Query 009671
Match_columns 529
No_of_seqs 379 out of 3389
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 2.1E-39 7.2E-44 340.4 32.6 427 48-491 3-518 (594)
2 3ogk_B Coronatine-insensitive 100.0 2.7E-36 9.3E-41 316.5 37.6 404 51-476 13-529 (592)
3 2p1m_B Transport inhibitor res 100.0 6.3E-29 2.1E-33 260.7 25.6 338 104-455 97-535 (594)
4 3ogk_B Coronatine-insensitive 100.0 2.3E-28 7.8E-33 256.3 26.4 384 114-518 75-527 (592)
5 2ast_B S-phase kinase-associat 100.0 6.8E-28 2.3E-32 234.0 21.8 291 47-384 5-303 (336)
6 1z7x_W Ribonuclease inhibitor; 100.0 7.5E-27 2.6E-31 237.0 26.5 388 112-517 3-440 (461)
7 1z7x_W Ribonuclease inhibitor; 99.9 2.1E-26 7.1E-31 233.7 25.6 354 104-476 20-414 (461)
8 2ast_B S-phase kinase-associat 99.9 8.2E-21 2.8E-25 184.1 21.8 287 126-455 10-300 (336)
9 2z81_A CD282 antigen, TOLL-lik 99.9 8.8E-22 3E-26 204.2 11.7 168 105-285 43-210 (549)
10 4fmz_A Internalin; leucine ric 99.8 1.8E-20 6.1E-25 182.5 18.1 284 110-440 42-325 (347)
11 4fmz_A Internalin; leucine ric 99.8 5.8E-20 2E-24 178.9 19.5 284 139-474 42-325 (347)
12 1o6v_A Internalin A; bacterial 99.8 4.3E-20 1.5E-24 187.1 17.9 38 481-521 355-392 (466)
13 2ca6_A RAN GTPase-activating p 99.8 2.3E-19 7.7E-24 177.3 22.5 203 242-451 91-330 (386)
14 2ca6_A RAN GTPase-activating p 99.8 3.3E-19 1.1E-23 176.1 21.8 266 138-435 29-340 (386)
15 2z81_A CD282 antigen, TOLL-lik 99.8 4.7E-20 1.6E-24 191.2 11.7 385 112-522 26-491 (549)
16 3rgz_A Protein brassinosteroid 99.8 4.1E-22 1.4E-26 214.2 -4.8 382 108-517 96-527 (768)
17 3t6q_A CD180 antigen; protein- 99.8 3.7E-22 1.3E-26 209.6 -5.2 138 105-255 50-189 (606)
18 1o6v_A Internalin A; bacterial 99.8 5.3E-19 1.8E-23 179.1 17.2 320 108-490 64-386 (466)
19 3t6q_A CD180 antigen; protein- 99.8 2.7E-21 9.3E-26 203.0 0.1 206 222-436 255-460 (606)
20 2z7x_B TOLL-like receptor 1, v 99.8 6.6E-21 2.2E-25 196.2 2.8 159 271-439 247-412 (520)
21 3rgz_A Protein brassinosteroid 99.8 9.4E-22 3.2E-26 211.4 -5.1 383 107-517 121-551 (768)
22 3vq2_A TLR4, TOLL-like recepto 99.8 1.3E-20 4.5E-25 197.8 -0.8 61 461-522 474-539 (606)
23 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-20 4.6E-25 204.6 -1.5 114 399-523 400-523 (844)
24 3goz_A Leucine-rich repeat-con 99.8 2.6E-17 8.9E-22 160.8 18.7 264 147-441 4-299 (362)
25 1ziw_A TOLL-like receptor 3; i 99.7 3.2E-19 1.1E-23 189.8 4.4 281 140-436 48-364 (680)
26 3j0a_A TOLL-like receptor 5; m 99.7 8.2E-20 2.8E-24 198.4 -0.8 381 111-519 23-466 (844)
27 3v47_A TOLL-like receptor 5B a 99.7 1.4E-19 4.9E-24 183.0 0.3 285 140-439 78-384 (455)
28 2z63_A TOLL-like receptor 4, v 99.7 1.3E-19 4.6E-24 188.7 -0.3 86 347-436 345-432 (570)
29 3v47_A TOLL-like receptor 5B a 99.7 8.8E-19 3E-23 177.2 4.3 329 140-495 29-411 (455)
30 2id5_A Lingo-1, leucine rich r 99.7 3.7E-19 1.3E-23 181.0 1.0 312 112-448 32-343 (477)
31 3goz_A Leucine-rich repeat-con 99.7 1.8E-16 6E-21 154.9 19.9 253 136-416 17-300 (362)
32 1ziw_A TOLL-like receptor 3; i 99.7 1.4E-18 4.7E-23 184.9 5.2 280 219-518 327-623 (680)
33 3vq2_A TLR4, TOLL-like recepto 99.7 1.1E-18 3.7E-23 183.2 3.3 32 168-199 205-236 (606)
34 2z7x_B TOLL-like receptor 1, v 99.7 1.1E-17 3.9E-22 172.0 10.8 376 112-522 21-462 (520)
35 2z63_A TOLL-like receptor 4, v 99.7 4.8E-20 1.6E-24 192.1 -7.1 180 240-436 277-456 (570)
36 4eco_A Uncharacterized protein 99.7 1.7E-19 5.9E-24 189.4 -3.7 350 104-491 198-599 (636)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.4E-18 1.2E-22 177.5 5.9 37 166-202 120-156 (562)
38 3bz5_A Internalin-J, INLJ; leu 99.7 1.1E-17 3.6E-22 168.3 8.8 248 110-411 40-297 (457)
39 4ecn_A Leucine-rich repeat pro 99.7 1.2E-18 4.2E-23 186.4 2.1 350 104-492 440-840 (876)
40 3o6n_A APL1; leucine-rich repe 99.7 1.5E-17 5.3E-22 164.4 7.0 310 140-495 44-355 (390)
41 4eco_A Uncharacterized protein 99.7 9.3E-19 3.2E-23 183.8 -2.3 333 104-474 239-601 (636)
42 4ecn_A Leucine-rich repeat pro 99.7 3E-18 1E-22 183.4 1.5 333 104-475 481-842 (876)
43 2id5_A Lingo-1, leucine rich r 99.7 1.1E-17 3.6E-22 170.2 4.5 278 140-439 31-309 (477)
44 3o6n_A APL1; leucine-rich repe 99.7 1.8E-17 6E-22 163.9 5.8 301 111-447 44-360 (390)
45 3oja_B Anopheles plasmodium-re 99.6 3.5E-16 1.2E-20 163.2 9.5 310 140-495 50-361 (597)
46 3bz5_A Internalin-J, INLJ; leu 99.6 2.5E-15 8.6E-20 151.0 13.0 203 140-385 41-244 (457)
47 3oja_B Anopheles plasmodium-re 99.6 3.3E-16 1.1E-20 163.5 6.5 275 139-444 73-363 (597)
48 3o53_A Protein LRIM1, AGAP0063 99.6 5.2E-17 1.8E-21 155.6 -0.8 247 133-435 26-272 (317)
49 1xku_A Decorin; proteoglycan, 99.6 1.9E-16 6.4E-21 152.8 1.9 59 141-202 52-110 (330)
50 3e4g_A ATP synthase subunit S, 99.6 3.3E-15 1.1E-19 126.4 8.6 108 349-458 61-174 (176)
51 1xku_A Decorin; proteoglycan, 99.6 3.9E-16 1.3E-20 150.6 3.2 245 142-440 32-277 (330)
52 3un9_A NLR family member X1; l 99.6 3.2E-14 1.1E-18 138.5 15.5 173 270-448 71-261 (372)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2E-15 6.8E-20 156.6 6.4 157 269-438 351-510 (562)
54 2z80_A TOLL-like receptor 2, v 99.6 5.4E-15 1.8E-19 144.0 8.7 65 372-438 247-314 (353)
55 1jl5_A Outer protein YOPM; leu 99.5 1.5E-14 5.1E-19 145.2 11.8 162 320-521 236-413 (454)
56 2ft3_A Biglycan; proteoglycan, 99.5 1.3E-16 4.3E-21 154.1 -3.7 272 141-436 54-331 (332)
57 1jl5_A Outer protein YOPM; leu 99.5 2.8E-14 9.5E-19 143.2 11.7 281 112-474 91-371 (454)
58 3un9_A NLR family member X1; l 99.5 2.5E-13 8.5E-18 132.2 17.6 194 244-444 71-288 (372)
59 2z80_A TOLL-like receptor 2, v 99.5 1.8E-14 6.1E-19 140.2 8.8 281 139-474 29-315 (353)
60 2ft3_A Biglycan; proteoglycan, 99.5 1.9E-15 6.5E-20 145.8 -0.7 244 142-440 34-278 (332)
61 3oja_A Leucine-rich immune mol 99.5 1.1E-15 3.7E-20 155.0 -2.8 238 139-432 32-269 (487)
62 3zyj_A Leucine-rich repeat-con 99.5 5.6E-15 1.9E-19 148.3 2.3 229 167-438 64-292 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.5 6.3E-15 2.1E-19 141.1 2.4 248 102-410 24-272 (317)
64 3zyi_A Leucine-rich repeat-con 99.5 4.2E-15 1.4E-19 149.8 1.2 228 167-437 75-302 (452)
65 4fcg_A Uncharacterized protein 99.5 8E-15 2.8E-19 140.8 1.4 225 139-435 79-311 (328)
66 1ozn_A Reticulon 4 receptor; N 99.5 5.8E-15 2E-19 139.1 0.2 185 241-437 52-237 (285)
67 1ogq_A PGIP-2, polygalacturona 99.5 3.8E-16 1.3E-20 149.2 -8.4 60 141-202 50-111 (313)
68 2z66_A Variable lymphocyte rec 99.4 1.1E-15 3.6E-20 145.9 -5.8 110 320-436 149-259 (306)
69 3g06_A SSPH2 (leucine-rich rep 99.4 5.4E-13 1.8E-17 138.2 12.8 246 141-448 61-306 (622)
70 1ogq_A PGIP-2, polygalacturona 99.4 1.1E-15 3.9E-20 145.9 -7.5 84 112-202 50-135 (313)
71 2z66_A Variable lymphocyte rec 99.4 1.1E-14 3.7E-19 138.8 -0.8 134 271-412 126-260 (306)
72 4glp_A Monocyte differentiatio 99.4 4E-14 1.4E-18 135.1 3.0 161 269-440 143-308 (310)
73 1h6u_A Internalin H; cell adhe 99.4 9.1E-13 3.1E-17 125.3 12.3 171 242-439 60-230 (308)
74 3zyj_A Leucine-rich repeat-con 99.4 4.7E-14 1.6E-18 141.6 2.4 108 141-256 64-171 (440)
75 1ozn_A Reticulon 4 receptor; N 99.4 1.2E-13 4.1E-18 130.1 4.9 132 271-411 105-236 (285)
76 3zyi_A Leucine-rich repeat-con 99.4 8.2E-14 2.8E-18 140.3 3.5 227 141-411 75-301 (452)
77 3oja_A Leucine-rich immune mol 99.4 4.3E-14 1.5E-18 143.3 0.9 240 107-407 29-269 (487)
78 4glp_A Monocyte differentiatio 99.4 6E-14 2.1E-18 133.8 1.8 114 292-415 194-309 (310)
79 1wwl_A Monocyte differentiatio 99.4 1.3E-13 4.4E-18 131.6 3.9 188 242-439 118-309 (312)
80 4fcg_A Uncharacterized protein 99.4 7.3E-14 2.5E-18 134.1 1.3 185 110-331 79-263 (328)
81 4g8a_A TOLL-like receptor 4; l 99.4 2E-14 6.9E-19 151.5 -3.1 117 371-500 466-588 (635)
82 1h6u_A Internalin H; cell adhe 99.4 5.2E-12 1.8E-16 120.1 13.6 187 141-384 41-227 (308)
83 3g06_A SSPH2 (leucine-rich rep 99.4 8.1E-12 2.8E-16 129.4 15.5 245 112-421 61-305 (622)
84 1wwl_A Monocyte differentiatio 99.3 2E-13 6.9E-18 130.2 1.5 133 270-414 172-310 (312)
85 4ezg_A Putative uncharacterize 99.3 5.4E-12 1.8E-16 111.6 7.9 153 269-439 42-194 (197)
86 4g8a_A TOLL-like receptor 4; l 99.2 7.8E-13 2.7E-17 139.3 0.7 132 112-256 52-184 (635)
87 3e4g_A ATP synthase subunit S, 99.2 3E-11 1E-15 102.2 8.9 105 273-403 63-170 (176)
88 2ra8_A Uncharacterized protein 99.2 1.5E-10 5.1E-15 111.6 14.7 149 292-450 169-331 (362)
89 2ra8_A Uncharacterized protein 99.2 6.6E-11 2.3E-15 114.1 11.7 187 242-436 136-341 (362)
90 2o6q_A Variable lymphocyte rec 99.2 6.3E-12 2.1E-16 117.2 3.9 85 348-436 132-216 (270)
91 2z62_A TOLL-like receptor 4, v 99.2 4.5E-12 1.6E-16 118.6 2.8 35 167-202 28-62 (276)
92 2z62_A TOLL-like receptor 4, v 99.2 6.2E-12 2.1E-16 117.7 3.1 209 141-413 28-237 (276)
93 1h6t_A Internalin B; cell adhe 99.2 5.4E-11 1.8E-15 112.0 9.2 172 242-440 43-214 (291)
94 3rfs_A Internalin B, repeat mo 99.2 3.2E-12 1.1E-16 119.3 0.8 78 347-435 155-232 (272)
95 2o6q_A Variable lymphocyte rec 99.2 2.6E-11 9.1E-16 112.9 6.2 133 271-412 85-217 (270)
96 4ezg_A Putative uncharacterize 99.1 7.2E-11 2.5E-15 104.2 8.3 152 166-362 43-194 (197)
97 3rfs_A Internalin B, repeat mo 99.1 5.1E-11 1.7E-15 111.1 6.3 61 320-385 156-216 (272)
98 1p9a_G Platelet glycoprotein I 99.1 2.7E-11 9.2E-16 113.9 3.5 110 320-438 99-208 (290)
99 2xwt_C Thyrotropin receptor; s 99.1 3.3E-12 1.1E-16 116.8 -2.7 181 240-436 50-237 (239)
100 1m9s_A Internalin B; cell inva 99.1 9.7E-11 3.3E-15 121.1 7.9 145 270-436 64-208 (605)
101 1io0_A Tropomodulin; LRR prote 99.1 1.3E-09 4.4E-14 94.9 13.4 123 316-442 31-167 (185)
102 1h6t_A Internalin B; cell adhe 99.1 3.8E-10 1.3E-14 106.1 10.1 107 291-414 108-214 (291)
103 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 8.5E-11 2.9E-15 78.6 3.7 46 47-92 5-52 (53)
104 1io0_A Tropomodulin; LRR prote 99.1 1E-09 3.6E-14 95.4 11.4 131 338-476 25-167 (185)
105 2xwt_C Thyrotropin receptor; s 99.0 4.2E-11 1.4E-15 109.4 1.6 80 320-410 154-236 (239)
106 1m9s_A Internalin B; cell inva 99.0 7E-10 2.4E-14 114.7 8.6 123 165-305 41-163 (605)
107 3m19_A Variable lymphocyte rec 99.0 5.3E-11 1.8E-15 109.6 0.2 154 273-436 37-190 (251)
108 1p9a_G Platelet glycoprotein I 99.0 2.1E-10 7.1E-15 107.8 4.3 57 140-202 9-65 (290)
109 1xeu_A Internalin C; cellular 99.0 5.5E-10 1.9E-14 103.3 5.9 143 271-436 41-183 (263)
110 2je0_A Acidic leucine-rich nuc 98.9 2.6E-10 8.9E-15 95.6 2.7 84 348-433 63-148 (149)
111 3m19_A Variable lymphocyte rec 98.9 8.6E-10 3E-14 101.4 5.4 87 320-413 106-192 (251)
112 1xeu_A Internalin C; cellular 98.9 6.1E-10 2.1E-14 103.0 3.9 150 241-414 37-186 (263)
113 2ell_A Acidic leucine-rich nuc 98.9 2.3E-10 8E-15 98.1 0.5 88 347-436 69-158 (168)
114 3sb4_A Hypothetical leucine ri 98.9 1.1E-09 3.6E-14 105.2 4.2 81 111-202 24-134 (329)
115 2je0_A Acidic leucine-rich nuc 98.8 3.6E-09 1.2E-13 88.6 4.7 129 167-329 17-148 (149)
116 2ell_A Acidic leucine-rich nuc 98.8 1.4E-09 4.9E-14 93.2 2.1 63 347-411 93-158 (168)
117 3sb4_A Hypothetical leucine ri 98.7 1E-09 3.5E-14 105.3 -0.0 109 141-255 25-134 (329)
118 3cvr_A Invasion plasmid antige 98.7 8.8E-09 3E-13 105.4 6.8 152 270-448 99-252 (571)
119 2xot_A Amphoterin-induced prot 98.7 1.2E-09 4.1E-14 106.2 -0.3 155 273-436 41-200 (361)
120 2o6s_A Variable lymphocyte rec 98.7 1.5E-09 5.2E-14 96.6 0.0 105 273-384 30-134 (208)
121 3cvr_A Invasion plasmid antige 98.7 1.5E-08 5.2E-13 103.6 5.6 192 166-421 58-251 (571)
122 1dce_A Protein (RAB geranylger 98.7 6.4E-10 2.2E-14 114.3 -4.7 104 320-432 462-567 (567)
123 2v9t_B SLIT homolog 2 protein 98.6 4.4E-09 1.5E-13 94.4 0.7 106 272-384 33-138 (220)
124 1ds9_A Outer arm dynein; leuci 98.6 6.1E-09 2.1E-13 91.8 1.2 103 320-431 69-180 (198)
125 2o6s_A Variable lymphocyte rec 98.6 2.1E-09 7.1E-14 95.7 -1.9 150 245-412 28-177 (208)
126 1pgv_A TMD-1, tropomodulin TMD 98.6 5.8E-07 2E-11 77.4 12.6 120 312-434 32-166 (197)
127 1dce_A Protein (RAB geranylger 98.6 1.7E-09 5.9E-14 111.1 -3.8 179 242-440 346-547 (567)
128 1a9n_A U2A', U2A'; complex (nu 98.6 1.1E-08 3.7E-13 88.3 1.7 108 321-436 42-151 (176)
129 3e6j_A Variable lymphocyte rec 98.6 1.8E-08 6.2E-13 91.0 3.0 38 398-436 133-170 (229)
130 1a9n_A U2A', U2A'; complex (nu 98.6 2.5E-08 8.6E-13 86.0 3.6 59 242-305 16-74 (176)
131 1pgv_A TMD-1, tropomodulin TMD 98.5 5.5E-07 1.9E-11 77.5 10.6 117 293-412 39-169 (197)
132 4ay9_X Follicle-stimulating ho 98.5 1.5E-09 5E-14 105.2 -6.8 160 272-439 31-191 (350)
133 2xot_A Amphoterin-induced prot 98.5 2.3E-08 7.7E-13 97.2 1.6 29 170-202 21-49 (361)
134 1ds9_A Outer arm dynein; leuci 98.5 2.2E-08 7.5E-13 88.2 1.2 132 267-413 44-185 (198)
135 2v70_A SLIT-2, SLIT homolog 2 98.5 2.3E-08 7.8E-13 89.7 0.8 86 320-412 80-165 (220)
136 4ay9_X Follicle-stimulating ho 98.4 4.9E-09 1.7E-13 101.5 -4.7 78 321-409 177-255 (350)
137 3e6j_A Variable lymphocyte rec 98.4 6.3E-08 2.1E-12 87.4 2.9 107 271-385 64-170 (229)
138 2v9t_B SLIT homolog 2 protein 98.4 3.2E-08 1.1E-12 88.7 0.6 132 245-385 32-163 (220)
139 2v70_A SLIT-2, SLIT homolog 2 98.3 1.9E-07 6.6E-12 83.6 3.4 62 269-332 103-164 (220)
140 2wfh_A SLIT homolog 2 protein 98.1 8.1E-07 2.8E-11 77.6 3.1 32 273-305 33-64 (193)
141 2e31_A FBS1, F-box only protei 98.1 7.3E-07 2.5E-11 81.6 2.7 40 47-86 47-87 (297)
142 3l2o_B F-box only protein 4; s 98.1 3.5E-07 1.2E-11 82.4 0.3 47 49-95 3-51 (312)
143 1w8a_A SLIT protein; signaling 98.1 2.5E-07 8.7E-12 80.8 -1.6 37 399-436 101-137 (192)
144 2o6r_A Variable lymphocyte rec 98.0 2.2E-06 7.4E-11 73.7 3.5 13 399-411 123-135 (177)
145 2wfh_A SLIT homolog 2 protein 98.0 1E-06 3.6E-11 76.9 0.3 86 347-436 52-137 (193)
146 2o6r_A Variable lymphocyte rec 98.0 2.9E-06 1E-10 72.9 2.9 85 348-436 51-135 (177)
147 1w8a_A SLIT protein; signaling 98.0 1.6E-06 5.5E-11 75.7 1.1 13 399-411 125-137 (192)
148 4b8c_D Glucose-repressible alc 97.9 2.1E-06 7.1E-11 91.1 0.9 85 320-414 246-330 (727)
149 4b8c_D Glucose-repressible alc 97.8 4.5E-06 1.5E-10 88.5 0.7 113 265-389 218-330 (727)
150 4fdw_A Leucine rich hypothetic 97.7 8.3E-06 2.8E-10 79.9 0.9 237 139-436 111-356 (401)
151 4fdw_A Leucine rich hypothetic 97.6 5.3E-06 1.8E-10 81.3 -1.3 122 111-254 112-235 (401)
152 3v7d_B Cell division control p 97.6 2.6E-05 9E-10 78.1 2.8 49 46-94 10-61 (464)
153 1p22_A F-BOX/WD-repeat protein 97.5 2.5E-05 8.5E-10 77.7 2.3 47 47-93 7-59 (435)
154 3g39_A Variable lymphocyte rec 97.4 6.8E-05 2.3E-09 63.7 2.5 33 273-305 32-64 (170)
155 2ovr_B FBW7, F-BOX/WD repeat p 97.4 9.1E-05 3.1E-09 73.7 3.8 48 46-93 14-63 (445)
156 3g39_A Variable lymphocyte rec 97.3 3.5E-05 1.2E-09 65.6 0.6 86 321-413 30-115 (170)
157 2r9u_A Variable lymphocyte rec 97.3 7.5E-05 2.6E-09 63.7 2.5 34 272-305 34-67 (174)
158 3rw6_A Nuclear RNA export fact 97.3 0.0003 1E-08 64.0 5.8 31 401-431 221-257 (267)
159 4fs7_A Uncharacterized protein 97.0 3.6E-05 1.2E-09 75.4 -2.9 80 347-434 295-375 (394)
160 3rw6_A Nuclear RNA export fact 97.0 0.00054 1.8E-08 62.3 5.1 91 366-460 162-259 (267)
161 2r9u_A Variable lymphocyte rec 96.8 0.00043 1.5E-08 59.0 1.9 14 242-255 54-67 (174)
162 2ifg_A High affinity nerve gro 96.6 0.00063 2.2E-08 65.2 2.4 88 268-362 28-116 (347)
163 2ifg_A High affinity nerve gro 96.2 0.0021 7.1E-08 61.5 2.8 89 241-333 27-115 (347)
164 4gt6_A Cell surface protein; l 96.0 0.0013 4.3E-08 64.3 0.5 104 319-435 263-367 (394)
165 4fs7_A Uncharacterized protein 95.4 0.0059 2E-07 59.5 2.4 99 318-430 294-393 (394)
166 4gt6_A Cell surface protein; l 87.8 0.49 1.7E-05 45.7 4.9 121 165-304 263-387 (394)
167 4h09_A Hypothetical leucine ri 78.3 0.44 1.5E-05 45.7 0.1 128 269-410 215-343 (379)
168 3rfe_A Platelet glycoprotein I 75.2 1.9 6.5E-05 33.9 3.0 43 272-314 32-74 (130)
169 4h09_A Hypothetical leucine ri 74.3 1.7 5.9E-05 41.4 3.1 32 165-200 215-248 (379)
170 3rfe_A Platelet glycoprotein I 62.7 3.2 0.00011 32.6 1.8 15 322-336 32-46 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.1e-39 Score=340.36 Aligned_cols=427 Identities=22% Similarity=0.325 Sum_probs=302.0
Q ss_pred CCcccCCCHHHHHHHHccCC-hhhhhHHHHHhHHHHHhhcccceeeeeccccccccchHHHhccCCceeEEEeeccCCc-
Q 009671 48 YDYISNLPDECLACIFQSLS-SGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFSRFDVVTKLALKCDRRS- 125 (529)
Q Consensus 48 ~~~~~~LP~eil~~If~~L~-~~d~~~~~~Vck~W~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~- 125 (529)
.|.|+.||+||+.+||+||+ .+|++++++|||+|+++....|+.+.+...... ....++.+++++++|+++.....
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFA 80 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--CHHHHHhhCCCceEEeccCCCchh
Confidence 47899999999999999999 999999999999999997777888877654332 23456778899999999842110
Q ss_pred ---------cccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc-cChHHHHHHHhcCCCCC
Q 009671 126 ---------VSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLE 195 (529)
Q Consensus 126 ---------~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~l~~~~~~~~~L~ 195 (529)
......++..+...+++|++|++++| .+++..+..+...+++|++|++++|. +++.++..+...+++|+
T Consensus 81 ~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 81 DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred hcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence 02234566777778999999999986 68888888887779999999999994 77778888888899999
Q ss_pred EEecCCccCCCccccccccCCCcccCccchhhccccc---cCCcchhhhhcCCCCCeEeccccCCCch------------
Q 009671 196 ELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELY---NGQCFGPLIIGAKNLRTLKLFRCSGDWD------------ 260 (529)
Q Consensus 196 ~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------ 260 (529)
+|++.+|. +++.+...+......+++|+.|++..+. ....+..+...+++|++|++.+|.....
T Consensus 160 ~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 238 (594)
T 2p1m_B 160 ELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238 (594)
T ss_dssp EEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCS
T ss_pred EEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcce
Confidence 99999875 4443332222222356778887776653 1123344445577777777776632111
Q ss_pred ----------------------------------------HHHHHHHhhcCCccEEEeeccccChHHHHHh-hcCCCCCe
Q 009671 261 ----------------------------------------KLLQLVTDRVTSLVEIHLERIQVTDVGLAAI-SNCLDLEI 299 (529)
Q Consensus 261 ----------------------------------------~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~ 299 (529)
..+..+...+++|++|++++|.+++..+..+ ..+++|++
T Consensus 239 ~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318 (594)
T ss_dssp EEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred EcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence 1122222345667777777777776665553 45788888
Q ss_pred EEecCCCCCChhhHHHHHHhCCCCcEEEecCc------ccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcC
Q 009671 300 MHLVKTPECTNLGLAAVAERCKLLRKLHIDGW------KANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNC 373 (529)
Q Consensus 300 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~------~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~ 373 (529)
|++.+| +++.++..+...+++|++|++.++ .+..+++.++..+...+++|+.|.+.++.+++..+..+...+
T Consensus 319 L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~ 396 (594)
T 2p1m_B 319 LWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR 396 (594)
T ss_dssp EEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred EeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC
Confidence 888776 456667777777888888888431 235677788877777788888888877888888888877778
Q ss_pred CCCCEEEcc-----CCCCCC----hhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHH
Q 009671 374 QNLERLALC-----GSDTVG----DVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGAD 444 (529)
Q Consensus 374 ~~L~~L~l~-----~~~~~~----~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~ 444 (529)
++|++|+++ +|..++ +.++..+...|++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++.
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~ 474 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH 474 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH
Confidence 888888888 566777 677777777888888888877 78888888887668888888888887 8888887
Q ss_pred HHHhcCCcEEEEeccCccccccccCCccccCCc-----cCC-CcccccCcccc
Q 009671 445 WLRARREYVVVNLDSGEAEHQDASDGGVQENGI-----EFP-PQMVQPSVASS 491 (529)
Q Consensus 445 ~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~~-----~~p-l~~l~l~~c~~ 491 (529)
.+....+. +..+++++|.+.+.+. .+| ++.+.+++|..
T Consensus 475 ~l~~~~~~---------L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 475 HVLSGCDS---------LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTT---------CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHhcCCC---------cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 77655433 4555666666654432 245 88888888876
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.7e-36 Score=316.49 Aligned_cols=404 Identities=20% Similarity=0.292 Sum_probs=269.7
Q ss_pred ccCCCHHHHHHHHccC-ChhhhhHHHHHhHHHHHhhcccceeeeeccccccccchHHHhc--------------------
Q 009671 51 ISNLPDECLACIFQSL-SSGDRKRCSLVCRRWLRIEGQSRHRLSLNAQSELLPMIPSLFS-------------------- 109 (529)
Q Consensus 51 ~~~LP~eil~~If~~L-~~~d~~~~~~Vck~W~~~~~~~~~~~~l~~~~~~~~~l~~~~~-------------------- 109 (529)
...||+|||.+||+|| +.+|++++++|||+|+.+....+..+.+.... ......++.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 90 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCY--TATPDRLSRRFPNLRSLKLKGKPRAAMFN 90 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGG--GSCHHHHHHHCTTCSEEEEECSCGGGGGT
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecc--ccChHHHHHhCCCCeEEEecCCcchhhcc
Confidence 3479999999999999 79999999999999999865555555543221 112223333
Q ss_pred -------------------cCCceeEEEeeccCCccccCHHHHHHHHHcCCC-ccEEecCCCCCCCHHHHHHHHhcCCCC
Q 009671 110 -------------------RFDVVTKLALKCDRRSVSVGDDALILISQKCRN-LTRLKLRACRELTDAGMSVFAKNCKGL 169 (529)
Q Consensus 110 -------------------~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~-L~~L~L~~~~~~~~~~l~~l~~~~~~L 169 (529)
.+++|++|+++ ...+++..+..+...++. |++|++.+|..+++.++..+...|++|
T Consensus 91 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~----~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 166 (592)
T 3ogk_B 91 LIPENWGGYVTPWVTEISNNLRQLKSVHFR----RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166 (592)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEE----SCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred cccccccccchHHHHHHHhhCCCCCeEEee----ccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCC
Confidence 44555555554 334555555555443444 555555555444445555555555556
Q ss_pred CEEEecCcccC-------------------------------hHHHHHHHhcCCCCCEEecCCccCCCcc----------
Q 009671 170 KKLSCGSCTFG-------------------------------AKGMNAVLDNCSTLEELSVKRLRGITDG---------- 208 (529)
Q Consensus 170 ~~L~L~~~~~~-------------------------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~---------- 208 (529)
++|+|++|.++ ...+..++..+++|++|++.++......
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~ 246 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCC
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHH
Confidence 66665555432 1223333333344444444332100000
Q ss_pred --cc---------ccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEE
Q 009671 209 --AA---------AEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIH 277 (529)
Q Consensus 209 --~~---------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~ 277 (529)
.+ .........+++|+.+.+.. .....++..+..+++|++|++++|. +.+..+..+...+++|+.|+
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT-CCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccc-cchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEe
Confidence 00 00000001122233332222 1233445566778899999999886 67777767778889999999
Q ss_pred eeccccChHHHHHh-hcCCCCCeEEecC----------CCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHh
Q 009671 278 LERIQVTDVGLAAI-SNCLDLEIMHLVK----------TPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAK 346 (529)
Q Consensus 278 l~~~~l~~~~~~~l-~~~~~L~~L~L~~----------~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~ 346 (529)
+. +.+.+.++..+ ..+++|++|++.+ |..+++.++..+...+++|++|+++. +.+++.++..+..
T Consensus 325 L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~---~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 325 TR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV---SDITNESLESIGT 400 (592)
T ss_dssp EE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE---SCCCHHHHHHHHH
T ss_pred cc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec---CCccHHHHHHHHh
Confidence 98 56677776666 4588999999995 77888888888888899999999943 5688888888888
Q ss_pred cCccccceEee----cccCcH----HHHHHHHhcCCCCCEEEccCCC-CCChhHHHHHHHcCCcCCEEEeccCCCCHHHH
Q 009671 347 CCPNLQELVLI----GVNPTR----VSLEVLASNCQNLERLALCGSD-TVGDVEISCIAAKCVALKKLCIKSCPVSDHGM 417 (529)
Q Consensus 347 ~~~~L~~L~L~----~~~i~~----~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l 417 (529)
.+++|++|+++ .+.+++ .++..+...|++|++|+++.|. .+++..+..+...+++|+.|+|++|.+++.++
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 89999999997 445664 4677777889999999997764 47888888888889999999999999999888
Q ss_pred HHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccCC
Q 009671 418 EALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENG 476 (529)
Q Consensus 418 ~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~ 476 (529)
..+...|++|++|++++|. +++.++..+....+. +..+++++|.+++.|
T Consensus 481 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~---------L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPS---------LRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSS---------CCEEEEESCBCCTTC
T ss_pred HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCc---------cCeeECcCCcCCHHH
Confidence 8888889999999999999 888888887765443 455667777776665
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=6.3e-29 Score=260.67 Aligned_cols=338 Identities=21% Similarity=0.327 Sum_probs=173.7
Q ss_pred hHHHhccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc-----
Q 009671 104 IPSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT----- 178 (529)
Q Consensus 104 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~----- 178 (529)
+..+...+++|++|+++ ...+++..+..+...+++|++|++.+|..+++.++..+...|++|++|++++|.
T Consensus 97 l~~l~~~~~~L~~L~L~----~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLK----RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp HHHHHHHCTTCCEEEEE----SCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred HHHHHHhCCCCCeEEee----CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 34444556666666666 344566666666545666666666665555555555555556666666665554
Q ss_pred -------------------------cChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhcccc--
Q 009671 179 -------------------------FGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKEL-- 231 (529)
Q Consensus 179 -------------------------~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-- 231 (529)
++...+..+...+++|++|++.+|..+.. +...+. .+++|+.|.+..+
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~---~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQ---RAPQLEELGTGGYTA 247 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHH---HCTTCSEEECSBCCC
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHh---cCCcceEcccccccC
Confidence 33445555555566666666665521111 000000 1122222211100
Q ss_pred ----------------------------ccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecccc
Q 009671 232 ----------------------------YNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQV 283 (529)
Q Consensus 232 ----------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l 283 (529)
.....++.++..+++|++|++++|. +.+..+..+...+++|++|++.++ +
T Consensus 248 ~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~ 325 (594)
T 2p1m_B 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-I 325 (594)
T ss_dssp CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-G
T ss_pred ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-c
Confidence 0011122233345556666665554 444444444445555555555554 3
Q ss_pred ChHHHHHhh-cCCCCCeEEe--------cCCCCC-------------------------ChhhHHHHHHhCCCCcEEEec
Q 009671 284 TDVGLAAIS-NCLDLEIMHL--------VKTPEC-------------------------TNLGLAAVAERCKLLRKLHID 329 (529)
Q Consensus 284 ~~~~~~~l~-~~~~L~~L~L--------~~~~~~-------------------------~~~~l~~l~~~~~~L~~L~L~ 329 (529)
++.++..+. .+++|++|++ .++..+ ++.++..+...+++|+.|+++
T Consensus 326 ~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 344444333 2455555555 222334 444444444445555555554
Q ss_pred Cc---ccCccC----hHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcC
Q 009671 330 GW---KANRIG----DEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVAL 402 (529)
Q Consensus 330 ~~---~~~~i~----~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L 402 (529)
.+ .++.++ +.++..+...+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++..++..|++|
T Consensus 406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSL 483 (594)
T ss_dssp ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTC
T ss_pred cccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCc
Confidence 10 012344 445555555555555555544 55555555554446666666666554 5666666655556666
Q ss_pred CEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEE
Q 009671 403 KKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVV 455 (529)
Q Consensus 403 ~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l 455 (529)
+.|+|++|++++.++..+...+++|+.|++++|. +++++++.++...|.+++
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHHHHCTTEEE
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHHHhCCCCEE
Confidence 6666666666666666555556666666666666 466666666666666554
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.3e-28 Score=256.27 Aligned_cols=384 Identities=17% Similarity=0.184 Sum_probs=248.1
Q ss_pred eeEEEeeccC----------CccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCC-CCEEEecCcc-cCh
Q 009671 114 VTKLALKCDR----------RSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKG-LKKLSCGSCT-FGA 181 (529)
Q Consensus 114 l~~L~l~~~~----------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~-L~~L~L~~~~-~~~ 181 (529)
+++|+++... ....+....+..+...+++|++|+|+++ .+++..+..+...+++ |++|++++|. ++.
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~ 153 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTT 153 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEH
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCH
Confidence 7888886311 1233456678888878999999999987 7888888888776776 9999999998 777
Q ss_pred HHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccC----CcchhhhhcCCCCCeEeccccCC
Q 009671 182 KGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNG----QCFGPLIIGAKNLRTLKLFRCSG 257 (529)
Q Consensus 182 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~ 257 (529)
.++..+...+++|++|++.++. +++.+...+......+++|+.|++..+... ..+..++..+++|++|++.+|..
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 8888888899999999999884 333221111111125678888888766543 44556667788888888888642
Q ss_pred CchHHHHHHHhhcCCccEEEeecccc-------------------------ChHHHH-HhhcCCCCCeEEecCCCCCChh
Q 009671 258 DWDKLLQLVTDRVTSLVEIHLERIQV-------------------------TDVGLA-AISNCLDLEIMHLVKTPECTNL 311 (529)
Q Consensus 258 ~~~~~l~~l~~~~~~L~~L~l~~~~l-------------------------~~~~~~-~l~~~~~L~~L~L~~~~~~~~~ 311 (529)
. .+......+++|++|++..+.. ....+. .+..+++|++|++++|. +++.
T Consensus 233 ~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~ 308 (592)
T 3ogk_B 233 L---ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETE 308 (592)
T ss_dssp G---GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHH
T ss_pred H---HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHH
Confidence 1 2334455566677776653210 011111 12346677777777774 6666
Q ss_pred hHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEee-----------cccCcHHHHHHHHhcCCCCCEEE
Q 009671 312 GLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLI-----------GVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 312 ~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~-----------~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
.+..+...+++|+.|++++ .+.+.++..+...+++|++|+++ .+.+++.++..+...|++|++|+
T Consensus 309 ~~~~~~~~~~~L~~L~L~~----~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETRN----VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp HHHHHHTTCTTCCEEEEEG----GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred HHHHHHHhCcCCCEEeccC----ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 6656566677777777762 35666666666677777777777 24666766766666777777777
Q ss_pred ccCCCCCChhHHHHHHHcCCcCCEEEec----cCCCCH----HHHHHHHhcCCCccEEEeccCCC-CCHHHHHHHHhcCC
Q 009671 381 LCGSDTVGDVEISCIAAKCVALKKLCIK----SCPVSD----HGMEALAGGCPNLVKVKVKKCRA-VTTEGADWLRARRE 451 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~~~~~~L~~L~l~----~~~i~~----~~l~~l~~~~~~L~~L~l~~c~~-i~~~~~~~l~~~~~ 451 (529)
+ .|..+++.++..+...+++|+.|+++ .+.+++ .++..+...|++|++|++++|.+ +++.++..+....+
T Consensus 385 l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 385 V-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp E-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred e-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 7 34456777777777667777777775 234554 45666666677777777766553 67777776665433
Q ss_pred cEEEEeccCccccccccCCccccCC-----ccCC-CcccccCccccCCCc-hhHHHHHhhhhcccccccccccc
Q 009671 452 YVVVNLDSGEAEHQDASDGGVQENG-----IEFP-PQMVQPSVASSRNTR-STSFKTRLGLLSGRSLVACTLRR 518 (529)
Q Consensus 452 ~l~l~l~~~~~~~ld~~~~~~~~~~-----~~~p-l~~l~l~~c~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~ 518 (529)
. ++.+++++|.+.+.+ ..++ ++.+.+++|.. ++. ...+...+..|+.|+|++|.+..
T Consensus 464 ~---------L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 464 N---------VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp T---------CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC-BHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred c---------ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC-cHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 3 344445555554422 1234 77777777773 332 33444566677777777777543
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=6.8e-28 Score=234.05 Aligned_cols=291 Identities=20% Similarity=0.272 Sum_probs=213.9
Q ss_pred CCCcccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhh--cccceeeeeccccccccchHHHhccC--CceeEEEeecc
Q 009671 47 AYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIE--GQSRHRLSLNAQSELLPMIPSLFSRF--DVVTKLALKCD 122 (529)
Q Consensus 47 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~--~~l~~L~l~~~ 122 (529)
+...|++||+||+.+||+||+.+|+.+++.|||+|++++ +..|+.+++...... +..+.++ ++++.+++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~-- 78 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCP-- 78 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECT--
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcC--
Confidence 446789999999999999999999999999999999985 567999988764332 3334444 678888887
Q ss_pred CCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCc
Q 009671 123 RRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 123 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
...+...... + ..+++|++|++++| .+++.++..++..+++|++|++++|.+++..... +..+++|++|++.++
T Consensus 79 --~n~l~~~~~~-~-~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 79 --RSFMDQPLAE-H-FSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGC 152 (336)
T ss_dssp --TCEECSCCCS-C-CCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTC
T ss_pred --Cccccccchh-h-ccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCC
Confidence 2222221111 1 24789999999986 5777777778888999999999999887765554 445899999999988
Q ss_pred cCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcC-CccEEEeecc
Q 009671 203 RGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVT-SLVEIHLERI 281 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~ 281 (529)
..+++.++ +..+..+++|++|++++|..+.+..+......++ +|++|++++|
T Consensus 153 ~~l~~~~l---------------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 153 SGFSEFAL---------------------------QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp BSCCHHHH---------------------------HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCHHHH---------------------------HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 65554322 2344678889999998886677666677777788 8999999888
Q ss_pred --ccChHHHHH-hhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeec
Q 009671 282 --QVTDVGLAA-ISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIG 358 (529)
Q Consensus 282 --~l~~~~~~~-l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~ 358 (529)
.+++..+.. +..+++|+.|++++|..+++.....+. .+++|++|++++|. .+.+.++..+ ..+++|+.|++++
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~--~~~~~~~~~l-~~~~~L~~L~l~~ 281 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCY--DIIPETLLEL-GEIPTLKTLQVFG 281 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCT--TCCGGGGGGG-GGCTTCCEEECTT
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCC--CCCHHHHHHH-hcCCCCCEEeccC
Confidence 677655544 356889999999888656766666554 47889999998873 5666655444 3588999999988
Q ss_pred ccCcHHHHHHHHhcCCCCCEEEccCC
Q 009671 359 VNPTRVSLEVLASNCQNLERLALCGS 384 (529)
Q Consensus 359 ~~i~~~~l~~l~~~~~~L~~L~l~~~ 384 (529)
| +++..+..+...++.|+ ++++
T Consensus 282 ~-i~~~~~~~l~~~l~~L~---l~~n 303 (336)
T 2ast_B 282 I-VPDGTLQLLKEALPHLQ---INCS 303 (336)
T ss_dssp S-SCTTCHHHHHHHSTTSE---ESCC
T ss_pred c-cCHHHHHHHHhhCcceE---Eecc
Confidence 8 88877777765555554 5544
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=7.5e-27 Score=236.99 Aligned_cols=388 Identities=17% Similarity=0.184 Sum_probs=262.0
Q ss_pred CceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHH---HHHhcCCCCCEEEecCcccChHHHHHHH
Q 009671 112 DVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMS---VFAKNCKGLKKLSCGSCTFGAKGMNAVL 188 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~---~l~~~~~~L~~L~L~~~~~~~~~l~~~~ 188 (529)
+++++|+++ +..+++.....+...+++|++|++++| .+++.++. ..+..+++|++|++++|.+++.++..+.
T Consensus 3 ~~l~~L~Ls----~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQ----CEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEE----SCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhh----hcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 457777887 566677766665666778888888876 56665433 3344567888888888877776776766
Q ss_pred hcCC----CCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhh-----hhcCCCCCeEeccccCCCc
Q 009671 189 DNCS----TLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPL-----IIGAKNLRTLKLFRCSGDW 259 (529)
Q Consensus 189 ~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~ 259 (529)
..++ +|++|+++++ .+++.+...+......+++|+.|++.++......... ....++|++|++++|. +.
T Consensus 78 ~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~ 155 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LS 155 (461)
T ss_dssp HTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CB
T ss_pred HHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CC
Confidence 6666 6888888876 3444322111111125667777777665443222211 2235679999999874 44
Q ss_pred hHH---HHHHHhhcCCccEEEeeccccChHHHHHhhc-----CCCCCeEEecCCCCCChhhH---HHHHHhCCCCcEEEe
Q 009671 260 DKL---LQLVTDRVTSLVEIHLERIQVTDVGLAAISN-----CLDLEIMHLVKTPECTNLGL---AAVAERCKLLRKLHI 328 (529)
Q Consensus 260 ~~~---l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~L~~~~~~~~~~l---~~l~~~~~~L~~L~L 328 (529)
... +......+++|++|++++|.+++.+...+.. .++|++|++++| .+++.+. ......+++|++|++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEec
Confidence 433 3344456789999999999888877766643 669999999988 5566553 333446899999999
Q ss_pred cCcccCccChHHHHHHHh----cCccccceEeecccCcHHHHHHH---HhcCCCCCEEEccCCCCCChhHHHHHHHc---
Q 009671 329 DGWKANRIGDEGLIAVAK----CCPNLQELVLIGVNPTRVSLEVL---ASNCQNLERLALCGSDTVGDVEISCIAAK--- 398 (529)
Q Consensus 329 ~~~~~~~i~~~~l~~~~~----~~~~L~~L~L~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~l~~l~~~--- 398 (529)
++| .+++.++..+.. .+++|++|++++|.+++.+...+ ...+++|++|+++++. +++.+...+...
T Consensus 235 s~n---~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 235 GSN---KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLE 310 (461)
T ss_dssp CSS---BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTS
T ss_pred cCC---cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhcc
Confidence 886 466666655543 47899999999999998774443 3468999999999884 777777666654
Q ss_pred -CCcCCEEEeccCCCCHHHHHHHH---hcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCcccc
Q 009671 399 -CVALKKLCIKSCPVSDHGMEALA---GGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQE 474 (529)
Q Consensus 399 -~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~ 474 (529)
.++|++|++++|.+++.+...+. ..+++|++|++++|. +++.++..+...... ..+.+..+++++|.+.+
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~-----~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQ-----PGSVLRVLWLADCDVSD 384 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTS-----TTCCCCEEECTTSCCCH
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcC-----CCCceEEEECCCCCCCh
Confidence 35899999999998877544433 357899999999996 998888888764211 12457778888888875
Q ss_pred CCc--------cCC-CcccccCccccCCCchhHHHHHhh----hhccccccccccc
Q 009671 475 NGI--------EFP-PQMVQPSVASSRNTRSTSFKTRLG----LLSGRSLVACTLR 517 (529)
Q Consensus 475 ~~~--------~~p-l~~l~l~~c~~~~~~~~~~~~~~~----~l~~l~l~~~~~~ 517 (529)
.|. ..+ ++.+++++|.........+...+. .|..|.+.++.+.
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred hhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 331 134 888888888755443444444343 4666766665543
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.1e-26 Score=233.74 Aligned_cols=354 Identities=19% Similarity=0.210 Sum_probs=257.4
Q ss_pred hHHHhccCCceeEEEeeccCCccccCHHHHHHHH---HcCCCccEEecCCCCCCCHHHHHHHHhcCC----CCCEEEecC
Q 009671 104 IPSLFSRFDVVTKLALKCDRRSVSVGDDALILIS---QKCRNLTRLKLRACRELTDAGMSVFAKNCK----GLKKLSCGS 176 (529)
Q Consensus 104 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~----~L~~L~L~~ 176 (529)
+..++..++++++|+++ ...+++.....+. ..+++|++|+++++ .+++.++..+...++ +|++|++++
T Consensus 20 ~~~~~~~~~~L~~L~L~----~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLD----DCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHHHHHHHTTCSEEEEE----SSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred HHHHHhhcCCccEEEcc----CCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccC
Confidence 45557778889999998 5667776544443 45789999999985 687878877777776 699999999
Q ss_pred cccChHH---HHHHHhcCCCCCEEecCCccCCCccccccccCC-CcccCccchhhccccccCCc----chhhhhcCCCCC
Q 009671 177 CTFGAKG---MNAVLDNCSTLEELSVKRLRGITDGAAAEPIGP-GVAASSLKTVCLKELYNGQC----FGPLIIGAKNLR 248 (529)
Q Consensus 177 ~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~ 248 (529)
|.+++.+ +...+..+++|++|+++++. +++.+...+... ....++|+.|++.++..... +...+..+++|+
T Consensus 95 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 95 CCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp SCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred CCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence 9887654 44455678899999998874 544333221110 01245788888887755442 345667789999
Q ss_pred eEeccccCCCchHHHHHHHh----hcCCccEEEeeccccChHHHH----HhhcCCCCCeEEecCCCCCChhhHHHHHH--
Q 009671 249 TLKLFRCSGDWDKLLQLVTD----RVTSLVEIHLERIQVTDVGLA----AISNCLDLEIMHLVKTPECTNLGLAAVAE-- 318 (529)
Q Consensus 249 ~L~l~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~~~~~~l~~l~~-- 318 (529)
+|+++++. +.+.....+.. ..++|++|++++|.+++.+.. .+..+++|++|+++++ .+++.++..+..
T Consensus 174 ~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~ 251 (461)
T 1z7x_W 174 ELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGL 251 (461)
T ss_dssp EEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHH
T ss_pred EEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHH
Confidence 99999875 55555555544 345899999999988886643 3456899999999988 567777665544
Q ss_pred --hCCCCcEEEecCcccCccChHHH---HHHHhcCccccceEeecccCcHHHHHHHHhc----CCCCCEEEccCCCCCCh
Q 009671 319 --RCKLLRKLHIDGWKANRIGDEGL---IAVAKCCPNLQELVLIGVNPTRVSLEVLASN----CQNLERLALCGSDTVGD 389 (529)
Q Consensus 319 --~~~~L~~L~L~~~~~~~i~~~~l---~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~----~~~L~~L~l~~~~~~~~ 389 (529)
.+++|++|++++| .+++.++ ......+++|++|++++|.+++.+...+... .++|++|++++|. +++
T Consensus 252 ~~~~~~L~~L~L~~n---~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~ 327 (461)
T 1z7x_W 252 LHPSSRLRTLWIWEC---GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTA 327 (461)
T ss_dssp TSTTCCCCEEECTTS---CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBG
T ss_pred hcCCCCceEEECcCC---CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-Cch
Confidence 4689999999986 4666654 3444568999999999999988877666543 3689999999986 776
Q ss_pred hHHHHH---HHcCCcCCEEEeccCCCCHHHHHHHHhc----CCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCcc
Q 009671 390 VEISCI---AAKCVALKKLCIKSCPVSDHGMEALAGG----CPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEA 462 (529)
Q Consensus 390 ~~l~~l---~~~~~~L~~L~l~~~~i~~~~l~~l~~~----~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~ 462 (529)
.+...+ ...+++|++|++++|.+++.++..+.+. +++|++|++.+|. ++++++..+..... ..+.+
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~------~~~~L 400 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLL------ANHSL 400 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHH------HCCCC
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHH------hCCCc
Confidence 654433 4557999999999999999888777643 5699999999997 99988777766421 12456
Q ss_pred ccccccCCccccCC
Q 009671 463 EHQDASDGGVQENG 476 (529)
Q Consensus 463 ~~ld~~~~~~~~~~ 476 (529)
..+|+++|.+.+.|
T Consensus 401 ~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 401 RELDLSNNCLGDAG 414 (461)
T ss_dssp CEEECCSSSCCHHH
T ss_pred cEEECCCCCCCHHH
Confidence 77788888887665
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=8.2e-21 Score=184.06 Aligned_cols=287 Identities=15% Similarity=0.151 Sum_probs=219.8
Q ss_pred cccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCC
Q 009671 126 VSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGI 205 (529)
Q Consensus 126 ~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 205 (529)
..+.++.+..|..+.+.- ++..+..+ -..+..+...-..++.++++++.+.+..+..+. .++++.|++.++. +
T Consensus 10 ~~LP~eil~~If~~L~~~---d~~~~~~v-c~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~--~~~l~~L~l~~n~-l 82 (336)
T 2ast_B 10 DSLPDELLLGIFSCLCLP---ELLKVSGV-CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSF-M 82 (336)
T ss_dssp SSSCHHHHHHHHTTSCHH---HHHHTTSS-CHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHH--HTTCSEEECTTCE-E
T ss_pred hhCCHHHHHHHHHhCCHH---HHHHHHHH-HHHHHHHhcCchhheeeccccccCCHHHHHhhh--hccceEEEcCCcc-c
Confidence 455677777776544322 23223222 234454443333588999998887755444322 1789999988652 2
Q ss_pred CccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccCh
Q 009671 206 TDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTD 285 (529)
Q Consensus 206 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~ 285 (529)
.... +. +..+++|++|++++|. +.+..+......+++|++|++++|.+++
T Consensus 83 ~~~~----------------------------~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~ 132 (336)
T 2ast_B 83 DQPL----------------------------AE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSD 132 (336)
T ss_dssp CSCC----------------------------CS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCH
T ss_pred cccc----------------------------hh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCH
Confidence 2210 01 2357899999999875 5556677778889999999999999999
Q ss_pred HHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCc-cccceEeecc--cCc
Q 009671 286 VGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCP-NLQELVLIGV--NPT 362 (529)
Q Consensus 286 ~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~-~L~~L~L~~~--~i~ 362 (529)
.....++.+++|++|++++|..+++.++..+...+++|++|++++| ..+++.++......++ +|++|++++| .++
T Consensus 133 ~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 133 PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC--FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC--TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC--CCcChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 8888899999999999999977888888888888999999999986 2577777888888899 9999999999 788
Q ss_pred HHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccC-CCCHHHHHHHHhcCCCccEEEeccCCCCCHH
Q 009671 363 RVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSC-PVSDHGMEALAGGCPNLVKVKVKKCRAVTTE 441 (529)
Q Consensus 363 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~ 441 (529)
+..+..+...+++|++|++++|..+++..+..+. .+++|++|++++| .+++.++..+. .+++|+.|++.+| ++++
T Consensus 211 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~ 286 (336)
T 2ast_B 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDG 286 (336)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTT
T ss_pred HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHH
Confidence 8888888789999999999999778887776654 5899999999999 58888776666 5999999999999 8988
Q ss_pred HHHHHHhcCCcEEE
Q 009671 442 GADWLRARREYVVV 455 (529)
Q Consensus 442 ~~~~l~~~~~~l~l 455 (529)
++..+....+.+.+
T Consensus 287 ~~~~l~~~l~~L~l 300 (336)
T 2ast_B 287 TLQLLKEALPHLQI 300 (336)
T ss_dssp CHHHHHHHSTTSEE
T ss_pred HHHHHHhhCcceEE
Confidence 88888876666553
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=8.8e-22 Score=204.23 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=99.9
Q ss_pred HHHhccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHH
Q 009671 105 PSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGM 184 (529)
Q Consensus 105 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l 184 (529)
+..+..+++|++|+++ ...+.......+ ..+++|++|+++++ .++...... +..+++|++|++++|.+.....
T Consensus 43 ~~~~~~l~~L~~L~Ls----~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 43 HGDLRACANLQVLILK----SSRINTIEGDAF-YSLGSLEHLDLSDN-HLSSLSSSW-FGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp SSTTSSCTTCCEEECT----TSCCCEECTTTT-TTCTTCCEEECTTS-CCCSCCHHH-HTTCTTCCEEECTTCCCSSSCS
T ss_pred hhhhhcCCcccEEECC----CCCcCccChhhc-cccccCCEEECCCC-ccCccCHHH-hccCCCCcEEECCCCcccccch
Confidence 3445677788888887 333332111112 34678888888875 444333222 3457888888888887653222
Q ss_pred HHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHH
Q 009671 185 NAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQ 264 (529)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 264 (529)
...+..+++|++|++.++..+...... .+ ..+++|+.|++..+......+..+..+++|++|++..+... ....
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~ 189 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRI-DF---AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA--FLLE 189 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTT-TT---TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST--THHH
T ss_pred hhhhhccCCccEEECCCCccccccCHh-hh---hcccccCeeeccCCcccccChhhhhccccCceEecccCccc--ccch
Confidence 223456788888888776433321111 11 15677888888776665555666677777888877765421 1222
Q ss_pred HHHhhcCCccEEEeeccccCh
Q 009671 265 LVTDRVTSLVEIHLERIQVTD 285 (529)
Q Consensus 265 ~l~~~~~~L~~L~l~~~~l~~ 285 (529)
.+...+++|+.|++++|.++.
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTT
T ss_pred hhHhhcccccEEEccCCcccc
Confidence 334456777888777776654
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1.8e-20 Score=182.52 Aligned_cols=284 Identities=18% Similarity=0.212 Sum_probs=165.4
Q ss_pred cCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHh
Q 009671 110 RFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLD 189 (529)
Q Consensus 110 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~ 189 (529)
.++++++|+++. ..+.+ +..+ ..+++|++|+++++ .++.... +..+++|++|++++|.++.- . .+.
T Consensus 42 ~l~~L~~L~l~~----~~i~~--~~~~-~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n~i~~~--~-~~~ 107 (347)
T 4fmz_A 42 ELESITKLVVAG----EKVAS--IQGI-EYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTNKITDI--S-ALQ 107 (347)
T ss_dssp HHTTCSEEECCS----SCCCC--CTTG-GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCC--G-GGT
T ss_pred hcccccEEEEeC----Ccccc--chhh-hhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCCcccCc--h-HHc
Confidence 345666666652 22211 1112 34677777777765 3333221 34567777777777765432 1 244
Q ss_pred cCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhh
Q 009671 190 NCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDR 269 (529)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 269 (529)
.+++|++|++.++. +..... ...+++|+.|++..+.....+.. +..+++|++|++.+|....... ...
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~------~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~----~~~ 175 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP------LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP----IAN 175 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG------GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG----GGG
T ss_pred CCCcCCEEECcCCc-ccCchh------hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh----hcc
Confidence 66777777777653 222111 11456666666665543333333 4667777777777765322211 345
Q ss_pred cCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCc
Q 009671 270 VTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCP 349 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~ 349 (529)
+++|++|++++|.+.+... +..+++|+.|+++++. +..... ...+++|++|++++|....+.. ...++
T Consensus 176 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~l~~~~~------~~~l~ 243 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNKITDLSP------LANLS 243 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG------GTTCT
T ss_pred CCCCCEEEccCCccccccc--ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEccCCccCCCcc------hhcCC
Confidence 6777777777776665433 5667777777777763 232221 3446777788777765433322 34567
Q ss_pred cccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccE
Q 009671 350 NLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVK 429 (529)
Q Consensus 350 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 429 (529)
+|++|++++|.+++. ..+ ..+++|++|++++|. +++.. ....+++|+.|++++|.+++.....+. .+++|+.
T Consensus 244 ~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~ 315 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAV-KDLTKLKMLNVGSNQ-ISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTT 315 (347)
T ss_dssp TCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSE
T ss_pred CCCEEECCCCccCCC--hhH-hcCCCcCEEEccCCc-cCCCh---hhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCE
Confidence 777777777766653 222 567777788777774 43321 134567778888887777766665555 5777888
Q ss_pred EEeccCCCCCH
Q 009671 430 VKVKKCRAVTT 440 (529)
Q Consensus 430 L~l~~c~~i~~ 440 (529)
|++++|. ++.
T Consensus 316 L~L~~n~-l~~ 325 (347)
T 4fmz_A 316 LFLSQNH-ITD 325 (347)
T ss_dssp EECCSSS-CCC
T ss_pred EEccCCc-ccc
Confidence 8887777 543
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=5.8e-20 Score=178.88 Aligned_cols=284 Identities=17% Similarity=0.127 Sum_probs=194.3
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCc
Q 009671 139 KCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGV 218 (529)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (529)
.+++|++|++.++ .+... .. ...+++|++|++++|.++.... +..+++|++|++.++. +... .. ..
T Consensus 42 ~l~~L~~L~l~~~-~i~~~--~~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~-i~~~--~~----~~ 107 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASI--QG-IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK-ITDI--SA----LQ 107 (347)
T ss_dssp HHTTCSEEECCSS-CCCCC--TT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCC--GG----GT
T ss_pred hcccccEEEEeCC-ccccc--hh-hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc-ccCc--hH----Hc
Confidence 3679999999986 44332 12 3469999999999998754322 6689999999999873 4432 11 12
Q ss_pred ccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCC
Q 009671 219 AASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLE 298 (529)
Q Consensus 219 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 298 (529)
.+++|+.|++.++...... . +..+++|++|++++|........ ...+++|+.|+++++.+.+... +..+++|+
T Consensus 108 ~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp TCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred CCCcCCEEECcCCcccCch-h-hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence 6788888888876554332 2 67788999999988754332111 4567789999998887766543 67788999
Q ss_pred eEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCE
Q 009671 299 IMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLER 378 (529)
Q Consensus 299 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~ 378 (529)
.|++++|. +..... ...+++|+.|+++++....+.. ...+++|++|++++|.+++... ...+++|++
T Consensus 181 ~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 247 (347)
T 4fmz_A 181 SLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDLSP---LANLSQLTW 247 (347)
T ss_dssp EEECTTSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred EEEccCCc-cccccc---ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCCcc---hhcCCCCCE
Confidence 99998873 333221 3457889999998875443332 3567889999999888776443 367888999
Q ss_pred EEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEec
Q 009671 379 LALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLD 458 (529)
Q Consensus 379 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~ 458 (529)
|++++|. +++. . ....+++|+.|++++|.+++. .. ...+++|+.|++.+|. ++......+...
T Consensus 248 L~l~~n~-l~~~--~-~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~l--------- 310 (347)
T 4fmz_A 248 LEIGTNQ-ISDI--N-AVKDLTKLKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQ-LGNEDMEVIGGL--------- 310 (347)
T ss_dssp EECCSSC-CCCC--G-GGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSC-CCGGGHHHHHTC---------
T ss_pred EECCCCc-cCCC--h-hHhcCCCcCEEEccCCccCCC--hh-hcCCCCCCEEECcCCc-CCCcChhHhhcc---------
Confidence 9998874 4432 1 134578899999999887763 22 3468889999999887 776655555432
Q ss_pred cCccccccccCCcccc
Q 009671 459 SGEAEHQDASDGGVQE 474 (529)
Q Consensus 459 ~~~~~~ld~~~~~~~~ 474 (529)
+.+..+++++|.+.+
T Consensus 311 -~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 311 -TNLTTLFLSQNHITD 325 (347)
T ss_dssp -TTCSEEECCSSSCCC
T ss_pred -ccCCEEEccCCcccc
Confidence 234555566665543
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=4.3e-20 Score=187.08 Aligned_cols=38 Identities=5% Similarity=-0.061 Sum_probs=20.4
Q ss_pred CcccccCccccCCCchhHHHHHhhhhccccccccccccccC
Q 009671 481 PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRRWSS 521 (529)
Q Consensus 481 l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 521 (529)
++.+.+++|....... ...+..|..|++.+|++.++|.
T Consensus 355 L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp CCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECCCB
T ss_pred CCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCCch
Confidence 4555555554322211 3455566667777777766654
No 13
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.3e-19 Score=177.27 Aligned_cols=203 Identities=17% Similarity=0.158 Sum_probs=125.3
Q ss_pred hcCCCCCeEeccccCCCchH---HHHHHHhhcCCccEEEeeccccChHHHHHhhc----C---------CCCCeEEecCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDK---LLQLVTDRVTSLVEIHLERIQVTDVGLAAISN----C---------LDLEIMHLVKT 305 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~----~---------~~L~~L~L~~~ 305 (529)
..+++|++|+++++. +... .+......+++|+.|++++|.+++.+...+.. + ++|++|++++|
T Consensus 91 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 345555555555543 2221 22223344556666666666665544433332 2 77788888776
Q ss_pred CCCChhhHHHH---HHhCCCCcEEEecCcccCccChHHHHHHHh----cCccccceEeecccCcHHHHHHH---HhcCCC
Q 009671 306 PECTNLGLAAV---AERCKLLRKLHIDGWKANRIGDEGLIAVAK----CCPNLQELVLIGVNPTRVSLEVL---ASNCQN 375 (529)
Q Consensus 306 ~~~~~~~l~~l---~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~----~~~~L~~L~L~~~~i~~~~l~~l---~~~~~~ 375 (529)
.+++.++..+ ...+++|++|++++| .+++.++..+.. .+++|+.|+|++|.+++.+...+ +..+++
T Consensus 170 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n---~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 170 -RLENGSMKEWAKTFQSHRLLHTVKMVQN---GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp -CCTGGGHHHHHHHHHHCTTCCEEECCSS---CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred -CCCcHHHHHHHHHHHhCCCcCEEECcCC---CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 4555555533 335678888888775 466666544433 56788888888888876544333 356788
Q ss_pred CCEEEccCCCCCChhHHHHHHHc-----CCcCCEEEeccCCCCHHHHHHHH----hcCCCccEEEeccCCCCCHHH--HH
Q 009671 376 LERLALCGSDTVGDVEISCIAAK-----CVALKKLCIKSCPVSDHGMEALA----GGCPNLVKVKVKKCRAVTTEG--AD 444 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~l~~l~~~-----~~~L~~L~l~~~~i~~~~l~~l~----~~~~~L~~L~l~~c~~i~~~~--~~ 444 (529)
|++|++++|. +++.+...++.. +++|+.|+|++|.+++.++..+. ..+++|++|++.+|. ++..+ +.
T Consensus 246 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~ 323 (386)
T 2ca6_A 246 LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVD 323 (386)
T ss_dssp CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHH
T ss_pred cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHH
Confidence 8888888875 777665554432 67888888888888886444333 346888888888887 66554 45
Q ss_pred HHHhcCC
Q 009671 445 WLRARRE 451 (529)
Q Consensus 445 ~l~~~~~ 451 (529)
.+....+
T Consensus 324 ~l~~~l~ 330 (386)
T 2ca6_A 324 EIREVFS 330 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5555433
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=3.3e-19 Score=176.12 Aligned_cols=266 Identities=13% Similarity=0.117 Sum_probs=185.3
Q ss_pred HcCCCccEEecCCCCCCCHHHHHHHH---hcCCCCCEEEecCcccC------hHHHHH---HHhcCCCCCEEecCCccCC
Q 009671 138 QKCRNLTRLKLRACRELTDAGMSVFA---KNCKGLKKLSCGSCTFG------AKGMNA---VLDNCSTLEELSVKRLRGI 205 (529)
Q Consensus 138 ~~~~~L~~L~L~~~~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~------~~~l~~---~~~~~~~L~~L~l~~~~~~ 205 (529)
..+++|++|+|++| .++..+...+. ..+++|++|+|++|.+. +.++.. .+..+++|++|+++++. +
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 45788888888875 67776655543 35678888888886432 223332 23567888888888763 3
Q ss_pred CccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHh---hc---------CCc
Q 009671 206 TDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTD---RV---------TSL 273 (529)
Q Consensus 206 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~---------~~L 273 (529)
+..+.. .++..+..+++|++|++++|. +.......+.. .+ ++|
T Consensus 107 ~~~~~~------------------------~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 107 GPTAQE------------------------PLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp CTTTHH------------------------HHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHH------------------------HHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 332111 123445678899999998874 44333333332 33 889
Q ss_pred cEEEeeccccChHHHH----HhhcCCCCCeEEecCCCCCChhhHHHHHH----hCCCCcEEEecCcccCccChHHHH---
Q 009671 274 VEIHLERIQVTDVGLA----AISNCLDLEIMHLVKTPECTNLGLAAVAE----RCKLLRKLHIDGWKANRIGDEGLI--- 342 (529)
Q Consensus 274 ~~L~l~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~~~~~~l~~l~~----~~~~L~~L~L~~~~~~~i~~~~l~--- 342 (529)
++|++++|.+++.++. .+..+++|++|++++| .+++.++..+.. .+++|+.|+|++| .+++.+..
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n---~l~~~g~~~l~ 237 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN---TFTHLGSSALA 237 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS---CCHHHHHHHHH
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC---CCCcHHHHHHH
Confidence 9999999999866655 3456899999999998 677777555443 6799999999986 46554443
Q ss_pred HHHhcCccccceEeecccCcHHHHHHHHhc-----CCCCCEEEccCCCCCChhHHHHHH----HcCCcCCEEEeccCCCC
Q 009671 343 AVAKCCPNLQELVLIGVNPTRVSLEVLASN-----CQNLERLALCGSDTVGDVEISCIA----AKCVALKKLCIKSCPVS 413 (529)
Q Consensus 343 ~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~-----~~~L~~L~l~~~~~~~~~~l~~l~----~~~~~L~~L~l~~~~i~ 413 (529)
.....+++|++|+|++|.+++.+...+... +++|++|++++|. +++.++..+. .++++|+.|++++|+++
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 344567999999999999998876655432 8999999999985 7776544433 45799999999999988
Q ss_pred HHH--HHHHHhcCCCccEEEeccC
Q 009671 414 DHG--MEALAGGCPNLVKVKVKKC 435 (529)
Q Consensus 414 ~~~--l~~l~~~~~~L~~L~l~~c 435 (529)
+.+ +..+...++.++.+.+..-
T Consensus 317 ~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 317 EEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp TTSHHHHHHHHHHHHHTCCEECCC
T ss_pred cchhHHHHHHHHhhhcCcchhhhc
Confidence 766 5677666777666665443
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=4.7e-20 Score=191.22 Aligned_cols=385 Identities=13% Similarity=0.087 Sum_probs=213.0
Q ss_pred CceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcC
Q 009671 112 DVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNC 191 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~ 191 (529)
+++++|+++. ..++......+ ..+++|++|+++++ .++...... +..+++|++|++++|.+.... ...+..+
T Consensus 26 ~~L~~L~Ls~----n~l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSF----NKITYIGHGDL-RACANLQVLILKSS-RINTIEGDA-FYSLGSLEHLDLSDNHLSSLS-SSWFGPL 97 (549)
T ss_dssp TTCCEEECCS----SCCCEECSSTT-SSCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTSCCCSCC-HHHHTTC
T ss_pred CCccEEECcC----CccCccChhhh-hcCCcccEEECCCC-CcCccChhh-ccccccCCEEECCCCccCccC-HHHhccC
Confidence 6799999983 33332111122 45899999999986 554432222 346899999999999975432 2235689
Q ss_pred CCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcc-hhhhhcCCCCCeEeccccCCCchHHHHHHHhhc
Q 009671 192 STLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCF-GPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRV 270 (529)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 270 (529)
++|++|+++++. +........++ .+++|+.|++.++.....+ ...+..+++|++|+++++.- .... ......+
T Consensus 98 ~~L~~L~Ls~n~-l~~~~~~~~~~---~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~l~~l 171 (549)
T 2z81_A 98 SSLKYLNLMGNP-YQTLGVTSLFP---NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQ-SQSLKSI 171 (549)
T ss_dssp TTCCEEECTTCC-CSSSCSSCSCT---TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CEEC-TTTTTTC
T ss_pred CCCcEEECCCCc-ccccchhhhhh---ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc-cccC-hhhhhcc
Confidence 999999999873 43322222222 6789999999887633333 34678899999999998652 2111 1122356
Q ss_pred CCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhH--HHHHHhCCCCcEEEecCcccCccChHHHHHHH---
Q 009671 271 TSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGL--AAVAERCKLLRKLHIDGWKANRIGDEGLIAVA--- 345 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l--~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~--- 345 (529)
++|+.|++..+.+.......+..+++|+.|+++++. ++...+ ..+...+++|+.|+++++. +.+.....+.
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~l~~~~ 247 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV---LTDESFNELLKLL 247 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE---EEHHHHHHHHGGG
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc---cchhHHHHHHHHh
Confidence 789999999988776655555678999999998873 222100 0011123455555554432 2222222221
Q ss_pred -----------------------------------------------------------hcCccccceEeecccCcHHHH
Q 009671 346 -----------------------------------------------------------KCCPNLQELVLIGVNPTRVSL 366 (529)
Q Consensus 346 -----------------------------------------------------------~~~~~L~~L~L~~~~i~~~~l 366 (529)
...++|+.|++++|.+.....
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~ 327 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH
Confidence 122345555555554432221
Q ss_pred HHHHhcCCCCCEEEccCCCCCChhHHHHH--HHcCCcCCEEEeccCCCCHHHH-HHHHhcCCCccEEEeccCCCCCHHHH
Q 009671 367 EVLASNCQNLERLALCGSDTVGDVEISCI--AAKCVALKKLCIKSCPVSDHGM-EALAGGCPNLVKVKVKKCRAVTTEGA 443 (529)
Q Consensus 367 ~~l~~~~~~L~~L~l~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~i~~~~l-~~l~~~~~~L~~L~l~~c~~i~~~~~ 443 (529)
.+...+++|++|++++|. +++...... ...+++|+.|++++|.+++... ......+++|+.|++++|. ++. +
T Consensus 328 -~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--l 402 (549)
T 2z81_A 328 -SFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHP--M 402 (549)
T ss_dssp -HHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCC--C
T ss_pred -HHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-Ccc--C
Confidence 222456777777777664 443222111 2345677777777777655332 1223457777777777775 441 1
Q ss_pred HHHHhcCCcE-EEEeccC-----------ccccccccCCccccCCccCC-CcccccCccccCCCchhHHHHHhhhhcccc
Q 009671 444 DWLRARREYV-VVNLDSG-----------EAEHQDASDGGVQENGIEFP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRS 510 (529)
Q Consensus 444 ~~l~~~~~~l-~l~l~~~-----------~~~~ld~~~~~~~~~~~~~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~ 510 (529)
.......+.+ .+.+..+ .+..+|+++|.+......+| ++.+.+++|... .... ...+..|+.|+
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~ 479 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMK 479 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEE
T ss_pred ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC--cccCccCCEEe
Confidence 0000011111 2222221 23444555555544333344 666666666533 1111 13455677777
Q ss_pred ccccccccccCC
Q 009671 511 LVACTLRRWSSG 522 (529)
Q Consensus 511 l~~~~~~~~~~~ 522 (529)
|++|.+...+++
T Consensus 480 Ls~N~l~~~~~~ 491 (549)
T 2z81_A 480 ISRNQLKSVPDG 491 (549)
T ss_dssp CCSSCCCCCCTT
T ss_pred cCCCccCCcCHH
Confidence 777777666553
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=4.1e-22 Score=214.20 Aligned_cols=382 Identities=14% Similarity=0.077 Sum_probs=173.4
Q ss_pred hccCCceeEEEeeccCCccccCHHHHH--HHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHH
Q 009671 108 FSRFDVVTKLALKCDRRSVSVGDDALI--LISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMN 185 (529)
Q Consensus 108 ~~~~~~l~~L~l~~~~~~~~~~~~~l~--~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~ 185 (529)
+..+++|++|+++ .+.+...... .+ ..+++|++|+++++ .+.......+...+++|++|++++|.++.....
T Consensus 96 ~~~l~~L~~L~Ls----~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 96 FKCSASLTSLDLS----RNSLSGPVTTLTSL-GSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp CCCCTTCCEEECC----SSEEEEEGGGGGGG-GGCTTCCEEECCSS-EEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred hccCCCCCEEECC----CCcCCCcCCChHHH-hCCCCCCEEECcCC-ccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence 4455667777776 3333321111 23 33677777777764 221111111113466777777777765432221
Q ss_pred H--HHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHH
Q 009671 186 A--VLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLL 263 (529)
Q Consensus 186 ~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l 263 (529)
. .+..+++|++|++.++.-...... ..+++|+.|++..+.....++. +..+++|++|++++|.- ... +
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l-~~~-~ 239 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVDV-------SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL-SGD-F 239 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCBC-------TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC-CSC-H
T ss_pred hhhhhccCCCCCEEECCCCcccccCCc-------ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC-CCc-c
Confidence 1 245667777777766532111111 1456666666665544443433 55566666666666432 111 1
Q ss_pred HHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHH
Q 009671 264 QLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIA 343 (529)
Q Consensus 264 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~ 343 (529)
......+++|++|++++|.++..... ..+++|++|+++++. ++...-..+...+++|++|++++|........
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~---- 312 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP---- 312 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCG----
T ss_pred cHHHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccch----
Confidence 22233455566666666544321110 134455555554441 11000000111124444444444332211111
Q ss_pred HHhcCccccceEeecccCcHHHHHHHHhcCCC-------------------------CCEEEccCCCCCChhHHHHHHH-
Q 009671 344 VAKCCPNLQELVLIGVNPTRVSLEVLASNCQN-------------------------LERLALCGSDTVGDVEISCIAA- 397 (529)
Q Consensus 344 ~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~-------------------------L~~L~l~~~~~~~~~~l~~l~~- 397 (529)
....+++|++|++++|.+........+..+++ |++|++++|. ++......+..
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~ 391 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQN 391 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE-EEEECCTTTTCS
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC-cCCCcChhhhhc
Confidence 11234444444444444331111111134444 4555544442 11111111110
Q ss_pred cCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcE-EEEeccC--------------cc
Q 009671 398 KCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYV-VVNLDSG--------------EA 462 (529)
Q Consensus 398 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l-~l~l~~~--------------~~ 462 (529)
.+++|++|++++|.+++.....+. .+++|+.|++++|. ++......+.. .+.+ .+.+..+ .+
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNY-LSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSE-EESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred ccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCc-ccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 145677777777765433222333 57788888888876 43221112222 1222 2333221 24
Q ss_pred ccccccCCccccCC----ccCC-CcccccCccccCCCchhHHHHHhhhhccccccccccc
Q 009671 463 EHQDASDGGVQENG----IEFP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLR 517 (529)
Q Consensus 463 ~~ld~~~~~~~~~~----~~~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 517 (529)
+.+++++|.+.... ..++ ++.+++++|.... ....+...+..|+.|+|.+|.+.
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCE
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC-cCChHHhcCCCCCEEECCCCccc
Confidence 45666666665322 1123 6677777776432 23334455667777788877776
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=3.7e-22 Score=209.56 Aligned_cols=138 Identities=20% Similarity=0.051 Sum_probs=70.1
Q ss_pred HHHhccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHH
Q 009671 105 PSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGM 184 (529)
Q Consensus 105 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l 184 (529)
+..+..+++|++|+++ .+.+.......+ ..+++|++|+++++ .+...... .+..+++|++|++++|.+.....
T Consensus 50 ~~~~~~l~~L~~L~Ls----~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~ 122 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLT----RCQIYWIHEDTF-QSQHRLDTLVLTAN-PLIFMAET-ALSGPKALKHLFFIQTGISSIDF 122 (606)
T ss_dssp TTTSTTCTTCSEEECT----TCCCCEECTTTT-TTCTTCCEEECTTC-CCSEECTT-TTSSCTTCCEEECTTSCCSCGGG
T ss_pred hhHhccCccceEEECC----CCccceeChhhc-cCccccCeeeCCCC-cccccChh-hhcccccccEeeccccCcccCCc
Confidence 4455666777777776 222222111112 24667777777764 33322111 12346777777777776543211
Q ss_pred HHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCC--eEecccc
Q 009671 185 NAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLR--TLKLFRC 255 (529)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~ 255 (529)
. .+..+++|++|+++++. +......... .+++|+.|++.++......+..+..+++|+ .|+++++
T Consensus 123 ~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 123 I-PLHNQKTLESLYLGSNH-ISSIKLPKGF----PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp S-CCTTCTTCCEEECCSSC-CCCCCCCTTC----CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred c-hhccCCcccEEECCCCc-ccccCccccc----CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 1 13466777777777652 3322222211 356666666666544444444455555555 4555443
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=5.3e-19 Score=179.09 Aligned_cols=320 Identities=14% Similarity=0.134 Sum_probs=193.5
Q ss_pred hccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHH
Q 009671 108 FSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAV 187 (529)
Q Consensus 108 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~ 187 (529)
+..+++|++|+++ ...+.+.. . ...+++|++|+++++ .+..... +..+++|++|++++|.+.... .
T Consensus 64 ~~~l~~L~~L~Ls----~n~l~~~~--~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~--~- 129 (466)
T 1o6v_A 64 VEYLNNLTQINFS----NNQLTDIT--P-LKNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNNQITDID--P- 129 (466)
T ss_dssp GGGCTTCCEEECC----SSCCCCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCCG--G-
T ss_pred hhhhcCCCEEECC----CCccCCch--h-hhccccCCEEECCCC-ccccChh---hcCCCCCCEEECCCCCCCCCh--H-
Confidence 4567889999998 33333211 1 245789999999886 4433221 456889999999998865332 1
Q ss_pred HhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHH
Q 009671 188 LDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVT 267 (529)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~ 267 (529)
+..+++|++|++.++. +... .. + ..+++|+.|.+..... ... .+..+++|+.|++++|.-.... ..
T Consensus 130 ~~~l~~L~~L~l~~n~-l~~~--~~-~---~~l~~L~~L~l~~~~~--~~~-~~~~l~~L~~L~l~~n~l~~~~----~l 195 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNT-ISDI--SA-L---SGLTSLQQLSFGNQVT--DLK-PLANLTTLERLDISSNKVSDIS----VL 195 (466)
T ss_dssp GTTCTTCSEEEEEEEE-ECCC--GG-G---TTCTTCSEEEEEESCC--CCG-GGTTCTTCCEEECCSSCCCCCG----GG
T ss_pred HcCCCCCCEEECCCCc-cCCC--hh-h---ccCCcccEeecCCccc--Cch-hhccCCCCCEEECcCCcCCCCh----hh
Confidence 5678999999998763 3221 11 1 1567777777753222 122 2567788888888876522111 13
Q ss_pred hhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhc
Q 009671 268 DRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKC 347 (529)
Q Consensus 268 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~ 347 (529)
..+++|+.|++++|.+++... ++.+++|+.|+++++. +...+ . ...+++|+.|++++|....+.. ...
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~------~~~ 263 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG--T-LASLTNLTDLDLANNQISNLAP------LSG 263 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG--G-GGGCTTCSEEECCSSCCCCCGG------GTT
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccch--h-hhcCCCCCEEECCCCccccchh------hhc
Confidence 456778888888877665432 5567788888887763 33321 1 2346788888887765433322 345
Q ss_pred CccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCc
Q 009671 348 CPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNL 427 (529)
Q Consensus 348 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 427 (529)
+++|+.|++++|.+..... ...+++|+.|++++|. +++... ...+++|+.|++++|.+++... ...+++|
T Consensus 264 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L 333 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP---LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNNISDISP---VSSLTKL 333 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred CCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCcCCCchh---hccCccC
Confidence 7788888888877665332 3567778888887774 332211 3457778888888887665332 2357788
Q ss_pred cEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccCC--ccCC-CcccccCccc
Q 009671 428 VKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENG--IEFP-PQMVQPSVAS 490 (529)
Q Consensus 428 ~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~--~~~p-l~~l~l~~c~ 490 (529)
+.|++.+|. ++.. ..+. ....+..+++++|.+.+.. ..++ ++.+.+++|.
T Consensus 334 ~~L~l~~n~-l~~~--~~l~----------~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 334 QRLFFYNNK-VSDV--SSLA----------NLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CEEECCSSC-CCCC--GGGT----------TCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CEeECCCCc-cCCc--hhhc----------cCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 888888776 5542 1111 1133555556666654332 1122 5666666665
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=2.7e-21 Score=202.98 Aligned_cols=206 Identities=17% Similarity=0.138 Sum_probs=104.8
Q ss_pred ccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEE
Q 009671 222 SLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMH 301 (529)
Q Consensus 222 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 301 (529)
+|+.+.+.++.........+..+++|++|+++++.- .. +......+++|++|++++|.++......+..+++|+.|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 444555555444444444566778888888877642 11 111123456788888887777766555566777777777
Q ss_pred ecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEc
Q 009671 302 LVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLAL 381 (529)
Q Consensus 302 L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l 381 (529)
++++........ .....+++|+.|++++|....+.. .......+++|++|++++|.+.......+ ..+++|++|++
T Consensus 332 l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l 407 (606)
T 3t6q_A 332 IKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDL 407 (606)
T ss_dssp CCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEECTTTT-TTCTTCSEEEC
T ss_pred CCCCCcccccch-hhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcCCHHHh-cCCccCCeEEC
Confidence 777632111111 112235677777776654322210 00112345666666666665544322222 45566666666
Q ss_pred cCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 382 CGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 382 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
+++. ++..........+++|+.|++++|.++......+. .+++|++|++++|.
T Consensus 408 ~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 408 AFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNH 460 (606)
T ss_dssp TTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCB
T ss_pred CCCc-CCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCC
Confidence 6553 22111111122345566666666554433222222 35555666655554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=6.6e-21 Score=196.21 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=77.5
Q ss_pred CCccEEEeeccccChHHHHHh-----hcCCCCCeEEecCCCC-CChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHH
Q 009671 271 TSLVEIHLERIQVTDVGLAAI-----SNCLDLEIMHLVKTPE-CTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAV 344 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~L~~~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~ 344 (529)
++|+.|++++|.+++.....+ ..+++|+.+++.++.. +....+..+.. ..+|+.|+++++....+..
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~------ 319 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLC------ 319 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCCC------
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCccccccc------
Confidence 356666666554442222222 3455555555555421 11122222221 2356666665543222110
Q ss_pred HhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCCh-hHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhc
Q 009671 345 AKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGD-VEISCIAAKCVALKKLCIKSCPVSDHGMEALAGG 423 (529)
Q Consensus 345 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 423 (529)
...+++|++|++++|.+++.....+ ..+++|++|++++|. ++. ..+......+++|+.|++++|.+++.........
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 1245666777777666665333333 456667777776664 332 2233334456667777777666554211112224
Q ss_pred CCCccEEEeccCCCCC
Q 009671 424 CPNLVKVKVKKCRAVT 439 (529)
Q Consensus 424 ~~~L~~L~l~~c~~i~ 439 (529)
+++|+.|++++|. ++
T Consensus 398 l~~L~~L~Ls~N~-l~ 412 (520)
T 2z7x_B 398 TKSLLSLNMSSNI-LT 412 (520)
T ss_dssp CTTCCEEECCSSC-CC
T ss_pred CccCCEEECcCCC-CC
Confidence 5666666666665 44
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=9.4e-22 Score=211.43 Aligned_cols=383 Identities=16% Similarity=0.066 Sum_probs=222.5
Q ss_pred HhccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHH--HHhcCCCCCEEEecCcccChHHH
Q 009671 107 LFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSV--FAKNCKGLKKLSCGSCTFGAKGM 184 (529)
Q Consensus 107 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~--l~~~~~~L~~L~L~~~~~~~~~l 184 (529)
.+..+++|++|+++. +.+.......+...+++|++|+++++ .++...... ....+++|++|++++|.+....-
T Consensus 121 ~l~~l~~L~~L~Ls~----n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSS----NTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp GGGGCTTCCEEECCS----SEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred HHhCCCCCCEEECcC----CccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 567788999999983 33221111111134788999999885 554333222 24568899999999888532110
Q ss_pred HHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHH
Q 009671 185 NAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQ 264 (529)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 264 (529)
...+++|++|++.++..... +.. + ..+++|+.|++.++.....++..+..+++|++|++++|.......
T Consensus 196 ---~~~l~~L~~L~Ls~n~l~~~--~~~-l---~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-- 264 (768)
T 3rgz_A 196 ---VSRCVNLEFLDVSSNNFSTG--IPF-L---GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-- 264 (768)
T ss_dssp ---CTTCTTCCEEECCSSCCCSC--CCB-C---TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCC--
T ss_pred ---cccCCcCCEEECcCCcCCCC--Ccc-c---ccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccC--
Confidence 14788899999987742221 111 2 267888888888877766677777788888888888764211000
Q ss_pred HHHhhcCCccEEEeecc-------------------------ccChHHHHHhhcCCCCCeEEecCCCCCC-hhhHHHHHH
Q 009671 265 LVTDRVTSLVEIHLERI-------------------------QVTDVGLAAISNCLDLEIMHLVKTPECT-NLGLAAVAE 318 (529)
Q Consensus 265 ~l~~~~~~L~~L~l~~~-------------------------~l~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~l~~l~~ 318 (529)
.. .+++|++|++++| .++......++.+++|++|+++++. +. ...... ..
T Consensus 265 ~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~-l~ 340 (768)
T 3rgz_A 265 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDT-LL 340 (768)
T ss_dssp CC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHH-HT
T ss_pred cc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHH-Hh
Confidence 00 3344555555544 4333333334445555555555542 11 111111 22
Q ss_pred hCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHh-cCCCCCEEEccCCCCCChhHHHHHHH
Q 009671 319 RCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLAS-NCQNLERLALCGSDTVGDVEISCIAA 397 (529)
Q Consensus 319 ~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~l~~l~~ 397 (529)
.+++|+.|++++|.........+ ....++|+.|++++|.++......+.. .+++|++|++++|. ++.. +.....
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~p~~l~ 415 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGK-IPPTLS 415 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTH---HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE-EEEE-CCGGGG
T ss_pred cCCCCCEEeCcCCccCccccHHH---HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc-cccc-cCHHHh
Confidence 35566666665553321111111 111126666666666554332222211 26789999999885 3321 112234
Q ss_pred cCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccC--------------ccc
Q 009671 398 KCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSG--------------EAE 463 (529)
Q Consensus 398 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~--------------~~~ 463 (529)
.+++|+.|++++|.+++.....+. .+++|+.|++.+|. ++......+........+.+..+ .+.
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCc-ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 689999999999986544333444 68899999999998 55322222222211223444432 256
Q ss_pred cccccCCccccCC----ccCC-CcccccCccccCCCchhHHHHHhhhhccccccccccc
Q 009671 464 HQDASDGGVQENG----IEFP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLR 517 (529)
Q Consensus 464 ~ld~~~~~~~~~~----~~~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 517 (529)
.+++++|.+.... ..++ ++.+.+++|.... ........+..|+.|+|.+|.+.
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGGCTTCCEEECCSSEEE
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccC-cCCHHHcCCCCCCEEECCCCccC
Confidence 7889999987443 2344 8999999997542 23344567789999999999987
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=1.3e-20 Score=197.78 Aligned_cols=61 Identities=13% Similarity=-0.038 Sum_probs=37.9
Q ss_pred ccccccccCCccccCCc----cCC-CcccccCccccCCCchhHHHHHhhhhccccccccccccccCC
Q 009671 461 EAEHQDASDGGVQENGI----EFP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRRWSSG 522 (529)
Q Consensus 461 ~~~~ld~~~~~~~~~~~----~~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 522 (529)
.++.+++++|.+.+... .++ ++.+.+++|... +........+..|+.|+|++|.+..+|.+
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC-CcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 35666777777654432 233 777777777533 23334445566777888888887777764
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.3e-20 Score=204.56 Aligned_cols=114 Identities=12% Similarity=0.053 Sum_probs=60.4
Q ss_pred CCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccCC--
Q 009671 399 CVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENG-- 476 (529)
Q Consensus 399 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~-- 476 (529)
..+++.|++++|.+++.........+++|+.|++++|. ++........ .....+..+++++|.+....
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---------~~~~~L~~L~Ls~N~l~~~~~~ 469 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTP---------SENPSLEQLFLGENMLQLAWET 469 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSS---------CSCTTCCBCEEESCCCSSSCCS
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCc-cccccccccc---------ccCCccccccCCCCcccccccc
Confidence 34566666666665543333333467888888888876 4421000000 11234556666666654211
Q ss_pred -------ccCC-CcccccCccccCCCchhHHHHHhhhhccccccccccccccCCC
Q 009671 477 -------IEFP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRRWSSGN 523 (529)
Q Consensus 477 -------~~~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 523 (529)
..++ ++.+.+++|... +........+..|+.|+|++|++...|++.
T Consensus 470 ~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 470 ELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp CCCSSCSSCBCCEECCCCCHHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred ccchhhhcCcccccEEECCCCccc-ccChhHccchhhhheeECCCCCCCccChhh
Confidence 1123 666667666433 223333345567777777777777666553
No 24
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=2.6e-17 Score=160.83 Aligned_cols=264 Identities=13% Similarity=0.075 Sum_probs=163.6
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHH---HHHHhcCC-CCCEEecCCccCCCccccccccCCCcccCc
Q 009671 147 KLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGM---NAVLDNCS-TLEELSVKRLRGITDGAAAEPIGPGVAASS 222 (529)
Q Consensus 147 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l---~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 222 (529)
+++.. .++. .+..+....++|++|++++|.+++.+. ...+..++ +|++|+++++ .++..+...
T Consensus 4 ~ls~n-~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~---------- 70 (362)
T 3goz_A 4 KLTLH-PGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE---------- 70 (362)
T ss_dssp ECCCC-TTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHH----------
T ss_pred ccccc-cchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHH----------
Confidence 44442 3432 344455555669999999998755443 33455677 8999999876 343322111
Q ss_pred cchhhccccccCCcchhhhhc-CCCCCeEeccccCCCchH---HHHHHHhhc-CCccEEEeeccccChHHHHHhh----c
Q 009671 223 LKTVCLKELYNGQCFGPLIIG-AKNLRTLKLFRCSGDWDK---LLQLVTDRV-TSLVEIHLERIQVTDVGLAAIS----N 293 (529)
Q Consensus 223 L~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~---~l~~l~~~~-~~L~~L~l~~~~l~~~~~~~l~----~ 293 (529)
+...+.. +++|++|++++|. +.+. .+......+ ++|++|++++|.+++.+...+. .
T Consensus 71 --------------l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 135 (362)
T 3goz_A 71 --------------LVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135 (362)
T ss_dssp --------------HHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTT
T ss_pred --------------HHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHh
Confidence 1122233 3888888888875 3322 233333334 6788888888887776665543 2
Q ss_pred -CCCCCeEEecCCCCCChhhHHHHH---HhCC-CCcEEEecCcccCccChHHHHHHHhcC-ccccceEeecccCcHHHHH
Q 009671 294 -CLDLEIMHLVKTPECTNLGLAAVA---ERCK-LLRKLHIDGWKANRIGDEGLIAVAKCC-PNLQELVLIGVNPTRVSLE 367 (529)
Q Consensus 294 -~~~L~~L~L~~~~~~~~~~l~~l~---~~~~-~L~~L~L~~~~~~~i~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~l~ 367 (529)
+++|++|++++| .+++.+...+. ...+ +|++|+|++|.........+......+ ++|++|++++|.+++.+..
T Consensus 136 ~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~ 214 (362)
T 3goz_A 136 LPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA 214 (362)
T ss_dssp SCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred CCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH
Confidence 358888888877 45554444432 2344 788888888765555555555555556 4888888888887775544
Q ss_pred HHH----hcCCCCCEEEccCCCCCChhHHHHH---HHcCCcCCEEEeccCC---CCHHHHHHHHhcC---CCccEEEecc
Q 009671 368 VLA----SNCQNLERLALCGSDTVGDVEISCI---AAKCVALKKLCIKSCP---VSDHGMEALAGGC---PNLVKVKVKK 434 (529)
Q Consensus 368 ~l~----~~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~---i~~~~l~~l~~~~---~~L~~L~l~~ 434 (529)
.+. ..+++|++|++++|. +++.+...+ ...+++|+.|++++|. +++.++..+...+ ++|+.|++++
T Consensus 215 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 215 ELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 332 224578888888774 666544333 3446778888888876 7777777766544 3566777777
Q ss_pred CCCCCHH
Q 009671 435 CRAVTTE 441 (529)
Q Consensus 435 c~~i~~~ 441 (529)
+. +.+.
T Consensus 294 N~-l~~~ 299 (362)
T 3goz_A 294 KE-IHPS 299 (362)
T ss_dssp CB-CCGG
T ss_pred Cc-CCCc
Confidence 76 6554
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=3.2e-19 Score=189.79 Aligned_cols=281 Identities=16% Similarity=0.103 Sum_probs=131.5
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVA 219 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (529)
+++|++|+++++ .++..... .+..+++|++|++++|.+.... ...+..+++|++|++.++. +..... ..+ ..
T Consensus 48 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~---~~ 119 (680)
T 1ziw_A 48 YSQLTSLDVGFN-TISKLEPE-LCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNS-IQKIKN-NPF---VK 119 (680)
T ss_dssp GTTCSEEECCSS-CCCCCCTT-HHHHCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCS-CTT---TT
T ss_pred CCcCcEEECCCC-ccCccCHH-HHhcccCcCEEECCCCccCccC-hhhhccCCCCCEEECCCCc-cCccCh-hHc---cc
Confidence 566666666653 33222111 1224666666666666543211 0113356666666666542 221110 011 14
Q ss_pred cCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHH-hhcCCccEEEeeccccChHHHHHhhcCC---
Q 009671 220 ASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVT-DRVTSLVEIHLERIQVTDVGLAAISNCL--- 295 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~--- 295 (529)
+++|+.|++.++......+..+..+++|++|+++++.- .......+. ..+++|+.|++++|.++......+..++
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhh
Confidence 55666666665544444444445566666666665431 111111111 1235566666666655443333333344
Q ss_pred ------------------------CCCeEEecCCCCCChhhHHHHHH-hCCCCcEEEecCcccCccChHHHHHHHhcCcc
Q 009671 296 ------------------------DLEIMHLVKTPECTNLGLAAVAE-RCKLLRKLHIDGWKANRIGDEGLIAVAKCCPN 350 (529)
Q Consensus 296 ------------------------~L~~L~L~~~~~~~~~~l~~l~~-~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~ 350 (529)
+|+.|+++++. +.......+.. ..++|+.|++++|....+.... ...+++
T Consensus 199 ~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~ 273 (680)
T 1ziw_A 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS----FAWLPQ 273 (680)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT----TTTCTT
T ss_pred hhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhHhhccCcCCCCEEECCCCCcCccCccc----ccCccc
Confidence 45555555441 11111111111 0134666666655433332221 234566
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHH-------HHHcCCcCCEEEeccCCCCHHHHHHHHhc
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISC-------IAAKCVALKKLCIKSCPVSDHGMEALAGG 423 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~-------l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 423 (529)
|++|++++|.+.......+ ..+++|+.|++.++.......... ....+++|++|++++|.++......+ ..
T Consensus 274 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~ 351 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TG 351 (680)
T ss_dssp CCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-TT
T ss_pred ccEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh-cc
Confidence 6666666666554332223 456667777766542111000000 11246778888888877654322223 35
Q ss_pred CCCccEEEeccCC
Q 009671 424 CPNLVKVKVKKCR 436 (529)
Q Consensus 424 ~~~L~~L~l~~c~ 436 (529)
+++|++|++++|.
T Consensus 352 l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 352 LINLKYLSLSNSF 364 (680)
T ss_dssp CTTCCEEECTTCB
T ss_pred ccCCcEEECCCCc
Confidence 7778888887765
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=8.2e-20 Score=198.39 Aligned_cols=381 Identities=14% Similarity=0.053 Sum_probs=211.0
Q ss_pred CCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhc
Q 009671 111 FDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDN 190 (529)
Q Consensus 111 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~ 190 (529)
.+++++|+++. +.++......+ ..+++|+.|+++++........ ..+..+++|++|+|++|.+.... ...+..
T Consensus 23 p~~l~~LdLs~----N~i~~i~~~~~-~~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSF----NYIRTVTASSF-PFLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSKIYFLH-PDAFQG 95 (844)
T ss_dssp CTTCCEEEEES----CCCCEECSSSC-SSCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTCCCCEEC-TTSSCS
T ss_pred CCCcCEEECCC----CcCCccChhHC-cccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCCcCcccC-HhHccC
Confidence 36788999983 33322111112 3578899999988633322111 12346889999999998864321 223457
Q ss_pred CCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcc-hhhhhcCCCCCeEeccccCC--CchHHHHHHH
Q 009671 191 CSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCF-GPLIIGAKNLRTLKLFRCSG--DWDKLLQLVT 267 (529)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~--~~~~~l~~l~ 267 (529)
+++|++|++.++. +....... .....+++|+.|++..+...... ...+..+++|++|+++++.- .....+..+.
T Consensus 96 l~~L~~L~Ls~n~-l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 96 LFHLFELRLYFCG-LSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSSCCCEECTTCC-CSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CcccCEeeCcCCC-CCcccccC--ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 8899999998873 33211111 01126788899988887654433 35678889999999988642 1222333332
Q ss_pred hhcCCccEEEeeccccChHHHHHhhcCCC------CCeEEecCCCCCChhhHH---------------------------
Q 009671 268 DRVTSLVEIHLERIQVTDVGLAAISNCLD------LEIMHLVKTPECTNLGLA--------------------------- 314 (529)
Q Consensus 268 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~------L~~L~L~~~~~~~~~~l~--------------------------- 314 (529)
. ++|+.|+++.|.+.......++.+++ |+.|+++++. ++.....
T Consensus 173 ~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 173 G--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp H--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred C--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccc
Confidence 1 56888888777665533333333333 7777777652 1111000
Q ss_pred ---------HHHH-hCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCC
Q 009671 315 ---------AVAE-RCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGS 384 (529)
Q Consensus 315 ---------~l~~-~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 384 (529)
.+.. ..++|+.|+++++....+... ....+++|+.|++++|.+.......+ ..+++|++|++++|
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR----VFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYN 324 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC----CSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChh----hhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCC
Confidence 0000 125788888877654333221 12356788888888887765433333 56778888888877
Q ss_pred CCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcE-EEEeccC---
Q 009671 385 DTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYV-VVNLDSG--- 460 (529)
Q Consensus 385 ~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l-~l~l~~~--- 460 (529)
. ++.... .....+++|+.|++++|.++......+ ..+++|+.|++++|. ++... ..+.+ .+.+..+
T Consensus 325 ~-l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~i~------~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 325 L-LGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNA-LTTIH------FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp C-CSCCCS-CSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCC-SCCCS------SCCSCSEEEEESCCCC
T ss_pred C-CCccCH-HHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCC-CCccc------CCCCcchhccCCCCcc
Confidence 4 222110 112246778888888887544322222 357788888888776 44210 01111 2222222
Q ss_pred -------ccccccccCCccccCCc-----cCC-CcccccCccccCCCchhHHHHHhhhhccccccccccccc
Q 009671 461 -------EAEHQDASDGGVQENGI-----EFP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRRW 519 (529)
Q Consensus 461 -------~~~~ld~~~~~~~~~~~-----~~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 519 (529)
.+..+++++|.+..... .+| ++.+.++++....-........+.+|+.|+|.+|.+...
T Consensus 395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 23445566666655332 344 666766666533211111222355777777777776543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.4e-19 Score=182.99 Aligned_cols=285 Identities=13% Similarity=0.107 Sum_probs=134.7
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHH-HHHhcCCCCCEEecCCccCCCccccccccCCCc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMN-AVLDNCSTLEELSVKRLRGITDGAAAEPIGPGV 218 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (529)
+++|++|+++++ .++..... .+..+++|++|++++|.++..... ..+..+++|++|+++++. +........+ .
T Consensus 78 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~---~ 151 (455)
T 3v47_A 78 LSSLIILKLDYN-QFLQLETG-AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFF---L 151 (455)
T ss_dssp CTTCCEEECTTC-TTCEECTT-TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGG---G
T ss_pred cccCCEEeCCCC-ccCccChh-hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCccccc---C
Confidence 556666666654 33222111 122356666666666665432211 113445666666666542 2221111101 1
Q ss_pred ccCccchhhccccccCCcchhhhhcC--CCCCeEeccccCCCc--hHHHHH----HHhhcCCccEEEeeccccChHHHHH
Q 009671 219 AASSLKTVCLKELYNGQCFGPLIIGA--KNLRTLKLFRCSGDW--DKLLQL----VTDRVTSLVEIHLERIQVTDVGLAA 290 (529)
Q Consensus 219 ~~~~L~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~--~~~l~~----l~~~~~~L~~L~l~~~~l~~~~~~~ 290 (529)
.+++|+.|++..+......+..+..+ ++|+.|++.++.... ...+.. -...+++|++|++++|.++......
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 44556666665554433333322222 445555554433110 000000 0112355777777777776655444
Q ss_pred hhc---CCCCCeEEecCCCCCCh---------hhHHHHH-HhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEee
Q 009671 291 ISN---CLDLEIMHLVKTPECTN---------LGLAAVA-ERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLI 357 (529)
Q Consensus 291 l~~---~~~L~~L~L~~~~~~~~---------~~l~~l~-~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~ 357 (529)
+.. .++|+.|+++++..... .....+. -..++|+.|+++++....+... ....+++|++|+++
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS----VFSHFTDLEQLTLA 307 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT----TTTTCTTCCEEECT
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh----hcccCCCCCEEECC
Confidence 432 35666666665421100 0000000 0125677777766543333221 12345677777777
Q ss_pred cccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCC
Q 009671 358 GVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRA 437 (529)
Q Consensus 358 ~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 437 (529)
+|.+.......+ ..+++|++|++++|. ++..... ....+++|++|++++|.+++.....+. .+++|++|++.+|.
T Consensus 308 ~n~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~- 382 (455)
T 3v47_A 308 QNEINKIDDNAF-WGLTHLLKLNLSQNF-LGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQ- 382 (455)
T ss_dssp TSCCCEECTTTT-TTCTTCCEEECCSSC-CCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC-
T ss_pred CCcccccChhHh-cCcccCCEEECCCCc-cCCcChh-HhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCc-
Confidence 776665433333 456777777777663 3322111 123466777777777766544333333 46677777777765
Q ss_pred CC
Q 009671 438 VT 439 (529)
Q Consensus 438 i~ 439 (529)
++
T Consensus 383 l~ 384 (455)
T 3v47_A 383 LK 384 (455)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=1.3e-19 Score=188.71 Aligned_cols=86 Identities=14% Similarity=0.023 Sum_probs=37.4
Q ss_pred cCccccceEeecccCcHHH--HHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcC
Q 009671 347 CCPNLQELVLIGVNPTRVS--LEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGC 424 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~--l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~ 424 (529)
.+++|++|++++|.++... ...+ ..+++|++|++++|. ++..... ...+++|+.|++++|.++..........+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSD-FGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHH-HTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred cCCCCCEEeCcCCccCccccccccc-cccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCccccccchhhhhcC
Confidence 4455666666655554321 1112 455566666665553 1111000 12345555555555543322111112234
Q ss_pred CCccEEEeccCC
Q 009671 425 PNLVKVKVKKCR 436 (529)
Q Consensus 425 ~~L~~L~l~~c~ 436 (529)
++|+.|++++|.
T Consensus 421 ~~L~~L~l~~n~ 432 (570)
T 2z63_A 421 RNLIYLDISHTH 432 (570)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEeCcCCc
Confidence 555555555554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=8.8e-19 Score=177.17 Aligned_cols=329 Identities=10% Similarity=0.038 Sum_probs=178.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVA 219 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (529)
.++|++|+++++ .++..... .+..+++|++|++++|.+........+..+++|++|+++++. +.... ...+ ..
T Consensus 29 ~~~l~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~---~~ 101 (455)
T 3v47_A 29 PAHVNYVDLSLN-SIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLE-TGAF---NG 101 (455)
T ss_dssp CTTCCEEECCSS-CCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEEC-TTTT---TT
T ss_pred CCccCEEEecCC-ccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccC-hhhc---cC
Confidence 368999999985 55443222 234688999999999875321112234578999999998863 33221 1111 15
Q ss_pred cCccchhhccccccCCcchh--hhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcC--C
Q 009671 220 ASSLKTVCLKELYNGQCFGP--LIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNC--L 295 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~--~ 295 (529)
+++|+.|++.++......+. .+..+++|++|+++++.- .......+...+++|++|++++|.++......+..+ .
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 67788888877665543333 266778888888887642 111111224456778888888877665544444433 5
Q ss_pred CCCeEEecCCCCCChhh---H--HHH--HHhCCCCcEEEecCcccCccChHHHHHHHhc---------------------
Q 009671 296 DLEIMHLVKTPECTNLG---L--AAV--AERCKLLRKLHIDGWKANRIGDEGLIAVAKC--------------------- 347 (529)
Q Consensus 296 ~L~~L~L~~~~~~~~~~---l--~~l--~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~--------------------- 347 (529)
+|+.|+++++. +.... + ... ...+++|++|++++|. +.......+...
T Consensus 181 ~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 181 HFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG---FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp EEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC---CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccCc-ccccchhhccccccccccccceeeeEecCCCc---ccccchhhhhccccccceeeEeecccccccccc
Confidence 77788877663 22111 0 000 1124678889988764 443333333221
Q ss_pred -----------------CccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccC
Q 009671 348 -----------------CPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSC 410 (529)
Q Consensus 348 -----------------~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 410 (529)
.++|+.|++++|.+.......+ ..+++|++|++++|. +++..... ...+++|+.|++++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNE-INKIDDNA-FWGLTHLLKLNLSQN 333 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhc-ccCCCCCEEECCCCc-ccccChhH-hcCcccCCEEECCCC
Confidence 1355556665555544322222 456666666666653 32211111 123566666666666
Q ss_pred CCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccCCc----cCC-Ccccc
Q 009671 411 PVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENGI----EFP-PQMVQ 485 (529)
Q Consensus 411 ~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~~----~~p-l~~l~ 485 (529)
.++......+. .+++|++|++++|. ++......+. ..+.+..+++++|.+.+... .++ ++.+.
T Consensus 334 ~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~~~----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 334 FLGSIDSRMFE-NLDKLEVLDLSYNH-IRALGDQSFL----------GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp CCCEECGGGGT-TCTTCCEEECCSSC-CCEECTTTTT----------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCcChhHhc-CcccCCEEECCCCc-ccccChhhcc----------ccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 65443222222 46666666666665 4321111111 11335556666666654332 223 66677
Q ss_pred cCccccCCCc
Q 009671 486 PSVASSRNTR 495 (529)
Q Consensus 486 l~~c~~~~~~ 495 (529)
++++......
T Consensus 402 l~~N~l~~~~ 411 (455)
T 3v47_A 402 LHTNPWDCSC 411 (455)
T ss_dssp CCSSCBCCCT
T ss_pred ccCCCcccCC
Confidence 7776655443
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=3.7e-19 Score=181.02 Aligned_cols=312 Identities=13% Similarity=0.074 Sum_probs=210.6
Q ss_pred CceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcC
Q 009671 112 DVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNC 191 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~ 191 (529)
++++.|+++ ...++.-....+ ..+++|++|+|+++ .++...... +..+++|++|+|++|.+.... ...+..+
T Consensus 32 ~~l~~L~L~----~n~l~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~l 103 (477)
T 2id5_A 32 TETRLLDLG----KNRIKTLNQDEF-ASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSNRLKLIP-LGVFTGL 103 (477)
T ss_dssp TTCSEEECC----SSCCCEECTTTT-TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCSCC-TTSSTTC
T ss_pred CCCcEEECC----CCccceECHhHc-cCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCCcCCccC-cccccCC
Confidence 468889998 333332111122 34889999999985 554432222 346889999999999864321 1124578
Q ss_pred CCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcC
Q 009671 192 STLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVT 271 (529)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 271 (529)
++|++|+++++. +.... ...+ ..+++|+.|.+..+......+..+..+++|++|++.++.- .. ........++
T Consensus 104 ~~L~~L~Ls~n~-i~~~~-~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~-~~~~~l~~l~ 176 (477)
T 2id5_A 104 SNLTKLDISENK-IVILL-DYMF---QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TS-IPTEALSHLH 176 (477)
T ss_dssp TTCCEEECTTSC-CCEEC-TTTT---TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SS-CCHHHHTTCT
T ss_pred CCCCEEECCCCc-cccCC-hhHc---cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cc-cChhHhcccC
Confidence 999999998763 33211 1111 2678899999988766555556678899999999998742 22 1223446788
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccc
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNL 351 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L 351 (529)
+|+.|++.++.+.......+..+++|+.|+++++..+...... .. ...+|+.|++++|....+.... ...+++|
T Consensus 177 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L 250 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CL-YGLNLTSLSITHCNLTAVPYLA----VRHLVYL 250 (477)
T ss_dssp TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TT-TTCCCSEEEEESSCCCSCCHHH----HTTCTTC
T ss_pred CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-cc-cCccccEEECcCCcccccCHHH----hcCcccc
Confidence 9999999999887766666778999999999987544332211 11 2358999999998765555432 3568999
Q ss_pred cceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEE
Q 009671 352 QELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVK 431 (529)
Q Consensus 352 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~ 431 (529)
+.|++++|.++......+ ..+++|++|+++++. ++...... ...+++|+.|+|++|.++......+ ..+++|+.|+
T Consensus 251 ~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~ 326 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQ-LAVVEPYA-FRGLNYLRVLNVSGNQLTTLEESVF-HSVGNLETLI 326 (477)
T ss_dssp CEEECCSSCCCEECTTSC-TTCTTCCEEECCSSC-CSEECTTT-BTTCTTCCEEECCSSCCSCCCGGGB-SCGGGCCEEE
T ss_pred CeeECCCCcCCccChhhc-cccccCCEEECCCCc-cceECHHH-hcCcccCCEEECCCCcCceeCHhHc-CCCcccCEEE
Confidence 999999998876544334 678999999999885 44322111 2357999999999998765332222 3678999999
Q ss_pred eccCCCCCHHHHHHHHh
Q 009671 432 VKKCRAVTTEGADWLRA 448 (529)
Q Consensus 432 l~~c~~i~~~~~~~l~~ 448 (529)
+.+++-..+-.+.++..
T Consensus 327 l~~N~l~c~c~~~~~~~ 343 (477)
T 2id5_A 327 LDSNPLACDCRLLWVFR 343 (477)
T ss_dssp CCSSCEECSGGGHHHHT
T ss_pred ccCCCccCccchHhHHh
Confidence 99988444444455544
No 31
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=1.8e-16 Score=154.92 Aligned_cols=253 Identities=11% Similarity=0.031 Sum_probs=149.8
Q ss_pred HHHcCCCccEEecCCCCCCCHHHH---HHHHhcCC-CCCEEEecCcccChHHH---HHHHhcC-CCCCEEecCCccCCCc
Q 009671 136 ISQKCRNLTRLKLRACRELTDAGM---SVFAKNCK-GLKKLSCGSCTFGAKGM---NAVLDNC-STLEELSVKRLRGITD 207 (529)
Q Consensus 136 l~~~~~~L~~L~L~~~~~~~~~~l---~~l~~~~~-~L~~L~L~~~~~~~~~l---~~~~~~~-~~L~~L~l~~~~~~~~ 207 (529)
+....++|++|+++++ .+++.+. ...+..++ +|++|++++|.+++.+. ..++... ++|++|+++++. ++.
T Consensus 17 ~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~ 94 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSY 94 (362)
T ss_dssp HHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred HHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CCh
Confidence 3344556888888875 4554443 23334566 78888888887654433 3333333 788888887763 332
Q ss_pred cccccccCCCcccCccchhhccccccCCcchhhhhcC-CCCCeEeccccCCCchHHHHHHHh---h-cCCccEEEeeccc
Q 009671 208 GAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGA-KNLRTLKLFRCSGDWDKLLQLVTD---R-VTSLVEIHLERIQ 282 (529)
Q Consensus 208 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~l~~l~~---~-~~~L~~L~l~~~~ 282 (529)
.... .+...+..+ ++|++|++++|. +.+.....+.. . ..+|++|++++|.
T Consensus 95 ~~~~------------------------~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 95 KSSD------------------------ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp SCHH------------------------HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHH------------------------HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 1111 111223444 678888888764 33333333322 2 3578888888887
Q ss_pred cChHHHHHh----hcCC-CCCeEEecCCCCCChhhHHH---HHHhC-CCCcEEEecCcccCccChHHHHHHHhc-Ccccc
Q 009671 283 VTDVGLAAI----SNCL-DLEIMHLVKTPECTNLGLAA---VAERC-KLLRKLHIDGWKANRIGDEGLIAVAKC-CPNLQ 352 (529)
Q Consensus 283 l~~~~~~~l----~~~~-~L~~L~L~~~~~~~~~~l~~---l~~~~-~~L~~L~L~~~~~~~i~~~~l~~~~~~-~~~L~ 352 (529)
+++.+...+ ..++ +|++|++++| .+++.+... ....+ ++|+.|+|++|.........+...... .++|+
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence 776554443 3444 7888888877 444444333 33334 478888888765444333334433333 35788
Q ss_pred ceEeecccCcHHHHH---HHHhcCCCCCEEEccCCC--CCChhHHHHHHHc---CCcCCEEEeccCCCCHHH
Q 009671 353 ELVLIGVNPTRVSLE---VLASNCQNLERLALCGSD--TVGDVEISCIAAK---CVALKKLCIKSCPVSDHG 416 (529)
Q Consensus 353 ~L~L~~~~i~~~~l~---~l~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~---~~~L~~L~l~~~~i~~~~ 416 (529)
+|++++|.+++.+.. .+...+++|++|++++|. .+++.++..+... +++|+.|++++|.+.+..
T Consensus 229 ~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp EEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred EEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 888888877775443 333566778888887763 4666666666543 456777788888776653
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=1.4e-18 Score=184.91 Aligned_cols=280 Identities=13% Similarity=0.041 Sum_probs=160.3
Q ss_pred ccCccchhhccccccCCcchhhhhcCCCCCeEeccccCC-C---chHHHHHHHhhcCCccEEEeeccccChHHHHHhhcC
Q 009671 219 AASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSG-D---WDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNC 294 (529)
Q Consensus 219 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~---~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 294 (529)
.+++|+.|++.++......+..+..+++|++|++++|.. . ....+.. -..++|+.|++++|.++......+..+
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS--LAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG--GTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc--cccCcCceEECCCCCCCeEChhhhhCC
Confidence 455666666666555544455566677777777766531 0 0000000 012467777777777766555556677
Q ss_pred CCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHH-HHHHHhcC
Q 009671 295 LDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVS-LEVLASNC 373 (529)
Q Consensus 295 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-l~~l~~~~ 373 (529)
++|+.|+++++. +...-.......+++|+.|++++|....+....+ ..+++|+.|+++++.+.... ....+..+
T Consensus 405 ~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 405 GHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF----ALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT----TTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred CCCCEEeCCCCc-CccccCcccccCcccccEEecCCCCcceeChhhh----hcCcccccchhccccccccccCCcccccC
Confidence 888888887763 2211000122346788888888775444433222 34678888888877664321 11112567
Q ss_pred CCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHH-------HHhcCCCccEEEeccCCCCCHHHHHHH
Q 009671 374 QNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEA-------LAGGCPNLVKVKVKKCRAVTTEGADWL 446 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~-------l~~~~~~L~~L~l~~c~~i~~~~~~~l 446 (529)
++|+.|+++++. ++...- .....+++|+.|++++|.++...... ....+++|+.|++++|. ++.-....+
T Consensus 480 ~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~ 556 (680)
T 1ziw_A 480 RNLTILDLSNNN-IANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF 556 (680)
T ss_dssp TTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCCEEECCCCC-CCcCCh-hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc
Confidence 888888888774 332111 11235778888888888765421111 12357788888888876 542111111
Q ss_pred HhcCCcEEEEeccCccccccccCCccccCCc----cCC-CcccccCccccCCCchhHHHHHhhhhcccccccccccc
Q 009671 447 RARREYVVVNLDSGEAEHQDASDGGVQENGI----EFP-PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRR 518 (529)
Q Consensus 447 ~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~~----~~p-l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 518 (529)
. ....+..+|+++|.+..... .++ ++.+.++++....-....+...+..|+.++|.+|.+.+
T Consensus 557 ~----------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 557 K----------DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp T----------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred c----------cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 1 11346677788887764432 223 88888888865443333333367888999988876654
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=1.1e-18 Score=183.18 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=22.6
Q ss_pred CCCEEEecCcccChHHHHHHHhcCCCCCEEec
Q 009671 168 GLKKLSCGSCTFGAKGMNAVLDNCSTLEELSV 199 (529)
Q Consensus 168 ~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l 199 (529)
+|++|++++|.+........+..++.|+.+++
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccc
Confidence 67788888887765666666667777776665
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=171.98 Aligned_cols=376 Identities=12% Similarity=0.061 Sum_probs=194.7
Q ss_pred CceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcC
Q 009671 112 DVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNC 191 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~ 191 (529)
+++++|+++ ...+.......+ ..+++|++|+++++ .++..... .+..+++|++|++++|.++. +... .+
T Consensus 21 ~~L~~L~Ls----~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~--lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNIS----QNYISELWTSDI-LSLSKLRILIISHN-RIQYLDIS-VFKFNQELEYLDLSHNKLVK--ISCH--PT 89 (520)
T ss_dssp TTCSEEECC----SSCCCCCCHHHH-TTCTTCCEEECCSS-CCCEEEGG-GGTTCTTCCEEECCSSCCCE--EECC--CC
T ss_pred ccccEEECC----CCcccccChhhc-cccccccEEecCCC-ccCCcChH-HhhcccCCCEEecCCCceee--cCcc--cc
Confidence 678888887 333332222223 34778888888875 45432212 23457888888888887652 2211 57
Q ss_pred CCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCC--CeEeccccCC--Cc--hHHHHH
Q 009671 192 STLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNL--RTLKLFRCSG--DW--DKLLQL 265 (529)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~--~~~l~~ 265 (529)
++|++|+++++. +....++..++ .+++|+.|++.++.... ..+..+++| +.|++.++.. .. ...+..
T Consensus 90 ~~L~~L~L~~N~-l~~~~~p~~~~---~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 90 VNLKHLDLSFNA-FDALPICKEFG---NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp CCCSEEECCSSC-CSSCCCCGGGG---GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred CCccEEeccCCc-cccccchhhhc---cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc
Confidence 888888888763 33222211221 56677777776654433 233455666 7777776532 00 001110
Q ss_pred ----------------------HHhhcCCccEEEeeccc-------cChHHHHHhhcCCCCCeEEecCCCCCChhhHHHH
Q 009671 266 ----------------------VTDRVTSLVEIHLERIQ-------VTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAV 316 (529)
Q Consensus 266 ----------------------l~~~~~~L~~L~l~~~~-------l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l 316 (529)
....+++|+.|++++|. +.. .+..+..+++|+.|++.++ .++...+..+
T Consensus 163 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~ 240 (520)
T 2z7x_B 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS-ILAKLQTNPKLSNLTLNNI-ETTWNSFIRI 240 (520)
T ss_dssp CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH-HHHGGGGCTTCCEEEEEEE-EEEHHHHHHH
T ss_pred cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec-chhhhccccchhhcccccc-ccCHHHHHHH
Confidence 00124455566665543 211 2234556677777777665 3344433333
Q ss_pred HH--hCCCCcEEEecCcccC-ccChHHHHHHHhcCccccceEeecccCc--HHHHHHHH---------------------
Q 009671 317 AE--RCKLLRKLHIDGWKAN-RIGDEGLIAVAKCCPNLQELVLIGVNPT--RVSLEVLA--------------------- 370 (529)
Q Consensus 317 ~~--~~~~L~~L~L~~~~~~-~i~~~~l~~~~~~~~~L~~L~L~~~~i~--~~~l~~l~--------------------- 370 (529)
.. ..++|++|++++|... .+....+......+++|+.++++++.+. ...+..+.
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 320 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred HHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccch
Confidence 22 2457777777766432 1111000000034567777777776551 12232221
Q ss_pred hcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHH-HHHHHHhcCCCccEEEeccCCCCCH-HHHHHHHh
Q 009671 371 SNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDH-GMEALAGGCPNLVKVKVKKCRAVTT-EGADWLRA 448 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~~i~~-~~~~~l~~ 448 (529)
..+++|++|++++|. +++..... ...+++|+.|++++|.+++. .+......+++|+.|++++|. ++. ....
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~---- 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG---- 393 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC----
T ss_pred hhCCcccEEEeECCc-cChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccc----
Confidence 345566666666653 33211111 13456677777777766642 122222356677777777666 432 1000
Q ss_pred cCCcEEEEeccCccccccccCCccccCC-ccCC--CcccccCccccCCCchhHHHHHhhhhccccccccccccccCC
Q 009671 449 RREYVVVNLDSGEAEHQDASDGGVQENG-IEFP--PQMVQPSVASSRNTRSTSFKTRLGLLSGRSLVACTLRRWSSG 522 (529)
Q Consensus 449 ~~~~l~l~l~~~~~~~ld~~~~~~~~~~-~~~p--l~~l~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 522 (529)
.. -....+..+++++|.+.... ..+| ++.+++++|... .....+ ..+..|+.|+|.+|.+..+|.+
T Consensus 394 ~~------~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~-~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 394 DC------SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQV-VKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp SC------CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCCCCTT
T ss_pred hh------ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhh-hcCCCCCEEECCCCcCCccCHH
Confidence 00 01134566677777765332 2232 777888877644 222222 2677888888888888887765
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=4.8e-20 Score=192.10 Aligned_cols=180 Identities=12% Similarity=0.006 Sum_probs=73.9
Q ss_pred hhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHh
Q 009671 240 LIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAER 319 (529)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 319 (529)
.+..+++|++|++.++.... +......+ +|++|+++++.+..... ..+++|+.|++.++........ ..
T Consensus 277 ~~~~l~~L~~L~l~~~~l~~---l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~----~~ 345 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIER---VKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE----VD 345 (570)
T ss_dssp TTGGGTTCSEEEEESCEECS---CCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC----CB
T ss_pred hhcCcCcccEEEecCccchh---hhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc----cc
Confidence 34455667777666543110 00111122 56666666655442211 2345555555555422111110 23
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|+.|++++|....+.. .......+++|++|++++|.+...... ...+++|++|++++|. ++..........+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 420 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 420 (570)
T ss_dssp CTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTTTTC
T ss_pred CCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCc-cccccchhhhhcC
Confidence 4556666665543222110 001122455555555555544332111 1345555555555442 1111000111234
Q ss_pred CcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 400 VALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
++|+.|++++|.++......+ ..+++|+.|++.+|.
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNS 456 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTTCE
T ss_pred CCCCEEeCcCCcccccchhhh-hcCCcCcEEECcCCc
Confidence 555555555554332211111 134455555555554
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=1.7e-19 Score=189.43 Aligned_cols=350 Identities=7% Similarity=0.024 Sum_probs=211.1
Q ss_pred hHHHhccCCceeEEEeeccCCccccCHH-----------------HHHHHH-HcCCCccEEecCCCCCCCHHHHHHHHhc
Q 009671 104 IPSLFSRFDVVTKLALKCDRRSVSVGDD-----------------ALILIS-QKCRNLTRLKLRACRELTDAGMSVFAKN 165 (529)
Q Consensus 104 l~~~~~~~~~l~~L~l~~~~~~~~~~~~-----------------~l~~l~-~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 165 (529)
++..+..+++|++|+++ .+.++.. ....+. ..+++|++|++++|. +... +...+..
T Consensus 198 ip~~l~~l~~L~~L~Ls----~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~ 271 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMG----NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTK-LPTFLKA 271 (636)
T ss_dssp ECGGGGGCTTCCEEEEE----SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSS-CCTTTTT
T ss_pred CCHHHhcccCCCEEECc----CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCcc-ChHHHhc
Confidence 66778888999999998 3444441 111121 158899999999863 2221 1122345
Q ss_pred CCCCCEEEecCcc-cChHHHHHHHhc------CCCCCEEecCCccCCCcccccc--ccCCCcccCccchhhccccccCCc
Q 009671 166 CKGLKKLSCGSCT-FGAKGMNAVLDN------CSTLEELSVKRLRGITDGAAAE--PIGPGVAASSLKTVCLKELYNGQC 236 (529)
Q Consensus 166 ~~~L~~L~L~~~~-~~~~~l~~~~~~------~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~ 236 (529)
+++|++|++++|. ++...++.-+.. +++|++|++.++. ++ .+.. .++ .+++|+.|.+.++.....
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~---~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQ---KMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHT---TCTTCCEEECCSCCCEEE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhc---cCCCCCEEeCcCCcCccc
Confidence 8899999999998 775334443434 4899999999873 33 2332 222 677888888887766545
Q ss_pred chhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCC-ccEEEeeccccChHHHHHhhc--CCCCCeEEecCCCCCChhhH
Q 009671 237 FGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTS-LVEIHLERIQVTDVGLAAISN--CLDLEIMHLVKTPECTNLGL 313 (529)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~l~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~l 313 (529)
++ .+..+++|+.|+++++. +. .+......+++ |+.|++++|.++... ..+.. +++|+.|+++++. +....-
T Consensus 346 ip-~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~-l~~~~p 419 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNE-IGSVDG 419 (636)
T ss_dssp CC-CCEEEEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSSC-TTTTTT
T ss_pred hh-hhCCCCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCCc-CCCcch
Confidence 55 66777889999888764 11 11112345566 899999888776322 22332 3478888888773 322111
Q ss_pred HHHH------HhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhc-------CCCCCEEE
Q 009671 314 AAVA------ERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASN-------CQNLERLA 380 (529)
Q Consensus 314 ~~l~------~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~-------~~~L~~L~ 380 (529)
..+. -.+++|+.|++++|....+... +...+++|++|++++|.++......+ .. +++|++|+
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~-~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKE----LFSTGSPLSSINLMGNMLTEIPKNSL-KDENENFKNTYLLTSID 494 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH----HHHTTCCCSEEECCSSCCSBCCSSSS-EETTEECTTGGGCCEEE
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHH----HHccCCCCCEEECCCCCCCCcCHHHh-ccccccccccCCccEEE
Confidence 1111 0245888899888765555432 33457888999998887763221111 11 22788899
Q ss_pred ccCCCCCChhHHHHHH--HcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCC-----CCHHHHHHHHhcCCcE
Q 009671 381 LCGSDTVGDVEISCIA--AKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRA-----VTTEGADWLRARREYV 453 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~--~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~-----i~~~~~~~l~~~~~~l 453 (529)
+++|. ++. +.... ..+++|+.|+|++|.++. ....+. .+++|+.|++++|.. +....-..+.
T Consensus 495 Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~-~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~------ 563 (636)
T 4eco_A 495 LRFNK-LTK--LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGIT------ 563 (636)
T ss_dssp CCSSC-CCB--CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCSSCCEEECCSCBCTTCCBCCCCCCTTGG------
T ss_pred CcCCc-CCc--cChhhhhccCCCcCEEECCCCCCCC-cChhhh-cCCCCCEEECCCCcccccCcccccChHHHh------
Confidence 88874 442 22222 257889999999888775 222333 588899998865431 2211001111
Q ss_pred EEEeccCccccccccCCccccCCccCC--CcccccCcccc
Q 009671 454 VVNLDSGEAEHQDASDGGVQENGIEFP--PQMVQPSVASS 491 (529)
Q Consensus 454 ~l~l~~~~~~~ld~~~~~~~~~~~~~p--l~~l~l~~c~~ 491 (529)
....+..+++++|.+.+-...+. ++.+++++|..
T Consensus 564 ----~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 564 ----LCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp ----GCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTT
T ss_pred ----cCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCCC
Confidence 12346667777777743332222 77778887763
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=3.4e-18 Score=177.51 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=17.0
Q ss_pred CCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCc
Q 009671 166 CKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 166 ~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
+++|++|++++|.+..-.+...+..+++|++|+++++
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 4555555555555432111112334555555555543
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=1.1e-17 Score=168.29 Aligned_cols=248 Identities=16% Similarity=0.089 Sum_probs=156.7
Q ss_pred cCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHh
Q 009671 110 RFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLD 189 (529)
Q Consensus 110 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~ 189 (529)
.+++|++|+++ ...++.- ..+ ..+++|++|+++++ .++... +..+++|++|++++|.++... +.
T Consensus 40 ~l~~L~~L~Ls----~n~l~~~--~~l-~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~ 103 (457)
T 3bz5_A 40 QLATLTSLDCH----NSSITDM--TGI-EKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSNKLTNLD----VT 103 (457)
T ss_dssp HHTTCCEEECC----SSCCCCC--TTG-GGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCC----CT
T ss_pred HcCCCCEEEcc----CCCcccC--hhh-cccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCCCCceee----cC
Confidence 45678888887 3333321 123 34788888888875 444432 345788888888888865432 45
Q ss_pred cCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhh
Q 009671 190 NCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDR 269 (529)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 269 (529)
.+++|++|+++++ .++...+ ..+++|+.|++..+..... -+..+++|+.|++++|....... ...
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~~-------~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~----~~~ 168 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLDV-------SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD----VTP 168 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCCC-------TTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC----CTT
T ss_pred CCCcCCEEECCCC-cCCeecC-------CCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc----ccc
Confidence 7888888888876 3333211 1567788887777654432 15677888888888875333221 235
Q ss_pred cCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCc
Q 009671 270 VTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCP 349 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~ 349 (529)
+++|+.|++++|.++... +..+++|+.|+++++ .++... ...+++|+.|++++|....+. ...++
T Consensus 169 l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-------~~~l~ 233 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNKLTEID-------VTPLT 233 (457)
T ss_dssp CTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCC-------CTTCT
T ss_pred CCcCCEEECCCCccceec---cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCcccccC-------ccccC
Confidence 677888888888777643 667788888888877 334332 234688888888887655442 34678
Q ss_pred cccceEeecccCcHHHHHHHHhcCCCCCEEEcc----------CCCCCChhHHHHHHHcCCcCCEEEeccCC
Q 009671 350 NLQELVLIGVNPTRVSLEVLASNCQNLERLALC----------GSDTVGDVEISCIAAKCVALKKLCIKSCP 411 (529)
Q Consensus 350 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~----------~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 411 (529)
+|+.|++++|.++.... ..+++|+.|+++ +|..+.... ...|++|+.|++++|.
T Consensus 234 ~L~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNT 297 (457)
T ss_dssp TCSEEECCSSCCSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCT
T ss_pred CCCEEEeeCCcCCCcCH----HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCc
Confidence 88888888887776432 455666655543 332222111 1245677777777775
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.2e-18 Score=186.40 Aligned_cols=350 Identities=9% Similarity=0.019 Sum_probs=219.4
Q ss_pred hHHHhccCCceeEEEeeccCCccccCHH-----------------HHHHHH-HcCCCccEEecCCCCCCCHHHHHHHHhc
Q 009671 104 IPSLFSRFDVVTKLALKCDRRSVSVGDD-----------------ALILIS-QKCRNLTRLKLRACRELTDAGMSVFAKN 165 (529)
Q Consensus 104 l~~~~~~~~~l~~L~l~~~~~~~~~~~~-----------------~l~~l~-~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 165 (529)
+|..+..+++|+.|+++ .+.++.. ....+. ..+++|+.|+|++|..... +...+..
T Consensus 440 IP~~l~~L~~L~~L~Ls----~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFA----NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYD 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEE----SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGG
T ss_pred hhHHHhcCCCCCEEECc----CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhC
Confidence 66678889999999998 4444441 111121 2588999999998632221 1123346
Q ss_pred CCCCCEEEecCcc-cChHHHHHHHh-------cCCCCCEEecCCccCCCcccccc--ccCCCcccCccchhhccccccCC
Q 009671 166 CKGLKKLSCGSCT-FGAKGMNAVLD-------NCSTLEELSVKRLRGITDGAAAE--PIGPGVAASSLKTVCLKELYNGQ 235 (529)
Q Consensus 166 ~~~L~~L~L~~~~-~~~~~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~ 235 (529)
+++|++|++++|. ++...++.-+. .+++|+.|++.++. +. .++. .++ .+++|+.|.+.++...
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~~~l~---~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPASASLQ---KMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCHHHHT---TCTTCCEEECTTSCCC-
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCChhhhh---cCCCCCEEECCCCCcc-
Confidence 8999999999998 76523333223 45699999999873 33 3333 222 6788999999887665
Q ss_pred cchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCC-ccEEEeeccccChHHHHHhhcC--CCCCeEEecCCCCCChhh
Q 009671 236 CFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTS-LVEIHLERIQVTDVGLAAISNC--LDLEIMHLVKTPECTNLG 312 (529)
Q Consensus 236 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~l~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~ 312 (529)
.++ .+..+++|+.|+++++.- . .+......+++ |+.|++++|.++..+ ..+... ++|+.|+++++. +...
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l-~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~-l~g~- 659 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQI-E--EIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNK-IGSE- 659 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCC-S--CCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSC-TTTT-
T ss_pred cch-hhcCCCcceEEECcCCcc-c--cchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCc-CCCc-
Confidence 555 667889999999988652 2 11122345667 999999999877322 223333 459999998873 2221
Q ss_pred HHHHH---H--hCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHH------HhcCCCCCEEEc
Q 009671 313 LAAVA---E--RCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVL------ASNCQNLERLAL 381 (529)
Q Consensus 313 l~~l~---~--~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l------~~~~~~L~~L~l 381 (529)
+..+. . .+++|+.|++++|....+... +...+++|+.|+|++|.+.......+ ..+|++|+.|++
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~----~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTE----LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH----HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred cccchhhhccccCCCcCEEEccCCcCCccCHH----HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEEC
Confidence 00010 0 235899999998876555432 33468899999999998773221111 012348999999
Q ss_pred cCCCCCChhHHHHHH--HcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCC-----CCHHHHHHHHhcCCcEE
Q 009671 382 CGSDTVGDVEISCIA--AKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRA-----VTTEGADWLRARREYVV 454 (529)
Q Consensus 382 ~~~~~~~~~~l~~l~--~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~-----i~~~~~~~l~~~~~~l~ 454 (529)
++|. ++. +.... ..+++|+.|+|++|.++. ....+. .+++|+.|+|++|.. +....-..+
T Consensus 736 s~N~-L~~--lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l-------- 802 (876)
T 4ecn_A 736 RFNK-LTS--LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGI-------- 802 (876)
T ss_dssp CSSC-CCC--CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCCCBCTTCCBCCCCCCTTG--------
T ss_pred CCCC-Ccc--chHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCCCCCcccccccccChHHH--------
Confidence 9884 442 22222 257899999999998775 122333 688999999987441 221100011
Q ss_pred EEeccCccccccccCCccccCCccCC--CcccccCccccC
Q 009671 455 VNLDSGEAEHQDASDGGVQENGIEFP--PQMVQPSVASSR 492 (529)
Q Consensus 455 l~l~~~~~~~ld~~~~~~~~~~~~~p--l~~l~l~~c~~~ 492 (529)
-....+..+++++|.+..-...+. ++.+++++|...
T Consensus 803 --~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 803 --TTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp --GGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTC
T ss_pred --hcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCC
Confidence 112446777788888843333232 788888888744
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=1.5e-17 Score=164.35 Aligned_cols=310 Identities=12% Similarity=0.024 Sum_probs=207.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVA 219 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (529)
.++++.|++.++ .++... ..++..+++|++|+++++.+..... ..+..+++|++|++.++. +..... ..+ ..
T Consensus 44 l~~l~~l~l~~~-~l~~l~-~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-~~~---~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLP-AALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPP-HVF---QN 115 (390)
T ss_dssp GCCCSEEEEESC-EESEEC-THHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC-CCCCCT-TTT---TT
T ss_pred cCCceEEEecCC-chhhCC-hhHhcccccCcEEECCCCcccccCh-hhccCCCCcCEEECCCCC-CCcCCH-HHh---cC
Confidence 579999999875 443322 2234569999999999998653221 124578999999999873 333211 111 26
Q ss_pred cCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCe
Q 009671 220 ASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEI 299 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 299 (529)
+++|+.|++.++.........+..+++|++|+++++.- ... .......+++|+.|++++|.++... +..+++|+.
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~ 190 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERI-EDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 190 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBC-CTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSE
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-Ccc-ChhhccCCCCCCEEECCCCcCCccc---cccccccce
Confidence 78899999988776655555668889999999988642 111 1112345688999999999887653 456789999
Q ss_pred EEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEE
Q 009671 300 MHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERL 379 (529)
Q Consensus 300 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L 379 (529)
|+++++ .++... ..++|++|+++++....+.. ...++|+.|++++|.+++.. . ...+++|++|
T Consensus 191 L~l~~n-~l~~~~------~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L 253 (390)
T 3o6n_A 191 ANVSYN-LLSTLA------IPIAVEELDASHNSINVVRG-------PVNVELTILKLQHNNLTDTA--W-LLNYPGLVEV 253 (390)
T ss_dssp EECCSS-CCSEEE------CCSSCSEEECCSSCCCEEEC-------CCCSSCCEEECCSSCCCCCG--G-GGGCTTCSEE
T ss_pred eecccc-cccccC------CCCcceEEECCCCeeeeccc-------cccccccEEECCCCCCcccH--H-HcCCCCccEE
Confidence 999887 333321 24689999998876444321 23578999999999888652 2 3788999999
Q ss_pred EccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEecc
Q 009671 380 ALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDS 459 (529)
Q Consensus 380 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~ 459 (529)
+++++. ++...... ...+++|+.|++++|.++.. ......+++|+.|++++|. ++.... .+.. .
T Consensus 254 ~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~----------l 317 (390)
T 3o6n_A 254 DLSYNE-LEKIMYHP-FVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVER-NQPQ----------F 317 (390)
T ss_dssp ECCSSC-CCEEESGG-GTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGG-GHHH----------H
T ss_pred ECCCCc-CCCcChhH-ccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCc-ceecCc-cccc----------c
Confidence 999885 44332122 23578999999999987652 1122357899999999997 653211 1111 1
Q ss_pred CccccccccCCccccCCcc-CC-CcccccCccccCCCc
Q 009671 460 GEAEHQDASDGGVQENGIE-FP-PQMVQPSVASSRNTR 495 (529)
Q Consensus 460 ~~~~~ld~~~~~~~~~~~~-~p-l~~l~l~~c~~~~~~ 495 (529)
..++.+++++|.+...... ++ ++.++++++......
T Consensus 318 ~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp TTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHH
T ss_pred CcCCEEECCCCccceeCchhhccCCEEEcCCCCccchh
Confidence 3466677777777654422 33 888888887755433
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.69 E-value=9.3e-19 Score=183.84 Aligned_cols=333 Identities=11% Similarity=0.077 Sum_probs=218.9
Q ss_pred hHHHhc--cCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCH-HHHHHHHh-----cCCCCCEEEec
Q 009671 104 IPSLFS--RFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTD-AGMSVFAK-----NCKGLKKLSCG 175 (529)
Q Consensus 104 l~~~~~--~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~l~~l~~-----~~~~L~~L~L~ 175 (529)
++..+. .+++|++|+++. +.+....-..+ ..+++|+.|+++++..++. .....+.. .+++|++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~----n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYN----CPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEEC----CTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred CchhhhhcccCCCCEEEecC----CcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 555555 889999999983 32222111223 3488999999998643665 22222322 24899999999
Q ss_pred CcccChHHHHH--HHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCC-CCeEec
Q 009671 176 SCTFGAKGMNA--VLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKN-LRTLKL 252 (529)
Q Consensus 176 ~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-L~~L~l 252 (529)
+|.++ .++. .+..+++|+.|++.++. +.. .+. .+ ..+++|+.|.+.++... .++..+..+++ |++|++
T Consensus 314 ~n~l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g-~ip-~~---~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 314 YNNLK--TFPVETSLQKMKKLGMLECLYNQ-LEG-KLP-AF---GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF 384 (636)
T ss_dssp SSCCS--SCCCHHHHTTCTTCCEEECCSCC-CEE-ECC-CC---EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred CCcCC--ccCchhhhccCCCCCEEeCcCCc-Ccc-chh-hh---CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence 99976 3433 56789999999999873 221 122 11 26789999999887655 56666788888 999999
Q ss_pred cccCCCchHHHHHHHh--hcCCccEEEeeccccChHHHHHhh-------cCCCCCeEEecCCCCCChhhHHHHHHhCCCC
Q 009671 253 FRCSGDWDKLLQLVTD--RVTSLVEIHLERIQVTDVGLAAIS-------NCLDLEIMHLVKTPECTNLGLAAVAERCKLL 323 (529)
Q Consensus 253 ~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~l~~~~~~~l~-------~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 323 (529)
+++.- .. +..... .+++|+.|++++|.++......+. .+++|+.|+++++ .++... ..+...+++|
T Consensus 385 s~N~l-~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~~~~l~~L 459 (636)
T 4eco_A 385 AHNKL-KY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFP-KELFSTGSPL 459 (636)
T ss_dssp CSSCC-SS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCC-THHHHTTCCC
T ss_pred cCCcC-cc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCC-HHHHccCCCC
Confidence 98752 21 111111 234799999999988775554455 5779999999988 344222 2334458999
Q ss_pred cEEEecCcccCccChHHHHHH---HhcCccccceEeecccCcHHHHHHHH-hcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 324 RKLHIDGWKANRIGDEGLIAV---AKCCPNLQELVLIGVNPTRVSLEVLA-SNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 324 ~~L~L~~~~~~~i~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+.|++++|....+....+... .+.+++|+.|++++|.++... ..+. ..+++|++|++++|. ++. +......+
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l 535 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNS 535 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGC
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCCC-CCC--cChhhhcC
Confidence 999999987654443221111 012238999999999888322 2221 378999999999985 443 22223468
Q ss_pred CcCCEEEecc------CCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccc
Q 009671 400 VALKKLCIKS------CPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQ 473 (529)
Q Consensus 400 ~~L~~L~l~~------~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~ 473 (529)
++|+.|++++ |.+.......+. .+++|+.|++++|. ++. .|.. +. ..+..+|+++|.+.
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~---------ip~~---~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSND-IRK---------VNEK---IT-PNISVLDIKDNPNI 600 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSC-CCB---------CCSC---CC-TTCCEEECCSCTTC
T ss_pred CCCCEEECCCCcccccCcccccChHHHh-cCCCCCEEECCCCc-CCc---------cCHh---Hh-CcCCEEECcCCCCc
Confidence 9999999954 444433333444 58999999999998 432 1111 11 46788888888775
Q ss_pred c
Q 009671 474 E 474 (529)
Q Consensus 474 ~ 474 (529)
.
T Consensus 601 ~ 601 (636)
T 4eco_A 601 S 601 (636)
T ss_dssp E
T ss_pred c
Confidence 4
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=3e-18 Score=183.40 Aligned_cols=333 Identities=11% Similarity=0.067 Sum_probs=217.8
Q ss_pred hHHHhc--cCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCH-H---HHHHHH---hcCCCCCEEEe
Q 009671 104 IPSLFS--RFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTD-A---GMSVFA---KNCKGLKKLSC 174 (529)
Q Consensus 104 l~~~~~--~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~---~l~~l~---~~~~~L~~L~L 174 (529)
++..+. .+++|+.|+++. +.+.......+ ..+++|+.|+++++..++. . .+..+. ..+++|++|++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~----N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYN----CPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEES----CTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred CChhhhhccCCCCCEEECcC----CCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 444444 889999999983 22222111223 3589999999998643655 2 222221 34569999999
Q ss_pred cCcccChHHHHH--HHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCC-CCeEe
Q 009671 175 GSCTFGAKGMNA--VLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKN-LRTLK 251 (529)
Q Consensus 175 ~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-L~~L~ 251 (529)
++|.+. .++. .+..+++|+.|+++++. +. .+. .+ ..+++|+.|.+.++... .++..+..+++ |+.|+
T Consensus 556 s~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp-~~---~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 556 GYNNLE--EFPASASLQKMVKLGLLDCVHNK-VR--HLE-AF---GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp CSSCCC--BCCCHHHHTTCTTCCEEECTTSC-CC--BCC-CC---CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred eCCcCC--ccCChhhhhcCCCCCEEECCCCC-cc--cch-hh---cCCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 999976 3433 56789999999999874 44 333 22 26789999999988766 66666788888 99999
Q ss_pred ccccCCCchHHHHHHHhhc--CCccEEEeeccccChHHH---HHhh--cCCCCCeEEecCCCCCChhhHHHHHHhCCCCc
Q 009671 252 LFRCSGDWDKLLQLVTDRV--TSLVEIHLERIQVTDVGL---AAIS--NCLDLEIMHLVKTPECTNLGLAAVAERCKLLR 324 (529)
Q Consensus 252 l~~~~~~~~~~l~~l~~~~--~~L~~L~l~~~~l~~~~~---~~l~--~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 324 (529)
++++. +.. ++...... ++|+.|++++|.+..... ..+. .+++|+.|++++| .++... ..+...+++|+
T Consensus 626 Ls~N~-L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp-~~~~~~l~~L~ 700 (876)
T 4ecn_A 626 FSHNK-LKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFP-TELFATGSPIS 700 (876)
T ss_dssp CCSSC-CCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCC-HHHHHTTCCCS
T ss_pred CcCCC-CCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccC-HHHHccCCCCC
Confidence 99875 221 11111222 349999999998765321 1122 3458999999988 344322 23444689999
Q ss_pred EEEecCcccCccChHHHHHH---HhcCccccceEeecccCcHHHHHHHH-hcCCCCCEEEccCCCCCChhHHHHHHHcCC
Q 009671 325 KLHIDGWKANRIGDEGLIAV---AKCCPNLQELVLIGVNPTRVSLEVLA-SNCQNLERLALCGSDTVGDVEISCIAAKCV 400 (529)
Q Consensus 325 ~L~L~~~~~~~i~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 400 (529)
.|+|++|....+....+... ...+++|+.|+|++|.++... ..+. ..+++|+.|++++|. ++. +..-...++
T Consensus 701 ~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~ 776 (876)
T 4ecn_A 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSS 776 (876)
T ss_dssp EEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCT
T ss_pred EEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCC
Confidence 99999987655543222111 112349999999999887322 2221 378999999999885 443 222234689
Q ss_pred cCCEEEecc------CCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCcccc
Q 009671 401 ALKKLCIKS------CPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQE 474 (529)
Q Consensus 401 ~L~~L~l~~------~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~ 474 (529)
+|+.|+|++ |.+.......+. .+++|+.|+|++|. ++. .|.. + ...+..+|+++|.+.+
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~-~L~~L~~L~Ls~N~-L~~---------Ip~~---l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSND-IRK---------VDEK---L-TPQLYILDIADNPNIS 841 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSC-CCB---------CCSC---C-CSSSCEEECCSCTTCE
T ss_pred CCCEEECCCCCCcccccccccChHHHh-cCCCCCEEECCCCC-CCc---------cCHh---h-cCCCCEEECCCCCCCc
Confidence 999999977 444433333444 68999999999998 431 1221 1 1467888888888754
Q ss_pred C
Q 009671 475 N 475 (529)
Q Consensus 475 ~ 475 (529)
.
T Consensus 842 i 842 (876)
T 4ecn_A 842 I 842 (876)
T ss_dssp E
T ss_pred c
Confidence 3
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=170.25 Aligned_cols=278 Identities=17% Similarity=0.099 Sum_probs=175.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVA 219 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (529)
.++++.|+|+++ .++..... .+..+++|++|+|++|.+.... ...+..+++|++|++.++. +..... .. ...
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~---~~~ 102 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQD-EFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNR-LKLIPL-GV---FTG 102 (477)
T ss_dssp CTTCSEEECCSS-CCCEECTT-TTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCSCCT-TS---STT
T ss_pred CCCCcEEECCCC-ccceECHh-HccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCc-CCccCc-cc---ccC
Confidence 358999999985 55543222 2345899999999999865321 1224578999999998763 332111 11 115
Q ss_pred cCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCe
Q 009671 220 ASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEI 299 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 299 (529)
+++|+.|++.++......+..+..+++|++|+++++.- .... ......+++|++|++++|.++......+..+++|+.
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-ceeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 67888888887766655566677788888888877532 1110 011235677888888888777766666777888888
Q ss_pred EEecCCCCCChhhHHHHHHhCCCCcEEEecCcccC-ccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCE
Q 009671 300 MHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKAN-RIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLER 378 (529)
Q Consensus 300 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~ 378 (529)
|++.++. +...... ....+++|+.|++++|... .+... .....+|+.|++++|.++......+ ..+++|+.
T Consensus 181 L~l~~n~-i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~ 252 (477)
T 2id5_A 181 LRLRHLN-INAIRDY-SFKRLYRLKVLEISHWPYLDTMTPN-----CLYGLNLTSLSITHCNLTAVPYLAV-RHLVYLRF 252 (477)
T ss_dssp EEEESCC-CCEECTT-CSCSCTTCCEEEEECCTTCCEECTT-----TTTTCCCSEEEEESSCCCSCCHHHH-TTCTTCCE
T ss_pred EeCCCCc-CcEeChh-hcccCcccceeeCCCCccccccCcc-----cccCccccEEECcCCcccccCHHHh-cCccccCe
Confidence 8888763 2222111 1224678888888775321 11111 1123478888888887776554444 67888888
Q ss_pred EEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCC
Q 009671 379 LALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVT 439 (529)
Q Consensus 379 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 439 (529)
|+++++. ++...... ...+++|+.|+|++|.++......+. .+++|+.|++++|. ++
T Consensus 253 L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~ 309 (477)
T 2id5_A 253 LNLSYNP-ISTIEGSM-LHELLRLQEIQLVGGQLAVVEPYAFR-GLNYLRVLNVSGNQ-LT 309 (477)
T ss_dssp EECCSSC-CCEECTTS-CTTCTTCCEEECCSSCCSEECTTTBT-TCTTCCEEECCSSC-CS
T ss_pred eECCCCc-CCccChhh-ccccccCCEEECCCCccceECHHHhc-CcccCCEEECCCCc-Cc
Confidence 8888774 33322111 23467888888888876654333333 57788888888876 54
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.68 E-value=1.8e-17 Score=163.95 Aligned_cols=301 Identities=13% Similarity=0.071 Sum_probs=147.0
Q ss_pred CCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhc
Q 009671 111 FDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDN 190 (529)
Q Consensus 111 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~ 190 (529)
+++++.++++ ...++.-. ..+...+++|++|+++++ .++...... +..+++|++|++++|.+.... ...+..
T Consensus 44 l~~l~~l~l~----~~~l~~l~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFK----NSTMRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNAIRYLP-PHVFQN 115 (390)
T ss_dssp GCCCSEEEEE----SCEESEEC-THHHHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTT
T ss_pred cCCceEEEec----CCchhhCC-hhHhcccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCCCCCcCC-HHHhcC
Confidence 4667777776 22222111 112234778888888775 444322112 235778888888887754321 112346
Q ss_pred CCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhc
Q 009671 191 CSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRV 270 (529)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 270 (529)
+++|++|++.++. +.. +... ....+++|+.|.+.++......+..+..+++|++|+++++.- .... ...+
T Consensus 116 l~~L~~L~L~~n~-l~~--l~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~----~~~l 185 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSS--LPRG--IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD----LSLI 185 (390)
T ss_dssp CTTCCEEECCSSC-CCC--CCTT--TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCC----GGGC
T ss_pred CCCCCEEECCCCc-cCc--CCHH--HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccc----cccc
Confidence 7788888887762 332 1110 011567777777777665555555567778888888877542 2111 2334
Q ss_pred CCccEEEeeccccChHHHH----------------HhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccC
Q 009671 271 TSLVEIHLERIQVTDVGLA----------------AISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKAN 334 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~----------------~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 334 (529)
++|+.|+++++.++..... .....++|+.|+++++. +++. .....+++|++|++++|...
T Consensus 186 ~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp TTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCC
T ss_pred cccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCC-Cccc---HHHcCCCCccEEECCCCcCC
Confidence 5666666666544431100 00112445555555542 2221 11223455555555554332
Q ss_pred ccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCH
Q 009671 335 RIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSD 414 (529)
Q Consensus 335 ~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~ 414 (529)
.+... ....+++|++|++++|.++.... ....+++|++|++++|. ++... .....+++|+.|++++|++++
T Consensus 262 ~~~~~----~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 262 KIMYH----PFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNH-LLHVE--RNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp EEESG----GGTTCSSCCEEECCSSCCCEEEC--SSSCCTTCCEEECCSSC-CCCCG--GGHHHHTTCSEEECCSSCCCC
T ss_pred CcChh----HccccccCCEEECCCCcCcccCc--ccCCCCCCCEEECCCCc-ceecC--ccccccCcCCEEECCCCccce
Confidence 22111 11234555555555555443211 11344556666665553 22110 001224556666666655443
Q ss_pred HHHHHHHhcCCCccEEEeccCCCCCHHHHHHHH
Q 009671 415 HGMEALAGGCPNLVKVKVKKCRAVTTEGADWLR 447 (529)
Q Consensus 415 ~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~ 447 (529)
.. ...+++|+.|++.+++ ++.++...+.
T Consensus 333 ~~----~~~~~~L~~L~l~~N~-~~~~~~~~~~ 360 (390)
T 3o6n_A 333 LK----LSTHHTLKNLTLSHND-WDCNSLRALF 360 (390)
T ss_dssp CC----CCTTCCCSEEECCSSC-EEHHHHHHHT
T ss_pred eC----chhhccCCEEEcCCCC-ccchhHHHHH
Confidence 21 2235556666666655 5544444433
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=3.5e-16 Score=163.24 Aligned_cols=310 Identities=12% Similarity=0.025 Sum_probs=207.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVA 219 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (529)
.++++.|++.++ .++... ..++..+++|++|++++|.+..... ..+..+++|+.|+++++. +..... ..+ ..
T Consensus 50 l~~l~~l~l~~~-~l~~lp-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-~~~---~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLP-AALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNA-IRYLPP-HVF---QN 121 (597)
T ss_dssp GCCCSEEEESSC-EESEEC-THHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC-CCCCCT-TTT---TT
T ss_pred CCCceEEEeeCC-CCCCcC-HHHHccCCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCCc-CCCCCH-HHH---cC
Confidence 578999999875 333222 2334569999999999998753211 124578999999999873 333211 111 26
Q ss_pred cCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCe
Q 009671 220 ASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEI 299 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 299 (529)
+++|+.|++.++.........+..+++|++|+++++.- ... .......+++|+.|++++|.++... +..+++|+.
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~-~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~ 196 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERI-EDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 196 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBC-CTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCC-ChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhh
Confidence 78899999988876665556678899999999998742 211 1112345788999999999877653 456789999
Q ss_pred EEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEE
Q 009671 300 MHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERL 379 (529)
Q Consensus 300 L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L 379 (529)
|+++++ .++... ..++|+.|++++|....+.. ...++|+.|++++|.+++. .. ...+++|+.|
T Consensus 197 L~l~~n-~l~~l~------~~~~L~~L~ls~n~l~~~~~-------~~~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L 259 (597)
T 3oja_B 197 ANVSYN-LLSTLA------IPIAVEELDASHNSINVVRG-------PVNVELTILKLQHNNLTDT--AW-LLNYPGLVEV 259 (597)
T ss_dssp EECCSS-CCSEEE------CCTTCSEEECCSSCCCEEEC-------SCCSCCCEEECCSSCCCCC--GG-GGGCTTCSEE
T ss_pred hhcccC-cccccc------CCchhheeeccCCccccccc-------ccCCCCCEEECCCCCCCCC--hh-hccCCCCCEE
Confidence 999887 333321 24689999998876443322 1247899999999988864 22 3788999999
Q ss_pred EccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEecc
Q 009671 380 ALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDS 459 (529)
Q Consensus 380 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~ 459 (529)
++++|. ++...... ...+++|+.|+|++|.++.. ......+++|+.|+|++|. ++... ..+. . .
T Consensus 260 ~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~-~---------l 323 (597)
T 3oja_B 260 DLSYNE-LEKIMYHP-FVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQP-Q---------F 323 (597)
T ss_dssp ECCSSC-CCEEESGG-GTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGHH-H---------H
T ss_pred ECCCCc-cCCCCHHH-hcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCC-CCccC-cccc-c---------C
Confidence 999885 44322122 23588999999999987652 2222357899999999998 55211 1111 1 1
Q ss_pred CccccccccCCccccCCc-cCC-CcccccCccccCCCc
Q 009671 460 GEAEHQDASDGGVQENGI-EFP-PQMVQPSVASSRNTR 495 (529)
Q Consensus 460 ~~~~~ld~~~~~~~~~~~-~~p-l~~l~l~~c~~~~~~ 495 (529)
+.+..+++++|.+..... .+| ++.+.++++......
T Consensus 324 ~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 324 DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChh
Confidence 346667777777755432 233 888888888755443
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=2.5e-15 Score=150.96 Aligned_cols=203 Identities=17% Similarity=0.141 Sum_probs=122.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVA 219 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 219 (529)
+++|++|+++++ .++.. .. +..+++|++|++++|.++... +..+++|++|+++++. ++...+ ..
T Consensus 41 l~~L~~L~Ls~n-~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~~-------~~ 104 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDM--TG-IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK-LTNLDV-------TP 104 (457)
T ss_dssp HTTCCEEECCSS-CCCCC--TT-GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCCCC-------TT
T ss_pred cCCCCEEEccCC-CcccC--hh-hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC-Cceeec-------CC
Confidence 678999999885 45432 22 346899999999999875432 4578899999998863 433221 15
Q ss_pred cCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeecc-ccChHHHHHhhcCCCCC
Q 009671 220 ASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-QVTDVGLAAISNCLDLE 298 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~ 298 (529)
+++|+.|++.++..... + +..+++|++|+++++.- .... ...+++|++|++++| .++.. .+..+++|+
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l-~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~ 173 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTL-TEID----VSHNTQLTELDCHLNKKITKL---DVTPQTQLT 173 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCC-SCCC----CTTCTTCCEEECTTCSCCCCC---CCTTCTTCC
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcc-ceec----cccCCcCCEEECCCCCccccc---ccccCCcCC
Confidence 66777777766544331 1 45667777777766532 1110 234566777777666 33332 244566777
Q ss_pred eEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCE
Q 009671 299 IMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLER 378 (529)
Q Consensus 299 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~ 378 (529)
.|+++++ .++... ...+++|+.|++++|....+. ...+++|+.|++++|.++... ...+++|+.
T Consensus 174 ~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N~l~~~~-------l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~ 237 (457)
T 3bz5_A 174 TLDCSFN-KITELD----VSQNKLLNRLNCDTNNITKLD-------LNQNIQLTFLDCSSNKLTEID----VTPLTQLTY 237 (457)
T ss_dssp EEECCSS-CCCCCC----CTTCTTCCEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC----CTTCTTCSE
T ss_pred EEECCCC-ccceec----cccCCCCCEEECcCCcCCeec-------cccCCCCCEEECcCCcccccC----ccccCCCCE
Confidence 7777665 333322 234566777777665443331 234567777777777666532 256667777
Q ss_pred EEccCCC
Q 009671 379 LALCGSD 385 (529)
Q Consensus 379 L~l~~~~ 385 (529)
|+++++.
T Consensus 238 L~l~~N~ 244 (457)
T 3bz5_A 238 FDCSVNP 244 (457)
T ss_dssp EECCSSC
T ss_pred EEeeCCc
Confidence 7776663
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=3.3e-16 Score=163.46 Aligned_cols=275 Identities=12% Similarity=0.079 Sum_probs=133.5
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCc
Q 009671 139 KCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGV 218 (529)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (529)
.+++|+.|+|+++ .++..... .+..+++|++|+|++|.++... ...+..+++|+.|+++++. ++... ...+ .
T Consensus 73 ~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~-~~~~---~ 144 (597)
T 3oja_B 73 SFRQVELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERND-LSSLP-RGIF---H 144 (597)
T ss_dssp HCCCCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTT---T
T ss_pred cCCCCcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCCcCCCCC-HHHHcCCCCCCEEEeeCCC-CCCCC-HHHh---c
Confidence 3667777777764 34332211 1234667777777777653211 1123456777777777652 22111 0011 1
Q ss_pred ccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHH---------
Q 009671 219 AASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLA--------- 289 (529)
Q Consensus 219 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~--------- 289 (529)
.+++|+.|++.++......+..+..+++|++|+++++.- .... ...+++|+.|++++|.++.....
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~----~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC----GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC----hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 456677777766655555555566677777777776532 1111 22345566666655544331100
Q ss_pred -----Hh--hcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCc
Q 009671 290 -----AI--SNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPT 362 (529)
Q Consensus 290 -----~l--~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~ 362 (529)
.+ ...++|+.|+++++. +++. .....+++|+.|+|++|....+.... ...+++|+.|+|++|.++
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLV 291 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSCCCEEESGG----GTTCSSCCEEECTTSCCC
T ss_pred CCcccccccccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCCccCCCCHHH----hcCccCCCEEECCCCCCC
Confidence 00 012355555555552 2221 11223556666666655433221111 124556666666666554
Q ss_pred HHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHH
Q 009671 363 RVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEG 442 (529)
Q Consensus 363 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~ 442 (529)
... .....+++|+.|++++|. ++. +......+++|+.|+|++|.++... ...+++|+.|++++|+ ++.+.
T Consensus 292 ~l~--~~~~~l~~L~~L~Ls~N~-l~~--i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~-~~~~~ 361 (597)
T 3oja_B 292 ALN--LYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHND-WDCNS 361 (597)
T ss_dssp EEE--CSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSC-EEHHH
T ss_pred CCC--cccccCCCCcEEECCCCC-CCc--cCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCC-CCChh
Confidence 421 111345566666666553 221 1111123556666666666654321 2245566666666666 44443
Q ss_pred HH
Q 009671 443 AD 444 (529)
Q Consensus 443 ~~ 444 (529)
..
T Consensus 362 ~~ 363 (597)
T 3oja_B 362 LR 363 (597)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=5.2e-17 Score=155.61 Aligned_cols=247 Identities=14% Similarity=0.084 Sum_probs=144.3
Q ss_pred HHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCcccccc
Q 009671 133 LILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAE 212 (529)
Q Consensus 133 l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 212 (529)
+..+...+++|++|+++++ .++...... +..+++|++|++++|.+.... . +..+++|++|+++++. ++.
T Consensus 26 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~----- 94 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQE----- 94 (317)
T ss_dssp HHHHHTTGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEE-----
T ss_pred HHHHhccCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccc-----
Confidence 3344455667777777764 444332222 235777777777777653211 1 4466777777776652 111
Q ss_pred ccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhh
Q 009671 213 PIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAIS 292 (529)
Q Consensus 213 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 292 (529)
+...++|++|+++++.- .... ...+++|++|++++|.++......+.
T Consensus 95 ----------------------------l~~~~~L~~L~l~~n~l-~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 95 ----------------------------LLVGPSIETLHAANNNI-SRVS----CSRGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp ----------------------------EEECTTCCEEECCSSCC-SEEE----ECCCSSCEEEECCSSCCCSGGGBCTG
T ss_pred ----------------------------ccCCCCcCEEECCCCcc-CCcC----ccccCCCCEEECCCCCCCCccchhhh
Confidence 12236777777776532 1110 12356688888888777766555556
Q ss_pred cCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhc
Q 009671 293 NCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASN 372 (529)
Q Consensus 293 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~ 372 (529)
.+++|+.|+++++ .++......+...+++|+.|++++|....+... ..+++|++|++++|.++..... ...
T Consensus 142 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~l~~L~~L~Ls~N~l~~l~~~--~~~ 212 (317)
T 3o53_A 142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ------VVFAKLKTLDLSSNKLAFMGPE--FQS 212 (317)
T ss_dssp GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC------CCCTTCCEEECCSSCCCEECGG--GGG
T ss_pred ccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc------cccccCCEEECCCCcCCcchhh--hcc
Confidence 6778888888776 444444444444567888888877654333111 1367788888888777643222 256
Q ss_pred CCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccC
Q 009671 373 CQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKC 435 (529)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c 435 (529)
+++|++|+++++. ++. +......+++|+.|++++|+++...+......+++|+.|++.++
T Consensus 213 l~~L~~L~L~~N~-l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 213 AAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp GTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCcccEEECcCCc-ccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 6778888887774 332 11112346778888888887774344444445666666666544
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=1.9e-16 Score=152.81 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=28.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
++++.|+++++ .++...... +..+++|++|++++|.++... ...+..+++|++|+++++
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSS
T ss_pred CCCeEEECCCC-cCCEeChhh-hccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCC
Confidence 45666666653 333221111 234566666666666543211 111335566666666654
No 50
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.58 E-value=3.3e-15 Score=126.43 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=98.9
Q ss_pred ccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHc---CCcCCEEEeccCC-CCHHHHHHHHhcC
Q 009671 349 PNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAK---CVALKKLCIKSCP-VSDHGMEALAGGC 424 (529)
Q Consensus 349 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~-i~~~~l~~l~~~~ 424 (529)
.+|++|++++|.+++.++..+ ..|++|++|+|++|..++|.++..++.. +++|++|+|++|. |||.|+..+. .|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 468999999999999999888 7999999999999999999999999863 6789999999996 9999999998 69
Q ss_pred CCccEEEeccCCCCCHHH--HHHHHhcCCcEEEEec
Q 009671 425 PNLVKVKVKKCRAVTTEG--ADWLRARREYVVVNLD 458 (529)
Q Consensus 425 ~~L~~L~l~~c~~i~~~~--~~~l~~~~~~l~l~l~ 458 (529)
++|++|+|++|+.|++.+ +..+.+..|.++++++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~~ 174 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLD 174 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEec
Confidence 999999999999999975 7888899999998876
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=3.9e-16 Score=150.56 Aligned_cols=245 Identities=16% Similarity=0.134 Sum_probs=147.6
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccC
Q 009671 142 NLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAAS 221 (529)
Q Consensus 142 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 221 (529)
+++.++++++ .++... ....++|++|+++++.++.... ..+..+++|++|++.++. +..
T Consensus 32 ~l~~l~~~~~-~l~~lp----~~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~-------------- 90 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVP----KDLPPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNK-ISK-------------- 90 (330)
T ss_dssp ETTEEECTTS-CCCSCC----CSCCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSC-CCC--------------
T ss_pred CCeEEEecCC-CccccC----ccCCCCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCc-CCe--------------
Confidence 5666666653 222110 0113567777777776532211 113456677777776542 222
Q ss_pred ccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEE
Q 009671 222 SLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMH 301 (529)
Q Consensus 222 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 301 (529)
..+..+..+++|++|+++++. +..-. ....++|++|++++|.++......+..+++|+.|+
T Consensus 91 --------------~~~~~~~~l~~L~~L~Ls~n~-l~~l~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 91 --------------ISPGAFAPLVKLERLYLSKNQ-LKELP----EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp --------------BCTTTTTTCTTCCEEECCSSC-CSBCC----SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred --------------eCHHHhcCCCCCCEEECCCCc-CCccC----hhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 222344667888888887754 21100 01125788888888888777666777888889998
Q ss_pred ecCCCCCChhh-HHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEE
Q 009671 302 LVKTPECTNLG-LAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 302 L~~~~~~~~~~-l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
++++. +...+ .......+++|+.|+++++....+... ..++|++|++++|.++......+ ..+++|++|+
T Consensus 152 l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-------~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ 222 (330)
T 1xku_A 152 LGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-------LPPSLTELHLDGNKITKVDAASL-KGLNNLAKLG 222 (330)
T ss_dssp CCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-------CCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEE
T ss_pred CCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCcc-------ccccCCEEECCCCcCCccCHHHh-cCCCCCCEEE
Confidence 88773 33211 112234578889998888755444321 13788889998888776543344 6778899999
Q ss_pred ccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCH
Q 009671 381 LCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTT 440 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~ 440 (529)
++++. ++...... ...+++|++|++++|.++.. ...+ ..+++|++|++.+|. ++.
T Consensus 223 Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~l-p~~l-~~l~~L~~L~l~~N~-i~~ 277 (330)
T 1xku_A 223 LSFNS-ISAVDNGS-LANTPHLRELHLNNNKLVKV-PGGL-ADHKYIQVVYLHNNN-ISA 277 (330)
T ss_dssp CCSSC-CCEECTTT-GGGSTTCCEEECCSSCCSSC-CTTT-TTCSSCCEEECCSSC-CCC
T ss_pred CCCCc-CceeChhh-ccCCCCCCEEECCCCcCccC-Chhh-ccCCCcCEEECCCCc-CCc
Confidence 88874 43322111 23578899999998886621 1122 357888999998887 554
No 52
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=3.2e-14 Score=138.52 Aligned_cols=173 Identities=21% Similarity=0.247 Sum_probs=108.9
Q ss_pred cCCccEEEeeccccChHHHHHhhc-----CCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHH
Q 009671 270 VTSLVEIHLERIQVTDVGLAAISN-----CLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAV 344 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~ 344 (529)
.+.|+.|++++|.+++.....+.. +++|+.|+|++| .+++.++..+...+++|++|+|++| .+++.+...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n---~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN---SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS---CCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC---CCCHHHHHHH
Confidence 345667777776666665555432 256777777766 4566666666555566777777664 4555555544
Q ss_pred Hh----cCccccceEeecccCcHHHHHHHH---hcCCCCCEEEccCCCCCChhHHHHHHH---cCCcCCEEEeccCCCCH
Q 009671 345 AK----CCPNLQELVLIGVNPTRVSLEVLA---SNCQNLERLALCGSDTVGDVEISCIAA---KCVALKKLCIKSCPVSD 414 (529)
Q Consensus 345 ~~----~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~i~~ 414 (529)
.. .+++|++|+|++|.+++.+...+. ..+++|++|++++|. +++.++..++. .+++|+.|+|++|.|++
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 32 246677777777777666554442 456667777777664 66666555443 34567777777777777
Q ss_pred HHHHHHHh---cCCCccEEEeccCCCCCHHHHHHHHh
Q 009671 415 HGMEALAG---GCPNLVKVKVKKCRAVTTEGADWLRA 448 (529)
Q Consensus 415 ~~l~~l~~---~~~~L~~L~l~~c~~i~~~~~~~l~~ 448 (529)
.+...+.. .+++|++|+|++|. +++.++..+..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~ 261 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHH
Confidence 66655543 34677777777776 77777777666
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=2e-15 Score=156.61 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=84.0
Q ss_pred hcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChh-hHHHHHHhCCCCcEEEecCcccCc-cChHHHHHHHh
Q 009671 269 RVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNL-GLAAVAERCKLLRKLHIDGWKANR-IGDEGLIAVAK 346 (529)
Q Consensus 269 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~~~~~-i~~~~l~~~~~ 346 (529)
.+++|++|++++|.+++.....+..+++|+.|+++++ .++.. .+......+++|+.|++++|.... +... ...
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~ 425 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR----TCA 425 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC----CCC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChh----hhc
Confidence 4456666666666666544444556666777777665 33321 222223345667777776654332 2211 122
Q ss_pred cCccccceEeecccCcHHHHHHHHhcC-CCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCC
Q 009671 347 CCPNLQELVLIGVNPTRVSLEVLASNC-QNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCP 425 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~ 425 (529)
.+++|+.|++++|.++.... ..+ ++|++|++++|. ++. +..-...+++|+.|++++|.++..... ....++
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N~-l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~ 497 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNR-IMS--IPKDVTHLQALQELNVASNQLKSVPDG-VFDRLT 497 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSSC-CCC--CCTTTTSSCCCSEEECCSSCCCCCCTT-STTTCT
T ss_pred CcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCCc-Ccc--cChhhcCCCCCCEEECCCCCCCCCCHH-HHhcCC
Confidence 34667777777776654322 223 467777776663 331 111112466777777777765531111 123566
Q ss_pred CccEEEeccCCCC
Q 009671 426 NLVKVKVKKCRAV 438 (529)
Q Consensus 426 ~L~~L~l~~c~~i 438 (529)
+|+.|++.+++..
T Consensus 498 ~L~~L~l~~N~~~ 510 (562)
T 3a79_B 498 SLQYIWLHDNPWD 510 (562)
T ss_dssp TCCCEECCSCCBC
T ss_pred CCCEEEecCCCcC
Confidence 7777777777633
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.4e-15 Score=143.95 Aligned_cols=65 Identities=8% Similarity=0.062 Sum_probs=36.6
Q ss_pred cCCCCCEEEccCCCCCChhHHHHH---HHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCC
Q 009671 372 NCQNLERLALCGSDTVGDVEISCI---AAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAV 438 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i 438 (529)
.++.++.+++.++. +++..+..+ ...+++|+.|++++|.++... ..+...+++|++|++.+|+-.
T Consensus 247 ~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 247 TNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred ccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCCCCccC-HHHHhcCCCCCEEEeeCCCcc
Confidence 34556666665553 454443332 234677777777777765321 122235677788888777733
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=1.5e-14 Score=145.20 Aligned_cols=162 Identities=15% Similarity=0.036 Sum_probs=60.1
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|+.|++++|....+.+ ..++|+.|++++|.++... ..+++|++|++++|. ++... ...
T Consensus 236 l~~L~~L~l~~N~l~~l~~--------~~~~L~~L~l~~N~l~~l~-----~~~~~L~~L~ls~N~-l~~l~-----~~~ 296 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTLPD--------LPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENI-FSGLS-----ELP 296 (454)
T ss_dssp CTTCCEEECCSSCCSSCCS--------CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSC-CSEES-----CCC
T ss_pred CCCCCEEECCCCcCCcccc--------cccccCEEECCCCcccccC-----cccCcCCEEECcCCc-cCccc-----CcC
Confidence 4555555555543322221 1245555555555444311 123455555555543 22100 012
Q ss_pred CcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccCCccC
Q 009671 400 VALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENGIEF 479 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~~~~ 479 (529)
++|+.|++++|.++. +....++|+.|++++|. ++. .|. ....+..+++++|.+.+-...+
T Consensus 297 ~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~-l~~---------lp~-----~~~~L~~L~L~~N~l~~lp~~l 356 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNK-LIE---------LPA-----LPPRLERLIASFNHLAEVPELP 356 (454)
T ss_dssp TTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSC-CSC---------CCC-----CCTTCCEEECCSSCCSCCCCCC
T ss_pred CcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCc-ccc---------ccc-----cCCcCCEEECCCCccccccchh
Confidence 455666666555443 11111356666666654 331 000 0133555566666655322212
Q ss_pred C-CcccccCccccCC--CchhHHHHH-------------hhhhccccccccccccccC
Q 009671 480 P-PQMVQPSVASSRN--TRSTSFKTR-------------LGLLSGRSLVACTLRRWSS 521 (529)
Q Consensus 480 p-l~~l~l~~c~~~~--~~~~~~~~~-------------~~~l~~l~l~~~~~~~~~~ 521 (529)
+ ++.++++++.... .. ...... +.+|+.|++++|.+..+|.
T Consensus 357 ~~L~~L~L~~N~l~~l~~i-p~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~ 413 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDI-PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413 (454)
T ss_dssp TTCCEEECCSSCCSSCCCC-CTTCCEEECCC---------------------------
T ss_pred hhccEEECCCCCCCcCCCC-hHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc
Confidence 2 5666666555332 11 111111 2567777777777766544
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=1.3e-16 Score=154.09 Aligned_cols=272 Identities=14% Similarity=0.129 Sum_probs=114.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCccc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAA 220 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 220 (529)
++|+.|+++++ .+...... .+..+++|++|++++|.++... ...+..+++|++|+++++. +.. +... ..
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~--l~~~-----~~ 122 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKD-DFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNH-LVE--IPPN-----LP 122 (332)
T ss_dssp TTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSC-CCS--CCSS-----CC
T ss_pred CCCeEEECCCC-cCCccCHh-HhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCc-CCc--cCcc-----cc
Confidence 45666666653 33322111 1234566666666666643211 1123356666666666542 221 1111 11
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeE
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 300 (529)
++|+.|++.++.........+..+++|++|+++++.-............+ +|+.|+++++.++..... -.++|+.|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~---~~~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD---LPETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS---SCSSCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc---ccCCCCEE
Confidence 44555555544443333334455666666666654311000000011111 455566655554432110 12455555
Q ss_pred EecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEE
Q 009671 301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 301 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
+++++ .++......+ ..+++|+.|++++|....+.... ...+++|+.|++++|.++... .-...+++|++|+
T Consensus 199 ~l~~n-~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 199 HLDHN-KIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVVY 270 (332)
T ss_dssp BCCSS-CCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCSSCCCBCC--TTGGGCTTCCEEE
T ss_pred ECCCC-cCCccCHHHh-cCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCCCcCeecC--hhhhcCccCCEEE
Confidence 55554 2222111111 12455666666555433332211 124555666666655554211 1124555666666
Q ss_pred ccCCCCCChhHHHHHHH-----cCCcCCEEEeccCCCCHHHH-HHHHhcCCCccEEEeccCC
Q 009671 381 LCGSDTVGDVEISCIAA-----KCVALKKLCIKSCPVSDHGM-EALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~~-----~~~~L~~L~l~~~~i~~~~l-~~l~~~~~~L~~L~l~~c~ 436 (529)
++++. ++......+.. ..+.|+.|++++|++....+ ......+++|+.|++.++.
T Consensus 271 l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 65553 33222111111 12456666666665442111 1112245566666665543
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=2.8e-14 Score=143.23 Aligned_cols=281 Identities=14% Similarity=0.070 Sum_probs=188.3
Q ss_pred CceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcC
Q 009671 112 DVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNC 191 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~ 191 (529)
+++++|+++. ..++. +....++|+.|+++++ .++.. ....++|++|++++|.++. +.. +..+
T Consensus 91 ~~L~~L~l~~----n~l~~-----lp~~~~~L~~L~l~~n-~l~~l-----~~~~~~L~~L~L~~n~l~~--lp~-~~~l 152 (454)
T 1jl5_A 91 PHLESLVASC----NSLTE-----LPELPQSLKSLLVDNN-NLKAL-----SDLPPLLEYLGVSNNQLEK--LPE-LQNS 152 (454)
T ss_dssp TTCSEEECCS----SCCSS-----CCCCCTTCCEEECCSS-CCSCC-----CSCCTTCCEEECCSSCCSS--CCC-CTTC
T ss_pred CCCCEEEccC----CcCCc-----cccccCCCcEEECCCC-ccCcc-----cCCCCCCCEEECcCCCCCC--Ccc-cCCC
Confidence 6789999973 33322 1123578999999885 44321 1223689999999998753 322 5678
Q ss_pred CCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcC
Q 009671 192 STLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVT 271 (529)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 271 (529)
++|++|+++++. +.. +.. ...+|+.|++.++.... ++ .+..+++|++|+++++.-.. +....+
T Consensus 153 ~~L~~L~l~~N~-l~~--lp~------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~------l~~~~~ 215 (454)
T 1jl5_A 153 SFLKIIDVDNNS-LKK--LPD------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK------LPDLPL 215 (454)
T ss_dssp TTCCEEECCSSC-CSC--CCC------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS------CCCCCT
T ss_pred CCCCEEECCCCc-Ccc--cCC------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc------CCCCcC
Confidence 999999999873 332 221 23588999888875544 33 46789999999999875221 112335
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccc
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNL 351 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L 351 (529)
+|++|++++|.++... .+..+++|+.|+++++. ++.. ....++|+.|++++|....+.. ..++|
T Consensus 216 ~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~-l~~l-----~~~~~~L~~L~l~~N~l~~l~~--------~~~~L 279 (454)
T 1jl5_A 216 SLESIVAGNNILEELP--ELQNLPFLTTIYADNNL-LKTL-----PDLPPSLEALNVRDNYLTDLPE--------LPQSL 279 (454)
T ss_dssp TCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC-CSSC-----CSCCTTCCEEECCSSCCSCCCC--------CCTTC
T ss_pred cccEEECcCCcCCccc--ccCCCCCCCEEECCCCc-CCcc-----cccccccCEEECCCCcccccCc--------ccCcC
Confidence 7999999999877433 47789999999999873 3321 1125789999999876544432 34789
Q ss_pred cceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEE
Q 009671 352 QELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVK 431 (529)
Q Consensus 352 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~ 431 (529)
+.|++++|.++... ...++|+.|+++++. ++. +....++|+.|++++|.++. +...+++|+.|+
T Consensus 280 ~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~-l~~-----i~~~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~ 343 (454)
T 1jl5_A 280 TFLDVSENIFSGLS-----ELPPNLYYLNASSNE-IRS-----LCDLPPSLEELNVSNNKLIE-----LPALPPRLERLI 343 (454)
T ss_dssp CEEECCSSCCSEES-----CCCTTCCEEECCSSC-CSE-----ECCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEE
T ss_pred CEEECcCCccCccc-----CcCCcCCEEECcCCc-CCc-----ccCCcCcCCEEECCCCcccc-----ccccCCcCCEEE
Confidence 99999999877621 223689999998875 332 11112589999999998764 223467899999
Q ss_pred eccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCcccc
Q 009671 432 VKKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQE 474 (529)
Q Consensus 432 l~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~ 474 (529)
+++|. ++. .|. ....++.+++++|.+..
T Consensus 344 L~~N~-l~~---------lp~-----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 344 ASFNH-LAE---------VPE-----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSSC-CSC---------CCC-----CCTTCCEEECCSSCCSS
T ss_pred CCCCc-ccc---------ccc-----hhhhccEEECCCCCCCc
Confidence 99887 552 111 12446667777777654
No 58
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.52 E-value=2.5e-13 Score=132.21 Aligned_cols=194 Identities=17% Similarity=0.139 Sum_probs=146.8
Q ss_pred CCCCCeEeccccCCCchHHHHHHHhh----cCCccEEEeeccccChHHHHHhhc-CCCCCeEEecCCCCCChhhHHHHHH
Q 009671 244 AKNLRTLKLFRCSGDWDKLLQLVTDR----VTSLVEIHLERIQVTDVGLAAISN-CLDLEIMHLVKTPECTNLGLAAVAE 318 (529)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~~~~~~l~~l~~ 318 (529)
.+.|++|++++|. +.......+... .++|++|++++|.+++.++..+.. +++|+.|+|++| .+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 4789999999975 555444444333 368999999999999998887754 679999999998 678887777654
Q ss_pred ----hCCCCcEEEecCcccCccChHHHHHHH---hcCccccceEeecccCcHHHHHHHH---hcCCCCCEEEccCCCCCC
Q 009671 319 ----RCKLLRKLHIDGWKANRIGDEGLIAVA---KCCPNLQELVLIGVNPTRVSLEVLA---SNCQNLERLALCGSDTVG 388 (529)
Q Consensus 319 ----~~~~L~~L~L~~~~~~~i~~~~l~~~~---~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~ 388 (529)
..++|++|+|++| .+++.+...++ ..+++|++|+|++|.+++.+...+. ..+++|++|++++|. ++
T Consensus 149 ~L~~~~~~L~~L~Ls~n---~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN---PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHSTTCCCCEEECCSS---CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHhcCCccceeeCCCC---CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 3578999999986 46666655553 5678999999999999998866553 467899999999985 89
Q ss_pred hhHHHHHHH---cCCcCCEEEeccCCCCHHHHHHHHhcCC-C---ccEEE--eccCCCCCHHHHH
Q 009671 389 DVEISCIAA---KCVALKKLCIKSCPVSDHGMEALAGGCP-N---LVKVK--VKKCRAVTTEGAD 444 (529)
Q Consensus 389 ~~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~l~~~~~-~---L~~L~--l~~c~~i~~~~~~ 444 (529)
+.+...++. .+++|++|+|++|.|++.+...+..... . |+.+. +.++. ++++...
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~-~~~~~~~ 288 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA-VSEYWSV 288 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC-----CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc-cCHHHHH
Confidence 888766654 4689999999999999999998875321 2 66766 55555 6655333
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=140.24 Aligned_cols=281 Identities=15% Similarity=0.116 Sum_probs=174.6
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCc
Q 009671 139 KCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGV 218 (529)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (529)
.|+.....+.++. .++.... ...++|++|+++++.++.... ..+..+++|++|++.++ .++..
T Consensus 29 ~C~~~~~c~~~~~-~l~~iP~----~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~---------- 91 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSIPS----GLTEAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSN-GINTI---------- 91 (353)
T ss_dssp EECTTSEEECCST-TCSSCCT----TCCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTS-CCCEE----------
T ss_pred CCCCCeEeeCCCC-Ccccccc----cccccCcEEECCCCcCcccCH-HHhccCCCCCEEECCCC-ccCcc----------
Confidence 4566666666542 3322110 123578888888887643211 12346788888888765 23321
Q ss_pred ccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHH-HHhhcCCCC
Q 009671 219 AASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGL-AAISNCLDL 297 (529)
Q Consensus 219 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L 297 (529)
.+..+..+++|++|+++++. +.. ........+++|++|++++|.++.... ..+..+++|
T Consensus 92 ------------------~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 92 ------------------EEDSFSSLGSLEHLDLSYNY-LSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp ------------------CTTTTTTCTTCCEEECCSSC-CSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred ------------------CHhhcCCCCCCCEEECCCCc-CCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 11234567888888888764 221 112234567888999998887775444 346678899
Q ss_pred CeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCC
Q 009671 298 EIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLE 377 (529)
Q Consensus 298 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~ 377 (529)
+.|+++++..++......+ ..+++|++|++++|....+.... ...+++|++|++++|.+...... +...+++|+
T Consensus 152 ~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~ 225 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEPKS----LKSIQNVSHLILHMKQHILLLEI-FVDVTSSVE 225 (353)
T ss_dssp CEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECTTT----TTTCSEEEEEEEECSCSTTHHHH-HHHHTTTEE
T ss_pred cEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCHHH----HhccccCCeecCCCCccccchhh-hhhhccccc
Confidence 9999988743433322222 34788999999887544443222 24578999999999988655433 336789999
Q ss_pred EEEccCCCCCChhHHHH--HHHcCCcCCEEEeccCCCCHHHHHHHH---hcCCCccEEEeccCCCCCHHHHHHHHhcCCc
Q 009671 378 RLALCGSDTVGDVEISC--IAAKCVALKKLCIKSCPVSDHGMEALA---GGCPNLVKVKVKKCRAVTTEGADWLRARREY 452 (529)
Q Consensus 378 ~L~l~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~ 452 (529)
+|+++++. ++...... ....++.++.+++.++.+++.++..+. ..+++|+.|++++|. ++......+ ..
T Consensus 226 ~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~-~~--- 299 (353)
T 2z80_A 226 CLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIF-DR--- 299 (353)
T ss_dssp EEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTT-TT---
T ss_pred EEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHH-hc---
Confidence 99999884 43322111 123467899999999999987665543 468999999999997 663111111 11
Q ss_pred EEEEeccCccccccccCCcccc
Q 009671 453 VVVNLDSGEAEHQDASDGGVQE 474 (529)
Q Consensus 453 l~l~l~~~~~~~ld~~~~~~~~ 474 (529)
...+..+++++|.+..
T Consensus 300 ------l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 300 ------LTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ------CTTCCEEECCSSCBCC
T ss_pred ------CCCCCEEEeeCCCccC
Confidence 2346666777776654
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.49 E-value=1.9e-15 Score=145.80 Aligned_cols=244 Identities=17% Similarity=0.135 Sum_probs=149.1
Q ss_pred CccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccC
Q 009671 142 NLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAAS 221 (529)
Q Consensus 142 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 221 (529)
+++.++++++ .++... ....++|++|+++++.+.... ...+..+++|++|++.++. ++.
T Consensus 34 ~l~~l~~~~~-~l~~ip----~~~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~-------------- 92 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVP----KEISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISK-------------- 92 (332)
T ss_dssp ETTEEECCSS-CCSSCC----SCCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCE--------------
T ss_pred cCCEEECCCC-CccccC----CCCCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCc--------------
Confidence 5777877764 332110 012357888888887754221 1123467778888877652 222
Q ss_pred ccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEE
Q 009671 222 SLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMH 301 (529)
Q Consensus 222 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 301 (529)
..+..+..+++|++|+++++.- ..-. ....++|++|++++|.++......+..+++|+.|+
T Consensus 93 --------------~~~~~~~~l~~L~~L~L~~n~l-~~l~----~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 93 --------------IHEKAFSPLRKLQKLYISKNHL-VEIP----PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp --------------ECGGGSTTCTTCCEEECCSSCC-CSCC----SSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred --------------cCHhHhhCcCCCCEEECCCCcC-CccC----ccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 1123346678888888887642 1100 01125788999988887766655677788999999
Q ss_pred ecCCCCCChhhHH-HHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEE
Q 009671 302 LVKTPECTNLGLA-AVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 302 L~~~~~~~~~~l~-~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
++++. ++..+.. .....+ +|+.|+++++....+... ..++|++|++++|.++......+ ..+++|++|+
T Consensus 154 l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-------~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~ 223 (332)
T 2ft3_A 154 MGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-------LPETLNELHLDHNKIQAIELEDL-LRYSKLYRLG 223 (332)
T ss_dssp CCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-------SCSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCB
T ss_pred CCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCcc-------ccCCCCEEECCCCcCCccCHHHh-cCCCCCCEEE
Confidence 98873 3321111 111123 788888888765444321 23689999999888776543334 5778899999
Q ss_pred ccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCH
Q 009671 381 LCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTT 440 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~ 440 (529)
++++. ++...... ...+++|+.|++++|.++.. ...+ ..+++|+.|++.++. ++.
T Consensus 224 L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~l-p~~l-~~l~~L~~L~l~~N~-l~~ 278 (332)
T 2ft3_A 224 LGHNQ-IRMIENGS-LSFLPTLRELHLDNNKLSRV-PAGL-PDLKLLQVVYLHTNN-ITK 278 (332)
T ss_dssp CCSSC-CCCCCTTG-GGGCTTCCEEECCSSCCCBC-CTTG-GGCTTCCEEECCSSC-CCB
T ss_pred CCCCc-CCcCChhH-hhCCCCCCEEECCCCcCeec-Chhh-hcCccCCEEECCCCC-CCc
Confidence 98874 33321111 23578899999999886631 1123 358889999998887 654
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=1.1e-15 Score=155.04 Aligned_cols=238 Identities=13% Similarity=0.076 Sum_probs=138.0
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCc
Q 009671 139 KCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGV 218 (529)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (529)
.+++|+.|+|+++ .++..... .+..+++|++|+|++|.++... . +..+++|+.|+++++. ++.
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~----------- 94 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQE----------- 94 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGG-GGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEE-----------
T ss_pred cCCCccEEEeeCC-cCCCCCHH-HHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCC-----------
Confidence 3457777777764 44332111 1235677777777777653211 0 4466777777777652 211
Q ss_pred ccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCC
Q 009671 219 AASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLE 298 (529)
Q Consensus 219 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 298 (529)
+...++|++|++++|.-.... ...+++|+.|++++|.++......++.+++|+
T Consensus 95 ----------------------l~~~~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 147 (487)
T 3oja_A 95 ----------------------LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147 (487)
T ss_dssp ----------------------EEECTTCCEEECCSSCCCCEE-----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEE
T ss_pred ----------------------CCCCCCcCEEECcCCcCCCCC-----ccccCCCCEEECCCCCCCCCCchhhcCCCCCC
Confidence 012367777777765421110 12346677888877777766555566677888
Q ss_pred eEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCE
Q 009671 299 IMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLER 378 (529)
Q Consensus 299 ~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~ 378 (529)
.|+++++ .++......+...+++|+.|+|++|....+.. ...+++|+.|++++|.++..... +..+++|+.
T Consensus 148 ~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~ 218 (487)
T 3oja_A 148 YLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTW 218 (487)
T ss_dssp EEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSE
T ss_pred EEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccccc------cccCCCCCEEECCCCCCCCCCHh--HcCCCCccE
Confidence 8888776 44444333444456788888887765433311 11367788888888877653222 256777888
Q ss_pred EEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEe
Q 009671 379 LALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKV 432 (529)
Q Consensus 379 L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l 432 (529)
|++++|. ++. +......+++|+.|++++|++....+......++.|+.+++
T Consensus 219 L~Ls~N~-l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 219 ISLRNNK-LVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp EECTTSC-CCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred EEecCCc-Ccc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 8887764 332 11112346778888888888774444444445555555544
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.48 E-value=5.6e-15 Score=148.30 Aligned_cols=229 Identities=16% Similarity=0.092 Sum_probs=144.4
Q ss_pred CCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCC
Q 009671 167 KGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKN 246 (529)
Q Consensus 167 ~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 246 (529)
++++.|+|++|.+..... ..+..+++|+.|+|+++. +... .+..+..+++
T Consensus 64 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~i----------------------------~~~~~~~l~~ 113 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNH-IRTI----------------------------EIGAFNGLAN 113 (440)
T ss_dssp TTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSC-CCEE----------------------------CGGGGTTCSS
T ss_pred CCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCc-CCcc----------------------------ChhhccCCcc
Confidence 578889998888643221 124467888888888762 3221 1123456677
Q ss_pred CCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEE
Q 009671 247 LRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKL 326 (529)
Q Consensus 247 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L 326 (529)
|++|+++++. +... .......+++|++|++++|.++......+..+++|+.|+++++..+....... ...+++|+.|
T Consensus 114 L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L 190 (440)
T 3zyj_A 114 LNTLELFDNR-LTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYL 190 (440)
T ss_dssp CCEEECCSSC-CSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCSSCCEE
T ss_pred CCEEECCCCc-CCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch-hhcccccCee
Confidence 7777777653 2110 01122355678888888877776555556678888888888765544332212 2346788888
Q ss_pred EecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEE
Q 009671 327 HIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLC 406 (529)
Q Consensus 327 ~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~ 406 (529)
++++|....+.. ...+++|+.|+|++|.++......+ ..+++|++|+++++. ++...... ...+++|+.|+
T Consensus 191 ~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~ 261 (440)
T 3zyj_A 191 NLAMCNLREIPN------LTPLIKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQ-IQVIERNA-FDNLQSLVEIN 261 (440)
T ss_dssp ECTTSCCSSCCC------CTTCSSCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTS-STTCTTCCEEE
T ss_pred cCCCCcCccccc------cCCCcccCEEECCCCccCccChhhh-ccCccCCEEECCCCc-eeEEChhh-hcCCCCCCEEE
Confidence 888876555542 2456788888888887776543334 677888888888774 43322111 23478889999
Q ss_pred eccCCCCHHHHHHHHhcCCCccEEEeccCCCC
Q 009671 407 IKSCPVSDHGMEALAGGCPNLVKVKVKKCRAV 438 (529)
Q Consensus 407 l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i 438 (529)
|++|.++......+ ..+++|+.|++.+++..
T Consensus 262 L~~N~l~~~~~~~~-~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 262 LAHNNLTLLPHDLF-TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSCCCCCCTTTT-SSCTTCCEEECCSSCEE
T ss_pred CCCCCCCccChhHh-ccccCCCEEEcCCCCcc
Confidence 98888664332222 35788889988887633
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.48 E-value=6.3e-15 Score=141.06 Aligned_cols=248 Identities=14% Similarity=0.079 Sum_probs=151.5
Q ss_pred cchHHHhccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccCh
Q 009671 102 PMIPSLFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGA 181 (529)
Q Consensus 102 ~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 181 (529)
..+..++..+++|++|+++ ...++......+ ..+++|+.|+++++ .++... . +..+++|++|++++|.++.
T Consensus 24 ~~~~~~~~~~~~L~~L~L~----~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLS----GNPLSQISAADL-APFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp HHHHHHHTTGGGCSEEECT----TSCCCCCCHHHH-TTCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSSEEEE
T ss_pred hhHHHHhccCCCCCEEECc----CCccCcCCHHHh-hCCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCCcccc
Confidence 3445667777899999998 444443322333 45899999999986 443221 1 4568999999999998653
Q ss_pred HHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchH
Q 009671 182 KGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDK 261 (529)
Q Consensus 182 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 261 (529)
. ...++|++|++.++. +..... ..+++|++|+++++.-...
T Consensus 95 l------~~~~~L~~L~l~~n~-l~~~~~-------------------------------~~~~~L~~L~l~~N~l~~~- 135 (317)
T 3o53_A 95 L------LVGPSIETLHAANNN-ISRVSC-------------------------------SRGQGKKNIYLANNKITML- 135 (317)
T ss_dssp E------EECTTCCEEECCSSC-CSEEEE-------------------------------CCCSSCEEEECCSSCCCSG-
T ss_pred c------cCCCCcCEEECCCCc-cCCcCc-------------------------------cccCCCCEEECCCCCCCCc-
Confidence 2 145899999999863 333111 1245566666665432110
Q ss_pred HHHHHHhhcCCccEEEeeccccChHHHHHhh-cCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHH
Q 009671 262 LLQLVTDRVTSLVEIHLERIQVTDVGLAAIS-NCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEG 340 (529)
Q Consensus 262 ~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~ 340 (529)
.......+++|+.|++++|.++......+. .+++|+.|+++++. ++... ... .+++|++|++++|....+...
T Consensus 136 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~-~l~~L~~L~Ls~N~l~~l~~~- 209 (317)
T 3o53_A 136 -RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--GQV-VFAKLKTLDLSSNKLAFMGPE- 209 (317)
T ss_dssp -GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--CCC-CCTTCCEEECCSSCCCEECGG-
T ss_pred -cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc--ccc-ccccCCEEECCCCcCCcchhh-
Confidence 001112356677777777766665444443 46777777777763 33221 111 257788888877765544432
Q ss_pred HHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccC
Q 009671 341 LIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSC 410 (529)
Q Consensus 341 l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 410 (529)
...+++|+.|++++|.++... .....+++|+.|+++++. ++...+......+++|+.|++.++
T Consensus 210 ----~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 210 ----FQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp ----GGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----hcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCc
Confidence 235678888888888776421 112567788888888775 443345555556777777777644
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=4.2e-15 Score=149.80 Aligned_cols=228 Identities=16% Similarity=0.091 Sum_probs=145.2
Q ss_pred CCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCC
Q 009671 167 KGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKN 246 (529)
Q Consensus 167 ~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 246 (529)
++|++|+|++|.+.... ...+..+++|+.|+++++ .+.... +..+..+++
T Consensus 75 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~----------------------------~~~~~~l~~ 124 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRN-SIRQIE----------------------------VGAFNGLAS 124 (452)
T ss_dssp TTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEEC----------------------------TTTTTTCTT
T ss_pred CCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCC-ccCCcC----------------------------hhhccCccc
Confidence 57999999998864321 112457888999998876 233211 123355677
Q ss_pred CCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEE
Q 009671 247 LRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKL 326 (529)
Q Consensus 247 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L 326 (529)
|++|+++++. +.. ........+++|++|++++|.++......+..+++|+.|+++++..+....... ...+++|+.|
T Consensus 125 L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L 201 (452)
T 3zyi_A 125 LNTLELFDNW-LTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYL 201 (452)
T ss_dssp CCEEECCSSC-CSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEE
T ss_pred CCEEECCCCc-CCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEE
Confidence 7777777653 111 011122346678888888877776555556678888888888765544332222 2346888888
Q ss_pred EecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEE
Q 009671 327 HIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLC 406 (529)
Q Consensus 327 ~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~ 406 (529)
++++|....+.. ...+++|+.|++++|.++......+ ..+++|+.|+++++. ++...... ...+++|+.|+
T Consensus 202 ~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~ 272 (452)
T 3zyi_A 202 NLGMCNIKDMPN------LTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQ-VSLIERNA-FDGLASLVELN 272 (452)
T ss_dssp ECTTSCCSSCCC------CTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEE
T ss_pred ECCCCccccccc------ccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCc-CceECHHH-hcCCCCCCEEE
Confidence 888876554432 2356888899998888776544344 678889999998874 33322111 23578899999
Q ss_pred eccCCCCHHHHHHHHhcCCCccEEEeccCCC
Q 009671 407 IKSCPVSDHGMEALAGGCPNLVKVKVKKCRA 437 (529)
Q Consensus 407 l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 437 (529)
|++|.++...... ...+++|+.|++.+++.
T Consensus 273 L~~N~l~~~~~~~-~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 273 LAHNNLSSLPHDL-FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCSSCCSCCCTTS-STTCTTCCEEECCSSCE
T ss_pred CCCCcCCccChHH-hccccCCCEEEccCCCc
Confidence 9998866432222 23578899999988763
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=8e-15 Score=140.82 Aligned_cols=225 Identities=19% Similarity=0.226 Sum_probs=110.2
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCc
Q 009671 139 KCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGV 218 (529)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 218 (529)
..++++.|+++++ .++. +..-...+++|++|++++|.+. .+...+..+++|++|+++++. +..
T Consensus 79 ~~~~l~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~~----------- 141 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQ--FPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LRA----------- 141 (328)
T ss_dssp TSTTCCEEEEESS-CCSS--CCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CCC-----------
T ss_pred cccceeEEEccCC-Cchh--cChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-ccc-----------
Confidence 3578888888874 4431 1111224778888888888765 223334567788888887652 221
Q ss_pred ccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHH--------HhhcCCccEEEeeccccChHHHHH
Q 009671 219 AASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLV--------TDRVTSLVEIHLERIQVTDVGLAA 290 (529)
Q Consensus 219 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l--------~~~~~~L~~L~l~~~~l~~~~~~~ 290 (529)
++..+..+++|++|++++|....... ..+ ...+++|+.|++++|.++.. ...
T Consensus 142 ------------------lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~ 201 (328)
T 4fcg_A 142 ------------------LPASIASLNRLRELSIRACPELTELP-EPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PAS 201 (328)
T ss_dssp ------------------CCGGGGGCTTCCEEEEEEETTCCCCC-SCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGG
T ss_pred ------------------CcHHHhcCcCCCEEECCCCCCccccC-hhHhhccchhhhccCCCCCEEECcCCCcCcc-hHh
Confidence 12334667888888888865322100 000 01234455555555444311 112
Q ss_pred hhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHH
Q 009671 291 ISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLA 370 (529)
Q Consensus 291 l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~ 370 (529)
+..+ ++|+.|++++|....+.. ....+++|++|++++|.+.......+
T Consensus 202 l~~l--------------------------~~L~~L~L~~N~l~~l~~-----~l~~l~~L~~L~Ls~n~~~~~~p~~~- 249 (328)
T 4fcg_A 202 IANL--------------------------QNLKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGCTALRNYPPIF- 249 (328)
T ss_dssp GGGC--------------------------TTCCEEEEESSCCCCCCG-----GGGGCTTCCEEECTTCTTCCBCCCCT-
T ss_pred hcCC--------------------------CCCCEEEccCCCCCcCch-----hhccCCCCCEEECcCCcchhhhHHHh-
Confidence 3334 444444444443322222 12234455555555544332211111
Q ss_pred hcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccC
Q 009671 371 SNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKC 435 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c 435 (529)
..+++|++|++++|...+... .....+++|+.|+|++|++.......+. .+++|+.+.+...
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPH 311 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGG
T ss_pred cCCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHH
Confidence 445566666666554322111 1123456666666666654333223333 4566666655543
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.46 E-value=5.8e-15 Score=139.13 Aligned_cols=185 Identities=19% Similarity=0.138 Sum_probs=114.8
Q ss_pred hhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccc-cChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHh
Q 009671 241 IIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQ-VTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAER 319 (529)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~ 319 (529)
+..+++|++|+++++. +.... ......+++|++|++++|. ++......+..+++|++|+++++. ++.... .....
T Consensus 52 ~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~ 127 (285)
T 1ozn_A 52 FRACRNLTILWLHSNV-LARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGP-GLFRG 127 (285)
T ss_dssp TTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT-TTTTT
T ss_pred cccCCCCCEEECCCCc-cceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECH-hHhhC
Confidence 3556677777776653 21110 1112345667777777774 665545556667788888887763 222211 11234
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|++|+++++....+.... ...+++|++|++++|.++......+ ..+++|++|+++++. ++...... ...+
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~-~~~l 200 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNR-VAHVHPHA-FRDL 200 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CCEECTTT-TTTC
T ss_pred CcCCCEEECCCCcccccCHhH----hccCCCccEEECCCCcccccCHHHh-cCccccCEEECCCCc-ccccCHhH-ccCc
Confidence 678888888876554443321 2356788888888887765433333 567888999988874 44332222 2347
Q ss_pred CcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCC
Q 009671 400 VALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRA 437 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 437 (529)
++|+.|++++|.+++.....+. .+++|+.|++.+++-
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALA-PLRALQYLRLNDNPW 237 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHT-TCTTCCEEECCSSCE
T ss_pred ccccEeeCCCCcCCcCCHHHcc-cCcccCEEeccCCCc
Confidence 8899999999987765444444 688999999998873
No 67
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.45 E-value=3.8e-16 Score=149.18 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCccEEecCCCCCCCHH-HHHHHHhcCCCCCEEEecC-cccChHHHHHHHhcCCCCCEEecCCc
Q 009671 141 RNLTRLKLRACRELTDA-GMSVFAKNCKGLKKLSCGS-CTFGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~-~l~~l~~~~~~L~~L~L~~-~~~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
.++++|+++++ .+... .+...+..+++|++|++++ +.+... +...+..+++|++|++.++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCC
Confidence 46777777764 33320 1111233467777777774 443211 1112345666666666654
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.45 E-value=1.1e-15 Score=145.85 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=60.4
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|++|++++|.... .........+++|++|++++|.++......+ ..+++|++|+++++. ++...... ...+
T Consensus 149 l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~-~~~l 222 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNN-FFSLDTFP-YKCL 222 (306)
T ss_dssp CTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSC-CSBCCSGG-GTTC
T ss_pred CcCCCEEECCCCcccc---ccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCCCc-cCccChhh-ccCc
Confidence 4556666665543211 0011112345666777777666655433233 556777777777664 32211111 2346
Q ss_pred CcCCEEEeccCCCCHHHHHHHHhcC-CCccEEEeccCC
Q 009671 400 VALKKLCIKSCPVSDHGMEALAGGC-PNLVKVKVKKCR 436 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~ 436 (529)
++|+.|++++|.+++.....+. .+ ++|+.|++.+++
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCC-CCCTTCCEEECTTCC
T ss_pred ccCCEeECCCCCCcccCHHHHH-hhhccCCEEEccCCC
Confidence 7888888888876654433343 34 478888888877
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=5.4e-13 Score=138.18 Aligned_cols=246 Identities=15% Similarity=0.093 Sum_probs=151.3
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCccc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAA 220 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 220 (529)
++|+.|+++++ .++. +...+++|++|+|++|.++. +. ..+++|++|+++++. ++. +.. .+
T Consensus 61 ~~L~~L~L~~N-~l~~-----lp~~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~-l~~--l~~------~l 120 (622)
T 3g06_A 61 AHITTLVIPDN-NLTS-----LPALPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTH--LPA------LP 120 (622)
T ss_dssp TTCSEEEECSC-CCSC-----CCCCCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCC-CCC--CCC------CC
T ss_pred CCCcEEEecCC-CCCC-----CCCcCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCc-CCC--CCC------CC
Confidence 45666666654 3321 11134566666666665431 11 145566666665542 221 100 23
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeE
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 300 (529)
++|+.|.+.++.... ++ ..+++|++|++++|.- .. +....++|+.|++++|.++... ..+++|+.|
T Consensus 121 ~~L~~L~L~~N~l~~-lp---~~l~~L~~L~Ls~N~l-~~-----l~~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L 186 (622)
T 3g06_A 121 SGLCKLWIFGNQLTS-LP---VLPPGLQELSVSDNQL-AS-----LPALPSELCKLWAYNNQLTSLP----MLPSGLQEL 186 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEE
T ss_pred CCcCEEECCCCCCCc-CC---CCCCCCCEEECcCCcC-CC-----cCCccCCCCEEECCCCCCCCCc----ccCCCCcEE
Confidence 455555555443222 11 2347888888888642 21 1124567899999888777643 346889999
Q ss_pred EecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEE
Q 009671 301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 301 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
+++++. ++.. ....++|+.|++++|....+.. .+++|+.|++++|.++... ..+++|+.|+
T Consensus 187 ~Ls~N~-l~~l-----~~~~~~L~~L~L~~N~l~~l~~--------~~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~ 247 (622)
T 3g06_A 187 SVSDNQ-LASL-----PTLPSELYKLWAYNNRLTSLPA--------LPSGLKELIVSGNRLTSLP-----VLPSELKELM 247 (622)
T ss_dssp ECCSSC-CSCC-----CCCCTTCCEEECCSSCCSSCCC--------CCTTCCEEECCSSCCSCCC-----CCCTTCCEEE
T ss_pred ECCCCC-CCCC-----CCccchhhEEECcCCcccccCC--------CCCCCCEEEccCCccCcCC-----CCCCcCcEEE
Confidence 998873 3321 1125789999998876554432 3578999999999887633 5678899999
Q ss_pred ccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHh
Q 009671 381 LCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRA 448 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 448 (529)
+++|. ++.- . ..+++|+.|++++|.++.. ...+ ..+++|+.|+|.+|+ ++......+..
T Consensus 248 Ls~N~-L~~l--p---~~~~~L~~L~Ls~N~L~~l-p~~l-~~l~~L~~L~L~~N~-l~~~~~~~l~~ 306 (622)
T 3g06_A 248 VSGNR-LTSL--P---MLPSGLLSLSVYRNQLTRL-PESL-IHLSSETTVNLEGNP-LSERTLQALRE 306 (622)
T ss_dssp CCSSC-CSCC--C---CCCTTCCEEECCSSCCCSC-CGGG-GGSCTTCEEECCSCC-CCHHHHHHHHH
T ss_pred CCCCC-CCcC--C---cccccCcEEeCCCCCCCcC-CHHH-hhccccCEEEecCCC-CCCcCHHHHHh
Confidence 98884 4321 1 1578899999999987732 1223 468999999999998 88776665554
No 70
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=1.1e-15 Score=145.86 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=50.6
Q ss_pred CceeEEEeeccCCccccCH--HHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHh
Q 009671 112 DVVTKLALKCDRRSVSVGD--DALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLD 189 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~--~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~ 189 (529)
.+++.|+++ ...+.. .....+ ..+++|++|+++++..+....... +..+++|++|++++|.+... +...+.
T Consensus 50 ~~l~~L~L~----~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~-~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLS----GLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGA-IPDFLS 122 (313)
T ss_dssp CCEEEEEEE----CCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEE-CCGGGG
T ss_pred ceEEEEECC----CCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCc-CCHHHh
Confidence 568888888 333332 111223 347899999998422332211112 34688999999998886421 122345
Q ss_pred cCCCCCEEecCCc
Q 009671 190 NCSTLEELSVKRL 202 (529)
Q Consensus 190 ~~~~L~~L~l~~~ 202 (529)
.+++|++|+++++
T Consensus 123 ~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 123 QIKTLVTLDFSYN 135 (313)
T ss_dssp GCTTCCEEECCSS
T ss_pred CCCCCCEEeCCCC
Confidence 7888888888875
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.42 E-value=1.1e-14 Score=138.82 Aligned_cols=134 Identities=10% Similarity=0.059 Sum_probs=61.7
Q ss_pred CCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcc
Q 009671 271 TSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPN 350 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~ 350 (529)
++|+.|++++|.++......+..+++|++|+++++. +...........+++|+.|++++|....+.... ...+++
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~ 200 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSS 200 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTT
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCHHH----hcCCCC
Confidence 444444444444333333333445555555555441 111111111223455666666555433332211 123556
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC-CcCCEEEeccCCC
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC-VALKKLCIKSCPV 412 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~-~~L~~L~l~~~~i 412 (529)
|++|++++|.++......+ ..+++|++|+++++. ++......+. .+ ++|+.|++++|++
T Consensus 201 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~-~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNH-IMTSKKQELQ-HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTSC-CCBCSSSSCC-CCCTTCCEEECTTCCE
T ss_pred CCEEECCCCccCccChhhc-cCcccCCEeECCCCC-CcccCHHHHH-hhhccCCEEEccCCCe
Confidence 6666666665544322222 456667777776663 3222111111 23 3677777777764
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=4e-14 Score=135.05 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=88.7
Q ss_pred hcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHH--HHHhCCCCcEEEecCcccCccChHHHHHHHh
Q 009671 269 RVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAA--VAERCKLLRKLHIDGWKANRIGDEGLIAVAK 346 (529)
Q Consensus 269 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~--l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~ 346 (529)
.+++|++|++++|.++......+..+++|++|+++++.-....++.. ....+++|++|++++|....+. .....+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT-GVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH-HHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH-HHHHHHHh
Confidence 45667777777776665555555667777777777763222222221 1134567777777765432221 11222344
Q ss_pred cCccccceEeecccCcHHHHHHHHhc---CCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhc
Q 009671 347 CCPNLQELVLIGVNPTRVSLEVLASN---CQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGG 423 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~ 423 (529)
.+++|++|++++|.+.+.....+ .. +++|++|++++|. ++.- .. .-+++|+.|++++|.++.. .. ...
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-l~~l--p~--~~~~~L~~L~Ls~N~l~~~--~~-~~~ 292 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAG-LEQV--PK--GLPAKLRVLDLSSNRLNRA--PQ-PDE 292 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSC-CCSC--CS--CCCSCCSCEECCSCCCCSC--CC-TTS
T ss_pred cCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCC-CCch--hh--hhcCCCCEEECCCCcCCCC--ch-hhh
Confidence 56777777777776655321111 22 2577777777664 3311 00 0135777777777776642 11 235
Q ss_pred CCCccEEEeccCCCCCH
Q 009671 424 CPNLVKVKVKKCRAVTT 440 (529)
Q Consensus 424 ~~~L~~L~l~~c~~i~~ 440 (529)
+++|+.|++.+++ +++
T Consensus 293 l~~L~~L~L~~N~-l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNP-FLV 308 (310)
T ss_dssp CCCCSCEECSSTT-TSC
T ss_pred CCCccEEECcCCC-CCC
Confidence 6777777777766 543
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=9.1e-13 Score=125.29 Aligned_cols=171 Identities=20% Similarity=0.179 Sum_probs=117.3
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCK 321 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 321 (529)
..+++|+.|++++|.-..-.. ...+++|+.|++++|.+++.. .+..+++|+.|+++++. ++... . ...++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~-l~~~~--~-l~~l~ 129 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQ-ITDVT--P-LAGLS 129 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSC-CCCCG--G-GTTCT
T ss_pred hccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCC-CCCch--h-hcCCC
Confidence 456777888887764221111 456677888888887776542 46678888888888873 33322 2 34578
Q ss_pred CCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCc
Q 009671 322 LLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVA 401 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 401 (529)
+|+.|++++|....+.. ...+++|+.|++++|.+++... ...+++|+.|+++++. +++... ...+++
T Consensus 130 ~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~ 196 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNK-ISDISP---LASLPN 196 (308)
T ss_dssp TCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCGG---GGGCTT
T ss_pred CCCEEECCCCccCcCcc------ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCc-cCcChh---hcCCCC
Confidence 88888888876544432 4467889999998888776432 3678889999998875 433221 346889
Q ss_pred CCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCC
Q 009671 402 LKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVT 439 (529)
Q Consensus 402 L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 439 (529)
|+.|++++|.+++.. .+ ..+++|+.|++.+|. ++
T Consensus 197 L~~L~L~~N~l~~~~--~l-~~l~~L~~L~l~~N~-i~ 230 (308)
T 1h6u_A 197 LIEVHLKNNQISDVS--PL-ANTSNLFIVTLTNQT-IT 230 (308)
T ss_dssp CCEEECTTSCCCBCG--GG-TTCTTCCEEEEEEEE-EE
T ss_pred CCEEEccCCccCccc--cc-cCCCCCCEEEccCCe-ee
Confidence 999999999877643 23 468899999999887 44
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.40 E-value=4.7e-14 Score=141.57 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=51.5
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCccc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAA 220 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 220 (529)
++++.|+|+++ .+....... +..+++|++|+|++|.+..... ..+..+++|++|++.++ .++..... .+ ..+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~~---~~l 135 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNS-FKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDN-RLTTIPNG-AF---VYL 135 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTT-TSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSS-CCSSCCTT-TS---CSC
T ss_pred CCCcEEEccCC-cCCeeCHHH-hhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCC-cCCeeCHh-Hh---hcc
Confidence 46677777664 443322222 2346777777777776542211 12345677777777765 22221100 00 133
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccC
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCS 256 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 256 (529)
++|+.|++.++.........+..+++|++|++.++.
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC
Confidence 444444444433332223334455566666665543
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.40 E-value=1.2e-13 Score=130.08 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred CCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcc
Q 009671 271 TSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPN 350 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~ 350 (529)
++|++|++++|.++......+..+++|++|+++++. ++..... ....+++|+.|++++|....+.... ...+++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~ 178 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDD-TFRDLGNLTHLFLHGNRISSVPERA----FRGLHS 178 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCEECTTT----TTTCTT
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHh-HhccCCCccEEECCCCcccccCHHH----hcCccc
Confidence 334444444444433333333445555555555441 2211110 1122455556665554433332211 123566
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCC
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCP 411 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 411 (529)
|+.|++++|.++......+ ..+++|+.|+++++. +++.... ....+++|+.|++++|+
T Consensus 179 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANN-LSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred cCEEECCCCcccccCHhHc-cCcccccEeeCCCCc-CCcCCHH-HcccCcccCEEeccCCC
Confidence 6666666665554433333 456667777776663 3332222 22346677777777776
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=8.2e-14 Score=140.34 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=102.6
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCccc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAA 220 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 220 (529)
++++.|+|+++ .++...... +..+++|++|+|++|.+..... ..+..+++|++|+|.++. ++.... ..+ ..+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-~~~---~~l 146 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADT-FRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNW-LTVIPS-GAF---EYL 146 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CSBCCT-TTS---SSC
T ss_pred CCccEEECcCC-cCceECHHH-cCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCc-CCccCh-hhh---ccc
Confidence 57788888764 444322222 2357788888888877543211 123467788888887652 222110 000 123
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeE
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 300 (529)
++|+.|++.++.........+..+++|+.|++.+|.. +.......+..+++|+.|
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~-------------------------l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-------------------------LEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-------------------------CCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC-------------------------ccccChhhccCCCCCCEE
Confidence 4444444444333322223344455555555554432 222222223334444455
Q ss_pred EecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEE
Q 009671 301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 301 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
+++++. ++.. .. ...+++|+.|+|++|....+.... ...+++|+.|++++|.++......+ ..+++|+.|+
T Consensus 202 ~L~~n~-l~~~--~~-~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 272 (452)
T 3zyi_A 202 NLGMCN-IKDM--PN-LTPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELN 272 (452)
T ss_dssp ECTTSC-CSSC--CC-CTTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEE
T ss_pred ECCCCc-cccc--cc-ccccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEE
Confidence 444441 1111 01 112445555555554433332221 1234555555555555543322222 4455566666
Q ss_pred ccCCCCCChhHHHHHHHcCCcCCEEEeccCC
Q 009671 381 LCGSDTVGDVEISCIAAKCVALKKLCIKSCP 411 (529)
Q Consensus 381 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 411 (529)
++++. ++.... .....+++|+.|+|++|+
T Consensus 273 L~~N~-l~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 273 LAHNN-LSSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSSC-CSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred CCCCc-CCccCh-HHhccccCCCEEEccCCC
Confidence 65552 221110 011234556666666655
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=4.3e-14 Score=143.29 Aligned_cols=240 Identities=15% Similarity=0.063 Sum_probs=121.7
Q ss_pred HhccCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHH
Q 009671 107 LFSRFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNA 186 (529)
Q Consensus 107 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~ 186 (529)
+...+++|+.|+++ .+.++......+ ..+++|+.|+|+++ .++... . +..+++|++|++++|.++..
T Consensus 29 l~~~~~~L~~L~Ls----~n~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l---- 95 (487)
T 3oja_A 29 LRQSAWNVKELDLS----GNPLSQISAADL-APFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNYVQEL---- 95 (487)
T ss_dssp TSTTGGGCCEEECC----SSCCCCCCGGGG-TTCTTCCEEECTTS-CCEEEE--E-CTTCTTCCEEECCSSEEEEE----
T ss_pred hcccCCCccEEEee----CCcCCCCCHHHH-hCCCCCCEEEeeCC-CCCCCc--c-cccCCCCCEEEecCCcCCCC----
Confidence 33445689999998 344433211223 45899999999986 444221 1 45689999999999987532
Q ss_pred HHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHH
Q 009671 187 VLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLV 266 (529)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l 266 (529)
...++|+.|+++++. +...... .+++|+.|++.++......+..+..+++
T Consensus 96 --~~~~~L~~L~L~~N~-l~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~-------------------- 145 (487)
T 3oja_A 96 --LVGPSIETLHAANNN-ISRVSCS-------RGQGKKNIYLANNKITMLRDLDEGCRSR-------------------- 145 (487)
T ss_dssp --EECTTCCEEECCSSC-CCCEEEC-------CCSSCEEEECCSSCCCSGGGBCGGGGSS--------------------
T ss_pred --CCCCCcCEEECcCCc-CCCCCcc-------ccCCCCEEECCCCCCCCCCchhhcCCCC--------------------
Confidence 135899999999873 3332111 2344444444444333333333334444
Q ss_pred HhhcCCccEEEeeccccChHHHHHhh-cCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHH
Q 009671 267 TDRVTSLVEIHLERIQVTDVGLAAIS-NCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVA 345 (529)
Q Consensus 267 ~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~ 345 (529)
|+.|++++|.++......+. .+++|+.|+|++|. ++... ... .+++|+.|+|++|....+... .
T Consensus 146 ------L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~--~~~-~l~~L~~L~Ls~N~l~~~~~~-----~ 210 (487)
T 3oja_A 146 ------VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--GQV-VFAKLKTLDLSSNKLAFMGPE-----F 210 (487)
T ss_dssp ------EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--CCC-CCTTCCEEECCSSCCCEECGG-----G
T ss_pred ------CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc--ccc-cCCCCCEEECCCCCCCCCCHh-----H
Confidence 55555555544443333332 34555555555542 22110 000 245555555555543333221 1
Q ss_pred hcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEe
Q 009671 346 KCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCI 407 (529)
Q Consensus 346 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l 407 (529)
..+++|+.|++++|.++.. ......+++|+.|+++++. ++...+......++.|+.|++
T Consensus 211 ~~l~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCccEEEecCCcCccc--chhhccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEec
Confidence 2345555555555555431 1112344556666665553 332233333333444444443
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=6e-14 Score=133.79 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=62.9
Q ss_pred hcCCCCCeEEecCCCCCChh--hHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHH
Q 009671 292 SNCLDLEIMHLVKTPECTNL--GLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVL 369 (529)
Q Consensus 292 ~~~~~L~~L~L~~~~~~~~~--~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l 369 (529)
..+++|++|++++| .++.. ....+...+++|++|+|++|....+.+..+.. ...+++|++|++++|.++... .
T Consensus 194 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-~~~~~~L~~L~Ls~N~l~~lp-~-- 268 (310)
T 4glp_A 194 HKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR-CMWSSALNSLNLSFAGLEQVP-K-- 268 (310)
T ss_dssp TSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS-CCCCTTCCCEECCSSCCCSCC-S--
T ss_pred hcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh-ccCcCcCCEEECCCCCCCchh-h--
Confidence 34666777777766 33321 11123345677777777776543331111110 011257788888877776321 1
Q ss_pred HhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHH
Q 009671 370 ASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDH 415 (529)
Q Consensus 370 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~ 415 (529)
.-+++|++|++++|. ++.... ...+++|+.|++++|++++.
T Consensus 269 -~~~~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 269 -GLPAKLRVLDLSSNR-LNRAPQ---PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp -CCCSCCSCEECCSCC-CCSCCC---TTSCCCCSCEECSSTTTSCC
T ss_pred -hhcCCCCEEECCCCc-CCCCch---hhhCCCccEEECcCCCCCCC
Confidence 123678888887774 332111 24578888888888887653
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.38 E-value=1.3e-13 Score=131.57 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=123.2
Q ss_pred hcCCCCCeEeccccCCCch-HHHHHHHh-hcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHH--
Q 009671 242 IGAKNLRTLKLFRCSGDWD-KLLQLVTD-RVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVA-- 317 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~-~~l~~l~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~-- 317 (529)
..+++|++|+++++.-... ..+..+.. ..++|++|++++|.++......++.+++|+.|+++++.-....++..-.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 5678899999988652211 12222211 1378999999999888877677788999999999988432222232222
Q ss_pred HhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHH
Q 009671 318 ERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAA 397 (529)
Q Consensus 318 ~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~ 397 (529)
..+++|++|++++|....+ ......+...+++|++|++++|.++..........+++|++|++++|. ++. +...
T Consensus 198 ~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~-- 271 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETP-SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQ--VPKG-- 271 (312)
T ss_dssp TSCTTCCEEECTTSCCCCH-HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSS--CCSS--
T ss_pred ccCCCCCEEECCCCcCcch-HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cCh--hhhh--
Confidence 4578999999988753322 122334455678999999999988764311112456889999998875 331 1110
Q ss_pred cCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCC
Q 009671 398 KCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVT 439 (529)
Q Consensus 398 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 439 (529)
-.++|++|++++|.+++. .. ...+++|+.|++.+++ ++
T Consensus 272 ~~~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~-l~ 309 (312)
T 1wwl_A 272 LPAKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNP-FL 309 (312)
T ss_dssp CCSEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCT-TT
T ss_pred ccCCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCC-CC
Confidence 026899999999987764 22 3367888999998877 54
No 80
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=7.3e-14 Score=134.11 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=111.2
Q ss_pred cCCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHh
Q 009671 110 RFDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLD 189 (529)
Q Consensus 110 ~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~ 189 (529)
..++++.|+++. ..+. ..-..+. .+++|++|+++++ .++ .+...+..+++|++|++++|.+. .+...+.
T Consensus 79 ~~~~l~~L~L~~----n~l~-~lp~~l~-~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~ 147 (328)
T 4fcg_A 79 TQPGRVALELRS----VPLP-QFPDQAF-RLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNPLR--ALPASIA 147 (328)
T ss_dssp TSTTCCEEEEES----SCCS-SCCSCGG-GGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCCCC--CCCGGGG
T ss_pred cccceeEEEccC----CCch-hcChhhh-hCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCccc--cCcHHHh
Confidence 357899999983 3333 1111233 3889999999985 454 22222346899999999999876 2333466
Q ss_pred cCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhh
Q 009671 190 NCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDR 269 (529)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 269 (529)
.+++|++|++.+|...... ...+ ... .+...+..+++|++|+++++. +. .+......
T Consensus 148 ~l~~L~~L~L~~n~~~~~~--p~~~---------~~~---------~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~l~~ 204 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTEL--PEPL---------AST---------DASGEHQGLVNLQSLRLEWTG-IR--SLPASIAN 204 (328)
T ss_dssp GCTTCCEEEEEEETTCCCC--CSCS---------EEE---------C-CCCEEESTTCCEEEEEEEC-CC--CCCGGGGG
T ss_pred cCcCCCEEECCCCCCcccc--ChhH---------hhc---------cchhhhccCCCCCEEECcCCC-cC--cchHhhcC
Confidence 8999999999987544331 1100 000 001123557888888888764 22 11122346
Q ss_pred cCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCc
Q 009671 270 VTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGW 331 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 331 (529)
+++|++|++++|.++.... .+..+++|+.|++++|...... ......+++|+.|+|++|
T Consensus 205 l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp CTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTC
T ss_pred CCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCC
Confidence 7788888888887764322 3667788888888876432211 111223566666666654
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.37 E-value=2e-14 Score=151.50 Aligned_cols=117 Identities=13% Similarity=0.071 Sum_probs=65.8
Q ss_pred hcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCHHHHHHHHhcC
Q 009671 371 SNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTTEGADWLRARR 450 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 450 (529)
..++.|+.|+++++..... ........+++|+.|+|++|.++......+. .+++|++|+|++|. ++.-....+.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-~l~~L~~L~Ls~N~-l~~l~~~~~~--- 539 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNN-FFSLDTFPYK--- 539 (635)
T ss_dssp TTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSC-CCBCCCGGGT---
T ss_pred ccchhhhhhhhhhcccccc-cCchhhhhccccCEEECCCCccCCcChHHHc-CCCCCCEEECCCCc-CCCCChhHHh---
Confidence 3455666666665532111 0111123467888888888876653323333 57788888888876 4421111110
Q ss_pred CcEEEEeccCccccccccCCccccCCc----cCC--CcccccCccccCCCchhHHH
Q 009671 451 EYVVVNLDSGEAEHQDASDGGVQENGI----EFP--PQMVQPSVASSRNTRSTSFK 500 (529)
Q Consensus 451 ~~l~l~l~~~~~~~ld~~~~~~~~~~~----~~p--l~~l~l~~c~~~~~~~~~~~ 500 (529)
....++.+|+++|.+..... .+| ++.+++++++-..++...|.
T Consensus 540 -------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~ 588 (635)
T 4g8a_A 540 -------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 588 (635)
T ss_dssp -------TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHH
T ss_pred -------CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHH
Confidence 11346777788888765432 233 78888888776666554433
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.36 E-value=5.2e-12 Score=120.07 Aligned_cols=187 Identities=20% Similarity=0.193 Sum_probs=89.8
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCccc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAA 220 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 220 (529)
++|++|++.++ .+... .. ...+++|++|++++|.+..... +..+++|++|+++++. +...
T Consensus 41 ~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~------------ 100 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNV------------ 100 (308)
T ss_dssp HTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCC------------
T ss_pred CCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCc------------
Confidence 45666666654 22221 11 2345666666666666432211 4456666666666542 2220
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeE
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 300 (529)
..+..+++|++|++++|.-..-. . ...+++|+.|++++|.+++... +..+++|+.|
T Consensus 101 ------------------~~~~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 156 (308)
T 1h6u_A 101 ------------------SAIAGLQSIKTLDLTSTQITDVT---P-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156 (308)
T ss_dssp ------------------GGGTTCTTCCEEECTTSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred ------------------hhhcCCCCCCEEECCCCCCCCch---h-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEE
Confidence 01233455555555554311110 0 2344555555555555444322 4455666666
Q ss_pred EecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEE
Q 009671 301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLA 380 (529)
Q Consensus 301 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~ 380 (529)
+++++ .+++... ...+++|+.|++++|....+.. ...+++|++|++++|.+.+.. .+ ..+++|+.|+
T Consensus 157 ~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~--~l-~~l~~L~~L~ 223 (308)
T 1h6u_A 157 SIGNA-QVSDLTP---LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS--PL-ANTSNLFIVT 223 (308)
T ss_dssp ECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG--GG-TTCTTCCEEE
T ss_pred EccCC-cCCCChh---hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc--cc-cCCCCCCEEE
Confidence 66655 2222111 2335666666666554333322 234566666666666555433 12 5566666666
Q ss_pred ccCC
Q 009671 381 LCGS 384 (529)
Q Consensus 381 l~~~ 384 (529)
++++
T Consensus 224 l~~N 227 (308)
T 1h6u_A 224 LTNQ 227 (308)
T ss_dssp EEEE
T ss_pred ccCC
Confidence 6655
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.35 E-value=8.1e-12 Score=129.38 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=171.8
Q ss_pred CceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcC
Q 009671 112 DVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNC 191 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~ 191 (529)
++|+.|+++ .+.++. +...+++|+.|+|+++ .++. +...+++|++|++++|.++.- ...+
T Consensus 61 ~~L~~L~L~----~N~l~~-----lp~~l~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N~l~~l-----~~~l 120 (622)
T 3g06_A 61 AHITTLVIP----DNNLTS-----LPALPPELRTLEVSGN-QLTS-----LPVLPPGLLELSIFSNPLTHL-----PALP 120 (622)
T ss_dssp TTCSEEEEC----SCCCSC-----CCCCCTTCCEEEECSC-CCSC-----CCCCCTTCCEEEECSCCCCCC-----CCCC
T ss_pred CCCcEEEec----CCCCCC-----CCCcCCCCCEEEcCCC-cCCc-----CCCCCCCCCEEECcCCcCCCC-----CCCC
Confidence 689999998 333331 1225789999999986 4542 122578999999999986531 1157
Q ss_pred CCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcC
Q 009671 192 STLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVT 271 (529)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 271 (529)
++|+.|++.++. ++. +. ...++|+.|++.++.... ++ ..+++|+.|++.++.- .. +...++
T Consensus 121 ~~L~~L~L~~N~-l~~--lp------~~l~~L~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l-~~-----l~~~~~ 181 (622)
T 3g06_A 121 SGLCKLWIFGNQ-LTS--LP------VLPPGLQELSVSDNQLAS-LP---ALPSELCKLWAYNNQL-TS-----LPMLPS 181 (622)
T ss_dssp TTCCEEECCSSC-CSC--CC------CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC-SC-----CCCCCT
T ss_pred CCcCEEECCCCC-CCc--CC------CCCCCCCEEECcCCcCCC-cC---CccCCCCEEECCCCCC-CC-----CcccCC
Confidence 899999998873 332 11 134789999988775443 22 2457899999988642 21 114568
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccc
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNL 351 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L 351 (529)
+|+.|++++|.++... ...++|+.|+++++. ++.. ...+++|+.|++++|....+. ..+++|
T Consensus 182 ~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~-l~~l-----~~~~~~L~~L~Ls~N~L~~lp--------~~l~~L 243 (622)
T 3g06_A 182 GLQELSVSDNQLASLP----TLPSELYKLWAYNNR-LTSL-----PALPSGLKELIVSGNRLTSLP--------VLPSEL 243 (622)
T ss_dssp TCCEEECCSSCCSCCC----CCCTTCCEEECCSSC-CSSC-----CCCCTTCCEEECCSSCCSCCC--------CCCTTC
T ss_pred CCcEEECCCCCCCCCC----CccchhhEEECcCCc-cccc-----CCCCCCCCEEEccCCccCcCC--------CCCCcC
Confidence 8999999999877522 135799999999873 3321 123578999999988655543 356899
Q ss_pred cceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHH
Q 009671 352 QELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALA 421 (529)
Q Consensus 352 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~ 421 (529)
+.|++++|.++... ..+++|+.|++++|. ++. +......+++|+.|+|++|+++......+.
T Consensus 244 ~~L~Ls~N~L~~lp-----~~~~~L~~L~Ls~N~-L~~--lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 244 KELMVSGNRLTSLP-----MLPSGLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CEEECCSSCCSCCC-----CCCTTCCEEECCSSC-CCS--CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cEEECCCCCCCcCC-----cccccCcEEeCCCCC-CCc--CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 99999999887532 267899999999984 442 222245689999999999999887666554
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.33 E-value=2e-13 Score=130.24 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=67.7
Q ss_pred cCCccEEEeeccccChH--HHHHh--hcCCCCCeEEecCCCCCChh-h-HHHHHHhCCCCcEEEecCcccCccChHHHHH
Q 009671 270 VTSLVEIHLERIQVTDV--GLAAI--SNCLDLEIMHLVKTPECTNL-G-LAAVAERCKLLRKLHIDGWKANRIGDEGLIA 343 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~--~~~~l--~~~~~L~~L~L~~~~~~~~~-~-l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~ 343 (529)
+++|++|++++|.+... ....+ ..+++|++|+++++ .++.. . ...+...+++|+.|++++|......+. .
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~ 247 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---P 247 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC---S
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch---h
Confidence 34455555555544332 11222 45566666666665 23321 1 122334456677777766543322100 0
Q ss_pred HHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCH
Q 009671 344 VAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSD 414 (529)
Q Consensus 344 ~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~ 414 (529)
....+++|++|++++|.++... ..+ .++|++|+++++. +++. .. ...+++|++|++++|++++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~ip-~~~---~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQVP-KGL---PAKLSVLDLSYNR-LDRN--PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSCC-SSC---CSEEEEEECCSSC-CCSC--CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccChhh-hhc---cCCceEEECCCCC-CCCC--hh-HhhCCCCCEEeccCCCCCC
Confidence 1123467777777777665211 111 1567777777764 3332 11 2357788888888887764
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=5.4e-12 Score=111.56 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=106.0
Q ss_pred hcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcC
Q 009671 269 RVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCC 348 (529)
Q Consensus 269 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~ 348 (529)
.+++|+.|+++++.+++.. .+..+++|++|++++| .++... . ...+++|++|++++|... ...... ...+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~-l~~l~~L~~L~l~~n~l~---~~~~~~-l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNI-HATNYN--P-ISGLSNLERLRIMGKDVT---SDKIPN-LSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESC-CCSCCG--G-GTTCTTCCEEEEECTTCB---GGGSCC-CTTC
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCC-CCCcch--h-hhcCCCCCEEEeECCccC---cccChh-hcCC
Confidence 3456888888887776533 4667888888888887 433332 2 234788899998876432 211111 2357
Q ss_pred ccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCcc
Q 009671 349 PNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLV 428 (529)
Q Consensus 349 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~ 428 (529)
++|+.|++++|.+++.....+ ..+++|++|++++|..+++.. ....+++|+.|++++|.+++.. .+. .+++|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~--~l~-~l~~L~ 184 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR--GIE-DFPKLN 184 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT--TGG-GCSSCC
T ss_pred CCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH--Hhc-cCCCCC
Confidence 889999999999888766666 688999999998886455543 2346889999999999887632 333 688999
Q ss_pred EEEeccCCCCC
Q 009671 429 KVKVKKCRAVT 439 (529)
Q Consensus 429 ~L~l~~c~~i~ 439 (529)
.|++.++. +.
T Consensus 185 ~L~l~~N~-i~ 194 (197)
T 4ezg_A 185 QLYAFSQT-IG 194 (197)
T ss_dssp EEEECBC----
T ss_pred EEEeeCcc-cC
Confidence 99998877 54
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.25 E-value=7.8e-13 Score=139.33 Aligned_cols=132 Identities=15% Similarity=0.074 Sum_probs=87.8
Q ss_pred CceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcC
Q 009671 112 DVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNC 191 (529)
Q Consensus 112 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~ 191 (529)
+++++|+++. +.++.-.-..+ ..+++|+.|+|+++ .++...- ..+..+++|++|+|++|.+..-. ...+..+
T Consensus 52 ~~~~~LdLs~----N~i~~l~~~~f-~~l~~L~~L~Ls~N-~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSF----NPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNPIQSLA-LGAFSGL 123 (635)
T ss_dssp TTCCEEECTT----SCCCEECTTTT-TTCTTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCCCCEEC-GGGGTTC
T ss_pred cCCCEEEeeC----CCCCCCCHHHH-hCCCCCCEEECCCC-cCCCcCh-hHhcCCCCCCEEEccCCcCCCCC-HHHhcCC
Confidence 3699999983 33332111112 35889999999986 5543221 12346899999999999864321 1235679
Q ss_pred CCCCEEecCCccCCCccccccccCCCcccCccchhhccccccC-CcchhhhhcCCCCCeEeccccC
Q 009671 192 STLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNG-QCFGPLIIGAKNLRTLKLFRCS 256 (529)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 256 (529)
++|++|++.++. ++.... ..+ ..+++|+.|++.++... ...+..+..+++|++|+++++.
T Consensus 124 ~~L~~L~Ls~N~-l~~l~~-~~~---~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 124 SSLQKLVAVETN-LASLEN-FPI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCCEEECTTSC-CCCSTT-CCC---TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-CCCCCh-hhh---hcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999999999873 332111 011 26789999999887653 3456677889999999999864
No 87
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.22 E-value=3e-11 Score=102.18 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=59.7
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcccc
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQ 352 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~ 352 (529)
|++|+++++.+++.++..+..|++|++|+|++|..+++.++..+... + ..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~------------------------~~~~~L~ 117 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-E------------------------NLQKSML 117 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-H------------------------HHHHHCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-c------------------------cccCCCC
Confidence 56666666556666665555566666666666555555555555431 0 0134555
Q ss_pred ceEeecc-cCcHHHHHHHHhcCCCCCEEEccCCCCCChhH--HHHHHHcCCcCC
Q 009671 353 ELVLIGV-NPTRVSLEVLASNCQNLERLALCGSDTVGDVE--ISCIAAKCVALK 403 (529)
Q Consensus 353 ~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~--l~~l~~~~~~L~ 403 (529)
+|+|++| .+++.++..+ ..|++|++|++++|..++|.+ ...+-..+|+++
T Consensus 118 ~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 118 EMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp EEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred EEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 5555555 3666666655 456777777777777777765 333444566654
No 88
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.21 E-value=1.5e-10 Score=111.61 Aligned_cols=149 Identities=17% Similarity=0.111 Sum_probs=94.4
Q ss_pred hcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHh-cCccccceEeecc--c-CcHH---
Q 009671 292 SNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAK-CCPNLQELVLIGV--N-PTRV--- 364 (529)
Q Consensus 292 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~-~~~~L~~L~L~~~--~-i~~~--- 364 (529)
..+|+|+.|.|.++..+.-. .+ ..++|++|+|..+ .+++.++..+.. .+|+|++|+|+.+ . ..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~---~~--~~~~L~~L~L~~~---~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIG---KK--PRPNLKSLEIISG---GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCC---SC--BCTTCSEEEEECS---BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred hcCCCCcEEEEeCCCCceec---cc--cCCCCcEEEEecC---CCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 44566666666554211111 11 1467777777543 456666655553 4677777776521 1 1111
Q ss_pred HHHHHH--hcCCCCCEEEccCCCCCChhHHHHHHH--cCCcCCEEEeccCCCCHHHHHHHHhc---CCCccEEEeccCCC
Q 009671 365 SLEVLA--SNCQNLERLALCGSDTVGDVEISCIAA--KCVALKKLCIKSCPVSDHGMEALAGG---CPNLVKVKVKKCRA 437 (529)
Q Consensus 365 ~l~~l~--~~~~~L~~L~l~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~i~~~~l~~l~~~---~~~L~~L~l~~c~~ 437 (529)
.+..+. ..+|+|++|.+.+|. +++.+...++. .+++|++|+|+.|.+++.+...+... +++|+.|++.+|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~- 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY- 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-
T ss_pred HHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-
Confidence 111111 247888888888775 56655555554 36789999999888999888777643 6889999999887
Q ss_pred CCHHHHHHHHhcC
Q 009671 438 VTTEGADWLRARR 450 (529)
Q Consensus 438 i~~~~~~~l~~~~ 450 (529)
+++++++.++...
T Consensus 319 i~d~~~~~l~~al 331 (362)
T 2ra8_A 319 LSDEMKKELQKSL 331 (362)
T ss_dssp CCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHc
Confidence 9999999988854
No 89
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.20 E-value=6.6e-11 Score=114.07 Aligned_cols=187 Identities=15% Similarity=0.087 Sum_probs=126.4
Q ss_pred hcCCCCCeEeccccCC-------CchHHHHHHHhhcCCccEEEeeccc-cChHHHHHhhcCCCCCeEEecCCCCCChhhH
Q 009671 242 IGAKNLRTLKLFRCSG-------DWDKLLQLVTDRVTSLVEIHLERIQ-VTDVGLAAISNCLDLEIMHLVKTPECTNLGL 313 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~-------~~~~~l~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l 313 (529)
..+++|+.|.+..... .....+..+...+|+|++|.+.++. +. +..+ .+++|++|+|..| .++...+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~-~l~~~~l 210 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISG-GLPDSVV 210 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECS-BCCHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecC-CCChHHH
Confidence 4456777776643211 0011244566777888888888762 21 1112 3788999999876 5677777
Q ss_pred HHHHH-hCCCCcEEEecCcccCccCh---HHHHHHH--hcCccccceEeecccCcHHHHHHHHh--cCCCCCEEEccCCC
Q 009671 314 AAVAE-RCKLLRKLHIDGWKANRIGD---EGLIAVA--KCCPNLQELVLIGVNPTRVSLEVLAS--NCQNLERLALCGSD 385 (529)
Q Consensus 314 ~~l~~-~~~~L~~L~L~~~~~~~i~~---~~l~~~~--~~~~~L~~L~L~~~~i~~~~l~~l~~--~~~~L~~L~l~~~~ 385 (529)
..+.. .+|+|++|+|+.+......+ ..+..+. ..+|+|+.|++.+|.+.+.....++. .+++|++|+|+.+
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n- 289 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG- 289 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-
Confidence 77764 57999999885311000111 1111222 24799999999999998877666654 5789999999876
Q ss_pred CCChhHHHHHH---HcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 386 TVGDVEISCIA---AKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 386 ~~~~~~l~~l~---~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
.+++.+...+. ..+++|+.|+|++|.++++++..+.+.+ ...++++...
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 58998877766 3478999999999999999999998655 4557777654
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.19 E-value=6.3e-12 Score=117.17 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=37.7
Q ss_pred CccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCc
Q 009671 348 CPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNL 427 (529)
Q Consensus 348 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 427 (529)
+++|++|++++|.++......+ ..+++|++|+++++. ++..... ....+++|+.|++++|.++......+ ..+++|
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L 207 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQ-LKRVPEG-AFDKLTELKTLKLDNNQLKRVPEGAF-DSLEKL 207 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTC
T ss_pred CcCCCEEECCCCcCCccCHhHc-cCCcccceeEecCCc-CcEeChh-HhccCCCcCEEECCCCcCCcCCHHHh-ccccCC
Confidence 3444444444444433221111 344555555555442 2211100 01235566666666665443221112 245666
Q ss_pred cEEEeccCC
Q 009671 428 VKVKVKKCR 436 (529)
Q Consensus 428 ~~L~l~~c~ 436 (529)
+.|++.+++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 666666655
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=4.5e-12 Score=118.60 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=21.6
Q ss_pred CCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCc
Q 009671 167 KGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 167 ~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
++|++|+++++.++..... .+..+++|++|++.++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n 62 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRC 62 (276)
T ss_dssp TTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTC
T ss_pred CCccEEECCCCcccccCHh-HhccccCCcEEECCCC
Confidence 3588888887775432211 2345677777777765
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.18 E-value=6.2e-12 Score=117.68 Aligned_cols=209 Identities=17% Similarity=0.120 Sum_probs=103.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCccc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAA 220 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 220 (529)
++|++|+++++ .++...... +..+++|++|++++|.+..... ..+..+++|++|++.++. +....
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~----------- 92 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYS-FFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNP-IQSLA----------- 92 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTT-TTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCC-CCEEC-----------
T ss_pred CCccEEECCCC-cccccCHhH-hccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCc-cCccC-----------
Confidence 57999999885 555433222 3358899999999998643211 123467888888888752 22211
Q ss_pred CccchhhccccccCCcchhhhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeE
Q 009671 221 SSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIM 300 (529)
Q Consensus 221 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 300 (529)
+..+..+++|++|++.++. ++......+..+++|++|
T Consensus 93 -----------------~~~~~~l~~L~~L~l~~n~--------------------------l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 93 -----------------LGAFSGLSSLQKLVAVETN--------------------------LASLENFPIGHLKTLKEL 129 (276)
T ss_dssp -----------------TTTTTTCTTCCEEECTTSC--------------------------CCCSTTCCCTTCTTCCEE
T ss_pred -----------------hhhhcCCccccEEECCCCC--------------------------ccccCchhcccCCCCCEE
Confidence 1123455666666666543 111111112334444444
Q ss_pred EecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcccc-ceEeecccCcHHHHHHHHhcCCCCCEE
Q 009671 301 HLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQ-ELVLIGVNPTRVSLEVLASNCQNLERL 379 (529)
Q Consensus 301 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~-~L~L~~~~i~~~~l~~l~~~~~~L~~L 379 (529)
+++++ .+....+......+++|++|++++|....+....+..+. .++.|. .|++++|.+.......+ ...+|++|
T Consensus 130 ~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L 205 (276)
T 2z62_A 130 NVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKEL 205 (276)
T ss_dssp ECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSS--CSCCEEEE
T ss_pred ECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-hccccceeeecCCCcccccCcccc--CCCcccEE
Confidence 44443 122111111222345555555555443333332222221 122222 55666665543221111 22357777
Q ss_pred EccCCCCCChhHHHHHHHcCCcCCEEEeccCCCC
Q 009671 380 ALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVS 413 (529)
Q Consensus 380 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~ 413 (529)
+++++. ++.... .+...+++|+.|++++|+++
T Consensus 206 ~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 206 ALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECCSSC-CSCCCT-TTTTTCCSCCEEECCSSCBC
T ss_pred ECCCCc-eeecCH-hHhcccccccEEEccCCccc
Confidence 776664 332111 11234678888888888764
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=5.4e-11 Score=111.96 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=117.7
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCK 321 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 321 (529)
..+++|+.|++++|.-..-. . ...+++|+.|++++|.+++... +..+++|+.|+++++. ++.. .. ...++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~---~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~ 112 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ---G-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDL--SS-LKDLK 112 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT---T-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCG--GG-GTTCT
T ss_pred hhcCcccEEEccCCCcccCh---h-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCC--hh-hccCC
Confidence 44677888888776422111 1 3456788888888887776543 6778888888888873 3332 12 34578
Q ss_pred CCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCc
Q 009671 322 LLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVA 401 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~ 401 (529)
+|+.|++++|....+. ....+++|+.|++++|.+++. .. ...+++|++|++++|. +++... ...+++
T Consensus 113 ~L~~L~L~~n~i~~~~------~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~ 179 (291)
T 1h6t_A 113 KLKSLSLEHNGISDIN------GLVHLPQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQ-ISDIVP---LAGLTK 179 (291)
T ss_dssp TCCEEECTTSCCCCCG------GGGGCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSC-CCCCGG---GTTCTT
T ss_pred CCCEEECCCCcCCCCh------hhcCCCCCCEEEccCCcCCcc--hh-hccCCCCCEEEccCCc-cccchh---hcCCCc
Confidence 8889988887544431 234678899999988887764 22 3678889999998885 443321 345888
Q ss_pred CCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCCCH
Q 009671 402 LKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAVTT 440 (529)
Q Consensus 402 L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~ 440 (529)
|+.|++++|.+++. ..+ ..+++|+.|++.++. +++
T Consensus 180 L~~L~L~~N~i~~l--~~l-~~l~~L~~L~l~~n~-i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL--RAL-AGLKNLDVLELFSQE-CLN 214 (291)
T ss_dssp CCEEECCSSCCCBC--GGG-TTCTTCSEEEEEEEE-EEC
T ss_pred cCEEECCCCcCCCC--hhh-ccCCCCCEEECcCCc-ccC
Confidence 99999999987763 233 368899999998887 443
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.17 E-value=3.2e-12 Score=119.27 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=38.9
Q ss_pred cCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCC
Q 009671 347 CCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPN 426 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 426 (529)
.+++|+.|++++|.++......+ ..+++|++|++++|. ++...- .....+++|+.|++++|++.. .|++
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~~~--------~~~~ 223 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVF-DKLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNPWDC--------TCPG 223 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCBCC--------CTTT
T ss_pred cCccCCEEECCCCCcCccCHHHh-cCCccCCEEECCCCc-CCccCH-HHHhCCcCCCEEEccCCCccc--------cCcH
Confidence 34555555555555543222112 455666666666553 222111 112346677777777776541 3556
Q ss_pred ccEEEeccC
Q 009671 427 LVKVKVKKC 435 (529)
Q Consensus 427 L~~L~l~~c 435 (529)
|+.+++..+
T Consensus 224 l~~l~~~~n 232 (272)
T 3rfs_A 224 IRYLSEWIN 232 (272)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555443
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.16 E-value=2.6e-11 Score=112.90 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=64.8
Q ss_pred CCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcc
Q 009671 271 TSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPN 350 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~ 350 (529)
++|++|++++|.++......+..+++|++|+++++. ++..... ....+++|+.|++++|....+.... ...+++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~ 158 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGV----FDKLTS 158 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTT
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHH-HhCcCcCCCEEECCCCcCCccCHhH----ccCCcc
Confidence 334444444443333333333445555555555441 1111110 1123456666666655433333211 234566
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCC
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPV 412 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i 412 (529)
|++|++++|.++......+ ..+++|++|+++++. ++..... ....+++|+.|++++|++
T Consensus 159 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQ-LKRVPEG-AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred cceeEecCCcCcEeChhHh-ccCCCcCEEECCCCc-CCcCCHH-HhccccCCCEEEecCCCe
Confidence 7777776666554332222 456777777777663 3321111 123467888888888874
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.15 E-value=7.2e-11 Score=104.23 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=70.7
Q ss_pred CCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCC
Q 009671 166 CKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAK 245 (529)
Q Consensus 166 ~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 245 (529)
+++|++|+++++.+..- . -+..+++|++|++.++ .+... ..+..++
T Consensus 43 l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n-~~~~~------------------------------~~l~~l~ 88 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL--T-GIEYAHNIKDLTINNI-HATNY------------------------------NPISGLS 88 (197)
T ss_dssp HHTCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESC-CCSCC------------------------------GGGTTCT
T ss_pred cCCccEEeccCCCccCh--H-HHhcCCCCCEEEccCC-CCCcc------------------------------hhhhcCC
Confidence 45666677666665421 1 1345666666666655 22220 0123345
Q ss_pred CCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcE
Q 009671 246 NLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRK 325 (529)
Q Consensus 246 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 325 (529)
+|++|+++++. +....... ...+++|+.|++++|.+++.....+..+++|+.|++++|..+++.. ....+++|+.
T Consensus 89 ~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~ 163 (197)
T 4ezg_A 89 NLERLRIMGKD-VTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKS 163 (197)
T ss_dssp TCCEEEEECTT-CBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCE
T ss_pred CCCEEEeECCc-cCcccChh-hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCE
Confidence 55555555532 11111111 1234455555555555555445555556666666666553233321 1233555666
Q ss_pred EEecCcccCccChHHHHHHHhcCccccceEeecccCc
Q 009671 326 LHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPT 362 (529)
Q Consensus 326 L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~ 362 (529)
|++++|....+. ....+++|+.|++++|.+.
T Consensus 164 L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 164 LNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECTTBCCCCCT------TGGGCSSCCEEEECBC---
T ss_pred EECCCCCCcChH------HhccCCCCCEEEeeCcccC
Confidence 666554332221 1234555555555555543
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.12 E-value=5.1e-11 Score=111.10 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=28.7
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSD 385 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 385 (529)
+++|+.|++++|....+... ....+++|+.|++++|.++......+ ..+++|+.|+++++.
T Consensus 156 l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPEG----VFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred CccCCEEECCCCCcCccCHH----HhcCCccCCEEECCCCcCCccCHHHH-hCCcCCCEEEccCCC
Confidence 44555555555433322221 11234556666666555543222112 455666666666554
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.10 E-value=2.7e-11 Score=113.94 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|+.|++++|....+.... ...+++|++|++++|.++......+ ..+++|+.|+++++. ++.... .+...+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~-~~~~~l 171 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLL-TPTPKLEKLSLANNN-LTELPA-GLLNGL 171 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSC-CSCCCT-TTTTTC
T ss_pred CCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhc-ccccCCCEEECCCCc-CCccCH-HHhcCc
Confidence 455555555554433332211 1234566666666665543322212 455666666666653 221110 112345
Q ss_pred CcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCCCC
Q 009671 400 VALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCRAV 438 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i 438 (529)
++|+.|++++|.++... ..+. ..+.|+.|++.+++..
T Consensus 172 ~~L~~L~L~~N~l~~ip-~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 172 ENLDTLLLQENSLYTIP-KGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCCEEECCSSCCCCCC-TTTT-TTCCCSEEECCSCCBC
T ss_pred CCCCEEECCCCcCCccC-hhhc-ccccCCeEEeCCCCcc
Confidence 67777777777655211 1122 3456777777776643
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.10 E-value=3.3e-12 Score=116.77 Aligned_cols=181 Identities=11% Similarity=0.016 Sum_probs=104.3
Q ss_pred hhhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeec-cccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHH
Q 009671 240 LIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLER-IQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAE 318 (529)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~ 318 (529)
.+..+++|++|+++++..+.... ......+++|++|++++ +.++......+..+++|+.|+++++. ++. +.. ..
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~--lp~-~~ 124 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKM--FPD-LT 124 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCS--CCC-CT
T ss_pred HccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccc--ccc-cc
Confidence 34556777777777653122100 01123456777777776 66665554555667778888877662 222 111 23
Q ss_pred hCCCCc---EEEecCc-ccCccChHHHHHHHhcCcccc-ceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 009671 319 RCKLLR---KLHIDGW-KANRIGDEGLIAVAKCCPNLQ-ELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEIS 393 (529)
Q Consensus 319 ~~~~L~---~L~L~~~-~~~~i~~~~l~~~~~~~~~L~-~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~ 393 (529)
.+++|+ .|++++| ....+.... ...+++|+ .|++++|.++......+ .. ++|++|+++++..++...-.
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~----~~~l~~L~~~L~l~~n~l~~i~~~~~-~~-~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNA----FQGLCNETLTLKLYNNGFTSVQGYAF-NG-TKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTT----TTTTBSSEEEEECCSCCCCEECTTTT-TT-CEEEEEECTTCTTCCEECTT
T ss_pred cccccccccEEECCCCcchhhcCccc----ccchhcceeEEEcCCCCCcccCHhhc-CC-CCCCEEEcCCCCCcccCCHH
Confidence 356666 8888776 444443322 23567888 88888887664332222 23 67888888877434432111
Q ss_pred HHHHcC-CcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 394 CIAAKC-VALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 394 ~l~~~~-~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
. ...+ ++|+.|++++|.++.... ..+++|+.|++.++.
T Consensus 199 ~-~~~l~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 199 A-FGGVYSGPSLLDVSQTSVTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp T-TTTCSBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC-
T ss_pred H-hhccccCCcEEECCCCccccCCh----hHhccCceeeccCcc
Confidence 1 2345 788888888887653211 146788888888775
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=9.7e-11 Score=121.15 Aligned_cols=145 Identities=23% Similarity=0.282 Sum_probs=63.1
Q ss_pred cCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCc
Q 009671 270 VTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCP 349 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~ 349 (529)
+++|+.|+|++|.+++... +..+++|+.|+|++| .+.... . ...+++|+.|+|++|....+. ....++
T Consensus 64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~--~-l~~l~~L~~L~Ls~N~l~~l~------~l~~l~ 131 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS--S-LKDLKKLKSLSLEHNGISDIN------GLVHLP 131 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT--T-STTCTTCCEEECTTSCCCCCG------GGGGCT
T ss_pred CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh--h-hccCCCCCEEEecCCCCCCCc------cccCCC
Confidence 4444444444444443222 444455555555544 122111 1 122445555555544332221 122345
Q ss_pred cccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccE
Q 009671 350 NLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVK 429 (529)
Q Consensus 350 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~ 429 (529)
+|+.|+|++|.+... .. +..+++|+.|+|++|. +++... ...+++|+.|+|++|.+++. ..+. .+++|+.
T Consensus 132 ~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~-~l~~L~~ 201 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNHISDL--RALA-GLKNLDV 201 (605)
T ss_dssp TCSEEECCSSCCCCC--GG-GGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCBC--GGGT-TCTTCSE
T ss_pred ccCEEECCCCccCCc--hh-hcccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCCCCCCC--hHHc-cCCCCCE
Confidence 555555555554442 11 2455555555555553 222111 22355555555555554442 2222 3555555
Q ss_pred EEeccCC
Q 009671 430 VKVKKCR 436 (529)
Q Consensus 430 L~l~~c~ 436 (529)
|+|.+|.
T Consensus 202 L~L~~N~ 208 (605)
T 1m9s_A 202 LELFSQE 208 (605)
T ss_dssp EECCSEE
T ss_pred EEccCCc
Confidence 5555554
No 101
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.09 E-value=1.3e-09 Score=94.87 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=72.1
Q ss_pred HHHhCCCCcEEEecCcccCccChHHHHHHHh---cCccccceEeecccCcHHHHHHHH---hcCCCCCEEEccCCCCCCh
Q 009671 316 VAERCKLLRKLHIDGWKANRIGDEGLIAVAK---CCPNLQELVLIGVNPTRVSLEVLA---SNCQNLERLALCGSDTVGD 389 (529)
Q Consensus 316 l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~---~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~ 389 (529)
+...+++|++|+|++| ..+++.++..++. ..++|++|+|++|.+.+.+...++ ...+.|++|+|++|. +++
T Consensus 31 ~l~~~~~L~~L~L~~n--~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNI--MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTC--TTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHhcCCCCCEEEecCC--CCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 3344556666666543 1355555444432 245666666666666666544432 234567777776663 666
Q ss_pred hHHHHHHHc---CCcCCEEEe--ccCCCCHHHHHHHHh---cCCCccEEEeccCCCCCHHH
Q 009671 390 VEISCIAAK---CVALKKLCI--KSCPVSDHGMEALAG---GCPNLVKVKVKKCRAVTTEG 442 (529)
Q Consensus 390 ~~l~~l~~~---~~~L~~L~l--~~~~i~~~~l~~l~~---~~~~L~~L~l~~c~~i~~~~ 442 (529)
.++..++.. .++|++|+| ++|.+++++...+.+ ..+.|++|++.+|. +++.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 666655543 456777777 667777777555543 24677777777776 66654
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.07 E-value=3.8e-10 Score=106.11 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=62.2
Q ss_pred hhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHH
Q 009671 291 ISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLA 370 (529)
Q Consensus 291 l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~ 370 (529)
+..+++|+.|+++++ .++.. .. ...+++|+.|++++|....+ .....+++|+.|++++|.+++... .
T Consensus 108 l~~l~~L~~L~L~~n-~i~~~--~~-l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~---l 174 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP---L 174 (291)
T ss_dssp GTTCTTCCEEECTTS-CCCCC--GG-GGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG---G
T ss_pred hccCCCCCEEECCCC-cCCCC--hh-hcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh---h
Confidence 445566666666655 22221 11 22356666666666543333 123356777777777776665432 3
Q ss_pred hcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCH
Q 009671 371 SNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSD 414 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~ 414 (529)
..+++|+.|++++|. +++.. . ...+++|+.|++++|++++
T Consensus 175 ~~l~~L~~L~L~~N~-i~~l~--~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNH-ISDLR--A-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSC-CCBCG--G-GTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCc-CCCCh--h-hccCCCCCEEECcCCcccC
Confidence 667778888887774 44321 2 2457888888888887654
No 103
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.06 E-value=8.5e-11 Score=78.61 Aligned_cols=46 Identities=33% Similarity=0.485 Sum_probs=36.1
Q ss_pred CCCcccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhhc--ccceee
Q 009671 47 AYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEG--QSRHRL 92 (529)
Q Consensus 47 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~~--~~~~~~ 92 (529)
....|..||+||+.+||+||+.+|+.++++|||+|+.+.. .+|+.+
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4567899999999999999999999999999999999854 457654
No 104
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.05 E-value=1e-09 Score=95.43 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=104.4
Q ss_pred hHHHHHHHhcCccccceEeecc-cCcHHHHHHHHh---cCCCCCEEEccCCCCCChhHHHHHHH---cCCcCCEEEeccC
Q 009671 338 DEGLIAVAKCCPNLQELVLIGV-NPTRVSLEVLAS---NCQNLERLALCGSDTVGDVEISCIAA---KCVALKKLCIKSC 410 (529)
Q Consensus 338 ~~~l~~~~~~~~~L~~L~L~~~-~i~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~ 410 (529)
.+.+..+...+++|++|+|++| .+.+.+...+.. .++.|++|+|++|. +++++...++. ..++|++|+|++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3456667777899999999999 999988776644 56889999999995 89988776654 3578999999999
Q ss_pred CCCHHHHHHHHhc---CCCccEEEe--ccCCCCCHHHHHHHHhcCCcEEEEeccCccccccccCCccccCC
Q 009671 411 PVSDHGMEALAGG---CPNLVKVKV--KKCRAVTTEGADWLRARREYVVVNLDSGEAEHQDASDGGVQENG 476 (529)
Q Consensus 411 ~i~~~~l~~l~~~---~~~L~~L~l--~~c~~i~~~~~~~l~~~~~~l~l~l~~~~~~~ld~~~~~~~~~~ 476 (529)
.|++.+...+++. .+.|++|+| .+|. ++++++..+++.. -....+..+++++|.+...|
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L------~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANML------EKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHH------HHCSSCCEEECCCSSHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHH------HhCCCcCEEeccCCCCChHH
Confidence 9999998888754 568999999 7677 9999999888752 12345777778888776544
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.03 E-value=4.2e-11 Score=109.37 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=38.0
Q ss_pred CCCCc-EEEecCcccCccChHHHHHHHhcCccccceEeeccc-CcHHHHHHHHhcC-CCCCEEEccCCCCCChhHHHHHH
Q 009671 320 CKLLR-KLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVN-PTRVSLEVLASNC-QNLERLALCGSDTVGDVEISCIA 396 (529)
Q Consensus 320 ~~~L~-~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~l~~l~ 396 (529)
+++|+ .|+++++....+....+ . .++|+.|++++|. ++......+ ..+ ++|+.|+++++. ++....
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~----~-~~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N~-l~~l~~---- 222 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAF----N-GTKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQTS-VTALPS---- 222 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTT----T-TCEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTCC-CCCCCC----
T ss_pred hhcceeEEEcCCCCCcccCHhhc----C-CCCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCCc-cccCCh----
Confidence 45555 56655544333332111 1 1456666666663 543222222 445 666666666653 221110
Q ss_pred HcCCcCCEEEeccC
Q 009671 397 AKCVALKKLCIKSC 410 (529)
Q Consensus 397 ~~~~~L~~L~l~~~ 410 (529)
..+++|+.|+++++
T Consensus 223 ~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 KGLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCSEEECTTC
T ss_pred hHhccCceeeccCc
Confidence 13566777766655
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=7e-10 Score=114.72 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred cCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcC
Q 009671 165 NCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGA 244 (529)
Q Consensus 165 ~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 244 (529)
.+++|+.|+++++.+..-. -+..+++|+.|+|+++. +..... ...+++|+.|.+..+.... + +.+..+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~-l~~~~~------l~~l~~L~~L~Ls~N~l~~-l-~~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNK-LTDIKP------LTNLKNLGWLFLDENKIKD-L-SSLKDL 108 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSC-CCCCGG------GGGCTTCCEEECCSSCCCC-C-TTSTTC
T ss_pred cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCC-CCCChh------hccCCCCCEEECcCCCCCC-C-hhhccC
Confidence 4678888899888864321 14578889999888763 322110 1144555555554443222 1 123445
Q ss_pred CCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 245 KNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
++|+.|++++|..... . -...+++|+.|+|++|.+++. ..+..+++|+.|+|++|
T Consensus 109 ~~L~~L~Ls~N~l~~l---~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI---N-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp TTCCEEECTTSCCCCC---G-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred CCCCEEEecCCCCCCC---c-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 5555555554431110 0 122344455555555544443 23444555555555544
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.98 E-value=5.3e-11 Score=109.56 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=78.3
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcccc
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQ 352 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~ 352 (529)
++.|+++++.++......+..+++|++|+++++ .++...- .....+++|+.|+++++....+.... ...+++|+
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~ 110 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANNQLASLPLGV----FDHLTQLD 110 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCC
T ss_pred CCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCCcccccChhH----hcccCCCC
Confidence 444444444444433334445555666665554 2222111 11123456666666655433332211 23456666
Q ss_pred ceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEe
Q 009671 353 ELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKV 432 (529)
Q Consensus 353 ~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l 432 (529)
+|++++|.++......+ ..+++|++|+++++. ++..... ....+++|+.|+|++|.++......+ ..+++|+.|++
T Consensus 111 ~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l 186 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVF-DRLTKLKELRLNTNQ-LQSIPAG-AFDKLTNLQTLSLSTNQLQSVPHGAF-DRLGKLQTITL 186 (251)
T ss_dssp EEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred EEEcCCCcCCCcChhHh-ccCCcccEEECcCCc-CCccCHH-HcCcCcCCCEEECCCCcCCccCHHHH-hCCCCCCEEEe
Confidence 77776666553322222 456677777776663 3321111 12246778888888777654322223 35677888888
Q ss_pred ccCC
Q 009671 433 KKCR 436 (529)
Q Consensus 433 ~~c~ 436 (529)
.+++
T Consensus 187 ~~N~ 190 (251)
T 3m19_A 187 FGNQ 190 (251)
T ss_dssp CSCC
T ss_pred eCCc
Confidence 8776
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.98 E-value=2.1e-10 Score=107.85 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=28.6
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCc
Q 009671 140 CRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 140 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
+++++++++.+. .++... ....++++.|++++|.++.... ..+..+++|+.|++.++
T Consensus 9 l~~l~~l~~~~~-~l~~ip----~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n 65 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALP----PDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRA 65 (290)
T ss_dssp STTCCEEECTTS-CCSSCC----SCCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTS
T ss_pred cCCccEEECCCC-CCCcCC----CCCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCC
Confidence 456677776653 332210 0112457777777766532211 12335666666666654
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.95 E-value=5.5e-10 Score=103.31 Aligned_cols=143 Identities=12% Similarity=0.190 Sum_probs=78.7
Q ss_pred CCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcc
Q 009671 271 TSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPN 350 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~ 350 (529)
++|+.|+++++.+++.. .+..+++|+.|+++++ .++...- ...+++|+.|++++|....+.. +. . ++
T Consensus 41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~-----~~-~-~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNRLKNLNG-----IP-S-AC 107 (263)
T ss_dssp TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSCCSCCTT-----CC-C-SS
T ss_pred CcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCccCCcCc-----cc-c-Cc
Confidence 44555555555444332 3445566666666655 2222211 2345666666666654433321 11 1 56
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEE
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKV 430 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L 430 (529)
|+.|++++|.+++.. .+ ..+++|+.|+++++. +++.. ....+++|+.|++++|.+++. ..+ ..+++|+.|
T Consensus 108 L~~L~L~~N~l~~~~--~l-~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~l-~~l~~L~~L 177 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD--SL-IHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGNEITNT--GGL-TRLKKVNWI 177 (263)
T ss_dssp CCEEECCSSCCSBSG--GG-TTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTSCCCBC--TTS-TTCCCCCEE
T ss_pred ccEEEccCCccCCCh--hh-cCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCCcCcch--HHh-ccCCCCCEE
Confidence 777777777665532 22 566777777777664 44321 123467777777777776654 222 356777777
Q ss_pred EeccCC
Q 009671 431 KVKKCR 436 (529)
Q Consensus 431 ~l~~c~ 436 (529)
++.++.
T Consensus 178 ~l~~N~ 183 (263)
T 1xeu_A 178 DLTGQK 183 (263)
T ss_dssp EEEEEE
T ss_pred eCCCCc
Confidence 777766
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=2.6e-10 Score=95.64 Aligned_cols=84 Identities=29% Similarity=0.320 Sum_probs=35.4
Q ss_pred CccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHH--HHHHhcCC
Q 009671 348 CPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGM--EALAGGCP 425 (529)
Q Consensus 348 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l--~~l~~~~~ 425 (529)
+++|+.|++++|.++.. +......+++|++|++++|. +++.........+++|++|++++|++++... ......++
T Consensus 63 l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 140 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140 (149)
T ss_dssp CTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC
Confidence 34444444444444432 11222344555555555443 3332211222335555555555555433221 11222455
Q ss_pred CccEEEec
Q 009671 426 NLVKVKVK 433 (529)
Q Consensus 426 ~L~~L~l~ 433 (529)
+|+.|+++
T Consensus 141 ~L~~L~l~ 148 (149)
T 2je0_A 141 QLTYLDGY 148 (149)
T ss_dssp TCCEETTB
T ss_pred CcccccCC
Confidence 55555543
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.91 E-value=8.6e-10 Score=101.37 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=42.9
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|+.|+|++|....+... ....+++|+.|++++|.++......+ ..+++|++|+++++. ++.... .....+
T Consensus 106 l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l 178 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAF-DKLTNLQTLSLSTNQ-LQSVPH-GAFDRL 178 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CSCCCT-TTTTTC
T ss_pred cCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHc-CcCcCCCEEECCCCc-CCccCH-HHHhCC
Confidence 44555555555443333221 11234566666666665543322222 455666666666653 221111 112346
Q ss_pred CcCCEEEeccCCCC
Q 009671 400 VALKKLCIKSCPVS 413 (529)
Q Consensus 400 ~~L~~L~l~~~~i~ 413 (529)
++|+.|++++|+++
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 67777777777654
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.89 E-value=6.1e-10 Score=103.02 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=109.8
Q ss_pred hhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhC
Q 009671 241 IIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERC 320 (529)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 320 (529)
+..+++|+.|+++++. +... . -...+++|+.|++++|.+++... +..+++|+.|+++++. ++.. ..+..
T Consensus 37 ~~~l~~L~~L~l~~n~-i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l--~~~~~-- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-IQSL--A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNL--NGIPS-- 105 (263)
T ss_dssp HHHHTTCSEEECTTSC-CCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCC--TTCCC--
T ss_pred hhhcCcCcEEECcCCC-cccc--h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCc--Ccccc--
Confidence 4567899999998874 2221 1 23467889999999998887654 7789999999999883 3332 11211
Q ss_pred CCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCC
Q 009671 321 KLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCV 400 (529)
Q Consensus 321 ~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 400 (529)
++|+.|++++|....+. ....+++|+.|++++|.+++.. .+ ..+++|+.|++++|. +++. .....++
T Consensus 106 ~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~Ls~N~i~~~~--~l-~~l~~L~~L~L~~N~-i~~~---~~l~~l~ 172 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD------SLIHLKNLEILSIRNNKLKSIV--ML-GFLSKLEVLDLHGNE-ITNT---GGLTRLK 172 (263)
T ss_dssp SSCCEEECCSSCCSBSG------GGTTCTTCCEEECTTSCCCBCG--GG-GGCTTCCEEECTTSC-CCBC---TTSTTCC
T ss_pred CcccEEEccCCccCCCh------hhcCcccccEEECCCCcCCCCh--HH-ccCCCCCEEECCCCc-Ccch---HHhccCC
Confidence 78999999998655442 1446899999999999888753 33 789999999999985 5543 2234589
Q ss_pred cCCEEEeccCCCCH
Q 009671 401 ALKKLCIKSCPVSD 414 (529)
Q Consensus 401 ~L~~L~l~~~~i~~ 414 (529)
+|+.|++++|+++.
T Consensus 173 ~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 173 KVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCEEEEEEEEEEC
T ss_pred CCCEEeCCCCcccC
Confidence 99999999998654
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=2.3e-10 Score=98.12 Aligned_cols=88 Identities=25% Similarity=0.250 Sum_probs=42.9
Q ss_pred cCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHH--HHHHhcC
Q 009671 347 CCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGM--EALAGGC 424 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l--~~l~~~~ 424 (529)
.+++|+.|++++|.+... +..+...+++|++|++++|. +++.........+++|+.|++++|++++... ......+
T Consensus 69 ~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp CCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred cCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 345555555555555442 22222445566666665553 3331110112235666666666666443221 1233356
Q ss_pred CCccEEEeccCC
Q 009671 425 PNLVKVKVKKCR 436 (529)
Q Consensus 425 ~~L~~L~l~~c~ 436 (529)
++|+.|++.+|.
T Consensus 147 ~~L~~L~l~~n~ 158 (168)
T 2ell_A 147 PQLTYLDGYDRE 158 (168)
T ss_dssp SSCCEETTEETT
T ss_pred ccCcEecCCCCC
Confidence 667777666665
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1.1e-09 Score=105.17 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=49.0
Q ss_pred CCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCC--HH---H--------------HHHHHhc------
Q 009671 111 FDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELT--DA---G--------------MSVFAKN------ 165 (529)
Q Consensus 111 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~~---~--------------l~~l~~~------ 165 (529)
+.+++.|++. ..+....+..+...+++|+.|+|+++ .+. .. . -...+..
T Consensus 24 ~~~l~~L~l~-----g~i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLT-----GKLNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEE-----EEECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred hCceeEEEEe-----ccccHHHHHHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccc
Confidence 4568888886 34566777777766889999999864 333 00 0 0112234
Q ss_pred --CCCCCEEEecCccc---ChHHHHHHHhcCCCCCEEecCCc
Q 009671 166 --CKGLKKLSCGSCTF---GAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 166 --~~~L~~L~L~~~~~---~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
|++|++|+|.. .+ .+.. +..|++|+.+++...
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~a----F~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAA----FKGCDNLKICQIRKK 134 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTT----TTTCTTCCEEEBCCS
T ss_pred cccCCCcEEECCc-cccchhHHH----hhcCcccceEEcCCC
Confidence 77777777776 32 2222 346777777777654
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.79 E-value=3.6e-09 Score=88.58 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=76.9
Q ss_pred CCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCC
Q 009671 167 KGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKN 246 (529)
Q Consensus 167 ~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 246 (529)
++|++|++++|.+++..+...+..+++|+.|++.++ .+... ..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~------------------------------~~~~~l~~ 65 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI------------------------------ANLPKLNK 65 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC------------------------------TTCCCCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc------------------------------hhhhcCCC
Confidence 456666666666542223333445667777777665 22221 12245677
Q ss_pred CCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHH-HHHhhcCCCCCeEEecCCCCCChhhH--HHHHHhCCCC
Q 009671 247 LRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVG-LAAISNCLDLEIMHLVKTPECTNLGL--AAVAERCKLL 323 (529)
Q Consensus 247 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~l--~~l~~~~~~L 323 (529)
|++|+++++.-.. . +......+++|+.|++++|.+++.. ...+..+++|+.|+++++ .++.... ......+++|
T Consensus 66 L~~L~Ls~n~i~~-~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 66 LKKLELSDNRVSG-G-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CCEEECCSSCCCS-C-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTC
T ss_pred CCEEECCCCcccc-h-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCc
Confidence 7777777754221 1 3344455777888888888777753 355677888888888887 3333221 1244557888
Q ss_pred cEEEec
Q 009671 324 RKLHID 329 (529)
Q Consensus 324 ~~L~L~ 329 (529)
+.|+++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 888764
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=1.4e-09 Score=93.16 Aligned_cols=63 Identities=24% Similarity=0.203 Sum_probs=28.9
Q ss_pred cCccccceEeecccCcHHHH-HHHHhcCCCCCEEEccCCCCCChhH-H-HHHHHcCCcCCEEEeccCC
Q 009671 347 CCPNLQELVLIGVNPTRVSL-EVLASNCQNLERLALCGSDTVGDVE-I-SCIAAKCVALKKLCIKSCP 411 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l-~~l~~~~~~L~~L~l~~~~~~~~~~-l-~~l~~~~~~L~~L~l~~~~ 411 (529)
.+++|+.|++++|.+++... ..+ ..+++|++|++++|. ++... . ......+++|+.|++++|.
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hCCCCCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 34555555555555444211 122 445555566555553 22211 1 1233345666666666654
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=1e-09 Score=105.27 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=57.0
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccC-CCcc
Q 009671 141 RNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIG-PGVA 219 (529)
Q Consensus 141 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~ 219 (529)
+++++|.+++ .+....+..+...+++|+.|+|+++.+..-... ...++.++.+.+... .+....+..... ....
T Consensus 25 ~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~-~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 25 NSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMAN-FVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTT-EECTTTTEEEETTEEEE
T ss_pred CceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccc-ccCHHHhcccccccccc
Confidence 3688888886 466666766665588899999998876410000 001222222222221 223322220000 0001
Q ss_pred cCccchhhccccccCCcchhhhhcCCCCCeEecccc
Q 009671 220 ASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRC 255 (529)
Q Consensus 220 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 255 (529)
+.+|+.+.+.. .....-...+.+|++|+.|++...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC
Confidence 67777777766 333333345677888888888764
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.74 E-value=8.8e-09 Score=105.36 Aligned_cols=152 Identities=11% Similarity=0.047 Sum_probs=74.5
Q ss_pred cCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCc
Q 009671 270 VTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCP 349 (529)
Q Consensus 270 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~ 349 (529)
+++|+.|++++|.++.... +. .+|+.|+++++. ++.. .. .+++|+.|++++|....+.. .++
T Consensus 99 l~~L~~L~Ls~N~l~~ip~--l~--~~L~~L~Ls~N~-l~~l--p~---~l~~L~~L~Ls~N~l~~lp~--------~l~ 160 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE--LP--ASLKHLDVDNNQ-LTML--PE---LPALLEYINADNNQLTMLPE--------LPT 160 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC-CSCC--CC---CCTTCCEEECCSSCCSCCCC--------CCT
T ss_pred cCCCCEEEccCCCCCCcch--hh--cCCCEEECCCCc-CCCC--CC---cCccccEEeCCCCccCcCCC--------cCC
Confidence 4556666666655544221 22 166666666552 2221 11 35566666666654433332 345
Q ss_pred cccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHH-H-HHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCc
Q 009671 350 NLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEI-S-CIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNL 427 (529)
Q Consensus 350 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l-~-~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 427 (529)
+|+.|++++|.++.... + . ++|+.|++++|. ++.-.. . .+....+.|+.|++++|.|+.. ...+. .+++|
T Consensus 161 ~L~~L~Ls~N~L~~lp~--l-~--~~L~~L~Ls~N~-L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~-~l~~L 232 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE--L-P--ESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHI-PENIL-SLDPT 232 (571)
T ss_dssp TCCEEECCSSCCSCCCC--C-C--TTCCEEECCSSC-CSSCCCCC--------CCEEEECCSSCCCCC-CGGGG-GSCTT
T ss_pred CcCEEECCCCCCCCcch--h-h--CCCCEEECcCCC-CCchhhHHHhhhcccccceEEecCCCcceec-CHHHh-cCCCC
Confidence 66666666666554221 2 1 566666666653 221100 0 1111122337777777776531 11233 36777
Q ss_pred cEEEeccCCCCCHHHHHHHHh
Q 009671 428 VKVKVKKCRAVTTEGADWLRA 448 (529)
Q Consensus 428 ~~L~l~~c~~i~~~~~~~l~~ 448 (529)
+.|+|++|. ++......+..
T Consensus 233 ~~L~L~~N~-l~~~~p~~l~~ 252 (571)
T 3cvr_A 233 CTIILEDNP-LSSRIRESLSQ 252 (571)
T ss_dssp EEEECCSSS-CCHHHHHHHHH
T ss_pred CEEEeeCCc-CCCcCHHHHHH
Confidence 777777776 66654444443
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.72 E-value=1.2e-09 Score=106.21 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=65.7
Q ss_pred ccEEEeeccccChHHHHHhh-cCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccc
Q 009671 273 LVEIHLERIQVTDVGLAAIS-NCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNL 351 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L 351 (529)
++.|++++|.++......+. .+++|+.|+|+++ .++...-.. ...+++|+.|+|++|....+.... ...+++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L 114 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNHLHTLDEFL----FSDLQAL 114 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECTTT----TTTCTTC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCcCCcCCHHH----hCCCcCC
Confidence 44444444444433333333 4445555555444 222111111 112445555555554433332211 1234555
Q ss_pred cceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHH--HHcCCcCCEEEeccCCCCHHHHHHHHhcCCC--c
Q 009671 352 QELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCI--AAKCVALKKLCIKSCPVSDHGMEALAGGCPN--L 427 (529)
Q Consensus 352 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~--L 427 (529)
+.|+|++|.+.......+ ..+++|+.|+++++. ++......+ ...+++|+.|+|++|.++......+. .++. |
T Consensus 115 ~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~~~l 191 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ-KLPAWVK 191 (361)
T ss_dssp CEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH-HSCHHHH
T ss_pred CEEECCCCcccEECHHHh-CCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh-hccHhhc
Confidence 555555555543322222 445566666665553 222111100 02356666666666665443333333 2443 3
Q ss_pred cEEEeccCC
Q 009671 428 VKVKVKKCR 436 (529)
Q Consensus 428 ~~L~l~~c~ 436 (529)
+.|++.+++
T Consensus 192 ~~l~l~~N~ 200 (361)
T 2xot_A 192 NGLYLHNNP 200 (361)
T ss_dssp TTEECCSSC
T ss_pred ceEEecCCC
Confidence 556666655
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.71 E-value=1.5e-09 Score=96.57 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=44.5
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcccc
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQ 352 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~ 352 (529)
|++|+++++.++......+..+++|++|+++++ .++.... .....+++|++|++++|....+... ....+++|+
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~ 103 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQLQSLPNG----VFDKLTQLK 103 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCcCCccCHh----HhcCccCCC
Confidence 445555544444333333344555555555554 2221110 0112245555555555433322221 112345555
Q ss_pred ceEeecccCcHHHHHHHHhcCCCCCEEEccCC
Q 009671 353 ELVLIGVNPTRVSLEVLASNCQNLERLALCGS 384 (529)
Q Consensus 353 ~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 384 (529)
+|++++|.++......+ ..+++|++|+++++
T Consensus 104 ~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVF-DKLTQLKDLRLYQN 134 (208)
T ss_dssp EEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred EEEcCCCcCcccCHhHh-ccCCcCCEEECCCC
Confidence 55555555443221111 34455555555544
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.66 E-value=1.5e-08 Score=103.61 Aligned_cols=192 Identities=12% Similarity=0.013 Sum_probs=103.2
Q ss_pred CCCCCEEEecCcccChHHHHHHHhcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCC
Q 009671 166 CKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAK 245 (529)
Q Consensus 166 ~~~L~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 245 (529)
+.+|+.|+++++.++. +.. ..+++|+.|+++++. ++. +. ..++
T Consensus 58 ~~~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N~-l~~--ip------------------------------~~l~ 100 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS--LPD--NLPPQITVLEITQNA-LIS--LP------------------------------ELPA 100 (571)
T ss_dssp HTTCSEEECCSSCCSC--CCS--CCCTTCSEEECCSSC-CSC--CC------------------------------CCCT
T ss_pred cCCccEEEeCCCCCCc--cCH--hHcCCCCEEECcCCC-Ccc--cc------------------------------cccC
Confidence 3589999998887643 221 124678888888762 332 11 1235
Q ss_pred CCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcE
Q 009671 246 NLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRK 325 (529)
Q Consensus 246 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 325 (529)
+|++|+++++. +.. +..+ ..+|+.|++++|.++.... .+++|+.|+++++. ++... . .+++|+.
T Consensus 101 ~L~~L~Ls~N~-l~~--ip~l---~~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~-l~~lp--~---~l~~L~~ 164 (571)
T 3cvr_A 101 SLEYLDACDNR-LST--LPEL---PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQ-LTMLP--E---LPTSLEV 164 (571)
T ss_dssp TCCEEECCSSC-CSC--CCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC-CSCCC--C---CCTTCCE
T ss_pred CCCEEEccCCC-CCC--cchh---hcCCCEEECCCCcCCCCCC----cCccccEEeCCCCc-cCcCC--C---cCCCcCE
Confidence 66666666542 111 1111 1156666666665554221 45677777776662 22211 1 3567777
Q ss_pred EEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHH--HHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCC
Q 009671 326 LHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSL--EVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALK 403 (529)
Q Consensus 326 L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l--~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~ 403 (529)
|+|++|....+.. + .++|+.|++++|.++.... ..+....+.|+.|++++|. ++. +..-...+++|+
T Consensus 165 L~Ls~N~L~~lp~--l------~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~ 233 (571)
T 3cvr_A 165 LSVRNNQLTFLPE--L------PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITH--IPENILSLDPTC 233 (571)
T ss_dssp EECCSSCCSCCCC--C------CTTCCEEECCSSCCSSCCCCC--------CCEEEECCSSC-CCC--CCGGGGGSCTTE
T ss_pred EECCCCCCCCcch--h------hCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCc-cee--cCHHHhcCCCCC
Confidence 7777765444433 1 1677777777776653211 0111122233888887764 332 111122377888
Q ss_pred EEEeccCCCCHHHHHHHH
Q 009671 404 KLCIKSCPVSDHGMEALA 421 (529)
Q Consensus 404 ~L~l~~~~i~~~~l~~l~ 421 (529)
.|+|++|+++......+.
T Consensus 234 ~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 234 TIILEDNPLSSRIRESLS 251 (571)
T ss_dssp EEECCSSSCCHHHHHHHH
T ss_pred EEEeeCCcCCCcCHHHHH
Confidence 888888888776655544
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.66 E-value=6.4e-10 Score=114.27 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=52.9
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|+.|+|++|....+.. ....+++|+.|+|++|.++... .+ ..+++|+.|++++|. ++..........+
T Consensus 462 l~~L~~L~Ls~N~l~~lp~-----~~~~l~~L~~L~Ls~N~l~~lp--~l-~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l 532 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDNALENVD--GV-ANLPRLQELLLCNNR-LQQSAAIQPLVSC 532 (567)
T ss_dssp GTTCCEEECCSSCCCCCCG-----GGGGCTTCCEEECCSSCCCCCG--GG-TTCSSCCEEECCSSC-CCSSSTTGGGGGC
T ss_pred cccCcEeecCcccccccch-----hhhcCCCCCEEECCCCCCCCCc--cc-CCCCCCcEEECCCCC-CCCCCCcHHHhcC
Confidence 4556666665554333322 1234566666666666655422 22 556666666666653 3222101112346
Q ss_pred CcCCEEEeccCCCCHH--HHHHHHhcCCCccEEEe
Q 009671 400 VALKKLCIKSCPVSDH--GMEALAGGCPNLVKVKV 432 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~--~l~~l~~~~~~L~~L~l 432 (529)
++|+.|+|++|+++.. ....+...+|+|+.|++
T Consensus 533 ~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 533 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6777777777764432 12233334677777653
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.63 E-value=4.4e-09 Score=94.37 Aligned_cols=106 Identities=21% Similarity=0.242 Sum_probs=47.8
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccc
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNL 351 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L 351 (529)
+|+.|+++++.++......+..+++|+.|+|+++ .++...-.. ...+++|+.|+|++|....+... +...+++|
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L 106 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGNKITELPKS----LFEGLFSL 106 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSSCCCCCCTT----TTTTCTTC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCCcCCccCHh----HccCCCCC
Confidence 4566666665555444334455566666666655 222211111 12245566666655543333221 11234555
Q ss_pred cceEeecccCcHHHHHHHHhcCCCCCEEEccCC
Q 009671 352 QELVLIGVNPTRVSLEVLASNCQNLERLALCGS 384 (529)
Q Consensus 352 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 384 (529)
+.|+|++|.++......+ ..+++|++|+++++
T Consensus 107 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAF-QDLHNLNLLSLYDN 138 (220)
T ss_dssp CEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred CEEECCCCCCCEeCHHHc-CCCCCCCEEECCCC
Confidence 555555555443222222 33444444444443
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.62 E-value=6.1e-09 Score=91.82 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=50.3
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|+.|++++|....+.. ....+++|+.|++++|.++... .+ ..+++|++|+++++. +++.........+
T Consensus 69 l~~L~~L~l~~n~l~~l~~-----~~~~~~~L~~L~L~~N~l~~l~--~~-~~l~~L~~L~l~~N~-i~~~~~~~~l~~l 139 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIEN-----LDAVADTLEELWISYNQIASLS--GI-EKLVNLRVLYMSNNK-ITNWGEIDKLAAL 139 (198)
T ss_dssp HTTCCEEEEEEEEECSCSS-----HHHHHHHCSEEEEEEEECCCHH--HH-HHHHHSSEEEESEEE-CCCHHHHHHHTTT
T ss_pred CCCCCEEECCCCCcccccc-----hhhcCCcCCEEECcCCcCCcCC--cc-ccCCCCCEEECCCCc-CCchhHHHHHhcC
Confidence 4556666665554333321 1223355666666666555422 22 445566666666553 3332211222345
Q ss_pred CcCCEEEeccCCCCHH---------HHHHHHhcCCCccEEE
Q 009671 400 VALKKLCIKSCPVSDH---------GMEALAGGCPNLVKVK 431 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~~---------~l~~l~~~~~~L~~L~ 431 (529)
++|+.|++++|++++. ....+...+++|+.|+
T Consensus 140 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666666666654332 1122233567777765
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.62 E-value=2.1e-09 Score=95.69 Aligned_cols=150 Identities=18% Similarity=0.136 Sum_probs=86.7
Q ss_pred CCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCc
Q 009671 245 KNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLR 324 (529)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 324 (529)
++|++|+++++. +.. ........+++|++|+++++.++......+..+++|++|+++++ .++.... .....+++|+
T Consensus 28 ~~l~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN-GVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCC
T ss_pred CCCcEEEcCCCc-cCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCH-hHhcCccCCC
Confidence 467777776653 111 11112235567777777777666554444566788888888876 2332211 1123467888
Q ss_pred EEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCE
Q 009671 325 KLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKK 404 (529)
Q Consensus 325 ~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~ 404 (529)
.|+++++....+... ....+++|+.|++++|.++......+ ..+++|++|+++++.... .+++|+.
T Consensus 104 ~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~~---------~~~~l~~ 169 (208)
T 2o6s_A 104 ELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWLHDNPWDC---------TCPGIRY 169 (208)
T ss_dssp EEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSCCBCC---------CTTTTHH
T ss_pred EEEcCCCcCcccCHh----HhccCCcCCEEECCCCccceeCHHHh-ccCCCccEEEecCCCeec---------CCCCHHH
Confidence 888888765544432 22457889999998887764332222 456677777776664221 2445555
Q ss_pred EEeccCCC
Q 009671 405 LCIKSCPV 412 (529)
Q Consensus 405 L~l~~~~i 412 (529)
|+++.+.+
T Consensus 170 L~~~~n~~ 177 (208)
T 2o6s_A 170 LSEWINKH 177 (208)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 55554443
No 126
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.59 E-value=5.8e-07 Score=77.40 Aligned_cols=120 Identities=9% Similarity=0.117 Sum_probs=62.5
Q ss_pred hHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcC---ccccceEeecccCcHHHHHHHH---hcCCCCCEEEccCCC
Q 009671 312 GLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCC---PNLQELVLIGVNPTRVSLEVLA---SNCQNLERLALCGSD 385 (529)
Q Consensus 312 ~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~---~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~ 385 (529)
.+..+...-+.|++|+|+++ ..+++.+...++..+ ..|+.|+|++|.+.+.+..+++ ..-+.|++|+|+.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~n--n~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNM--KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTC--CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHhcCCCccEEECCCC--CCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 34444444566777777642 246666665554432 4566666666666666544332 233456666665543
Q ss_pred CCChhHHHHHHHcC---CcCCEEEeccC---CCCHHHHHHHHh---cCCCccEEEecc
Q 009671 386 TVGDVEISCIAAKC---VALKKLCIKSC---PVSDHGMEALAG---GCPNLVKVKVKK 434 (529)
Q Consensus 386 ~~~~~~l~~l~~~~---~~L~~L~l~~~---~i~~~~l~~l~~---~~~~L~~L~l~~ 434 (529)
+++.+...+++.+ +.|++|+|+++ .+++.+...+++ .-+.|+.|++..
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 5555555555443 24566666543 345554433332 234555555543
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=1.7e-09 Score=111.07 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=111.2
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccc-------------cChHHHHHhhcCCCCCeEE-ecCCCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQ-------------VTDVGLAAISNCLDLEIMH-LVKTPE 307 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-------------l~~~~~~~l~~~~~L~~L~-L~~~~~ 307 (529)
..+++|+.|+++++. + ..++.-...+++|++|+++++. ........++.+++|+.|+ ++.+ .
T Consensus 346 ~~~~~L~~L~Ls~n~-L--~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-S--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-Y 421 (567)
T ss_dssp STTTTSSSCCCCHHH-H--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-H
T ss_pred ccCccceeccCChhh-H--HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-c
Confidence 345666666666532 1 1233333345556666654432 2222233445566777776 3321 1
Q ss_pred CC--------hhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEE
Q 009671 308 CT--------NLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERL 379 (529)
Q Consensus 308 ~~--------~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L 379 (529)
+. ...+..+. ...|+.|+|++|....+.. ...+++|+.|++++|.++. +...+..+++|+.|
T Consensus 422 ~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~l~~lp~------~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L 491 (567)
T 1dce_A 422 LDDLRSKFLLENSVLKME--YADVRVLHLAHKDLTVLCH------LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVL 491 (567)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTTCSEEECTTSCCSSCCC------GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEE
T ss_pred cchhhhhhhhcccccccC--ccCceEEEecCCCCCCCcC------ccccccCcEeecCcccccc--cchhhhcCCCCCEE
Confidence 11 11222222 2469999999987655542 3468899999999998873 22233789999999
Q ss_pred EccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHH-HHHHHhcCCCccEEEeccCCCCCH
Q 009671 380 ALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHG-MEALAGGCPNLVKVKVKKCRAVTT 440 (529)
Q Consensus 380 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~-l~~l~~~~~~L~~L~l~~c~~i~~ 440 (529)
+++++. ++. +. -...+++|+.|+|++|.++... ...+. .+++|+.|+++++. ++.
T Consensus 492 ~Ls~N~-l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~-l~~ 547 (567)
T 1dce_A 492 QASDNA-LEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNS-LCQ 547 (567)
T ss_dssp ECCSSC-CCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSG-GGG
T ss_pred ECCCCC-CCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCc-CCC
Confidence 999885 443 22 2345899999999999987653 34444 69999999999987 543
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.58 E-value=1.1e-08 Score=88.29 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=53.3
Q ss_pred CCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCC
Q 009671 321 KLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCV 400 (529)
Q Consensus 321 ~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 400 (529)
++|+.|++++|....+ .....+++|+.|++++|.++..... +...+++|++|+++++. +++..-......++
T Consensus 42 ~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEG-LDQALPDLTELILTNNS-LVELGDLDPLASLK 113 (176)
T ss_dssp TCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSC-HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCT
T ss_pred CCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCcc-hhhcCCCCCEEECCCCc-CCcchhhHhhhcCC
Confidence 3555555555433222 1122355666666666655532211 12456666666666663 33211101123466
Q ss_pred cCCEEEeccCCCCHHHH--HHHHhcCCCccEEEeccCC
Q 009671 401 ALKKLCIKSCPVSDHGM--EALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 401 ~L~~L~l~~~~i~~~~l--~~l~~~~~~L~~L~l~~c~ 436 (529)
+|+.|++++|+++.... ..+...+++|+.|++.++.
T Consensus 114 ~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 67777777776443111 1123356777777777665
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.57 E-value=1.8e-08 Score=90.99 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=20.3
Q ss_pred cCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 398 KCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 398 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
.+++|+.|++++|.++...... ...+++|+.|++.+++
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGA-FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCcCCccCHHH-HhCCCCCCEEEeeCCC
Confidence 4556666666666544321111 2245666666666665
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.57 E-value=2.5e-08 Score=85.99 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=30.3
Q ss_pred hcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 242 IGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
..+++|+.|+++++. +.. +..+....++|+.|++++|.++.. ..+..+++|+.|+++++
T Consensus 16 ~~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp ECTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS
T ss_pred CCcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC
Confidence 456677777777653 221 112233334566666666655543 23444555555555544
No 131
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.52 E-value=5.5e-07 Score=77.55 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=61.9
Q ss_pred cCCCCCeEEecCCCCCChhhHHHHHHh---CCCCcEEEecCcccCccChHHHHHHHh---cCccccceEeecccCcHHHH
Q 009671 293 NCLDLEIMHLVKTPECTNLGLAAVAER---CKLLRKLHIDGWKANRIGDEGLIAVAK---CCPNLQELVLIGVNPTRVSL 366 (529)
Q Consensus 293 ~~~~L~~L~L~~~~~~~~~~l~~l~~~---~~~L~~L~L~~~~~~~i~~~~l~~~~~---~~~~L~~L~L~~~~i~~~~l 366 (529)
.-+.|+.|+|+++..+.+.+...+++. -..|+.|+|++| .+++.+...++. .-..|++|+|++|.|.+.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n---~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT---AISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS---CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC---CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 345666666655445556555554442 245666666654 355555444332 33566666666666666666
Q ss_pred HHHHhcC---CCCCEEEccCCC--CCChhHHHHHH---HcCCcCCEEEeccCCC
Q 009671 367 EVLASNC---QNLERLALCGSD--TVGDVEISCIA---AKCVALKKLCIKSCPV 412 (529)
Q Consensus 367 ~~l~~~~---~~L~~L~l~~~~--~~~~~~l~~l~---~~~~~L~~L~l~~~~i 412 (529)
.+++..+ ..|++|+|+++. .+++.+...++ +.-+.|+.|+++.+.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 5554433 346666665431 34555433332 2335566666665543
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.50 E-value=1.5e-09 Score=105.17 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=67.1
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcE-EEecCcccCccChHHHHHHHhcCcc
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRK-LHIDGWKANRIGDEGLIAVAKCCPN 350 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~-L~L~~~~~~~i~~~~l~~~~~~~~~ 350 (529)
++++|++++|.++......+..+++|++|+|+++.-.+.... ....+++++.+ +.+.++....+.... ...+++
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~----f~~l~~ 105 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEA----FQNLPN 105 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTS----BCCCTT
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchh----hhhccc
Confidence 455555555555544434445556666666665532111110 01112344443 233333322232211 234566
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEE
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKV 430 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L 430 (529)
|+.|++++|.+....-... ....++..|++.++..++......+......++.|++++|.++...... . ...+|+.+
T Consensus 106 L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f-~~~~L~~l 182 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-F-NGTQLDEL 182 (350)
T ss_dssp CCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-S-TTEEEEEE
T ss_pred cccccccccccccCCchhh-cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-c-cccchhHH
Confidence 6666666665543211111 1223455555544433322111111111234666666666654311111 1 23456666
Q ss_pred EeccCCCCC
Q 009671 431 KVKKCRAVT 439 (529)
Q Consensus 431 ~l~~c~~i~ 439 (529)
.+.++..++
T Consensus 183 ~l~~~n~l~ 191 (350)
T 4ay9_X 183 NLSDNNNLE 191 (350)
T ss_dssp ECTTCTTCC
T ss_pred hhccCCccc
Confidence 666555444
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.50 E-value=2.3e-08 Score=97.16 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=15.1
Q ss_pred CEEEecCcccChHHHHHHHhcCCCCCEEecCCc
Q 009671 170 KKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRL 202 (529)
Q Consensus 170 ~~L~L~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 202 (529)
+.++++++.++. ++. ...+.++.|+|+++
T Consensus 21 ~~l~c~~~~l~~--iP~--~~~~~l~~L~Ls~N 49 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQ--SLPSYTALLDLSHN 49 (361)
T ss_dssp TEEECCSSCCSS--CCS--SCCTTCSEEECCSS
T ss_pred CEEEeCCCCcCc--cCc--cCCCCCCEEECCCC
Confidence 466666665432 110 12245777777765
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.49 E-value=2.2e-08 Score=88.21 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=84.1
Q ss_pred HhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHh
Q 009671 267 TDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAK 346 (529)
Q Consensus 267 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~ 346 (529)
...+++|+.|++++|.++... .+..+++|+.|+++++ .++. +......+++|+.|++++|....+ .. ..
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~l~~l-----~~-~~ 112 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIASL-----SG-IE 112 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEECCCH-----HH-HH
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCcCCcC-----Cc-cc
Confidence 345667788887777666633 5566778888888776 2331 222333356788998888754332 22 23
Q ss_pred cCccccceEeecccCcHHHH-HHHHhcCCCCCEEEccCCCCCChh---------HHHHHHHcCCcCCEEEeccCCCC
Q 009671 347 CCPNLQELVLIGVNPTRVSL-EVLASNCQNLERLALCGSDTVGDV---------EISCIAAKCVALKKLCIKSCPVS 413 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l-~~l~~~~~~L~~L~l~~~~~~~~~---------~l~~l~~~~~~L~~L~l~~~~i~ 413 (529)
.+++|+.|++++|.+++... ..+ ..+++|++|++++|. ++.. ....+...+++|+.|+ +++++
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKL-AALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHH-TTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCCCCEEECCCCcCCchhHHHHH-hcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 56789999999888886443 334 778889999998874 3221 1223345688999887 55543
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.47 E-value=2.3e-08 Score=89.69 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=41.6
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|+.|+|++|....+.... ...+++|++|++++|.++......+ ..+++|++|+++++. ++...- .....+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l 152 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQ-ITTVAP-GAFDTL 152 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSC-CCCBCT-TTTTTC
T ss_pred CCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHc-CCCccCCEEECCCCc-CCEECH-HHhcCC
Confidence 455555555554433333221 1245556666666655543322222 455666666666553 222110 111235
Q ss_pred CcCCEEEeccCCC
Q 009671 400 VALKKLCIKSCPV 412 (529)
Q Consensus 400 ~~L~~L~l~~~~i 412 (529)
++|+.|++++|++
T Consensus 153 ~~L~~L~L~~N~l 165 (220)
T 2v70_A 153 HSLSTLNLLANPF 165 (220)
T ss_dssp TTCCEEECCSCCE
T ss_pred CCCCEEEecCcCC
Confidence 6777777777763
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.45 E-value=4.9e-09 Score=101.45 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCCcEEEecC-cccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 321 KLLRKLHIDG-WKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 321 ~~L~~L~L~~-~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
.+|++|.+.+ +....+.... ...+++|+.|++++|.++.... ..+.+|+.|.+.++..+..- .. ...+
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~----f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~l--P~-l~~l 245 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDV----FHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKL--PT-LEKL 245 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTT----TTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCC--CC-TTTC
T ss_pred cchhHHhhccCCcccCCCHHH----hccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcC--CC-chhC
Confidence 4566666653 2233333221 2345677777777776654321 23455666666555433221 11 2346
Q ss_pred CcCCEEEecc
Q 009671 400 VALKKLCIKS 409 (529)
Q Consensus 400 ~~L~~L~l~~ 409 (529)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 7777777764
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.44 E-value=6.3e-08 Score=87.41 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCcc
Q 009671 271 TSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPN 350 (529)
Q Consensus 271 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~ 350 (529)
++|+.|++++|.++......+..+++|+.|+|+++ .++...- .....+++|+.|+|++|....+... ...+++
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~ 136 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCNKLTELPRG-----IERLTH 136 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCSCCTT-----GGGCTT
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCCcccccCcc-----cccCCC
Confidence 33444444444333332223344455555555544 2221110 1112345566666655543333211 134566
Q ss_pred ccceEeecccCcHHHHHHHHhcCCCCCEEEccCCC
Q 009671 351 LQELVLIGVNPTRVSLEVLASNCQNLERLALCGSD 385 (529)
Q Consensus 351 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 385 (529)
|+.|++++|.++......+ ..+++|+.|++.++.
T Consensus 137 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPHGAF-DRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSEEECCSSCCCCCCTTTT-TTCTTCCEEECTTSC
T ss_pred CCEEECCCCcCCccCHHHH-hCCCCCCEEEeeCCC
Confidence 6666666665553322222 456667777776654
No 138
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.43 E-value=3.2e-08 Score=88.74 Aligned_cols=132 Identities=16% Similarity=0.111 Sum_probs=78.5
Q ss_pred CCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCc
Q 009671 245 KNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLR 324 (529)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~ 324 (529)
++|+.|+++++. +... .......+++|+.|++++|.++......+..+++|+.|+|+++ .++...- .....+++|+
T Consensus 32 ~~l~~L~l~~n~-i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPK-SLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSC-CCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCT-TTTTTCTTCC
T ss_pred cCCCEEECCCCc-CCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCH-hHccCCCCCC
Confidence 456666666643 1110 0011234566777777777776655556667788888888876 3332211 1223467888
Q ss_pred EEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCC
Q 009671 325 KLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSD 385 (529)
Q Consensus 325 ~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 385 (529)
.|+|++|....+.... ...+++|+.|+|++|.++......+ ..+++|++|+++++.
T Consensus 108 ~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 108 LLLLNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred EEECCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECHHHH-hCCCCCCEEEeCCCC
Confidence 8888887655554332 2356888899998887765433222 455666666666654
No 139
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.34 E-value=1.9e-07 Score=83.59 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=31.9
Q ss_pred hcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcc
Q 009671 269 RVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWK 332 (529)
Q Consensus 269 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 332 (529)
.+++|++|++++|.++......+..+++|+.|+|+++ .++...-. ....+++|+.|++++|.
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEecCcC
Confidence 3455666666665555444444455666666666665 22221111 11235667777776654
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.15 E-value=8.1e-07 Score=77.62 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=14.4
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
|++|++++|.++... ..+..+++|+.|+++++
T Consensus 33 l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N 64 (193)
T 2wfh_A 33 VTELYLDGNQFTLVP-KELSNYKHLTLIDLSNN 64 (193)
T ss_dssp CCEEECCSSCCCSCC-GGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCchhH-HHhhcccCCCEEECCCC
Confidence 444555444443222 23344455555555444
No 141
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.14 E-value=7.3e-07 Score=81.60 Aligned_cols=40 Identities=30% Similarity=0.695 Sum_probs=36.5
Q ss_pred CCCcccCCCHHHHHHHHccCChhhhh-HHHHHhHHHHHhhc
Q 009671 47 AYDYISNLPDECLACIFQSLSSGDRK-RCSLVCRRWLRIEG 86 (529)
Q Consensus 47 ~~~~~~~LP~eil~~If~~L~~~d~~-~~~~Vck~W~~~~~ 86 (529)
....+..||+||+.+||.+|++++++ +|++|||+|+.++.
T Consensus 47 ~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred cccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 34678999999999999999999999 99999999999844
No 142
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.13 E-value=3.5e-07 Score=82.44 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=40.9
Q ss_pred CcccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhhc--ccceeeeec
Q 009671 49 DYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEG--QSRHRLSLN 95 (529)
Q Consensus 49 ~~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~~--~~~~~~~l~ 95 (529)
..|+.||+||+.+||+||+++|+++++.|||+|+.++. .+|+++...
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~r 51 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLR 51 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHS
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhc
Confidence 35789999999999999999999999999999999854 568776554
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.08 E-value=2.5e-07 Score=80.85 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=15.7
Q ss_pred CCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 399 CVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 399 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
+++|++|++++|.++......+. .+++|+.|++.+++
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCcCCeeCHHHhh-cCCCCCEEEeCCCC
Confidence 34455555555444332111111 34455555555544
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.04 E-value=2.2e-06 Score=73.74 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=6.9
Q ss_pred CCcCCEEEeccCC
Q 009671 399 CVALKKLCIKSCP 411 (529)
Q Consensus 399 ~~~L~~L~l~~~~ 411 (529)
+++|+.|++++|+
T Consensus 123 l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 123 LTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcccCEEEecCCC
Confidence 4455555555554
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.98 E-value=1e-06 Score=76.91 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=39.0
Q ss_pred cCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCC
Q 009671 347 CCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPN 426 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 426 (529)
.+++|+.|++++|.++......+ ..+++|++|+++++. ++..... ....+++|+.|+|++|.++......+ ..+++
T Consensus 52 ~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~-~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~ 127 (193)
T 2wfh_A 52 NYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPR-TFDGLKSLRLLSLHGNDISVVPEGAF-NDLSA 127 (193)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECCSSCCCBCCTTTT-TTCTT
T ss_pred cccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHH-HhCCCCCCCEEECCCCCCCeeChhhh-hcCcc
Confidence 34445555555544443222222 344555555555542 2211100 11235566666666666543211112 24566
Q ss_pred ccEEEeccCC
Q 009671 427 LVKVKVKKCR 436 (529)
Q Consensus 427 L~~L~l~~c~ 436 (529)
|+.|++.+++
T Consensus 128 L~~L~L~~N~ 137 (193)
T 2wfh_A 128 LSHLAIGANP 137 (193)
T ss_dssp CCEEECCSSC
T ss_pred ccEEEeCCCC
Confidence 7777766655
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.96 E-value=2.9e-06 Score=72.93 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=44.5
Q ss_pred CccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCc
Q 009671 348 CPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNL 427 (529)
Q Consensus 348 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L 427 (529)
+++|++|++++|.++......+ ..+++|++|+++++. ++...- .....+++|+.|++++|.++.... .....+++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L 126 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVF-DKLTKLTILYLHENK-LQSLPN-GVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSL 126 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTC
T ss_pred cccccEEECCCCcceEeChhHc-cCCCccCEEECCCCC-ccccCH-HHhhCCcccCEEECcCCcceEeCH-HHhcCCccc
Confidence 4455555555554442221111 345566666665553 221110 111246778888888877653221 222357788
Q ss_pred cEEEeccCC
Q 009671 428 VKVKVKKCR 436 (529)
Q Consensus 428 ~~L~l~~c~ 436 (529)
+.|++.+++
T Consensus 127 ~~L~l~~N~ 135 (177)
T 2o6r_A 127 QKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 888888887
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.96 E-value=1.6e-06 Score=75.67 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=7.3
Q ss_pred CCcCCEEEeccCC
Q 009671 399 CVALKKLCIKSCP 411 (529)
Q Consensus 399 ~~~L~~L~l~~~~ 411 (529)
+++|+.|++++|+
T Consensus 125 l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 125 LNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECTTCC
T ss_pred CCCCCEEEeCCCC
Confidence 4555555555555
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.90 E-value=2.1e-06 Score=91.08 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=36.7
Q ss_pred CCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcC
Q 009671 320 CKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKC 399 (529)
Q Consensus 320 ~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~ 399 (529)
+++|+.|+|++|....+.. ....+++|+.|+|++|.++. +..-+..+++|++|+|++|. ++. +..-...+
T Consensus 246 l~~L~~L~Ls~N~l~~lp~-----~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~--lp~~~~~l 315 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPA-----EIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFDNM-VTT--LPWEFGNL 315 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCG-----GGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECCSSC-CCC--CCSSTTSC
T ss_pred CCCCCEEEeeCCcCcccCh-----hhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECCCCC-CCc--cChhhhcC
Confidence 4555555555544332221 11234555555555555441 11111344555555555542 221 11112234
Q ss_pred CcCCEEEeccCCCCH
Q 009671 400 VALKKLCIKSCPVSD 414 (529)
Q Consensus 400 ~~L~~L~l~~~~i~~ 414 (529)
++|+.|+|++|.++.
T Consensus 316 ~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCCCEECTTSCCCS
T ss_pred CCccEEeCCCCccCC
Confidence 555555555555443
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.76 E-value=4.5e-06 Score=88.51 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=78.9
Q ss_pred HHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHH
Q 009671 265 LVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAV 344 (529)
Q Consensus 265 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~ 344 (529)
.....++.|+.|+|++|.+..... .+..+++|+.|+|+++ .++ .+......+++|+.|+|++|....+.. .
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~-----~ 288 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISA-NIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLTSLPA-----E 288 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCG-GGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCSSCCS-----S
T ss_pred hhhccCCCCcEEECCCCCCCCCCh-hhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCCccCh-----h
Confidence 345567889999999997764332 2447899999999988 344 222223457999999999987654432 1
Q ss_pred HhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 009671 345 AKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGD 389 (529)
Q Consensus 345 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 389 (529)
...+++|++|+|++|.++...- . +..+++|+.|+|+++. ++.
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~-~-~~~l~~L~~L~L~~N~-l~~ 330 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPW-E-FGNLCNLQFLGVEGNP-LEK 330 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCS-S-TTSCTTCCCEECTTSC-CCS
T ss_pred hcCCCCCCEEECCCCCCCccCh-h-hhcCCCccEEeCCCCc-cCC
Confidence 3467899999999998864321 2 3788999999999886 443
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.66 E-value=8.3e-06 Score=79.87 Aligned_cols=237 Identities=15% Similarity=0.208 Sum_probs=121.7
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc--cChHHHHHHHhcCCCCCEEecCCccCCCccccccccCC
Q 009671 139 KCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT--FGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGP 216 (529)
Q Consensus 139 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 216 (529)
.+..++.+.+.+ .++..+-.++. .| +|+.+.+..+- +....+. .+ +|+.+.+.. .+...+
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~-~~-~L~~i~l~~~i~~I~~~aF~----~~-~L~~i~lp~--~l~~I~------- 172 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFR-NS-QIAKVVLNEGLKSIGDMAFF----NS-TVQEIVFPS--TLEQLK------- 172 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTT-TC-CCSEEECCTTCCEECTTTTT----TC-CCCEEECCT--TCCEEC-------
T ss_pred ecCCccEEEECC--ccCEehHhhcc-cC-CccEEEeCCCccEECHHhcC----CC-CceEEEeCC--CccEeh-------
Confidence 467788888865 34333322222 34 68888876552 3332222 23 577777653 121110
Q ss_pred CcccCccchhhccccccCCcchhhhhcCCCCCeEeccccC--CCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcC
Q 009671 217 GVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCS--GDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNC 294 (529)
Q Consensus 217 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 294 (529)
...+.+|++|+.+++..+. .+....+ .+.+|+.+.+..+ ++..+...+..|
T Consensus 173 ---------------------~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~-l~~I~~~aF~~~ 225 (401)
T 4fdw_A 173 ---------------------EDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT-LKEIGSQAFLKT 225 (401)
T ss_dssp ---------------------SSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT-CCEECTTTTTTC
T ss_pred ---------------------HHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc-hheehhhHhhCC
Confidence 1234566777777775421 1111111 1356777777643 443344455667
Q ss_pred CCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCc-----HHHHHHH
Q 009671 295 LDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPT-----RVSLEVL 369 (529)
Q Consensus 295 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~-----~~~l~~l 369 (529)
++|+.+.+... +...+-..+.. .+|+.+.+... +..+.... ...|++|+.+.+.++.+. ..+-.+
T Consensus 226 ~~L~~l~l~~~--l~~I~~~aF~~--~~L~~i~lp~~-i~~I~~~a----F~~c~~L~~l~l~~~~~~~~~~~~I~~~a- 295 (401)
T 4fdw_A 226 SQLKTIEIPEN--VSTIGQEAFRE--SGITTVKLPNG-VTNIASRA----FYYCPELAEVTTYGSTFNDDPEAMIHPYC- 295 (401)
T ss_dssp TTCCCEECCTT--CCEECTTTTTT--CCCSEEEEETT-CCEECTTT----TTTCTTCCEEEEESSCCCCCTTCEECTTT-
T ss_pred CCCCEEecCCC--ccCcccccccc--CCccEEEeCCC-ccEEChhH----hhCCCCCCEEEeCCccccCCcccEECHHH-
Confidence 78888887642 22222112221 56888887532 33444332 246788888888766443 111112
Q ss_pred HhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccCC
Q 009671 370 ASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKCR 436 (529)
Q Consensus 370 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 436 (529)
+..|++|+.+.+... ++.-+-.. ..+|++|+.+.|..+ ++..+-.++. +| +|+.|.+.++.
T Consensus 296 F~~c~~L~~l~l~~~--i~~I~~~a-F~~c~~L~~l~lp~~-l~~I~~~aF~-~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 296 LEGCPKLARFEIPES--IRILGQGL-LGGNRKVTQLTIPAN-VTQINFSAFN-NT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCTTCCEECCCTT--CCEECTTT-TTTCCSCCEEEECTT-CCEECTTSSS-SS-CCCEEEECCSS
T ss_pred hhCCccCCeEEeCCc--eEEEhhhh-hcCCCCccEEEECcc-ccEEcHHhCC-CC-CCCEEEEcCCC
Confidence 267778888887642 22211111 234777888888654 2222222232 56 77887777654
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.61 E-value=5.3e-06 Score=81.26 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCceeEEEeeccCCccccCHHHHHHHHHcCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEEecCcc--cChHHHHHHH
Q 009671 111 FDVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT--FGAKGMNAVL 188 (529)
Q Consensus 111 ~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~~l~~~~ 188 (529)
+..++.+.+.- .-..+....+ ..| +|+.+.+.. .+...+-.++. .| +|+.+.+...- +.... +
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF----~~~-~L~~i~l~~--~i~~I~~~aF~-~~-~L~~i~lp~~l~~I~~~a----F 176 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAF----RNS-QIAKVVLNE--GLKSIGDMAFF-NS-TVQEIVFPSTLEQLKEDI----F 176 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTT----TTC-CCSEEECCT--TCCEECTTTTT-TC-CCCEEECCTTCCEECSST----T
T ss_pred cCCccEEEECC--ccCEehHhhc----ccC-CccEEEeCC--CccEECHHhcC-CC-CceEEEeCCCccEehHHH----h
Confidence 35566666641 1122333333 234 799999975 34433323332 23 69999998632 33333 4
Q ss_pred hcCCCCCEEecCCccCCCccccccccCCCcccCccchhhccccccCCcchhhhhcCCCCCeEeccc
Q 009671 189 DNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFR 254 (529)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 254 (529)
..|++|+.+++... .+........ .+.+|+.+.+... ....-...+.+|++|+.+.+..
T Consensus 177 ~~c~~L~~l~l~~n-~l~~I~~~aF-----~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 177 YYCYNLKKADLSKT-KITKLPASTF-----VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTCTTCCEEECTTS-CCSEECTTTT-----TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred hCcccCCeeecCCC-cceEechhhE-----eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 47999999999753 2222111100 2345555555422 1111123445566666666643
No 152
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.56 E-value=2.6e-05 Score=78.10 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=42.7
Q ss_pred CCCCcccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhhc---ccceeeee
Q 009671 46 TAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEG---QSRHRLSL 94 (529)
Q Consensus 46 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~~---~~~~~~~l 94 (529)
-..|++..||+||+.+||+||+++|++++++|||+|++++. .+|+.+.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLI 61 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45699999999999999999999999999999999999743 46776654
No 153
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.54 E-value=2.5e-05 Score=77.65 Aligned_cols=47 Identities=28% Similarity=0.542 Sum_probs=41.5
Q ss_pred CCCcccCCCHH----HHHHHHccCChhhhhHHHHHhHHHHHhh--cccceeee
Q 009671 47 AYDYISNLPDE----CLACIFQSLSSGDRKRCSLVCRRWLRIE--GQSRHRLS 93 (529)
Q Consensus 47 ~~~~~~~LP~e----il~~If~~L~~~d~~~~~~Vck~W~~~~--~~~~~~~~ 93 (529)
..|++..||+| |+.+||+||+++|++++++|||+|++++ ..+|+.+.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~ 59 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI 59 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 46999999999 9999999999999999999999999974 45677654
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.36 E-value=6.8e-05 Score=63.72 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=14.8
Q ss_pred ccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 273 LVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 273 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
|+.|++++|.++......+..+++|+.|+|+++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 64 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCC
Confidence 444444444444333333344445555555444
No 155
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.35 E-value=9.1e-05 Score=73.75 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=41.4
Q ss_pred CCCCcccCCCHHHHHHHHccCChhhhhHHHHHhHHHHHhhcc--cceeee
Q 009671 46 TAYDYISNLPDECLACIFQSLSSGDRKRCSLVCRRWLRIEGQ--SRHRLS 93 (529)
Q Consensus 46 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~Vck~W~~~~~~--~~~~~~ 93 (529)
...|++..||+|++.+||+||+++|++++++|||+|+.++.. +|+.+.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 456899999999999999999999999999999999998543 466543
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.35 E-value=3.5e-05 Score=65.56 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=44.2
Q ss_pred CCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCC
Q 009671 321 KLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGSDTVGDVEISCIAAKCV 400 (529)
Q Consensus 321 ~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~ 400 (529)
++|+.|+|++|....+.... ...+++|++|+|++|.++......+ ..+++|++|+++++. ++...- .....++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVF-DKLTQLTQLSLNDNQ-LKSIPR-GAFDNLK 102 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTTCT
T ss_pred CCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhc-cCCCCCCEEECCCCc-cCEeCH-HHhcCCC
Confidence 34555555554433332211 1235566666666665553322222 456667777776663 221110 1123467
Q ss_pred cCCEEEeccCCCC
Q 009671 401 ALKKLCIKSCPVS 413 (529)
Q Consensus 401 ~L~~L~l~~~~i~ 413 (529)
+|+.|+|++|+++
T Consensus 103 ~L~~L~L~~N~~~ 115 (170)
T 3g39_A 103 SLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEeCCCCCC
Confidence 7888888888754
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.34 E-value=7.5e-05 Score=63.74 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=15.3
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCC
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKT 305 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~ 305 (529)
+|+.|++++|.++......+..+++|+.|+|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN 67 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 3444555444444333333344445555555444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.27 E-value=0.0003 Score=64.04 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=14.6
Q ss_pred cCCEEEeccCCCCH------HHHHHHHhcCCCccEEE
Q 009671 401 ALKKLCIKSCPVSD------HGMEALAGGCPNLVKVK 431 (529)
Q Consensus 401 ~L~~L~l~~~~i~~------~~l~~l~~~~~~L~~L~ 431 (529)
+|++|+|++|++.. .-...+...+|+|+.|+
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 45555555555442 11223333455665554
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.05 E-value=3.6e-05 Score=75.44 Aligned_cols=80 Identities=25% Similarity=0.444 Sum_probs=36.7
Q ss_pred cCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCC-CCCChhHHHHHHHcCCcCCEEEeccCCCCHHHHHHHHhcCC
Q 009671 347 CCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGS-DTVGDVEISCIAAKCVALKKLCIKSCPVSDHGMEALAGGCP 425 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~ 425 (529)
.|.+|+.+.+..+ +...+-.++ ..|.+|+.++|... ..+.+.. ..+|.+|+.+.+..+ ++.-+-.++ .+|.
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF-~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~-l~~I~~~aF-~~C~ 366 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAF-ESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS-LRKIGANAF-QGCI 366 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTT-TTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT-CCEECTTTB-TTCT
T ss_pred ccccccccccccc-cceechhhh-cCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc-ccEehHHHh-hCCC
Confidence 4566666666433 111111112 45666666666432 1122211 124666666666544 222111222 2566
Q ss_pred CccEEEecc
Q 009671 426 NLVKVKVKK 434 (529)
Q Consensus 426 ~L~~L~l~~ 434 (529)
+|+.+++..
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 666666643
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.04 E-value=0.00054 Score=62.31 Aligned_cols=91 Identities=19% Similarity=0.221 Sum_probs=60.5
Q ss_pred HHHHHhcCCCCCEEEccCCCCCChhHHHHHHHcCCcCCEEEeccCCCCHH-HHHHHHhcCCCccEEEeccCCCCCH----
Q 009671 366 LEVLASNCQNLERLALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDH-GMEALAGGCPNLVKVKVKKCRAVTT---- 440 (529)
Q Consensus 366 l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~~i~~---- 440 (529)
+..+..++++|++|+|+++.--+-.++..+...+++|+.|+|++|.+++. .+..+. .+ +|+.|+|.+++ ++.
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~ 238 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNS-LCDTFRD 238 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSS
T ss_pred HHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCc-CccccCc
Confidence 34444678889999998875322234445556799999999999998764 233332 23 89999999998 663
Q ss_pred --HHHHHHHhcCCcEEEEeccC
Q 009671 441 --EGADWLRARREYVVVNLDSG 460 (529)
Q Consensus 441 --~~~~~l~~~~~~l~l~l~~~ 460 (529)
.-...+...+|.+.. +|+.
T Consensus 239 ~~~y~~~il~~~P~L~~-LDg~ 259 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLR-LDGH 259 (267)
T ss_dssp HHHHHHHHHHHCTTCCE-ESSC
T ss_pred chhHHHHHHHHCcccCe-ECCc
Confidence 233455567777755 5543
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.77 E-value=0.00043 Score=58.97 Aligned_cols=14 Identities=21% Similarity=0.003 Sum_probs=7.6
Q ss_pred hcCCCCCeEecccc
Q 009671 242 IGAKNLRTLKLFRC 255 (529)
Q Consensus 242 ~~~~~L~~L~l~~~ 255 (529)
..+++|+.|+++++
T Consensus 54 ~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 54 DHLVNLQQLYFNSN 67 (174)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCCC
Confidence 44555555555553
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.65 E-value=0.00063 Score=65.18 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=50.7
Q ss_pred hhcCCccEEEeec-cccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHh
Q 009671 268 DRVTSLVEIHLER-IQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAK 346 (529)
Q Consensus 268 ~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~ 346 (529)
..+++|+.|+|++ |.++......+..+++|+.|+|+++ .++...- .....+++|+.|+|++|....+....+ .
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~----~ 101 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKTV----Q 101 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSSCCSCCCSTTT----C
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCCCccceeCHHHc----c
Confidence 3445678888875 7776665555667777777777776 3333211 122346777777777765544433211 1
Q ss_pred cCccccceEeecccCc
Q 009671 347 CCPNLQELVLIGVNPT 362 (529)
Q Consensus 347 ~~~~L~~L~L~~~~i~ 362 (529)
.+ .|+.|+|.+|.+.
T Consensus 102 ~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GL-SLQELVLSGNPLH 116 (347)
T ss_dssp SC-CCCEEECCSSCCC
T ss_pred cC-CceEEEeeCCCcc
Confidence 12 2667777666554
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.16 E-value=0.0021 Score=61.51 Aligned_cols=89 Identities=16% Similarity=0.064 Sum_probs=60.2
Q ss_pred hhcCCCCCeEeccccCCCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhC
Q 009671 241 IIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERC 320 (529)
Q Consensus 241 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 320 (529)
+..+++|+.|+|+++..+... .......+++|+.|+|++|.++......+..+++|+.|+|+++ .++...- .+...+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~~ 103 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW-KTVQGL 103 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCS-TTTCSC
T ss_pred CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCH-HHcccC
Confidence 567789999999863333211 1112346788999999999888877667788999999999987 3332211 111222
Q ss_pred CCCcEEEecCccc
Q 009671 321 KLLRKLHIDGWKA 333 (529)
Q Consensus 321 ~~L~~L~L~~~~~ 333 (529)
.|+.|+|.+|..
T Consensus 104 -~L~~l~l~~N~~ 115 (347)
T 2ifg_A 104 -SLQELVLSGNPL 115 (347)
T ss_dssp -CCCEEECCSSCC
T ss_pred -CceEEEeeCCCc
Confidence 399999988753
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.02 E-value=0.0013 Score=64.33 Aligned_cols=104 Identities=21% Similarity=0.377 Sum_probs=56.1
Q ss_pred hCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCC-CCCChhHHHHHHH
Q 009671 319 RCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGS-DTVGDVEISCIAA 397 (529)
Q Consensus 319 ~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~l~~ 397 (529)
.|..|+.+.+... ...+.... ...|++|+.+.+... +...+-.++ .+|.+|+.+.|... ..+.+.. ..
T Consensus 263 ~c~~L~~i~lp~~-~~~I~~~a----F~~c~~L~~i~l~~~-i~~I~~~aF-~~c~~L~~i~lp~~v~~I~~~a----F~ 331 (394)
T 4gt6_A 263 SCAYLASVKMPDS-VVSIGTGA----FMNCPALQDIEFSSR-ITELPESVF-AGCISLKSIDIPEGITQILDDA----FA 331 (394)
T ss_dssp TCSSCCEEECCTT-CCEECTTT----TTTCTTCCEEECCTT-CCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TT
T ss_pred ecccccEEecccc-cceecCcc----cccccccccccCCCc-ccccCceee-cCCCCcCEEEeCCcccEehHhH----hh
Confidence 4667777777542 12333222 235677777777532 221111222 67788888888543 2233322 23
Q ss_pred cCCcCCEEEeccCCCCHHHHHHHHhcCCCccEEEeccC
Q 009671 398 KCVALKKLCIKSCPVSDHGMEALAGGCPNLVKVKVKKC 435 (529)
Q Consensus 398 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c 435 (529)
+|.+|+.+.|..+ ++.-+-.++. +|.+|+.+++.+.
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~-~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFS-NCTALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGT-TCTTCCEEEESSC
T ss_pred CCCCCCEEEECcc-cCEEhHhHhh-CCCCCCEEEECCc
Confidence 5788888888654 2222222333 6888888888764
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.37 E-value=0.0059 Score=59.50 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=60.5
Q ss_pred HhCCCCcEEEecCcccCccChHHHHHHHhcCccccceEeecccCcHHHHHHHHhcCCCCCEEEccCC-CCCChhHHHHHH
Q 009671 318 ERCKLLRKLHIDGWKANRIGDEGLIAVAKCCPNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGS-DTVGDVEISCIA 396 (529)
Q Consensus 318 ~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~l~ 396 (529)
..|.+|+.+.+... +..+.+.. ...|.+|+.++|..+ ++..+-.++ .+|.+|+.+.+... ..+.+.. .
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~a----F 362 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEA----FESCTSLVSIDLPYL-VEEIGKRSF-RGCTSLSNINFPLSLRKIGANA----F 362 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTT----TTTCTTCCEECCCTT-CCEECTTTT-TTCTTCCEECCCTTCCEECTTT----B
T ss_pred cccccccccccccc-cceechhh----hcCCCCCCEEEeCCc-ccEEhHHhc-cCCCCCCEEEECccccEehHHH----h
Confidence 34788999988643 34455433 346889999998643 332222233 78999999999653 2233322 2
Q ss_pred HcCCcCCEEEeccCCCCHHHHHHHHhcCCCccEE
Q 009671 397 AKCVALKKLCIKSCPVSDHGMEALAGGCPNLVKV 430 (529)
Q Consensus 397 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L 430 (529)
.+|++|+.+++..+- +..+ .. ..+|.+|+.+
T Consensus 363 ~~C~~L~~i~lp~~~-~~~~-~~-F~~c~~L~~I 393 (394)
T 4fs7_A 363 QGCINLKKVELPKRL-EQYR-YD-FEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEEEEEGGG-GGGG-GG-BCTTCEEEEE
T ss_pred hCCCCCCEEEECCCC-EEhh-he-ecCCCCCcEE
Confidence 468999999997652 1111 12 3467777765
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.83 E-value=0.49 Score=45.73 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=59.2
Q ss_pred cCCCCCEEEecCcc--cChHHHHHHHhcCCCCCEEecCC-ccCCCccccccccCCCcccCccchhhccccccCCcchhhh
Q 009671 165 NCKGLKKLSCGSCT--FGAKGMNAVLDNCSTLEELSVKR-LRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLI 241 (529)
Q Consensus 165 ~~~~L~~L~L~~~~--~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 241 (529)
.|.+|+.+.+.... +.... +..|+.|+.+.+.. ...+....+. .+.+|+.+.+..... .--...+
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~aF~-------~c~~L~~i~lp~~v~-~I~~~aF 330 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSRITELPESVFA-------GCISLKSIDIPEGIT-QILDDAF 330 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTT-------TCTTCCEEECCTTCC-EECTTTT
T ss_pred ecccccEEecccccceecCcc----cccccccccccCCCcccccCceeec-------CCCCcCEEEeCCccc-EehHhHh
Confidence 46666666665443 22222 23566677666643 1112222222 455666665543211 1112345
Q ss_pred hcCCCCCeEeccccC-CCchHHHHHHHhhcCCccEEEeeccccChHHHHHhhcCCCCCeEEecC
Q 009671 242 IGAKNLRTLKLFRCS-GDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVK 304 (529)
Q Consensus 242 ~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~ 304 (529)
.+|.+|+.+.+.... .+.+ .....|.+|+.+++.++.. ....+..+.+|+.+.+..
T Consensus 331 ~~C~~L~~i~ip~sv~~I~~----~aF~~C~~L~~i~~~~~~~---~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 331 AGCEQLERIAIPSSVTKIPE----SAFSNCTALNNIEYSGSRS---QWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCTTCCEEEECTTCCBCCG----GGGTTCTTCCEEEESSCHH---HHHTCBCCCCC-------
T ss_pred hCCCCCCEEEECcccCEEhH----hHhhCCCCCCEEEECCcee---ehhhhhccCCCCEEEeCC
Confidence 778888888885421 2222 1235678888888877532 223455678888887753
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=78.26 E-value=0.44 Score=45.70 Aligned_cols=128 Identities=20% Similarity=0.287 Sum_probs=72.1
Q ss_pred hcCCccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHHHHHHhCCCCcEEEecCcccCccChHHHHHHHhcC
Q 009671 269 RVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKCC 348 (529)
Q Consensus 269 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~i~~~~l~~~~~~~ 348 (529)
.+.+|+.+.+... +...+...+..+..|+.+.+... ++..+-. ....|.+|+.+.+... ...+... ....|
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c 285 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSF-LLQNCTALKTLNFYAK-VKTVPYL----LCSGC 285 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTT-TTTTCTTCCEEEECCC-CSEECTT----TTTTC
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCcc-ccceeehhcccccccc-ceecccc----ccccc
Confidence 4456777776543 22222233446778888887543 2222111 1234678888887542 2333332 22467
Q ss_pred ccccceEeecccCcHHHHHHHHhcCCCCCEEEccCC-CCCChhHHHHHHHcCCcCCEEEeccC
Q 009671 349 PNLQELVLIGVNPTRVSLEVLASNCQNLERLALCGS-DTVGDVEISCIAAKCVALKKLCIKSC 410 (529)
Q Consensus 349 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~ 410 (529)
.+|+.+.+.++.+...+-.++ .+|.+|+.+.|... ..+.+.. ..+|.+|+.+.+..+
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVF-MDCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPKS 343 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCTT
T ss_pred cccccccccccccceehhhhh-cCCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECCc
Confidence 888888887765544333333 67888998888532 2233322 235888888888654
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=75.22 E-value=1.9 Score=33.95 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=26.6
Q ss_pred CccEEEeeccccChHHHHHhhcCCCCCeEEecCCCCCChhhHH
Q 009671 272 SLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLA 314 (529)
Q Consensus 272 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~L~~~~~~~~~~l~ 314 (529)
+|+.|+|++|.++......+..+++|+.|+|.+++..-+-.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence 4677777777666555555566677777777776544343333
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=74.30 E-value=1.7 Score=41.44 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=16.7
Q ss_pred cCCCCCEEEecCcc--cChHHHHHHHhcCCCCCEEecC
Q 009671 165 NCKGLKKLSCGSCT--FGAKGMNAVLDNCSTLEELSVK 200 (529)
Q Consensus 165 ~~~~L~~L~L~~~~--~~~~~l~~~~~~~~~L~~L~l~ 200 (529)
.+.+|+.+.+...- +.... ...+..|+.+.+.
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp 248 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIP 248 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEEC
T ss_pred cccccceeeeccceeEEcccc----ccCCccceEEEcC
Confidence 45667766665432 22221 2356667777664
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=62.74 E-value=3.2 Score=32.64 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=7.3
Q ss_pred CCcEEEecCcccCcc
Q 009671 322 LLRKLHIDGWKANRI 336 (529)
Q Consensus 322 ~L~~L~L~~~~~~~i 336 (529)
+|+.|+|++|.+..+
T Consensus 32 ~l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL 46 (130)
T ss_dssp TCSEEECTTSCCSSC
T ss_pred CCCEEECCCCcCCcc
Confidence 455555555444333
Done!