSLSSGDRKRC 74 (529)
Q Consensus 48 ~~~~~~LP~eil~~If~~L~~~d~~~~ 74 (529)
...|..||.||..+|+++|+.+|+...
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~~~dL~~~ 410 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIGNKDIDIA 410 (413)
T ss_pred ccchhcCcHHHHHHHHHHhccchhhhh
Confidence 578999999999999999999998654
No 99
>PHA02989 ankyrin repeat protein; Provisional
Probab=45.26 E-value=19 Score=37.03 Aligned_cols=30 Identities=27% Similarity=0.197 Sum_probs=26.0
Q ss_pred CCcccCCCHHHHHHHHccCChhhhhHHHHH
Q 009671 48 YDYISNLPDECLACIFQSLSSGDRKRCSLV 77 (529)
Q Consensus 48 ~~~~~~LP~eil~~If~~L~~~d~~~~~~V 77 (529)
...|..||.||...|+++|+..|+.....=
T Consensus 456 ~~~w~~LP~Eik~~Il~~L~~~dl~~i~~~ 485 (494)
T PHA02989 456 KNYWMYLPIEIQINILEYLTFSDFKTILKF 485 (494)
T ss_pred ccHHHhCCHHHHHHHHHcCCHHHHHHHHhh
Confidence 478999999999999999999998765543
No 100
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=44.72 E-value=20 Score=19.74 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=9.8
Q ss_pred CcCCEEEeccCCCC
Q 009671 400 VALKKLCIKSCPVS 413 (529)
Q Consensus 400 ~~L~~L~l~~~~i~ 413 (529)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777763
No 101
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=42.18 E-value=6.5 Score=39.94 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=14.4
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
|..|+++.|++....+. +.++..|++|.|.++
T Consensus 213 Li~lDfScNkis~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeecccCceeecchh-hhhhhhheeeeeccC
Confidence 44555555544433322 233445555555444
No 102
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=41.54 E-value=65 Score=30.66 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=61.1
Q ss_pred hHHHHHHHhcCccccceEeecc-cCcHHHHHHHHh---cCCCCCEEEccCCCCCCh---hHHHHHHHcCCcCCEEEeccC
Q 009671 338 DEGLIAVAKCCPNLQELVLIGV-NPTRVSLEVLAS---NCQNLERLALCGSDTVGD---VEISCIAAKCVALKKLCIKSC 410 (529)
Q Consensus 338 ~~~l~~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~---~~~~L~~L~l~~~~~~~~---~~l~~l~~~~~~L~~L~l~~~ 410 (529)
+..+..+-..-+.|+..++.+. +|....+..+.. .-...+.+.+.+.. .+| -.+..+...++.|+.|++.+|
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr-~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTR-SSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhccc-CCchhHHHHHHHHhhcchhhheecccc
Confidence 3445555555589999999876 566555555443 34556666665543 222 234455566889999999999
Q ss_pred CCCHHHHHHHHhcCC---CccEEEe
Q 009671 411 PVSDHGMEALAGGCP---NLVKVKV 432 (529)
Q Consensus 411 ~i~~~~l~~l~~~~~---~L~~L~l 432 (529)
.|+..|+.++...+. .|..+.+
T Consensus 266 FItg~gi~a~~~al~~n~tl~el~~ 290 (353)
T KOG3735|consen 266 FITGLGIMALLRALQSNKSLTELKN 290 (353)
T ss_pred ccccHHHHHHHHHHhccchhhHhhh
Confidence 999999888876544 4444443
No 103
>PHA02878 ankyrin repeat protein; Provisional
Probab=40.21 E-value=19 Score=36.98 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=24.2
Q ss_pred CCcccCCCHHHHHHHHccCChhhhhHH
Q 009671 48 YDYISNLPDECLACIFQSLSSGDRKRC 74 (529)
Q Consensus 48 ~~~~~~LP~eil~~If~~L~~~d~~~~ 74 (529)
...|..||.||-.+|+++|+-.|+..+
T Consensus 444 ~~~w~~lP~Eik~~Il~~l~~~dl~~~ 470 (477)
T PHA02878 444 NYMWNRLPLEIKHYIMELLDDASLCNM 470 (477)
T ss_pred cCcHhhCCHHHHHHHHHHcCcHHHHHH
Confidence 468999999999999999999998654
No 104
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=38.87 E-value=17 Score=28.99 Aligned_cols=7 Identities=29% Similarity=0.923 Sum_probs=2.6
Q ss_pred cCCCCCE
Q 009671 372 NCQNLER 378 (529)
Q Consensus 372 ~~~~L~~ 378 (529)
.|+.|..
T Consensus 59 ~~~~l~~ 65 (120)
T PF03382_consen 59 GCSSLNQ 65 (120)
T ss_pred hhhhcCC
Confidence 3333333
No 105
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=36.99 E-value=52 Score=31.36 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=31.6
Q ss_pred CcccCCCHHHHHHHHccCCh--------hhhhHHHHHhHHHHHhh
Q 009671 49 DYISNLPDECLACIFQSLSS--------GDRKRCSLVCRRWLRIE 85 (529)
Q Consensus 49 ~~~~~LP~eil~~If~~L~~--------~d~~~~~~Vck~W~~~~ 85 (529)
..|..||.|.|..|+..... +..+.++-||+.|+.+.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 78999999999999998862 24578999999999964
No 106
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=35.59 E-value=31 Score=31.47 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=30.5
Q ss_pred CCCcccCCCHHHHHHHHccCC-hhhhhHHHHHhHHHHHh
Q 009671 47 AYDYISNLPDECLACIFQSLS-SGDRKRCSLVCRRWLRI 84 (529)
Q Consensus 47 ~~~~~~~LP~eil~~If~~L~-~~d~~~~~~Vck~W~~~ 84 (529)
....+.+||.|++..|+..++ .+|+..+++|--.-..+
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l 236 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKL 236 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHH
Confidence 346788999999999999998 78998888876555443
No 107
>PHA02798 ankyrin-like protein; Provisional
Probab=33.15 E-value=32 Score=35.41 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCcccCCCHHHHHHHHccCChhhhhH
Q 009671 47 AYDYISNLPDECLACIFQSLSSGDRKR 73 (529)
Q Consensus 47 ~~~~~~~LP~eil~~If~~L~~~d~~~ 73 (529)
....|..||.||-.+|+++|+..|+..
T Consensus 460 ~~~~w~~lP~Eik~~Il~~L~~~dl~~ 486 (489)
T PHA02798 460 ELSYWNYIPNEIKFKIINNLSNNDILE 486 (489)
T ss_pred CcchhhhCCHHHHHHHHHcCChHHHHH
Confidence 347899999999999999999888753
No 108
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=29.80 E-value=24 Score=19.40 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=15.3
Q ss_pred hhccccccccccccccC
Q 009671 505 LLSGRSLVACTLRRWSS 521 (529)
Q Consensus 505 ~l~~l~l~~~~~~~~~~ 521 (529)
.|..|+++++.++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57889999999999997
No 109
>PHA03095 ankyrin-like protein; Provisional
Probab=20.70 E-value=73 Score=32.41 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHHccCChhhhhHHH
Q 009671 52 SNLPDECLACIFQSLSSGDRKRCS 75 (529)
Q Consensus 52 ~~LP~eil~~If~~L~~~d~~~~~ 75 (529)
..||.||..+|++||+..|+..+.
T Consensus 443 ~~lP~Ei~~~Il~~l~~~dl~~~~ 466 (471)
T PHA03095 443 CALPPEIVMRILDFLPDDDLRNLL 466 (471)
T ss_pred CCCCHHHHHHHHHhCCHHHHHHHh
Confidence 789999999999999999986543
Done!