BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009672
(529 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera]
gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/529 (76%), Positives = 459/529 (86%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGGL++LKGL KLESLNI C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK L+IS SKVTD G+AYLKGL KL LLN+EGC
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGL--------------------------HKLALLNMEGC 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL+SLS L SL LNLNR LSDDGCE F++ +L+VLNLGFN++TD CLVHLKG
Sbjct: 290 PVTAACLESLSDLPSLLSLNLNRSMLSDDGCENFARQENLRVLNLGFNDLTDACLVHLKG 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLESLNLDSC I DEGL NLTGL +LKCLELSDT+VGS+GLRHLSGL NLESINLSFT
Sbjct: 350 LTNLESLNLDSCRICDEGLANLTGLRHLKCLELSDTEVGSNGLRHLSGLANLESINLSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D LRKL+ LSSLKSLNLDARQITD GLAALTSLTGLTHLDLFGARITDSG +YLRN
Sbjct: 410 AVTDSGLRKLSALSSLKSLNLDARQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRN 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LELISGLT LVSL+VSN
Sbjct: 470 FKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRIT+AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPNLVSFRPE
Sbjct: 530 SRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPNLVSFRPE 578
>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
Length = 578
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/529 (74%), Positives = 451/529 (85%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL G+ PGVND W+DVI+SQGSS+L
Sbjct: 76 MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL++L++CSNLQSL+ NFC ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM FA L+NL++LDLE+C IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGC
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGL--------------------------HKLSLLNLEGC 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL +LSALG+L YLNL+RC ++DDG E+FS +G+LK+LNLGFN+ITDECLVHLKG
Sbjct: 290 PVTAACLYTLSALGALQYLNLSRCHITDDGSEQFSGLGALKILNLGFNDITDECLVHLKG 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLESLNLDSC I D+GLVNL L LKCLELSDT VGS+GLRHLSGL NLE +NLSFT
Sbjct: 350 LTNLESLNLDSCRIEDDGLVNLKALHRLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+KL+GLSSLKSLNLD RQITD GLA+LT L GLTHLDLFGARITDSG YLRN
Sbjct: 410 VVTDIGLKKLSGLSSLKSLNLDTRQITDIGLASLTGLVGLTHLDLFGARITDSGTNYLRN 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+IKDLSSL +LNLSQN NLTDK+LELISGLTGLVSLN+SN
Sbjct: 470 FKNLQSLEICGGGLTDAGVKNIKDLSSLMVLNLSQNGNLTDKSLELISGLTGLVSLNISN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRITSAGLRHLK LKNL+ LTLE+C+V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 530 SRITSAGLRHLKTLKNLKQLTLEACRVSASDIKKLQSTDLPNLVSFRPE 578
>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Vitis vinifera]
gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/529 (72%), Positives = 442/529 (83%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+LK LQ+SCS +TD GI+YLKGL KL LL++EGC
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLC--------------------------KLMLLDVEGC 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VT +CLDSLSAL +L YLNLNRC LSD GCEKFS + +LKVLN+GFN ITD CLVHLKG
Sbjct: 290 HVTTSCLDSLSALVALSYLNLNRCGLSDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKG 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLESLNLDSC I DEGL NLTGL LKCLELSDT+VGS+GL HLSGLT LES+NLSFT
Sbjct: 350 LTNLESLNLDSCSIEDEGLANLTGLSLLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+KL GL+SLKSLNLDARQITD GLAA+TSLTGLTHLDLFGARI+D+G LR+
Sbjct: 410 LVTDSGLKKLCGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDAGTNCLRH 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL++LEICGGGLTDAGVK+IK L+SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSN
Sbjct: 470 FKNLQTLEICGGGLTDAGVKNIKGLASLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRIT+ GL+HLKPLKNL SL+LESCKVTA++I++LQS LPNLVSFRPE
Sbjct: 530 SRITNNGLQHLKPLKNLLSLSLESCKVTASEIRKLQSTALPNLVSFRPE 578
>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]
Length = 577
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/528 (75%), Positives = 439/528 (83%), Gaps = 26/528 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+LKSL+IS SKVTD GI++LKGL QKL LLNLEGC
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGL--------------------------QKLALLNLEGC 288
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACLDSL+ L +L LNLNRC LSD+GC+K S++ +LKVLNLGFN ITD CLVHLKG
Sbjct: 289 LVTAACLDSLAELPALSNLNLNRCNLSDNGCKKISRLENLKVLNLGFNVITDACLVHLKG 348
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGLVNL GL L CLELSDT+VGS+GL HLSGL++L+ INLSFT
Sbjct: 349 LTKLESLNLDSCKIGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFT 408
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
ISD SLRKL+GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G YL+
Sbjct: 409 MISDSSLRKLSGLSSLKSLNLDAYQITDAGLANLTSLTGLTDLDLFGARITDFGTNYLKK 468
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNLRSLEICGG LTDAGVK+IK+LSSL LNLSQN NLTDKTLELISGLTGLVSLNVSN
Sbjct: 469 FKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSN 528
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528
SRIT+AGL+HLK LKNLRSLTLESCKVTANDIK+L+S LPNLVSFRP
Sbjct: 529 SRITNAGLQHLKTLKNLRSLTLESCKVTANDIKKLKSIYLPNLVSFRP 576
>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa]
gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]
Length = 576
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/529 (70%), Positives = 433/529 (81%), Gaps = 27/529 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL LKDCSNLQ++ N+C ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQIS + VTD G++YL+GL QKL +LNLEGC
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGL--------------------------QKLIMLNLEGC 288
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+T ACLDS+SAL +L YLNLNRC L DDGC+KFS + +LKVL+L FN++TD CLVHLKG
Sbjct: 289 NITTACLDSISALATLAYLNLNRCHLPDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKG 348
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLESLNLDSC IGDEG+ NL GL LK LELSDT VGSSGLRHLSG+ +LE++NLSFT
Sbjct: 349 LKNLESLNLDSCRIGDEGIANLAGL-PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFT 407
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++DG LRKL+GL+SL+SLNLDARQITD GL ALTSLTGLT LDLFGARITDSG L+
Sbjct: 408 LVTDGGLRKLSGLTSLRSLNLDARQITDAGLTALTSLTGLTRLDLFGARITDSGTNCLKY 467
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+IKDL LT+LNLSQN NLTDKTLELISGLT LVSLNVSN
Sbjct: 468 FKNLKSLEICGGGLTDAGVKNIKDLVHLTVLNLSQNTNLTDKTLELISGLTELVSLNVSN 527
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
S IT+ GLR+LKPLKNLR+LTLESCKVTA++IK+LQS +LPNL S RPE
Sbjct: 528 SLITNEGLRYLKPLKNLRALTLESCKVTASEIKKLQSTELPNLASVRPE 576
>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 585
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/537 (71%), Positives = 429/537 (79%), Gaps = 34/537 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+L SL+ISCSKVTD GI++L+GL QKL LLNLEGC
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGL--------------------------QKLALLNLEGC 288
Query: 241 PVTAACLDSLSA--------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
VT+ACLDSLS L +L LNLNRC +SD GCE+FS++ LKVLNLGFN+I D
Sbjct: 289 LVTSACLDSLSGCHEHTIPKLPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGD 348
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
CL H+KGLT LESLNLDSC IGDEGL NL G L CLELSDT+VG+ GL HLSGL++L
Sbjct: 349 RCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSL 408
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
E INLSFT +SD LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD
Sbjct: 409 EKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITD 468
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
G YL+ FKNLRSLEIC GGLTDAGVK+IK+LSSL LNLSQN NLTDKT+ELI+GLT
Sbjct: 469 VGTNYLKKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTA 528
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
LVSLN+SN+RITSAGL+HLK LKNLRSLTLESCKVTANDIK+ + LPNLVSFRPE
Sbjct: 529 LVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585
>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]
Length = 580
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/529 (71%), Positives = 446/529 (84%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78 MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL LK CSNLQ+L +N+C +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+L LQ+S +TDSGI+YLKGL KL +LNLEGC
Sbjct: 258 DLNELQLSNCNITDSGISYLKGL--------------------------HKLRMLNLEGC 291
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTA+CL S+SAL +L YLNLNRC LSD+GC+KFS + +LKVL+LGFNEITD CL++LKG
Sbjct: 292 NVTASCLQSISALVALAYLNLNRCSLSDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKG 351
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT+LESLNLDSC IGDEGL NL GL +LK LELSDT+VGS+GLRHLSGL NLES+NLSFT
Sbjct: 352 LTSLESLNLDSCKIGDEGLANLAGLTHLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFT 411
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D SL++L+GL+SLKSLNLDARQITD GLAA+TSLTGLTHLDLFGARI+DSGA +L+
Sbjct: 412 LVTDSSLKRLSGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDSGANHLKY 471
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+IKDL LT LN+SQNCNLT+K+LELISGLT LVSLNVSN
Sbjct: 472 FKNLQSLEICGGGLTDAGVKNIKDLVCLTWLNISQNCNLTNKSLELISGLTALVSLNVSN 531
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRIT+ GL+HLKPLKNLRSLTLESCKVTA++I++LQS LPNLVSFRPE
Sbjct: 532 SRITNEGLQHLKPLKNLRSLTLESCKVTASEIRKLQSDALPNLVSFRPE 580
>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]
Length = 577
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/529 (71%), Positives = 424/529 (80%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+L SL+ISCSKVTD GI++L+GL QKL LLNLEGC
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGL--------------------------QKLALLNLEGC 288
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VT+ACLDSLS L +L LNLNRC +S GCE+FS++ LKVLNLGFN+I D CL H+KG
Sbjct: 289 LVTSACLDSLSELPALSNLNLNRCNISGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKG 348
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGL NL G L CLELSDT+VG+ GL HLSGL++LE INLSFT
Sbjct: 349 LTKLESLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFT 408
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+SD LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G YL+
Sbjct: 409 VVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKK 468
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNLR LEIC GGLTDAGVK+IK+LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+SN
Sbjct: 469 FKNLRPLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSN 528
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
+RIT AGL+HLK LKNLR LTLESCKVT NDIK+ + LPNLVSFRPE
Sbjct: 529 TRITFAGLQHLKTLKNLRFLTLESCKVTVNDIKKFKLIHLPNLVSFRPE 577
>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 578
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/529 (72%), Positives = 449/529 (84%), Gaps = 27/529 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+N+ KLDLE+C IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
L+SLQI CS++TD GI+YLKGL+ +++ + EGC
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNL--------------------------EGCR 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACLD+L+AL L +LNLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHL+G
Sbjct: 290 HVTAACLDTLTALTGLMFLNLNRCNFSDSGCEKFSDLINLKILNLGMNSITNSCLVHLRG 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGLV+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT
Sbjct: 350 LTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN
Sbjct: 410 VVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L+SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSN
Sbjct: 470 LKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR++S+GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 530 SRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 578
>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 573
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/531 (71%), Positives = 423/531 (79%), Gaps = 34/531 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
SVDLS SDVTD GL +L+DC +L SL+ N+C QI D L SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L +L SL+ISCSKVTD GI++L+GL QKL LLNLE
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGL--------------------------QKLALLNLE 282
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
GC VT+ACLDSLS L +L LNLNRC +SD GCE+FS++ LKVLNLGFN+I D CL H+
Sbjct: 283 GCLVTSACLDSLSELPALSNLNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHM 342
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
KGLT LESLNLDSC IGDEGL NL G L CLELSDT+VG+ GL HLSGL++LE INLS
Sbjct: 343 KGLTKLESLNLDSCKIGDEGLENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLS 402
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
FT +SD LRKL GLSSLKSLNLDA QITD GLA LTSLTGLT LDLFGARITD G YL
Sbjct: 403 FTVVSDSGLRKLCGLSSLKSLNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYL 462
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
+ FKNLRSLEIC GGLTDAGVK+IK+LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+
Sbjct: 463 KKFKNLRSLEICSGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNL 522
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+RITSAGL+HLK LKNLRSLTLESCKVTANDIK+ + LPNLVSFRPE
Sbjct: 523 SNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFKLIHLPNLVSFRPE 573
>gi|30684506|ref|NP_563980.2| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|23297087|gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
gi|332191234|gb|AEE29355.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 585
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/529 (72%), Positives = 445/529 (84%), Gaps = 27/529 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
L+SLQI CSK+TD GI+YLKGL+ +++ + EGC
Sbjct: 263 LRSLQICCSKITDIGISYLKGLNKLNLLNL--------------------------EGCR 296
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACLD+L+AL L YLNLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKG
Sbjct: 297 HVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKG 356
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGLV+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT
Sbjct: 357 LTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFT 416
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN
Sbjct: 417 VVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 476
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L+SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSN
Sbjct: 477 LKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSN 536
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR++S+GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 537 SRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 585
>gi|13507547|gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
Length = 585
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/529 (72%), Positives = 444/529 (83%), Gaps = 27/529 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
L+ LQI CSK+TD GI+YLKGL+ +++ + EGC
Sbjct: 263 LRRLQICCSKITDIGISYLKGLNKLNLLNL--------------------------EGCR 296
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACLD+L+AL L YLNLNRC SD GCEKFS + +LK+LNLG N IT+ CLVHLKG
Sbjct: 297 HVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKG 356
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGLV+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT
Sbjct: 357 LTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFT 416
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN
Sbjct: 417 VVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 476
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L+SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSN
Sbjct: 477 LKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSN 536
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR++S+GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 537 SRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 585
>gi|356562920|ref|XP_003549716.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 580
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/529 (67%), Positives = 418/529 (79%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLT++SLEAFRDCALQD+ LG+Y GV+D WMDVI+SQG SLL
Sbjct: 78 ILPRDISQQIFNELVDSHCLTQLSLEAFRDCALQDIDLGEYVGVSDDWMDVISSQGLSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+SGS VTD+GL LKDCSNLQ+L NFC Q S+ GL+H+ GLSNLTSLS R+++ +
Sbjct: 138 SVDVSGSQVTDNGLRFLKDCSNLQALTLNFCDQFSEYGLKHISGLSNLTSLSIRKSSTVK 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+ DSDMK +S L
Sbjct: 198 PDGMRAFSNLFNLEKLDLERCSDIHGGFVHLKGLKKLEYLNIGCCKCVMDSDMKSISELI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQIS S +TD GI YL+GL + LT LN+EGC
Sbjct: 258 NLKELQISNSSITDIGITYLRGLKM--------------------------LTTLNVEGC 291
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+TAACL+ + AL SL LNLNRC LSDDG EK S + +LK L+L FN ITD CLVHLKG
Sbjct: 292 NITAACLEFIHALASLACLNLNRCGLSDDGFEKISGLKNLKRLSLAFNRITDACLVHLKG 351
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLE LNLD C IGD+GL NLTGL LK L LSDT +G+SGLRH+SGL LE +NLSFT
Sbjct: 352 LTNLEYLNLDYCRIGDDGLANLTGLTLLKSLVLSDTDIGNSGLRHISGLKKLEDLNLSFT 411
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L++L+GL+ LKSLNLDARQITD GLA LTSL+GL LDLFGARI+D+G +LR+
Sbjct: 412 TVTDHGLKRLSGLTQLKSLNLDARQITDAGLANLTSLSGLIALDLFGARISDNGTTFLRS 471
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FK L+SLEICGGGLTDAGVK+I+++ SLT LNLSQNCNLTDKTLELISG+T L SLNVSN
Sbjct: 472 FKILQSLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELISGMTALRSLNVSN 531
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRIT+ GLR+LKPLKNLR+LTLESCKVTA++IK+LQS DLPNL+SFRPE
Sbjct: 532 SRITNEGLRYLKPLKNLRTLTLESCKVTASEIKKLQSTDLPNLISFRPE 580
>gi|356548547|ref|XP_003542662.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 578
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/529 (67%), Positives = 419/529 (79%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLTEVSLEAFRDCALQD+ LG+Y GVND WMDVI+SQG SLL
Sbjct: 76 ILPRDISQQIFNELVDSHCLTEVSLEAFRDCALQDIDLGEYVGVNDDWMDVISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD++GS VTD GL LKDCS+LQ+L ++C Q S+ GL+H+ GLSNLTSLS R+++++
Sbjct: 136 SVDVAGSQVTDDGLRLLKDCSSLQALTLSYCDQFSEYGLKHISGLSNLTSLSIRKSSSVK 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+TDSD+K +S L
Sbjct: 196 PDGMRAFSNLFNLEKLDLERCSEIHGGFVHLKGLKKLEYLNIGCCKCVTDSDIKSISELI 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQIS S +TD GI YL+GL +KLT LN+EGC
Sbjct: 256 NLKELQISNSSITDIGITYLRGL--------------------------EKLTTLNVEGC 289
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+TAACL+ + AL SL LNLNRC LSDDG EK S + +LK L+L FN ITD CLVHLK
Sbjct: 290 NITAACLEFIHALTSLACLNLNRCGLSDDGFEKISGLKNLKRLSLAFNRITDACLVHLKD 349
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLE LNLDSC IGD GL NLTGL LK L LSDT +G+SGLR++SGL LE +N+SFT
Sbjct: 350 LTNLEYLNLDSCRIGDGGLANLTGLTLLKSLVLSDTDIGNSGLRYISGLKKLEDLNVSFT 409
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L++L+GL+ LKSLNLDARQITD GLA LTSL+GL LDLFGARI+D+G +LR+
Sbjct: 410 TVTDNGLKRLSGLTQLKSLNLDARQITDAGLANLTSLSGLITLDLFGARISDNGTTFLRS 469
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAGVK+I+++ SLT LNLSQNCNLTDKTLELISG+T L SLNVSN
Sbjct: 470 FKNLQSLEICGGGLTDAGVKNIREIVSLTQLNLSQNCNLTDKTLELISGMTALRSLNVSN 529
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRIT+ GLRHLKPLKNLR+LTLESCKVTA+ IK+LQS DLPNL+SFRPE
Sbjct: 530 SRITNEGLRHLKPLKNLRTLTLESCKVTASGIKKLQSTDLPNLISFRPE 578
>gi|357164542|ref|XP_003580088.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Brachypodium distachyon]
Length = 580
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/529 (67%), Positives = 424/529 (80%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV LTE SLEAFRDCALQD+CL +YPGV D WM+V+ASQG SLL
Sbjct: 78 MLPRDLSQQIFNELVEWSYLTEESLEAFRDCALQDICLEEYPGVKDAWMEVVASQGQSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTDSGL LKDCSN+QSL N+C QIS+ GL+ L GLSNLTSLS ++ A+T
Sbjct: 138 SVDISCSDVTDSGLDVLKDCSNMQSLACNYCDQISEHGLKTLSGLSNLTSLSLKKCAAVT 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGLV+LKGL KLE+LN+++CNCITDSDMK LS LT
Sbjct: 198 AEGAKAFADLVNLVNLDLERCPKIHGGLVHLKGLRKLETLNMRYCNCITDSDMKYLSDLT 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+SC K++D G++YLKGLS KL LNLEGC
Sbjct: 258 NLRELQLSCCKISDIGVSYLKGLS--------------------------KLAHLNLEGC 291
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACL+++S L SL LNLNRC + D+GCE + LKVLNLGFN ITD CLVHLK
Sbjct: 292 AVTAACLEAISGLASLILLNLNRCGIYDEGCENLEGLVKLKVLNLGFNHITDACLVHLKE 351
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L +LE LNLDSC IGDEGL++L GL L+ LELSDT+VGS+GLRHLSGL NL+S+NLSFT
Sbjct: 352 LVSLECLNLDSCKIGDEGLLHLKGLLQLRSLELSDTEVGSNGLRHLSGLRNLQSMNLSFT 411
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+K+AGL+SLKSLNLD RQITD GLAAL LTGLTHLDLFGARITDSG LR
Sbjct: 412 LVTDIGLKKVAGLNSLKSLNLDNRQITDNGLAALAGLTGLTHLDLFGARITDSGTNCLRY 471
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FK L+SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTD+TLELISGLT LVSLN+SN
Sbjct: 472 FKELQSLELCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDRTLELISGLTALVSLNLSN 531
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
+R+++AGL HLK L+NLRSL+L+SCKVTA++IK++Q LPNL+S RPE
Sbjct: 532 TRVSNAGLHHLKLLQNLRSLSLDSCKVTASEIKKIQLASLPNLISVRPE 580
>gi|255583092|ref|XP_002532313.1| protein binding protein, putative [Ricinus communis]
gi|223527982|gb|EEF30065.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/523 (70%), Positives = 424/523 (81%), Gaps = 27/523 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S CLT+ +LEAFRDCALQD+ LG+YPGV D WMD+++SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHCLTDATLEAFRDCALQDILLGEYPGVKDSWMDIVSSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL L+ CS+LQ++ N C IS+ GL+H+ GL NLTSLSF+R NA+T
Sbjct: 135 SVDLSDSDVTDTGLALLQACSSLQTMILNRCDCISECGLKHISGLKNLTSLSFKRCNAVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ F+ L+NL KLDLERC +IHGGL +LKGL+KLESLNI+ C CI D DMK LS +T
Sbjct: 195 AEGMRGFSSLVNLEKLDLERCPQIHGGLAHLKGLLKLESLNIRCCKCIEDMDMKALSDIT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQIS S VTD G++YLKGL QKL +LNLEGC
Sbjct: 255 NLKELQISNSNVTDLGVSYLKGL--------------------------QKLIMLNLEGC 288
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VT ACLDS+SAL +L YLNLNRC LSDDGC KFS + +LKVL+LGFN ITD CLVHLKG
Sbjct: 289 NVTTACLDSISALVALTYLNLNRCNLSDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKG 348
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLE+LNLDSC IGDEGL NLTGL LK LELSDT+VGS+GLRHLSGLT LE++NLSFT
Sbjct: 349 LMNLENLNLDSCNIGDEGLANLTGL-PLKSLELSDTEVGSNGLRHLSGLTLLENLNLSFT 407
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D LR+L+GL SL+SLNLDARQITD GLAALT LTGL HLDLFGARI+DSG YL+
Sbjct: 408 LVTDSGLRRLSGLLSLRSLNLDARQITDAGLAALTRLTGLIHLDLFGARISDSGTKYLQY 467
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTD GVK+IKDL LT+LNLSQN NLTDKTLELISGLT LVSLNVSN
Sbjct: 468 FKNLQSLEICGGGLTDDGVKNIKDLVHLTVLNLSQNSNLTDKTLELISGLTELVSLNVSN 527
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
S IT+ GL +LKPLKNLRSL+LESCKVTA++I +LQS LPNL
Sbjct: 528 SLITNEGLHYLKPLKNLRSLSLESCKVTASEISKLQSTALPNL 570
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 152/372 (40%), Gaps = 82/372 (22%)
Query: 18 RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTDSGLI 75
+C+ ++ ++A D L++L Q N + V +G L+ ++L G +VT + L
Sbjct: 240 KCIEDMDMKALSDITNLKEL---QISNSNVTDLGVSYLKGLQKLIMLNLEGCNVTTACLD 296
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+ L L+ N C +SD G GL NL LS NN IT + GL+NL
Sbjct: 297 SISALVALTYLNLNRC-NLSDDGCSKFSGLKNLKVLSLGFNN-ITDACLVHLKGLMNLEN 354
Query: 136 LDLERCTRIHGGLVNL-----------------------KGLMKLESLNIKW-------- 164
L+L+ C GL NL GL LE+LN+ +
Sbjct: 355 LNLDSCNIGDEGLANLTGLPLKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDSGL 414
Query: 165 ---------------CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
ITD+ + L+ LT L L + ++++DSG YL+ +
Sbjct: 415 RRLSGLLSLRSLNLDARQITDAGLAALTRLTGLIHLDLFGARISDSGTKYLQYFKNLQSL 474
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
I + ++ L LT+LNL + +T L+ +S L L LN++
Sbjct: 475 EICGGGLTDDGVKNI--KDLVHLTVLNLSQNSNLTDKTLELISGLTELVSLNVSN----- 527
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLC 326
+ IT+E L +LK L NL SL+L+SC + + L T L
Sbjct: 528 -------------------SLITNEGLHYLKPLKNLRSLSLESCKVTASEISKLQSTALP 568
Query: 327 NLKCLELSDTQV 338
NLK ++ T V
Sbjct: 569 NLKGRDMLGTGV 580
>gi|116310796|emb|CAH67587.1| OSIGBa0112M24.4 [Oryza sativa Indica Group]
gi|218195159|gb|EEC77586.1| hypothetical protein OsI_16540 [Oryza sativa Indica Group]
Length = 581
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/529 (66%), Positives = 417/529 (78%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+SC K++D G++YL+GLS KL LNLEGC
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLS--------------------------KLAHLNLEGC 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACL+ +S L SL LNL+RC + D+GCE + LKVLNLGFN ITD CLVHLK
Sbjct: 293 AVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKE 352
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLE LNLDSC IGDEGL +L GL L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT
Sbjct: 353 LINLECLNLDSCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFT 412
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+K++GL+SL+SLNLD RQITD GLAALT LTGLTHLDLFGARITD+G L+
Sbjct: 413 LVTDIGLKKISGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKY 472
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDK+LELISGLT LVSLNVSN
Sbjct: 473 FKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISGLTALVSLNVSN 532
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR++++GL HLKPL+NLRSL+LESCKVTA +IK+LQ LPNLVS RPE
Sbjct: 533 SRVSNSGLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581
>gi|357478391|ref|XP_003609481.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355510536|gb|AES91678.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 576
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/529 (67%), Positives = 418/529 (79%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQ IFNELV S CLTE SL AFRDCALQD+ LG+Y GVND WMDVIASQG SLL
Sbjct: 74 ILPRDISQLIFNELVESHCLTETSLNAFRDCALQDVYLGEYLGVNDGWMDVIASQGPSLL 133
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+VD+SGS+VTD GL LKDC NLQ+L N+C Q S+ GL+HL GLSNLTSLS R++ A+T
Sbjct: 134 AVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQFSEHGLKHLSGLSNLTSLSIRKSCAVT 193
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L+NL KLDLERC+ IHGG V+ KGL KLESLNI C C+TDSDMK +SG
Sbjct: 194 PDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLESLNIGCCKCVTDSDMKAISGFI 253
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQIS S +TD GI+YL+GL QKL+ LN+EGC
Sbjct: 254 NLKELQISNSSITDLGISYLRGL--------------------------QKLSTLNVEGC 287
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+TAAC + +SAL +L LNLNRC LSDDG EKFS + LK L+L FN+ITD CLVHLKG
Sbjct: 288 SITAACFEYISALAALACLNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKG 347
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LE LNLDSC IGDEGLVNLTGL LK L LSDT+VG+SG+R++SGL LE +NLSFT
Sbjct: 348 LTKLEYLNLDSCQIGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFT 407
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L++L GL++LKSLNLDARQITD GLA LTSL+GL LDLFGARITDSG YLR+
Sbjct: 408 SVTDNGLKRLLGLTNLKSLNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRS 467
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGG LTDAGVK+I+++ SLT LNLSQNC LTDKTLELISG+T L SLNVSN
Sbjct: 468 FKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSN 527
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR+T+ GLR+LKPLKNLR+L+LESCKV A DIK+L S DLPNL+SFRPE
Sbjct: 528 SRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHSTDLPNLISFRPE 576
>gi|115459280|ref|NP_001053240.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|113564811|dbj|BAF15154.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|215678755|dbj|BAG95192.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708842|dbj|BAG94111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629150|gb|EEE61282.1| hypothetical protein OsJ_15365 [Oryza sativa Japonica Group]
Length = 581
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/529 (66%), Positives = 416/529 (78%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+SC K++D G++YL+GLS KL LNLEGC
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLS--------------------------KLAHLNLEGC 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACL+ +S L SL LNL+RC + D+GCE + LKVLNLGFN ITD CLVHLK
Sbjct: 293 AVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKE 352
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLE LNLDSC IGDEGL +L GL L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT
Sbjct: 353 LINLECLNLDSCKIGDEGLAHLKGLLKLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFT 412
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+K++GL+SL+SLNLD RQITD GLAALT LTGLTHLDLFGARITD+G L+
Sbjct: 413 LVTDIGLKKISGLNSLRSLNLDNRQITDNGLAALTCLTGLTHLDLFGARITDAGTNCLKY 472
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDK+LELIS LT LVSLNVSN
Sbjct: 473 FKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNVSN 532
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR++++GL HLKPL+NLRSL+LESCKVTA +IK+LQ LPNLVS RPE
Sbjct: 533 SRVSNSGLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 581
>gi|356550632|ref|XP_003543689.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 565
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/538 (68%), Positives = 418/538 (77%), Gaps = 36/538 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG----------VNDKWMDV 51
LP D+SQ+IFN +VYS LT SL+ FRD ALQD+CLG+Y V+D WMDV
Sbjct: 54 LPPDLSQRIFNNMVYSSYLTPASLQPFRDSALQDICLGEYEYANGGGAAAAIVDDAWMDV 113
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I+SQGSSLL +DLS SDVTD GL L C+N+ SL+ N C QISD GLE + GLSNL SL
Sbjct: 114 ISSQGSSLLHLDLSASDVTDHGLTFLGHCTNIISLNLNHCHQISDHGLECISGLSNLASL 173
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
SFRRN AI+AQG+ F+GLINLVKLDLERC IHG LV+++GL LESLN+ WCNC+ D
Sbjct: 174 SFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLESLNLNWCNCLVDV 233
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
DMKPLS LTNLKSL+IS +KVTD GI++LKGL QK
Sbjct: 234 DMKPLSVLTNLKSLEISFNKVTDFGISFLKGL--------------------------QK 267
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L LLNLEGC VT ACLDSL L +L LNL+RC LS+DGCEKFS++ +LKVLNLGFN+IT
Sbjct: 268 LNLLNLEGCQVTTACLDSLEELPALSNLNLSRCNLSNDGCEKFSRLENLKVLNLGFNDIT 327
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
D CL HLKGLT L+SLNLDSC I DEGLV+L G L CLELSDT +GS+GL HLSGL+N
Sbjct: 328 DACLAHLKGLTKLKSLNLDSCRIEDEGLVHLAGHQQLNCLELSDTGIGSNGLHHLSGLSN 387
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
LE INLSFT ++D L KL GLSSLKSLNLDARQ+TDTGLA+LTSLTGLT LDLFGARIT
Sbjct: 388 LEKINLSFTFVNDSGLSKLCGLSSLKSLNLDARQVTDTGLASLTSLTGLTELDLFGARIT 447
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
D G YL+ FKNLR LEICGG LTD GVK+IK+LSSL LNLSQNCNLTD TLELISGLT
Sbjct: 448 DFGTNYLKCFKNLRLLEICGGELTDDGVKNIKELSSLKSLNLSQNCNLTDTTLELISGLT 507
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
L+SLNVSNS IT+AGL+HLK LKNLRSL+LESCKVTAN IK+LQS DLPNLVSFRP+
Sbjct: 508 DLISLNVSNSGITNAGLQHLKTLKNLRSLSLESCKVTANGIKKLQSTDLPNLVSFRPQ 565
>gi|115447277|ref|NP_001047418.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|47497632|dbj|BAD19701.1| leucine-rich repeat-like protein [Oryza sativa Japonica Group]
gi|113536949|dbj|BAF09332.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|125582867|gb|EAZ23798.1| hypothetical protein OsJ_07510 [Oryza sativa Japonica Group]
gi|215704406|dbj|BAG93840.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/529 (65%), Positives = 420/529 (79%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE FRDCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQ++C ++TD G++YL+GLS KLT LNLEGC
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLS--------------------------KLTQLNLEGC 293
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL+++S L SL LNL+RC + +GCE F + LKVLNLGFN ITD+CL HLK
Sbjct: 294 PVTAACLEAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKE 353
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLESLNLDSC +GDEGL++L GL LK LELSDT+VGSSGL+HLSGL NLESINLSFT
Sbjct: 354 LINLESLNLDSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFT 413
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D ++K++ L+SLKS+NLD RQITD GLAALTSLTGLTHLDLFGARITD G + R
Sbjct: 414 LVTDTGMKKISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRF 473
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL SLE+CGG +TDAGVK+IKDL +L LNLSQN NLTDKTLELISGLT LVSLNVSN
Sbjct: 474 FKNLESLEVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSN 533
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
+R+++AGLRHLK L+NLRSL+L+SC+VT +++K+LQ+ LPNL+S RPE
Sbjct: 534 TRVSNAGLRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582
>gi|125540271|gb|EAY86666.1| hypothetical protein OsI_08050 [Oryza sativa Indica Group]
Length = 582
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/529 (65%), Positives = 419/529 (79%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE F DCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFWDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQ++C ++TD G++YL+GLS KLT LNLEGC
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLS--------------------------KLTQLNLEGC 293
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL+++S L SL LNL+RC + +GCE F + LKVLNLGFN ITD+CL HLK
Sbjct: 294 PVTAACLEAISGLASLVVLNLSRCGIYGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKE 353
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLESLNLDSC +GDEGL++L GL LK LELSDT+VGSSGL+HLSGL NLESINLSFT
Sbjct: 354 LINLESLNLDSCKVGDEGLLHLRGLMLLKSLELSDTEVGSSGLQHLSGLRNLESINLSFT 413
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D ++K++ L+SLKS+NLD RQITD GLAALTSLTGLTHLDLFGARITD G + R
Sbjct: 414 LVTDTGMKKISALNSLKSVNLDNRQITDVGLAALTSLTGLTHLDLFGARITDYGTSCFRF 473
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL SLE+CGG +TDAGVK+IKDL +L LNLSQN NLTDKTLELISGLT LVSLNVSN
Sbjct: 474 FKNLESLEVCGGLITDAGVKNIKDLKALKQLNLSQNVNLTDKTLELISGLTALVSLNVSN 533
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
+RI++AGLRHLK L+NLRSL+L+SC+VT +++K+LQ+ LPNL+S RPE
Sbjct: 534 TRISNAGLRHLKDLQNLRSLSLDSCRVTTSEVKKLQATVLPNLISVRPE 582
>gi|357150116|ref|XP_003575347.1| PREDICTED: F-box/LRR-repeat protein 14-like [Brachypodium
distachyon]
Length = 582
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/529 (65%), Positives = 417/529 (78%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQQ+FN+LV S CL E SLE FRDCAL D+CLG++PGV D WM+V+ASQ SLL
Sbjct: 80 VLPSDLSQQVFNQLVDSNCLKEASLETFRDCALHDICLGEFPGVKDAWMEVVASQRQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTDSGL L+DCSN+QSL N+C QIS+ GL L G SNLTSLSF+R++ +T
Sbjct: 140 SVDISCSEVTDSGLNLLRDCSNMQSLVCNYCDQISEHGLGVLSGFSNLTSLSFKRSDGVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ FA L+NLV LDLERC +IHGGLV+LKGL KLES+N+++CN ITDSD+K LS LT
Sbjct: 200 AEGMRVFANLVNLVNLDLERCLKIHGGLVHLKGLRKLESINMRYCNNITDSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQ+S ++TD G++YL+GLS KL LNLE C
Sbjct: 260 NLKELQLSSCRITDLGVSYLRGLS--------------------------KLIRLNLESC 293
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL +S L SL LNLNRC + D+GCE F + LKVLNLGFN ITD CLVHLK
Sbjct: 294 PVTAACLVDISGLASLMLLNLNRCGIYDEGCESFKDLKKLKVLNLGFNYITDACLVHLKE 353
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLE LNLDSC +GD GL++L GL LK LELSDT+VGS+GLRHLSGL L+ I+LSFT
Sbjct: 354 LINLEFLNLDSCKVGDAGLLHLKGLVLLKSLELSDTEVGSNGLRHLSGLRTLQRIDLSFT 413
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D ++K++ LSSLKS+NLD+R ITD GLAALT LTGLTHLDLFGARITD+GA+ R
Sbjct: 414 LVTDTGMKKISALSSLKSVNLDSRLITDVGLAALTGLTGLTHLDLFGARITDNGASCFRY 473
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL SLE CGG +TD GVK+IK+L +LTLLNLSQN NLTDKTLELISGLT LVSLNVSN
Sbjct: 474 FKNLESLEACGGSITDVGVKNIKELKALTLLNLSQNANLTDKTLELISGLTALVSLNVSN 533
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR+++AGLRHL L+NLRSLTL+SC+VTAN+I++LQ+ LPNL+SFRPE
Sbjct: 534 SRVSNAGLRHLNALQNLRSLTLDSCRVTANEIRKLQATALPNLISFRPE 582
>gi|326497793|dbj|BAJ98524.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 583
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/529 (65%), Positives = 415/529 (78%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLP DISQQIF+ELV S LTE SLE FRDCAL D+CLG+YPGV D WM+V+ASQ SLL
Sbjct: 81 MLPSDISQQIFDELVGSNRLTEESLETFRDCALHDICLGEYPGVTDAWMEVVASQRQSLL 140
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTD GL L DCS++QSL N+C ++S+ G+ L G SNLTSLSF+R++ +T
Sbjct: 141 SVDISCSEVTDGGLNFLSDCSSMQSLSCNYCDRVSEHGIGVLSGFSNLTSLSFKRSDGVT 200
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM FA L+NLV LDLE C +IHGGLV++KGL KLESLN+++CN ITDSD+K LS LT
Sbjct: 201 AEGMSVFADLVNLVNLDLECCLKIHGGLVHMKGLRKLESLNMRYCNYITDSDIKYLSDLT 260
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQ+S ++TD G++YL GLS KLT LNLE C
Sbjct: 261 NLKELQLSSCRITDLGVSYLTGLS--------------------------KLTHLNLESC 294
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL+++S L SL LNLNRC + D+GCE F + LKVLNLGFN ITD CLVHLKG
Sbjct: 295 PVTAACLEAISGLASLMLLNLNRCGIYDEGCESFEDLKKLKVLNLGFNHITDACLVHLKG 354
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLESLNLDSC IGDEGL++L GL LK LELSDT +GS+GL+HLSGL NL SINLSFT
Sbjct: 355 LINLESLNLDSCKIGDEGLLHLKGLVLLKSLELSDTAIGSNGLQHLSGLRNLHSINLSFT 414
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D ++K++ L+SLKS+NLD R ITD GLAAL LTGLTHLDLFGAR+TD G ++LR
Sbjct: 415 LVTDTGMKKISTLNSLKSVNLDNRLITDVGLAALIGLTGLTHLDLFGARVTDHGTSFLRY 474
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL SLE+CGG +TDAGVK+IKDL +LTLLNLSQN LTDKTLELISGLT LVSLNVSN
Sbjct: 475 FKNLESLEVCGGSITDAGVKNIKDLKALTLLNLSQNAKLTDKTLELISGLTALVSLNVSN 534
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR+++AG RHLK L+NLRSLTL+SC+VT N++K+L++ LPNL+S RPE
Sbjct: 535 SRVSNAGFRHLKALQNLRSLTLDSCRVTVNEMKKLRATALPNLISVRPE 583
>gi|242076388|ref|XP_002448130.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
gi|241939313|gb|EES12458.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
Length = 581
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/529 (66%), Positives = 417/529 (78%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDCALQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCALQDVCLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C +IS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDKISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGL++LKGL KLE LN+++CNCITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEKLNMRYCNCITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+S K++D G++YL+GL KL LNLEGC
Sbjct: 259 NLRELQLSSCKISDFGVSYLRGL--------------------------HKLGHLNLEGC 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACL+ +S L SL LNL+RC + D+GCE + LK LNLGFN IT CL+HLK
Sbjct: 293 SVTAACLEVISELASLVLLNLSRCGICDEGCENLEGLTKLKALNLGFNHITGACLIHLKD 352
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L +LE LNLDSC IGDEGL +L GL LK LELSDT+VGS+GLRHLSGL NL+SINLSFT
Sbjct: 353 LISLECLNLDSCKIGDEGLFHLKGLIQLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFT 412
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+K++GLSSLKSLNLD RQITDTGLA+LT+LTGLTHLDLFGARITDSG R
Sbjct: 413 LVTDIGLKKISGLSSLKSLNLDNRQITDTGLASLTNLTGLTHLDLFGARITDSGMNCFRF 472
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDKTLELISGLT LVSLNVSN
Sbjct: 473 FKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKTLELISGLTALVSLNVSN 532
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR++++GL HLKPL NLRSL+LESC+VTA++I +L+ LPNL+S RPE
Sbjct: 533 SRVSNSGLHHLKPLLNLRSLSLESCRVTASEIDKLRLVALPNLISVRPE 581
>gi|226501144|ref|NP_001141453.1| uncharacterized protein LOC100273563 [Zea mays]
gi|194704638|gb|ACF86403.1| unknown [Zea mays]
gi|414586493|tpg|DAA37064.1| TPA: regulatory subunit [Zea mays]
Length = 581
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 346/529 (65%), Positives = 415/529 (78%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGL--------------------------HKLGHLNLEGC 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTA CL+ +S L SL LNL+RC + D+GCE + LK L+LGFN+ITD CL+HLK
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKD 352
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLE LNLDSC IGDEGL +L GL LK LELSDT+VGS+GLRHLSGL NL+SINLSFT
Sbjct: 353 LVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFT 412
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+K++GLSSLKSLNLD RQITDTGLA+LT LTGLTHLDLFGARITDSG + R
Sbjct: 413 LVTDIGLKKISGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRF 472
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKN++SLE+CGG +TDAGVK+IKDL +LTLLNLSQN LTDKTLELISGLT LVSLNVSN
Sbjct: 473 FKNIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSN 532
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR++++GL HLKPL+NLRSL+LESC+VTA+++ +L+ LPNL+S RPE
Sbjct: 533 SRVSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 581
>gi|195647464|gb|ACG43200.1| regulatory subunit [Zea mays]
Length = 581
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 344/529 (65%), Positives = 413/529 (78%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDV DSG LKDCS++Q+L ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVIDSGFNLLKDCSSMQNLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGL--------------------------HKLGHLNLEGC 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTA CL+ +S L SL LNL+RC + D+GCE + LK L+LGFN+ITD CL+HLK
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKD 352
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLE LNLDSC IGDEGL +L GL LK LELSDT+VGS+GLRHLSGL NL+SINLSFT
Sbjct: 353 LVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFT 412
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D L+K++GLSSLKSLNLD RQITDTGLA+LT LTGLTHLDLFGARITDSG + R
Sbjct: 413 LVTDIGLKKISGLSSLKSLNLDNRQITDTGLASLTGLTGLTHLDLFGARITDSGMSCFRF 472
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKN++SLE+CGG +TDAGVK+IKDL +LTLLNLSQN LTDKTLELISGLT LVSLNVSN
Sbjct: 473 FKNIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSN 532
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR+++ GL HLKPL+NLRSL+LESC+VTA+++ +L+ LPNL+S RPE
Sbjct: 533 SRVSNLGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 581
>gi|255553315|ref|XP_002517700.1| F-box/LRR-repeat protein, putative [Ricinus communis]
gi|223543332|gb|EEF44864.1| F-box/LRR-repeat protein, putative [Ricinus communis]
Length = 529
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 371/529 (70%), Positives = 408/529 (77%), Gaps = 75/529 (14%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELVYS+ L + ++EAFRDCALQDL LG+ PGVND WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVYSQRLNDATIEAFRDCALQDLHLGECPGVNDSWMDVISSQGISLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTDS GL +L+ +NL +L+F + I+
Sbjct: 136 SVDLSGSDVTDS-------------------------GLAYLKDCTNLQALNFNYCDQIS 170
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L N+ L+KLESLNIKWCNCITD+DMK LSGL
Sbjct: 171 DPG------------------------LSNISDLLKLESLNIKWCNCITDADMKYLSGLV 206
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
LK LQISCSKVTD GI+YLKGL KL LLNLEGC
Sbjct: 207 KLKGLQISCSKVTDVGISYLKGL--------------------------HKLNLLNLEGC 240
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVT ACLDSLSAL +L YLNLNRC LSDDGCE FSK+G LKVLNLGFN+I+D CLVHLKG
Sbjct: 241 PVTVACLDSLSALAALLYLNLNRCHLSDDGCEAFSKLGRLKVLNLGFNDISDACLVHLKG 300
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLESLNLDSC I DEGL NLTGL +LKCL LSDT+VGSSGLRHLSGLTNLESINLSFT
Sbjct: 301 LTNLESLNLDSCRIDDEGLANLTGLRHLKCLVLSDTEVGSSGLRHLSGLTNLESINLSFT 360
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I+DG +RKL+GLSSLKSLNLDARQITD+GLAALT+LTGLTHLDLFGARITDSG YLRN
Sbjct: 361 MITDGGIRKLSGLSSLKSLNLDARQITDSGLAALTNLTGLTHLDLFGARITDSGTHYLRN 420
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLEICGGGLTDAG+++IKDLSSL+LLNLSQNCNLTDK+LELISGLTGLVSLNVSN
Sbjct: 421 FKNLQSLEICGGGLTDAGIRNIKDLSSLSLLNLSQNCNLTDKSLELISGLTGLVSLNVSN 480
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SRITSAGL+HLKPLKNL+SLTLESCKVTA DIK+LQS DLP LVSFRPE
Sbjct: 481 SRITSAGLQHLKPLKNLKSLTLESCKVTATDIKKLQSTDLPQLVSFRPE 529
>gi|226505324|ref|NP_001147302.1| regulatory subunit [Zea mays]
gi|195609698|gb|ACG26679.1| regulatory subunit [Zea mays]
gi|413937767|gb|AFW72318.1| regulatory subunit isoform 1 [Zea mays]
gi|413937768|gb|AFW72319.1| regulatory subunit isoform 2 [Zea mays]
Length = 582
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 340/529 (64%), Positives = 419/529 (79%), Gaps = 26/529 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQ+SC K+TD G++Y++GL QKLT LNLEGC
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGL--------------------------QKLTHLNLEGC 293
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL+++S L SL LNLNRC + DDGCE F + LKVLNLGFN ITD CLVHLK
Sbjct: 294 PVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKE 353
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L +LESLNLDSC IGD+GL +L GL L+ LELSDT+VG++GL+HLSGL NL+SINLSFT
Sbjct: 354 LISLESLNLDSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHLSGLRNLQSINLSFT 413
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D ++K++ L+SLKS+NLD RQITD GLAAL SLT LTHLDLFGA ITD+G R
Sbjct: 414 LVTDIGVKKISVLNSLKSVNLDNRQITDVGLAALISLTRLTHLDLFGACITDNGTNCFRY 473
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDKTLELISGLT L++LNVSN
Sbjct: 474 FKNLVSLEVCGGFVTDAGVKNIKDLKALTLLNLSQNANLTDKTLELISGLTALINLNVSN 533
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SR+++AGL+HL L NLRSL+L+S +VTAN++++L++ L NL+S RPE
Sbjct: 534 SRVSNAGLKHLNDLHNLRSLSLDSTRVTANEMRKLRATVLHNLISMRPE 582
>gi|302796665|ref|XP_002980094.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
gi|302822036|ref|XP_002992678.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300139524|gb|EFJ06263.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300152321|gb|EFJ18964.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
Length = 578
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 296/526 (56%), Positives = 371/526 (70%), Gaps = 26/526 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRD++Q+I NELV ++ L+ +AF DCA+QD+ LG YPGV+D WM+VI SQ LL+
Sbjct: 77 LPRDLTQKILNELVQTQALSRELFQAFEDCAIQDIYLGYYPGVDDSWMEVIGSQKFCLLA 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGS VTD G+ L+ C N++ + N C ISD L + G +NLTSLSF++N IT
Sbjct: 137 VDFSGSMVTDEGVQCLQICENVEIICMNECKYISDISLSYFTGFTNLTSLSFQKNKLITP 196
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ AGL NL LDLERC +IH GLV +KGL KLE LN+ WCNCI SDMK LSGLTN
Sbjct: 197 AGMRHLAGLPNLKHLDLERCPKIHDGLVYIKGLTKLEKLNLGWCNCIRSSDMKQLSGLTN 256
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L LQIS SKV D GI +LK L+KL +LN+EGCP
Sbjct: 257 LLELQISRSKVKDFGITFLK--------------------------DLKKLEVLNMEGCP 290
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
VT AC+D+++ L SL LNL C +SD GC K +G+LK LNL + ++D +V+LK L
Sbjct: 291 VTFACMDTIAGLTSLTTLNLKSCYISDFGCRKLEGLGNLKNLNLSYTNVSDAGMVYLKNL 350
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
+L+ LNLDSC IGD+G+ N L NLK L+LSD+ +G+ L L+GL+ LES+N+S T
Sbjct: 351 KSLQFLNLDSCKIGDQGVQNFKNLVNLKSLDLSDSLIGNHALNFLTGLSKLESLNISSTM 410
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
++D L K++GL+SLKSLN+D+RQITDTGL ALTSLT LTHLDLF ARITD G LR+F
Sbjct: 411 VTDMGLHKISGLTSLKSLNIDSRQITDTGLMALTSLTNLTHLDLFSARITDYGIGSLRHF 470
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
K L+SLE+CGGG+TD GVK +KDL+ LT LNLSQN LTD+ LE +SGLT LVSLNV NS
Sbjct: 471 KKLQSLEVCGGGITDVGVKSLKDLTDLTYLNLSQNGQLTDQALEALSGLTKLVSLNVGNS 530
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
+T+AGL+HL PLKNL SL L+SCKVT I++LQ+ LPNLV R
Sbjct: 531 SVTNAGLQHLLPLKNLTSLALQSCKVTLWAIQKLQASSLPNLVIVR 576
>gi|70663921|emb|CAE02935.3| OSJNBa0014K14.7 [Oryza sativa Japonica Group]
Length = 557
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 308/531 (58%), Positives = 374/531 (70%), Gaps = 54/531 (10%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+SC K++D G++YL+GLS KL LNLEGC
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLS--------------------------KLAHLNLEGC 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACL+ +S L SL LNL+RC + D+GCE + LKVLNLGFN ITD CLVHLK
Sbjct: 293 AVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKE 352
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NLE LNLDSC IGDEGL +L + H L++ N + +
Sbjct: 353 LINLECLNLDSCKIGDEGLAHLK-------------------VFH----KTLKAENHTIS 389
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGLTHLDLFGARITDSGAAYL 418
+ +KL + + + + + + L+S LTGLTHLDLFGARITD+G L
Sbjct: 390 LMQTSETKKLG---TFRHRSWEQWTSSSLWMVFLSSQGLTGLTHLDLFGARITDAGTNCL 446
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
+ FKNL+SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDK+LELIS LT LVSLNV
Sbjct: 447 KYFKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELISRLTALVSLNV 506
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SNSR++++GL HLKPL+NLRSL+LESCKVTA +IK+LQ LPNLVS RPE
Sbjct: 507 SNSRVSNSGLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVRPE 557
>gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity to F-box protein FBL2 from Homo sapiens
gb|AF176518 and contains multiple Leucine Rich PF|00560
repeats. ESTs gb|Z34572, gb|Z34571, gb|AI100681,
gb|AI100675, gb|AA395320, gb|AI100674, gb|AA651378,
gb|AA007067, gb|T46145, gb|T22090, gb|AI995016,
gb|H36884, gb|AI995066, gb|H37061, gb|T43537 come from
this gene [Arabidopsis thaliana]
Length = 568
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 328/538 (60%), Positives = 392/538 (72%), Gaps = 62/538 (11%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C +NL SL+F + I+
Sbjct: 143 VDFSGSDITDSGLVSLKGC-------------------------TNLESLNFNFCDQISN 177
Query: 122 QGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ +GL NL L R I G+ L L+ L+ L+++ C I D + L LT
Sbjct: 178 RGLVHLSGLSNLTSLSFRRNAAITAQGMRALSNLVNLKKLDLEKCPGI-DGGLVHLRALT 236
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
L+SL I C+ +TD+ + L GL+ +++ + EG
Sbjct: 237 KLESLNIKWCNCITDADMEPLSGLNKLNLLNL--------------------------EG 270
Query: 240 C-PVTAACLDSLS-------ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
C VTAACLD+L+ AL L YLNLNRC SD GCEKFS + +LK+LNLG N IT
Sbjct: 271 CRHVTAACLDTLTGLYRHPHALAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMNNIT 330
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+ LK LELSDT+VGS+GLRHLSGL+N
Sbjct: 331 NSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSN 390
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
LESINLSFT ++D LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARIT
Sbjct: 391 LESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARIT 450
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
DSG +LRN K L+SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLT
Sbjct: 451 DSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLT 510
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
GLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 511 GLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 568
>gi|168012567|ref|XP_001758973.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689672|gb|EDQ76042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 584
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 290/528 (54%), Positives = 374/528 (70%), Gaps = 28/528 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ Q + +ELV + L+ +LE F DC+LQD+ L YPGV D W+ VI SQG SLL+
Sbjct: 81 VPRDLIQLVLDELVRRQLLSPTTLELFSDCSLQDVLLPDYPGVEDSWLQVIGSQGESLLA 140
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+S S VTD GL L+ C+NLQSL N C I+D GL L GLSNLT+LS R NN ITA
Sbjct: 141 LDISSSTVTDEGLSFLESCTNLQSLILNACESIADEGLTSLSGLSNLTTLSLRSNNMITA 200
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDL+RC I GG V LKGL LE LN+ WC + +SD+K LSGL N
Sbjct: 201 AGMQNFTHLVSLKNLDLQRCPSIQGGFVYLKGLTTLEKLNVGWCIGVRNSDIKHLSGLVN 260
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
LK LQIS SKV+DSG+A L GL+ KL L++EGC
Sbjct: 261 LKELQISRSKVSDSGLASLTGLT--------------------------KLRSLSMEGCQ 294
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VT+ ++S+ L +++LN+N C L D G +K + +L+ LN+G+N +++ + LKG
Sbjct: 295 AVTSKGMESIGGLTGVWHLNVNSCFLHDSGFQKLEGLINLRTLNMGYNNVSNSGMGFLKG 354
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNLE LNLDSC IGD G+ N+ GL NLK L+LSDT++ S+GLR L+GL NLES+NLSFT
Sbjct: 355 LTNLERLNLDSCKIGDHGIENVKGLVNLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFT 414
Query: 361 -GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
GI+D LR +A ++SL SLNLD++QITDTGLAALT LTGL LDLFGARITD G A LR
Sbjct: 415 GGIADSGLRTIATITSLTSLNLDSKQITDTGLAALTGLTGLKTLDLFGARITDYGMACLR 474
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
+FK L++LE+CGGG+TDAGV+ IKDL+SLT LNLSQN LTD +L+ +SG+ LVSLN++
Sbjct: 475 HFKKLQTLELCGGGITDAGVRSIKDLTSLTSLNLSQNMRLTDNSLQYLSGMKNLVSLNLA 534
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
NSR+T+AGL+HL+PL NL SL L+ CKVT ++RLQ+ LP+L R
Sbjct: 535 NSRVTNAGLQHLRPLTNLTSLALQDCKVTLPAVERLQATYLPSLTVIR 582
>gi|168057635|ref|XP_001780819.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667754|gb|EDQ54376.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 564
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 286/523 (54%), Positives = 374/523 (71%), Gaps = 27/523 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ QQ+ N+LV + L+ V+LE F DCALQD+ L YPGV D W+D+I SQG SLL+
Sbjct: 62 VPRDLIQQVLNDLVRKQLLSPVTLELFSDCALQDVLLADYPGVEDFWLDIIGSQGESLLA 121
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SGS VTD GL L+ C+NLQ+L N C ISD GL L GLSNLT+LS R +N ITA
Sbjct: 122 LDISGSPVTDDGLACLQSCTNLQTLSLNSCDHISDEGLSVLSGLSNLTTLSLRSSNLITA 181
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDLERC IHGG V L+GL LE LN+ WC + ++D+ L+G+ N
Sbjct: 182 AGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLNVGWCIGVRNADITHLAGIVN 241
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
LK LQIS SKV DSG+A LKG++ L L++EGCP
Sbjct: 242 LKELQISRSKVNDSGVASLKGMT--------------------------NLRSLSMEGCP 275
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+TA + +++ L +L +LN+N C L D GC+K + +L+ LNLG+NE+TD +V LKGL
Sbjct: 276 ITAQSMKTIAGLTTLCHLNINSCYLPDSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGL 335
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT- 360
TNLE LNLDSC +GDEG+ ++ GL NL+ L+LSD++VG+ GLR LSGL LE +NLSFT
Sbjct: 336 TNLERLNLDSCKVGDEGIKHVKGLLNLRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTG 395
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
G++D L +A ++SL SLNLD++QITDTGLAALT LTGL +LDLFGA+ITD G A LR+
Sbjct: 396 GVTDIGLSTIATITSLTSLNLDSKQITDTGLAALTGLTGLKNLDLFGAKITDYGMARLRH 455
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
FKNL+SLE+CGGG+TD GV IKDL+ LT LNLS N LTD++L+ +SG+ LVSLNV+N
Sbjct: 456 FKNLQSLELCGGGITDVGVSSIKDLTLLTSLNLSHNLRLTDRSLQYLSGMENLVSLNVAN 515
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
S++T+AGL+HL+PL L SL L+ CKVT + L++ LPNL
Sbjct: 516 SKVTNAGLQHLRPLTKLTSLALQGCKVTRTAVDHLKATSLPNL 558
>gi|356519278|ref|XP_003528300.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 2 [Glycine max]
Length = 529
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 298/529 (56%), Positives = 352/529 (66%), Gaps = 76/529 (14%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+LKSL+IS SKVTD GI++LKG LQKL LLNLEGC
Sbjct: 255 SLKSLEISSSKVTDFGISFLKG--------------------------LQKLALLNLEGC 288
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTAACLDSL+ L +L LNLNRC LSD+GC+K S++ +LKVLNLGFN ITD CLVHLKG
Sbjct: 289 LVTAACLDSLAELPALSNLNLNRCNLSDNGCKKISRLENLKVLNLGFNVITDACLVHLKG 348
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT LESLNLDSC IGDEGLVNL GL L CLELSDT+VGS+GL HLSGLT L ++L
Sbjct: 349 LTKLESLNLDSCKIGDEGLVNLAGLEQLNCLELSDTEVGSNGLHHLSGLTGLTDLDLFGA 408
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-GARITDSGAAYLR 419
I+D L +L+SL + +TD G+ + L+ L L+L + +TD +
Sbjct: 409 RITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELIS 468
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
L SL + +T+AG++H+K L +L L L ++C +T
Sbjct: 469 GLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTL-ESCKVT------------------- 508
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528
ANDIK+L+S LPNLVSFRP
Sbjct: 509 -----------------------------ANDIKKLKSIYLPNLVSFRP 528
>gi|14423508|gb|AAK62436.1|AF386991_1 Unknown protein [Arabidopsis thaliana]
gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis thaliana]
Length = 332
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/358 (71%), Positives = 296/358 (82%), Gaps = 27/358 (7%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
M+PLS LTNL+SLQI CSK+TD GI+YLKGL+ +++ +
Sbjct: 1 MEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNL--------------------- 39
Query: 233 TLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
EGC VTAACLD+L+AL L YLNLNRC SD GCEKFS + +LK+LNLG N IT
Sbjct: 40 -----EGCRHVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMNNIT 94
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+ LK LELSDT+VGS+GLRHLSGL+N
Sbjct: 95 NSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSN 154
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
LESINLSFT ++D LRKL+GL+SL++LNLDAR +TD GL+ALTSLTGLTHLDLFGARIT
Sbjct: 155 LESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARIT 214
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
DSG +LRN K L+SLEICGGGLTD GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLT
Sbjct: 215 DSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLT 274
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
GLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 275 GLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 332
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 161/339 (47%), Gaps = 53/339 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ + S +TD G+ +LK + L L+ C ++ L+ L L+ L L+ R
Sbjct: 8 TNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRC 67
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + G + F+ LINL L+L + LV+LKGL KLESLN+ C I D + L
Sbjct: 68 N-FSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCR-IGDEGLVHL 125
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
SG+ LKSL++S ++V +G+ +L GLS L +N
Sbjct: 126 SGMLELKSLELSDTEVGSNGLRHLSGLS--------------------------NLESIN 159
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L VT + L LS L SL LNL+ ++D G + + L L+L ITD
Sbjct: 160 LSFTVVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTN 219
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVN-------------------------LTGLCNLKCL 331
HL+ L L+SL + G+ D G+ N ++GL L L
Sbjct: 220 HLRNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSL 279
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
+S+++V SSGLRHL L NL S+ L +S +RKL
Sbjct: 280 NVSNSRVSSSGLRHLKPLKNLRSLTLESCKLSANDIRKL 318
>gi|217074604|gb|ACJ85662.1| unknown [Medicago truncatula]
Length = 331
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/357 (66%), Positives = 278/357 (77%), Gaps = 26/357 (7%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
MK +SG NLK LQIS S +TD GI+YL+GL QKL
Sbjct: 1 MKAISGFINLKELQISNSSITDLGISYLRGL--------------------------QKL 34
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+ LN+EGC +TAAC + +SAL +L LNLNRC LSDDG EKFS + LK L+L FN+ITD
Sbjct: 35 STLNVEGCSITAACFEYISALAALACLNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITD 94
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
CLVHLKGLT LE LNLDSC IGDEGLVNLTGL LK L LSDT+VG+SG+R++SGL L
Sbjct: 95 ACLVHLKGLTKLEYLNLDSCQIGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKL 154
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
E +NLSFT ++D L++L GL++LKSLNLDARQITD GLA LTSL+GL LDLFGARITD
Sbjct: 155 EDLNLSFTSVTDNGLKRLLGLTNLKSLNLDARQITDAGLANLTSLSGLITLDLFGARITD 214
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
SG YLR+FKNL+SLEICGG LTDAGVK+I+++ SLT LNLSQNC LTDKTLELISG+T
Sbjct: 215 SGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTA 274
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
L SLNVSNSR+T+ GLR+LKPLKNLR+L+LESCKV A DIK+L S DLPNL+SFRPE
Sbjct: 275 LRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHSTDLPNLISFRPE 331
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 174/353 (49%), Gaps = 31/353 (8%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
++ + G NL L N++IT G+ GL L L++E C+ + L L
Sbjct: 1 MKAISGFINLKELQIS-NSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALA 59
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
LN+ C ++D + SGLT LK L ++ +K+TD+ + +LKGL+
Sbjct: 60 CLNLNRCG-LSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLT-------------- 104
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
KL LNL+ C + L +L+ L L L L+ ++ + G S +
Sbjct: 105 ------------KLEYLNLDSCQIGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLN 152
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L+ LNL F +TD L L GLTNL+SLNLD+ I D GL NLT L L L+L ++
Sbjct: 153 KLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLDARQITDAGLANLTSLSGLITLDLFGARI 212
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSL 397
SG +L NL+S+ + ++D ++ + + SL LNL ++TD L ++ +
Sbjct: 213 TDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGM 272
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSL 448
T L L++ +R+T+ G YL+ KNLR SLE C D H DL +L
Sbjct: 273 TALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHSTDLPNL 325
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 166/352 (47%), Gaps = 64/352 (18%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA---------- 121
SG I+LK+ S I+D G+ +LRGL L++L+ +ITA
Sbjct: 5 SGFINLKELQISNS-------SITDLGISYLRGLQKLSTLNV-EGCSITAACFEYISALA 56
Query: 122 --------------QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
G + F+GL L +L L LV+LKGL KLE LN+ C
Sbjct: 57 ALACLNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQ- 115
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I D + L+GLT LKSL +S ++V +SGI Y+ GL+
Sbjct: 116 IGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLN----------------------- 152
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
KL LNL VT L L L +L LNL+ Q++D G + + L L+L
Sbjct: 153 ---KLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLDARQITDAGLANLTSLSGLITLDLFG 209
Query: 288 NEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLR 344
ITD +L+ NL+SL + CG + D G+ N+ + +L L LS ++ L
Sbjct: 210 ARITDSGTTYLRSFKNLQSLEI--CGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLE 267
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+SG+T L S+N+S + +++ LR L L +L++L+L++ ++ + L S
Sbjct: 268 LISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHS 319
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 137/254 (53%), Gaps = 30/254 (11%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ L+ + +TD+ L+HLK + L+ L+ + C QI D GL +L GL+ L SL + T
Sbjct: 85 LSLAFNKITDACLVHLKGLTKLEYLNLDSC-QIGDEGLVNLTGLTLLKSLVL----SDTE 139
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G + G+ + GL KLE LN+ + + +TD+ +K L GLTN
Sbjct: 140 VG---------------------NSGIRYISGLNKLEDLNLSFTS-VTDNGLKRLLGLTN 177
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
LKSL + ++TD+G+A L LS + + + I +L S + L L + G
Sbjct: 178 LKSLNLDARQITDAGLANLTSLSGLITLDLFGARITD--SGTTYLRSFKNLQSLEICGGL 235
Query: 242 VTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+T A + ++ + SL LNL++ C+L+D E S + +L+ LN+ + +T+E L +LK
Sbjct: 236 LTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKP 295
Query: 301 LTNLESLNLDSCGI 314
L NL +L+L+SC +
Sbjct: 296 LKNLRTLSLESCKV 309
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LS + VTD+GL L +NL+SL+ + QI+D GL +L LS L +L IT
Sbjct: 157 LNLSFTSVTDNGLKRLLGLTNLKSLNLD-ARQITDAGLANLTSLSGLITLDLF-GARITD 214
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G NL L++ G+ N++ ++ L LN+ +TD ++ +SG+T
Sbjct: 215 SGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISGMTA 274
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L+SL +S S+VT+ G+ YLK L+ L L+LE C
Sbjct: 275 LRSLNVSNSRVTNEGLRYLK--------------------------PLKNLRTLSLESCK 308
Query: 242 VTAACLDSLSA 252
V AA + L +
Sbjct: 309 VNAADIKKLHS 319
>gi|414586494|tpg|DAA37065.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 400
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/348 (61%), Positives = 255/348 (73%), Gaps = 26/348 (7%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+S K++ G++YL+G L KL LNLEGC
Sbjct: 259 NLRELQLSSCKISAFGVSYLRG--------------------------LHKLGHLNLEGC 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VTA CL+ +S L SL LNL+RC + D+GCE + LK L+LGFN+ITD CL+HLK
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKD 352
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
L NLE LNLDSC IGDEGL +L GL LK LELSDT+VGS+GLRHLSG
Sbjct: 353 LVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHLSG 400
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 140/281 (49%), Gaps = 10/281 (3%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVF 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK S + S+ C I H
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISE----HGL 177
Query: 226 --LTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
L+ LT L+++ C VTA + + L +L L+L RC + G + L+
Sbjct: 178 KTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 283 LNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
LNL + N ITD + +L LTNL L L SC I G+ L GL L L L V +
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAV 297
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
L +S L +L +NLS GI D L GL+ LK+L+L QITD L L L L
Sbjct: 298 CLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLE 357
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
L+L +I D G +L+ L++LE+ + G++H+
Sbjct: 358 CLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHL 398
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 151/291 (51%), Gaps = 7/291 (2%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
LQ + L + G VT A ++ +++ G SL ++L+ ++D G S++ L +
Sbjct: 111 LQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDY 168
Query: 288 -NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
++I++ L L G +NL SL++ C + EG L NL L+L + GL H
Sbjct: 169 CDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIH 228
Query: 346 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L GL LE +NL + GI+D ++ L+ L++L+ L L + +I+ G++ L L L HL+
Sbjct: 229 LKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLN 288
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L G +T + +L L + G+ D G +++K L+ L L+L N +TD L
Sbjct: 289 LEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFN-QITDACL 347
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ L L LN+ + +I GL HLK L L++L L +V +N ++ L
Sbjct: 348 IHLKDLVNLECLNLDSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLRHL 398
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARIT 411
S++LS + ++D L SS++SL D QI++ GL L+ + LT L + A +T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 412 DSGAAYLRNFKNL------RSLEICGG-------------------GLTDAGVKHIKDLS 446
GA N NL R +I GG G+TD+ +K++ DL+
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
+L L LS +C ++ + + GL L LN+ +T+ L + L +L L L C
Sbjct: 259 NLRELQLS-SCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCG 317
Query: 507 VTANDIKRLQ 516
+ + L+
Sbjct: 318 ICDEGCENLK 327
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 359 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 416
+ G++D + +A SL S++L +TD+G L + + L + +I++ G
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178
Query: 417 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
L F NL SL I C +T G K +L +L L+L + + + L
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
+ IT + +++L L NLR L L SCK++A + L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279
>gi|413937766|gb|AFW72317.1| hypothetical protein ZEAMMB73_434085 [Zea mays]
Length = 403
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 218/350 (62%), Positives = 268/350 (76%), Gaps = 26/350 (7%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK LQ+SC K+TD G++Y++G LQKLT LNLEGC
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRG--------------------------LQKLTHLNLEGC 293
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PVTAACL+++S L SL LNLNRC + DDGCE F + LKVLNLGFN ITD CLVHLK
Sbjct: 294 PVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKE 353
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
L +LESLNLDSC IGD+GL +L GL L+ LELSDT+VG++GL+HLSGL+
Sbjct: 354 LISLESLNLDSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHLSGLS 403
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 342 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
GL HL LT LES+N+ + I+D ++ L L++LK L L +ITD G++ + L L
Sbjct: 226 GLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKL 285
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
THL+L G +T + + +L L + G+ D G ++ + L L +LNL N +T
Sbjct: 286 THLNLEGCPVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFN-YIT 344
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
D L + L L SLN+ + +I GL HLK L L+SL L +V N ++ L
Sbjct: 345 DACLVHLKELISLESLNLDSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHL 399
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 129/268 (48%), Gaps = 3/268 (1%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
+L S+ ISCS+V DSGI L+ S + S+ C I L V +L
Sbjct: 137 SLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESG-LGVLSGLSNLSSLSFKRS 195
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 298
VTA + + + L +L L+L C G + L+ LN+ + N I D + +L
Sbjct: 196 NAVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYL 255
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
LTNL+ L L C I D G+ + GL L L L V ++ L +SGL++L +NL+
Sbjct: 256 TDLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLN 315
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
GI D GL LK LNL ITD L L L L L+L +I D G ++L
Sbjct: 316 RCGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHL 375
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLS 446
+ L+SLE+ + + G++H+ LS
Sbjct: 376 KGLVLLQSLELSDTEVGNNGLQHLSGLS 403
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 365 GSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
G L L L+ L+SLN+ I D+ + LT LT L L L +ITD G +Y+R +
Sbjct: 225 GGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQK 284
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
L L + G +T A ++ I LSSL LLNL++ C + D E GL L LN+ + I
Sbjct: 285 LTHLNLEGCPVTAACLEAISGLSSLVLLNLNR-CGIYDDGCENFEGLKRLKVLNLGFNYI 343
Query: 484 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
T A L HLK L +L SL L+SCK+ + + L+
Sbjct: 344 TDACLVHLKELISLESLNLDSCKIGDDGLSHLK 376
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-IT 411
S+++S + ++D + L SS++SL + QI+++GL L+ L+ L+ L + +T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
G N NL +L++ G G+ H+KDL+ L LN+ + D ++ ++ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L L +S +IT G+ +++ L+ L L LE C VTA
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTA 297
>gi|255088361|ref|XP_002506103.1| predicted protein [Micromonas sp. RCC299]
gi|226521374|gb|ACO67361.1| predicted protein [Micromonas sp. RCC299]
Length = 610
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 199/521 (38%), Positives = 295/521 (56%), Gaps = 29/521 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQ++F +LV +R LT F C L + L YPG+ D W+ V+A+ +L
Sbjct: 100 VLPSDLSQRVFEDLVQTRRLTARVTGDFIGCHLTEANLRSYPGLTDDWLAVLATSAPNLS 159
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S++LSG + +T G L C L+SLD + C ++D L + +S L L+ + I
Sbjct: 160 SINLSGCAALTPDGFNALAACVELESLDVSECPGVNDNALAAVASMSRLRRLACAGCDGI 219
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T G++ +G L ++LERC + GLV L GL +LE L+ WCN + +D+ L L
Sbjct: 220 TGAGLRYVSGATKLRCVNLERCNGLTNGLVYLSGLTELERLDAGWCNHVDSNDVTSLRSL 279
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
LK L ++ +KV D G+A + SL L LNL G
Sbjct: 280 KKLKHLNLARTKVDDQGVATIG--------------------------SLSALETLNLAG 313
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
C +T L L +L L+L C++ D G + + + L+VLNLG++ +TDE + HL
Sbjct: 314 CRITDGACFLLGGLTALKELSLEWCRVGDGGVRRLASLAKLEVLNLGYSSVTDEGVQHLA 373
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
L L ++LDSC +GD+ L NL+ + LSDT VG+ GL+ +S LT L +NLS+
Sbjct: 374 PLVKLREIDLDSCQVGDDACKALAEWPNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSY 433
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
+ +SD + L +S++SL+LD R +TD GL L L + LDLFGARITD GA +LR
Sbjct: 434 SNVSDDGVMYLENAASIRSLSLDTRMVTDEGLGYLAKLKDIEELDLFGARITDEGAKHLR 493
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
+ L++LE+CGGG+TDAGVKHI D LTLLNL QN ++D + + L L SLN+
Sbjct: 494 HMPRLKTLELCGGGITDAGVKHIGDACRELTLLNLGQNFRISDAAVPFLLQLHKLGSLNL 553
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSR 518
SRI++ G+ L L NL +L L+ C +V+ ++ L+++
Sbjct: 554 QYSRISNEGVTQLSQLSNLTTLALKGCNRVSQAAVEELRAK 594
>gi|414586492|tpg|DAA37063.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 356
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 176/299 (58%), Positives = 215/299 (71%), Gaps = 26/299 (8%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL+ LQ+S K++ G++YL+G L KL LNLEGC
Sbjct: 259 NLRELQLSSCKISAFGVSYLRG--------------------------LHKLGHLNLEGC 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
VTA CL+ +S L SL LNL+RC + D+GCE + LK L+LGFN+ITD CL+HLK
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 4/219 (1%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-T 336
SL ++L +++TD LK ++++SL D C I + GL L+G NL L +
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 337 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
V + G + + L NL +++L I+ G + K ITD+ + L+
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
LT L L L +I+ G +YLR L L + G +T ++ I +L+SL LLNLS+
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
C + D+ E + GLT L +L++ ++IT A L HLK +
Sbjct: 316 -CGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKVM 353
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 116/233 (49%), Gaps = 10/233 (4%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVF 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK S + S+ C I H
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISE----HGL 177
Query: 226 --LTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
L+ LT L+++ C VTA + + L +L L+L RC + G + L+
Sbjct: 178 KTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 283 LNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
LNL + N ITD + +L LTNL L L SC I G+ L GL L L L V +
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAV 297
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
L +S L +L +NLS GI D L GL+ LK+L+L QITD L L
Sbjct: 298 CLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHL 350
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 7/240 (2%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
LQ + L + G VT A ++ +++ G SL ++L+ ++D G S++ L +
Sbjct: 111 LQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDY 168
Query: 288 -NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
++I++ L L G +NL SL++ C + EG L NL L+L + GL H
Sbjct: 169 CDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIH 228
Query: 346 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L GL LE +NL + GI+D ++ L+ L++L+ L L + +I+ G++ L L L HL+
Sbjct: 229 LKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLN 288
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L G +T + +L L + G+ D G +++K L+ L L+L N +TD L
Sbjct: 289 LEGCAVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFN-QITDACL 347
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-A 408
+L S++LS + ++D L SS++SL D QI++ GL L+ + LT L + A
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+T GA N NL +L++ + G+ H+K L L LNL +TD ++ +S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
LT L L +S+ +I++ G+ +L+ L L L LE C VTA
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTA 296
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 359 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 416
+ G++D + +A SL S++L +TD+G L + + L + +I++ G
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178
Query: 417 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
L F NL SL I C +T G K +L +L L+L + + + L
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
+ IT + +++L L NLR L L SCK++A + L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279
>gi|24461848|gb|AAN62335.1|AF506028_2 CTV.1 [Citrus trifoliata]
Length = 205
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/272 (68%), Positives = 189/272 (69%), Gaps = 77/272 (28%)
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
LGSLFYLNLNRCQLSDDGCEKFS NLGFNEITDECLV+ +LDSC
Sbjct: 1 LGSLFYLNLNRCQLSDDGCEKFS--------NLGFNEITDECLVY----------HLDSC 42
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
GIGDEGLVN LSFTGISDGSLRKLAG
Sbjct: 43 GIGDEGLVNY----------------------------------LSFTGISDGSLRKLAG 68
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
LSSLKSLNLDARQITDTGLAALTS HLDLFGARITDSGAAYLRNFKNLRSLEICGG
Sbjct: 69 LSSLKSLNLDARQITDTGLAALTS----AHLDLFGARITDSGAAYLRNFKNLRSLEICGG 124
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
GLTDAGVKHIKDLSSL LLNLSQNCNLTDKTLE VSNSRITSAGLRH
Sbjct: 125 GLTDAGVKHIKDLSSLALLNLSQNCNLTDKTLEY-----------VSNSRITSAGLRH-- 171
Query: 493 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
LESCKVTANDIKRLQSRDLPNL
Sbjct: 172 --------PLESCKVTANDIKRLQSRDLPNLF 195
>gi|147832652|emb|CAN74892.1| hypothetical protein VITISV_002002 [Vitis vinifera]
Length = 300
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 166/181 (91%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+ GL NLESINLSFT ++D LRK + LSSLKSLNLDA QITD GLAALTSLTGLTHLDL
Sbjct: 113 MEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDL 172
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
FGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LE
Sbjct: 173 FGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLE 232
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
LISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPNL +
Sbjct: 233 LISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPNLPA 292
Query: 526 F 526
F
Sbjct: 293 F 293
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
+ +L+ +NL F +TD L L++L+SLNLD+ I D GL LT L L L+L
Sbjct: 116 LANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDLFGA 175
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT 395
++ SG +L NL+S+ + G++D ++ + L+ L LNL +TD L ++
Sbjct: 176 RITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELIS 235
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
LT L L + +RIT++G +L+ KNL+SL + +T V IK L S L NL
Sbjct: 236 GLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVT---VNDIKKLQSKDLPNL 290
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
VN++GL LES+N+ + +TDS ++ S L++LKSL + ++TD+G+A L L+ +
Sbjct: 110 FVNMEGLANLESINLSF-TAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLT 168
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQL 266
+ + + I +L + + L L + G +T A + ++ L L LNL++ C L
Sbjct: 169 HLDLFGARITDSGT--SYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNL 226
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+D E S + +L L++ + IT+ L HLK L NL+SL LDSC +
Sbjct: 227 TDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKV 274
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 4/201 (1%)
Query: 211 ILCSMIIRLFCLHVF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
I S+I + + +F + L L +NL VT + L SAL SL LNL+ Q++D
Sbjct: 96 ITTSLIPFFYTILLFVNMEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITD 155
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
G + + L L+L ITD +L+ NL+SL + G+ D G+ N+ L L
Sbjct: 156 AGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCL 215
Query: 329 KCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L LS + L +SGLT L S+++S + I++ L+ L L +LKSL LD+ ++T
Sbjct: 216 TVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVT 275
Query: 388 DTGLAALTSLTGLTHLDLFGA 408
+ L S L +L F A
Sbjct: 276 VNDIKKLQS-KDLPNLPAFAA 295
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 27/196 (13%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ GL NL+S+ +S + VTDSG+ ++L L L
Sbjct: 113 MEGLANLESINLSFTAVTDSGLRK--------------------------SSALSSLKSL 146
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
NL+ +T A L +L++L L +L+L +++D G +L+ L + +TD +
Sbjct: 147 NLDAHQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGV 206
Query: 296 VHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++K LT L LNL +C + D+ L ++GL L L +S++++ ++GL+HL L NL+S
Sbjct: 207 KNIKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKS 266
Query: 355 INLSFTGISDGSLRKL 370
+ L ++ ++KL
Sbjct: 267 LTLDSCKVTVNDIKKL 282
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++LS + VTDSGL S+L+SL+ + QI+D GL L L+ LT L
Sbjct: 117 ANLESINLSFTAVTDSGLRKSSALSSLKSLNLD-AHQITDAGLAALTSLTGLTHLDLF-G 174
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G NL L++ G+ N+K L L LN+ +TD ++ +
Sbjct: 175 ARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLELI 234
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
SGLT L SL +S S++T++G+ +LK L ++ S+ C + + ++KL
Sbjct: 235 SGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVN---------DIKKLQSK 285
Query: 236 NLEGCPVTAAC 246
+L P AAC
Sbjct: 286 DLPNLPAFAAC 296
>gi|384254255|gb|EIE27729.1| RNI-like protein, partial [Coccomyxa subellipsoidea C-169]
Length = 515
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 185/519 (35%), Positives = 281/519 (54%), Gaps = 42/519 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q + +EL+Y+ L + L F + +L LG+ GV D W+ +A QG+ +
Sbjct: 24 LPADLAQLVLDELIYTASLDQEGLALFSRQHIYNLKLGECAGVEDDWLRHLAPQGTGMHG 83
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ ++ SG L +NL+ L C +S L L LS +TSL+ + + I+
Sbjct: 84 LFIT----KHSGAAGL---TNLRDLSLQGCEGLSS--LSALTDLSKVTSLNLKGCSGIS- 133
Query: 122 QGMKAFAGLINLVKLD--LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G++ +G + L + C + G+ +LE+L++ WC+ ITD+D+K L+ L
Sbjct: 134 -GLRHLSGALFCASLGSVAQMCGSEYWSGA-WAGMKQLENLDLSWCSGITDADVKALAAL 191
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
T + LQ+S + V DSGI L+ +S RL CL L G
Sbjct: 192 TAITGLQLSRTLVADSGIFALRSMS-------------RLRCL-------------GLAG 225
Query: 240 CP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
C ++ + S+SAL SL LNL C +S G S + L+ LN+ + D L
Sbjct: 226 CSGISNGAVGSVSALTSLEELNLEWCTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAW 285
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
LTNL +LNLDSC + D GL +++ L NL+ + LSDT + G+ + L ++ +NLS
Sbjct: 286 TSLTNLRTLNLDSCPVSDRGLHHISELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLS 345
Query: 359 FT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
+T G+ D L +A L++L L+LD R TD GL + LT L LDLFGARITD+G +
Sbjct: 346 YTAGVGDLGLAAVARLTALTELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVH 405
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
LR F+ L LEICGGG++D GVK + L+ L L+L+QN +TD+ +SGL+ L LN
Sbjct: 406 LRPFRRLERLEICGGGISDEGVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLN 465
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
++ +++T G+ L+ L NL SL L+ +V RLQ
Sbjct: 466 LTGTQLTGNGILPLRSLTNLESLCLKRTRVKQAAADRLQ 504
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 169/345 (48%), Gaps = 11/345 (3%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L G+ D + +A+ +++ + LS + V DSG+ L+ S L+ L C
Sbjct: 169 LENLDLSWCSGITDADVKALAAL-TAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCS 227
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
IS+G + + L++L L+ ++ +G+ + L L L++ T L
Sbjct: 228 GISNGAVGSVSALTSLEELNLEWCT-VSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWT 286
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI---AYLKGLSISSVI 209
L L +LN+ C ++D + +S LTNL+ + +S + +TD G+ A LKG+ ++
Sbjct: 287 SLTNLRTLNLDSCP-VSDRGLHHISELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLS 345
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
+ + L + L LT L+L+G T L +++ L L L+L +++D
Sbjct: 346 YTAGVGDLGL----AAVARLTALTELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDA 401
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNL 328
GC L+ L + I+DE + L LT L+ L+L + I D + L+GL L
Sbjct: 402 GCVHLRPFRRLERLEICGGGISDEGVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQL 461
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+ L L+ TQ+ +G+ L LTNLES+ L T + + +L L
Sbjct: 462 RGLNLTGTQLTGNGILPLRSLTNLESLCLKRTRVKQAAADRLQPL 506
>gi|303286333|ref|XP_003062456.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455973|gb|EEH53275.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 519
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 174/530 (32%), Positives = 277/530 (52%), Gaps = 26/530 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q++F+ L + LT +L F C L D V D ++ + +SL
Sbjct: 1 LPPDLAQRVFDVLARANELTVDALGRFEGCFLSDASGLDANVVTDAFLAALRDVATSLSR 60
Query: 62 VDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G D SG + + C+ + ++ + C + D L + ++L S N+A+
Sbjct: 61 IDLTGCDALTSGGLRSNFPCCARMTIVNVSECAGVDDDALAAMASATHLKSFFCEGNDAV 120
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T G++ A L +L +L ERC R+ G+ +L GL L SLN+ WC ++ + L
Sbjct: 121 TGSGVRHLASLTSLRELSFERCARLREGMCHLAGLRNLRSLNLGWCGKLSAKETS--RAL 178
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
T S + T ++ + + + L + RL LN+ G
Sbjct: 179 TPFFPASASAPRSTPIELSLARTGANADTARALGQLAGRLVA-------------LNVSG 225
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
C + L L L +L L+L RC++SD G + + L+ LNLG+ +T++ ++ L
Sbjct: 226 CAMNDDALHFLGGLINLRSLSLERCRVSDVGVRQLCGLRDLRELNLGYTRVTNDGVLALA 285
Query: 300 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
LT L +NLDS G +GD G+ L+ L +SDT VG G+R L L +NL
Sbjct: 286 PLTELRVVNLDSLGDVGDAGMEVARRWEKLESLCVSDTGVGDGGVRKLKSCARLRDLNLG 345
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
+T ++D L L ++SL++LNLD+R ITD G+ L +L LT +DLFGA+I+D GA+ L
Sbjct: 346 YTNVTDDGLEHLEDMTSLRNLNLDSRLITDDGVRHLANLGALTAIDLFGAKISDEGASRL 405
Query: 419 RNFK---NLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
FK L LE+CGG LT+ GVK I + + LN+ +N +TD ++ + + L
Sbjct: 406 --FKCTPKLERLELCGGSLTNVGVKRIAEHCKGMKTLNIGRNAKITDDCVDDVVTMRELT 463
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRDLPNL 523
SLN++ S+ITS G+R L L L SL ++ C+ V+ ++RL+ R+ P L
Sbjct: 464 SLNLAFSKITSDGVRKLAALPCLTSLAIKGCESVSLAAVERLK-REAPAL 512
>gi|59802533|gb|AAX07510.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 550
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 182/494 (36%), Positives = 267/494 (54%), Gaps = 28/494 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LS + VT+ GL LK+ +NL +LD F ++D GL+ L+GL+NLTSL+
Sbjct: 18 ANLTSLGLSATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQELKGLTNLTSLNLGVT 76
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G++ GL NL L+L GL +LKGL KL SL+++ +TD ++ L
Sbjct: 77 Q-VTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGTE-VTDVGLQEL 134
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLS-----------ISSVIFILCSMIIRLFCLHVF 225
GL +L L++ ++VT+ G+ LKGL+ ++ V + L L +
Sbjct: 135 KGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNLASLDLR 194
Query: 226 -----------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
L L LT L+L VT L L+ L L L+L+R ++ G +
Sbjct: 195 DTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIEL 254
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
L +L+L +TD L LKGLT+L SL+L + D GL L GL +L L LS
Sbjct: 255 KSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLS 314
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
T+ +GL+ L+GLTNL S++LS T ++D L++L + L SL+L +TDTGL L
Sbjct: 315 GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKEL 374
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
LT LT LDLF ++TD G L L SL + +TD G+K +K+L+ L LL+LS
Sbjct: 375 KGLTNLTALDLFSTQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELKELTQLALLDLS 434
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+TD L+ +SGLT L L + +R+T AGL+ LK L +L SL L +VT ++
Sbjct: 435 -GTRVTDAGLQELSGLTKLAFLRLGGTRVTDAGLKELKGLTSLTSLHLSGTRVTDAGLQE 493
Query: 515 LQSRDLPNLVSFRP 528
L L NL + P
Sbjct: 494 LSG--LTNLTTTGP 505
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 250/449 (55%), Gaps = 6/449 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ VTD+GL LK +NL SL + ++++ GL+ L+ L+NLT+L + +T G++
Sbjct: 4 TQVTDAGLQELKGLANLTSLGLS-ATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQE 61
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
GL NL L+L GL LKGL L SLN+ +TD+ ++ L GL L SL
Sbjct: 62 LKGLTNLTSLNLGVTQVTGAGLQELKGLTNLTSLNL-GSTGVTDAGLQDLKGLNKLASLD 120
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
+ ++VTD G+ LKGL+ + + + + + + L L L L+L VT
Sbjct: 121 LRGTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQE--LKGLNNLASLDLRDTRVTDVG 178
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L L L +L L+L +++D G ++ + +L L+L ++TD L L GLT L S
Sbjct: 179 LQELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLAS 238
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L+L G+ GL+ L L L+LS T+V +GL L GLT+L S++L T ++D
Sbjct: 239 LDLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVG 298
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
L++L GL+SL SL+L + TD GL L LT LT L L R+TD G L++F L S
Sbjct: 299 LKELKGLTSLTSLHLSGTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTS 358
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L + G G+TD G+K +K L++LT L+L + +TD L+ ++GLT L SL +S + IT
Sbjct: 359 LHLGGTGVTDTGLKELKGLTNLTALDLF-STQVTDVGLQELNGLTKLTSLYLSAAAITDT 417
Query: 487 GLRHLKPLKNLRSLTLESCKVTANDIKRL 515
GL+ LK L L L L +VT ++ L
Sbjct: 418 GLKELKELTQLALLDLSGTRVTDAGLQEL 446
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 182/470 (38%), Positives = 256/470 (54%), Gaps = 20/470 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++L + VTD+GL LK + L SLD +++D GL+ L+GL++LT L R
Sbjct: 90 TNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLR-GTEVTDVGLQELKGLNSLTELRLRAT 148
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G++ GL NL LDL R TR+ GL LKGL L SL+++ +TD+ +K
Sbjct: 149 E-VTNVGLQELKGLNNLASLDL-RDTRVTDVGLQELKGLNNLASLDLRDTK-VTDTGLKE 205
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L GLTNL +L + ++VTD G+ L GL+ + + + + + + L S KL LL
Sbjct: 206 LKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIE--LKSFTKLALL 263
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+L G VT A L L L SL L+L +++D G ++ + SL L+L TD L
Sbjct: 264 DLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLSGTRTTDAGL 323
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L GLTNL SL+L + D GL L L L L T V +GL+ L GLTNL ++
Sbjct: 324 QELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKELKGLTNLTAL 383
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
+L T ++D L++L GL+ L SL L A ITDTGL L LT L LDL G R+TD+G
Sbjct: 384 DLFSTQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELKELTQLALLDLSGTRVTDAGL 443
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
L L L + G +TDAG+K +K L+SLT L+LS +TD L+ +SGLT L +
Sbjct: 444 QELSGLTKLAFLRLGGTRVTDAGLKELKGLTSLTSLHLS-GTRVTDAGLQELSGLTNLTT 502
Query: 476 LNVS----NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 521
+ R TS RH L++ R + AN I+R P
Sbjct: 503 TGPPRYEGDERGTSGVPRHSPSLQDHREV--------ANPIERRAQTQRP 544
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 163/437 (37%), Positives = 229/437 (52%), Gaps = 55/437 (12%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
F Q++D GL+ L+GL+NLTSL +T +G+K L NL LDL
Sbjct: 2 FSTQVTDAGLQELKGLANLTSLGLSATK-VTNEGLKELKELTNLTALDL----------- 49
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
+ +TD+ ++ L GLTNL SL + ++VT +G+ LKGL+
Sbjct: 50 --------------FSTGVTDTGLQELKGLTNLTSLNLGVTQVTGAGLQELKGLT----- 90
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
LT LNL VT A L L L L L+L +++D
Sbjct: 91 ---------------------NLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGTEVTDV 129
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G ++ + SL L L E+T+ L LKGL NL SL+L + D GL L GL NL
Sbjct: 130 GLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNLA 189
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L+L DT+V +GL+ L GLTNL +++L T ++D L++L GL+ L SL+L +T T
Sbjct: 190 SLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGT 249
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
GL L S T L LDL G R+TD+G L+ +L SL + G +TD G+K +K L+SLT
Sbjct: 250 GLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLT 309
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L+LS TD L+ ++GLT L SL++S++R+T GL+ LK L SL L VT
Sbjct: 310 SLHLS-GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTD 368
Query: 510 NDIKRLQSRDLPNLVSF 526
+K L+ L NL +
Sbjct: 369 TGLKELKG--LTNLTAL 383
>gi|452822896|gb|EME29911.1| leucine-rich repeat family protein [Galdieria sulphuraria]
Length = 588
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 174/520 (33%), Positives = 276/520 (53%), Gaps = 30/520 (5%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
PR++ Q++ LV SR L LE + + L V + W+ + + S+L +
Sbjct: 80 PRELIQRLVEYLVESRRLNCEFLETLQQHCVYRLRFTSQLQVTNDWLFYLQNL-STLSRL 138
Query: 63 DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+L ++D GL +L + +L LD C+QI+ GL+HL GL L L + IT+
Sbjct: 139 ELKDCKFISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQHLAGLKYLKVLVLKSCKQITS 198
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ A L NL +LD+E+C+ + L +L L KLE N WC ++D + LS
Sbjct: 199 EGLSYLANLHNLTRLDIEQCSEVSDSFLQSLNRLTKLEDFNCAWCFRLSDEGLTILSNFH 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
++ L IS ++V+ + FL + +L +L + G
Sbjct: 259 RMRYLNISKTRVSQN--------------------------FGRFLPGMPRLRVLKVAGT 292
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLK 299
+ L L SL L++ C + D + ++ LNLG+ +I++ + ++L
Sbjct: 293 GFSDRDAQYLRGLYSLRELDVEGCSVGDPFLATIYALPRIRKLNLGYTKISERGVSLYLG 352
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
+ L+ LNLDSC IGD + +L+ L LKCL+L+DT V SSGL L+ LT+LE++ L++
Sbjct: 353 NMLKLQYLNLDSCLIGDFAVEHLSRLEQLKCLDLTDTTVSSSGLSGLANLTSLETLILAY 412
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
T +S+ L L L+ L+SL+LD R I+D GLA L L L HLDLFGA++TD+G ++
Sbjct: 413 TSVSNSGLEHLKNLTKLESLSLDTRGISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHIS 472
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
L SLE+C GG+TDAG++ I L +L LNLSQN +TD L +S L+ L SLN+S
Sbjct: 473 EISTLESLEVCAGGVTDAGLESIGKLRALRTLNLSQNHRITDAGLIHLSCLSHLTSLNLS 532
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519
+ + ++ +LR + +E C ++ RL++
Sbjct: 533 YTNVGDGICSLVQKCPSLRMIGIERCGLSIAAKIRLRTHQ 572
>gi|147821391|emb|CAN67937.1| hypothetical protein VITISV_014237 [Vitis vinifera]
Length = 216
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 138/178 (77%), Gaps = 17/178 (9%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 47 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 106
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 107 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 166
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A+GM+AF+ L+NL KLDLERC+RIHGGL++LK DSD+K LSG
Sbjct: 167 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLK-----------------DSDLKALSG 207
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
+L S+++ G +TD G+ +KD S++ +L+ + +++ L+ ISGL+ L SL+ S
Sbjct: 104 SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSN 163
Query: 483 -ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
+T+ G+R L NL L LE C + L+ DL L
Sbjct: 164 TVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKDSDLKAL 205
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 375 SLKSLNL-DARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLR--SLEIC 430
+++ +NL + ++ D+ + ++S L +DL G+ +TD G + L++ N++ S C
Sbjct: 78 AIQDVNLGEYPEVNDSWMDIISSQGLSLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYC 137
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
+++ G+K+I LS+LT L+ ++ +T + + S L L L++ GL H
Sbjct: 138 -DQISEPGLKNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIH 196
Query: 491 LKPLKNLRSLTLESC 505
LK +L++L+ C
Sbjct: 197 LKD-SDLKALSGNVC 210
>gi|219122964|ref|XP_002181805.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407081|gb|EEC47019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 486
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 166/518 (32%), Positives = 262/518 (50%), Gaps = 46/518 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP+D+ I L+ L +L R+C L L L GV D+W++ ++++ S
Sbjct: 1 LPQDVVDDILQSLIRHSALNATTLRILRNCELGVLSLSGCRGVTDEWLEALSAESSD--- 57
Query: 62 VDLSGSDVTDSGLIHLKDCS----NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S + + + H S N LD +++D GL L L L +
Sbjct: 58 ---SPPHLRTALMWHPCAASSALTNTTLLDLRGSQRLTDRGLMQLHDLGRLEVAKLDNCH 114
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ +G+ + L L L C R+ +VN+ L L++L++ C CITD + L
Sbjct: 115 SVVGRGLVVLSSSPRLHTLSLTNCRRLTDEAIVNISHLQSLQALSLDGCRCITDFSLAAL 174
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ + NL+ L +S C +T+ G+ L+ LQ+L +
Sbjct: 175 ADMYNLRKLGLSQCDLITNEGLKALE--------------------------HLQRLQEI 208
Query: 236 NLEGC-PVTAACLDSLSAL----GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+L C V+ A + +L+A +L L L RC ++D+G + KI ++K L L ++ +
Sbjct: 209 SLGWCRQVSDAGIQTLTAQPGRSSNLQILRLARCPITDEGVQYLGKIRNVKTLELCYSAV 268
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
D L L L LE LNLDSC IGD + N L NL L+L+D+ + G+ ++
Sbjct: 269 KDIHLTKLVNLPMLEELNLDSCPIGDLAIQHFANHNVLPNLVSLDLADSDISDLGMVQIA 328
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
T L+ ++L + IS+ LR L+ L+ L+ LNLD+R I+D GL L L L LD+F
Sbjct: 329 KFTKLKRLSLFYCSISNRGLRHLSILTELRVLNLDSRDISDDGLRHLQHLKQLKSLDIFS 388
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
R+TD G YL K L SLE+CGGG+ DAG + L +LT LNLSQN +T++ +
Sbjct: 389 GRVTDLGCTYLSKIKTLESLELCGGGVRDAGCASLAKLENLTSLNLSQNERITNRGAAAL 448
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+ L+ L +LN+S++R+ ++ LR+ L NL+SL L C
Sbjct: 449 AALSKLKALNLSHTRVNASALRYFSGLMNLQSLALYGC 486
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 191/443 (43%), Gaps = 88/443 (19%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L++C L L + C ++D LE L S+ + R A+ A + L N L
Sbjct: 27 LRNC-ELGVLSLSGCRGVTDEWLEALSAESSDSPPHLR--TALMWHPCAASSALTNTTLL 83
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL R+ GL+ L L +LE + C+ + + LS L +L ++ C ++TD
Sbjct: 84 DLRGSQRLTDRGLMQLHDLGRLEVAKLDNCHSVVGRGLVVLSSSPRLHTLSLTNCRRLTD 143
Query: 195 SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSAL 253
I V ++ LQ L L+L+GC +T L +L+ +
Sbjct: 144 EAI--------------------------VNISHLQSLQALSLDGCRCITDFSLAALADM 177
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC- 312
+L L L++C L IT+E L L+ L L+ ++L C
Sbjct: 178 YNLRKLGLSQCDL-----------------------ITNEGLKALEHLQRLQEISLGWCR 214
Query: 313 GIGDEGLVNLTGL----CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
+ D G+ LT NL+ L L+ + G+++L + N++++ L ++ + D L
Sbjct: 215 QVSDAGIQTLTAQPGRSSNLQILRLARCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLT 274
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTS---LTGLTHLDLFGARITDSGAAYLRNFKNLR 425
KL L L+ LNLD+ I D + + L L LDL + I+D G + F L+
Sbjct: 275 KLVNLPMLEELNLDSCPIGDLAIQHFANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLK 334
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + +++ G++H+ S LT L LN+ + I+
Sbjct: 335 RLSLFYCSISNRGLRHL-------------------------SILTELRVLNLDSRDISD 369
Query: 486 AGLRHLKPLKNLRSLTLESCKVT 508
GLRHL+ LK L+SL + S +VT
Sbjct: 370 DGLRHLQHLKQLKSLDIFSGRVT 392
>gi|302853080|ref|XP_002958057.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
gi|300256635|gb|EFJ40897.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
Length = 581
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 191/556 (34%), Positives = 285/556 (51%), Gaps = 68/556 (12%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPGVNDKWMDVIASQGSSLL 60
LP D+ Q++F+EL+ + + L FR+ L + L G+ ND+ + + S L
Sbjct: 41 LPADLVQRVFDELLAAGRFSLSDLTRFRELDLDTVVLVGRADVRNDRLRSL--EKCSRLR 98
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S+DL+G V+D G+ L+ LQ L + C+ ++D L H+RGL+ L L R I
Sbjct: 99 SLDLTGCVQVSDVGVASLRRHGGLQRLRLSHCVTLTDAALNHVRGLTGLQELELRECELI 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T +G+ +GL L LDL++C RI GGL +L L L +L + WC + DS++ L L
Sbjct: 159 TGEGLMQLSGLTQLKTLDLDQCRRIKGGLQHLTSLRHLATLRLGWCPLLGDSEVTWLREL 218
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
L+ L+++ ++VTD G+++L L+ LT L+L G
Sbjct: 219 GQLRELRLAYTQVTDVGVSHLAALT--------------------------ALTHLDLGG 252
Query: 240 CP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----------FN 288
C +T A L L +L L+L GC +F G ++ + +
Sbjct: 253 CTRLTDAAAAPLQRLTALQVLSLY-------GCGQFGNAGLAMLIAVPLLSLNSLTLSYT 305
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS- 347
+T L L L+ L L+LDSC +GD L L L L+LS+T VG GL L+
Sbjct: 306 AVTTPGLTALSSLSRLTLLSLDSCAVGDAVCRVLRRLPRLANLDLSETSVGDGGLDALTV 365
Query: 348 --GLTNLESINLSFTG------------ISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
T+L + L++T I+D L KL+ L L+ L+LD+ +TD L
Sbjct: 366 SGPPTSLTHLKLTYTKVNELGMPGKCVFITDEGLSKLSLLVGLQQLDLDSGTLTDACLRH 425
Query: 394 LTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
+T L+ LT LDLF RITD+GA NLRSLE CGG LTDAG H+ L+SLT
Sbjct: 426 VTGLSALTGLDLFSCRITDAGARLLGGSGHLGGNLRSLECCGGLLTDAGAVHLARLTSLT 485
Query: 450 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
LNLSQN L D + L + L+ L L+++++ ITSA LR + L LR L++ + +VT
Sbjct: 486 CLNLSQNARLGDAGAQSLAASLSDLQELSLNHTNITSACLRDVAALPWLRYLSVSNTRVT 545
Query: 509 ANDIKRLQSRDLPNLV 524
+ +L+SR P+L+
Sbjct: 546 DAAVAKLRSRAHPDLI 561
>gi|307107435|gb|EFN55678.1| hypothetical protein CHLNCDRAFT_133919 [Chlorella variabilis]
Length = 553
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 175/486 (36%), Positives = 256/486 (52%), Gaps = 67/486 (13%)
Query: 36 LCLGQYPG-VNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCI 92
L LG YP V W+ +++ SL + DLS ++ + D L L +L L ++C+
Sbjct: 75 LPLGAYPERVQPSWLRCLST--PSLEAADLSKTEASGMDEVLASLGPTPHLAQLCLDYCV 132
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++DGGL L+G+++L LS +TA GM GL L +L L+ C +I L L
Sbjct: 133 DLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRLRRLSLQTCHQI--SLAPLA 190
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
L +LE L++ WC+ + DSD ++VTD G+A
Sbjct: 191 QLRQLEQLDVGWCSSLDDSD-----------------AQVTDHGLA-------------- 219
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC-QLSDDG 270
CLH SL +L LNL G V+ L +L L L LNL RC Q D
Sbjct: 220 --------CLH----SLGQLRALNLAGVRVSDEALAALLRHLPHLRALNLERCLQAGDAS 267
Query: 271 CEKFSKIG-SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
S+ L+ L+LG+ ++D L+ L GLT L L+L++C +GD GL L+ L ++
Sbjct: 268 LAAVSQRALQLRELHLGYTAVSDRGLLLLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMR 327
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L+LSDT + + ++ + LE +NLSFTG++D L++L LSSL+ LNLD+R TD
Sbjct: 328 QLDLSDTSASNETMSTVAAMRQLECLNLSFTGVNDLGLKRLRRLSSLRCLNLDSRHFTDA 387
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G+ ++ L GL LDLFGARI D+G A L KNLR LE+CGGG+TDAGV H+ L+ L
Sbjct: 388 GMVSVAQLAGLECLDLFGARIGDAGCASLSKLKNLRRLEVCGGGVTDAGVAHLVALTRLQ 447
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVT 508
L+L+Q S G S + N R++++ + HL L L +L L ++C T
Sbjct: 448 HLSLAQ-----------ASACWG--SCTLPNYRVSNSCILHLIKLNELMALNLSQACACT 494
Query: 509 ANDIKR 514
++ R
Sbjct: 495 TQNLHR 500
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 170/370 (45%), Gaps = 45/370 (12%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSIS 206
L +L L L + +C +TD + L G+T+L+ L ++ C +T G+ +L+GL+
Sbjct: 114 LASLGPTPHLAQLCLDYCVDLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRL 173
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
+ + I L L L++L L++ C + LD A Q+
Sbjct: 174 RRLSLQTCHQISL----APLAQLRQLEQLDVGWC----SSLDDSDA------------QV 213
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL 325
+D G +G L+ LNL ++DE L L + L +L +LNL+
Sbjct: 214 TDHGLACLHSLGQLRALNLAGVRVSDEALAALLRHLPHLRALNLE--------------- 258
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+CL+ D + + R L L ++L +T +SD L L GL+ L L+L+
Sbjct: 259 ---RCLQAGDASLAAVSQRAL----QLRELHLGYTAVSDRGLLLLGGLTQLHVLSLENCS 311
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
+ D GLA L+ LT + LDL ++ + + + L L + G+ D G+K ++ L
Sbjct: 312 VGDGGLAVLSHLTQMRQLDLSDTSASNETMSTVAAMRQLECLNLSFTGVNDLGLKRLRRL 371
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
SSL LNL + TD + ++ L GL L++ +RI AG L LKNLR L +
Sbjct: 372 SSLRCLNLDSR-HFTDAGMVSVAQLAGLECLDLFGARIGDAGCASLSKLKNLRRLEVCGG 430
Query: 506 KVTANDIKRL 515
VT + L
Sbjct: 431 GVTDAGVAHL 440
>gi|46447560|ref|YP_008925.1| hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401201|emb|CAF24650.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 761
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 187/542 (34%), Positives = 287/542 (52%), Gaps = 46/542 (8%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
+ I + F+ VY LT L A +DC L+ L L + D ++ + + ++L +
Sbjct: 194 KKIERLNFSNQVY---LTNAHLLALKDCKNLKALHLEACQALTDDGLEHL-TLLTALQHL 249
Query: 63 DLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+LS ++TD+GL HL + LQ LD + C + +D GL +L L+ L L R + IT
Sbjct: 250 NLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITD 309
Query: 122 QGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+ L+ L L L +C + GL++LK L L+ LN+ CN +TD+ ++ L+ LT
Sbjct: 310 AGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLT 369
Query: 181 NLKSLQI-SCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+L+ L + SC K+TD+G+A+L L ++ + +C+ + H L L L LNL
Sbjct: 370 SLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTH--LNPLTALQYLNLS 427
Query: 239 GCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECL 295
C +T A L+ L L +L YLNL++C+ L+D G E + + +L+ L+L + ++TD
Sbjct: 428 QCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGF 487
Query: 296 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 353
HL LT L+ L+L C + D GL +LT L L+ L+LS+ ++ GL HL+ L L+
Sbjct: 488 AHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQ 547
Query: 354 SINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDL-FGARI 410
+NLS ++D L+ L++L+ L+L Q +TD LA LT LT L LDL + +
Sbjct: 548 HLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENL 607
Query: 411 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
TD+G +L+ +L+ L + G G LTDAG+ H+ LS L L+LS LTD L +
Sbjct: 608 TDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKL 667
Query: 470 LTGLVSLNVSNSR--------------------------ITSAGLRHLKPLKNLRSLTLE 503
LT L LN+S +T AGL HL PL L+ L L
Sbjct: 668 LTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTGLQRLDLS 727
Query: 504 SC 505
C
Sbjct: 728 QC 729
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 247/454 (54%), Gaps = 38/454 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GLIHLK + LQ L+ + C +++D GLEHL L++L L+ +T G+
Sbjct: 331 NLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL 390
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ GL +L L L+ LN+ C+ IT++ ++ L LT L+ L
Sbjct: 391 TPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLN 450
Query: 187 IS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTA 244
+S C K+TD+G+ +L LT+LQ+ L+L C +T
Sbjct: 451 LSQCEKLTDAGLEHLTP-----------------------LTALQQ---LDLSWCYKLTD 484
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLT 302
A L+ L L YL+L+ C +L+D G + + +L+ L+L ++TD+ L HL L
Sbjct: 485 AGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLM 544
Query: 303 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF- 359
L+ LNL SC + D G +L+ L L+ L+LS Q + + L HL+ LT L+ ++L +
Sbjct: 545 ALQHLNLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYC 604
Query: 360 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 417
++D L L L+ L+ LNL +TD GLA LT+L+GL HLDL ++TD+G +
Sbjct: 605 ENLTDAGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVH 664
Query: 418 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
L+ +L+ L + LTD G+ + L++L L L NLTD L ++ LTGL L
Sbjct: 665 LKLLTDLQYLNLSRCENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTGLQRL 724
Query: 477 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTA 509
++S +T AGL HLK L L+ L L ++
Sbjct: 725 DLSQCWNLTDAGLIHLKLLTALQHLNLSDTNISP 758
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 186/357 (52%), Gaps = 45/357 (12%)
Query: 204 SISSVIFILCSMIIRL-FCLHVFLTSLQKLTL--------LNLEGC-PVTAACLDSLSAL 253
+I I RL F V+LT+ L L L+LE C +T L+ L+ L
Sbjct: 184 EFERIINHFSKKIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLL 243
Query: 254 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 311
+L +LNL+RC+ L+D G + + L+ L+L N+ TD L +L+ LT L+ L+L
Sbjct: 244 TALQHLNLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRG 303
Query: 312 CG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLR 368
C I D GL +LT L L+ L LS + +GL HL LT L+ +NLS ++D L
Sbjct: 304 CDKITDAGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLE 363
Query: 369 KLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRS 426
LA L+SL+ LNL + +++TD GLA LT L L HLDL ++TD G +L L+
Sbjct: 364 HLALLTSLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQY 423
Query: 427 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN----- 480
L + +T+AG++H+ L++L LNLSQ LTD LE ++ LT L L++S
Sbjct: 424 LNLSQCDNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLT 483
Query: 481 ---------------------SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 515
+++T AGL HL PL L+ L L +C K+T + + L
Sbjct: 484 DAGFAHLTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 540
>gi|428173313|gb|EKX42216.1| hypothetical protein GUITHDRAFT_74106 [Guillardia theta CCMP2712]
Length = 527
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 181/507 (35%), Positives = 277/507 (54%), Gaps = 35/507 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+P ++ Q +F+ L YSR L + L R C D L YP + D W++V+ +L
Sbjct: 42 IPNEMVQALFDSLAYSRRLEKSHLPLLSRIC---DASLFAYPLIADDWLEVLGESFHALT 98
Query: 61 SVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+D+S VTD G+ L+ +L+S+ C+++ D LE + LS+L+ LS +
Sbjct: 99 RLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRM 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ G+ + L+ + L+LER TR+ G+ +L+ L L LN+ W N DS + L
Sbjct: 159 ASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDS-FESLRS 217
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L LK L + T+ G+ L SL +L L +
Sbjct: 218 LPRLKRLNVCACPFTEDGLQAL--------------------------CSLTQLESLRMC 251
Query: 239 GCPVTA-ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
C V A + L LS+LG L L+L++C+ + D E + LK+L L +TD L
Sbjct: 252 SCKVGATSALVELSSLGKLKLLDLSQCEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLG 311
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
+L L +L++LNLD C + + GL + L NL+ L+LSD V SSGL L+GLT L+S+N
Sbjct: 312 YLSSLWDLKTLNLDCCHVTNGGLQTIANLTNLENLDLSDNVVTSSGLALLTGLTTLKSLN 371
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
L TG+SD + + GL++L LNLD+R ITD+GLA ++ LT L LDLFGA++T G
Sbjct: 372 LFSTGVSDAGVIHVTGLTNLVRLNLDSRLITDSGLACISGLTNLQELDLFGAKVTHHGTI 431
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
Y+ +L SLE+CGGGLTD ++ +K L+ + LN+SQN +L++ + +S ++ L SL
Sbjct: 432 YIGLLTSLTSLELCGGGLTDEAMRELKRLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSL 491
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTLE 503
N++ + +S G RHL +L SL L
Sbjct: 492 NIAGTNFSSDGARHLTIFTDLTSLCLR 518
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 160/326 (49%), Gaps = 34/326 (10%)
Query: 189 CSKVTDSGIAYLKGL-SISSVIFILCSMIIRL--FCLHVFLTSLQKLTLLNLEGCPVTAA 245
C VTD GI+ L+ L S+ S+ C +RL L V L + ++
Sbjct: 105 CIHVTDEGISRLRSLQSLRSIKLENC---LRLGDATLEVIGELSSLSHLSVSACTRMASS 161
Query: 246 CLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
+ LS L + LNL R +L +G E K+ +L++LNLG+ D+ L+ L L
Sbjct: 162 GVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDSFESLRSLPRL 221
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI-S 363
+ LN+ +C ++ GL+ L LT LES+ + + +
Sbjct: 222 KRLNVCACPFTED------------------------GLQALCSLTQLESLRMCSCKVGA 257
Query: 364 DGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
+L +L+ L LK L+L + D L AL L+ L L L R+TD G YL +
Sbjct: 258 TSALVELSSLGKLKLLDLSQCEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLW 317
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
+L++L + +T+ G++ I +L++L L+LS N +T L L++GLT L SLN+ ++
Sbjct: 318 DLKTLNLDCCHVTNGGLQTIANLTNLENLDLSDNV-VTSSGLALLTGLTTLKSLNLFSTG 376
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVT 508
++ AG+ H+ L NL L L+S +T
Sbjct: 377 VSDAGVIHVTGLTNLVRLNLDSRLIT 402
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 6/233 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + VTD GL +L +L++L+ + C +++GGL+ + L+NL +L +N +T+ G
Sbjct: 300 LAHTRVTDIGLGYLSSLWDLKTLNLD-CCHVTNGGLQTIANLTNLENLDLS-DNVVTSSG 357
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ GL L L+L G++++ GL L LN+ ITDS + +SGLTNL+
Sbjct: 358 LALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD-SRLITDSGLACISGLTNLQ 416
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL-EGCPV 242
L + +KVT G Y+ GL S LC + + L L ++ LN+ + +
Sbjct: 417 ELDLFGAKVTHHGTIYI-GLLTSLTSLELCGGGLTDEAMRE-LKRLTRMRNLNVSQNESL 474
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+ +S + L LN+ S DG + L L L F+ ++ CL
Sbjct: 475 SNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLRFDCLSRTCL 527
>gi|46447653|ref|YP_009018.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401294|emb|CAF24743.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 959
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 168/454 (37%), Positives = 250/454 (55%), Gaps = 16/454 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD GL +L+ LQ L+ N C + +D GL HL L +LT L + + IT G+
Sbjct: 352 NNLTDVGLAYLRPLITLQGLNLNSCKKFTDAGLAHLDSLIDLTQLGLAKCHNITDNGLAY 411
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
LI L L+L C ++ GLV+LK L+ L LN+ C+ +TD+ + L+ L L+ L
Sbjct: 412 LRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHLTPLVALQHL 471
Query: 186 QIS--CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP- 241
+S C +TD+G+A+L L ++ ++ C + H L L L LNL C
Sbjct: 472 DLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAH--LKPLVALKQLNLWACSN 529
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T A L L+ L +L +L+L C L+DDG + +L+ L+L G ++TD L HL
Sbjct: 530 LTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLT 589
Query: 300 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L L+ LN+ SC + D+GL +L L L+ L LS ++ GL HL+ L NL ++L
Sbjct: 590 SLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSL 649
Query: 358 SFTG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSG 414
S G ++D L LA L +L+ L+L+ +TD GLA L +L L L L +TD+G
Sbjct: 650 SECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAG 709
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+L L+ L + G LT G+ H+ L++LT L+LS NLTD L ++ L L
Sbjct: 710 LAHLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVAL 769
Query: 474 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
LN+S+ + T AGL HLKPL L+ L+L CK
Sbjct: 770 TYLNLSDCNNFTGAGLTHLKPLVALQYLSLSGCK 803
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 245/454 (53%), Gaps = 21/454 (4%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ+LD +FC +++D GL HL+ L L L+ + +T G+
Sbjct: 479 NITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLTGAGLAHL 538
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LI L LDL C + GL +LK L+ L+ L++ C +TD+ + L+ L L+ L
Sbjct: 539 TPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSLITLQQLN 598
Query: 187 I-SCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVT 243
I SC+ +TD G+A+LK L ++ + C + + H LTSL LT L+L C +T
Sbjct: 599 ISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAH--LTSLVNLTHLSLSECGNLT 656
Query: 244 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 301
A L L+ L +L L+LN C L+D G + +L+ L L +TD L HL L
Sbjct: 657 DAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPL 716
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS- 358
L+ LNL C + GL +LT L L L LS + GL HL+ L L +NLS
Sbjct: 717 VALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSD 776
Query: 359 ---FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDS 413
FTG L L L +L+ L+L +++TD GLA L L L L+L G +ITD+
Sbjct: 777 CNNFTG---AGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDA 833
Query: 414 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
G +L + L+ L + G LTD G+ H+K L +LT L+L + LTD L ++ L
Sbjct: 834 GLTHLMSLVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLTPLLA 893
Query: 473 LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
L LN+S+ + +T AGL HL PL+NL + L +C
Sbjct: 894 LTHLNLSDCNNLTVAGLAHLTPLENLTYVDLNNC 927
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 163/458 (35%), Positives = 241/458 (52%), Gaps = 16/458 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL +L+ LQ L+ N C +++D GL HL+ L LT L+ + + +T G+
Sbjct: 403 NITDNGLAYLRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHL 462
Query: 128 AGLINLVKLDLERCTR--IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C GL +L L+ L++L++ +C +TD + L L LK L
Sbjct: 463 TPLVALQHLDLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQL 522
Query: 186 QI-SCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PV 242
+ +CS +T +G+A+L L ++ + C + H L L L L+L GC +
Sbjct: 523 NLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAH--LKPLVALQYLSLSGCKKL 580
Query: 243 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 300
T A L L++L +L LN++ C L+DDG + +L+ LNL ++T L HL
Sbjct: 581 TDAGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTS 640
Query: 301 LTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
L NL L+L CG + D GL +L L L+ L+L+ + +GL HL L L+ + LS
Sbjct: 641 LVNLTHLSLSECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLS 700
Query: 359 FTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 415
G ++D L L L +L+ LNL +++T GLA LTSL LTHL L A +TD G
Sbjct: 701 ACGNLTDAGLAHLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGL 760
Query: 416 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
A+L L L + T AG+ H+K L +L L+LS LTD L + L L
Sbjct: 761 AHLTTLVALTYLNLSDCNNFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQ 820
Query: 475 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
LN+ +IT AGL HL L L+ L+L CK +D
Sbjct: 821 QLNLRGCKKITDAGLTHLMSLVALQCLSLSGCKKLTDD 858
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 175/350 (50%), Gaps = 35/350 (10%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S +++TD GL HLK LQ L+ + C +++ GL HL L NLT LS +T G+
Sbjct: 601 SCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGL 660
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L+ L +LDL C + GL +L L+ L+ L + C +TD+ + L+ L L+
Sbjct: 661 AHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVALQ 720
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP- 241
L +S C K+T G+A+ LTSL LT L+L C
Sbjct: 721 QLNLSGCKKLTGVGLAH--------------------------LTSLATLTHLSLSACAN 754
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T L L+ L +L YLNL+ C + G + +L+ L+L G ++TD L +LK
Sbjct: 755 LTDDGLAHLTTLVALTYLNLSDCNNFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLK 814
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L L+ LNL C I D GL +L L L+CL LS ++ GL HL L L ++L
Sbjct: 815 PLVALQQLNLRGCKKITDAGLTHLMSLVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSL 874
Query: 358 -SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 405
++D L L L +L LNL D +T GLA LT L LT++DL
Sbjct: 875 GECVKLTDDGLAHLTPLLALTHLNLSDCNNLTVAGLAHLTPLENLTYVDL 924
>gi|46446831|ref|YP_008196.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400472|emb|CAF23921.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 666
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 164/448 (36%), Positives = 248/448 (55%), Gaps = 13/448 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L F C I+D GL HL L++L L+ + IT G+
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL +C+++ GL +L L L+ L + +C +TD+ + L+ LT L+ L +
Sbjct: 257 TLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLDL 316
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA 244
S C +TD+G+A+L L ++ + C + H LTSL L L+L C +T
Sbjct: 317 SNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAH--LTSLTGLQHLDLSNCKNLTD 374
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
A L L++L +L +LNL+ C +L+D G + + +L+ LNL +T L HL LT
Sbjct: 375 AGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTG 434
Query: 304 LESLNLD-SCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 360
L+ L+L S + D GL +L L L+ L L+ ++ +GL HLS L L+++ LS+
Sbjct: 435 LQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQ 494
Query: 361 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 418
++ L L L +L+ L+L + +TD GLA L L L HL+L G ++TD+G A+L
Sbjct: 495 NLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHL 554
Query: 419 RNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
+ L+ L + LTDAG+ H+K L +L L+LS NLTD+ L + L L LN
Sbjct: 555 TSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLRPLVALQHLN 614
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESC 505
+S +T GL HL PL L+ L L SC
Sbjct: 615 LSRYNLTDDGLAHLTPLTTLQYLDLSSC 642
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 230/447 (51%), Gaps = 64/447 (14%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S +TD GL HL + LQ L N+C ++D GL HL L+ L
Sbjct: 260 ALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQ------- 312
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
LDL C + GL +L LM L+ L++ WC +TD+ +
Sbjct: 313 ------------------HLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAH 354
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ LT L+ L +S C +TD+G+A+L TSL L
Sbjct: 355 LTSLTGLQHLDLSNCKNLTDAGLAHL--------------------------TSLMALQH 388
Query: 235 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITD 292
LNL C +T A L L+ L +L +LNL+R L+ G + + L+ L+L G ++ D
Sbjct: 389 LNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLID 448
Query: 293 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLT 350
L HL+ L L+ LNL C + D GL +L+ L L+ L LS Q + +GL HL L
Sbjct: 449 AGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLV 508
Query: 351 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FG 407
L+ ++LS ++D L L L +L+ LNL ++TD GLA LTSL L HL+L +
Sbjct: 509 ALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWC 568
Query: 408 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
++TD+G A+L+ L+ L++ LTD G+ H++ L +L LNLS+ NLTD L
Sbjct: 569 LKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLRPLVALQHLNLSR-YNLTDDGLAH 627
Query: 467 ISGLTGLVSLNVSN-SRITSAGLRHLK 492
++ LT L L++S+ +T AGL H K
Sbjct: 628 LTPLTTLQYLDLSSCYNLTDAGLAHFK 654
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 147/422 (34%), Positives = 217/422 (51%), Gaps = 16/422 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL LQ LD + C +++D GL HL L+ L L +T G+
Sbjct: 247 ITDAGLAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLT 306
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L LM L+ L++ WC +TD+ + L+ LT L+ L +
Sbjct: 307 LLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDL 366
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
S C +TD+G+A+L L ++ + C + H LT L L LNL +T A
Sbjct: 367 SNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAH--LTPLTALQHLNLSRYNLTYA 424
Query: 246 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTN 303
L L++L L +L+L+ +L D G + +L+ LNL G ++TD L HL L
Sbjct: 425 GLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKA 484
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG 361
L++L L C + GL +L L L+ L+LS+ + +GL HL L L+ +NL TG
Sbjct: 485 LQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNL--TG 542
Query: 362 ---ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAA 416
++D L L L +L+ LNL ++TD GLA L L L HLDL +TD G
Sbjct: 543 CWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLT 602
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
+LR L+ L + LTD G+ H+ L++L L+LS NLTD L + ++L
Sbjct: 603 HLRPLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTDAGLAHFKTVAASLNL 662
Query: 477 NV 478
+
Sbjct: 663 KI 664
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 129/401 (32%), Positives = 197/401 (49%), Gaps = 61/401 (15%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DLS ++TD+GL HL LQ LD ++C++++D GL HL L+ L
Sbjct: 309 TGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQ------ 362
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
LDL C + GL +L LM L+ LN+ WC +TD+ +
Sbjct: 363 -------------------HLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLA 403
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ LT L+ L +S +T +G+A+ LTSL L
Sbjct: 404 HLTPLTALQHLNLSRYNLTYAGLAH--------------------------LTSLTGLQH 437
Query: 235 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEIT 291
L+L G + A L L L +L +LNL C +L+D G S + +L+ L L + +T
Sbjct: 438 LDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNLT 497
Query: 292 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 349
L HLK L L+ L+L +C + D GL +L L L+ L L+ ++ +GL HL+ L
Sbjct: 498 GAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTSL 557
Query: 350 TNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG 407
L+ +NLS+ ++D L L L +L+ L+L + +TD GL L L L HL+L
Sbjct: 558 MALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLRPLVALQHLNLSR 617
Query: 408 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 447
+TD G A+L L+ L++ LTDAG+ H K +++
Sbjct: 618 YNLTDDGLAHLTPLTTLQYLDLSSCYNLTDAGLAHFKTVAA 658
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 182/347 (52%), Gaps = 57/347 (16%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
+TD+ + L NLK L +C +TD+G+A+L L
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPL----------------------- 233
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL 285
TSLQ+L L L C +T A L L+ L +L +L+L++C +L+DDG + + +L+ L L
Sbjct: 234 TSLQRLNLSKL-WC-ITDAGLAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGL 291
Query: 286 GFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSG 342
+ E +TD L HL LT L+ L+L +C + D GL +LT L L+ L+LS ++ +G
Sbjct: 292 NYCENLTDAGLAHLTLLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAG 351
Query: 343 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 400
L HL+ LT L+ ++LS ++D L L L +L+ LNL ++TD GLA LT LT L
Sbjct: 352 LAHLTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTAL 411
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNL 459
HL+L +T +G A+L + L+ L++ G L DAG+ H++ L +L LNL+ L
Sbjct: 412 QHLNLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKL 471
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
TD AGL HL PLK L++L L C+
Sbjct: 472 TD------------------------AGLAHLSPLKALQTLGLSWCQ 494
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 140/253 (55%), Gaps = 7/253 (2%)
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 318
N L+D +LK+L+ ITD L HL LT+L+ LNL I D G
Sbjct: 192 FNNIYLTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAG 251
Query: 319 LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
L +LT L L+ L+LS +++ GL HL+ LT L+ + L++ ++D L L L+ L
Sbjct: 252 LAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGL 311
Query: 377 KSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GG 433
+ L+L + + +TD GLA LTSL L HLDL + ++TD+G A+L + L+ L++
Sbjct: 312 QHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKN 371
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
LTDAG+ H+ L +L LNLS LTD L ++ LT L LN+S +T AGL HL
Sbjct: 372 LTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTS 431
Query: 494 LKNLRSLTLESCK 506
L L+ L L +
Sbjct: 432 LTGLQHLDLSGSR 444
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 136/240 (56%), Gaps = 9/240 (3%)
Query: 287 FNEI--TDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSG 342
FN I TD L+ LK NL+ L+ +C I D GL +LT L +L+ L LS + +G
Sbjct: 192 FNNIYLTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAG 251
Query: 343 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 400
L HL+ L L+ ++LS + ++D L L L++L+ L L+ +TD GLA LT LTGL
Sbjct: 252 LAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGL 311
Query: 401 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCN 458
HLDL + +TD+G A+L + L+ L++ LTDAG+ H+ L+ L L+LS N
Sbjct: 312 QHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKN 371
Query: 459 LTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
LTD L ++ L L LN+S ++T AGL HL PL L+ L L +T + L S
Sbjct: 372 LTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTS 431
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++L+G +TD+GL HL LQ L+ ++C++++D GL HL+ L L L
Sbjct: 534 ALQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNC 593
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N +T +G+ L+ L L+L R GL +L L L+ L++ C +TD
Sbjct: 594 NNLTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTD------ 647
Query: 177 SGLTNLKSLQIS 188
+GL + K++ S
Sbjct: 648 AGLAHFKTVAAS 659
>gi|149174278|ref|ZP_01852905.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148846823|gb|EDL61159.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1815
Score = 195 bits (495), Expect = 6e-47, Method: Composition-based stats.
Identities = 159/484 (32%), Positives = 237/484 (48%), Gaps = 30/484 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S SL ++ + + +++SG+ LKD L+ L F QI GL HL+ L NL L
Sbjct: 1328 SNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFT-NTQIDGVGLGHLKDLKNLKILGL 1386
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +I+ ++ GL L+ L L C GL LK L L+ L++ ITD +
Sbjct: 1387 E-STSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLD-STPITDEGL 1444
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIF------ILCS---MIIRLFCLH 223
K LSGL L++L++ +KVT GIA L K L ++ I+ S M R
Sbjct: 1445 KHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEW 1504
Query: 224 VFLTSLQKLTLLNL----EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
V L E P +S+S L D ++ +K+ +
Sbjct: 1505 VIGMGGGIGIGFKLNYKIEELPTEPVIFNSVS---------LKNASFEDHDLQRLAKLKT 1555
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
LK L L I+D L +L+ + NLE + LD I DEGL++L GL NL+ L LS T++
Sbjct: 1556 LKYLFLESTSISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKIT 1615
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT 398
GL HL L L +I+++ I++ ++ + L L SLN+ Q+ DTGL + LT
Sbjct: 1616 GEGLGHLKDLPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLT 1675
Query: 399 GLTHL-DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
L L +ITD G +L+ K L SL + G+T G++ + SL+ L+L+ NC
Sbjct: 1676 KLEKLFAHLVPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLSKLDLT-NC 1734
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+TD LE + L L L + + ++ AGL+HL LK L +L L KVT+ I LQ
Sbjct: 1735 KITDSGLEHLQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVTSQGIADLQ- 1793
Query: 518 RDLP 521
+ LP
Sbjct: 1794 KALP 1797
Score = 158 bits (399), Expect = 7e-36, Method: Composition-based stats.
Identities = 152/511 (29%), Positives = 235/511 (45%), Gaps = 82/511 (16%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++L + V+D+GL +LKD N SL QI+D G +L + +LT+L + +
Sbjct: 1285 TLPKLNLENTLVSDTGLQYLKDIPLNYISL---IGTQITDKGFGYLSNMPSLTTL-YVGS 1340
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AI+ G++ + L KL T+I G GL +LK L L+ L ++ I+D D++
Sbjct: 1341 TAISNSGVEQLKDMKQLEKLSFTN-TQIDGVGLGHLKDLKNLKILGLE-STSISDVDLQH 1398
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L GL L L +S K+ DSG+AYLK L+ L +L
Sbjct: 1399 LHGLKILIVLGLSNCKIADSGLAYLK--------------------------DLKNLKVL 1432
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKV------------ 282
+L+ P+T L LS L L L L + +++ G K + + K+
Sbjct: 1433 SLDSTPITDEGLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTS 1492
Query: 283 -------------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
LN E+ E ++ S++L + D
Sbjct: 1493 DSPMTDREIAEWVIGMGGGIGIGFKLNYKIEELPTEPVI-------FNSVSLKNASFEDH 1545
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
L L L LK L L T + +GL++L + NLE I L +T I+D L L GL +L+
Sbjct: 1546 DLQRLAKLKTLKYLFLESTSISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLR 1605
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC-GGGLTD 436
L L +IT GL L L L +D+ A IT+SG + + K L SL I + D
Sbjct: 1606 VLRLSKTKITGEGLGHLKDLPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDD 1665
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
G+ +I+ L+ L L +TD+ L+ + G+ L SL +S++ IT+ GL L ++
Sbjct: 1666 TGLGYIEGLTKLEKLFAHLVPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHES 1725
Query: 497 LRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
L L L +CK+T + ++ LQ DL NL R
Sbjct: 1726 LSKLDLTNCKITDSGLEHLQ--DLKNLRDLR 1754
Score = 122 bits (305), Expect = 6e-25, Method: Composition-based stats.
Identities = 105/390 (26%), Positives = 175/390 (44%), Gaps = 37/390 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+ D D+K L+GL L L + + V+D+G+ YLK + ++ + I + + F +L+
Sbjct: 1272 VKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDIPLNYISLIGTQITDKGFG---YLS 1328
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
++ LT L + ++ + ++ L + L L+ Q+ G + +LK+L L
Sbjct: 1329 NMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNLKILGLES 1388
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
I+D L HL GL L L L +C I D GL L L NLK L L T + GL+HLS
Sbjct: 1389 TSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDEGLKHLS 1448
Query: 348 GLTNLESINLSFTGISD---GSLR------KLAGLSSLKSLNLDARQITDTGLAAL---- 394
GL L+++ L T ++ SL+ K+ K + +TD +A
Sbjct: 1449 GLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEWVIGM 1508
Query: 395 ------------------TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
T + L A D L K L+ L + ++D
Sbjct: 1509 GGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLESTSISD 1568
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
G+++++ + +L + L N+TD+ L + GL L L +S ++IT GL HLK L
Sbjct: 1569 TGLQYLRQMQNLEEIFLDYT-NITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKDLPR 1627
Query: 497 LRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
L ++ + +T + +K + DL L S
Sbjct: 1628 LHTIDVNRAAITNSGMKAMG--DLKQLTSL 1655
>gi|46446666|ref|YP_008031.1| hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400307|emb|CAF23756.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 734
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 247/460 (53%), Gaps = 13/460 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL HL + LQ LD + C +++D GL HL L+ L L +++T G+
Sbjct: 262 VTDAGLAHLTPLTTLQYLDLSDCEKLTDDGLAHLTPLTGLQHLDLSWCSSLTDAGLAHLT 321
Query: 129 GLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L+L RC + GL +L L L+ LN+ C +TD+ + L LT L+ L +
Sbjct: 322 PLTALQHLNLNRCEYLKDAGLAHLTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNL 381
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA 244
S C K+TD+G+A+L L ++ + C+ + H LT L L L+L C T
Sbjct: 382 SECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDAGLAH--LTPLTALQHLDLSDCQNFTD 439
Query: 245 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLT 302
A L L++L L YLNL+ + L+D G + + +L+ LNL + TD L HL LT
Sbjct: 440 AGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLT 499
Query: 303 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT 360
L+ L+L C + D+GL +L L L+ L LS ++ +GL HL+ LT L+ ++LS
Sbjct: 500 ALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLSCC 559
Query: 361 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 418
I+D L L L+ L+ L L Q+TD GLA LT LT L +L L R+TD+G A+L
Sbjct: 560 EITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLTPLTTLQYLYLGSCNRLTDAGLAHL 619
Query: 419 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L+ L + LTD G+ H+ L++L L L++ LTD L + L L L+
Sbjct: 620 APLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLD 679
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+S IT AGL HL L L+ L L ++T + ++R ++
Sbjct: 680 LSYCEITDAGLAHLTHLMALQRLDLYGREITDDGLERFET 719
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 149/426 (34%), Positives = 224/426 (52%), Gaps = 37/426 (8%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DLS S +TD+GL HL + LQ L+ N C + D GL HL L+ L L+ R
Sbjct: 299 TGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAHLTPLTGLQHLNLNR 358
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ L L L+L C ++ GL +L L L+ L++ CN +TD+ +
Sbjct: 359 CKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDAGLA 418
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKL 232
L+ LT L+ L +S C TD+G+A+L S++ + ++ S L + LT L L
Sbjct: 419 HLTPLTALQHLDLSDCQNFTDAGLAHLT--SLTGLQYLNLSEYKNLTDAGLAHLTPLTAL 476
Query: 233 TLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NE 289
LNL C T L L+ L +L +L+L+ C+ L+DDG + + L+ L L + ++
Sbjct: 477 QHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCDK 536
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSG 348
+TD L HL LT L+ L+L C I D GL +LT L L+ L L Q+ +GL HL+
Sbjct: 537 LTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLTP 596
Query: 349 LTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHL--- 403
LT L+ + L S ++D L LA L++L+ L L D R++TDTGLA LT LT L HL
Sbjct: 597 LTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLN 656
Query: 404 ----------------------DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
DL ITD+G A+L + L+ L++ G +TD G++
Sbjct: 657 RCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGREITDDGLER 716
Query: 442 IKDLSS 447
+ L++
Sbjct: 717 FETLAA 722
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 199/371 (53%), Gaps = 12/371 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+TD+GL HLK + LQ L+ + C +++D GL HL L+ L L R N++T G+
Sbjct: 361 DLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDAGLAHL 420
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C GL +L L L+ LN+ +TD+ + L+ LT L+ L
Sbjct: 421 TPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTALQHLN 480
Query: 187 I-SCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVF-LTSLQKLTLLNLEGC-PV 242
+ +C K TD+G+A+L L ++ + C + H+ LT LQ+L L C +
Sbjct: 481 LCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLV---LSWCDKL 537
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 301
T A L L+ L +L YL+L+ C+++D G + + L+ L L + ++TD L HL L
Sbjct: 538 TDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLTPL 597
Query: 302 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 359
T L+ L L SC + D GL +L L L+ L L+D ++ +GL HL+ LT L+ + L+
Sbjct: 598 TTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNR 657
Query: 360 -TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
++D L L L++L+ L+L +ITD GLA LT L L LDL+G ITD G
Sbjct: 658 CEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGREITDDGLERF 717
Query: 419 RNFKNLRSLEI 429
+LEI
Sbjct: 718 ETLAASFNLEI 728
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 199/375 (53%), Gaps = 36/375 (9%)
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
R T H L+ LK L+ L+ K C +TD+ + L+ LT L+ L +S C K+TD G+A
Sbjct: 236 RLTDAH--LLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDCEKLTDDGLA 293
Query: 199 YLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSL 256
+L L+ + + CS + H LT L L LNL C + A L L+ L L
Sbjct: 294 HLTPLTGLQHLDLSWCSSLTDAGLAH--LTPLTALQHLNLNRCEYLKDAGLAHLTPLTGL 351
Query: 257 FYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 313
+LNLNRC+ L+D G + +L+ LNL ++TD L HL LT L+ L+L C
Sbjct: 352 QHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNS 411
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA 371
+ D GL +LT L L+ L+LSD Q +GL HL+ LT L+ +NLS + ++D L L
Sbjct: 412 LTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLT 471
Query: 372 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
L++L+ LNL + R+ TD GLA LT LT L HLDL ++ +N
Sbjct: 472 PLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDL----------SHCKN---------- 511
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
LTD G+ H+ L+ L L LS LTD L ++ LT L L++S IT AGL H
Sbjct: 512 ---LTDDGLAHLAPLTGLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAH 568
Query: 491 LKPLKNLRSLTLESC 505
L PL L+ L L C
Sbjct: 569 LTPLTGLQHLVLVYC 583
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 146/387 (37%), Positives = 202/387 (52%), Gaps = 40/387 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFIL-C 213
K+E+LN +TD+ + L NLK L C VTD+G+A+L L+ + + C
Sbjct: 225 KIETLNFSENARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDC 284
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 271
+ H LT L L L+L C +T A L L+ L +L +LNLNRC+ L D G
Sbjct: 285 EKLTDDGLAH--LTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGL 342
Query: 272 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC------------------ 312
+ + L+ LNL ++TD L HLK LT L+ LNL C
Sbjct: 343 AHLTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQ 402
Query: 313 --------GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGI 362
+ D GL +LT L L+ L+LSD Q +GL HL+ LT L+ +NLS + +
Sbjct: 403 HLDLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNL 462
Query: 363 SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRN 420
+D L L L++L+ LNL + R+ TD GLA LT LT L HLDL + +TD G A+L
Sbjct: 463 TDAGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAP 522
Query: 421 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN-V 478
L+ L + LTDAG+ H+ L++L L+LS C +TD L ++ LTGL L V
Sbjct: 523 LTGLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLS-CCEITDAGLAHLTPLTGLQHLVLV 581
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESC 505
++T AGL HL PL L+ L L SC
Sbjct: 582 YCWQLTDAGLAHLTPLTTLQYLYLGSC 608
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 8/164 (4%)
Query: 48 WMDVIASQG-------SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
W D + G ++L +DLS ++TD+GL HL + LQ L +C Q++D GL
Sbjct: 533 WCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLA 592
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
HL L+ L L N +T G+ A L L L L C ++ GL +L L L+
Sbjct: 593 HLTPLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQH 652
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L + C +TD + L L L+ L +S ++TD+G+A+L L
Sbjct: 653 LTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHL 696
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 408 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
AR+TD+ L+N KNL+ L G+TDAG+ H+ L++L L+LS LTD L
Sbjct: 235 ARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDCEKLTDDGLAH 294
Query: 467 ISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 507
++ LTGL L++S S +T AGL HL PL L+ L L C+
Sbjct: 295 LTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEY 336
>gi|46447549|ref|YP_008914.1| hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401190|emb|CAF24639.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 683
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 168/466 (36%), Positives = 251/466 (53%), Gaps = 39/466 (8%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK+C NL+ L C ++D GL HL L+ L L+ +T G+
Sbjct: 233 ENAHLTDAHLLVLKNCKNLKVLYLQGCRNLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGL 292
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L L LDL C + GL +L L L+ L+++ C ITD+ + L+ LT L+
Sbjct: 293 AHLAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHLAPLTALQ 352
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-P 241
+L +S C +TD+G+AYL L T+LQ L NL C
Sbjct: 353 NLDLSDCGHLTDAGLAYLTPL-----------------------TALQHL---NLYFCFN 386
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 299
+T A L L L +L L L++C L+D G + + +L+ LNL ++TD L HL
Sbjct: 387 LTDAGLVHLRPLTALQTLGLSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDAGLAHLT 446
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
LT L+ LNL C + D+GL +L L L+ L LS ++ +GL HL+ LT L+ +NL
Sbjct: 447 PLTALQHLNLSYCENLTDDGLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTALQHLNL 506
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 414
S ++D L +L L++L+ L+L +TD GLA LT L+GL HL L + +TD+G
Sbjct: 507 SRCYKLTDAGLARLTPLTALQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCKYLTDAG 566
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+L L+ L + LTD G+ H+ L++L L+LS+ +LTD L ++ LTGL
Sbjct: 567 LAHLTLLTALQYLALANCKNLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHLTPLTGL 626
Query: 474 VSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 517
LN+S R +T AGL HL PL L+ L L C ++T + + R ++
Sbjct: 627 QHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQCSRLTDDGLDRFKT 672
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 152/425 (35%), Positives = 224/425 (52%), Gaps = 18/425 (4%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C ++D GL HL L+ L L +T G+
Sbjct: 261 NLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHL 320
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C I GL +L L L++L++ C +TD+ + L+ LT L+ L
Sbjct: 321 TPLTALQHLDLRVCKNITDAGLAHLAPLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLN 380
Query: 187 IS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVT 243
+ C +TD+G+ +L+ L ++ ++ C + H LT L L LNL C +T
Sbjct: 381 LYFCFNLTDAGLVHLRPLTALQTLGLSQCWNLTDTGLAH--LTPLTALQHLNLSRCYKLT 438
Query: 244 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 301
A L L+ L +L +LNL+ C+ L+DDG + + +L+ L L ++TD L HL L
Sbjct: 439 DAGLAHLTPLTALQHLNLSYCENLTDDGLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPL 498
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRHLSGLTNLESIN 356
T L+ LNL C + D GL LT L L+ L+L T G + L LSGL +L N
Sbjct: 499 TALQHLNLSRCYKLTDAGLARLTPLTALQHLDLKYCINLTDAGLARLTPLSGLQHLALTN 558
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 414
+ ++D L L L++L+ L L + + +TD GLA LT LT L HLDL R +TD+G
Sbjct: 559 CKY--LTDAGLAHLTLLTALQYLALANCKNLTDVGLAHLTPLTALQHLDLSECRHLTDAG 616
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+L L+ L + LTDAG+ H+ LS L L LSQ LTD L+ L
Sbjct: 617 LAHLTPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQCSRLTDDGLDRFKTLATS 676
Query: 474 VSLNV 478
++L +
Sbjct: 677 LNLEI 681
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L +DLS +TD+GL HL + LQ L+ ++C ++D GL HL LS L L+ +
Sbjct: 599 TALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQ 658
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G+ F L + L++ R
Sbjct: 659 CSRLTDDGLDRFKTLATSLNLEIVR 683
>gi|46446659|ref|YP_008024.1| hypothetical protein pc1025 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400300|emb|CAF23749.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 695
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 165/446 (36%), Positives = 229/446 (51%), Gaps = 58/446 (13%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L+ L L+ + +T G+ A
Sbjct: 238 LTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLA 297
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L KL+L R ++ GL +LK L L+ L++ +C +TD + L LT L+ L +
Sbjct: 298 PLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDL 357
Query: 188 S-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
C K+TD G+ +L+ L T+LQ+L NL C T A
Sbjct: 358 RYCEKLTDDGLVHLRPL-----------------------TALQRL---NLSNCWHTGAG 391
Query: 247 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 304
L LS L L +LNL C L+D G + L+ LNL + +E+TD LVHLK LT L
Sbjct: 392 LSHLSPLTGLQHLNLYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGL 451
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 363
+ LNL +C NLT +GL HL LT L+ +NLS+ ++
Sbjct: 452 QHLNLSNCN-------NLT----------------DAGLVHLKFLTGLQHLNLSYCDELT 488
Query: 364 DGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNF 421
D L L L+ L+ LNL + +TD GLA LT LTGL HLDL + +++TD G A+L+
Sbjct: 489 DAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDDGLAHLKPL 548
Query: 422 KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
L+ L + LTDAG+ H+K L+ L LNLS NLTD L + L L L +
Sbjct: 549 TALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMPLMALRHLELLG 608
Query: 481 -SRITSAGLRHLKPLKNLRSLTLESC 505
+T AGL HL PL L+ L L C
Sbjct: 609 CENLTDAGLVHLTPLTALQHLNLSHC 634
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 203/368 (55%), Gaps = 14/368 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+GL HLK + LQ LD +FC ++D GL HLR L+ L L R +T G+
Sbjct: 311 NQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYCEKLTDDGLVH 370
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L +L+L C GL +L L L+ LN+ C +TD+ + L LT L+ L
Sbjct: 371 LRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLVHLKLLTGLQHLN 430
Query: 187 IS-CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGC-PV 242
+S C ++TD+G+ +LK L+ + + C+ + +H+ FLT LQ LNL C +
Sbjct: 431 LSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQH---LNLSYCDEL 487
Query: 243 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 300
T A L L L L +LNL+ C L+D G + + L+ L+L + +++TD+ L HLK
Sbjct: 488 TDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDDGLAHLKP 547
Query: 301 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESIN-L 357
LT L+ LNL +C + D GLV+L L L+ L LSD + + GL HL L L + L
Sbjct: 548 LTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMPLMALRHLELL 607
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 415
++D L L L++L+ LNL +TD GLA LTSLTGL HL+L G +TD+G
Sbjct: 608 GCENLTDAGLVHLTPLTALQHLNLSHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGL 667
Query: 416 AYLRNFKN 423
A + N
Sbjct: 668 ARFKTVAN 675
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 202/372 (54%), Gaps = 23/372 (6%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCS 214
K+E LN +TD+ + L NLK L + C +TD G+A+L L+ + + S
Sbjct: 226 KIEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSAS 285
Query: 215 M-IIRLFCLHVF-LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 271
+ +H+ LT+LQKL L +T A L L L +L L+L+ C+ L+DDG
Sbjct: 286 YNLTDAGLVHLAPLTALQKLNLGRYNQ--LTDAGLAHLKPLTALQRLDLSFCEDLTDDGL 343
Query: 272 EKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLCN 327
+ +L+ L+L + E +TD+ LVHL+ LT L+ LNL +C G G L LTGL +
Sbjct: 344 AHLRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQH 403
Query: 328 L---KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-D 382
L +C+ L+D +GL HL LT L+ +NLS+ ++D L L L+ L+ LNL +
Sbjct: 404 LNLYECINLTD-----AGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSN 458
Query: 383 ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 440
+TD GL L LTGL HL+L + +TD+G +L+ L+ L + LTDAG+
Sbjct: 459 CNNLTDAGLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLA 518
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRS 499
H+ L+ L L+LS LTD L + LT L LN+SN R +T AGL HLK L L+
Sbjct: 519 HLTPLTGLQHLDLSYCSKLTDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQH 578
Query: 500 LTLESCKVTAND 511
L L K +D
Sbjct: 579 LNLSDYKNLTDD 590
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 187/345 (54%), Gaps = 16/345 (4%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+S L N S ++ + ++GL+ S+ ++ + ++ L + + L +L
Sbjct: 203 VSALLNQTSQLAEFERIINHFSKKIEGLNFSNNRYLTDAHLL-------ILKNCKNLKVL 255
Query: 236 NLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITD 292
+LE C +T L L+ L +L YLNL+ L+D G + + +L+ LNLG +N++TD
Sbjct: 256 HLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLAPLTALQKLNLGRYNQLTD 315
Query: 293 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 350
L HLK LT L+ L+L C + D+GL +L L L+ L+L ++ GL HL LT
Sbjct: 316 AGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYCEKLTDDGLVHLRPLT 375
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGA 408
L+ +NLS + L L+ L+ L+ LNL + +TD GL L LTGL HL+L +
Sbjct: 376 ALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLVHLKLLTGLQHLNLSYCD 435
Query: 409 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+TD+G +L+ L+ L + LTDAG+ H+K L+ L LNLS LTD L +
Sbjct: 436 ELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQHLNLSYCDELTDAGLVHL 495
Query: 468 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
LTGL LN+SN + +T AGL HL PL L+ L L C +D
Sbjct: 496 KLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDD 540
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DLS S +TD GL HLK + LQ L+ + C ++D GL HL+ L+ L L+
Sbjct: 524 TGLQHLDLSYCSKLTDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSD 583
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ L+ L L+L C + GLV+L L L+ LN+ C+ +TD+ +
Sbjct: 584 YKNLTDDGLIHLMPLMALRHLELLGCENLTDAGLVHLTPLTALQHLNLSHCDDLTDAGLA 643
Query: 175 PLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
L+ LT L+ L++ C +TD+G+A K ++ S + I ++R
Sbjct: 644 HLTSLTGLQHLELLGCENLTDAGLARFKTVANSLYLIIKRFFVLR 688
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 33 LQDLCLGQYPGVND----KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
LQ L L Y + D M ++A + LL + ++TD+GL+HL + LQ L+
Sbjct: 576 LQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCE----NLTDAGLVHLTPLTALQHLNL 631
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ C ++D GL HL L+ L L +T G+ F + N + L ++R
Sbjct: 632 SHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARFKTVANSLYLIIKR 683
>gi|348682865|gb|EGZ22681.1| hypothetical protein PHYSODRAFT_491927 [Phytophthora sojae]
Length = 648
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 174/550 (31%), Positives = 247/550 (44%), Gaps = 69/550 (12%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP +++ + L L + +A L + L GV D W D
Sbjct: 142 LPPELAASVLQWLKRHYVLDKPQFQALAPFLLLEWSLADLQGVEDSWFD----------- 190
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V + L LK S+D + CI + G E + L L
Sbjct: 191 ------GVPQTTLQQLK------SIDVSGCIHLHQLGAEWGYATTKLPELL--------- 229
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+F G L K +E L+ KL +LN+ C + D +K LS L
Sbjct: 230 --AASFQGCTGLTKESIEM----------LRFSTKLAALNLSGCVNVDDKSLKALSELEQ 277
Query: 182 LKSLQ-ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
L SLQ + C K+TD G+ YL ++ + I + L F KL L++ C
Sbjct: 278 LTSLQLVGCRKLTDKGVKYLAKMAKLEKLRIARCRKLTDAALEDFAMMFPKLRELDVANC 337
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG-----------------CEKFSKIGS--- 279
++ L + + SL L + CQ + DDG C K I +
Sbjct: 338 RLSEKALQYIGQIKSLEVLVIRGCQDICDDGMSSLSGLANLKYFDARHCSKIHSIPTEWT 397
Query: 280 -LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L+VL LG+ + L+ LTNL L L C I G ++ L +L+ LEL +T +
Sbjct: 398 QLEVLLLGYTAFAESDAAVLQYLTNLHELELRKCRIMKRGFQFISRLTHLERLELGETAL 457
Query: 339 GSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
SGL + + +L+++N+S T ISD LA L L+ L LD IT+ LA L+ L
Sbjct: 458 TDSGLLEICNSAKSLKALNISNTEISDNGAAGLAKLKELRILRLDTPGITNRALANLSFL 517
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
L LDLFGA ITD+G +L L+ L ICGG + D GV I L+SLT LNLSQN
Sbjct: 518 ARLERLDLFGANITDNGLMHLVPLHKLQELSICGGNIGDRGVGLISKLTSLTSLNLSQNR 577
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
N+ K+L + LTGL LN+SN+ I++ LRHL LK L+SL++ C ++ I L+
Sbjct: 578 NIRTKSLFYLRALTGLRCLNLSNTGISALSLRHLSSLKELQSLSVYGCSLSQGHIDVLRE 637
Query: 518 RDLPNLVSFR 527
LP L R
Sbjct: 638 -ILPELKCLR 646
>gi|306012373|gb|ADM75240.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012405|gb|ADM75256.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 114/135 (84%)
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
LSQN +LTD LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 513 KRLQSRDLPNLVSFR 527
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 378 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
SLNL +TD L ++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 437 AGVKHIKDLSSLTLLNLS 454
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 309 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
L + + D L ++G+ L L +S+T+V ++GL+HL L NL S++L ++ +
Sbjct: 61 LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 368 RKL--AGLSSLKSLNLD 382
RKL L +L + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T ++ +G+ LV L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ LT L L + +++TD G + CL F +KL L
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTS----------------------CLRYF----KKLQSL 35
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L G +T A + ++ L S+ LNL++ L+D E S + +L LN+ +T+
Sbjct: 36 ELCGGSITDAGVKNIKDLTSMMSLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAG 95
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLEL 333
L HL+ L NL SL+L +C + + L T L NL + L
Sbjct: 96 LQHLRPLKNLTSLSLQACKVTWPEIRKLQATALPNLAGVRL 136
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L
Sbjct: 57 MSLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPL 102
>gi|306012335|gb|ADM75221.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012337|gb|ADM75222.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012341|gb|ADM75224.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012343|gb|ADM75225.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012345|gb|ADM75226.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012347|gb|ADM75227.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012349|gb|ADM75228.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012353|gb|ADM75230.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012355|gb|ADM75231.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012357|gb|ADM75232.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012361|gb|ADM75234.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012363|gb|ADM75235.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012365|gb|ADM75236.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012367|gb|ADM75237.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012369|gb|ADM75238.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012375|gb|ADM75241.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012377|gb|ADM75242.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012379|gb|ADM75243.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012383|gb|ADM75245.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012385|gb|ADM75246.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012387|gb|ADM75247.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012389|gb|ADM75248.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012393|gb|ADM75250.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012399|gb|ADM75253.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012407|gb|ADM75257.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012409|gb|ADM75258.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012411|gb|ADM75259.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012413|gb|ADM75260.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/135 (67%), Positives = 114/135 (84%)
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
LSQN +LTD LE ISG+T L+SLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 513 KRLQSRDLPNLVSFR 527
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 378 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
SLNL +TD L ++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 437 AGVKHIKDLSSLTLLNLS 454
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 3/137 (2%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 309 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
L + + D L ++G+ L L +S+T+V ++GL+HL L NL S++L ++ +
Sbjct: 61 LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 368 RKL--AGLSSLKSLNLD 382
RKL L +L + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T ++ +G+ L+ L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ LT L L + +++TD G + CL F +KL L
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTS----------------------CLRYF----KKLQSL 35
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L G +T A + ++ L S+ LNL++ L+D E S + +L LN+ +T+
Sbjct: 36 ELCGGSITDAGVKNIKDLTSMMSLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAG 95
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLEL 333
L HL+ L NL SL+L +C + + L T L NL + L
Sbjct: 96 LQHLRPLKNLTSLSLQACKVTWPEIRKLQATALPNLAGVRL 136
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L
Sbjct: 57 MSLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPL 102
>gi|406836026|ref|ZP_11095620.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 586
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 153/444 (34%), Positives = 231/444 (52%), Gaps = 7/444 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++DLS + +TDS L L NL +++ + +I GL L GL NL +L ++
Sbjct: 148 NLTAIDLSETAITDSALKPLSVLENLSTINLS-TTKIDGSGLADLSGLKNLKTLVLS-HS 205
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
IT + + A L NL L+L GL +L L L LN+ + + D+ + L+
Sbjct: 206 PITNEALAGVAALRNLTTLELWNTPISADGLKSLGTLTDLTKLNLGFT-SLDDTGLAELA 264
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
LTNLK+L + + VTD+G++ L + + + + + I V + + L L+L
Sbjct: 265 TLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLNDTQITDAGM--VAIARHKDLNELHL 322
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
EG +T L +L LG L L + + ++D G E+ + LK+L LG +++DE L
Sbjct: 323 EGTRLTDVGLRALKTLGELDVLQIGKTAVTDAGVEELAGFKHLKILRLGSTKVSDEGLKS 382
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L GL +L+SL L GI D G L L L L+L T V G+R L GL+NLE ++L
Sbjct: 383 LLGLEHLQSLGLGGTGITDVGAKQLASLTTLTGLDLDATAVTDEGVRELGGLSNLEYLSL 442
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
T ISD + L LK L L QI+D GL L L+ LT L L ++TD G
Sbjct: 443 ISTKISDDGVSGLGAFKKLKMLFLHNNQISDEGLKGLNDLSQLTTLYLSMTQVTDVGMKE 502
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L+N K+L+ L +C +TDAG+K + LS L +L + +N +TD LE ++ L L
Sbjct: 503 LKNLKHLKDLVLCDTQITDAGLKELTGLSELNVLVI-RNVAVTDACLEHLTSFKNLTHLC 561
Query: 478 VSNSRITSAGLRHLK-PLKNLRSL 500
+ R + AGL K + N+R L
Sbjct: 562 IDVHRFSEAGLNAFKTSMPNVRVL 585
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 246/486 (50%), Gaps = 27/486 (5%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
ND+++ +I+ G L S+DLS + +TD GL L+ + L SL+ + ISD GL L
Sbjct: 64 NDRYVHLISPLGR-LESLDLSNTQITDLGLKELRKLNALTSLNLRYT-AISDVGLSELSE 121
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+S L +L+ I+ G+ L NL +DL L L L L ++N+
Sbjct: 122 MSKLDTLNLSATQ-ISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLENLSTINLST 180
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLS--------ISSVIFILC 213
I S + LSGL NLK+L +S S +T+ +G+A L+ L+ IS+
Sbjct: 181 TK-IDGSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTPISADGLKSL 239
Query: 214 SMIIRLFCLHVFLTSLQ-----------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
+ L L++ TSL L LNL VT L SLS + +L LNLN
Sbjct: 240 GTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLN 299
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
Q++D G ++ L L+L +TD L LK L L+ L + + D G+ L
Sbjct: 300 DTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDAGVEEL 359
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
G +LK L L T+V GL+ L GL +L+S+ L TGI+D ++LA L++L L+LD
Sbjct: 360 AGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLTGLDLD 419
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
A +TD G+ L L+ L +L L +I+D G + L FK L+ L + ++D G+K +
Sbjct: 420 ATAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFLHNNQISDEGLKGL 479
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
DLS LT L LS +TD ++ + L L L + +++IT AGL+ L L L L +
Sbjct: 480 NDLSQLTTLYLSM-TQVTDVGMKELKNLKHLKDLVLCDTQITDAGLKELTGLSELNVLVI 538
Query: 503 ESCKVT 508
+ VT
Sbjct: 539 RNVAVT 544
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 192/346 (55%), Gaps = 11/346 (3%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF----LTSLQK 231
+S L L+SL +S +++TD G+ L+ L+ L S+ +R + L+ + K
Sbjct: 71 ISPLGRLESLDLSNTQITDLGLKELRKLNA------LTSLNLRYTAISDVGLSELSEMSK 124
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L LNL ++ A LD L AL +L ++L+ ++D + S + +L +NL +I
Sbjct: 125 LDTLNLSATQISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLENLSTINLSTTKID 184
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
L L GL NL++L L I +E L + L NL LEL +T + + GL+ L LT+
Sbjct: 185 GSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTPISADGLKSLGTLTD 244
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L +NL FT + D L +LA L++LK+LNL +TDTGL++L+ + LT+L+L +IT
Sbjct: 245 LTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLNDTQIT 304
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
D+G + K+L L + G LTD G++ +K L L +L + + +TD +E ++G
Sbjct: 305 DAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTA-VTDAGVEELAGFK 363
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L L + +++++ GL+ L L++L+SL L +T K+L S
Sbjct: 364 HLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLAS 409
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 202/431 (46%), Gaps = 50/431 (11%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
+ +SF N + + + L L LDL GL L+ L L SLN+++
Sbjct: 52 IVGISFAGNARFNDRYVHLISPLGRLESLDLSNTQITDLGLKELRKLNALTSLNLRYT-A 110
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I+D + LS ++ L +L +S ++++D+G+ L
Sbjct: 111 ISDVGLSELSEMSKLDTLNLSATQISDAGLDKL--------------------------L 144
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+L+ LT ++L +T + L LS L +L +NL+ ++ G S + +LK L L
Sbjct: 145 ALRNLTAIDLSETAITDSALKPLSVLENLSTINLSTTKIDGSGLADLSGLKNLKTLVLSH 204
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+ IT+E L + L NL +L L + I +GL +L L +L L L T + +GL L+
Sbjct: 205 SPITNEALAGVAALRNLTTLELWNTPISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELA 264
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
LTNL+++NL TG++D L L+ + +L +LNL+ QITD G+ A+ L L L G
Sbjct: 265 TLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLNDTQITDAGMVAIARHKDLNELHLEG 324
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------- 456
R+TD G L+ L L+I +TDAGV+ + L +L L
Sbjct: 325 TRLTDVGLRALKTLGELDVLQIGKTAVTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLL 384
Query: 457 ------------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+TD + ++ LT L L++ + +T G+R L L NL L+L S
Sbjct: 385 GLEHLQSLGLGGTGITDVGAKQLASLTTLTGLDLDATAVTDEGVRELGGLSNLEYLSLIS 444
Query: 505 CKVTANDIKRL 515
K++ + + L
Sbjct: 445 TKISDDGVSGL 455
>gi|306012339|gb|ADM75223.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012351|gb|ADM75229.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012359|gb|ADM75233.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012371|gb|ADM75239.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012381|gb|ADM75244.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012391|gb|ADM75249.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012395|gb|ADM75251.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012397|gb|ADM75252.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012401|gb|ADM75254.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012403|gb|ADM75255.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 114/135 (84%)
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
LSQN +LTD LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 513 KRLQSRDLPNLVSFR 527
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 378 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
SLNL +TD L +++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 437 AGVKHIKDLSSLTLLNLS 454
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+L++L L +L+L +++D G L+ L L ITD + ++K LT++ SLN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 309 L-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
L + + D L +++G+ L L +S+T+V ++GL+HL L NL S++L ++ +
Sbjct: 61 LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 368 RKL--AGLSSLKSLNLD 382
RKL L +L + LD
Sbjct: 121 RKLQATALPNLAGVRLD 137
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T +++ +G+ LV L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ LT L L + +++TD G + CL F +KL L
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTS----------------------CLRYF----KKLQSL 35
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L G +T A + ++ L S+ LNL++ L+D E S + +L LN+ +T+
Sbjct: 36 ELCGGSITDAGVKNIKDLTSMMSLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAG 95
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLEL 333
L HL+ L NL SL+L +C + + L T L NL + L
Sbjct: 96 LQHLRPLKNLTSLSLQACKVTWPEIRKLQATALPNLAGVRL 136
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L
Sbjct: 57 MSLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPL 102
>gi|46446377|ref|YP_007742.1| hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400018|emb|CAF23467.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 765
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 172/502 (34%), Positives = 259/502 (51%), Gaps = 41/502 (8%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
EL +S+ LT+ L A ++C L+ L L + D + + ++L +DLSG ++
Sbjct: 262 ELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPL-AALKHLDLSGCEL 320
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
TD GL+HL + LQ LD + C +D GL HL+ L L L+ +T G+
Sbjct: 321 TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKL 380
Query: 130 LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L+ L LDL C GL +LK L+ L+ LN+ +C +TD+ + L+ L L+ L ++
Sbjct: 381 LVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLN 440
Query: 189 -CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE-GCPVTAAC 246
C +TD+G+ +L TSL L LNL T A
Sbjct: 441 GCHNLTDAGLTHL--------------------------TSLVVLQYLNLSWNYNFTDAG 474
Query: 247 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
L L+ L +L +LNL+ C +D G + + +LK L+L E+TD+ L HLK L L+
Sbjct: 475 LAHLTPLMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQ 534
Query: 306 SLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG-I 362
LNL CG + D+GL +L L L+ L+LS ++ +GL HL L L+ +NLS G +
Sbjct: 535 HLNLSYCGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKL 594
Query: 363 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRN 420
+D L L L++L+ L+L ++T GLA L L L HL+L ++TD+G L
Sbjct: 595 TDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSP 654
Query: 421 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
L+ L++ G LTDAG+ ++ L +L L+LS NLTD L + L L L++S
Sbjct: 655 LMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLS 714
Query: 480 N-SRITSAGLRHLKPLKNLRSL 500
+ +T GL HL PL L+ L
Sbjct: 715 HCGNLTDDGLAHLSPLIALQHL 736
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 230/457 (50%), Gaps = 40/457 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+ L+ LK+C NL+ L+ C ++D GL HL L+ L
Sbjct: 269 AHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALK----------------- 311
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LDL C GLV+L L L+ L++ C TD+ + L L L+ L
Sbjct: 312 --------HLDLSGCELTDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLN 363
Query: 187 IS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGC-PV 242
+S C K+TD+G+A+LK L ++ + C H+ L +LQ LNL C +
Sbjct: 364 LSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQH---LNLSYCGNL 420
Query: 243 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKG 300
T A L L+ L +L +L+LN C L+D G + + L+ LNL +N TD L HL
Sbjct: 421 TDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTP 480
Query: 301 LTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
L L+ LNL CG D GL +LT L LK L+L ++ GL HL L L+ +NLS+
Sbjct: 481 LMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSY 540
Query: 360 TG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 416
G ++D L L L +L+ L+L ++T GLA L L L HL+L ++TD G
Sbjct: 541 CGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLV 600
Query: 417 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
L LR L++ G LT AG+ H+K L +L LNLS LTD L +S L L
Sbjct: 601 NLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQH 660
Query: 476 LNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
L++S+ +T AGL +L PL L+ L L C +D
Sbjct: 661 LDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDD 697
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 187/382 (48%), Gaps = 60/382 (15%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++TD+GL HL LQ L+ ++ +D GL HL L L L+
Sbjct: 433 ALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYC 492
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
T G+ L L LDL C GL +LK L+ L+ LN+ +C +TD + L
Sbjct: 493 GNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L L+ L +S C K+T +G+A+LK FL +LQ
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLK-----------------------FLVALQ----- 584
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDE 293
+LNL+ C +L+DDG + + +L+ L+L ++T
Sbjct: 585 ----------------------HLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGA 622
Query: 294 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTN 351
L HLK L L+ LNL CG + D GLVNL+ L L+ L+LS + +GL +LS L
Sbjct: 623 GLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMA 682
Query: 352 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA- 408
L+ ++LS G ++D L L L +L+ L+L +TD GLA L+ L L HLD
Sbjct: 683 LQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIALQHLDRSKYN 742
Query: 409 RITD-SGAAYLRNFKNLRSLEI 429
+TD SG A+L + +L+ L++
Sbjct: 743 NLTDGSGLAHLTSLVDLQHLDL 764
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 151/294 (51%), Gaps = 30/294 (10%)
Query: 230 QKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF- 287
+ L +LNL+ C +T A L L+ L +L +L+L+ C+L+DDG + + +L+ L+L
Sbjct: 283 ENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCELTDDGLVHLTPLAALQHLDLSHC 342
Query: 288 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRH 345
TD L HLK L L+ LNL CG + D GL +L L L+ L+LS + +GL H
Sbjct: 343 RNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAH 402
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L L L+ +NLS+ G +TD GLA LT L L HLDL
Sbjct: 403 LKLLVALQHLNLSYCG-----------------------NLTDAGLAHLTPLMALQHLDL 439
Query: 406 FGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
G +TD+G +L + L+ L + TDAG+ H+ L +L LNLS N TD
Sbjct: 440 NGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAG 499
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQ 516
L ++ L L L++ +T GL HLK L L+ L L C K+T + + L+
Sbjct: 500 LAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLK 553
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 159/299 (53%), Gaps = 35/299 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL + L+ LD C +++D GL HL+ L L L+ +T G+
Sbjct: 494 NFTDAGLAHLTSLAALKHLDLIGC-ELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ G GL +LK L+ L+ LN+ C +TD + L+ L L+ L
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLD 612
Query: 187 IS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTA 244
+S C K+T +G+A+LK FL +LQ L NL C +T
Sbjct: 613 LSHCGKLTGAGLAHLK-----------------------FLVALQHL---NLSHCGKLTD 646
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 302
A L +LS L +L +L+L+ C L+D G S + +L+ L+L +TD+ LV+LK L
Sbjct: 647 AGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLV 706
Query: 303 NLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLS 358
L+ L+L CG + D+GL +L+ L L+ L+ S SGL HL+ L +L+ ++LS
Sbjct: 707 ALQHLDLSHCGNLTDDGLAHLSPLIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS 765
>gi|301098037|ref|XP_002898112.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262105473|gb|EEY63525.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 167/539 (30%), Positives = 260/539 (48%), Gaps = 45/539 (8%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG-SSL 59
+LP +++ + L L + +A L + L + V D W D I + S+
Sbjct: 141 VLPPELALSVLQWLKQHYVLDKPQFQALTPLLLLEWNLADHQDVEDSWFDDIPEKTLESV 200
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S+D+SG C +LQ L S+ G H+ L L SF+ +
Sbjct: 201 KSIDVSG-------------CIHLQQLG-------SEWG-RHVNRLPELLVASFQGCTGL 239
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ + ++ L L+L C + V +L+ L L+SL + C +TD +K L
Sbjct: 240 SKETIEMLKLSTKLTTLNLSGCANVDDKCVKSLRQLEHLKSLQLVGCRRLTDKGVKRLFK 299
Query: 179 LTNLKSLQI-SCSKVTDSGI-------AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
LT L+ L++ C K+TD L+ L +S+ C + R + ++
Sbjct: 300 LTKLEKLRLGRCRKLTDDAFGGFVDSFPKLRELDVSN-----CRLSERAM---QHIGQVK 351
Query: 231 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
L +L + GC ++ + SL+ L +L Y + C ++++ L+VL LG+
Sbjct: 352 SLEVLVIRGCQDISDVGMASLAELTNLKYFDARHCGKIHSIPTEWTQ---LEVLLLGYTA 408
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SG 348
+ L+ LT L+ L L C I G ++ L +L+ LE+++T + S L + +
Sbjct: 409 FAESDAAVLQYLTKLQELELRKCRIMKRGFQFISRLKHLERLEVAETALTDSRLLEICNN 468
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
NL+++N+S T ISD L L L+ L LD IT+ LA L+ L L LDLFGA
Sbjct: 469 AINLKALNVSNTEISDSGTTGLTKLKELRILGLDTSGITNRALANLSFLPQLERLDLFGA 528
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
ITD+G +L L+ L ICGG + D GV I L+SLT LNLSQN N+ K+L +
Sbjct: 529 NITDNGLMHLIPLHKLQELAICGGNIGDRGVGLISKLTSLTSLNLSQNRNIRTKSLFYLR 588
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
LT L LN+SN+ I++ LRHL PLK L+SL++ C ++ I L+ LP L R
Sbjct: 589 SLTSLRCLNLSNTGISALSLRHLSPLKELQSLSVYGCSLSQGHIDVLRE-ILPELKCLR 646
>gi|46447588|ref|YP_008953.1| hypothetical protein pc1954 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401229|emb|CAF24678.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 704
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 162/470 (34%), Positives = 251/470 (53%), Gaps = 16/470 (3%)
Query: 51 VIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
+I + +++ S +D +TD+ L+ L++C NL+ L N C I+D GL HL L+ L
Sbjct: 188 IIIPFSKEIEALNFSNNDYLTDAHLLTLRNCENLKVLHLNACQAITDDGLAHLTPLTGLQ 247
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
L R +T G+ L L L+L C + GL +L L L+ L+++ C +
Sbjct: 248 HLDIRVCEYLTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYL 307
Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFL 226
T + + L L L+ L +S C +T+ G+++L L ++ + C + V+L
Sbjct: 308 TATGLAHLKPLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGL--VYL 365
Query: 227 TSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN 284
T L L L+L G +T A L L+ L +L L+L+ C+ L+D G + +L+ LN
Sbjct: 366 TPLTGLQHLDLSGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLN 425
Query: 285 L-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSS 341
L +TD+ L HL LT L+ L+L C + D GL +LT L L+ L+LS + +
Sbjct: 426 LRNCRNLTDDGLAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDV 485
Query: 342 GLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 399
GL HL L L+ +NL + ++D L LA L++L+ L+L D +TD GLA LT LT
Sbjct: 486 GLAHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTA 545
Query: 400 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 457
L HLDL + +T +G A+L L+ L++ L DAG+ H+K L++L L LS
Sbjct: 546 LQHLDLKYCINLTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCE 605
Query: 458 NLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 506
NLTD L + LT L L + + + +T AGL HL+ L +L+ L L C+
Sbjct: 606 NLTDDGLAHLRSLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQ 655
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 237/446 (53%), Gaps = 18/446 (4%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL +L + LQ L+ + C ++D GL HL L+ L L R +TA G+
Sbjct: 257 LTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLK 316
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L L L+ L++ +C + D+ + L+ LT L+ L +
Sbjct: 317 PLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDL 376
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA 244
S K+TD+G+A+L L ++ + C + + H L L+ L LNL C +T
Sbjct: 377 SGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAH--LMPLKALQHLNLRNCRNLTD 434
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLT 302
L L+ L +L +L+L+ C QL+D G + + L+ L+L + E +TD L HL L
Sbjct: 435 DGLAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLK 494
Query: 303 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF- 359
L+ LNL +C + D+GLV+L L L+ L+LSD + +GL HL+ LT L+ ++L +
Sbjct: 495 ALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYC 554
Query: 360 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 417
++ L LA L+ L+ L+L + + D GL L LT L +L L + +TD G A+
Sbjct: 555 INLTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAH 614
Query: 418 LRNFKNLRSLE-ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
LR+ L+ L I LTDAG+ H++ L+SL L+L NLT L + LT L L
Sbjct: 615 LRSLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYL 674
Query: 477 NVSNSR-ITSAGLRHLKPLK---NLR 498
++ + +T GL K L NLR
Sbjct: 675 ALTQYKNLTDDGLARFKTLASSTNLR 700
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 190/374 (50%), Gaps = 14/374 (3%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVT 70
+L Y + LT V L ALQ L L + D + V + + L +DLSG +T
Sbjct: 325 DLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGL-VYLTPLTGLQHLDLSGYHKLT 383
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD ++C ++D GL HL L L L+ R +T G+ A L
Sbjct: 384 DAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPL 443
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-S 188
L LDL C ++ GL +L L L+ L++ +C +TD + L L L+ L + +
Sbjct: 444 TALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRN 503
Query: 189 CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAAC 246
C +TD G+ +L L ++ + C+ + H LT L L L+L+ C +T A
Sbjct: 504 CRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAH--LTPLTALQHLDLKYCINLTGAG 561
Query: 247 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNL 304
L L+ L L YL+L+ C+ L D G + +L+ L L + E +TD+ L HL+ LT L
Sbjct: 562 LAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTAL 621
Query: 305 ESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTG 361
+ L L + D GLV+L L +L+ L+L Q + GL HL LT L+ + L+ +
Sbjct: 622 QHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYLALTQYKN 681
Query: 362 ISDGSLRKLAGLSS 375
++D L + L+S
Sbjct: 682 LTDDGLARFKTLAS 695
>gi|46446522|ref|YP_007887.1| hypothetical protein pc0888 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400163|emb|CAF23612.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 653
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 158/436 (36%), Positives = 232/436 (53%), Gaps = 37/436 (8%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C I+D GL HL L+ L L +T G+
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLT 295
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQ 186
L L L+L C ++ GL +L L L+ LN+ C +TD+ + L+ LT L+ L
Sbjct: 296 PLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLN 355
Query: 187 IS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
+S C K+TD+G+ +LK LT LQ L L E +T A
Sbjct: 356 LSFCDKLTDAGLVHLK-----------------------LLTGLQHLDL--REFWELTGA 390
Query: 246 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 303
L L+ L +L +L+L+ C +L+D G + + +L+ L+L +T+ LVHLK LT
Sbjct: 391 GLAHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTG 450
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 360
L+ LNL C + D GL +LT L L+ L+LS +++ GL HL+ LT L+ ++LS +
Sbjct: 451 LQHLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCS 510
Query: 361 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 418
++D L L L++L+ L L R +TD GLA LT L L HL+L G ++T +G A+L
Sbjct: 511 KLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHL 570
Query: 419 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
R L+ L++ GLTDAG+ H+ L +L L+LS LTD L + L L L+
Sbjct: 571 RPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLD 630
Query: 478 VSN-SRITSAGLRHLK 492
+S +T AGL H K
Sbjct: 631 LSYCDGLTDAGLAHFK 646
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 206/372 (55%), Gaps = 38/372 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS 204
L+ LK L+ L+++ C ITD + L+ LT L+ L++S C K+TD+G+A+L L
Sbjct: 239 AHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPL- 297
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNR 263
T+LQ L NL C +T A L L+ L +L +LNL+R
Sbjct: 298 ----------------------TALQHL---NLSFCDKLTDAGLAHLTPLTALQHLNLSR 332
Query: 264 C--QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL-DSCGIGDEGL 319
C +L+D G + + +L+ LNL F +++TD LVHLK LT L+ L+L + + GL
Sbjct: 333 CYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGL 392
Query: 320 VNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 377
+LT L L+ L+LS ++ GL HL+ LT L+ ++L +++ L L L+ L+
Sbjct: 393 AHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQ 452
Query: 378 SLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGL 434
LNL + +TD GLA LT LT L HLDL +++TD G A+L L+ L++ L
Sbjct: 453 HLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKL 512
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 493
TD G+ H+ L++L L L++ NLTD L ++ L L LN+S ++T AGL HL+P
Sbjct: 513 TDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRP 572
Query: 494 LKNLRSLTLESC 505
L L+ L L C
Sbjct: 573 LVALQHLDLSYC 584
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 172/317 (54%), Gaps = 11/317 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ L+ +FC +++D GL HL+ L+ L L R +T G+
Sbjct: 337 LTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLT 396
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C ++ GL +L L L+ L++K C +T++ + L LT L+ L +
Sbjct: 397 TLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNL 456
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTA 244
S C +TD+G+A+L L ++ + CS + H LT L L L+L C +T
Sbjct: 457 SECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAH--LTPLTALQHLDLSQCSKLTD 514
Query: 245 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLT 302
L L+ L +L +L L RC+ L+D G + + +L+ LNL G ++T L HL+ L
Sbjct: 515 DGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLV 574
Query: 303 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF- 359
L+ L+L C G+ D GL +LT L L+ L+LS + +GL HL L L+ ++LS+
Sbjct: 575 ALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYC 634
Query: 360 TGISDGSLRKLAGLSSL 376
G++D L L+++
Sbjct: 635 DGLTDAGLAHFKFLAAI 651
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 147/278 (52%), Gaps = 39/278 (14%)
Query: 273 KFSKI-----GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL 325
+F KI ++ N N +TD L+ LK NL+ L+L+ C I D+GL +LT L
Sbjct: 213 EFEKIIKHFLNEIEAFNFSDNAYLTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPL 272
Query: 326 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD- 382
L+ LELSD ++ +GL HL+ LT L+ +NLSF ++D L L L++L+ LNL
Sbjct: 273 TALQHLELSDCRKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSR 332
Query: 383 -ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSL------EICGGGL 434
++TD GLA LT LT L HL+L F ++TD+G +L+ L+ L E+ G GL
Sbjct: 333 CYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGL 392
Query: 435 --------------------TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
TD G+ H+ L++L L+L + NLT+ L + LTGL
Sbjct: 393 AHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQ 452
Query: 475 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
LN+S +T AGL HL PL L+ L L C +D
Sbjct: 453 HLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDD 490
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++T +GL HL + LQ LD + C +++D GL HL L+ L L +R +T G+
Sbjct: 386 ELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNAGLVHL 445
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L+L C + GL +L L L+ L++ C+ +TD + L+ LT L+ L
Sbjct: 446 KLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLD 505
Query: 187 IS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE-GCPVT 243
+S CSK+TD G+A+L L ++ ++ C + H LT L+ L LNL G +T
Sbjct: 506 LSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAH--LTPLETLQHLNLSGGYKLT 563
Query: 244 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 301
A L L L +L +L+L+ C L+D G + + +L+ L+L + + +TD L HL+ L
Sbjct: 564 GAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPL 623
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLC 326
L+ L+L C G+ D GL + L
Sbjct: 624 VALQHLDLSYCDGLTDAGLAHFKFLA 649
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L Q + D + + + ++L +DLS S +TD GL HL + LQ L
Sbjct: 475 ALQHLDLSQCSKLTDDGLAHL-TPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLAR 533
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL L L L+ +T G+ L+ L LDL C + GL
Sbjct: 534 CRNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLA 593
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS 204
+L L+ L+ L++ +C+ +TD+ + L L L+ L +S C +TD+G+A+ K L+
Sbjct: 594 HLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFLA 649
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS + +TD+GL HL LQ LD ++C ++D GL HLR L L L
Sbjct: 575 ALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYC 634
Query: 117 NAITAQGMKAFAGLINLVK 135
+ +T G+ F L ++
Sbjct: 635 DGLTDAGLAHFKFLAAIIH 653
>gi|46447096|ref|YP_008461.1| hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400737|emb|CAF24186.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 870
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 175/494 (35%), Positives = 256/494 (51%), Gaps = 46/494 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ+L L + + D + ++S ++L +DLSG D+TD+GL HL +LQ LD +
Sbjct: 385 ALQNLDLSECYLLKDTGLAHLSSL-TALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSK 443
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++ GL HL L L L +T G+ L L LDL C + GLV
Sbjct: 444 CENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLV 503
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-----SCSKVTDSGIAYLKGLS 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L
Sbjct: 504 HLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSS-- 561
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
LT+L+ L L E +T A L L++L +L +L+L+ C
Sbjct: 562 ---------------------LTALKHLDLSWREN--LTDAGLAHLTSLTALKHLDLSWC 598
Query: 265 Q-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVN 321
+ L+D+G + + +L+ L+L ++ITDE L HL L+ L L+L+ C GL +
Sbjct: 599 ENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAH 658
Query: 322 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS--FTGISDGSLRKLAGLSSLKS 378
LT L NL+ L+LS + S L LS L NL+ +NLS F DG L L L +L+
Sbjct: 659 LTTLVNLEHLDLSGCYSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDG-LEDLTPLMNLQY 717
Query: 379 LNLDA-RQITDTGLAALTSLT--GLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GG 433
L+L + +TD GLA LTSL GL HLDL G + ITD+G A+L + L L++
Sbjct: 718 LDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCEN 777
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLK 492
LTD G+ ++ + L LNL +TD L ++ L L LN+S +T GL HL
Sbjct: 778 LTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTDTGLAHLV 837
Query: 493 PLKNLRSLTLESCK 506
L NL+ L L CK
Sbjct: 838 SLVNLQDLELRECK 851
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 163/452 (36%), Positives = 238/452 (52%), Gaps = 17/452 (3%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ+LD + C + D GL HL L+ L L + +T G+ L
Sbjct: 374 DTGLAHLTSLTALQNLDLSECYLLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPL 433
Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
++L LDL +C + G GL +L L+ L L + C +TD+ + L+ LT LK L +S
Sbjct: 434 VSLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSE 493
Query: 189 CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVF-LTSLQKLTL-LNLEGCP-VTA 244
C +TD G+ +L L ++ + LC + H+ LT+L+ L L L+ C +T
Sbjct: 494 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTD 553
Query: 245 ACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLT 302
L LS+L +L +L+L+ R L+D G + + +LK L+L + E +TDE L +L L
Sbjct: 554 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLV 613
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLS-F 359
L+ L+L I DEGL +L L L+ L L+D + GL HL+ L NLE ++LS
Sbjct: 614 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGC 673
Query: 360 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 417
+S L L+ L +L+ LNL + GL LT L L +LDL +TD G AY
Sbjct: 674 YSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDKGLAY 733
Query: 418 LRNFK--NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
L + L+ L++ G +TD G+ H+ L L L+LS NLTDK L ++ GL
Sbjct: 734 LTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLK 793
Query: 475 SLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
LN+ +IT AGL HL L L+ L L C
Sbjct: 794 YLNLKGCKKITDAGLAHLTSLVTLQRLNLSEC 825
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 168/302 (55%), Gaps = 26/302 (8%)
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFS 275
+++ CL +F T P+ L L++L +L L+L+ C L D G S
Sbjct: 361 LKVLCLKIFYT-------------PIDTG-LAHLTSLTALQNLDLSECYLLKDTGLAHLS 406
Query: 276 KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 333
+ +L+ L+L G +++TD L HL L +L+ L+L C + +GL +LT L L+ L L
Sbjct: 407 SLTALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSKCENLTGDGLAHLTPLVALRHLGL 466
Query: 334 SDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 390
SD + + +GL HL+ LT L+ ++LS ++D L L+ L +L+ L+L +TD G
Sbjct: 467 SDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAG 526
Query: 391 LAALTSLTGLTHLDL---FG--ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 444
LA LTSLT L HLDL FG +TD G A+L + L+ L++ LTDAG+ H+
Sbjct: 527 LAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTS 586
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L++L L+LS NLTD+ L ++ L L L++ S IT GL HL L LR L+L
Sbjct: 587 LTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLND 646
Query: 505 CK 506
C+
Sbjct: 647 CR 648
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 160/336 (47%), Gaps = 37/336 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL HL + L+ LD ++ ++D GL HL L+ L L +T +G+
Sbjct: 550 NLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYL 609
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQ 186
L+ L L L+ GL +L L L L++ C I + L+ L NL+ L
Sbjct: 610 TPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLD 669
Query: 187 IS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTA 244
+S C S+SS I FL+SL L LNL GC +
Sbjct: 670 LSGC-------------YSLSSFKLI-------------FLSSLVNLQHLNLSGCFGLYH 703
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL---GFNEITDECLVHLKG 300
L+ L+ L +L YL+L+ C L+D G + + L + +L G EITD L HL
Sbjct: 704 DGLEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTS 763
Query: 301 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
L LE L+L C + D+GL LT LK L L ++ +GL HL+ L L+ +NLS
Sbjct: 764 LVGLEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLS 823
Query: 359 F-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA 392
++D L L L +L+ L L + + ITDTGLA
Sbjct: 824 ECVNLTDTGLAHLVSLVNLQDLELRECKSITDTGLA 859
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 111/225 (49%), Gaps = 11/225 (4%)
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+E L+ LK L N L + I ++GL N S L H S T+
Sbjct: 282 EESLIELKELLNFARLYQLNNLINYLEFTVVSGLLN----NTSHVNEFEKILNHFS--TD 335
Query: 352 LESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGAR 409
+E +NLS ++ L +LK L L DTGLA LTSLT L +LDL
Sbjct: 336 IEELNLSGKDFFTEAHFLALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQNLDLSECY 395
Query: 410 I-TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+ D+G A+L + L+ L++ G LTDAG+ H+ L SL L+LS+ NLT L +
Sbjct: 396 LLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSKCENLTGDGLAHL 455
Query: 468 SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+ L L L +S+ R +T AGL HL PL L+ L L CK +D
Sbjct: 456 TPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDD 500
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIAS-QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
LQ L L + DK + + S G L +DLSG ++TD+GL HL L+ LD ++
Sbjct: 715 LQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSW 774
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL +L + L L+ + IT G+ L+ L +L+L C + GL
Sbjct: 775 CENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTDTGLA 834
Query: 150 NLKGLMKLESLNIKWCNCITDS 171
+L L+ L+ L ++ C ITD+
Sbjct: 835 HLVSLVNLQDLELRECKSITDT 856
>gi|46447590|ref|YP_008955.1| hypothetical protein pc1956 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401231|emb|CAF24680.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 659
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 152/436 (34%), Positives = 227/436 (52%), Gaps = 38/436 (8%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 234 ENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGL 293
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GL +L L L+ LN+ +C+ +TD+ + LS LT L+
Sbjct: 294 AHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQ 353
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP- 241
L +S C +TD+G+ +LK L +LQ LNL C
Sbjct: 354 HLDLSDCENLTDAGLVHLKP-----------------------LVALQH---LNLSCCEN 387
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 299
+T A L L L +L +L+L+ C L+D G + + +L+ L+L + N +TD LVHLK
Sbjct: 388 LTDAGLVHLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLK 447
Query: 300 GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 357
LT L+ L+L C + D+GL +LT L L+ L LS + + +GL HL LT L+ + L
Sbjct: 448 FLTALQHLDLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRL 507
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 414
S ++D L L L +L+ L+L +TD GL LT L L HLDL + +T G
Sbjct: 508 SQCWNLTDAGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDG 567
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+LR+ L+ L + LTDAG+ H++ L++L L+LS N TD L ++ L L
Sbjct: 568 LAHLRSLTTLQHLSLNQCWNLTDAGLVHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMAL 627
Query: 474 VSLNVSN-SRITSAGL 488
LN+ R+T GL
Sbjct: 628 QHLNLRGCDRVTDVGL 643
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 196/381 (51%), Gaps = 57/381 (14%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS 204
L+ LK L+ L+++ C +TD+ + L+ L LK L ++ C K+T++G+A+L+ L
Sbjct: 241 AHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGLAHLRPL- 299
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
T+LQ L L N +T A L L+ L +L +LNLN C
Sbjct: 300 ----------------------TALQHLNLGNCRN--LTDAGLAHLTPLTALQHLNLNFC 335
Query: 265 -QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 321
+L+D G + S + +L+ L+L E +TD LVHLK L L+ LNL C + D GLV+
Sbjct: 336 DKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVH 395
Query: 322 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L L L+ L+LSD + +GL HL+ LT L+ ++LS+
Sbjct: 396 LKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSY--------------------- 434
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAG 438
+TD GL L LT L HLDL G ++ D G A+L L++L + LTDAG
Sbjct: 435 --CNNLTDAGLVHLKFLTALQHLDLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAG 492
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNL 497
+ H+K L++L L LSQ NLTD L + L L L++S +T GL HL PL L
Sbjct: 493 LGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMAL 552
Query: 498 RSLTLESCK-VTANDIKRLQS 517
+ L L C+ +T + + L+S
Sbjct: 553 QHLDLNYCENLTGDGLAHLRS 573
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 167/323 (51%), Gaps = 37/323 (11%)
Query: 46 DKWMD---VIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
DK D V S ++L +DLS ++TD+GL+HLK LQ L+ + C ++D GL H
Sbjct: 336 DKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVH 395
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 160
L+ L L L N +T G+ L L LDL C + GLV+LK L L+ L
Sbjct: 396 LKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHL 455
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
+++ C+ + D + L+ LT L++L +S C +TD+G+ +LK
Sbjct: 456 DLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLK------------------ 497
Query: 220 FCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI 277
LT+LQ L L C +T A L L L +L +L+L+ C L+D G + +
Sbjct: 498 -----LLTALQY---LRLSQCWNLTDAGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPL 549
Query: 278 GSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 335
+L+ L+L + E +T + L HL+ LT L+ L+L+ C + D GLV+L L L+ L+LS
Sbjct: 550 MALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCWNLTDAGLVHLEPLTALQHLDLSY 609
Query: 336 T-QVGSSGLRHLSGLTNLESINL 357
GL HL+ L L+ +NL
Sbjct: 610 CGNFTDVGLVHLTSLMALQHLNL 632
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 143/252 (56%), Gaps = 13/252 (5%)
Query: 273 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 325
+F +I ++ LN N +TD L+ LK NL+ L+L C + D GLV+L L
Sbjct: 215 EFQRIINQFSNEIEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPL 274
Query: 326 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD- 382
LK L L+ ++ ++GL HL LT L+ +NL + ++D L L L++L+ LNL+
Sbjct: 275 VALKHLNLNFCDKLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNF 334
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVK 440
++TDTGL L+ LT L HLDL +TD+G +L+ L+ L + C LTDAG+
Sbjct: 335 CDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLV 394
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 499
H+K L +L L+LS NLTD L ++ LT L L++S + +T AGL HLK L L+
Sbjct: 395 HLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQH 454
Query: 500 LTLESCKVTAND 511
L L C A+D
Sbjct: 455 LDLRGCDKVADD 466
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS ++TD GL+HL LQ LD N+C ++ GL HLR L+ L LS +
Sbjct: 526 ALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQC 585
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITD 170
+T G+ L L LDL C GLV+L LM L+ LN++ C+ +TD
Sbjct: 586 WNLTDAGLVHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMALQHLNLRGCDRVTD 640
>gi|46447144|ref|YP_008509.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400785|emb|CAF24234.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 670
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 216/446 (48%), Gaps = 59/446 (13%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK C NL+ L C ++D GL HL L L L + + +T G+
Sbjct: 275 ENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNLTDAGL 334
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L L C + GL +LK L+ L+ LN+ CN TD+ + L+ L LK
Sbjct: 335 THLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCN-FTDAGLAHLTPLVTLK 393
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP- 241
L +S C +TD+G+A+L T L L LNL C
Sbjct: 394 YLNLSQCYNLTDAGLAHL--------------------------TPLVNLQQLNLSDCTN 427
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 300
+T L LS L +L +LNLN C+L D G + + +L+ LNL + +TD L HL
Sbjct: 428 LTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLST 487
Query: 301 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS 358
L L+ L+LD C + D GL +LT L LK L LS + +GL HL+ L L+ ++LS
Sbjct: 488 LVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDLS 547
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 417
+ G + D GLA LT L L +LDL +TD+G A+
Sbjct: 548 WNG-----------------------DLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAH 584
Query: 418 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
LR+ L+ L++ G LTDAG+ H+ L +L L+L NLTD L ++ L L L
Sbjct: 585 LRSLVALKHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDL 644
Query: 477 NVSN-SRITSAGLRHLKPLKNLRSLT 501
+ N RIT AGL HL LR T
Sbjct: 645 ELPNCQRITDAGLAHLASSMTLRIWT 670
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/407 (34%), Positives = 207/407 (50%), Gaps = 36/407 (8%)
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
+L+F N +T + A NL L L++C + GL +L L+ L+ L++ C+ +
Sbjct: 270 ALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNL 329
Query: 169 TDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
TD+ + L+ L L L + C +TD+G+A+LK
Sbjct: 330 TDAGLTHLTFLDALNYLGLGECYNLTDTGLAHLK-------------------------- 363
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG 286
SL L LNL C T A L L+ L +L YLNL++C L+D G + + +L+ LNL
Sbjct: 364 SLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLS 423
Query: 287 -FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLR 344
+TD L +L L L+ LNL+ C + D GL +LT L NL+ L LS T + +GL
Sbjct: 424 DCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLA 483
Query: 345 HLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 402
HLS L L+ ++L ++D L L L +LK LNL +T GLA LT L L H
Sbjct: 484 HLSTLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKH 543
Query: 403 LDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
LDL + + D+G A+L L+ L++ LTDAG+ H++ L +L L+L LT
Sbjct: 544 LDLSWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLT 603
Query: 461 DKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
D + ++ L L L++ +T AGL HL L L+ L L +C+
Sbjct: 604 DAGIAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQ 650
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 155/297 (52%), Gaps = 7/297 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L+ + TD+GL HL L+ L+ + C ++D GL HL L NL L+
Sbjct: 367 NLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCT 426
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+ + L+ L L+L C I GL +L L+ L+ LN+ +C +TD+ + LS
Sbjct: 427 NLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLS 486
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L L+ L + C K+TD G+A+L L + + C + L LT L L L+
Sbjct: 487 TLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGL-AHLTPLVALKHLD 545
Query: 237 LE-GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDE 293
L + A L L+ L +L YL+L+ C L+D G + +LK L+L G ++TD
Sbjct: 546 LSWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVALKHLDLRGCYQLTDA 605
Query: 294 CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSG 348
+ HL L L+ L+L C + D GL +LT L L+ LEL + Q + +GL HL+
Sbjct: 606 GIAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQDLELPNCQRITDAGLAHLAS 662
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 272 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
EK S +V L F+E +TD L+ LK NL+ L L C CNL
Sbjct: 258 EKILNYFSNEVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKC-------------CNL 304
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 386
+GL HL+ L L+ ++LS ++D L L L +L L L + +
Sbjct: 305 T----------DAGLPHLTPLVALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNL 354
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 445
TDTGLA L SL L HL+L TD+G A+L L+ L + LTDAG+ H+ L
Sbjct: 355 TDTGLAHLKSLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPL 414
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+L LNLS NLTD L +S L L LN++ ++ AGL HL PL NL+ L L C
Sbjct: 415 VNLQQLNLSDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYC 474
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 407 GARITDSGAAYLRNFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
A +TD+ L+ KNL+ L + C LTDAG+ H+ L +L L+LS+ NLTD
Sbjct: 276 NAHLTDAHLLALKTCKNLKVLYLKKCCN--LTDAGLPHLTPLVALQYLDLSKCHNLTDAG 333
Query: 464 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 508
L ++ L L L + +T GL HLK L NL+ L L +C T
Sbjct: 334 LTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCNFT 379
>gi|149174587|ref|ZP_01853213.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
gi|148846697|gb|EDL61034.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
Length = 540
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 146/468 (31%), Positives = 223/468 (47%), Gaps = 48/468 (10%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G E G L F ++ + A + L NL + L T GG ++ GL L
Sbjct: 77 GEEKFLGFMTAVELDFEFGE-LSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNL 135
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
E L+++ ITDSD+K + L NL+ L ++ + ++D+G+A+L+GLS V+ + + +
Sbjct: 136 ELLSLR-GTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLD 194
Query: 218 RLFCLHVFLTSLQKLTLLNLE--------------------------------------- 238
V+L L L L+L+
Sbjct: 195 GTGL--VYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKL 252
Query: 239 ---GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
G ++ L L L L L R +SD G + +L L L + ++D L
Sbjct: 253 SLFGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGL 312
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
VHL L L+SL+L + I D GL++L L +LK L+LSDT V GL HLS L NLES+
Sbjct: 313 VHLAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESL 372
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
L T +S L L LS L+ L++ ++ D GL A+ L L L LF ITD G
Sbjct: 373 YLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGL 432
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+L NL+ L++ ++DAG+ H+ L+ L +L+L + +TD L + GL L
Sbjct: 433 VHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDL-EGTRITDAGLIHLQGLNELEQ 491
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L + + ++ AGL+HLK L L+ L E ++T I L+ + LP+L
Sbjct: 492 LELDKTAVSDAGLKHLKGLTKLQFLQYEETQITEAGINDLR-QSLPDL 538
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 183/376 (48%), Gaps = 69/376 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN--------------------------- 89
S L ++L G+ + +GL++LK ++L+ LD +
Sbjct: 181 SELRVLELEGTQLDGTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGL 240
Query: 90 --------------FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
F +ISD GL HL+ L L SL F R N I+ +G+ GL+NL
Sbjct: 241 KHIGKLKHLKKLSLFGAEISDVGLAHLQDLKKLESLEFAREN-ISDKGVAHLKGLLNLTS 299
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L+ GLV+L L KL+SL++ I+D+ + L LT+LKSL +S + V+D
Sbjct: 300 LRLDGSRVSDAGLVHLAKLQKLQSLDLG-NTSISDTGLIHLQELTSLKSLDLSDTAVSDD 358
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS 255
G+ + L+ LQ L L L ++ L SL L
Sbjct: 359 GL--------------------------IHLSRLQNLESLYLRSTNLSGVGLSSLKNLSM 392
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
L YL++ +++D G +++GSL L L ITD+ LVHL GLTNL+ L+L I
Sbjct: 393 LQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVHLSGLTNLKKLDLQETSIS 452
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
D GLV+L+ L LK L+L T++ +GL HL GL LE + L T +SD L+ L GL+
Sbjct: 453 DAGLVHLSHLAGLKVLDLEGTRITDAGLIHLQGLNELEQLELDKTAVSDAGLKHLKGLTK 512
Query: 376 LKSLNLDARQITDTGL 391
L+ L + QIT+ G+
Sbjct: 513 LQFLQYEETQITEAGI 528
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 198/409 (48%), Gaps = 45/409 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TDS L ++ NLQ L+ N ISD GL HLRGLS L L + G
Sbjct: 140 LRGTTITDSDLKYVGALKNLQKLNLN-NTAISDAGLAHLRGLSELRVLELE-GTQLDGTG 197
Query: 124 MKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+ L +L +LDL E +I + G +K +
Sbjct: 198 LVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFGA 257
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
I+D + L L L+SL+ + ++D G+A+LKGL
Sbjct: 258 EISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLL---------------------- 295
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
LT L L+G V+ A L L+ L L L+L +SD G ++ SLK L+L
Sbjct: 296 ----NLTSLRLDGSRVSDAGLVHLAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLS 351
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
++D+ L+HL L NLESL L S + GL +L L L+ L++ +++ GL +
Sbjct: 352 DTAVSDDGLIHLSRLQNLESLYLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAV 411
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+ L +L+S+ L T I+D L L+GL++LK L+L I+D GL L+ L GL LDL
Sbjct: 412 AELGSLDSLGLFATPITDQGLVHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLE 471
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
G RITD+G +L+ L LE+ ++DAG+KH+K L+ L L +
Sbjct: 472 GTRITDAGLIHLQGLNELEQLELDKTAVSDAGLKHLKGLTKLQFLQYEE 520
>gi|46446910|ref|YP_008275.1| hypothetical protein pc1276 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400551|emb|CAF24000.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 667
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 235/440 (53%), Gaps = 40/440 (9%)
Query: 66 GSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S VT+ I LK SN ++ L+F+ I ++D L L+ NL +L + + +T G+
Sbjct: 243 ASHVTEFEKI-LKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGL 301
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L+ L L+L C + GL +L LM L+ LN+ C+ ITD+ + L+ L L+
Sbjct: 302 AHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQ 361
Query: 184 SLQISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-P 241
L +SC + +TD+G+ +L+ L LT LNL C
Sbjct: 362 HLDLSCCRNLTDAGLTHLRPLV--------------------------ALTHLNLAKCHK 395
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 299
+T A L L++L +L +L+L+ C+ L+D G + + +L+ L+L + + T+ L HL
Sbjct: 396 ITDAGLAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLT 455
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 357
L L+ LNL+SC D GL +LT L L+ L+LS + + +GL HL+ L L+ ++L
Sbjct: 456 SLVALQHLNLNSCYKFTDAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDL 515
Query: 358 SFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSG 414
S++ ++ L L L +L+ L+L R +TD GLA LTSL L HLDL ++TD+G
Sbjct: 516 SYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAG 575
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+L L+ L++ LTDAG+ H+ L +L L+LS LTD L ++ L L
Sbjct: 576 LEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVAL 635
Query: 474 VSLNVSN-SRITSAGLRHLK 492
LN++ ++T AG+ H K
Sbjct: 636 QHLNLNWCDKLTDAGVAHFK 655
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/362 (35%), Positives = 202/362 (55%), Gaps = 11/362 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL LQ L+ N C +++D GL HL L L L+ + + IT G+
Sbjct: 296 LTDAGLAHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLT 355
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L+ L+ L LN+ C+ ITD+ + L+ L L+ L +
Sbjct: 356 SLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDL 415
Query: 188 S-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAA 245
S C K+TD+G+A+L L + + S L LTSL L LNL C T A
Sbjct: 416 SYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNAGL-AHLTSLVALQHLNLNSCYKFTDA 474
Query: 246 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 303
L L++L +L +L+L+ C+ L+D G + + +L+ L+L + + T+ L HL L
Sbjct: 475 GLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVA 534
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 360
L+ L+L C + D GL +LT L L+ L+LS ++ +GL HL+ L L+ ++LS
Sbjct: 535 LQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCK 594
Query: 361 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 418
++D L LA L +L+ L+L + +++TD GLA L L L HL+L + ++TD+G A+
Sbjct: 595 KLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHF 654
Query: 419 RN 420
++
Sbjct: 655 KS 656
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 200/363 (55%), Gaps = 14/363 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGL-SISSVIFILC 213
++E LN +TD+ + L NLK+L + C K+TD+G+A+L L ++ + C
Sbjct: 259 EIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASLMALQHLNLNGC 318
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 271
+ H L SL L LNL C +T A L L++L +L +L+L+ C+ L+D G
Sbjct: 319 WELTDAGLAH--LASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGL 376
Query: 272 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 329
+ +L LNL ++ITD L HL L L+ L+L C + D GL +LT L L+
Sbjct: 377 THLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQ 436
Query: 330 CLELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQI 386
L+LS + ++GL HL+ L L+ +NL S +D L L L +L+ L+L R +
Sbjct: 437 HLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLTSLVALQHLDLSCCRNL 496
Query: 387 TDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKD 444
TD GLA L L L HLDL + T++G A+L + L+ L++ C LTDAG+ H+
Sbjct: 497 TDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTS 556
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 503
L +L L+LS LTD LE ++ L L L++S+ ++T AGL HL PL L+ L L
Sbjct: 557 LVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLS 616
Query: 504 SCK 506
SCK
Sbjct: 617 SCK 619
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ LD + C +++D GLEHL L L L +T G+
Sbjct: 545 NLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHL 604
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L+ L LDL C ++ GL +L L+ L+ LN+ WC+ +TD +G+ + KS
Sbjct: 605 APLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTD------AGVAHFKS 656
>gi|46446667|ref|YP_008032.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400308|emb|CAF23757.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 662
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 215/391 (54%), Gaps = 14/391 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ L C ++++ GL HL L+ L L+ +T G+
Sbjct: 262 LTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLT 321
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L L C + GL +L LM L+ L++ C +TD+ + L+ LT L+ L +
Sbjct: 322 PLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNL 381
Query: 188 S-CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA 244
S C+K+TD+G+A+L L+ + + C + H LT L L L+L GC +T
Sbjct: 382 SRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAH--LTPLTGLQHLDLSGCQNLTD 439
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 302
A L L+ L L +LNL C + +D+G + + L+ LNL N++TD L HL LT
Sbjct: 440 AGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLT 499
Query: 303 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSF- 359
L+ L+L SC + D GL +LT L +L+ L L S ++ +GL HL LT L+ +NLS
Sbjct: 500 ALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNC 559
Query: 360 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 417
++D L L L++L+ L L+ R++TD GLA LTSLT L HLDL + +TD+G A+
Sbjct: 560 KNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAH 619
Query: 418 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 447
L LR L++ LT AG+ K L++
Sbjct: 620 LTPLTGLRHLDLSQCWRLTKAGLARFKTLAA 650
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 156/487 (32%), Positives = 244/487 (50%), Gaps = 64/487 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D++ +I + + ++L + ++ + LK C NL+ L F C ++D GL HL
Sbjct: 212 LSDEFGRIINHFSNEIKILNLPNKILNNACFLALKSCENLKVLHFKECRHLTDAGLAHLT 271
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
L+ L L L +C R+ + GL +L L L+ LN+
Sbjct: 272 PLTALQHLG-------------------------LGQCWRLTNAGLAHLTPLTALQYLNL 306
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+TD+ + L+ LT L+ L +S C +TD+G+A+L
Sbjct: 307 SEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHL--------------------- 345
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS 279
T L L L+L GC +T A L L+ L L +LNL+RC +L+D G + +
Sbjct: 346 -----TPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTG 400
Query: 280 LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-T 336
L+ L+L G +TD L HL LT L+ L+L C + D GL +LT L L+ L L +
Sbjct: 401 LQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCR 460
Query: 337 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 394
+ +GL HL+ L+ L+ +NLS ++D L L L++L+ L+L + +TD GLA L
Sbjct: 461 KFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHL 520
Query: 395 TSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 452
T LT L HL L ++TD+G +L+ L+ L + LTDAG+ H+ L++L L
Sbjct: 521 TPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLY 580
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTAN 510
L+ LTD L ++ LT L L++ + +T AGL HL PL LR L L C ++T
Sbjct: 581 LNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQCWRLTKA 640
Query: 511 DIKRLQS 517
+ R ++
Sbjct: 641 GLARFKT 647
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 136/407 (33%), Positives = 202/407 (49%), Gaps = 59/407 (14%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L +Y + D + + ++L + LSG ++TD+GL HL LQ LD +
Sbjct: 300 ALQYLNLSEYKNLTDAGLAHLTPL-TALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSG 358
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL L+ L L+ R N +T G+ L L LDL C + GL
Sbjct: 359 CQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLA 418
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSV 208
+L L L+ L++ C +TD+ + L+ LT L+ L + +C K TD+G+A+L LS+
Sbjct: 419 HLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSV--- 475
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QL 266
L LNL C +T L L+ L +L +L+L+ C L
Sbjct: 476 -----------------------LQHLNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNL 512
Query: 267 SDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
+D G + + SL+ L L +++TD LVHLK LT L+ LNL +C + D GL +LT
Sbjct: 513 TDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTP 572
Query: 325 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L L+ L L+ ++ +GL HL+ LT L+ ++L +
Sbjct: 573 LTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRY-----------------------C 609
Query: 384 RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
+ +TD GLA LT LTGL HLDL R+T +G A + +LEI
Sbjct: 610 QNLTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARFKTLAASLNLEI 656
>gi|168698161|ref|ZP_02730438.1| hypothetical protein GobsU_01477 [Gemmata obscuriglobus UQM 2246]
Length = 417
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 198/402 (49%), Gaps = 54/402 (13%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+K AGL L L+L G+ L G L +LN+ + +TD +K L+G
Sbjct: 64 AGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTT-LTDVGVKELAGFKA 122
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L +L+++ + VTD+G+ L GL + LT L L G
Sbjct: 123 LTTLELNYTDVTDAGVKELAGL--------------------------KALTTLGLGGTK 156
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VT A + L++L L L L + ++D G ++ + + +L L LG ++TD + L G
Sbjct: 157 VTDAGVKELASLKELSVLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAG 216
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L L +L+L G+ D G+ L GL L L+L +T V +G++ L+GL L ++NL
Sbjct: 217 LKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGA 276
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D +++LAGL +L +LNL ++TDTGL L LT LDL +TD+G L
Sbjct: 277 KVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAG 336
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
L L++ G LTDAGVK + L++LT+L L +
Sbjct: 337 LTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGE------------------------- 371
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
+ +T AGL+ L LKNL +L L + KVT +K L + LP
Sbjct: 372 TGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKELTAA-LPK 412
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 192/355 (54%), Gaps = 3/355 (0%)
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F + +SD G++ L GL LT+L+ +T G+K AG L L+L T G
Sbjct: 55 FLYACPLSDAGVKELAGLKALTTLNLGATK-VTDVGVKELAGFKALTTLNLSFTTLTDVG 113
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
+ L G L +L + + + +TD+ +K L+GL L +L + +KVTD+G+ L L S
Sbjct: 114 VKELAGFKALTTLELNYTD-VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELS 172
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
V+ + + + + L L+ LT L L VT A + L+ L +L L+L+ ++
Sbjct: 173 VLGLFAAKAVTDAGVKE-LAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVT 231
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D G ++ + + +L VL+LG +TD + L GL L +LNL + D G+ L GL
Sbjct: 232 DAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKA 291
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L L L T+V +GL+ L+G L +++LSFT ++D +++LAGL++L L+L +T
Sbjct: 292 LSTLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLT 351
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
D G+ L LT LT L L +TD+G L KNL +L + +TDAGVK +
Sbjct: 352 DAGVKELAPLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKEL 406
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 188/364 (51%), Gaps = 30/364 (8%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ ++D+ +K L+GL L +L + +KVTD G+ L G
Sbjct: 57 YACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGF-------------------- 96
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ LT LNL +T + L+ +L L LN ++D G ++ + + +L L
Sbjct: 97 ------KALTTLNLSFTTLTDVGVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTTL 150
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
LG ++TD + L L L L L + + D G+ L GL L LEL T+V +G
Sbjct: 151 GLGGTKVTDAGVKELASLKELSVLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAG 210
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ L+GL L +++L +TG++D +++LAGL +L L+L +TD G+ L L LT
Sbjct: 211 VKELAGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTT 270
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L+L GA++TD+G L K L +L + G +TD G+K + +LT L+LS LTD
Sbjct: 271 LNLGGAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELAGFKALTTLDLSFT-TLTDA 329
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
++ ++GLT L L++S + +T AG++ L PL NL L L VT +K L L N
Sbjct: 330 GVKELAGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGETGVTDAGLKELAG--LKN 387
Query: 523 LVSF 526
L +
Sbjct: 388 LTAL 391
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 146/257 (56%), Gaps = 2/257 (0%)
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
L C LSD G ++ + + +L LNLG ++TD + L G L +LNL + D G+
Sbjct: 56 LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDVGVK 115
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L G L LEL+ T V +G++ L+GL L ++ L T ++D +++LA L L L
Sbjct: 116 ELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLG 175
Query: 381 L-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
L A+ +TD G+ L L LT L+L ++TD+G L K L +L++ G+TDAGV
Sbjct: 176 LFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGV 235
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
K + L +L++L+L N +TD ++ ++GL L +LN+ +++T AG++ L LK L +
Sbjct: 236 KELAGLKALSVLDLG-NTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALST 294
Query: 500 LTLESCKVTANDIKRLQ 516
L L KVT +K L
Sbjct: 295 LNLGGTKVTDTGLKELA 311
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 182/339 (53%), Gaps = 4/339 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L + VTD G+ L L +L+ +F ++D G++ L G LT+L +
Sbjct: 74 ALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGVKELAGFKALTTLELNYTD 132
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K AGL L L L G+ L L +L L + +TD+ +K L+
Sbjct: 133 -VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAVTDAGVKELA 191
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
GL L +L++ +KVTD+G+ L GL + + + + + L L+ L++L+L
Sbjct: 192 GLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKE--LAGLKALSVLDL 249
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
VT A + L+ L +L LNL +++D G ++ + + +L LNLG ++TD L
Sbjct: 250 GNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKE 309
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L G L +L+L + D G+ L GL L L+LS T + +G++ L+ LTNL + L
Sbjct: 310 LAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYL 369
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
TG++D L++LAGL +L +L L ++TD G+ LT+
Sbjct: 370 GETGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKELTA 408
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 118/212 (55%), Gaps = 2/212 (0%)
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
S+ L +C + D G+ L GL L L L T+V G++ L+G L ++NLSFT ++D
Sbjct: 53 SVFLYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFTTLTDV 112
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
+++LAG +L +L L+ +TD G+ L L LT L L G ++TD+G L + K L
Sbjct: 113 GVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELS 172
Query: 426 SLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + +TDAGVK + L +LT L L +TD ++ ++GL L +L++ + +T
Sbjct: 173 VLGLFAAKAVTDAGVKELAGLKALTTLELGLT-KVTDAGVKELAGLKALTTLDLHYTGVT 231
Query: 485 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
AG++ L LK L L L + VT +K L
Sbjct: 232 DAGVKELAGLKALSVLDLGNTGVTDAGVKELA 263
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L+ ++D+G L K L +L + +TD GVK + +LT LNLS LTD +
Sbjct: 56 LYACPLSDAGVKELAGLKALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGV 114
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+ ++G L +L ++ + +T AG++ L LK L +L L KVT +K L S
Sbjct: 115 KELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELAS 167
>gi|414586495|tpg|DAA37066.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 115
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
R FKN++SLE+CGG +TDAGVK+IKDL +LTLLNLSQN LTDKTLELISGLT LVSLN
Sbjct: 4 FRFFKNIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLN 63
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
VSNSR++++GL HLKPL+NLRSL+LESC+VTA+++ +L+ LPNL+S RPE
Sbjct: 64 VSNSRVSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 115
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 26/105 (24%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G+ N+K L L LN+ +TD ++ +SGLT L SL +S S+V++SG+ +LK
Sbjct: 23 AGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLK---- 78
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL 250
LQ L L+LE C VTA+ +D L
Sbjct: 79 ----------------------PLQNLRSLSLESCRVTASEMDKL 101
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ 385
N++ LE+ + +G++++ L L +NLS G ++D +L ++GL++L SLN+ +
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
++++GL L L L L L R+T S LR
Sbjct: 69 VSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLR 102
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+QSL+ + I+D G+++++ L LT L+ +N +T + ++ +GL LV L++
Sbjct: 9 NIQSLEVCGGL-ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNS 67
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQ 186
+ GL +LK L L SL+++ C +T S+M L L NL S++
Sbjct: 68 RVSNSGLHHLKPLQNLRSLSLESCR-VTASEMDKLRLVALPNLISVR 113
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGAR 409
N++S+ + I+D ++ + L +L LNL ++TD L ++ LT L L++ +R
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 410 ITDSGAAYLRNFKNLRSLEI 429
+++SG +L+ +NLRSL +
Sbjct: 69 VSNSGLHHLKPLQNLRSLSL 88
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ ++ +D AL L L Q + DK +++I S ++L+S+++S S V++SGL HLK
Sbjct: 20 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELI-SGLTALVSLNVSNSRVSNSGLHHLK 78
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSL 111
NL+SL C +++ ++ LR L NL S+
Sbjct: 79 PLQNLRSLSLESC-RVTASEMDKLRLVALPNLISV 112
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 290 ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
ITD + ++K L L LNL G + D+ L ++GL L L +S+++V +SGL HL
Sbjct: 20 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKP 79
Query: 349 LTNLESINLSFTGISDGSLRKL 370
L NL S++L ++ + KL
Sbjct: 80 LQNLRSLSLESCRVTASEMDKL 101
>gi|46447250|ref|YP_008615.1| hypothetical protein pc1616 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400891|emb|CAF24340.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 813
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 153/436 (35%), Positives = 230/436 (52%), Gaps = 16/436 (3%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD + C + D GL HL L+ L L + T G+ L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427
Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
++L LDL + + G GL +L L+ L L + C +TD+ + L+ L L+ L +S
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487
Query: 189 CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVF-LTSLQKLTL-LNLEGCP-VTA 244
C +TD G+ +L L ++ + LC + H+ LT+L+ L L L+L C +T
Sbjct: 488 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTD 547
Query: 245 ACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLT 302
L LS+L +L +L+L+ R L+D G + + +L+ L+L + E +TDE L +L L
Sbjct: 548 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLV 607
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FT 360
L+ L+L I DEGL +L L L+ L L+D ++ GL HL+ L NLE ++LS
Sbjct: 608 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCY 667
Query: 361 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 418
+ L L+ L +L+ LNL + + GL LT L L +LDL G +TD G AYL
Sbjct: 668 HLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYL 727
Query: 419 RNFK--NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+ +L+ L++ G +TD G+ H+ L +L LNLS+ NLTD L + L L
Sbjct: 728 TSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQY 787
Query: 476 LNVSNSR-ITSAGLRH 490
L + + IT AGL H
Sbjct: 788 LELRECKNITDAGLAH 803
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 233/449 (51%), Gaps = 42/449 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L + + D + ++S ++L +DLS S + TD+GL HL +LQ LD +
Sbjct: 379 ALQHLDLSECYLLKDTGLAHLSSL-TALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSK 437
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
++ GL HL L L L +T G+ L+ L LDL C + GLV
Sbjct: 438 SENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLV 497
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-----CSKVTDSGIAYLKGLS 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L
Sbjct: 498 HLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSS-- 555
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
LT+L+ L L E +T A L L+ L +L +L+L+ C
Sbjct: 556 ---------------------LTALKHLDLSWREN--LTDAGLAHLTPLTALRHLDLSWC 592
Query: 265 Q-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
+ L+D+G + + +L+ L+L ++ITDE L HL L+ L L+L+ C I GL +L
Sbjct: 593 ENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHL 652
Query: 323 TGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 380
T L NL+ L+LS + S L +LS L NL+ +NLS G+ L L L +L+ L+
Sbjct: 653 TSLVNLEHLDLSGCYHLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLD 712
Query: 381 LDA-RQITDTGLAALTSLTG--LTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLT 435
L +TD GLA LTSL G L HLDL G +ITD+G A+L + L+ L + LT
Sbjct: 713 LSGCINLTDQGLAYLTSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLT 772
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
D G+ H+ L +L L L + N+TD L
Sbjct: 773 DTGLAHLVSLVNLQYLELRECKNITDAGL 801
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 61/387 (15%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL L+ LD + C ++D GL HL L L LS + +T G+
Sbjct: 465 NLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHL 524
Query: 128 AGLINLVKLDLER----CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
L L LDL C + GL +L L L+ L++ W +TD+ + L+ LT L
Sbjct: 525 TPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTAL 584
Query: 183 KSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
+ L +S C +TD G+AY LT L L L+L+G
Sbjct: 585 RHLDLSWCENLTDEGLAY--------------------------LTPLVALQYLSLKGSD 618
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T L+ L+ L +L +L+LN C +++ G + + +L+ L+L G + L++L
Sbjct: 619 ITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYLS 678
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L NL+ LNL C G+ +GL +LT L NL+ L+LS + GL +L+ L L+ +L
Sbjct: 679 SLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQHL 738
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAA 416
+G ++ITDTGLA LTSL L HL+L +TD+G A
Sbjct: 739 DLSG---------------------CKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLA 777
Query: 417 YLRNFKNLRSLEI--CGGGLTDAGVKH 441
+L + NL+ LE+ C +TDAG+ H
Sbjct: 778 HLVSLVNLQYLELREC-KNITDAGLAH 803
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 125/379 (32%), Positives = 191/379 (50%), Gaps = 35/379 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
L+ LK L+ L + N I + +SGL N S K+ + ++GL++S
Sbjct: 279 LIELKELLNFARL-YQLNNLINYLEFTVVSGLLNNTSHVNEFEKILNHFSNEIEGLNLSG 337
Query: 208 VIFILCSMII--------RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
F + + ++ CL +F T P+ L L++L +L +L
Sbjct: 338 KDFFTEAHFLALKNCKNLKVLCLKIFYT-------------PIDTG-LAHLTSLTALQHL 383
Query: 260 NLNRCQL-SDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNL-DSCGIGD 316
+L+ C L D G S + +L+ L+L + TD L HL L +L+ L+L S +
Sbjct: 384 DLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSKSENLTG 443
Query: 317 EGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 374
+GL +LT L L+ L LSD + + +GL HL+ L L ++LS ++D L L+ L
Sbjct: 444 DGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLV 503
Query: 375 SLKSLNLD-ARQITDTGLAALTSLTGLTHLDL---FG--ARITDSGAAYLRNFKNLRSLE 428
+L+ L+L +TD GLA LT LT L HLDL G +TD G A+L + L+ L+
Sbjct: 504 ALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLD 563
Query: 429 ICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
+ LTDAG+ H+ L++L L+LS NLTD+ L ++ L L L++ S IT G
Sbjct: 564 LSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEG 623
Query: 488 LRHLKPLKNLRSLTLESCK 506
L HL L LR L+L C+
Sbjct: 624 LEHLAHLSALRHLSLNDCR 642
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 388 DTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDL 445
DTGLA LTSLT L HLDL + D+G A+L + L+ L++ G TDAG+ H+ L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLES 504
SL L+LS++ NLT L ++ L L L +S+ R +T AGL HL PL LR L L
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487
Query: 505 CKVTAND 511
CK +D
Sbjct: 488 CKNLTDD 494
>gi|149176715|ref|ZP_01855326.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844356|gb|EDL58708.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 1266
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 146/495 (29%), Positives = 227/495 (45%), Gaps = 74/495 (14%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P ++DK + + S L S+ L+ + V+D GL L + L SL I+D L H
Sbjct: 272 PHIDDKSLACLKGL-SGLKSLTLNQTSVSDQGLQILNELKGLTSLTI-MQSPITDAALPH 329
Query: 102 LRGLSNLTSLSFRR-----------------------NNAITAQGMKAFAGLINLVKLDL 138
L GLS LTSL+ R + +T+ GM + K++
Sbjct: 330 LTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIET 389
Query: 139 ERCT--------------------RIHGGLVNLKGLMKLESL-NIKWC-NCITDSDMKPL 176
+ T I V G + E +I++ N I D+ +K L
Sbjct: 390 GKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHL 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LKS+ + +TD +L GLS +L L
Sbjct: 450 KHVPRLKSVSFISTSITDDCTRHLSGLS--------------------------ELETLQ 483
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L G +T L +L+ L SL L+L+R ++D G K LK LNLG +TD L
Sbjct: 484 LPGTAITDKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLT 543
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
HLK L LESL L + + GL L L LK L+LS T + +GL+ +S L +L+S++
Sbjct: 544 HLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLS 603
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
L+ T I+ ++ L L+ L +L LD QI DT LA++ LT L L+L ITD+G
Sbjct: 604 LTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKLRSLNLRKTEITDTGMV 663
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
+L N K L+ L + +++AG+K ++ L L L L + ++ D L+ +S + L SL
Sbjct: 664 HLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRE-TDIDDAGLKTLSSIFNLKSL 722
Query: 477 NVSNSRITSAGLRHL 491
++ +++T G+ +
Sbjct: 723 DLYGTKVTDTGMAYF 737
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 149/536 (27%), Positives = 241/536 (44%), Gaps = 78/536 (14%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ G+ + D+ + HLK L+S+ F I+D HL GLS L +L AIT
Sbjct: 433 SIRFFGNQIVDAQVKHLKHVPRLKSVSF-ISTSITDDCTRHLSGLSELETLQLP-GTAIT 490
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ L +L LDL R GLV+LK +L++LN+ +TD+ + L L
Sbjct: 491 DKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNL-GSTRVTDAGLTHLKALP 549
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
L+SL++ + VT +G++ L L + + + + V + L L L+L
Sbjct: 550 KLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPLTETGLQTV--SKLIHLQSLSLTKT 607
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+ +A + L L L L L+ Q+ D +K+ L+ LNL EITD +VHL+
Sbjct: 608 KINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLEN 667
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI----- 355
L L+ L+LD + + GL +L L L L L +T + +GL+ LS + NL+S+
Sbjct: 668 LKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDIDDAGLKTLSSIFNLKSLDLYGT 727
Query: 356 --------------------NLSFTGISDG-----------------------------S 366
NL TG+++
Sbjct: 728 KVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLKQQCPNCRIQASPPLDSGIQSILAK 787
Query: 367 LRKLAGLSSLKSLNLDARQIT----------------DTGLAALTSLTGLTHLDLFGARI 410
L+K G + + L +A Q+ D L+ L L L LD+ GA +
Sbjct: 788 LKKSGGFYTRRRLPENAEQLVVRFYPLPGREKKLSPLDERLSLLNGLKTLYELDVAGADL 847
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
TD+G +L++ LR L++ GG T+ G+K + L L +L + +N +T+ L + +
Sbjct: 848 TDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQI-ENAGITNDQLIQLKEM 906
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
T L + ++IT GL+HL L NL+ L L ++ ++ + L S L NL S
Sbjct: 907 TQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLAS--LENLRSL 960
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 206/440 (46%), Gaps = 47/440 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L+ + + +G+ HL + L +L ++ QI D L + L+ L SL+ R+
Sbjct: 599 LQSLSLTKTKINSAGVKHLVPLTELTTLKLDYT-QIDDTALASIAKLTKLRSLNLRKTE- 656
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT GM L L L L+ + GL +L+ L +L L ++ + I D+ +K LS
Sbjct: 657 ITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETD-IDDAGLKTLSS 715
Query: 179 LTNLKSLQISCSKVTDSGIAYLK--------------GLSISSVIFI------------- 211
+ NLKSL + +KVTD+G+AY G++ + V +
Sbjct: 716 IFNLKSLDLYGTKVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLKQQCPNCRIQASP 775
Query: 212 -----LCSMIIRLFCLHVFLTSLQ--------KLTLLNLEGCPVTAACLDS----LSALG 254
+ S++ +L F T + + L G + LD L+ L
Sbjct: 776 PLDSGIQSILAKLKKSGGFYTRRRLPENAEQLVVRFYPLPGREKKLSPLDERLSLLNGLK 835
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+L+ L++ L+D G + + L+VL L T+E L L L LE L +++ GI
Sbjct: 836 TLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIENAGI 895
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
++ L+ L + LK L Q+ GL+HLSGLTNL+ +NLS I + LA L
Sbjct: 896 TNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLASLE 955
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
+L+SL L+ ++ D GL L L L L L G ITD G LR +L L + +
Sbjct: 956 NLRSLALEHTRVADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTYI 1015
Query: 435 TDAGVKHIKDLSSLTLLNLS 454
TD G+K ++ L L L+L+
Sbjct: 1016 TDRGLKDLETLRGLYRLDLN 1035
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 144/532 (27%), Positives = 239/532 (44%), Gaps = 95/532 (17%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN---- 116
S++L + ++++GL HL + L+ L+ N +++ G+ L+ + F R
Sbjct: 180 SLNLYQTKISNAGLTHLSELKKLKQLEVNET-KVTSAGVAELQEAIPECKILFDRPVLPA 238
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ A+ +K+ G + LD R L S+++ + I D + L
Sbjct: 239 HLKVARQVKSLGGFVRYQDLDQHRL---------------LSSISLSRPH-IDDKSLACL 282
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
GL+ LKSL ++ + V+D G+ L L + + I+ S I H LT L +LT LN
Sbjct: 283 KGLSGLKSLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPH--LTGLSRLTSLN 340
Query: 237 LEGCPVTAACLDSL-----------------SALGSLFYLNLNRCQLS------------ 267
L VT A ++ + SA + + L +C++
Sbjct: 341 LARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIETGKATAPGDSTQ 400
Query: 268 ----------------DDGCEKFSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNL 309
+ K K+ S ++ F N+I D + HLK + L+S++
Sbjct: 401 AQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHLKHVPRLKSVSF 460
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
S I D+ +L+GL L+ L+L T + GL L+ L +LE+++LS +GI+D L
Sbjct: 461 ISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLSRSGITDAGLVS 520
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L LK+LNL + ++TD GL L +L L L L+ +T +G + L L++L++
Sbjct: 521 LKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDL 580
Query: 430 CGGGLTD------------------------AGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
LT+ AGVKH+ L+ LT L L + D L
Sbjct: 581 SLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDY-TQIDDTALA 639
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
I+ LT L SLN+ + IT G+ HL+ LK L+ L+L+ +V+ +K LQS
Sbjct: 640 SIAKLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQS 691
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 201/429 (46%), Gaps = 36/429 (8%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y ++D + IA + + L S++L +++TD+G++HL++ L+ L + ++S+ GL+
Sbjct: 630 YTQIDDTALASIA-KLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDET-RVSNAGLK 687
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-GLMKLES 159
L+ L L L R + I G+K + + NL LDL G+ L+K
Sbjct: 688 SLQSLQQLYRLGLRETD-IDDAGLKTLSSIFNLKSLDLYGTKVTDTGMAYFHDKLIKPTD 746
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSL----QISCSKVTDSGI-AYLKGLSISSVIFI--- 211
LN+ +G+ LK +I S DSGI + L L S +
Sbjct: 747 LNLHGTGVTE-------AGVAMLKQQCPNCRIQASPPLDSGIQSILAKLKKSGGFYTRRR 799
Query: 212 ----LCSMIIRLFCLH-------------VFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
+++R + L L L+ L L++ G +T A L L +
Sbjct: 800 LPENAEQLVVRFYPLPGREKKLSPLDERLSLLNGLKTLYELDVAGADLTDAGLKHLKHVP 859
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
L L LN +++G ++ +++ L+VL + IT++ L+ LK +T L+ L I
Sbjct: 860 ELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIENAGITNDQLIQLKEMTQLKIFILPQNQI 919
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
+ GL +L+GL NLK L LS ++ S G+ HL+ L NL S+ L T ++D L L L
Sbjct: 920 TEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLASLENLRSLALEHTRVADQGLEDLLRLP 979
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L +L LD ITD G L +T L L L ITD G L + L L++ +
Sbjct: 980 RLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTYITDRGLKDLETLRGLYRLDLNDTKV 1039
Query: 435 TDAGVKHIK 443
++ GVK+ +
Sbjct: 1040 SEDGVKNFQ 1048
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 146/540 (27%), Positives = 239/540 (44%), Gaps = 77/540 (14%)
Query: 28 FRDCALQDLC---LGQYPGVNDKWMDVIASQGSSLLSVD---------LSGSDVTDSGLI 75
F++C L+D L Q+P + ++ + L+ + L + ++DSGL
Sbjct: 111 FQNCPLEDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLE 170
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL + L SL+ + +IS+ GL HL L L L +T+ G+ I K
Sbjct: 171 HLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVNETK-VTSAGVAELQEAIPECK 228
Query: 136 -----------LDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSGLTN 181
L + R + GG V + L + L S+++ + I D + L GL+
Sbjct: 229 ILFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPH-IDDKSLACLKGLSG 287
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
LKSL ++ + V+D G+ L L + + I+ S I H LT L +LT LNL
Sbjct: 288 LKSLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPH--LTGLSRLTSLNLARTA 345
Query: 242 VTAACLDSL-----------------SALGSLFYLNLNRCQLSDDGCEKF---------- 274
VT A ++ + SA + + L +C++
Sbjct: 346 VTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIETGKATAPGDSTQAQAAI 405
Query: 275 -------SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
+ I + +V G ++T E ++ N I D + +L +
Sbjct: 406 AALKAQGAHIQNQRVFKNG--KLTSEYFTSIRFFGN---------QIVDAQVKHLKHVPR 454
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
LK + T + RHLSGL+ LE++ L T I+D L L L SL++L+L IT
Sbjct: 455 LKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLSRSGIT 514
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
D GL +L L L+L R+TD+G +L+ L SL++ +T G+ + L
Sbjct: 515 DAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPK 574
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L L+LS LT+ L+ +S L L SL+++ ++I SAG++HL PL L +L L+ ++
Sbjct: 575 LKTLDLSLTP-LTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQI 633
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 144/502 (28%), Positives = 226/502 (45%), Gaps = 69/502 (13%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++ SGL L + +LQ+L+F C + D +HL+ LT L F R+ +T Q +
Sbjct: 92 ISGSGLQSLTNLKHLQNLEFQNC-PLEDDAFQHLKQFPALTHL-FVRHVPLTDQCLVHLK 149
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L GL +L L +L SLN+ + I+++ + LS L LK L+++
Sbjct: 150 DLTQLEVLWLFATQISDSGLEHLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVN 208
Query: 189 CSKVTDSGIAYLK-GLSISSVIFILCSMIIRL-----------FCLHVFLTSLQKLTLLN 236
+KVT +G+A L+ + ++F + L F + L + L+ ++
Sbjct: 209 ETKVTSAGVAELQEAIPECKILFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSIS 268
Query: 237 LEGCPV---TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L + + ACL LS L S L LN+ +SD G + +++ L L + + ITD
Sbjct: 269 LSRPHIDDKSLACLKGLSGLKS---LTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDA 325
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG----- 348
L HL GL+ L SLNL + D G+ ++ L LK L L T V S+G+ +
Sbjct: 326 ALPHLTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKC 385
Query: 349 ----------------------------------------LTNLESINLSFTG--ISDGS 366
LT+ ++ F G I D
Sbjct: 386 KIETGKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQ 445
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
++ L + LKS++ + ITD L+ L+ L L L G ITD G A L + K+L +
Sbjct: 446 VKHLKHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLEN 505
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L++ G+TDAG+ +K L LNL + +TD L + L L SL + N+ +T
Sbjct: 506 LDLSRSGITDAGLVSLKKFPQLKTLNLG-STRVTDAGLTHLKALPKLESLKLYNTSVTGT 564
Query: 487 GLRHLKPLKNLRSLTLESCKVT 508
GL L L L++L L +T
Sbjct: 565 GLSELVTLPKLKTLDLSLTPLT 586
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 211/489 (43%), Gaps = 106/489 (21%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +D++G+D+TD+GL HLK L+ L N GG
Sbjct: 836 TLYELDVAGADLTDAGLKHLKHVPELRVLKLN-------GG------------------- 869
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
T +G+K L L L +E + L+ LK + +L+ + I N IT+ +K LS
Sbjct: 870 NFTEEGLKQLTQLKKLEVLQIENAGITNDQLIQLKEMTQLK-IFILPQNQITEHGLKHLS 928
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
GLTNLK L +S +++ G+ V L SL+ L L L
Sbjct: 929 GLTNLKVLNLSQNRIYSDGM--------------------------VHLASLENLRSLAL 962
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
E V L+ L L L L L+ ++D G K+ SL +L+L ITD L
Sbjct: 963 EHTRVADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLSLNSTYITDRGLKD 1022
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNL---TGLCNLK-------CLELSDTQVGSSGL---- 343
L+ L L L+L+ + ++G+ N CN++ L+ ++ +G
Sbjct: 1023 LETLRGLYRLDLNDTKVSEDGVKNFQRSQPKCNIEYAAPLASSLQYVIQELKEAGANVNV 1082
Query: 344 ---------------RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
HL G+ + + + D L++++ + LK L++ + +
Sbjct: 1083 INQGHHYVIESVEFPNHLQGIFAIHN-RAEKAKVFDSCLKRISEMKDLKRLSMHWAEFDN 1141
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
T L + +LT L+ LDL G+RI D G L+ NL+ L++ +TDAGV + L
Sbjct: 1142 TKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHTQITDAGVAQLAQLQ-- 1199
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L L SL++ +S+ T+A L LK ++ LR L+L+ +++
Sbjct: 1200 ---------------------LNRLYSLDLDHSKTTAACLESLKDMQRLRFLSLQHLELS 1238
Query: 509 ANDIKRLQS 517
A D+++ +
Sbjct: 1239 AADLEKFKQ 1247
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 145/323 (44%), Gaps = 41/323 (12%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F+ L+ + L ++ + L SL+ L L L C L DD + + +L L
Sbjct: 75 FINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLEDDAFQHLKQFPALTHLF 134
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ +TD+CLVHLK LT LE L L + I D GL +L L L L L T++ ++GL
Sbjct: 135 VRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELNSLNLYQTKISNAGLT 194
Query: 345 HLSGLTNLESINLSFTGISDG-----------------------------SLRKLAGLSS 375
HLS L L+ + ++ T ++ ++ L G
Sbjct: 195 HLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVLPAHLKVARQVKSLGGFVR 254
Query: 376 ---------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
L S++L I D LA L L+GL L L ++D G L K L S
Sbjct: 255 YQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQILNELKGLTS 314
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L I +TDA + H+ LS LT LNL++ +TD +E I L L LN+ ++ +TSA
Sbjct: 315 LTIMQSPITDAALPHLTGLSRLTSLNLARTA-VTDAGMEHIIKLKQLKKLNLISTGVTSA 373
Query: 487 GLRHLKPLKNLRSLTLESCKVTA 509
G+ + L +E+ K TA
Sbjct: 374 GMARVH--AALPKCKIETGKATA 394
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 135/314 (42%), Gaps = 64/314 (20%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N ITD+ +K ++ L +++ L K++ SG+
Sbjct: 66 NKITDTQIKFINHLKDIRKLGFYNVKISGSGLQS-------------------------- 99
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LT+L+ L L + CP+ L +L +L + L+D + L+VL L
Sbjct: 100 LTNLKHLQNLEFQNCPLEDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWL 159
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--- 342
+I+D L HL L L SLNL I + GL +L+ L LK LE+++T+V S+G
Sbjct: 160 FATQISDSGLEHLNNLKELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAE 219
Query: 343 --------------------------LRHLSGLTN---------LESINLSFTGISDGSL 367
++ L G L SI+LS I D SL
Sbjct: 220 LQEAIPECKILFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSL 279
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
L GLS LKSL L+ ++D GL L L GLT L + + ITD+ +L L SL
Sbjct: 280 ACLKGLSGLKSLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSL 339
Query: 428 EICGGGLTDAGVKH 441
+ +TDAG++H
Sbjct: 340 NLARTAVTDAGMEH 353
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 48/279 (17%)
Query: 274 FSKIGSLKVLN-LGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
++K GS K ++ + F N+ITD + + L ++ L + I GL +LT L +L+
Sbjct: 49 YAKSGSKKKIDSVSFTNNKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQN 108
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
LE + + +HL L + + ++D L L L+ L+ L L A QI+D+G
Sbjct: 109 LEFQNCPLEDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSG 168
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------ 444
L L +L L L+L+ +I+++G +L K L+ LE+ +T AGV +++
Sbjct: 169 LEHLNNLKELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECK 228
Query: 445 -----------------------------------LSSLTLLNLSQNCNLTDKTLELISG 469
LSS++L ++ DK+L + G
Sbjct: 229 ILFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISL----SRPHIDDKSLACLKG 284
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L+GL SL ++ + ++ GL+ L LK L SLT+ +T
Sbjct: 285 LSGLKSLTLNQTSVSDQGLQILNELKGLTSLTIMQSPIT 323
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 90/167 (53%), Gaps = 1/167 (0%)
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
++S++ + I+D ++ + L ++ L +I+ +GL +LT+L L +L+ +
Sbjct: 57 KIDSVSFTNNKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPL 116
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
D +L+ F L L + LTD + H+KDL+ L +L L ++D LE ++ L
Sbjct: 117 EDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFA-TQISDSGLEHLNNL 175
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L SLN+ ++I++AGL HL LK L+ L + KVT+ + LQ
Sbjct: 176 KELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQE 222
>gi|298709085|emb|CBJ31033.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
Length = 573
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 162/288 (56%), Gaps = 12/288 (4%)
Query: 247 LDSLSALGSLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVHLKG 300
L LSA GS +L+ C +L++ G S + L+ L+L + +E L G
Sbjct: 289 LSRLSA-GSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNCRVYSCVEELAQKLPG 347
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT +LNLD C +GD G+ L+ L L+ L L+DT + +G+ HL+ LT L +NL F
Sbjct: 348 LT---ALNLDRCNVGDTGVRALSSLTKLERLNLADTSITDAGMTHLAPLTRLRDLNLFFC 404
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LR 419
I+D L LA LS+L LNLD R + D G+ LT L L LD+F A ITD G A+ L
Sbjct: 405 HITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHGLC 464
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
L +LE+C G LTD G+ H+ + SLT LN+SQN +T + + LT L SLN+S
Sbjct: 465 RLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLNLS 524
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
+ IT + L L L NL SL++ C++ D++ L+ + LPNL R
Sbjct: 525 SCNITPSSLNSLTGLVNLESLSVFGCRLEMTDLELLREK-LPNLRVVR 571
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 145/322 (45%), Gaps = 61/322 (18%)
Query: 138 LERCTRIHGGLVNLKGLMKLES-----LNIKWCNCI--TDSDMKPLSGLTNLKSLQISCS 190
LER G+ N +GL +L + ++ C C+ T+S LS L +L++L +S
Sbjct: 274 LERVCLARSGIGN-EGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNC 332
Query: 191 KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL 250
+V C+ L LT LNL+ C V + +L
Sbjct: 333 RVYS--------------------------CVEELAQKLPGLTALNLDRCNVGDTGVRAL 366
Query: 251 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
S+L L LNL ++D G + + L+ LNL F ITD L L L+NL LNLD
Sbjct: 367 SSLTKLERLNLADTSITDAGMTHLAPLTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLD 426
Query: 311 SCGIGDEGLVNLT----------------------GLCNLKC---LELSDTQVGSSGLRH 345
+ +GD G+V LT GLC L C LE+ ++ GL H
Sbjct: 427 TRDVGDAGMVQLTRLRLLESLDVFSASITDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYH 486
Query: 346 LSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
LS + +L +N+S GI+ +R + L+ L+SLNL + IT + L +LT L L L
Sbjct: 487 LSRVKSLTRLNVSQNFGITAAGVRHVGTLTRLRSLNLSSCNITPSSLNSLTGLVNLESLS 546
Query: 405 LFGARITDSGAAYLRN-FKNLR 425
+FG R+ + LR NLR
Sbjct: 547 VFGCRLEMTDLELLREKLPNLR 568
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 130/286 (45%), Gaps = 29/286 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNL-QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
V L+ S + + GL L S L + LD C+++++ G L L +L +L +N
Sbjct: 277 VCLARSGIGNEGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDL--SNCRV 334
Query: 121 AQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
++ A L L L+L+RC G+ L L KLE LN+ + ITD+ M L+ L
Sbjct: 335 YSCVEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLADTS-ITDAGMTHLAPL 393
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLS-----------ISSVIFILCSMIIRLFCLHVFLTS 228
T L+ L + +TD+G+ L LS + + + + L L VF S
Sbjct: 394 TRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDVFSAS 453
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+ + + L L L L + +L+D G S++ SL LN+ N
Sbjct: 454 ITDFGVAH------------GLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQN 501
Query: 289 -EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
IT + H+ LT L SLNL SC I L +LTGL NL+ L +
Sbjct: 502 FGITAAGVRHVGTLTRLRSLNLSSCNITPSSLNSLTGLVNLESLSV 547
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPR++ + L R L+ +L AFRDC + L LG+ GV + W+
Sbjct: 22 LPREVVDALLGSLTQHRALSSYALRAFRDCEVTSLALGECRGVRNGWV------------ 69
Query: 62 VDLSGSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
L+ C + +LD + C ++D GL L L +L S S RR + +
Sbjct: 70 ----------RELLQATPCGRCIVTLDLSSCTGLTDTGLSDLPALKSLESASLRRCSGLG 119
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ + L L L C + V NL GL +L SL ++ C I+D ++ L
Sbjct: 120 TEATLCLSNSPGLETLSLAHCPLLDDAAVGNLAGLSRLRSLELEGCENISDEGLRLACRL 179
Query: 180 TNLKSLQIS-CSKVTDSGIAYLK 201
+L L S C +T G+A L+
Sbjct: 180 PSLTCLNASRCHGLTVDGLAGLE 202
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 141/331 (42%), Gaps = 56/331 (16%)
Query: 247 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNL 304
L L AL SL +L RC L + S L+ L+L + D+ V +L GL+ L
Sbjct: 98 LSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLETLSLAHCPLLDDAAVGNLAGLSRL 157
Query: 305 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRHLSGLTNLESINLSF 359
SL L+ C I DEGL L +L CL S T G +GL +G L+ +NL +
Sbjct: 158 RSLELEGCENISDEGLRLACRLPSLTCLNASRCHGLTVDGLAGLEQAAG--GLKRLNLGW 215
Query: 360 TG------------------------------------------ISDGSLRKLAGLSSLK 377
L L L+
Sbjct: 216 CAGLVRGSAAAGGRGGEESDDEDDEDDEDGGGDSDDEGLGGGRRRRRRGRWVLPVLPKLE 275
Query: 378 SLNLDARQITDTGLAALTSLTGLTH-LDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLT 435
+ L I + GL+ L++ + L LDL G R+T+SGA L ++L +L++ +
Sbjct: 276 RVCLARSGIGNEGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNCRVY 335
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
+ + L LT LNL + CN+ D + +S LT L LN++++ IT AG+ HL PL
Sbjct: 336 SCVEELAQKLPGLTALNLDR-CNVGDTGVRALSSLTKLERLNLADTSITDAGMTHLAPLT 394
Query: 496 NLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
LR L L C +T + L + L NLV
Sbjct: 395 RLRDLNLFFCHITDAGLGPLAA--LSNLVRL 423
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 39/216 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++L+ + +TD+G+ HL + L+ L+ FC I+D GL L
Sbjct: 370 TKLERLNLADTSITDAGMTHLAPLTRLRDLNLFFC-HITDAGLGPL-------------- 414
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP- 175
A L NLV+L+L+ G+V L L LESL++ + ITD +
Sbjct: 415 -----------AALSNLVRLNLDTRDVGDAGMVQLTRLRLLESLDV-FSASITDFGVAHG 462
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYL---KGLSISSVI--FILCSMIIRLFCLHVFLTSLQ 230
L L L +L++ ++TD G+ +L K L+ +V F + + +R HV +L
Sbjct: 463 LCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNVSQNFGITAAGVR----HV--GTLT 516
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
+L LNL C +T + L+SL+ L +L L++ C+L
Sbjct: 517 RLRSLNLSSCNITPSSLNSLTGLVNLESLSVFGCRL 552
>gi|224007994|ref|XP_002292956.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
gi|220971082|gb|EED89417.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
Length = 301
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 138/234 (58%), Gaps = 4/234 (1%)
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLE 332
KI +LK L L ++ + D L H + L LE LNLDSC +GD + +L + N+ L+
Sbjct: 69 KINNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLD 128
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L+D + GL ++ ++ ++L + ++ LR L+ ++ L+ LNLD+R+I D GL
Sbjct: 129 LADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L L L LD+F R+TD G +R K L+SLE+CGGG+ D G H+ + +LT LN
Sbjct: 189 HLRDLP-LQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLN 247
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
LSQN +T++ ++ L+ L +LN+SN+ +T LR+ L L+SL L C+
Sbjct: 248 LSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGCR 301
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 123/257 (47%), Gaps = 31/257 (12%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+ NLKSL++ S V D+ +A+ + SL L LNL+
Sbjct: 70 INNLKSLELCYSGVQDNHLAHFR--------------------------SLPMLEELNLD 103
Query: 239 GCPV---TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
C + + A L + + ++ L+L +SD G K ++ +K L+L + +T L
Sbjct: 104 SCHLGDWSIAHLADNNVIPNITSLDLADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGL 163
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
HL +T LE LNLDS IGDEGL +L L L+ L++ +V G + + L+S+
Sbjct: 164 RHLSSMTKLEVLNLDSREIGDEGLKHLRDL-PLQSLDVFSGRVTDLGYGCIRLIKTLQSL 222
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSG 414
L G+ D LA + +L SLNL + IT+ G A+L +L+ L L+L +T
Sbjct: 223 ELCGGGVGDIGCTHLATIPNLTSLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDA 282
Query: 415 AAYLRNFKNLRSLEICG 431
Y + L+SL + G
Sbjct: 283 LRYFSDLSKLKSLALYG 299
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 38/241 (15%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLS 204
L + + L LE LN+ C+ + D + L+ + N+ SL ++ + ++D G++ +
Sbjct: 88 LAHFRSLPMLEELNLDSCH-LGDWSIAHLADNNVIPNITSLDLADADISDFGLSKI---- 142
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
+++ L+L C VT+A L LS++ L LNL+
Sbjct: 143 ----------------------AQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSR 180
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
++ D+G + + L+ L++ +TD C+ +K L+SL L G+GD G +
Sbjct: 181 EIGDEGLKHLRDL-PLQSLDVFSGRVTDLGYGCIRLIK---TLQSLELCGGGVGDIGCTH 236
Query: 322 LTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L + NL L LS + ++ + G L+ L+NL+++NLS T ++ +LR + LS LKSL
Sbjct: 237 LATIPNLTSLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLA 296
Query: 381 L 381
L
Sbjct: 297 L 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 10/233 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG---LSNLTSLSF 113
++L S++L S V D+ L H + L+ L+ + C + D + HL + N+TSL
Sbjct: 71 NNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSC-HLGDWSIAHLADNNVIPNITSLDL 129
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ I+ G+ A + +L L C GL +L + KLE LN+ I D +
Sbjct: 130 ADAD-ISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLD-SREIGDEGL 187
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K L L L+SL + +VTD G ++ + + + + + C H L ++ LT
Sbjct: 188 KHLRDLP-LQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTH--LATIPNLT 244
Query: 234 LLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LNL + +T SL+AL +L LNL+ ++ D FS + LK L L
Sbjct: 245 SLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLAL 297
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNL 453
+ L L+L + + D+ A+ R+ L L + L D + H+ D + ++T L+L
Sbjct: 70 INNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLDL 129
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
+ + +++D L I+ + L++ +TSAGLRHL + L L L+S ++ +K
Sbjct: 130 A-DADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188
Query: 514 RLQSRDLP 521
L RDLP
Sbjct: 189 HL--RDLP 194
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDF---------NFCIQ--------------ISDGG 98
++L ++ D GL HL+D LQSLD CI+ + D G
Sbjct: 175 LNLDSREIGDEGLKHLRDLP-LQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIG 233
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
HL + NLTSL+ +N IT +G + A L NL L+L L L KL+
Sbjct: 234 CTHLATIPNLTSLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLK 293
Query: 159 SLNIKWC 165
SL + C
Sbjct: 294 SLALYGC 300
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 17 SRCLTEVSLEAFRDCALQ--DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
SR + + L+ RD LQ D+ G+ + + +I +L S++L G V D G
Sbjct: 179 SREIGDEGLKHLRDLPLQSLDVFSGRVTDLGYGCIRLI----KTLQSLELCGGGVGDIGC 234
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
HL NL SL+ + +I++ G L LSNL +L+ N A+T ++ F+ L L
Sbjct: 235 THLATIPNLTSLNLSQNERITNRGAASLAALSNLKALNL-SNTAVTPDALRYFSDLSKLK 293
Query: 135 KLDLERC 141
L L C
Sbjct: 294 SLALYGC 300
>gi|46446906|ref|YP_008271.1| hypothetical protein pc1272 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400547|emb|CAF23996.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 618
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 207/446 (46%), Gaps = 83/446 (18%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C ++D GL +L L+ L
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQ---------------- 279
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+L C + GL +L L+ L+ LN+ C +TD+ + L+ LT L L
Sbjct: 280 ---------HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYL 330
Query: 186 QIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVT 243
+S C +TD+G+A+ LT L LT LNL C +T
Sbjct: 331 NLSHCRNITDAGLAH--------------------------LTPLTALTYLNLSSCNNLT 364
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
A L L+ L +L YLNL+ C N +TD L HL L
Sbjct: 365 DAGLAHLTPLTALTYLNLSSC-----------------------NNLTDAGLAHLTPLVT 401
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-T 360
L LNL C D GL +LT L L+ L+L + + +GL HL+ L L +NLS+
Sbjct: 402 LTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCY 461
Query: 361 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYL 418
+D L LA L +L+ L+L+ Q+TD GLA L L LTHLDL +TD+G +L
Sbjct: 462 NFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHL 521
Query: 419 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L+ L++ LTDAG+ H+ L +LT LNLS + TD L ++ L L LN
Sbjct: 522 TPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQDLN 581
Query: 478 VSN-SRITSAGLRHLKPLKNLRSLTL 502
++ T AGL H K L +L L
Sbjct: 582 LNYCENFTDAGLAHFKSLATFPNLNL 607
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 181/386 (46%), Gaps = 61/386 (15%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCS 214
++E LN +TD+ + L NLK L + C +TD+G+AYL L
Sbjct: 227 EIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPL----------- 275
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ--------- 265
T+LQ L NL GC A L L+ L +L +LNL+ C+
Sbjct: 276 ------------TTLQHL---NLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPH 320
Query: 266 -----------------LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 307
++D G + + +L LNL N +TD L HL LT L L
Sbjct: 321 LTLLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYL 380
Query: 308 NLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISD 364
NL SC + D GL +LT L L L LS +GL HL+ L L+ ++L I+D
Sbjct: 381 NLSSCNNLTDAGLAHLTPLVTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITD 440
Query: 365 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFK 422
L L L +L LNL TD GLA L L L HLDL G ++TD+G A+L
Sbjct: 441 AGLAHLTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLV 500
Query: 423 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN- 480
L L++ LTDAG+ H+ L +L L+LS NLTD L ++ L L LN+S+
Sbjct: 501 ALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSC 560
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCK 506
+ T AGL HL PL L+ L L C+
Sbjct: 561 NHFTDAGLTHLTPLLALQDLNLNYCE 586
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 188/418 (44%), Gaps = 64/418 (15%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLL 60
P +I + F++ + LT+ L A ++C L+ L L + + D + + + ++L
Sbjct: 224 FPNEIEELNFSK---NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYL-TPLTTLQ 279
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD------------------------ 96
++L+G ++GL HL LQ L+ + C ++D
Sbjct: 280 HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNIT 339
Query: 97 -GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
GL HL L+ LT L+ N +T G+ L L L+L C + GL +L L
Sbjct: 340 DAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPL 399
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILC 213
+ L LN+ WC TD+ + L+ L L+ L + C +TD+G+A+
Sbjct: 400 VTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAH-------------- 445
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGC 271
LT L LT LNL C T A L L+ L +L +L+LN C QL+D G
Sbjct: 446 ------------LTPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGL 493
Query: 272 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 329
+ + +L L+L N +TD L HL L L+ L+L C + D GL +L L L
Sbjct: 494 AHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALT 553
Query: 330 CLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 385
L LS +GL HL+ L L+ +NL++ +D L L++ +LNL Q
Sbjct: 554 HLNLSSCNHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHFKSLATFPNLNLICYQ 611
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 101/208 (48%), Gaps = 40/208 (19%)
Query: 338 VGSSGLRHLSGLTNLESI---------NLSFT---GISDGSLRKLAGLSSLKSLNL-DAR 384
V SS L S LT E I L+F+ ++D L L +LK L+L + R
Sbjct: 203 VVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECR 262
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--------NFKNLRSLEICGG---- 432
+TD GLA LT LT L HL+L G + ++G A+L N + R+L G
Sbjct: 263 NLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLT 322
Query: 433 --------------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
+TDAG+ H+ L++LT LNLS NLTD L ++ LT L LN+
Sbjct: 323 LLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNL 382
Query: 479 SN-SRITSAGLRHLKPLKNLRSLTLESC 505
S+ + +T AGL HL PL L L L C
Sbjct: 383 SSCNNLTDAGLAHLTPLVTLTHLNLSWC 410
>gi|168701673|ref|ZP_02733950.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 367
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 170/324 (52%), Gaps = 28/324 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+TD +K L+GL NL L + + VTD+G+ L G
Sbjct: 61 VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAG------------------------- 95
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L+ LT L+L VT A + L+AL +L L L+ ++D G ++ + + L L+L
Sbjct: 96 -LKGLTTLDLNSTSVTDAGMKELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSH 154
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
++TD L L L L ++ L++ + D GL L L L L+LS T+V +GL+ L+
Sbjct: 155 TKVTDAGLKELAALKGLTTIRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELA 214
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L L + L T ++D L++LAGL +L L+L +TD GL L +L LTHL LFG
Sbjct: 215 ALKGLTCLGLLGTKVTDAGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFG 273
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
++T G L K L +L + +TDAGVK + L LT L+LS +TD ++ +
Sbjct: 274 TKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSY-TEMTDAGVKAL 332
Query: 468 SGLTGLVSLNVSNSRITSAGLRHL 491
+GL GL +L + +++T AG++ L
Sbjct: 333 AGLKGLTNLELYGTKVTDAGVKEL 356
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 170/332 (51%), Gaps = 31/332 (9%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LSF R +T +G+K AGL NL L+L G+ L GL L +L++ +TD
Sbjct: 56 LSFTR---VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTD 111
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+ MK L+ L NL +L++S VTD+G+ L +L+
Sbjct: 112 AGMKELAALNNLTTLRLSGKGVTDAGLKE--------------------------LAALK 145
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
KL L+L VT A L L+AL L + LN +++D G ++ + + L L+L ++
Sbjct: 146 KLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTEVTDAGLKELAALKKLADLDLSQTKV 205
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
TD L L L L L L + D GL L GL NL L L+ T V +GL+ L+ L
Sbjct: 206 TDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL-NLTDLHLAGTPVTDAGLKELAALK 264
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
NL + L T ++ L++L+GL L +L L+ ++TD G+ L+ L GLT LDL +
Sbjct: 265 NLTHLYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEM 324
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
TD+G L K L +LE+ G +TDAGVK +
Sbjct: 325 TDAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 157/283 (55%), Gaps = 3/283 (1%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
VT L L+ L +L +LNL ++D G ++ + + L L+L +TD + L L
Sbjct: 61 VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELAAL 120
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
NL +L L G+ D GL L L L L+LS T+V +GL+ L+ L L +I L+ T
Sbjct: 121 NNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTE 180
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
++D L++LA L L L+L ++TD GL L +L GLT L L G ++TD+G L
Sbjct: 181 VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL 240
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
NL L + G +TDAG+K + L +LT L L +T L+ +SGL GL +L ++N+
Sbjct: 241 -NLTDLHLAGTPVTDAGLKELAALKNLTHLYLF-GTKVTGVGLKELSGLKGLTTLYLNNT 298
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 523
++T AG++ L LK L +L L ++T +K L + L NL
Sbjct: 299 KVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNL 341
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 159/297 (53%), Gaps = 3/297 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L+ LT LNL VT A + L+ L L L+LN ++D G ++ + + +L L L
Sbjct: 69 LAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELAALNNLTTLRL 128
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+TD L L L L +L+L + D GL L L L + L++T+V +GL+
Sbjct: 129 SGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTEVTDAGLKE 188
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+ L L ++LS T ++D L++LA L L L L ++TD GL L L LT L L
Sbjct: 189 LAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGLN-LTDLHL 247
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G +TD+G L KNL L + G +T G+K + L LT L L+ N +TD ++
Sbjct: 248 AGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLN-NTKVTDAGVK 306
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
+SGL GL +L++S + +T AG++ L LK L +L L KVT +K L S LP
Sbjct: 307 ELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKELNSA-LPK 362
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 130/231 (56%), Gaps = 2/231 (0%)
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L F +TD+ L L GL NL LNL S + D G+ L GL L L+L+ T V +G++
Sbjct: 56 LSFTRVTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMK 115
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L+ L NL ++ LS G++D L++LA L L +L+L ++TD GL L +L GLT +
Sbjct: 116 ELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIR 175
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L +TD+G L K L L++ +TDAG+K + L LT L L +TD L
Sbjct: 176 LNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGL-LGTKVTDAGL 234
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ ++GL L L+++ + +T AGL+ L LKNL L L KVT +K L
Sbjct: 235 KELAGLN-LTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKEL 284
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 154/312 (49%), Gaps = 17/312 (5%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ V DK + +A +L ++L + VTD+G+ L L +LD N ++D G++
Sbjct: 58 FTRVTDKGLKELAGL-KNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTDAGMK 115
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L L+NLT+L +T G+K A L L LDL GL L L L ++
Sbjct: 116 ELAALNNLTTLRL-SGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTI 174
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG---IAYLKGLSISSVIFILCSMII 217
+ +TD+ +K L+ L L L +S +KVTD+G +A LKGL+ C ++
Sbjct: 175 RLNNTE-VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLT--------CLGLL 225
Query: 218 RLFCLHVFLTSLQKLTL--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
L L L L L+L G PVT A L L+AL +L +L L +++ G ++ S
Sbjct: 226 GTKVTDAGLKELAGLNLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELS 285
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ L L L ++TD + L GL L +L+L + D G+ L GL L LEL
Sbjct: 286 GLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYG 345
Query: 336 TQVGSSGLRHLS 347
T+V +G++ L+
Sbjct: 346 TKVTDAGVKELN 357
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Query: 21 TEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
TEV+ ++ A L DL L Q + ++ A +G L + L G+ VTD+GL
Sbjct: 179 TEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKG--LTCLGLLGTKVTDAGL-- 234
Query: 77 LKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
K+ + L D + ++D GL+ L L NLT L + +T G+K +GL L
Sbjct: 235 -KELAGLNLTDLHLAGTPVTDAGLKELAALKNLTHL-YLFGTKVTGVGLKELSGLKGLTT 292
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L G+ L GL L +L++ + +TD+ +K L+GL L +L++ +KVTD+
Sbjct: 293 LYLNNTKVTDAGVKELSGLKGLTTLDLSYTE-MTDAGVKALAGLKGLTNLELYGTKVTDA 351
Query: 196 GIAYL 200
G+ L
Sbjct: 352 GVKEL 356
>gi|397646482|gb|EJK77289.1| hypothetical protein THAOC_00890 [Thalassiosira oceanica]
Length = 702
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 205/417 (49%), Gaps = 61/417 (14%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ IT +GM AF+ L + L C R+ +VN+ L SLN+ C C+TD ++
Sbjct: 293 HGITGKGMLAFSRSPRLHTISLANCRRLTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEA 352
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFIL---CSMIIRLFCLHVFLTSLQK 231
+SGL +L+ L +S C +TD G+ +L L + + + C M I+ + L +L+
Sbjct: 353 MSGLLDLRRLDLSQCDLITDDGLIFLGELDLLEELSLGNKSCGMAIQQRNRSIALKTLR- 411
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L C +T LD L L SL L++N C LS + +G
Sbjct: 412 -----LARCAITNDGLDYLEQLQSLEDLDINGCSLSS------TALGE------------ 448
Query: 292 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
L+ LTNL SL+ C GI L L+ L L+DTQ+ + + ++ L
Sbjct: 449 -----SLEKLTNLNSLDASHCPGI----------LPGLEVLNLADTQISDNAMSKVAKLA 493
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L S++L + +S LR LA L L SLNLD+R I D G R+
Sbjct: 494 GLRSLSLFYCNVSSRGLRHLASLEKLDSLNLDSRDIGDEGRPN---------------RV 538
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
TD G +Y+ K L +L++ GGG+ D G HI + +L LNLSQN ++T++ ++ L
Sbjct: 539 TDLGCSYIAKIKTLTTLQLAGGGVGDLGCAHIATIDALESLNLSQNESITNRGAASLAAL 598
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
+ L +LN+SN+R+TS L+ L L+SL L C + + I+ LQ ++P L R
Sbjct: 599 SNLRALNLSNTRVTSNALKFFHGLSKLQSLALYGCIMEDSPIESLQD-EVPTLRCLR 654
>gi|59802561|gb|AAX07517.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 402
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 149/257 (57%), Gaps = 1/257 (0%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
SL LNL +++D G ++ + L VL+LG ++TD L L+GLTNL + +
Sbjct: 119 SLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEV 178
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
D GL L+GL NL L L T+V GL+ L GLTNL S++L T +D SL +L GL+
Sbjct: 179 TDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLT 238
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
+L LNL ++TD GL LT L L LDL ++TD+G L+ NL L++ G +
Sbjct: 239 NLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSV 298
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
TDAG+K + LS LT+L+L + +T L+ ++GL L SL++ + +T AGL+ L L
Sbjct: 299 TDAGLKELGRLSKLTVLDLG-STKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELSGL 357
Query: 495 KNLRSLTLESCKVTAND 511
NL SL L V+ D
Sbjct: 358 ANLTSLDLFGTPVSDTD 374
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 161/312 (51%), Gaps = 28/312 (8%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
R +LT L+ R +T G+K L L LDL R GL L+GL L + I
Sbjct: 115 RDFISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTW-I 172
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
+ +TD+ +K LSGL NL L + +KVT G+ LKGL+
Sbjct: 173 SAPHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLT------------------ 214
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
LT L+L G T A L L L +L LNL+ +++D G ++ + + +L
Sbjct: 215 --------NLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTKVTDAGLQELTGLANLAS 266
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+L F ++TD L LKGL+NL L+L + D GL L L L L+L T+V +G
Sbjct: 267 LDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTG 326
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
L+ L+GL NL S++L T ++D L++L+GL++L SL+L ++DT L L L+ LT
Sbjct: 327 LKELTGLANLTSLHLRLTAVTDAGLKELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTS 386
Query: 403 LDLFGARITDSG 414
L L +TD G
Sbjct: 387 LRLGRTAVTDVG 398
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 27/283 (9%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ L LN+++ +TD +K + L+ L L + +KVTD+G+ L+GL+
Sbjct: 117 FISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLT--------- 166
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
L ++++ + VT A L LS L +L LNL +++ G ++
Sbjct: 167 -------NLTTWISAPHE----------VTDAGLKELSGLANLTELNLRFTKVTYLGLKE 209
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
+ +L L+L TD L LKGLTNL LNL + D GL LTGL NL L+L
Sbjct: 210 LKGLTNLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTKVTDAGLQELTGLANLASLDL 269
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
T+V +GL+ L GL+NL ++L T ++D L++L LS L L+L + ++T TGL
Sbjct: 270 RFTKVTDAGLQKLKGLSNLAVLDLFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKE 329
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
LT L LT L L +TD+G L NL SL++ G ++D
Sbjct: 330 LTGLANLTSLHLRLTAVTDAGLKELSGLANLTSLDLFGTPVSD 372
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 160/314 (50%), Gaps = 29/314 (9%)
Query: 130 LINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
I+L L+L R T++ GL ++ L KL L++ +TD+ ++ L GLTNL + +
Sbjct: 117 FISLTGLNL-RFTKVTDLGLKEMRSLSKLTVLDLGRTK-VTDAGLQELRGLTNLTTWISA 174
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+VTD+G+ L GL+ + + + + + L L L LT L+L G T A L
Sbjct: 175 PHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKE--LKGLTNLTSLDLFGTSTTDASLA 232
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
L L +L LNL+ +++D G ++ + + +L L+L F ++TD L LKGL+NL L+
Sbjct: 233 ELKGLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLD 292
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L + D GL L L L L+L T+V +GL+ L+GL NL S++L T
Sbjct: 293 LFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLT-------- 344
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+TD GL L+ L LT LDLFG ++D+ L+ L SL
Sbjct: 345 ----------------AVTDAGLKELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLR 388
Query: 429 ICGGGLTDAGVKHI 442
+ +TD G+K +
Sbjct: 389 LGRTAVTDVGIKEL 402
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 142/290 (48%), Gaps = 29/290 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DL + VTD+GL L+ +NL + + +++D GL+ L GL+NLT L+ R
Sbjct: 142 SKLTVLDLGRTKVTDAGLQELRGLTNLTTW-ISAPHEVTDAGLKELSGLANLTELNLRFT 200
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K GL NL LDL + L LKGL L LN+ +TD+ ++ L
Sbjct: 201 K-VTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTK-VTDAGLQEL 258
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+GL NL SL + +KVTD+G+ LKGLS L +L+
Sbjct: 259 TGLANLASLDLRFTKVTDAGLQKLKGLS--------------------------NLAVLD 292
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L G VT A L L L L L+L +++ G ++ + + +L L+L +TD L
Sbjct: 293 LFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLK 352
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
L GL NL SL+L + D L L L L L L T V G++ L
Sbjct: 353 ELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
R+F +L L + +TD G+K ++ LS LT+L+L + +TD L+ + GLT L +
Sbjct: 115 RDFISLTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGR-TKVTDAGLQELRGLTNLTTWIS 173
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
+ +T AGL+ L L NL L L KVT +K L+ L NL S
Sbjct: 174 APHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKG--LTNLTSL 219
>gi|406835528|ref|ZP_11095122.1| hypothetical protein SpalD1_27934 [Schlesneria paludicola DSM
18645]
Length = 590
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 159/557 (28%), Positives = 245/557 (43%), Gaps = 91/557 (16%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L+ F D L DL L P + D+ + +A +SL++++LS + +TD GL HLK +NL+
Sbjct: 71 LKPFSD--LSDLDLHAIP-ILDRDLKELADL-TSLVNLNLSDTRITDRGLFHLKRLTNLE 126
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
++ I+D G++ L L L+ + IT +G++ + NL L L+
Sbjct: 127 TVWLQNT-SITDAGIKELASFERLAELNLS-DTRITDRGLRELSDFQNLTTLWLQNVEMT 184
Query: 145 HGGLVNLKGLMKLESLNIKWCNC-----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
GL LK L + +L++ N ITD ++ LS L L+ L ++ + DSG+
Sbjct: 185 DDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIADSGLTS 244
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
L+ L+ LT+L+L G +T L+ L L L
Sbjct: 245 LR--------------------------RLKHLTVLDLRGTQITDEGLNELRGLHELETF 278
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
L + Q+SD G + +L L +G N+IT L L L L++L+L + D L
Sbjct: 279 KLTKTQISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTDVEL 338
Query: 320 VNLTGLCNLKCLELSDTQVGSSG-------------------------LRHLSGLTNLES 354
L+ + L L LSDT + G L HL LT+L
Sbjct: 339 NRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNHLRDLTHL-- 396
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-------FG 407
+L T I+D L L L L SLNLDA Q+TD L+ L L L L L G
Sbjct: 397 -DLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRTAISGLG 455
Query: 408 AR-----------------ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
+ I D G + K+L++L I G +TD G+ + L L
Sbjct: 456 FKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAELHQLEGLQE 515
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
L + N LTD + + L L +L +S+++IT L +K LKNL L + + ++T +
Sbjct: 516 LRIENNA-LTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRIRNTEITDS 574
Query: 511 DIKRLQSRDLPNLVSFR 527
+ + PN+ FR
Sbjct: 575 GLNGFKDAR-PNVSIFR 590
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 7/286 (2%)
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
E + L L L L+L+ + D ++ + + SL LNL ITD L H
Sbjct: 59 EAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTSLVNLNLSDTRITDRGLFH 118
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
LK LTNLE++ L + I D G+ L L L LSDT++ GLR LS NL ++ L
Sbjct: 119 LKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRITDRGLRELSDFQNLTTLWL 178
Query: 358 SFTGISDGSLRKLAGLSSLKSLN------LDARQITDTGLAALTSLTGLTHLDLFGARIT 411
++D L+ L L ++ +L+ L+ +ITD GL L+ L L HL L I
Sbjct: 179 QNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIA 238
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
DSG LR K+L L++ G +TD G+ ++ L L L++ ++D L + GL
Sbjct: 239 DSGLTSLRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTK-TQISDAGLTALKGLK 297
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L +L + +++IT GL+ L L L++L L +VT ++ RL S
Sbjct: 298 NLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSS 343
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 34/282 (12%)
Query: 271 CEKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
E+ ++ V+ + F E +++ L LK ++L L+L + I D L L L +
Sbjct: 41 IERDAEAPDHPVIGIAFEEAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTS 100
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DAR-- 384
L L LSDT++ GL HL LTNLE++ L T I+D +++LA L LNL D R
Sbjct: 101 LVNLNLSDTRITDRGLFHLKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRIT 160
Query: 385 ---------------------QITDTGLAALTSLTGLTHLDLFG------ARITDSGAAY 417
++TD GL AL L +T LDL RITD G
Sbjct: 161 DRGLRELSDFQNLTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQ 220
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L + LR L + + D+G+ ++ L LT+L+L + +TD+ L + GL L +
Sbjct: 221 LSDLPELRHLYLANIPIADSGLTSLRRLKHLTVLDL-RGTQITDEGLNELRGLHELETFK 279
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519
++ ++I+ AGL LK LKNL +L + S ++T ++ L + D
Sbjct: 280 LTKTQISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLD 321
>gi|325110089|ref|YP_004271157.1| hypothetical protein Plabr_3538 [Planctomyces brasiliensis DSM
5305]
gi|324970357|gb|ADY61135.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 451
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 190/370 (51%), Gaps = 14/370 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+QG+ + +VD + D L HL +Q L + F + G+ L+GL++L LS
Sbjct: 81 AQGN-VTAVDFRSVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSL 138
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ I G+ + +LV L L + GL L GL KL L++++ N I+D +
Sbjct: 139 EKT-LIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTN-ISDEGL 196
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL-HVFLTSLQK- 231
L+ L ++ ++++ +K++D G+ L + I + + + L L + L +L++
Sbjct: 197 PALAELDSISTVKLDRTKISDEGVKTL------AAIPTIRGLGLNLTNLTNTALEALKER 250
Query: 232 --LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
L L ++ + A + L + +L L+L R + D+G E K+ SLK L++
Sbjct: 251 SELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTV 310
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
I+D HL L NLE+L+L+ IGDEG+ +L GL NLK LEL T++ G L L
Sbjct: 311 ISDAGCAHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNL 370
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
T L +NL T I D +L LAGL+ L++LNL ITD GL L L L + L +
Sbjct: 371 TALRELNLEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQ 430
Query: 410 ITDSGAAYLR 419
++D G L+
Sbjct: 431 VSDEGTDALK 440
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 189/382 (49%), Gaps = 32/382 (8%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+ ++DF ++ +D L HL G + L + T+ GM GL +L L LE+
Sbjct: 84 NVTAVDFR-SVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSLEKT 141
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GLV + + L +L ++ + ++D +K L GL L+ L + + ++D G+ L
Sbjct: 142 LIDDAGLVEIGRIPSLVALRLRQTD-VSDEGLKALGGLDKLRELDLRFTNISDEGLPALA 200
Query: 202 GL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
L SIS+V L+ ++ + +L+A+ ++ L
Sbjct: 201 ELDSISTV---------------------------KLDRTKISDEGVKTLAAIPTIRGLG 233
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
LN L++ E + L L + +I D +VHL+G++NL++L+L +GDEG
Sbjct: 234 LNLTNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFE 293
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
+ L +LK L + DT + +G HL+ L NLE+++L+ T I D + L GL +LK+L
Sbjct: 294 IIGKLKSLKRLSIRDTVISDAGCAHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLE 353
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
L +IT G A L +LT L L+L RI DS L LR+L + +TD G+
Sbjct: 354 LWFTRITPQGTAPLQNLTALRELNLEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLV 413
Query: 441 HIKDLSSLTLLNLSQNCNLTDK 462
H+ L +L ++L N ++D+
Sbjct: 414 HLHGLKNLEFVHLG-NTQVSDE 434
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 160/307 (52%), Gaps = 25/307 (8%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L L LL+LE + A L + + SL L L + +SD+G + + L+ L+L
Sbjct: 127 LQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDL 186
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-------------VNLTGLCN----- 327
F I+DE L L L ++ ++ LD I DEG+ +NLT L N
Sbjct: 187 RFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEA 246
Query: 328 ------LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L LE+ DTQ+ +G+ HL G++NL++++L + D + L SLK L++
Sbjct: 247 LKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSI 306
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
I+D G A L +L L LDL I D G A+L KNL++LE+ +T G
Sbjct: 307 RDTVISDAGCAHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAP 366
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+++L++L LNL ++ + D LE ++GLT L +LN+ + IT GL HL LKNL +
Sbjct: 367 LQNLTALRELNL-EDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVH 425
Query: 502 LESCKVT 508
L + +V+
Sbjct: 426 LGNTQVS 432
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 11/275 (4%)
Query: 238 EGCPVT-AACLDSLSALGSLFYLN---------LNRCQLSDDGCEKFSKIGSLKVLNLGF 287
E P +A +++L A G++ N + +DD + ++ L L
Sbjct: 57 ESTPADDSAAVEALEAAGAILKTNAQGNVTAVDFRSVEAADDALTHLTGTPQVQELYLFG 116
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
T + L+GL +L L+L+ I D GLV + + +L L L T V GL+ L
Sbjct: 117 PGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALG 176
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
GL L ++L FT ISD L LA L S+ ++ LD +I+D G+ L ++ + L L
Sbjct: 177 GLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNL 236
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+T++ L+ L +LE+ + DAG+ H++ +S+L L+L ++ ++ D+ E+I
Sbjct: 237 TNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRD-DVGDEGFEII 295
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L L L++ ++ I+ AG HL L+NL +L L
Sbjct: 296 GKLKSLKRLSIRDTVISDAGCAHLANLENLETLDL 330
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 139/304 (45%), Gaps = 30/304 (9%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
LT ++ L L G T+A + L L L L+L + + D G + +I SL L
Sbjct: 101 THLTGTPQVQELYLFGPGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVAL 160
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
L +++DE L L GL L L+L I DEGL L L ++ ++L T++ G+
Sbjct: 161 RLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGV 220
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ L+ + + + L+ T +++ +L L S L +L +D QI D G+ L ++ L +L
Sbjct: 221 KTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNL 280
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
L + D G + K+L+ L I ++DAG H+ +L +L L+L++
Sbjct: 281 SLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHLANLENLETLDLNETF------ 334
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
I G+ HL LKNL++L L ++T LQ NL
Sbjct: 335 -------------------IGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQ-----NL 370
Query: 524 VSFR 527
+ R
Sbjct: 371 TALR 374
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 30/229 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L+++++ + + D+G++HL+ SNLQ+L + D G E + L +L LS R+
Sbjct: 251 SELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRD-DVGDEGFEIIGKLKSLKRLSI-RD 308
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I+ G A L NL LDL G+ +L GL L++L + W IT PL
Sbjct: 309 TVISDAGCAHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLEL-WFTRITPQGTAPL 367
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
LT L+ L + +++ DS + L GL+ +L LN
Sbjct: 368 QNLTALRELNLEDTRIDDSALEPLAGLT--------------------------ELRTLN 401
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLN 284
L+ P+T L L L +L +++L Q+SD+G + + + +KV N
Sbjct: 402 LKLTPITDEGLVHLHGLKNLEFVHLGNTQVSDEGTDALKAAVPGVKVQN 450
>gi|46446912|ref|YP_008277.1| hypothetical protein pc1278 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400553|emb|CAF24002.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 731
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 145/450 (32%), Positives = 217/450 (48%), Gaps = 82/450 (18%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL++L C +++D GL +L
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYL----------------------- 368
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L++L L+L C ++ GL +L L+ L LN+ CN +T++ + L L L+
Sbjct: 369 --APLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQH 426
Query: 185 LQISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L +SC + +TD+G+A+L L +LQ L L E +T
Sbjct: 427 LDLSCCRNLTDAGLAHLAP-----------------------LVALQHLCL--SECTNLT 461
Query: 244 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 301
A L L L +L +LNLN C +L+D G + + +L+ L+L +TD L HL+ L
Sbjct: 462 GAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPL 521
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS- 358
L+ L+L+ C D GL +LT L L+ L LS + + +GL +L L L +NL+
Sbjct: 522 VALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAG 581
Query: 359 FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
+D L LA L +L+ LNL D ++T+ GL LT L L HLDL
Sbjct: 582 CHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECE-------- 633
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
LTDAG+ H+ L +LT L+LS+ LTD L ++ L L LN
Sbjct: 634 ---------------KLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLN 678
Query: 478 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
++ ++T AGL HL PL L+ L L CK
Sbjct: 679 LNWCDKLTDAGLAHLTPLLALQDLYLGYCK 708
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 131/396 (33%), Positives = 200/396 (50%), Gaps = 39/396 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL++L +LQ L+ CI+++D GL HL L L L+ N +T G+
Sbjct: 360 LTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLR 419
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L+ L+ L + C +T + + L L NL+ L +
Sbjct: 420 PLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNL 479
Query: 188 -SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAA 245
SC K+TD+G+A+ LT L L L+L C +T A
Sbjct: 480 NSCYKLTDAGLAH--------------------------LTPLMALQHLDLSCCRNLTDA 513
Query: 246 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTN 303
L L L +L +L+LN C+ +D G + + +L+ LNL +TD L +L L
Sbjct: 514 GLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVA 573
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 360
L LNL C D GL +L L L+ L L D ++ ++GL HL+ L L+ ++LS
Sbjct: 574 LSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECE 633
Query: 361 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 418
++D L L L +L L+L + ++TD GLA LT L L HL+L + ++TD+G A+L
Sbjct: 634 KLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHL 693
Query: 419 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNL 453
L+ L + T+ G+ H K SS+ L+L
Sbjct: 694 TPLLALQDLYLGYCKNFTEVGLAHFK--SSVAPLHL 727
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 168/346 (48%), Gaps = 35/346 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T++GL+HL+ LQ LD + C ++D GL HL L L L +T G+
Sbjct: 410 LTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLK 469
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+NL L+L C ++ GL +L LM L+ L++ C +TD+ + L L L+ L +
Sbjct: 470 PLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDL 529
Query: 188 SCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAA 245
+C K TD+G+ + LT L L LNL C +T A
Sbjct: 530 NCCKNFTDAGLTH--------------------------LTPLVALQHLNLSCCRNLTDA 563
Query: 246 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTN 303
L L L +L +LNL C +D G + + +L+ LNLG +T+ L HL L
Sbjct: 564 GLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVA 623
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 360
L+ L+L C + D GL +L L L L+LS+ ++ +GL HL+ L L+ +NL++
Sbjct: 624 LQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCD 683
Query: 361 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 405
++D L L L +L+ L L + T+ GLA S HL +
Sbjct: 684 KLTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFKSSVAPLHLKI 729
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS D +TD+GL HL LQ L+ N+C +++D GL HL L L L
Sbjct: 648 ALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYC 707
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
T G+ F + + L + R
Sbjct: 708 KNFTEVGLAHFKSSVAPLHLKIIR 731
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLR 489
LTDA + +K+ +L L+L + LTD L ++ L L LN+ + ++T AGL
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391
Query: 490 HLKPLKNLRSLTLESCKVTAN 510
HL PL LR L L C N
Sbjct: 392 HLTPLVALRHLNLMGCNKLTN 412
>gi|325182005|emb|CCA16458.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 708
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 138/467 (29%), Positives = 228/467 (48%), Gaps = 11/467 (2%)
Query: 67 SDVTDSGLIHLKD--CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SDV DS L L +QSLDF++C ++ GL+ L NL +F + + +
Sbjct: 245 SDVDDSWLEALPTHAIEQIQSLDFSYCHRLQFCGLKPQSRLPNLRVANFEGCLYLKPETI 304
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L+ L+L C I L +L+ L +L++L++ C IT+ ++ L+GL LK
Sbjct: 305 QRLGFSNRLISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLK 364
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP- 241
L ++ C V++ + + V L I LH F L+++ L L+GC
Sbjct: 365 RLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCSISDIALH-FTGRLREIHSLMLKGCSR 423
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+T L L +L L L++ C+ ++++++ LK+ F E L +K
Sbjct: 424 ITTKGLSHLGSLSKLRRLDVRYCKHVAGLSKEWTQLDMLKLACTEFKEADASILATMK-- 481
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFT 360
L L+L C + ++ L +L L +++T + L L L L+ +++S T
Sbjct: 482 -TLHELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDVSCT 540
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
++D ++ L L L+LD IT+ L + L L L+LF A +TD G L+
Sbjct: 541 EVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEALKR 600
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
L+ L+IC GG+ GVK + L L LNLSQN + +++ + LT L LN+SN
Sbjct: 601 LDKLQDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLNLSN 660
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
+ ITS+ L +L LK L SL++ + ++ I LQ +LP+L R
Sbjct: 661 TGITSSCLHNLFALKELESLSVYGVVLESSQIDELQE-NLPHLKVLR 706
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 160/351 (45%), Gaps = 33/351 (9%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + V+++ + +L+ +DLS ++D L + SL C
Sbjct: 363 LKRLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCS 422
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+ GL HL LS L L R + G+ ++++KL CT ++
Sbjct: 423 RITTKGLSHLGSLSKLRRLDVRYCKHVA--GLSKEWTQLDMLKLA---CTEFKEADASIL 477
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
MK L L+++ C + +S L +L L ++ + +TD + +
Sbjct: 478 ATMKTLHELDLR-CCLVAKGCFSFVSHLNSLVRLCVAETALTDES------------LIM 524
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
LC SL+KL +L++ VT + + LG L L+L+ +++
Sbjct: 525 LCK-------------SLEKLQMLDVSCTEVTDSGTMEIEMLGELSELHLDTPGITNRSL 571
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
E+ K+ L LNL +TDE + LK L L+ L++ S G+G G+ L+ L L+ L
Sbjct: 572 ERVGKLKKLARLNLFAASVTDEGVEALKRLDKLQDLDICSGGVGHRGVKALSQLKRLRSL 631
Query: 332 ELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
LS + ++ S + HL LT L +NLS TGI+ L L L L+SL++
Sbjct: 632 NLSQNKEIRSQSVVHLEALTKLRFLNLSNTGITSSCLHNLFALKELESLSV 682
>gi|168701031|ref|ZP_02733308.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 389
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 154/310 (49%), Gaps = 25/310 (8%)
Query: 223 HVFLTSLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
VFL+ +T ++L G T A L LS L LNL Q++D + ++ L
Sbjct: 35 RVFLSD-GAVTGVDLSGAKTFTDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLT 93
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
VLN+ + +ITDE L + GLT L L LD + GL +L L L+ L L V +
Sbjct: 94 VLNVSYTQITDEGLREIAGLTELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDA 153
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
GLR L G+ L ++L T ++D L+++A LS LK+L L +T GL L LT L
Sbjct: 154 GLRGLVGVRGLRQLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQ 213
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ------ 455
L L G RIT G + L K+LR LE+ G LTDAG+K + +L L LS
Sbjct: 214 FLFLSGTRITGDGLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGA 273
Query: 456 -----------------NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
+ +TD L+ I+ LT L L + ++ +T AG+R+L PL LR
Sbjct: 274 GLKELAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLR 333
Query: 499 SLTLESCKVT 508
L L KVT
Sbjct: 334 RLNLTHTKVT 343
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 177/363 (48%), Gaps = 28/363 (7%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
+++ TD+ +K LS L +L ++ ++VTD A LK ++
Sbjct: 46 VDLSGAKTFTDAGLKELSLFAGLTNLNLTNTQVTD---AALKDVA--------------- 87
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
KLT+LN+ +T L ++ L L L L+ ++S G + + +
Sbjct: 88 --------RFPKLTVLNVSYTQITDEGLREIAGLTELTDLVLDYTKVSGSGLKHLAALTK 139
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L+ L+LG +TD L L G+ L L+L + D GL + L LK L L + V
Sbjct: 140 LRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVT 199
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
GL+ L+ LT L+ + LS T I+ L +L GL SL+ L L +TD GL L
Sbjct: 200 GPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDT 259
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L HL L ++T +G L K L L++ +TDA +K I L++LT L + ++ +
Sbjct: 260 LGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTM-RDTPV 318
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519
TD + ++ LT L LN++++++T+A + L K+L S+ L VT K L++
Sbjct: 319 TDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLTSVDLHQTDVTEEGGKELKAA- 377
Query: 520 LPN 522
LPN
Sbjct: 378 LPN 380
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 157/334 (47%), Gaps = 29/334 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +++L+ + VTD+ L + L L+ ++ QI+D GL + GL+ LT L
Sbjct: 66 AGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYT-QITDEGLREIAGLTELTDLVLDYT 124
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ G+K A L L L L GL L G+ L L+++ + +TD+ +K +
Sbjct: 125 K-VSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETS-VTDAGLKEI 182
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ L+ LK+L + + VT G LK L++ L KL L
Sbjct: 183 APLSELKTLMLVNAPVTGPG---LKDLAL-----------------------LTKLQFLF 216
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L G +T L L+ L SL L L L+D G ++ + +L L L ++T L
Sbjct: 217 LSGTRITGDGLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLK 276
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L L L L+L S I D L + L NL L + DT V +G+R+L+ LT L +N
Sbjct: 277 ELAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLN 336
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+ T +++ + LA L S++L +T+ G
Sbjct: 337 LTHTKVTNACAKTLATFKHLTSVDLHQTDVTEEG 370
>gi|348688896|gb|EGZ28710.1| hypothetical protein PHYSODRAFT_322345 [Phytophthora sojae]
Length = 683
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 223/447 (49%), Gaps = 39/447 (8%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA--ITAQGMKAFAGLINLVKLDLER 140
L L C Q+ D G+ L L +LT+L+ N +T G+ A AG+ +L L+L
Sbjct: 255 LNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNLTDDGISALAGVTSLTSLNLSN 314
Query: 141 CTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
C+++ G+ +L L+ L L +TD+ +K L+ L +L +L I+ C +TD+G +
Sbjct: 315 CSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAGCYNITDAGTS 374
Query: 199 YLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSL 256
L ++SS CS I H + SL K+ LN C VT L S+S L +L
Sbjct: 375 VLANFPNLSSCNLWYCSEIGDTTFEH--MESLTKMRFLNFMKCGKVTDKGLRSISKLRNL 432
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIG 315
L++ C FN +TD+ L L GL L+SL L C GI
Sbjct: 433 TSLDMVSC----------------------FN-VTDDGLNELVGLHRLKSLYLGGCSGIR 469
Query: 316 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGL 373
D+G+ L+ L +L L+LS+ QVG+ L L L NL ++NL I D + LAGL
Sbjct: 470 DDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGL 529
Query: 374 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG 431
LK+LNL + R +TD + +T L + L+ ++TD+G L + L+S+++
Sbjct: 530 KRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLAS 589
Query: 432 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLR 489
LTDA + + LT L+L C LTD+ + + +T L SLN+S IT AGL
Sbjct: 590 CSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLA 649
Query: 490 HLKPLKNLRSLTLESC-KVTANDIKRL 515
HL L NL ++ L C KVT I L
Sbjct: 650 HLAALVNLTNINLWYCTKVTKTGIDHL 676
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 132/397 (33%), Positives = 202/397 (50%), Gaps = 37/397 (9%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD G+ L ++L SL+ + C Q++D G+ L L NL L F +T G+KA
Sbjct: 292 NLTDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKAL 351
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L++L+ LD+ C I G L L S N+ +C+ I D+ + + LT ++ L
Sbjct: 352 APLVDLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLN 411
Query: 187 -ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTA 244
+ C KVTD G+ SIS L+ LT L++ C VT
Sbjct: 412 FMKCGKVTDKGLR-----SIS---------------------KLRNLTSLDMVSCFNVTD 445
Query: 245 ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLT 302
L+ L L L L L C + DDG S++ SL +L+L ++ ++ L+ L L
Sbjct: 446 DGLNELVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELH 505
Query: 303 NLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF- 359
NL +LNL C I DEG+ L GL LK L LS+ + + + ++ +T LESI L +
Sbjct: 506 NLTNLNLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYC 565
Query: 360 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 417
++D + LA L+ L+S++L + ++TD L+ S+ LT LDL +TD G A
Sbjct: 566 NKLTDTGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMAT 625
Query: 418 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 453
L +L SL + G +TDAG+ H+ L +LT +NL
Sbjct: 626 LGKVTSLTSLNLSECGEITDAGLAHLAALVNLTNINL 662
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 33/277 (11%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S++ D+ H++ + ++ L+F C +++D GL + L NLTSL +T G+
Sbjct: 391 SEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNE 450
Query: 127 FAG-------------------------LINLVKLDLERCTRI-HGGLVNLKGLMKLESL 160
G L +LV LDL C ++ + L+ L L L +L
Sbjct: 451 LVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNL 510
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS-ISSVIFILCSMIIR 218
N+ CN I D + L+GL LK+L +S C +TD+ + ++ + S++ C+ +
Sbjct: 511 NLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTD 570
Query: 219 LFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSK 276
++ L SL KL ++L C +T ACL + ++ L L+L N C L+D+G K
Sbjct: 571 TGVMN--LASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGK 628
Query: 277 IGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC 312
+ SL LNL EITD L HL L NL ++NL C
Sbjct: 629 VTSLTSLNLSECGEITDAGLAHLAALVNLTNINLWYC 665
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 35/192 (18%)
Query: 349 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL------------ 394
NL+ +NL+ + ++D S+ +LA + ++S+ L Q+TD G+ AL
Sbjct: 174 FPNLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTESLSSSLTSLN 233
Query: 395 ----------------TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC---GGGL 434
+L L +L L G +++ D G L K+L +L + G L
Sbjct: 234 LGYCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNL 293
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 493
TD G+ + ++SLT LNLS LTD + + L L L +N +T GL+ L P
Sbjct: 294 TDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAP 353
Query: 494 LKNLRSLTLESC 505
L +L +L + C
Sbjct: 354 LVDLITLDIAGC 365
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L S+DL+ S +TD+ L L SLD C ++D G+ L +++LTSL+
Sbjct: 580 TKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSE 639
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
IT G+ A L+NL ++L CT++
Sbjct: 640 CGEITDAGLAHLAALVNLTNINLWYCTKV 668
>gi|46447300|ref|YP_008665.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400941|emb|CAF24390.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 518
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 192/369 (52%), Gaps = 39/369 (10%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K F+ I + E I L+ LK L+ L ++ C+ +TD+ + L+ L L+
Sbjct: 179 LKFFSNEIEALNFS-ENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQ 237
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP- 241
L +S CSK+TD+G+A+L TSL L L+L C
Sbjct: 238 HLNLSYCSKLTDAGLAHL--------------------------TSLVTLQHLDLSKCYN 271
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 299
+T A L L+ L +L +LNL+ C +L+D G + + +L+ L+L + +TD L HL
Sbjct: 272 LTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLT 331
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L L+ LNL C + D GL +LT L L+ L+L+ + GL HL+ L L+ + L
Sbjct: 332 PLAALQHLNLSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLEL 391
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSG 414
S ++D L L L +L+ LNL ++ITD GLA LT L L HLDL G ++TD G
Sbjct: 392 SKCHNLTDAGLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVG 451
Query: 415 AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+L L+ L++ C LTDAG+ H+K L +L LNLS NLTD L LT
Sbjct: 452 LAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLT-- 509
Query: 474 VSLNVSNSR 482
SLN+ SR
Sbjct: 510 TSLNLKLSR 518
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 170/320 (53%), Gaps = 13/320 (4%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+ L
Sbjct: 199 DAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSL 258
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
+ L LDL +C + GL +L L L+ LN+ +C+ +TD+ + L+ L L+ L ++
Sbjct: 259 VTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTW 318
Query: 189 CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAAC 246
C +TD G+A+L L ++ + C + + H LTSL L L+L C +T
Sbjct: 319 CVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAH--LTSLVALQHLDLTWCVNLTEVG 376
Query: 247 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 304
L L+ L +L +L L++C L+D G + + +L+ LNL +ITD L HL L L
Sbjct: 377 LAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVAL 436
Query: 305 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSF-TG 361
+ L+L C + D GL +LT L L+ L+L+ + +GL HL L L+ +NLS+ T
Sbjct: 437 QHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTN 496
Query: 362 ISDGSLRKLAGLSSLKSLNL 381
++D L L++ SLNL
Sbjct: 497 LTDAGLAHFKNLTT--SLNL 514
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 178/360 (49%), Gaps = 60/360 (16%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
++E+LN + D+ + L NLK L + C +TD+G+++L L
Sbjct: 185 EIEALNFSENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPL----------- 233
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
+LQ L NL C +T A L L++L +L +L+L++C L+D G
Sbjct: 234 ------------VTLQHL---NLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLT 278
Query: 273 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 330
+ + +L+ LNL + +++TD L HL L L+ L+L C + D GL +LT L L+
Sbjct: 279 HLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQH 338
Query: 331 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 387
L LS ++ GL HL+ L L+ ++L++ +++ L L L +L+ L L +T
Sbjct: 339 LNLSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLT 398
Query: 388 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 445
D GLA LTSL L HL+L +ITD G A+L L+ L++ G LTD G+ H+ L
Sbjct: 399 DAGLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTL 458
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+L L+L+ NLTD AGL HLKPL L+ L L C
Sbjct: 459 VALQHLDLTCCVNLTD------------------------AGLVHLKPLMALQHLNLSYC 494
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 150/301 (49%), Gaps = 35/301 (11%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL HL LQ LD + C ++D GL HL L+ L L+ + +T G+
Sbjct: 245 SKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAH 304
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C + GL +L L L+ LN+ +C +TD + L+ L L+ L
Sbjct: 305 LTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHL 364
Query: 186 QIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VT 243
++ C +T+ G+A+ LT L L L L C +T
Sbjct: 365 DLTWCVNLTEVGLAH--------------------------LTPLVTLQHLELSKCHNLT 398
Query: 244 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 301
A L L++L +L +LNL+ C +++D G + + +L+ L+L G +++TD L HL L
Sbjct: 399 DAGLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTL 458
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 359
L+ L+L C + D GLV+L L L+ L LS T + +GL H LT S+NL
Sbjct: 459 VALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLTT--SLNLKL 516
Query: 360 T 360
+
Sbjct: 517 S 517
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 10/245 (4%)
Query: 272 EKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 327
+K K S ++ L F+E T D L+ LK NL+ L L C + D GL +L L
Sbjct: 176 KKILKFFSNEIEALNFSENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVT 235
Query: 328 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 384
L+ L LS +++ +GL HL+ L L+ ++LS ++D L L L++L+ LNL
Sbjct: 236 LQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCS 295
Query: 385 QITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHI 442
++TD GLA LTSL L HLDL + +TD G A+L L+ L + LTD G+ H+
Sbjct: 296 KLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHL 355
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 501
L +L L+L+ NLT+ L ++ L L L +S +T AGL HL L L+ L
Sbjct: 356 TSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLN 415
Query: 502 LESCK 506
L CK
Sbjct: 416 LSICK 420
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLSG D +TD GL HL LQ LD C+ ++D GL HL+ L L L+
Sbjct: 435 ALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYC 494
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
+T G+ F L + L L R
Sbjct: 495 TNLTDAGLAHFKNLTTSLNLKLSR 518
>gi|406835014|ref|ZP_11094608.1| hypothetical protein SpalD1_25335 [Schlesneria paludicola DSM
18645]
Length = 497
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 203/418 (48%), Gaps = 32/418 (7%)
Query: 81 SNLQSLDF-NF-CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
S+L +L F NF QI+ L L GL NLTSL F N I+ +G+ L NL L L
Sbjct: 100 SHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFE-NTEISNEGIHELQELKNLTTLSL 158
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
GL NL+ + KL +L++ N I+D K L L +L SL + + D +
Sbjct: 159 HTTHVTDAGLRNLREVSKLTTLSLSG-NSISDDGFKELGELKHLSSLSLRLENIDDVQLD 217
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
+ + L+ L L+L +T + L L + +L
Sbjct: 218 EI--------------------------SKLENLKTLSLHVPSITDSELKQLRTVKNLTK 251
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDE 317
L L +++D G + + +L L+L +ITD L + L NL SL L+ CG I D
Sbjct: 252 LFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDV 311
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
G L + NLK L L+ + G++ L L +LE ++LS T I+D ++++ GL++L
Sbjct: 312 GFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLS 371
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTD 436
+L L ITD GL + L L L L A ITD+G L F N+ L + G+TD
Sbjct: 372 TLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKFHNMNMLHLIQCDGITD 431
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
AG+K ++DL L++ L N+TD ++ + L LNV +++T +G+ LK L
Sbjct: 432 AGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGVNKLKEL 489
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 155/291 (53%), Gaps = 2/291 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L+ L+ LT L+ E ++ + L L +L L+L+ ++D G ++ L L+L
Sbjct: 123 LSGLKNLTSLHFENTEISNEGIHELQELKNLTTLSLHTTHVTDAGLRNLREVSKLTTLSL 182
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N I+D+ L L +L SL+L I D L ++ L NLK L L + S L+
Sbjct: 183 SGNSISDDGFKELGELKHLSSLSLRLENIDDVQLDEISKLENLKTLSLHVPSITDSELKQ 242
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L + NL + L + I+D L+ L L +L L+L + QITD GL + L LT L L
Sbjct: 243 LRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYL 302
Query: 406 FG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
G ITD G LRN KNL+ L + G+TD G+K + L SL LL+LS+ +TD +
Sbjct: 303 EGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSR-TPITDHGI 361
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ I GLT L +L + S IT GLR + L+NL+ L L+S +T +K L
Sbjct: 362 QEIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKEL 412
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 181/376 (48%), Gaps = 28/376 (7%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
IT + + LSGL NL SL +++++ GI L+ L + + + + + + L
Sbjct: 115 ITSARLSDLSGLKNLTSLHFENTEISNEGIHELQELKNLTTLSLHTTHVTDAGLRN--LR 172
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+ KLT L+L G ++ L L L L+L + D ++ SK+ +LK L+L
Sbjct: 173 EVSKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDVQLDEISKLENLKTLSLHV 232
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL---- 343
ITD L L+ + NL L L + I D GL L L NL L+LS TQ+ +GL
Sbjct: 233 PSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIG 292
Query: 344 ---------------------RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
R L + NL+ + L+ GI+D ++ L L SL+ L+L
Sbjct: 293 QLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLS 352
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
ITD G+ + LT L+ L L G+ ITD G + +NL+ L + +TDAG+K +
Sbjct: 353 RTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKEL 412
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 501
++ +L+L Q +TD L+ + L L + R +T AG+ LK K L L
Sbjct: 413 GKFHNMNMLHLIQCDGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILN 472
Query: 502 LESCKVTANDIKRLQS 517
+ + +VT + + +L+
Sbjct: 473 VGATQVTVSGVNKLKE 488
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 135/273 (49%), Gaps = 12/273 (4%)
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L G PVT D +LNL FS + +L N ++IT L
Sbjct: 72 LPGRPVTTIYFDGHGKFNEK-HLNL---------LMPFSHLTTLVFSNFKSSQITSARLS 121
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L GL NL SL+ ++ I +EG+ L L NL L L T V +GLR+L ++ L +++
Sbjct: 122 DLSGLKNLTSLHFENTEISNEGIHELQELKNLTTLSLHTTHVTDAGLRNLREVSKLTTLS 181
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
LS ISD ++L L L SL+L I D L ++ L L L L ITDS
Sbjct: 182 LSGNSISDDGFKELGELKHLSSLSLRLENIDDVQLDEISKLENLKTLSLHVPSITDSELK 241
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
LR KNL L + +TDAG+K + DL +LT L+LS + +TD L+ I L L SL
Sbjct: 242 QLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLS-STQITDAGLKEIGQLENLTSL 300
Query: 477 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ IT G R L+ +KNL+ L L C +T
Sbjct: 301 YLEGCGGITDVGFRELRNIKNLKRLALARCGIT 333
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 181/393 (46%), Gaps = 60/393 (15%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++ L + VTD+GL +L++ S L +L + ISD G + L L +L+SLS R N
Sbjct: 152 NLTTLSLHTTHVTDAGLRNLREVSKLTTLSLSGN-SISDDGFKELGELKHLSSLSLRLEN 210
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDMK 174
Q + + L NL L L + L L K L KL +N K ITD+ +K
Sbjct: 211 IDDVQ-LDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSK----ITDAGLK 265
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
PL L NL L +S +++TD+G+ + L+ LT
Sbjct: 266 PLLDLKNLTDLDLSSTQITDAGLKEIG--------------------------QLENLTS 299
Query: 235 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L LEGC +T L + +L L L RC ++D G + ++ SL++L+L ITD
Sbjct: 300 LYLEGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTPITDH 359
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ + GLTNL +L L I D GL + GL NLK L L + +G++ L N+
Sbjct: 360 GIQEIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKFHNMN 419
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITD 412
++L + ITD GL L L L+ +L+G R +TD
Sbjct: 420 MLHL-----------------------IQCDGITDAGLKELRDLKKLSMFELYGCRNVTD 456
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
+G L+ K L L + +T +GV +K+L
Sbjct: 457 AGIDELKEHKQLTILNVGATQVTVSGVNKLKEL 489
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 140/342 (40%), Gaps = 52/342 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-----------------------CIQ 93
S L ++ LSG+ ++D G L + +L SL
Sbjct: 175 SKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDVQLDEISKLENLKTLSLHVPS 234
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I+D L+ LR + NLT L F N+ IT G+K L NL LDL GL +
Sbjct: 235 ITDSELKQLRTVKNLTKL-FLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQ 293
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L L SL ++ C ITD + L + NLK L ++ +TD G +KGL
Sbjct: 294 LENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITDLG---MKGLG--------- 341
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
L+ L LL+L P+T + + L +L L L ++D G +
Sbjct: 342 --------------QLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLRE 387
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 332
+ + +LK L L ITD + L N+ L+L C GI D GL L L L E
Sbjct: 388 INGLENLKELYLKSAFITDAGMKELGKFHNMNMLHLIQCDGITDAGLKELRDLKKLSMFE 447
Query: 333 LSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
L V +G+ L L +N+ T ++ + KL L
Sbjct: 448 LYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGVNKLKEL 489
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 6/186 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+V R+ L+ L L + G+ D M + Q SL +DLS + +TD G+ +
Sbjct: 308 ITDVGFRELRNIKNLKRLALARC-GITDLGMKGLG-QLKSLELLDLSRTPITDHGIQEIG 365
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+NL +L + I+D GL + GL NL L + ++ IT GMK N+ L L
Sbjct: 366 GLTNLSTL-WLLGSNITDLGLREINGLENLKEL-YLKSAFITDAGMKELGKFHNMNMLHL 423
Query: 139 ERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
+C I GL L+ L KL + C +TD+ + L L L + ++VT SG+
Sbjct: 424 IQCDGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGV 483
Query: 198 AYLKGL 203
LK L
Sbjct: 484 NKLKEL 489
>gi|283780172|ref|YP_003370927.1| hypothetical protein Psta_2397 [Pirellula staleyi DSM 6068]
gi|283438625|gb|ADB17067.1| leucine-rich repeat cysteine-containing subtype [Pirellula staleyi
DSM 6068]
Length = 443
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 184/361 (50%), Gaps = 8/361 (2%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+ ++ SD L+HL+GL +LT L +T G+ G L L LE +
Sbjct: 76 EVKLGVEGSDENLKHLKGLPSLTRLEANVR-GVTDAGLANLDGHPTLRILVLELSSVTDA 134
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS 206
G+ +L L LE + +K C+ +T + L+ + L+ ++ + D +A +K +S
Sbjct: 135 GMEHLTKLPALEDIQLKRCD-LTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQL 193
Query: 207 SVIFIL-CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
++ + C+ + L + KL L + G +T + + +L L+L +
Sbjct: 194 ELLDLQDCNQVTEAGL--APLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSA 251
Query: 266 LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
+ DG + + LK L L G + +TD+ L + GL +LE L L S +G+V+L G
Sbjct: 252 VGVDGMKVIGGLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAG 311
Query: 325 LCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
+ LK L+LS+T + ++GL L+ LTNLE INL +T + D L LAG++ LK LNLD
Sbjct: 312 MSKLKLLDLSETANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDK 371
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 442
Q+TD GL L L+ L L + R+TD+G A L KNL+ L I ++D GV +
Sbjct: 372 CQVTDAGLVHLKGLSNLEFLHIGSTRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKL 431
Query: 443 K 443
+
Sbjct: 432 Q 432
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 186/363 (51%), Gaps = 8/363 (2%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
+D ++K L GL +L L+ + VTD+G+A L G ++ + S + H LT
Sbjct: 84 SDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTDAGMEH--LTK 141
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF- 287
L L + L+ C +T+ +SL+ + +L + + +DD + L++L+L
Sbjct: 142 LPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDC 201
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N++T+ L L G+T L+SL + I D + + NL L L + VG G++ +
Sbjct: 202 NQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIG 261
Query: 348 GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
GL+ L+ + L + ++D +L ++AGL L+ L L + T G+ L ++ L LDL
Sbjct: 262 GLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLS 321
Query: 407 G-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
A I ++G A L NL + + + DAG+ + ++ L LNL + C +TD L
Sbjct: 322 ETANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDK-CQVTDAGLV 380
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND-IKRLQSRDLPNLV 524
+ GL+ L L++ ++R+T GL L+ LKNL+ L + C ++D + +LQ+ LP L
Sbjct: 381 HLKGLSNLEFLHIGSTRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKLQAA-LPGLT 439
Query: 525 SFR 527
Sbjct: 440 KIE 442
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 125/258 (48%), Gaps = 29/258 (11%)
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
G++ + LG E +DE L HLKGL +L L + G+ D GL NL G L+ L L +
Sbjct: 72 GNITEVKLGV-EGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSS 130
Query: 338 VGSSGLRHLSGLTNLESINLSF------------------------TGISDGSLRKLAGL 373
V +G+ HL+ L LE I L T +D L + +
Sbjct: 131 VTDAGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDM 190
Query: 374 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
S L+ L+L D Q+T+ GLA L +T L L ++G ITD+ Y+++ KNL SL +
Sbjct: 191 SQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQS 250
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
+ G+K I LS L L L N+TD L I+GL L L + ++ TS G+ HL
Sbjct: 251 AVGVDGMKVIGGLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLA 310
Query: 493 PLKNLRSLTLESCKVTAN 510
+ L+ L L TAN
Sbjct: 311 GMSKLKLLDLSE---TAN 325
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S+ + G +TD+ + ++KDC NL SL D G++ + GLS L L
Sbjct: 216 TKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVD-GMKVIGGLSKLKELKLYGA 274
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +T + AGL +L L+L T G+V+L G+ KL+ L++ I ++ + L
Sbjct: 275 SNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAAL 334
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LTNL+ + + + V D+G+A L G++ KL LN
Sbjct: 335 APLTNLEEINLWYTFVDDAGLAPLAGMT--------------------------KLKRLN 368
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECL 295
L+ C VT A L L L +L +L++ +++D G + + +LK L + F N+I+D+ +
Sbjct: 369 LDKCQVTDAGLVHLKGLSNLEFLHIGSTRVTDTGLAELEGLKNLKHLVITFCNDISDDGV 428
Query: 296 VHLK----GLTNLE 305
L+ GLT +E
Sbjct: 429 AKLQAALPGLTKIE 442
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 6/186 (3%)
Query: 333 LSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
+++ ++G G L+HL GL +L + + G++D L L G +L+ L L+ +TD
Sbjct: 74 ITEVKLGVEGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTD 133
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
G+ LT L L + L +T G L K LR + D + IKD+S L
Sbjct: 134 AGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQL 193
Query: 449 TLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
LL+L Q+CN +T+ L ++G+T L SL + IT + ++K KNL SL+LE V
Sbjct: 194 ELLDL-QDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAV 252
Query: 508 TANDIK 513
+ +K
Sbjct: 253 GVDGMK 258
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y V+D + +A + L ++L VTD+GL+HLK SNL+ L +++D GL
Sbjct: 347 YTFVDDAGLAPLAGM-TKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIG-STRVTDTGLA 404
Query: 101 HLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLD 137
L GL NL L N I+ G+ K A L L K++
Sbjct: 405 ELEGLKNLKHLVITFCNDISDDGVAKLQAALPGLTKIE 442
>gi|149175912|ref|ZP_01854530.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845359|gb|EDL59704.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 495
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 179/342 (52%), Gaps = 5/342 (1%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+ DS + +S LT + SL I +++TD G+ L+ L ++I + I +
Sbjct: 64 VDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQQLPQV 123
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L +LTL G +T L S L LN+ + +SD G + S+ L+ L L
Sbjct: 124 KLVELTL---GGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHE 180
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+ITDE + ++GL NL+SL L+ I D GL L L L+ L L++T++ +GL+ L
Sbjct: 181 TQITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLE 240
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
LT L + LS T I+D ++ L L +LK L LD Q+TD GL+ + L LD+
Sbjct: 241 RLTRLSKLILSETDITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSN 300
Query: 408 ARITDSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
+ITD+G Y L+N K S+ + G +TDAG+ + L+LS N +TD L+
Sbjct: 301 NQITDAGLIYLLQNGKQWSSINLSGNQITDAGLSILGKSHIELTLDLS-NTEVTDAGLKY 359
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
++ + L L+++N +I+ G++ L L L+S+ L +T
Sbjct: 360 LTSMNMLFGLSLNNCQISDQGVQTLMELPALKSIQLNGTDIT 401
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 241/464 (51%), Gaps = 22/464 (4%)
Query: 3 PRDISQQIFNE----LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSS 58
PRD + Q + ++++ T+ S D + + L + P V+D + V S+ +
Sbjct: 21 PRDKAIQAIRDAGGKVIFAPG-TDESTGNLGDKTVSMVMLNEIP-VDDSIL-VHVSKLTE 77
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+ S+ + G+++TD GL L+D LQSL + QISD G++ L + L L+
Sbjct: 78 VTSLWIIGTEITDQGLTLLRDLQGLQSL-YITNNQISDAGIQQLPQVK-LVELTLG-GTK 134
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + +K F+ +L L++ + GL + KLE L + ITD M+ + G
Sbjct: 135 ITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQ-ITDEGMQQIQG 193
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN-- 236
L NLKSL ++ +++TDSG+ L+ L +F+ + I L L++LT L+
Sbjct: 194 LKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKIT-----GAGLKKLERLTRLSKL 248
Query: 237 -LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
L +T A + L L +L L L++ QL+DDG + SL++L++ N+ITD L
Sbjct: 249 ILSETDITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGL 308
Query: 296 VHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTNLE 353
++L + S+NL I D GL ++ G +++ L+LS+T+V +GL++L+ + L
Sbjct: 309 IYLLQNGKQWSSINLSGNQITDAGL-SILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLF 367
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
++L+ ISD ++ L L +LKS+ L+ ITD L + + + + L L ++TD+
Sbjct: 368 GLSLNNCQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTDA 427
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
G + L+ L+ L + +TDA +K ++ L LNL Q
Sbjct: 428 GFSQLQGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLKQTA 471
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 212/448 (47%), Gaps = 32/448 (7%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V DS L+H+ + + SL + +I+D GL LR L L SL + NN I+ G++
Sbjct: 64 VDDSILVHVSKLTEVTSL-WIIGTEITDQGLTLLRDLQGLQSL-YITNNQISDAGIQQLP 121
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ LV+L L GG ITD +K S ++L +L +
Sbjct: 122 Q-VKLVELTL-------GG------------------TKITDESLKHFSNSSDLNTLNVG 155
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+ V+D G+ Y+ +++ + I + L+ L L L +T + L
Sbjct: 156 KTAVSDRGLQYVSQFKKLERLYLHETQITDEGMQQI--QGLKNLKSLMLNETEITDSGLT 213
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+L L L L LN +++ G +K ++ L L L +ITD + +LK L L+ L
Sbjct: 214 ALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSETDITDADIKYLKELPALKRLY 273
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSL 367
LD + D+GL + +L+ L++S+ Q+ +GL +L SINLS I+D L
Sbjct: 274 LDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYLLQNGKQWSSINLSGNQITDAGL 333
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
L +L+L ++TD GL LTS+ L L L +I+D G L L+S+
Sbjct: 334 SILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSLNNCQISDQGVQTLMELPALKSI 393
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
++ G +TD ++ IK S + +L L + LTD + GLTGL L+++N+ +T A
Sbjct: 394 QLNGTDITDCSLEIIKTKSDMLVLYLD-DTKLTDAGFSQLQGLTGLQILSLNNTAVTDAS 452
Query: 488 LRHLKPLKNLRSLTLESCKVTANDIKRL 515
L+ + L L L+ V+ +++L
Sbjct: 453 LKFFNKMTKLFELNLKQTAVSDAAVQKL 480
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 3/298 (1%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
V ++ L ++T L + G +T L L L L L + Q+SD G ++ ++ L L
Sbjct: 70 VHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQQLPQV-KLVEL 128
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
LG +ITDE L H ++L +LN+ + D GL ++ L+ L L +TQ+ G+
Sbjct: 129 TLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQITDEGM 188
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ + GL NL+S+ L+ T I+D L L L L+ L L+ +IT GL L LT L+ L
Sbjct: 189 QQIQGLKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKL 248
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
L ITD+ YL+ L+ L + LTD G+ I D SL +L++S N +TD
Sbjct: 249 ILSETDITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNN-QITDAG 307
Query: 464 L-ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 520
L L+ S+N+S ++IT AGL L +L L + +VT +K L S ++
Sbjct: 308 LIYLLQNGKQWSSINLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLTSMNM 365
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 179/354 (50%), Gaps = 11/354 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ SL+ F + + L L +G+ V+D+ + + SQ L + L + +TD G+ ++
Sbjct: 135 ITDESLKHFSNSSDLNTLNVGK-TAVSDRGLQYV-SQFKKLERLYLHETQITDEGMQQIQ 192
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
NL+SL N +I+D GL LR L L L F IT G+K L L KL L
Sbjct: 193 GLKNLKSLMLNET-EITDSGLTALRNLDQLEEL-FLNETKITGAGLKKLERLTRLSKLIL 250
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ LK L L+ L + +TD + + +L+ L +S +++TD+G+
Sbjct: 251 SETDITDADIKYLKELPALKRLYLDQTQ-LTDDGLSQIVDFPSLEMLDVSNNQITDAGLI 309
Query: 199 YL--KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
YL G SS+ L I L + S +LTL +L VT A L L+++ L
Sbjct: 310 YLLQNGKQWSSIN--LSGNQITDAGLSILGKSHIELTL-DLSNTEVTDAGLKYLTSMNML 366
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
F L+LN CQ+SD G + ++ +LK + L +ITD L +K +++ L LD + D
Sbjct: 367 FGLSLNNCQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLDDTKLTD 426
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
G L GL L+ L L++T V + L+ + +T L +NL T +SD +++KL
Sbjct: 427 AGFSQLQGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKL 480
>gi|168698219|ref|ZP_02730496.1| hypothetical protein GobsU_01767 [Gemmata obscuriglobus UQM 2246]
Length = 380
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 158/291 (54%), Gaps = 1/291 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L+ LT ++L VT A L L A SL L+L+ ++D G ++ + + +L NL
Sbjct: 68 LLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAPLKNLTAFNL 127
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
++TD L L + NL +L+L I D GL +L + +L L+LSDT+V +GL+
Sbjct: 128 SNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTKVTDAGLKA 187
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+ L L ++ L T ++D L++LA +L L L ++TD GL L L L+ L L
Sbjct: 188 LAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPLKSLSVLVL 247
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+TD+G L KNL +L + G +TDAGVK + +LTLL+LS N+TD ++
Sbjct: 248 GETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLS-GTNVTDAGIK 306
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
++ L L +S++ +T GL+ L LK L L L S K T IK Q
Sbjct: 307 ELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 168/325 (51%), Gaps = 27/325 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+TD ++K L L +L S+ +S + VT++G+ L
Sbjct: 60 VTDEELKELLPLKSLTSIDLSHTGVTNAGLK--------------------------VLV 93
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+ + LT L+L +T A L L+ L +L NL+ +++D G ++ + I +L L+L
Sbjct: 94 AFKSLTTLSLHDTGITDAGLKELAPLKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRK 153
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
EITD L L + +L +L+L + D GL L L L L L +T+V +GL+ L+
Sbjct: 154 TEITDAGLKSLPPMKDLTTLDLSDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELA 213
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
NL + L T ++D L++LA L SL L L ++TD GL L L LT L+L+G
Sbjct: 214 PSKNLAVLLLYNTKVTDAGLKELAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYG 273
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
++TD+G L F+NL L++ G +TDAG+K + +L L LS +TD L+ +
Sbjct: 274 TKVTDAGVKELAPFQNLTLLDLSGTNVTDAGIKELARFKNLAHLELSSTA-VTDVGLKEL 332
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLK 492
+ L L L + +++ T AG++ +
Sbjct: 333 ASLKKLTKLFLISTKTTFAGIKEFQ 357
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 146/280 (52%), Gaps = 1/280 (0%)
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+G VT L L L SL ++L+ +++ G + SL L+L ITD L
Sbjct: 56 QGHRVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKE 115
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L L NL + NL + + D GL LT + NL L L T++ +GL+ L + +L +++L
Sbjct: 116 LAPLKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDL 175
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
S T ++D L+ LA L L +L L ++TDTGL L L L L+ ++TD+G
Sbjct: 176 SDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKE 235
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L K+L L + +TDAG+K + L +LT LNL +TD ++ ++ L L+
Sbjct: 236 LAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKELAPFQNLTLLD 294
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+S + +T AG++ L KNL L L S VT +K L S
Sbjct: 295 LSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELAS 334
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 147/312 (47%), Gaps = 34/312 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL S+DLS + VT++GL L +L +L + I+D GL+ L L NLT+ + N
Sbjct: 73 SLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDT-GITDAGLKELAPLKNLTAFNL-SNT 130
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K + NL L L + GL +L + L +L++ +TD+ +K L+
Sbjct: 131 KVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTK-VTDAGLKALA 189
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
L L +L + ++VTD+G LK L+ S + L +L L
Sbjct: 190 PLERLTNLYLYNTEVTDTG---LKELAPS-----------------------KNLAVLLL 223
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
VT A L L+ L SL L L +++D G ++ + + +L LNL ++TD +
Sbjct: 224 YNTKVTDAGLKELAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKE 283
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---- 353
L NL L+L + D G+ L NL LELS T V GL+ L+ L L
Sbjct: 284 LAPFQNLTLLDLSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFL 343
Query: 354 -SINLSFTGISD 364
S +F GI +
Sbjct: 344 ISTKTTFAGIKE 355
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 143/307 (46%), Gaps = 32/307 (10%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGL 99
+ GV + + V+ + SL ++ L + +TD+GL L NL + FN +++D GL
Sbjct: 81 HTGVTNAGLKVLVA-FKSLTTLSLHDTGITDAGLKELAPLKNLTA--FNLSNTKVTDTGL 137
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + NLT+L R+ IT G+K+ + +L LDL GL L L +L +
Sbjct: 138 KELTAIRNLTALHLRKTE-ITDAGLKSLPPMKDLTTLDLSDTKVTDAGLKALAPLERLTN 196
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
L + + +TD+ +K L+ NL L + +KVTD+G+
Sbjct: 197 LYL-YNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKE-------------------- 235
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
L L+ L++L L VT A L L+ L +L LNL +++D G ++ + +
Sbjct: 236 ------LAPLKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQN 289
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L +L+L +TD + L NL L L S + D GL L L L L L T+
Sbjct: 290 LTLLDLSGTNVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTT 349
Query: 340 SSGLRHL 346
+G++
Sbjct: 350 FAGIKEF 356
>gi|290997932|ref|XP_002681535.1| predicted protein [Naegleria gruberi]
gi|284095159|gb|EFC48791.1| predicted protein [Naegleria gruberi]
Length = 448
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 216/419 (51%), Gaps = 9/419 (2%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+C + K++ S+ L S+D+ G+++ D G ++ + L SL+ + +I
Sbjct: 32 DICYSRIGAEGAKFI----SEMKQLTSLDIGGNEIGDEGSKYISEMKQLTSLNIDNN-RI 86
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G + + + LTSLS NN I +G K+ + + L LD+ G+ + +
Sbjct: 87 GDEGAKSISEMKQLTSLSIN-NNEIGVEGAKSISEMKQLTSLDISGNGIGDKGVKFISEM 145
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCS 214
+L+ L+I N I D K +S + L SL I +++ D G+ + + + + I +
Sbjct: 146 KQLKLLDI-GGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVKSISEMKQLTSLSIYNN 204
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
I + + +++LT L++ G + + S+S + L L+++ + D+G +
Sbjct: 205 RIGDEGAKSI--SEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDISGNGIGDEGAKFI 262
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ LK+L++G NEI DE ++ + L SLN+ + IG EG+ +++ + L L +
Sbjct: 263 SEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVKSISEMKQLTSLYIY 322
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ Q+G G++ +S + L+S+N+ + I D ++ ++ + L SLN+ I D G+ ++
Sbjct: 323 NNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLNIGGNGIGDEGVKSI 382
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
+ + LT L++ RI G+ ++ K L SL+IC + GVK I ++ L L++
Sbjct: 383 SEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDICYNEIGGEGVKSISEMKQLKSLSI 441
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 171/350 (48%), Gaps = 27/350 (7%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N I D K +S + L SL I S++ G F
Sbjct: 12 NQIGDEGAKSISEMKQLTSLDICYSRIGAEGAK--------------------------F 45
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ +++LT L++ G + +S + L LN++ ++ D+G + S++ L L++
Sbjct: 46 ISEMKQLTSLDIGGNEIGDEGSKYISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSI 105
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
NEI E + + L SL++ GIGD+G+ ++ + LK L++ ++G G ++
Sbjct: 106 NNNEIGVEGAKSISEMKQLTSLDISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKY 165
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S + L S+N+ I D ++ ++ + L SL++ +I D G +++ + LT LD+
Sbjct: 166 ISEMKQLTSLNIGENRIGDEGVKSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDI 225
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G I D G + K L SL+I G G+ D G K I ++ L LL++ N + D+ +
Sbjct: 226 SGNGIGDKGVKSISEMKQLTSLDISGNGIGDEGAKFISEMKQLKLLDIGGN-EIGDEGSK 284
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
IS + L SLN+ N+ I G++ + +K L SL + + ++ +K +
Sbjct: 285 YISEMKQLTSLNIYNNEIGVEGVKSISEMKQLTSLYIYNNQIGVEGVKSI 334
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 208/416 (50%), Gaps = 22/416 (5%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERC-TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G K+ + + L LD+ C +RI G + + +L SL+I N I D K
Sbjct: 12 NQIGDEGAKSISEMKQLTSLDI--CYSRIGAEGAKFISEMKQLTSLDI-GGNEIGDEGSK 68
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF----LTSLQ 230
+S + L SL I +++ D G + S + L S+ I + V ++ ++
Sbjct: 69 YISEMKQLTSLNIDNNRIGDEGAKSI------SEMKQLTSLSINNNEIGVEGAKSISEMK 122
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+LT L++ G + + +S + L L++ ++ D+G + S++ L LN+G N I
Sbjct: 123 QLTSLDISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRI 182
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
DE + + + L SL++ + IGDEG +++ + L L++S +G G++ +S +
Sbjct: 183 GDEGVKSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMK 242
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L S+++S GI D + ++ + LK L++ +I D G ++ + LT L+++ I
Sbjct: 243 QLTSLDISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEI 302
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
G + K L SL I + GVK I ++ L LN+ N + DK ++ IS +
Sbjct: 303 GVEGVKSISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYN-EIGDKGVKFISEM 361
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 520
L+SLN+ + I G++ + +K L SL + ++ A +++K+L S D+
Sbjct: 362 KQLISLNIGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDI 417
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 159/311 (51%), Gaps = 25/311 (8%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++L LL++ + S+S + L L++ ++ +G + S++ L L++G N
Sbjct: 1 MKQLKLLDIGENQIGDEGAKSISEMKQLTSLDICYSRIGAEGAKFISEMKQLTSLDIGGN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
EI DE ++ + L SLN+D+ IGDEG +++ + L L +++ ++G G + +S
Sbjct: 61 EIGDEGSKYISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSINNNEIGVEGAKSISE 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLK------------------------SLNLDAR 384
+ L S+++S GI D ++ ++ + LK SLN+
Sbjct: 121 MKQLTSLDISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN 180
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+I D G+ +++ + LT L ++ RI D GA + K L SL+I G G+ D GVK I +
Sbjct: 181 RIGDEGVKSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISE 240
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ LT L++S N + D+ + IS + L L++ + I G +++ +K L SL + +
Sbjct: 241 MKQLTSLDISGNG-IGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYN 299
Query: 505 CKVTANDIKRL 515
++ +K +
Sbjct: 300 NEIGVEGVKSI 310
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 170/344 (49%), Gaps = 30/344 (8%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ DK + I S+ L +D+ G+++ D G ++ + L SL+ +I D G++ +
Sbjct: 133 GIGDKGVKFI-SEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN-RIGDEGVKSI 190
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LTSLS NN I +G K+ + + L LD+ G+ ++ + +L SL+I
Sbjct: 191 SEMKQLTSLSIY-NNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDI 249
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
N I D K +S + LK L I +++ D G Y+
Sbjct: 250 SG-NGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYI---------------------- 286
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
+ +++LT LN+ + + S+S + L L + Q+ +G + S++ LK
Sbjct: 287 ----SEMKQLTSLNIYNNEIGVEGVKSISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKS 342
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
LN+ +NEI D+ + + + L SLN+ GIGDEG+ +++ + L L +S ++G+ G
Sbjct: 343 LNICYNEIGDKGVKFISEMKQLISLNIGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEG 402
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+ +S + L S+++ + I ++ ++ + LKSL++ +Q+
Sbjct: 403 SKFISEMKQLTSLDICYNEIGGEGVKSISEMKQLKSLSIHNQQM 446
>gi|46447142|ref|YP_008507.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400783|emb|CAF24232.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 657
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 139/421 (33%), Positives = 198/421 (47%), Gaps = 64/421 (15%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER------CTRIHGGLVNLKGL 154
HL L N + A + F +IN D+E L+ LK
Sbjct: 274 HLNALKNYLEYTVVSTLLNQAPDLTKFEKIINYFANDIEELNFSRNAYLTDAHLLVLKNC 333
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILC 213
L++L ++ C +TD+ + LS L L+ L + C +TD+G+AYL
Sbjct: 334 KNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYL------------- 380
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 271
+ L+ L LNL T A L LS L +L +LNL C+ L+ DG
Sbjct: 381 -------------SPLENLQHLNLSHSKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGL 427
Query: 272 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 329
S + +L+ L L F +TD L HL L L+ L+L+ C + D GL +LT L L+
Sbjct: 428 THLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQ 487
Query: 330 CLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQI 386
L L + + +GL HLS L NL+ ++L+ ++D L L L +L+ LNL R++
Sbjct: 488 HLNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKL 547
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
TD GLA LT L L +LDLFG R LTDAG+ H+ L
Sbjct: 548 TDAGLAHLTPLVALQYLDLFGCR-----------------------NLTDAGLTHLTPLI 584
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
+L L L NLTD+ L ++ L L L++S S +T+AGLRHL PL L+ L L C
Sbjct: 585 ALQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGC 644
Query: 506 K 506
+
Sbjct: 645 E 645
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 193/367 (52%), Gaps = 37/367 (10%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 164
+++ L+F RN +T + NL L LE C + GL +L L+ L+ L++
Sbjct: 309 NDIEELNFSRNAYLTDAHLLVLKNCKNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFD 368
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
C +TD+ + LS L NL+ L +S SK T++G+A+L L+
Sbjct: 369 CENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHLSPLA------------------- 409
Query: 224 VFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLK 281
+LQ L NL GC +T L LS+L +L +L LN C+ L+D G + + +L+
Sbjct: 410 ----ALQHL---NLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQ 462
Query: 282 VLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQV 338
L+L F + +TD L HL L L+ LNL C + D GLV+L+ L NL+ L+L+D +
Sbjct: 463 HLDLNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNL 522
Query: 339 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS 396
+GL HL+ L L+ +NL ++D L L L +L+ L+L R +TD GL LT
Sbjct: 523 TDAGLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTP 582
Query: 397 LTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 454
L L HL L +TD G A+L L+ L++ LT+AG++H+ L +L L+LS
Sbjct: 583 LIALQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLS 642
Query: 455 QNCNLTD 461
NLTD
Sbjct: 643 GCENLTD 649
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 162/299 (54%), Gaps = 10/299 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ L C ++D GL +L L NL L+ + T G+
Sbjct: 346 NLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHL 405
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L C + G GL +L L+ L+ L + +C +TD+ + L+ L L+ L
Sbjct: 406 SPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLD 465
Query: 187 IS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VT 243
++ C +TD+G+A+L L ++ + C + +H L+ L+ L L+L C +T
Sbjct: 466 LNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLVH--LSPLENLQHLDLNDCYNLT 523
Query: 244 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGL 301
A L L+ L +L +LNL RC +L+D G + + +L+ L+L G +TD L HL L
Sbjct: 524 DAGLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTPL 583
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
L+ L L C + D GL +LT L L+ L+LS + + ++GLRHLS L L+ ++LS
Sbjct: 584 IALQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLS 642
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 193/378 (51%), Gaps = 14/378 (3%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSN 82
+L+ + + + L Q P + K+ +I + + ++ S + +TD+ L+ LK+C N
Sbjct: 277 ALKNYLEYTVVSTLLNQAPDLT-KFEKIINYFANDIEELNFSRNAYLTDAHLLVLKNCKN 335
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L++L C ++D GL HL L L LS +T G+ + L NL L+L
Sbjct: 336 LKALYLEGCKNLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSK 395
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ C +T + LS L L+ L ++ C +TD+G+A+L
Sbjct: 396 HFTNAGLAHLSPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAHL 455
Query: 201 KGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 258
L ++ + C + H LTSL L LNL C +T A L LS L +L +
Sbjct: 456 APLVTLQHLDLNFCDNLTDTGLAH--LTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQH 513
Query: 259 LNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIG 315
L+LN C L+D G + + +L+ LNL ++TD L HL L L+ L+L C +
Sbjct: 514 LDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCRNLT 573
Query: 316 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 373
D GL +LT L L+ L L + GL HL+ L L+ ++LSF + +++ LR L+ L
Sbjct: 574 DAGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPL 633
Query: 374 SSLKSLNLDA-RQITDTG 390
+LK L+L +TD G
Sbjct: 634 VALKYLDLSGCENLTDAG 651
>gi|290970571|ref|XP_002668179.1| predicted protein [Naegleria gruberi]
gi|284081412|gb|EFC35435.1| predicted protein [Naegleria gruberi]
Length = 592
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 124/456 (27%), Positives = 230/456 (50%), Gaps = 18/456 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L SVD+SG+ + G + + L SL+ + I I G + + G+ +LTSL N
Sbjct: 135 LTSVDISGNRIGIEGAKSISEMKQLTSLNISNNI-IGVEGAKSISGMKHLTSLDIS-GNR 192
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G+K+ + + L+ LD+ T + GG + + +L SL+I + N I K +
Sbjct: 193 IGDEGVKSISEMEQLISLDI--STNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLI 249
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV----FLTSLQKL 232
S + L SL IS +++ ++G + S + L S+ I + V ++ +++L
Sbjct: 250 SEMKQLTSLNISTNEID------VEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQL 303
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T LN+ G + +S + L L++ ++ D+G + S++ L ++ N I D
Sbjct: 304 TSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYD 363
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E + G+ L SL + + IG EG+ ++ + L L +S ++ G + +SG+ L
Sbjct: 364 EGAKSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQL 423
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S+ + GI D ++ ++ + L SL++ +I D G+ +++ + L LD+ I
Sbjct: 424 TSLTIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGG 483
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
GA ++ K L SL+I G + D GVK I ++ LT LN+S N + + + IS +
Sbjct: 484 EGAKFISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGN-QIGVEGAKFISEMKQ 542
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L SL++S + I AG + + +K L SL + + +++
Sbjct: 543 LTSLDISKNEIGDAGAKFISEMKQLTSLDVYANRIS 578
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 151/302 (50%), Gaps = 1/302 (0%)
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
S + F F++ +++LT +++ G + S+S + L LN++ + +G
Sbjct: 115 FSSWTLDAFEQPKFISGMKQLTSVDISGNRIGIEGAKSISEMKQLTSLNISNNIIGVEGA 174
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ S + L L++ N I DE + + + L SL++ + IG EG ++ + L L
Sbjct: 175 KSISGMKHLTSLDISGNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSL 234
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
++ ++G G + +S + L S+N+S I + ++ + L SLN+ I G+
Sbjct: 235 DIFYNRIGGEGAKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGV 294
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
+++ + LT L++ G I D GA + K L SL+I + D GVK I ++ LT
Sbjct: 295 KSISGMKQLTSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSF 354
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
++S N + D+ + ISG+ L SL +SN+RI G++ + +K L SL + ++
Sbjct: 355 DISNNL-IYDEGAKSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEG 413
Query: 512 IK 513
K
Sbjct: 414 AK 415
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 187/383 (48%), Gaps = 5/383 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+D+S + + G + + L SLD F +I G + + + LTSL+
Sbjct: 202 SEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLISEMKQLTSLNI 260
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G+ ++ G+ +L SLNI N I D
Sbjct: 261 S-TNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS-GNLIGDEGA 318
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S + L SL I +++ D G+ + + + I ++I + + +++LT
Sbjct: 319 KLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSI--SGMKQLT 376
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L + + + +S + L LN+++ ++ +G + S + L L + N I DE
Sbjct: 377 SLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIYKNGIGDE 436
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ + + L SL++ + IGDEG+ +++ + L L++S +G G + +S + L
Sbjct: 437 GVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLT 496
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
S+++S I D ++ ++ + L SLN+ QI G ++ + LT LD+ I D+
Sbjct: 497 SLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEIGDA 556
Query: 414 GAAYLRNFKNLRSLEICGGGLTD 436
GA ++ K L SL++ ++D
Sbjct: 557 GAKFISEMKQLTSLDVYANRISD 579
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 129/250 (51%), Gaps = 10/250 (4%)
Query: 282 VLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
++N+ F+ T + K G+ L S+++ IG EG +++ + L L +S+ +
Sbjct: 110 IVNVKFSSWTLDAFEQPKFISGMKQLTSVDISGNRIGIEGAKSISEMKQLTSLNISNNII 169
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G G + +SG+ +L S+++S I D ++ ++ + L SL++ I G ++ +
Sbjct: 170 GVEGAKSISGMKHLTSLDISGNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMK 229
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
LT LD+F RI GA + K L SL I + G K I ++ LT LN+S N
Sbjct: 230 QLTSLDIFYNRIGGEGAKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNL- 288
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDI 512
+ + ++ ISG+ L SLN+S + I G + + +K L SL + + ++ + +++
Sbjct: 289 IGVEGVKSISGMKQLTSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEM 348
Query: 513 KRLQSRDLPN 522
K+L S D+ N
Sbjct: 349 KQLTSFDISN 358
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 132/269 (49%), Gaps = 13/269 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ + + D G+ + + L S D + + I D G + + G+ LTSL+
Sbjct: 322 SEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNL-IYDEGAKSISGMKQLTSLTI 380
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + + L L++ + G + G+ +L SL I + N I D +
Sbjct: 381 S-NNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTI-YKNGIGDEGV 438
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL----HVFLTSL 229
K +S + L SL IS +++ D G+ + S + L S+ I + F++ +
Sbjct: 439 KSISEMKQLTSLDISNNRIGDEGVKSI------SEMEQLISLDISTNVIGGEGAKFISEM 492
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
++LT L++ G + + S+S + L LN++ Q+ +G + S++ L L++ NE
Sbjct: 493 KQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNE 552
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEG 318
I D + + L SL++ + I DE
Sbjct: 553 IGDAGAKFISEMKQLTSLDVYANRISDEA 581
>gi|108763744|ref|YP_632240.1| leucine-rich repeat-containing protein [Myxococcus xanthus DK 1622]
gi|108467624|gb|ABF92809.1| leucine-rich repeat domain protein [Myxococcus xanthus DK 1622]
Length = 624
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 149/513 (29%), Positives = 227/513 (44%), Gaps = 71/513 (13%)
Query: 16 YSRCLTEVSLEA--------FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
Y+ L V EA R+ + +L G GV + V Q S ++++ +SG+
Sbjct: 90 YAEPLRPVRTEAEAREIAAVLREHHVPELSFGAV-GVPAPELLVALLQESGVVALQVSGT 148
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D ++ L L++ + L++L N ++++ GL L+ + L L +
Sbjct: 149 DFGNAHLASLENATQLEALHLN-ATRVTNVGLAPLKRMRRLAVLRLDETPV-------SD 200
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL +L + R + G V+ +GL L +P L+ L +
Sbjct: 201 AGLASLSEHTTLRRVTLAGTAVSPQGLGFLAR--------------QP-----GLEELDL 241
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
S + V D+ +A L G + + LNL G VT A L
Sbjct: 242 SDTAVDDTVLAVLPGAPLHT---------------------------LNLSGTKVTNAGL 274
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
LSA+ SL L L R SD + + L+ L+LG ++TD L+HL L L +L
Sbjct: 275 RGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLGSTQVTDAGLLHLAKLPALRAL 334
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
L I GL +L GL L+ L L DT VG S LRHL GL L ++LS T I+ L
Sbjct: 335 VLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELRELDLSRTAITGTGL 394
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
++L+ L +L+SL L +TD L AL L+ LT L L I +L + LR L
Sbjct: 395 QELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHL 454
Query: 428 EICGGGLTDAGVKHIKD----LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
++ G TD V I+ L SL ++ LTD L + T L +++V+ + I
Sbjct: 455 DLSKTGFTDEWVPSIRQAFPGLHSLK----AERTLLTDAGLGQFAEWTELEAIHVAGTLI 510
Query: 484 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
+GL L L L +L L + ++ + K LQ
Sbjct: 511 NGSGLTRLHTLARLTTLDLGATRLDSEGQKALQ 543
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 180/372 (48%), Gaps = 8/372 (2%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSIS 206
L +L+ +LE+L++ +T+ + PL + L L++ + V+D+G+A L + ++
Sbjct: 155 LASLENATQLEALHLN-ATRVTNVGLAPLKRMRRLAVLRLDETPVSDAGLASLSEHTTLR 213
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
V ++ + FL L L+L V L L L LNL+ ++
Sbjct: 214 RVTLAGTAVSPQGLG---FLARQPGLEELDLSDTAVDDTVLAVLPG-APLHTLNLSGTKV 269
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
++ G S + SL+ L L +D L+H+ GL LE+L+L S + D GL++L L
Sbjct: 270 TNAGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLGSTQVTDAGLLHLAKLP 329
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L+ L LS ++ +GLRHL+GL+ LE+++L T + D +LR L GL+ L+ L+L I
Sbjct: 330 ALRALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELRELDLSRTAI 389
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
T TGL L++L L L L G +TD L L L + + + H+
Sbjct: 390 TGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGSRP 449
Query: 447 SLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
L L+LS+ TD+ + I GL SL + +T AGL L ++ +
Sbjct: 450 LLRHLDLSK-TGFTDEWVPSIRQAFPGLHSLKAERTLLTDAGLGQFAEWTELEAIHVAGT 508
Query: 506 KVTANDIKRLQS 517
+ + + RL +
Sbjct: 509 LINGSGLTRLHT 520
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 123/403 (30%), Positives = 191/403 (47%), Gaps = 30/403 (7%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R L++L L V+D + V+ G+ L +++LSG+ VT++GL L +L+ L
Sbjct: 232 RQPGLEELDLSDT-AVDDTVLAVL--PGAPLHTLNLSGTKVTNAGLRGLSAMPSLRRLGL 288
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-G 147
SD L H+ GL L +L + +T G+ A L L L L + RI G G
Sbjct: 289 ARTAA-SDASLLHITGLRELEALHLG-STQVTDAGLLHLAKLPALRALVLSKA-RIRGAG 345
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
L +L GL +LE+L++ + DS ++ L GL L+ L +S + +T +G+ L S
Sbjct: 346 LRHLAGLSRLEALHLD-DTLVGDSALRHLRGLNELRELDLSRTAITGTGLQEL------S 398
Query: 208 VIFILCSMIIRLFCLH----VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
+ L S+ + L L L +LT L L P+ L+ L + L +L+L++
Sbjct: 399 TLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLDLSK 458
Query: 264 CQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
+D+ + F + SLK +TD L T LE++++ I GL
Sbjct: 459 TGFTDEWVPSIRQAFPGLHSLKAER---TLLTDAGLGQFAEWTELEAIHVAGTLINGSGL 515
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKS 378
L L L L+L T++ S G + L G T L + LS G+ G L L SL++
Sbjct: 516 TRLHTLARLTTLDLGATRLDSEGQKALQGFTKL--VWLSVAGVRTGD-EMLGHLPRSLRT 572
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRN 420
L L ++TD GL AL L L LDL G + T++ +A R
Sbjct: 573 LYLTRTKVTDAGLPALHKLPHLRELDLRGTAVSTEARSALARE 615
>gi|383455271|ref|YP_005369260.1| hypothetical protein COCOR_03284 [Corallococcus coralloides DSM
2259]
gi|380733131|gb|AFE09133.1| leucine-rich repeat-containing protein [Corallococcus coralloides
DSM 2259]
Length = 614
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 213/451 (47%), Gaps = 31/451 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+S++S+ LS + + D L L + + LQ+L + +++D GL L+G+ +L L
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLD-GTRVTDAGLASLQGMPHLAVLRLD-A 186
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A++ +G+ A L L +L L + GL L +LE L++ + D+ + L
Sbjct: 187 TAVSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLS-DTTVDDTVLASL 245
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
G L++L +S + VT++G+ L+ + L L
Sbjct: 246 PG-ERLRTLVMSGTHVTNAGLGALR--------------------------RMPALRWLG 278
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L V+ A L L AL L L+L ++D G +++ +L+VL L I +
Sbjct: 279 LARTSVSDAGLAHLGALRMLDALHLGSTGVTDAGLIHLARLPALRVLVLSKTRIRGPGVR 338
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
HL GLT LE L+LD IG+ L +L GL +L+ LELS T V SGL LSGL LES+
Sbjct: 339 HLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRTAVTGSGLPALSGLQALESLG 398
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
LS + D SL L L L L+L A +I L L S L HLDL D A
Sbjct: 399 LSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGSRMVLRHLDLSRTDFNDGWVA 458
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
L+ F L+SL LTD G+ + +L L L +S N ++ L + L LV L
Sbjct: 459 TLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQVSGNP-ISGSGLVPLQKLPHLVKL 517
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
++ + +T G R L + L L+L ++
Sbjct: 518 DLGGTWMTDDGARLLAGFEKLSWLSLAGTRI 548
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 184/389 (47%), Gaps = 24/389 (6%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-------- 199
L L +L++L++ +TD+ + L G+ +L L++ + V+D G+A
Sbjct: 146 LAALANATRLQALHLD-GTRVTDAGLASLQGMPHLAVLRLDATAVSDRGLALLASLTTLR 204
Query: 200 ---LKGLSISSVIFILCSMIIRLFCLHV--------FLTSL--QKLTLLNLEGCPVTAAC 246
L G S+S L + L L + L SL ++L L + G VT A
Sbjct: 205 RLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPGERLRTLVMSGTHVTNAG 264
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L +L + +L +L L R +SD G + L L+LG +TD L+HL L L
Sbjct: 265 LGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTGVTDAGLIHLARLPALRV 324
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L L I G+ +L GL L+ L L DT +G++ LRHL GL +L + LS T ++
Sbjct: 325 LVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRTAVTGSG 384
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
L L+GL +L+SL L + D LAAL L L+ LDL RI L + LR
Sbjct: 385 LPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGSRMVLRH 444
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L++ D V ++ + L L + LTD L +S L L SL VS + I+ +
Sbjct: 445 LDLSRTDFNDGWVATLQTFTQLQSLRAIRTI-LTDLGLGQLSELRELESLQVSGNPISGS 503
Query: 487 GLRHLKPLKNLRSLTLESCKVTANDIKRL 515
GL L+ L +L L L +T +D RL
Sbjct: 504 GLVPLQKLPHLVKLDLGGTWMT-DDGARL 531
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 140/288 (48%), Gaps = 2/288 (0%)
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+L L+L+G VT A L SL + L L L+ +SD G + + +L+ L+L +
Sbjct: 154 RLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATAVSDRGLALLASLTTLRRLSLSGTSV 213
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
+ L L T LE L+L + D L +L G L+ L +S T V ++GL L +
Sbjct: 214 SPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG-ERLRTLVMSGTHVTNAGLGALRRMP 272
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L + L+ T +SD L L L L +L+L + +TD GL L L L L L RI
Sbjct: 273 ALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTGVTDAGLIHLARLPALRVLVLSKTRI 332
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
G +L L L + + +A ++H++ L L L LS+ +T L +SGL
Sbjct: 333 RGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRTA-VTGSGLPALSGL 391
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
L SL +S + A L L+PL+ L L L + ++ +K+L SR
Sbjct: 392 QALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQLGSR 439
>gi|168701995|ref|ZP_02734272.1| hypothetical protein GobsU_20883 [Gemmata obscuriglobus UQM 2246]
Length = 684
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 141/519 (27%), Positives = 220/519 (42%), Gaps = 71/519 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + DL+ V D+ L LKDC L + + +++D GL HL+GLSNL L+ +
Sbjct: 40 ALTAADLTDRAVADADLARLKDCQALTRIILH-GTKVTDAGLAHLKGLSNLAHLNLAYSG 98
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN----------- 166
+T G+ L L ++ T GL + L L +++
Sbjct: 99 -VTDAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKG 157
Query: 167 -----------CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+TD+++ L GLT + L +S + +TD+G+++L L L ++
Sbjct: 158 LKGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLK------ALGTL 211
Query: 216 IIR-LFCLHVFLTSLQKLTLLNLEGCPVT------------------------------- 243
+R L L K ++ GC +
Sbjct: 212 DVRKTRATPASLAELHK----SVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQ 267
Query: 244 ----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
A D +L +NL+ + DD + + L L L +TD L +LK
Sbjct: 268 PRDIRAAADLPQGPLALARVNLSDRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLK 327
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
L L+ L+L + D GL + +L L LS T+V ++GL HL+GL L I+L
Sbjct: 328 NLARLQFLSLTGTDVTDAGLARIRERKSLTTLHLSSTKVTNAGLVHLAGLAGLSHIHLDG 387
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
TG+SD L L GL+ LK+L L ++ GLA S L L L +TD A+L
Sbjct: 388 TGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLTNTGVTDEAFAHLS 447
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
LR L G GLTDAG+ H++ L+ L LNLS + D L + G L V
Sbjct: 448 PHHTLRHLGADGTGLTDAGMAHVRHLTGLISLNLSDTA-VGDAGLMQLGSNAGPTHLTVR 506
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
N+++T GL R++T + ++ + R +R
Sbjct: 507 NTKVTLRGLHAFHATGPWRTVTWDGGQLGPTEADRSAAR 545
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 138/545 (25%), Positives = 218/545 (40%), Gaps = 76/545 (13%)
Query: 30 DCALQDLCLGQYPGVNDKWMD---------VIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
D L DL +P + W+ +A + +L +DLSG+ VT GL HLK
Sbjct: 101 DAGLADL--NAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKGL 158
Query: 81 -------SNLQSLDFNFCI---------------QISDGGLEHLRGLSNLTSLSFRRNNA 118
S D N C ++D GL HL L L +L R+ A
Sbjct: 159 KGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRA 218
Query: 119 ITA---------QGMKAFAGLINLVKLDLERCTR------------------IHGGLVNL 151
A G + + LD+ R I
Sbjct: 219 TPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLP 278
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
+G + L +N+ + D D+ L+G T L L + ++VTD+ + YLK L+ + +
Sbjct: 279 QGPLALARVNLS-DRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSL 337
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
+ + + + LT L+L VT A L L+ L L +++L+ +SD G
Sbjct: 338 TGTDVTDAGLARI--RERKSLTTLHLSSTKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGL 395
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ LK L L + L H L++L L + G+ DE +L+ L+ L
Sbjct: 396 VHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRHL 455
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
T + +G+ H+ LT L S+NLS T + D L +L + L + ++T GL
Sbjct: 456 GADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQLGSNAGPTHLTVRNTKVTLRGL 515
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--------IK 443
A + + G ++ + A + R GG L +GV + K
Sbjct: 516 HAFHATGPWRTVTWDGGQLGPTEA----DRSAARWALAAGGRLRVSGVPNEIVAAGELPK 571
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
+T L L+ ++D L + LTG+ L+++ S IT+ GL HLK L LR L L
Sbjct: 572 RKFVVTELALN-GLAVSDTELAALKYLTGMSRLDLAGSAITNDGLAHLKGLTGLRRLGLS 630
Query: 504 SCKVT 508
+VT
Sbjct: 631 ETRVT 635
>gi|46446626|ref|YP_007991.1| hypothetical protein pc0992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400267|emb|CAF23716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 583
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 138/417 (33%), Positives = 212/417 (50%), Gaps = 73/417 (17%)
Query: 47 KWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ +I + + ++D S + +TD+ L+ LK+C NL+ L C+ I+D GL HL
Sbjct: 216 EFEKIINHFSNEIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHL--- 272
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKW 164
A L+ L LDL C + GL +L L L+ L+++
Sbjct: 273 ----------------------APLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRG 310
Query: 165 CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
C TD+ + L+ LT L+ L +S CS TD+G+A+L
Sbjct: 311 C-YFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTP--------------------- 348
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKV 282
LT+LQ L+L GC +T A L L+ L L +L+L C+ L+D G + +L+
Sbjct: 349 --LTALQH---LDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQH 403
Query: 283 LNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK------CLELS 334
LNL + +TD L HL LT L+ L+L C I D+GL +LT L L+ C +L+
Sbjct: 404 LNLNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLT 463
Query: 335 DTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA 392
D +GL HL+ LT L+ +NL+ + ++D L L L+ L+ L L D + +TD GLA
Sbjct: 464 D-----AGLAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLA 518
Query: 393 ALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 447
LT LT L HL+L G ++TD+G A+L + L+ L++ LTD G+ K L++
Sbjct: 519 HLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLAT 575
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 191/384 (49%), Gaps = 43/384 (11%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ +L F N +T + A NL L LE C I GL +L L+ L+ L++ C
Sbjct: 228 IEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCE 287
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVF 225
+TD + L+ LT L+ L + TD+G+A+L L ++ + CS H
Sbjct: 288 NLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAH-- 345
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN 284
LT L L L+L GC +T A L L+ L L +L+L C+ L+D G + +L+ LN
Sbjct: 346 LTPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLN 405
Query: 285 LGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK------CLELSDT 336
L + +TD L HL LT L+ L+L C I D+GL +LT L L+ C +L+D
Sbjct: 406 LNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTD- 464
Query: 337 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 394
+GL HL+ LT L+ +NL+ + ++D L L L+ L+ L L D + +TD GLA L
Sbjct: 465 ----AGLAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHL 520
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
T LT L HL+L G LTDAG+ H+ L++L L+LS
Sbjct: 521 TPLTALQHLNLSGCY-----------------------KLTDAGLAHLTSLTALQYLDLS 557
Query: 455 QNCNLTDKTLELISGLTGLVSLNV 478
NLTD L+ L ++L +
Sbjct: 558 YCMNLTDDGLDRFKTLATSLNLEI 581
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 166/322 (51%), Gaps = 34/322 (10%)
Query: 230 QKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF 287
+ L +L+LE C +T L L+ L +L +L+L+ C+ L+D G + + +L+ L+L
Sbjct: 251 ENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRG 310
Query: 288 NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
TD L HL LT L+ LNL C D GL +LT L L+ L+L + +GL HL
Sbjct: 311 CYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHL 370
Query: 347 SGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 404
+ LT L+ ++L ++D L L L++L+ LNL+ R +TD GLA LT LT L HLD
Sbjct: 371 TPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHLD 430
Query: 405 LFG--------------------------ARITDSGAAYLRNFKNLRSLEI-CGGGLTDA 437
L ++TD+G A+L L+ L + LTDA
Sbjct: 431 LSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHLNLNWYKNLTDA 490
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKN 496
G+ H+ L+ L L L+ NLTD L ++ LT L LN+S ++T AGL HL L
Sbjct: 491 GLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTA 550
Query: 497 LRSLTLESC-KVTANDIKRLQS 517
L+ L L C +T + + R ++
Sbjct: 551 LQYLDLSYCMNLTDDGLDRFKT 572
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 127/248 (51%), Gaps = 32/248 (12%)
Query: 273 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 325
+F KI ++ L+ N +TD L+ LK NL+ L+L++C I D+GL +L L
Sbjct: 216 EFEKIINHFSNEIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPL 275
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L+ L+LSD + ++D L L L++L+ L+L
Sbjct: 276 VALQHLDLSDCE-----------------------NLTDVGLAHLTPLTALQHLDLRGCY 312
Query: 386 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
TD GLA LT LT L HL+L F + TD+G A+L L+ L++ G LTDAG+ H+
Sbjct: 313 FTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHLTP 372
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 503
L+ L L+L +LTD L + LT L LN++ R +T AGL HL PL L+ L L
Sbjct: 373 LTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHLDLS 432
Query: 504 SCKVTAND 511
C +D
Sbjct: 433 FCSNITDD 440
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ + C +++D GL HL L+ L L +T G+ F
Sbjct: 511 NLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRF 570
Query: 128 AGLINLVKLDLER 140
L + L++ R
Sbjct: 571 KTLATSLNLEIIR 583
>gi|149174696|ref|ZP_01853321.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
gi|148846390|gb|EDL60728.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
Length = 460
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 162/311 (52%), Gaps = 25/311 (8%)
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-E 289
KL L+LE + + +LS L L L+L +++D + + LK L+L FN E
Sbjct: 142 KLWFLSLESTAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKE 201
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK-------------------- 329
I DE + H+KG+ NL+ L + + + DEG+ ++ L NL+
Sbjct: 202 INDEGMPHIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKDK 261
Query: 330 ---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
LEL DT++ G+++L +TN+ES++L + + + + + L++L+L +
Sbjct: 262 NLVSLELDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVV 321
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
TD G+ L+ LT LT+LDL + I D G +++ K L L + G TD G+K I +
Sbjct: 322 TDEGMKYLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFT 381
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
L LNL + +TD L+ + L L LN+S + I+ GL+ L LKNL+ L L +
Sbjct: 382 ELNRLNL-EGTPITDAGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQ 440
Query: 507 VTANDIKRLQS 517
VT + +K+ ++
Sbjct: 441 VTDDGVKQFEA 451
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 177/364 (48%), Gaps = 18/364 (4%)
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL+ L +L GL LE L I W TD + + L L + + + D
Sbjct: 98 LDLKGTNAQDADLKHLAGLPSLERL-ILWGPNFTDVSTEEIGKKNKLWFLSLESTAIGDE 156
Query: 196 GIAYLKGLSISSVIFILCSMIIR--LFCLHVFLTSLQKLTL-----LNLEGCPVTAACLD 248
G+ L L V+ + + I L + F L+ L L +N EG P
Sbjct: 157 GVKNLSDLQGLQVLSLRATNITNDALKVVAAF-PELKDLDLRFNKEINDEGMP------- 208
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+ + +L L + Q++D+G + + + +L+ LN I+DE L LK NL SL
Sbjct: 209 HIKGMKNLKVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSLE 267
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
LD I DEG+ L + N++ L L VG+ G+ ++ + L++++L T ++D ++
Sbjct: 268 LDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMK 327
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
L+GL+ L L+LD I D GL + L LT L L+G TD G + F L L
Sbjct: 328 YLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLN 387
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G +TDAG+K + L L LNLS+ ++D+ L+ ++ L L L +S +++T G+
Sbjct: 388 LEGTPITDAGLKQLLPLKKLEYLNLSK-TEISDEGLKTLAALKNLKELQLSFTQVTDDGV 446
Query: 489 RHLK 492
+ +
Sbjct: 447 KQFE 450
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 175/361 (48%), Gaps = 5/361 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S +L +DL G++ D+ L HL +L+ L + +D E + + L LS
Sbjct: 90 SDDGRVLILDLKGTNAQDADLKHLAGLPSLERLIL-WGPNFTDVSTEEIGKKNKLWFLSL 148
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ AI +G+K + L L L L + L + +L+ L++++ I D M
Sbjct: 149 E-STAIGDEGVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGM 207
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ G+ NLK L++ ++VTD G +K ++ + L + + + L + L
Sbjct: 208 PHIKGMKNLKVLKVQATQVTDEG---MKDIAALPNLQRLNTWGRNISDETLELLKDKNLV 264
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L L+ ++ + L + ++ L+L R + + G E + L+ L+L +TDE
Sbjct: 265 SLELDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDE 324
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ +L GLT+L L+LD IGD+GL + L L L L T+ GL+ +SG T L
Sbjct: 325 GMKYLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELN 384
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+NL T I+D L++L L L+ LNL +I+D GL L +L L L L ++TD
Sbjct: 385 RLNLEGTPITDAGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDD 444
Query: 414 G 414
G
Sbjct: 445 G 445
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 51/212 (24%)
Query: 355 INLSFTGISDGSLRKLAGLSSLKS------------------------LNLDARQITDTG 390
++L T D L+ LAGL SL+ L+L++ I D G
Sbjct: 98 LDLKGTNAQDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSLESTAIGDEG 157
Query: 391 LAALTSLTGLTHLDL-------------------------FGARITDSGAAYLRNFKNLR 425
+ L+ L GL L L F I D G +++ KNL+
Sbjct: 158 VKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLK 217
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L++ +TD G+K I L +L LN + N++D+TLEL+ LVSL + ++ I+
Sbjct: 218 VLKVQATQVTDEGMKDIAALPNLQRLN-TWGRNISDETLELLKD-KNLVSLELDDTEISD 275
Query: 486 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
G+++LK + N+ SL L V I+ +Q+
Sbjct: 276 EGMKYLKDMTNMESLHLRRDFVGNPGIENIQN 307
>gi|46447552|ref|YP_008917.1| hypothetical protein pc1918 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401193|emb|CAF24642.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 552
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 170/286 (59%), Gaps = 10/286 (3%)
Query: 230 QKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 287
+ L +L+LE C +T L L+ L +L +LNLN C +L+D G + +L+ L+L +
Sbjct: 218 ENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVHLKSLTALQTLDLSY 277
Query: 288 -NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 344
+ D LVHLK LT L++L L SC + D GL +L L L+ L+LS + +GL
Sbjct: 278 CKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLDLSYCKNFKDAGLA 337
Query: 345 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 402
HL LT L++++LS+ ++D L L L++L++LNL +++ D GLA L LT L +
Sbjct: 338 HLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQY 397
Query: 403 LDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
L L + +TD G ++L++ L+ L + G LTDAG+ H+K L++L L L + NLT
Sbjct: 398 LALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLT 457
Query: 461 DKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
L ++ LT L +L++S ++ AGL HLKPL L++L L+ C
Sbjct: 458 GDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWC 503
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 183/367 (49%), Gaps = 37/367 (10%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ + +TD+ L+ LK+C NL+ L C I+D GL HL L+ L L+ +T G+
Sbjct: 202 NNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGL 261
Query: 125 KAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL C + GLV+LK L L++L + C +TD + L LT L+
Sbjct: 262 VHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQ 321
Query: 184 SLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
+L +S C D+G+A+L L ++ ++ C + H L SL L LNL C
Sbjct: 322 TLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSH--LKSLTALQTLNLSYCK 379
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHL 298
+ A L L L +L YL LN C+ L+D G + +L+ L L G + +TD L HL
Sbjct: 380 KLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHL 439
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
K LT L++L L C NLTG GL HL+ LT L++++LS
Sbjct: 440 KPLTALQTLGLRRCQ-------NLTG----------------DGLAHLAPLTALQTLDLS 476
Query: 359 F-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGA 415
+ + D L L L++L++L L +TD GLA L L L HLDL + +T +G
Sbjct: 477 YCKKLKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAG- 535
Query: 416 AYLRNFK 422
L NFK
Sbjct: 536 --LANFK 540
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/349 (33%), Positives = 183/349 (52%), Gaps = 16/349 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L ++C L+ L L + D + +A ++L ++L+G +TD+GL+HL
Sbjct: 206 LTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPL-TALQHLNLNGCYKLTDAGLVHL 264
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K + LQ+LD ++C + D GL HL+ L+ L +L+ +T +G+ L L LD
Sbjct: 265 KSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLD 324
Query: 138 LERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L C GL +L L L++L++ +C +TD + L LT L++L +S C K+ D+
Sbjct: 325 LSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDA 384
Query: 196 GIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSAL 253
G+A+LK L ++ + C + H L SL L L L GC +T A L L L
Sbjct: 385 GLAHLKPLTALQYLALNSCKNLTDRGLSH--LKSLMALQHLVLSGCDNLTDAGLAHLKPL 442
Query: 254 GSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 311
+L L L RCQ L+ DG + + +L+ L+L + ++ D L HLK LT L++L L
Sbjct: 443 TALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKW 502
Query: 312 CG-IGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRHLSGLTNLESI 355
C + D GL +L L L+ L+LS T+ G + + L NLE +
Sbjct: 503 CSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAGLANFKILGASLNLEIV 551
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 194/377 (51%), Gaps = 47/377 (12%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L L L+L C
Sbjct: 195 IEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCY 254
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIA 198
++ GLV+LK L L++L++ +C + D+ +KPL+ L NL SC +TD G++
Sbjct: 255 KLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLA--LTSCKNLTDRGLS 312
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLF 257
+LK LT+LQ L+L C A L L L +L
Sbjct: 313 HLKS-----------------------LTALQT---LDLSYCKNFKDAGLAHLPPLTALQ 346
Query: 258 YLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GI 314
L+L+ C+ L+D G + +L+ LNL + ++ D L HLK LT L+ L L+SC +
Sbjct: 347 TLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNL 406
Query: 315 GDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRK 369
D GL +L L L+ L LS + +GL HL LT L+++ L + TG DG L
Sbjct: 407 TDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTG--DG-LAH 463
Query: 370 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSL 427
LA L++L++L+L +++ D GLA L LT L L L + + +TD+G A+L+ L+ L
Sbjct: 464 LAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHL 523
Query: 428 EICG-GGLTDAGVKHIK 443
++ LT AG+ + K
Sbjct: 524 DLSYCNNLTRAGLANFK 540
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 156/274 (56%), Gaps = 9/274 (3%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T A L +L +L L+L CQ ++DDG + + +L+ LNL G ++TD LVHLK
Sbjct: 206 LTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVHLK 265
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 357
LT L++L+L C + D GLV+L L L+ L L+ + + GL HL LT L++++L
Sbjct: 266 SLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLDL 325
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 414
S+ D L L L++L++L+L + +TD GL+ L SLT L L+L + ++ D+G
Sbjct: 326 SYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAG 385
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+L+ L+ L + LTD G+ H+K L +L L LS NLTD L + LT L
Sbjct: 386 LAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTAL 445
Query: 474 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
+L + +T GL HL PL L++L L CK
Sbjct: 446 QTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCK 479
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 183/373 (49%), Gaps = 62/373 (16%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
++E+LN +TD+ + L NLK L + +C +TD G+A+L L
Sbjct: 194 EIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPL----------- 242
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
T+LQ L NL GC +T A L L +L +L L+L+ C+ L D G
Sbjct: 243 ------------TALQHL---NLNGCYKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLV 287
Query: 273 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 330
+ +L+ L L +TD L HLK LT L++L+L C D GL +L L L+
Sbjct: 288 HLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQT 347
Query: 331 LELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 387
L+LS + + GL HL LT L+++NLS+ + D L L L++L+ L L++ + +T
Sbjct: 348 LDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLT 407
Query: 388 DTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSL------EICGGGLT----- 435
D GL+ L SL L HL L G +TD+G A+L+ L++L + G GL
Sbjct: 408 DRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPL 467
Query: 436 ---------------DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
DAG+ H+K L++L L L NLTD L + L L L++S
Sbjct: 468 TALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSY 527
Query: 481 -SRITSAGLRHLK 492
+ +T AGL + K
Sbjct: 528 CNNLTRAGLANFK 540
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/253 (37%), Positives = 141/253 (55%), Gaps = 8/253 (3%)
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 319
N L+D +LKVL+L ITD+ L HL LT L+ LNL+ C + D GL
Sbjct: 202 NNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGL 261
Query: 320 VNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 377
V+L L L+ L+LS + + +GL HL LT L+++ L S ++D L L L++L+
Sbjct: 262 VHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQ 321
Query: 378 SLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGL 434
+L+L + D GLA L LT L LDL + +TD G ++L++ L++L + L
Sbjct: 322 TLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKL 381
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 493
DAG+ H+K L++L L L+ NLTD+ L + L L L +S +T AGL HLKP
Sbjct: 382 KDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKP 441
Query: 494 LKNLRSLTLESCK 506
L L++L L C+
Sbjct: 442 LTALQTLGLRRCQ 454
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 34/245 (13%)
Query: 273 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 325
+F KI ++ LN N +TD L+ LK NL+ L+L++C I D+GL +L L
Sbjct: 183 EFEKIINHFSNEIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPL 242
Query: 326 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 383
L+ L L+ ++ +GL HL LT L++++LS+ + D L L L++L++L L +
Sbjct: 243 TALQHLNLNGCYKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTS 302
Query: 384 -RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
+ +TD GL+ L SLT L LDL +Y +NFK DAG+ H+
Sbjct: 303 CKNLTDRGLSHLKSLTALQTLDL----------SYCKNFK-------------DAGLAHL 339
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 501
L++L L+LS +LTD+ L + LT L +LN+S ++ AGL HLKPL L+ L
Sbjct: 340 PPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLA 399
Query: 502 LESCK 506
L SCK
Sbjct: 400 LNSCK 404
>gi|46447562|ref|YP_008927.1| hypothetical protein pc1928 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401203|emb|CAF24652.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 180/331 (54%), Gaps = 18/331 (5%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ L+F N +T NL L E C + GL +LK L L+ LN+ C
Sbjct: 196 IKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCY 255
Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFIL-CSMIIRLFCLHV 224
+TD + L+ LT L+ L +S C TD G+A+L L+ + ++ C +I H+
Sbjct: 256 HLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHL 315
Query: 225 -FLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLK 281
LTSLQ L NL GC +T A L L+ L L +LNL++C+ L+D G + +L+
Sbjct: 316 KPLTSLQHL---NLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQ 372
Query: 282 VLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-V 338
LNL ++TD+ L HL +TNL+ L+L C + D GL +LT L +L+ L+LS + +
Sbjct: 373 YLNLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENL 432
Query: 339 GSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 396
GL HL+ LT L+ ++LS+ ++D L L L++L+ L+L + +TD GLA LT
Sbjct: 433 TDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTP 492
Query: 397 LTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 426
L L +LDL G + TD G A FKNL +
Sbjct: 493 LIALQYLDLIGCKNFTDDGLA---RFKNLAA 520
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 128/365 (35%), Positives = 185/365 (50%), Gaps = 58/365 (15%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
+++ LN +TD+ L NLK+L +C +TD+G+A+LK L
Sbjct: 195 EIKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPL----------- 243
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 272
T+LQ L NL GC +T L L+ L L +L+L++C +DDG
Sbjct: 244 ------------TALQHL---NLSGCYHLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLA 288
Query: 273 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ + +L+ L L G + D L HLK LT+L+ LNL CG
Sbjct: 289 HLTSLTALQYLALMGCKNLIDAGLAHLKPLTSLQHLNLRGCGY----------------- 331
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDT 389
L+D +GL HL+ LT L+ +NLS ++D L L L +L+ LNLD R++TD
Sbjct: 332 -LTD-----AGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDD 385
Query: 390 GLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 447
GLA LT +T L HLDL +TD G A+L K+L+ L++ LTD G+ H+ L++
Sbjct: 386 GLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLTPLTA 445
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 506
L L+LS NLTD L ++ LT L L++ + +T GL HL PL L+ L L CK
Sbjct: 446 LQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCK 505
Query: 507 VTAND 511
+D
Sbjct: 506 NFTDD 510
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 141/297 (47%), Gaps = 59/297 (19%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD GL HL + LQ L C + D GL HL+ L++L L+ R +T G+ A
Sbjct: 282 FTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHLA 341
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L+L +C + GL +L+ L+ L+ LN+ C +TD + L+ +TNL+ L +
Sbjct: 342 PLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDL 401
Query: 188 S-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
S C +TD G+A+L
Sbjct: 402 SQCWHLTDIGLAHL---------------------------------------------- 415
Query: 247 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 304
+ L SL +L+L+RC+ L+DDG + + +L+ L+L + +TD+ L HL LT L
Sbjct: 416 ----TPLKSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTL 471
Query: 305 ESLNLDSC-GIGDEGLVNLTGLCNLKCLEL----SDTQVGSSGLRHLSGLTNLESIN 356
+ L+L C + D+GL +LT L L+ L+L + T G + ++L+ NL IN
Sbjct: 472 QHLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAASLNLTIIN 528
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 113/217 (52%), Gaps = 7/217 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++ D+GL HLK ++LQ L+ C ++D GL HL L+ L L+ + +T G+
Sbjct: 306 NLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHL 365
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L+L+ C ++ GL +L + L+ L++ C +TD + L+ L +L+ L
Sbjct: 366 RLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLD 425
Query: 187 IS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VT 243
+S C +TD G+ +L L ++ + C + H LT L L L+L GC +T
Sbjct: 426 LSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAH--LTPLTTLQHLDLMGCKNLT 483
Query: 244 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 279
L L+ L +L YL+L C+ +DDG +F + +
Sbjct: 484 DDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAA 520
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLS ++TD GL+HL + LQ LD ++C ++D GL HL L+ L L
Sbjct: 420 SLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGC 479
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+T G+ LI L LDL C GL K L SLN+ N
Sbjct: 480 KNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAA--SLNLTIIN 528
>gi|87311782|ref|ZP_01093896.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
gi|87285456|gb|EAQ77376.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
Length = 427
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 183/382 (47%), Gaps = 53/382 (13%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
+D ++PLS L ++K L++ + VTD I L
Sbjct: 70 SFSDEQLEPLSKLKHVKILKVYGADVTDKTIDN--------------------------L 103
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
++ L + ++ A ++ LSAL L L L R +S+ E ++ L+ L+L
Sbjct: 104 LQMKDLRDFSAANTTISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLR 163
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
+++ITD + + + N+E L L+ +GDEGL +LTGL LK L + T V +G + +
Sbjct: 164 YDDITDAGMEIVAKMPNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSI 223
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+ LTNLE++ + T ++ + LA L+ +K+L L Q+ D G L + L +L L
Sbjct: 224 ANLTNLETLETNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLR 283
Query: 407 GARIT------------------------DSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
R+ D G ++ FKNL L + +T G+ HI
Sbjct: 284 QTRVAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHI 343
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLT 501
KDL+++ L L +TD +LE + G+ L +L++ N IT+ +++LK LK L+ ++
Sbjct: 344 KDLTNMKTLILDYQ-GITDDSLENLVGMQKLQTLSLKDNDMITNESIKYLKQLKGLKKIS 402
Query: 502 LESCKVTANDIKRLQSRDLPNL 523
+ ++ + + L+ ++LP L
Sbjct: 403 ITFTQIDSRGVAELK-KELPGL 423
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 166/322 (51%), Gaps = 30/322 (9%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNA------ 118
G+DVTD + +L +L+ DF+ ISD G+E L L +L+ L RR N
Sbjct: 92 GADVTDKTIDNLLQMKDLR--DFSAANTTISDAGIEKLSALKDLSVLQLRRTNISNKSLE 149
Query: 119 -----------------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
IT GM+ A + N+ L LE GL +L GL KL+ LN
Sbjct: 150 SMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDEGLAHLTGLSKLKFLN 209
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
++ N +TD+ K ++ LTNL++L+ + + +T G+ YL L+ + ++ + +
Sbjct: 210 VRGTN-VTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGF 268
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+H L +++L L L V A +++L + +L L+++ DDG K +L+
Sbjct: 269 VH--LKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLE 326
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGS 340
LNL F ++T + L H+K LTN+++L LD GI D+ L NL G+ L+ L L D + +
Sbjct: 327 KLNLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITN 386
Query: 341 SGLRHLSGLTNLESINLSFTGI 362
+++L L L+ I+++FT I
Sbjct: 387 ESIKYLKQLKGLKKISITFTQI 408
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 139/294 (47%), Gaps = 27/294 (9%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
G + +++ SD+ E SK+ +K+L + ++TD+ + +L + +L + +
Sbjct: 59 GVVTVADMSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTT 118
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
I D G+ L+ L +L L+L T + + L + L L ++L + I+D + +A +
Sbjct: 119 ISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKM 178
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
+++ L L+ + D GLA LT L+ L L++ G +TD+G + N NL +LE G
Sbjct: 179 PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTA 238
Query: 434 LT------------------------DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
LT D G H+K++ L L L Q + +E + G
Sbjct: 239 LTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQ-TRVAGAGMENLIG 297
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
+ L SL+VS + GL H+ KNL L L KVT + + + +DL N+
Sbjct: 298 IDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHI--KDLTNM 349
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 55/309 (17%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
+Y + D M+++A ++ + L G+ V D GL HL S L+ L+ ++D G
Sbjct: 163 RYDDITDAGMEIVAKM-PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVR-GTNVTDAGF 220
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ + L+NL +L A+T +GM+ A L + L+L R G V+LK + +L++
Sbjct: 221 KSIANLTNLETLE-TNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQN 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
L ++ + + M+ L G+ LKSL +S + D G+
Sbjct: 280 LMLRQTR-VAGAGMENLIGIDTLKSLDVSETPFGDDGL---------------------- 316
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
+HV +L LNL +++ DG + +
Sbjct: 317 --IHV--------------------------GKFKNLEKLNLWFTKVTPDGLPHIKDLTN 348
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+K L L + ITD+ L +L G+ L++L+L D+ I +E + L L LK + ++ TQ+
Sbjct: 349 MKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNESIKYLKQLKGLKKISITFTQI 408
Query: 339 GSSGLRHLS 347
S G+ L
Sbjct: 409 DSRGVAELK 417
>gi|46447199|ref|YP_008564.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400840|emb|CAF24289.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1143
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 204/391 (52%), Gaps = 38/391 (9%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L L + D + + S +L +DL G +TDSGL HL
Sbjct: 767 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL-SPLVALQHLDLGGCYKITDSGLAHL 825
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD C +I+D GL +L L L L+ R +T G+ + L+ L LD
Sbjct: 826 SRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLD 885
Query: 138 LERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+RC +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L + C+K+TDS
Sbjct: 886 LDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDS 945
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALG 254
G+A+L S+++ L LNL C +T L LS L
Sbjct: 946 GLAHL-------------SLLV-------------NLQYLNLNRCNNLTDRGLAHLSHLV 979
Query: 255 SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC 312
+L +L+L C +++D G S + +L+ LNL + +TD L HL L L+ LNL+ C
Sbjct: 980 ALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCC 1039
Query: 313 G-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRK 369
+ D+GL L+ L L+ L L S + S+GL HL+ L L+ +NLS+ ++D L
Sbjct: 1040 VCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTH 1099
Query: 370 LAGLSSLKSLNL-DARQITDTGLAALTSLTG 399
L L+SLK L+L + T +GLA +L
Sbjct: 1100 LTRLASLKHLDLSECPYFTISGLAHFKALAA 1130
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 145/411 (35%), Positives = 203/411 (49%), Gaps = 47/411 (11%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
+GG+E SL F N +T + A NL L L C GL +L L
Sbjct: 753 EGGIE---------SLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPL 803
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILC 213
+ L+ L++ C ITDS + LS L L+ L + C ++TDSG+ YL L
Sbjct: 804 VALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRL---------- 853
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGC 271
+LQ L NL C +T L LS L +L YL+L+RC +++D G
Sbjct: 854 -------------VALQHL---NLNRCVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGL 897
Query: 272 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 329
S + +L+ LNLG N +TD L HL LT+L+ L+L C + D GL +L+ L NL+
Sbjct: 898 AHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQ 957
Query: 330 CLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD-ARQI 386
L L+ + GL HLS L L+ ++L I+D L L+ L +L+ LNL+ +
Sbjct: 958 YLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNL 1017
Query: 387 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 444
TD GLA L+ L L HL+L +TD G AYL LR L + LT AG+ H+
Sbjct: 1018 TDRGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTP 1077
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPL 494
L +L LNLS +L D L ++ L L L++S T +GL H K L
Sbjct: 1078 LIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGLAHFKAL 1128
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 182/346 (52%), Gaps = 36/346 (10%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ LD C +I+D GL +L L L L+ +T G+
Sbjct: 226 NFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYL 285
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L+ L LDL C +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L
Sbjct: 286 SHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 345
Query: 187 I-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA 244
+ C+K+TDSG+A+L S+++ L LNL C +T
Sbjct: 346 LRDCAKLTDSGLAHL-------------SLLV-------------NLQYLNLNRCYNLTD 379
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 302
L LS L +L YL+L C +L+ G S + +L+ L+L EITD L HL L
Sbjct: 380 RGLSHLSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLV 439
Query: 303 NLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSF- 359
L+ LNL+ C + D+GL L+ L L+ L L + S+GL HL+ L L+ +NLS+
Sbjct: 440 ALQHLNLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYC 499
Query: 360 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL-TGLTHL 403
++D L L L+SLK L+L + TD+GLA T+L T LTH
Sbjct: 500 DSLNDNGLTHLTRLASLKHLDLSECPYFTDSGLAHFTALATSLTHF 545
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 184/370 (49%), Gaps = 60/370 (16%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS 204
L+ LK L+ L + C TD+ + LS L L+ L + C K+TDSG+A+L L
Sbjct: 770 AHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLSRL- 828
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNR 263
+LQ L +L GC +T + L LS L +L +LNLNR
Sbjct: 829 ----------------------VALQHL---DLGGCYEITDSGLTYLSRLVALQHLNLNR 863
Query: 264 CQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLV 320
C L+DDG S + +L+ L+L +ITD L HL L L+ LNL C + D GL
Sbjct: 864 CVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLA 923
Query: 321 NLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+L+ L +LK L+L D ++ SGL HLS L NL+ +NL+
Sbjct: 924 HLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLN--------------------- 962
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI--CGGGLTD 436
+TD GLA L+ L L HLDL +ITDSG A+L NL+ L + C LTD
Sbjct: 963 --RCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDN-LTD 1019
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLK 495
G+ H+ L +L LNL+ LTD L +S L L LN+ S +TSAGL HL PL
Sbjct: 1020 RGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLI 1079
Query: 496 NLRSLTLESC 505
L+ L L C
Sbjct: 1080 ALQYLNLSYC 1089
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 181/360 (50%), Gaps = 37/360 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS 204
L+ LK L+ L + C TD+ + LS L L+ L + C K+TDSG+ YL L
Sbjct: 205 AHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRL- 263
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 263
+LQ L NL C +T L LS L +L +L+L
Sbjct: 264 ----------------------VALQHL---NLNCCVCLTDDGLAYLSHLVALQHLDLGE 298
Query: 264 C-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLV 320
C +++D G S + +L+ LNLG N +TD L HL LT+L+ L+L C + D GL
Sbjct: 299 CYKITDSGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLA 358
Query: 321 NLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKS 378
+L+ L NL+ L L+ + GL HLS L L+ ++L ++ L L+ L +L+
Sbjct: 359 HLSLLVNLQYLNLNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQY 418
Query: 379 LNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLT 435
L+LD +ITD GLA L+ L L HL+L A +TD G AYL LR L + C G LT
Sbjct: 419 LDLDRCGEITDRGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLT 478
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPL 494
AG+ H+ L +L LNLS +L D L ++ L L L++S T +GL H L
Sbjct: 479 SAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTDSGLAHFTAL 538
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 181/358 (50%), Gaps = 58/358 (16%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSM 215
+ESL+ +TD+ + L NLK L++ C TD+G+A+L L
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRL------------ 238
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 273
+LQ L +L GC +T + L LS L +L +LNLN C L+DDG
Sbjct: 239 -----------VALQHL---DLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAY 284
Query: 274 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCL 331
S + +L+ L+LG +ITD L HL L L+ LNL C + D GL +L+ L +LK L
Sbjct: 285 LSHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHL 344
Query: 332 ELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITD 388
+L D ++ SGL HLS L NL+ +NL+ ++D L L+ L +L+ L+L +++T
Sbjct: 345 DLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTS 404
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+GLA L+ L L +LDL + CG +TD G+ H+ L +L
Sbjct: 405 SGLAHLSPLVALQYLDL----------------------DRCGE-ITDRGLAHLSRLVAL 441
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
LNL+ LTD L +S L L LN+ +TSAGL HL PL L+ L L C
Sbjct: 442 QHLNLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYC 499
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 127/248 (51%), Gaps = 33/248 (13%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R N +T +G+
Sbjct: 915 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAH 974
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C +I GL +L L+ L+ LN+ C+ +TD + LS L L+ L
Sbjct: 975 LSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHL 1034
Query: 186 QISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VT 243
++C +TD G+AY L+ L L LNL C +T
Sbjct: 1035 NLNCCVCLTDDGLAY--------------------------LSPLVALRHLNLRSCDNLT 1068
Query: 244 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 301
+A L L+ L +L YLNL+ C L+D+G +++ SLK L+L T L H K L
Sbjct: 1069 SAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGLAHFKAL 1128
Query: 302 TNLESLNL 309
SLNL
Sbjct: 1129 A--ASLNL 1134
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 121/241 (50%), Gaps = 31/241 (12%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R +T +G+
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C ++ GL +L L+ L+ L++ C ITD + LS L L+ L
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444
Query: 186 QISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVT 243
++C +TD G+AY L+ L L LNL C +T
Sbjct: 445 NLNCCACLTDDGLAY--------------------------LSPLVALRHLNLRCCGNLT 478
Query: 244 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGL 301
+A L L+ L +L YLNL+ C L+D+G +++ SLK L+L TD L H L
Sbjct: 479 SAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTDSGLAHFTAL 538
Query: 302 T 302
Sbjct: 539 A 539
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 127/234 (54%), Gaps = 8/234 (3%)
Query: 290 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 347
+TD L+ LK NL+ L L C D GL +L+ L L+ L+L ++ SGL HLS
Sbjct: 767 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLS 826
Query: 348 GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 405
L L+ ++L I+D L L+ L +L+ LNL+ +TD GLA L+ L L +LDL
Sbjct: 827 RLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDL 886
Query: 406 FGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+ITD G A+L + L+ L + C LTD+G+ H+ L+SL L+L LTD
Sbjct: 887 DRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSG 946
Query: 464 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 515
L +S L L LN++ + +T GL HL L L+ L L C K+T + + L
Sbjct: 947 LAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHL 1000
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 7/210 (3%)
Query: 304 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 360
+ESL+ ++ + D L+ L NLK L L + + +GL HLS L L+ ++L
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250
Query: 361 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 418
I+D L L+ L +L+ LNL+ +TD GLA L+ L L HLDL +ITDSG A+L
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310
Query: 419 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
+ L+ L + C LTD+G+ H+ L+SL L+L LTD L +S L L LN
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370
Query: 478 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
++ +T GL HL L L+ L L CK
Sbjct: 371 LNRCYNLTDRGLSHLSHLVALQYLDLGLCK 400
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++T +GL HL LQ L+ ++C ++D GL HL L++L L T G+
Sbjct: 1063 SCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGL 1122
Query: 125 KAFAGLINLVKLDLER 140
F L + L + R
Sbjct: 1123 AHFKALAASLNLKIIR 1138
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 418 LRNFKNLRSLEICGG----------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
F NL S EI GG LTDA + +KD +L +L L + N TD L +
Sbjct: 176 FEEFLNLFSNEIEGGIESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL 235
Query: 468 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
S L L L++ +IT +GL +L L L+ L L C +D
Sbjct: 236 SRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDD 280
>gi|301118238|ref|XP_002906847.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108196|gb|EEY66248.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 168/535 (31%), Positives = 255/535 (47%), Gaps = 93/535 (17%)
Query: 55 QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN-LTSL 111
Q L V+L+G S +TD + L + S L S+ C Q++D ++ L SN LTS+
Sbjct: 138 QFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSV 197
Query: 112 SFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--C 167
+ ++ +G+ A A L L L+L C+++ G+ L L L++LN+ +CN
Sbjct: 198 NLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGA 257
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA------YLKGLSISSVI------FILCS 214
+TD + L+ +T+L SL +S CS++TD GI+ L+ L I++V F+ +
Sbjct: 258 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 317
Query: 215 MIIRLFCLHV------------FLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNL 261
++ L L V L + KL NL C + A + +L + +LN
Sbjct: 318 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 377
Query: 262 NRC-QLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDE 317
+C +++D G +K+ +L L++ FN +TDE L L L L+SL L C GI DE
Sbjct: 378 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFN-VTDEGLNELSKLNRLKSLYLGGCSGIRDE 436
Query: 318 GLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSS 375
G+ L+ L +L L+LS+ QVG+ L + L NL ++NL I D + LAGL+
Sbjct: 437 GIAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRCNRIDDDGIAHLAGLTR 496
Query: 376 LKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
LK+LNL + R +TD + +TGL L L+ L
Sbjct: 497 LKTLNLANCRLLTDRATKTVAQMTGLESLVLWYC-----------------------NKL 533
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-------------------------ISG 469
TDAG+ ++ L+ L ++L+ LTD +LE +S
Sbjct: 534 TDAGILNLSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSK 593
Query: 470 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL--QSRDL 520
+T L SLN+S IT GL HLK L NL S+ L C KVT I L QS D
Sbjct: 594 VTSLTSLNLSECGEITDTGLEHLKTLVNLSSVNLWYCTKVTPVGINFLPVQSVDF 648
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 30/213 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFC 91
L+ L LG G+ D+ + + S SSL+ +DLS V + L+ + NL +L+ C
Sbjct: 422 LKSLYLGGCSGIRDEGIAAL-SHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRC 480
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+I D G+ HL GL+ L +L+ +T + K A + L L L C ++ G++N
Sbjct: 481 NRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDAGILN 540
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP-------------------------LSGLTNLKSL 185
L L KL+S+++ C+ +TD+ ++ LS +T+L SL
Sbjct: 541 LSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSL 600
Query: 186 QIS-CSKVTDSGIAYLKGL-SISSVIFILCSMI 216
+S C ++TD+G+ +LK L ++SSV C+ +
Sbjct: 601 NLSECGEITDTGLEHLKTLVNLSSVNLWYCTKV 633
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ SLEAF + L L LG ++D+ M + S+ +SL S++LS ++TD+GL HL
Sbjct: 558 LTDASLEAFLNMPNLTSLDLGNCCLLSDEGM-LTLSKVTSLTSLNLSECGEITDTGLEHL 616
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL 102
K NL S++ +C +++ G+ L
Sbjct: 617 KTLVNLSSVNLWYCTKVTPVGINFL 641
>gi|290998894|ref|XP_002682015.1| predicted protein [Naegleria gruberi]
gi|284095641|gb|EFC49271.1| predicted protein [Naegleria gruberi]
Length = 413
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 148/276 (53%), Gaps = 1/276 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT L++ + + +S + L LN++ ++SD+G + S++ L L
Sbjct: 128 FISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEISDEGAKYISEMKQLTSLY 187
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ NEI DE H+ + L SLN+ I DEG +++ + L L + ++G G +
Sbjct: 188 IHNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQLISLSIGYNRIGDEGFK 247
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++S + L S++++ I D + ++ + L SLN+ +I D G ++ L LT LD
Sbjct: 248 YISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFNEIGDEGAKYISELKQLTSLD 307
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ I+D GA Y+ K L L I ++D G K+I +L LT L+++ N + ++
Sbjct: 308 ISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSLDITDN-KIGNEGA 366
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ IS + L+SLN+ +RI G +++ +K L SL
Sbjct: 367 KYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSL 402
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 136/263 (51%), Gaps = 3/263 (1%)
Query: 246 CLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
C+ S + S+ L ++R L S D + S++ L L++ N I E + ++ + L
Sbjct: 101 CMKS-QFMNSIVNLKVSRWLLDSVDQLKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQL 159
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
SLN+ I DEG ++ + L L + + ++G G +H+S + L S+N+ ISD
Sbjct: 160 TSLNISEIEISDEGAKYISEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIGCNEISD 219
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
+ ++ ++ L SL++ +I D G ++ + LT LD+ I D GA Y+ K L
Sbjct: 220 EGAKHISEMNQLISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQL 279
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
SL I + D G K+I +L LT L++S+ ++D+ + IS + L+ L + + I+
Sbjct: 280 TSLNIGFNEIGDEGAKYISELKQLTSLDISE-TEISDEGAKYISEMKQLIWLTIGYNEIS 338
Query: 485 SAGLRHLKPLKNLRSLTLESCKV 507
G +++ LK L SL + K+
Sbjct: 339 DKGAKYISELKQLTSLDITDNKI 361
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 117/261 (44%), Gaps = 29/261 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ + +++ D G H+ + L SL+ C +ISD G +H+ ++ L SLS
Sbjct: 178 SEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIG-CNEISDEGAKHISEMNQLISLSI 236
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 237 GYN-RIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGF-NEIGDEGA 294
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S L L SL IS ++++D G Y+ + +++L
Sbjct: 295 KYISELKQLTSLDISETEISDEGAKYI--------------------------SEMKQLI 328
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L + ++ +S L L L++ ++ ++G + S++ L LN+G+N I DE
Sbjct: 329 WLTIGYNEISDKGAKYISELKQLTSLDITDNKIGNEGAKYISEMNQLISLNIGYNRIGDE 388
Query: 294 CLVHLKGLTNLESLNLDSCGI 314
++ + L SL S G
Sbjct: 389 GAKYISEMKQLTSLRQISLGF 409
>gi|46447129|ref|YP_008494.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400770|emb|CAF24219.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 559
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 180/359 (50%), Gaps = 58/359 (16%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLSISSVIFILCS 214
++E+LN +TD+ L NLK L +SC +TD +A+L
Sbjct: 226 EIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTP------------ 273
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
LT+LQ L NL C +T L L+ L +L +L+L+ C+ L+D G
Sbjct: 274 -----------LTALQHL---NLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLA 319
Query: 273 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ + +L+ LNL GF ++TD LVHL LT L+ L+L C NLT
Sbjct: 320 HLTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCK-------NLT-------- 364
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDT 389
+GL HL+ LT L+ +NLS + ++D L +L L++L+ L+L D +T
Sbjct: 365 --------DAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSA 416
Query: 390 GLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 447
GL LTSLT L HL L + +TD+G +L L+ L + G LTDAG+ H+ L++
Sbjct: 417 GLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTA 476
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
L LNL NLTD L ++ LT L LN+S +T AGL HL L L+ L L C
Sbjct: 477 LQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYC 535
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 186/370 (50%), Gaps = 60/370 (16%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ A +DC L+ L L + D + + + ++L ++LS +TD+GL+HL
Sbjct: 238 LTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHL-TPLTALQHLNLSKCRKLTDTGLVHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L L L+ R F L +
Sbjct: 297 TPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLR-----------GFGKLTD----- 340
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
GLV+L L L+ L++ WC +TD+ + L+ LT L+ L +S +TD+G
Sbjct: 341 --------AGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAG 392
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
+A L +FLT+LQ L L + E +T+A L+ L++L +L
Sbjct: 393 LARL-----------------------IFLTALQHLDLSDCEN--LTSAGLERLTSLTAL 427
Query: 257 FYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-G 313
+L L+ C L+D G + + +L+ LNL G +TD LVHL LT L+ LNL C
Sbjct: 428 QHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCEN 487
Query: 314 IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 371
+ D GL LT L L+ L LS + +GL HL+ LT L+ +NLS+ ++D L +
Sbjct: 488 LTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFK 547
Query: 372 GLSSLKSLNL 381
L++ SLNL
Sbjct: 548 ALAA--SLNL 555
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 9/182 (4%)
Query: 345 HLSGLT---NLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 399
H S L NL+ ++L S I+D L L L++L+ LNL R++TDTGL LT LT
Sbjct: 242 HFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLTA 301
Query: 400 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 457
L HLDL + +TD+G A+L K L+ L + G G LTDAG+ H+ L++L L+LS
Sbjct: 302 LQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCK 361
Query: 458 NLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRL 515
NLTD L ++ LTGL LN+S +T AGL L L L+ L L C+ +T+ ++RL
Sbjct: 362 NLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERL 421
Query: 516 QS 517
S
Sbjct: 422 TS 423
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++L G ++TD+GL +L + LQ L+ + C +++ GL HL L+ L L+
Sbjct: 475 TALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSY 534
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G++ F L + L + R
Sbjct: 535 CDNLTDAGLERFKALAASLNLKIIR 559
>gi|442319589|ref|YP_007359610.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
gi|441487231|gb|AGC43926.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
Length = 600
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 129/474 (27%), Positives = 214/474 (45%), Gaps = 57/474 (12%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
GV + + +G+SL+++ SGS + D+ L L+D + ++L + +++D GL HL
Sbjct: 103 GVPEPTLLAALVRGTSLVTLRASGSSLGDAHLGALRDFTAWEALHLD-GTRVTDAGLPHL 161
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
GL L+ + AI+ + GL L+GL L + +
Sbjct: 162 SGLRRLSVVRLE-ETAISDK------------------------GLAFLEGLTTLRRVGL 196
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
++ ++ LS L+ L +S + D +A++ G + ++I
Sbjct: 197 A-GTSVSAQGLRFLSAQAELEWLDLSDTSTDDRVLAWVSGAHLHTLI------------- 242
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
L G VT A L L + L +L L R L+D G + +L+
Sbjct: 243 --------------LSGTQVTDAGLARLRDMPHLTWLGLARTGLTDGGLAPIGALRALEA 288
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+LG ++TD L+HL +LE+L L + GL +L GL L+ L L DT++ +
Sbjct: 289 LHLGETQVTDAGLLHLAESKSLEALVLTKTRLHGPGLQHLAGLTRLELLHLDDTRLDDAA 348
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+RHL GL L + LS T I+ L L LS+L+ L + +T LA L LT
Sbjct: 349 MRHLRGLVALRELELSRTLITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTR 408
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
LDL + A++ + LR L++ D + ++ LS L L ++ LTD
Sbjct: 409 LDLSHTPVGPEALAHVPS--GLRELDLSRTAFNDEWLPSLRRLSRLQSLR-AERTLLTDL 465
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
L + LT L +L++S + + +GL HL+ L +L L L + + A+ LQ
Sbjct: 466 GLGQLGELTELAALHLSGTLVNGSGLAHLQRLPHLAHLDLGATWLEAHYTPALQ 519
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 179/384 (46%), Gaps = 30/384 (7%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
+ + D+ + L T ++L + ++VTD+G+ +L GL SV+ + + I F
Sbjct: 127 SSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSVVRLEETAISDKGL--AF 184
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR---------------------- 263
L L L + L G V+A L LSA L +L+L+
Sbjct: 185 LEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDLSDTSTDDRVLAWVSGAHLHTLILS 244
Query: 264 -CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
Q++D G + + L L L +TD L + L LE+L+L + D GL++L
Sbjct: 245 GTQVTDAGLARLRDMPHLTWLGLARTGLTDGGLAPIGALRALEALHLGETQVTDAGLLHL 304
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
+L+ L L+ T++ GL+HL+GLT LE ++L T + D ++R L GL +L+ L L
Sbjct: 305 AESKSLEALVLTKTRLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGLVALRELELS 364
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
IT GLA+L +L+ L L + G +T A L+ + L L++ + + H+
Sbjct: 365 RTLITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPVGPEALAHV 424
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
S L L+LS+ D+ L + L+ L SL + +T GL L L L +L L
Sbjct: 425 P--SGLRELDLSRTA-FNDEWLPSLRRLSRLQSLRAERTLLTDLGLGQLGELTELAALHL 481
Query: 503 ESCKVTANDIKRLQSRDLPNLVSF 526
V + + LQ LP+L
Sbjct: 482 SGTLVNGSGLAHLQR--LPHLAHL 503
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 181/384 (47%), Gaps = 37/384 (9%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L ++ LSG+ VTD+GL L+D +L L ++DGGL + L L +L
Sbjct: 235 GAHLHTLILSGTQVTDAGLARLRDMPHLTWLGLART-GLTDGGLAPIGALRALEALHLGE 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A +L L L + TR+HG GL +L GL +LE L++ + D+ M+
Sbjct: 294 TQ-VTDAGLLHLAESKSLEALVLTK-TRLHGPGLQHLAGLTRLELLHLD-DTRLDDAAMR 350
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L GL L+ L++S + +T +G+A L LS L
Sbjct: 351 HLRGLVALRELELSRTLITGAGLASLDALS--------------------------ALER 384
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITDE 293
L + G VTA L L L L+L+ + G E + + S L+ L+L DE
Sbjct: 385 LGVSGLAVTADALAVLQKTERLTRLDLSHTPV---GPEALAHVPSGLRELDLSRTAFNDE 441
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L+ L+ L+SL + + D GL L L L L LS T V SGL HL L +L
Sbjct: 442 WLPSLRRLSRLQSLRAERTLLTDLGLGQLGELTELAALHLSGTLVNGSGLAHLQRLPHLA 501
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
++L T + L GL+ L L+L ++ D L L GL L L +TD+
Sbjct: 502 HLDLGATWLEAHYTPALQGLTRLTWLSLARGRLGDAALGHLPP--GLHTLYLTRTGVTDA 559
Query: 414 GAAYLRNFKNLRSLEICGGGLTDA 437
G LR+ +LR L++ G +TDA
Sbjct: 560 GLDSLRSLPHLRQLDLRGTAVTDA 583
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 132/263 (50%), Gaps = 2/263 (0%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
SL L + L D + + L+L +TD L HL GL L + L+ I
Sbjct: 118 SLVTLRASGSSLGDAHLGALRDFTAWEALHLDGTRVTDAGLPHLSGLRRLSVVRLEETAI 177
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
D+GL L GL L+ + L+ T V + GLR LS LE ++LS T D L ++G +
Sbjct: 178 SDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQAELEWLDLSDTSTDDRVLAWVSG-A 236
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L +L L Q+TD GLA L + LT L L +TD G A + + L +L + +
Sbjct: 237 HLHTLILSGTQVTDAGLARLRDMPHLTWLGLARTGLTDGGLAPIGALRALEALHLGETQV 296
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
TDAG+ H+ + SL L L++ L L+ ++GLT L L++ ++R+ A +RHL+ L
Sbjct: 297 TDAGLLHLAESKSLEALVLTKT-RLHGPGLQHLAGLTRLELLHLDDTRLDDAAMRHLRGL 355
Query: 495 KNLRSLTLESCKVTANDIKRLQS 517
LR L L +T + L +
Sbjct: 356 VALRELELSRTLITGAGLASLDA 378
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 124/470 (26%), Positives = 201/470 (42%), Gaps = 55/470 (11%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++ L G+ VTD+GL HL L + ISD GL L GL+ L + +++
Sbjct: 145 ALHLDGTRVTDAGLPHLSGLRRLSVVRLEET-AISDKGLAFLEGLTTLRRVGLA-GTSVS 202
Query: 121 AQGMKAFAGLINLVKLDLERCT------------RIH-----GGLVNLKGLMKLESL-NI 162
AQG++ + L LDL + +H G V GL +L + ++
Sbjct: 203 AQGLRFLSAQAELEWLDLSDTSTDDRVLAWVSGAHLHTLILSGTQVTDAGLARLRDMPHL 262
Query: 163 KWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
W +TD + P+ L L++L + ++VTD+G+ +L S S +L +
Sbjct: 263 TWLGLARTGLTDGGLAPIGALRALEALHLGETQVTDAGLLHLAE-SKSLEALVLTKTRLH 321
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
L L L +L LL+L+ + A + L L +L L L+R ++ G +
Sbjct: 322 GPGLQ-HLAGLTRLELLHLDDTRLDDAAMRHLRGLVALRELELSRTLITGAGLASLDALS 380
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L+ L + +T + L L+ L L+L +G E L ++ L+ L+LS T
Sbjct: 381 ALERLGVSGLAVTADALAVLQKTERLTRLDLSHTPVGPEALAHVP--SGLRELDLSRTAF 438
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
L L L+ L+S+ T ++D L +L L+ L +L+L + +GLA L L
Sbjct: 439 NDEWLPSLRRLSRLQSLRAERTLLTDLGLGQLGELTELAALHLSGTLVNGSGLAHLQRLP 498
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L HLDL + L+ L L + G L DA + H+
Sbjct: 499 HLAHLDLGATWLEAHYTPALQGLTRLTWLSLARGRLGDAALGHLPP-------------- 544
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
GL +L ++ + +T AGL L+ L +LR L L VT
Sbjct: 545 -------------GLHTLYLTRTGVTDAGLDSLRSLPHLRQLDLRGTAVT 581
>gi|168705463|ref|ZP_02737740.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 362
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 29/327 (8%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
+TD+D+K L+ LT L L +S + VTD+G+ +L
Sbjct: 53 KTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHL------------------------- 87
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L KLT LNL G +T A L+ L L LNL+ Q++D G ++ +++ +L L+L
Sbjct: 88 -APLTKLTALNLGGTKITDAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDL 146
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+T+ L HL LT + SL+L I D GL + + ++ L+LS T + GL+
Sbjct: 147 SHTGVTNAGLGHLT-LTKMRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKD 204
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L + ++LS T ++ L++LA +LK L+L ++ D GL L L L L L
Sbjct: 205 LGLFEEITGLDLSDTKVTSNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYL 264
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G +T +G L + LR LE+ G +T G+KH+ L L +L LS + +TD+ L+
Sbjct: 265 NGTGVTGTGVKELAPLERLRILELTGTMVTGGGLKHLSTLPRLAILRLS-DAAVTDEGLK 323
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLK 492
I+ L L++L++ +++T AG+ L+
Sbjct: 324 DIAHLKTLLALDLYRTKVTGAGVAELR 350
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 155/315 (49%), Gaps = 28/315 (8%)
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
+T + L G VT A L +L+ L L L+L+ ++D G + + + L LNLG +IT
Sbjct: 45 VTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKIT 104
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
D L L L LNL S + D GL + L L L+LS T V ++GL HL+ LT
Sbjct: 105 DAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTK 163
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
+ S++L T I+DG LR++ + S+ L+L +TD GL L +T LDL ++T
Sbjct: 164 MRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVT 222
Query: 412 ------------------------DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
D+G +L K L SL + G G+T GVK + L
Sbjct: 223 SNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLER 282
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L +L L+ +T L+ +S L L L +S++ +T GL+ + LK L +L L KV
Sbjct: 283 LRILELTGTM-VTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKV 341
Query: 508 TANDIKRLQSRDLPN 522
T + L+ + LP
Sbjct: 342 TGAGVAELR-KALPR 355
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 158/338 (46%), Gaps = 55/338 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +DLS + VTD+GL HL + L +L+ +I+D G L L+ LT L+ +
Sbjct: 67 TGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGT-KITDAGPTELAPLAVLTDLNL-SS 124
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K A L LV LDL H G+ N GL L
Sbjct: 125 TQVTDAGLKEVARLRTLVALDLS-----HTGVTN-AGLGHLT------------------ 160
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
LT ++SL + +K+TD G+ ++ +S+S L+
Sbjct: 161 --LTKMRSLSLRGTKITDGGLREIRIMSVSG---------------------------LD 191
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L G +T L L + L+L+ +++ +G ++ + +LK L+L ++ D L
Sbjct: 192 LSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELASQPTLKFLSLSRTKVGDAGLK 251
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
HL L LESL L+ G+ G+ L L L+ LEL+ T V GL+HLS L L +
Sbjct: 252 HLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTGTMVTGGGLKHLSTLPRLAILR 311
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
LS ++D L+ +A L +L +L+L ++T G+A L
Sbjct: 312 LSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAEL 349
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 155/329 (47%), Gaps = 29/329 (8%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R +T +KA A L L LDL GL +L L KL +LN+ ITD+
Sbjct: 51 RGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK-ITDAGPT 109
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ L L L +S ++VTD+G+ + L+ L
Sbjct: 110 ELAPLAVLTDLNLSSTQVTDAGLKE--------------------------VARLRTLVA 143
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L+L VT A L L+ L + L+L +++D G + +I S+ L+L +TDE
Sbjct: 144 LDLSHTGVTNAGLGHLT-LTKMRSLSLRGTKITDGGLREI-RIMSVSGLDLSGTALTDEG 201
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L + L+L + GL L LK L LS T+VG +GL+HL+ L LES
Sbjct: 202 LKDLGLFEEITGLDLSDTKVTSNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLES 261
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ L+ TG++ +++LA L L+ L L +T GL L++L L L L A +TD G
Sbjct: 262 LYLNGTGVTGTGVKELAPLERLRILELTGTMVTGGGLKHLSTLPRLAILRLSDAAVTDEG 321
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+ + K L +L++ +T AGV ++
Sbjct: 322 LKDIAHLKTLLALDLYRTKVTGAGVAELR 350
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 143/274 (52%), Gaps = 5/274 (1%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
G + ++ L ++D + + + L L+L +TD L HL LT L +LNL
Sbjct: 43 GVVTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK 102
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
I D G L L L L LS TQV +GL+ ++ L L +++LS TG+++ L L L
Sbjct: 103 ITDAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-L 161
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
+ ++SL+L +ITD GL + ++ ++ LDL G +TD G L F+ + L++
Sbjct: 162 TKMRSLSLRGTKITDGGLREIRIMS-VSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTK 220
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+T G+K + +L L+LS+ + D L+ ++ L L SL ++ + +T G++ L P
Sbjct: 221 VTSNGLKELASQPTLKFLSLSR-TKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAP 279
Query: 494 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
L+ LR L L VT +K L + LP L R
Sbjct: 280 LERLRILELTGTMVTGGGLKHLST--LPRLAILR 311
>gi|149174591|ref|ZP_01853217.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
gi|148846701|gb|EDL61038.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
Length = 346
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 1/217 (0%)
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+++ SLK+L+ + ITD + + +GL NLE+L L+ IGD GL +L L LK L L
Sbjct: 111 AQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRDLRKLKVLRLW 170
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+T V GL +L LT L +NLS T ISD L L G+ +L++L LDA Q++D GL L
Sbjct: 171 ETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDATQVSDRGLIYL 230
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L L LDL A +TD+G +L +NL+ L + ++D G+ ++ L L L++
Sbjct: 231 KELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDI- 289
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
+ N +D L + GL L LN +++IT AG L
Sbjct: 290 RYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 129/269 (47%), Gaps = 34/269 (12%)
Query: 161 NIKWCNCI--------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
N+ W + + T++D+ ++ L +LK L S S +TDS ++Y +GL + +
Sbjct: 87 NVTWISSVGYGDDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILE 146
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+ I H L L+KL +L L VT L L L L YLNL+ ++SD G
Sbjct: 147 RTSIGDAGLYH--LRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAG-- 202
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
L+HLKG+ NL++L LD+ + D GL+ L L L+ L+
Sbjct: 203 ----------------------LIHLKGMLNLQTLYLDATQVSDRGLIYLKELPKLETLD 240
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L D +V +GL HLS NL+ + L+ T ISD L L L L L++ +D GL
Sbjct: 241 LLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLV 300
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNF 421
L L L +L+ +ITD+G L F
Sbjct: 301 HLQGLKSLAYLNWESTKITDAGYTRLHEF 329
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 2/235 (0%)
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
E T+ L + L +L+ L+ S I D + GL NL+ L L T +G +GL HL
Sbjct: 101 EFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRD 160
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L L+ + L T ++D L L L+ L LNL +I+D GL L + L L L
Sbjct: 161 LRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDAT 220
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+++D G YL+ L +L++ +TDAG+ H+ + +L L L+ + ++D+ L +
Sbjct: 221 QVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLG 279
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L L L++ + + AGL HL+ LK+L L ES K+T RL LP L
Sbjct: 280 KLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF-LPKL 333
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 1/224 (0%)
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ T A L +++ L SL L+ + ++D F + +L+ L L I D L H
Sbjct: 98 DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L+ L L+ L L + D GL L L L L LS+T++ +GL HL G+ NL+++ L
Sbjct: 158 LRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYL 217
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
T +SD L L L L++L+L ++TD GL L+ L L L +I+D G Y
Sbjct: 218 DATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVY 277
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L K L L+I +DAG+ H++ L SL LN ++ +TD
Sbjct: 278 LGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNW-ESTKITD 320
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 109/220 (49%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ L+ L +L+ +T + + L +L L L R + D G + LKVL L
Sbjct: 110 IAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRDLRKLKVLRL 169
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
++TD L +LK LT L LNL I D GL++L G+ NL+ L L TQV GL +
Sbjct: 170 WETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDATQVSDRGLIY 229
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L L LE+++L ++D L L+ +LK L L QI+D GL L L L LD+
Sbjct: 230 LKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDI 289
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
+D+G +L+ K+L L +TDAG + +
Sbjct: 290 RYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF 329
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 8/236 (3%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D+ F ++ L + L +L L F ++ IT M F GL NL L LER +
Sbjct: 99 DYEF----TEADLAAIAQLKSLKILDFS-SSLITDSDMSYFQGLYNLEALILERTSIGDA 153
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS 206
GL +L+ L KL+ L + W +TD + L LT L L +S +K++D+G+ +LKG+
Sbjct: 154 GLYHLRDLRKLKVLRL-WETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNL 212
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
+++ + + ++L L KL L+L VT A L LS +L L L Q+
Sbjct: 213 QTLYLDATQVSDRGL--IYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQI 270
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
SD G K+ L L++ + +D LVHL+GL +L LN +S I D G L
Sbjct: 271 SDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
D + T+ LAA+ L L LD + ITDS +Y + NL +L + + DAG+ H
Sbjct: 98 DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
++DL L +L L + ++TD L + LT L LN+S ++I+ AGL HLK + NL++L
Sbjct: 158 LRDLRKLKVLRLWE-TDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLY 216
Query: 502 LESCKVTANDIKRLQSRDLPNL 523
L++ +V+ + L ++LP L
Sbjct: 217 LDATQVSDRGLIYL--KELPKL 236
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
D + + L ++ L +L+ ++ S + I+D + GL +L++L L+ I D GL L
Sbjct: 99 DYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHL 158
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L L L L+ +TD G +YL++ L L + ++DAG+ H+K + +L L L
Sbjct: 159 RDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLD 218
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
++D+ L + L L +L++ ++ +T AGL HL +NL+ LTL +++
Sbjct: 219 A-TQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQIS 271
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++LS + ++D+GLIHLK NLQ+L + Q+SD GL +L+ L L +L +
Sbjct: 186 TELTYLNLSETKISDAGLIHLKGMLNLQTLYLD-ATQVSDRGLIYLKELPKLETLDL-LD 243
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+ + NL KL L GLV L L +L L+I++ N +D+ + L
Sbjct: 244 AEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDIRYTNT-SDAGLVHL 302
Query: 177 SGLTNLKSLQISCSKVTDSGIAYL 200
GL +L L +K+TD+G L
Sbjct: 303 QGLKSLAYLNWESTKITDAGYTRL 326
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 53/214 (24%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L +DVTD GL +LKD + L L+ + +ISD GL HL+G+ NL +L
Sbjct: 169 LWETDVTDVGLSYLKDLTELTYLNLSET-KISDAGLIHLKGMLNLQTLY----------- 216
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
LD + + GL+ LK L KLE+L++ +TD+ + LS NLK
Sbjct: 217 ------------LDATQVS--DRGLIYLKELPKLETLDLL-DAEVTDAGLVHLSECRNLK 261
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L ++ ++++D G+ V+L L++L L++ +
Sbjct: 262 KLTLADTQISDQGL--------------------------VYLGKLKELHELDIRYTNTS 295
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
A L L L SL YLN +++D G + +
Sbjct: 296 DAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF 329
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DL ++VTD+GL+HL +C NL+ L QISD GL +L L L L R N
Sbjct: 236 LETLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLGKLKELHELDIRYTNT 294
Query: 119 ITAQGMKAFAGLINLVKLDLERC-------TRIHGGLVNLKGLMKLESLNIK 163
A G+ GL +L L+ E TR+H L L + ++ K
Sbjct: 295 SDA-GLVHLQGLKSLAYLNWESTKITDAGYTRLHEFLPKLSRTQQFPTIIFK 345
>gi|46446776|ref|YP_008141.1| hypothetical protein pc1142 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400417|emb|CAF23866.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 590
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 130/374 (34%), Positives = 193/374 (51%), Gaps = 39/374 (10%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +T++ L+ LKDC N++ L F C ++D GL HL L+ L L +T G
Sbjct: 233 LENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAG 292
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L L LDL C + GLV+L L+ L+ L + C +T + + L+ LT L
Sbjct: 293 LAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAHLTSLTAL 352
Query: 183 KSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
+ L + +C +TD+G+A+L LT+LQ L+L C
Sbjct: 353 QHLDLRNCYNLTDAGLAHLTP-----------------------LTALQH---LDLSCCY 386
Query: 242 -VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 298
+T A L L+ L +L +LNL C +L+D G + + +L+ L+L + +TD L HL
Sbjct: 387 NLTDAGLAHLTPLTALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHL 446
Query: 299 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 356
LT L LNL C + GL +LT L L+ L LS + +GL HL+ LT L+ +N
Sbjct: 447 TPLTALLHLNLSECWKLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLN 506
Query: 357 LSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDS 413
LS+ +D L L L++L+SL+L +TD GL LT LT L +LDL G + +TD+
Sbjct: 507 LSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDA 566
Query: 414 GAAYLRNFKNLRSL 427
G L FK L +L
Sbjct: 567 G---LERFKTLAAL 577
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 135/404 (33%), Positives = 204/404 (50%), Gaps = 41/404 (10%)
Query: 88 FNFCIQISDGG--LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI- 144
N IQ+S+ + HL + + +L+F N +T + A N+ L ++C +
Sbjct: 207 LNQTIQLSEFERIINHLS--NKIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVT 264
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
GL +L L L+ L + C +TD+ + L+ LT L+ L +S C +TDSG+ +L L
Sbjct: 265 DAGLAHLTPLTALQHLGLSDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPL 324
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
LQ L L + E +T A L L++L +L +L+L
Sbjct: 325 -----------------------VGLQHLGLSDCEN--LTVAGLAHLTSLTALQHLDLRN 359
Query: 264 C-QLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 319
C L+D G + + +L+ L+L +N +TD L HL LT L+ LNL C + D GL
Sbjct: 360 CYNLTDAGLAHLTPLTALQHLDLSCCYN-LTDAGLAHLTPLTALQHLNLCCCRKLTDAGL 418
Query: 320 VNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 377
+LT L L+ L+LS + +GL HL+ LT L +NLS ++ L L L +L+
Sbjct: 419 AHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQ 478
Query: 378 SLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGL 434
LNL +TD GL L LT L HL+L + + TD+G A+L L+SL++ G L
Sbjct: 479 HLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNL 538
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
TDAG+ H+ L++L L+L NLTD LE L L +L +
Sbjct: 539 TDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTI 582
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 161/286 (56%), Gaps = 10/286 (3%)
Query: 231 KLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 288
K+ LN LE +T A L +L ++ L +C+ ++D G + + +L+ L L
Sbjct: 226 KIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDC 285
Query: 289 E-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRH 345
E +TD L HL LT L+ L+L C + D GLV+LT L L+ L LSD + + +GL H
Sbjct: 286 ENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAH 345
Query: 346 LSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 403
L+ LT L+ ++L + ++D L L L++L+ L+L +TD GLA LT LT L HL
Sbjct: 346 LTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHL 405
Query: 404 DLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
+L R +TD+G A+L L+ L++ LTDAG+ H+ L++L LNLS+ LT
Sbjct: 406 NLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTG 465
Query: 462 KTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
L ++ L L LN+S + +T AGL HL PL L+ L L CK
Sbjct: 466 AGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCK 511
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 167/319 (52%), Gaps = 36/319 (11%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
VT A L L+ L +L +L L+ C+ L+D G + + +L+ L+L G +TD LVHL
Sbjct: 263 VTDAGLAHLTPLTALQHLGLSDCENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLT 322
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L L+ L L C + GL +LT L L+ L+L + + +GL HL+ LT L+ ++L
Sbjct: 323 PLVGLQHLGLSDCENLTVAGLAHLTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDL 382
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 414
S ++D L L L++L+ LNL R++TD GLA LT LT L HLDL + +TD+G
Sbjct: 383 SCCYNLTDAGLAHLTPLTALQHLNLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAG 442
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+L L L + LT AG+ H+ L +L LNLS+ NLTD L ++ LT L
Sbjct: 443 LAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTAL 502
Query: 474 VSLNVSNSR--------------------------ITSAGLRHLKPLKNLRSLTLESCK- 506
LN+S + +T AGL HL PL L+ L L CK
Sbjct: 503 QHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKN 562
Query: 507 VTANDIKRLQS-RDLPNLV 524
+T ++R ++ LPNL
Sbjct: 563 LTDAGLERFKTLAALPNLT 581
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 162/323 (50%), Gaps = 34/323 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD+GL HL + LQ LD + C ++D GL HL L L L +T G+
Sbjct: 286 ENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAH 345
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L L LDL C + GL +L L L+ L++ C +TD+ + L+ LT L+ L
Sbjct: 346 LTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHL 405
Query: 186 QI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VT 243
+ C K+TD+G+A+L LT+LQ L+L C +T
Sbjct: 406 NLCCCRKLTDAGLAHLTP-----------------------LTALQH---LDLSYCYNLT 439
Query: 244 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL 301
A L L+ L +L +LNL+ C +L+ G + + +L+ LNL N +TD LVHL L
Sbjct: 440 DAGLAHLTPLTALLHLNLSECWKLTGAGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPL 499
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-S 358
T L+ LNL C D GL +LT L L+ L+L + +GL HL+ LT L+ ++L
Sbjct: 500 TALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIG 559
Query: 359 FTGISDGSLRKLAGLSSLKSLNL 381
++D L + L++L +L +
Sbjct: 560 CKNLTDAGLERFKTLAALPNLTI 582
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD+GL+HL + LQ L+ ++C + +D GL HL L+ L SL N +T G+
Sbjct: 486 NNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVH 545
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
L L LDL C + GL K L L +L IK
Sbjct: 546 LTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTIK 583
>gi|384245058|gb|EIE18554.1| L domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 731
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/423 (33%), Positives = 224/423 (52%), Gaps = 41/423 (9%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
T + L K S LQ L+ C +I D GL+ L L++LTS++ + ITAQG+ A +G
Sbjct: 312 TGAELREWKGLSLLQELNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSG 371
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L ++ ++L+ C +I L L L +L +LN++ C+ + DS + PLS L +L+SL +S
Sbjct: 372 LSRMMDVNLQGCRKI-SSLEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSG 430
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP--VTAAC 246
C+ +T G+ + L+SL LT L L+ C +A
Sbjct: 431 CTHLTGRGL--------------------------LPLSSLTGLTALKLQHCAGIRRSAD 464
Query: 247 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEIT--DECLVHLKGLT 302
L LS L +L LNL+ C Q G + + L+ L+L G+ +T D+ L+ L L
Sbjct: 465 LAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCLRALSLDGWRHVTFIDDGLMALTSLR 524
Query: 303 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SF 359
+ SLNL C + D GL + + +L + L D Q+ G +G+ +L S++L +
Sbjct: 525 GVASLNLQGCTSLTDVGLAAIGHMTSLTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNA 584
Query: 360 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 417
+ +SD +A ++SL++LNL + +TD LAALT L L HL L G +++D+ A+
Sbjct: 585 SMVSDAGCCAIARITSLRTLNLKNCPALTDDCLAALTPLERLCHLRLQGNQQLSDAALAH 644
Query: 418 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVS 475
+L+ LE LTDAG+ + L++L L+LS +TD+ +E L+ LT LV+
Sbjct: 645 CARMPSLQHLETSNCWHLTDAGLTRLTALTTLAHLDLSYCWQVTDRGVEHLVKSLTTLVT 704
Query: 476 LNV 478
LNV
Sbjct: 705 LNV 707
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 159/536 (29%), Positives = 235/536 (43%), Gaps = 93/536 (17%)
Query: 57 SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL +DLSGS D+TD+GL+HL S L++L C+++S GL R L + LS R
Sbjct: 223 TSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAVADLSLRG 282
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMK 174
++ + A L L +LDL C R G L KGL L+ LN+K C I D+ ++
Sbjct: 283 CAQLSDALCGSVAHLEQLTRLDLRACERFTGAELREWKGLSLLQELNLKGCYKIEDAGLQ 342
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
LS LT+L S+ + C ++T G+A L GLS ++
Sbjct: 343 GLSLLTSLTSINMQECWQITAQGLAALSGLS--------------------------RMM 376
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEIT 291
+NL+GC ++ L+ L++L L LNL C L D S++ SL+ L+L G +T
Sbjct: 377 DVNLQGCRKISS-LEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLT 435
Query: 292 DECLVHLKGLTNLESLNLDSC------------------------GIGDEGLVNLTGLCN 327
L+ L LT L +L L C G E ++ L
Sbjct: 436 GRGLLPLSSLTGLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGISSLAT 495
Query: 328 LKCLE------LSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLN 380
L CL GL L+ L + S+NL T ++D L + ++SL ++N
Sbjct: 496 LTCLRALSLDGWRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTSLTNVN 555
Query: 381 L-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--------- 429
L D RQIT G A + LT L L A ++D+G + +LR+L +
Sbjct: 556 LQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCPALTDD 615
Query: 430 CGGGLT-----------------DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
C LT DA + H + SL L S +LTD L ++ LT
Sbjct: 616 CLAALTPLERLCHLRLQGNQQLSDAALAHCARMPSLQHLETSNCWHLTDAGLTRLTALTT 675
Query: 473 LVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
L L++S ++T G+ HL K L L +L + C K +R L N V+
Sbjct: 676 LAHLDLSYCWQVTDRGVEHLVKSLTTLVTLNVIGCHRLTPRAKCQVARLLGNPVNI 731
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 162/530 (30%), Positives = 259/530 (48%), Gaps = 49/530 (9%)
Query: 27 AFRDCALQDLCLGQYPGV-NDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQ 84
A+R ALQ L + V ND+ ++ +L SV L+G DVTD GL+HL S L
Sbjct: 90 AYRFPALQQLDMSACRRVSNDELANL--RHLPNLTSVVLAGCEDVTDEGLLHLSHLSRLA 147
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTR 143
SL+ + C +++DGGL L L L SL+ +++ +G+ A A L L L L +R
Sbjct: 148 SLNLSNCCKVTDGGLLALAALRQLGSLNLSGCVSLSERGLAAIAARLRRLHTLKLGGTSR 207
Query: 144 I----HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIA 198
+ + + GL L L++ + ITD+ + L L+ L++L + +C +V+ G+A
Sbjct: 208 VATISDASVAAIAGLTSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLA 267
Query: 199 YLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSL 256
+ L +++ + C+ + C V L++LT L+L C T A L L L
Sbjct: 268 VFRQLPAVADLSLRGCAQLSDALCGSV--AHLEQLTRLDLRACERFTGAELREWKGLSLL 325
Query: 257 FYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-- 312
LNL C ++ D G + S + SL +N+ +IT + L L GL+ + +NL C
Sbjct: 326 QELNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRK 385
Query: 313 ----------------------GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 349
G+GD L L+ L +L+ L+LS T + GL LS L
Sbjct: 386 ISSLEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSL 445
Query: 350 TNLESINLSF-TGISDGS-LRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLF 406
T L ++ L GI + L L+ L++L +LNL Q G+++L +LT L L L
Sbjct: 446 TGLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCLRALSLD 505
Query: 407 GAR---ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
G R D G L + + + SL + G LTD G+ I ++SLT +NL +T +
Sbjct: 506 GWRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTSLTNVNLQDCRQITGE 565
Query: 463 TLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+G+ L SL++ N S ++ AG + + +LR+L L++C +D
Sbjct: 566 GFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCPALTDD 615
>gi|290982526|ref|XP_002673981.1| predicted protein [Naegleria gruberi]
gi|284087568|gb|EFC41237.1| predicted protein [Naegleria gruberi]
Length = 363
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 196/397 (49%), Gaps = 37/397 (9%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 163
+ LTSL+ NN I+ +G K + + L L++ RI G G + + +L SLNI
Sbjct: 1 MKQLTSLNVS-NNQISGKGAKYISEMKQLTSLNISN-NRIGGKGAKYISEMKQLTSLNI- 57
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ N I+D K +S + L SL IS +++ G
Sbjct: 58 FNNRISDEGAKYISEMKQLISLDISYNQIGAEGAK------------------------- 92
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
F++ +++LT LN+ ++ +S + L LN++ +S+ G + S++ L L
Sbjct: 93 -FISEMKQLTSLNISYNEISDEGAKYISEMKQLTSLNISYNDISE-GAKPISEMKQLTSL 150
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
N+ N+I+ + ++ + L SLN+ I +G + + L L++S+ Q+ G
Sbjct: 151 NVSNNQISGKGAKYISEMKQLTSLNISDNQISGKGAKYIGEMKQLTSLDISNNQISDEGA 210
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ LS + L S+N+S IS + ++ + L SLN+ QI+D ++ + LT L
Sbjct: 211 KFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLTSLNISNNQISDERAKYISEMKQLTSL 270
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
D+F I+D GA Y+ K+L SL+I ++ HI ++ LT LN+S N + D+
Sbjct: 271 DIFNNLISDEGAKYISEMKHLTSLDISYNEIS-----HISEMKQLTSLNISFN-QINDEG 324
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ IS + L SL++S +RI G +++ +K+L SL
Sbjct: 325 AKSISEMKQLTSLDMSYNRIGGEGAKYISEMKHLTSL 361
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 148/274 (54%), Gaps = 2/274 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT LN+ ++ +S + L LN++ ++ G + S++ L LN+ N
Sbjct: 1 MKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFNN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I+DE ++ + L SL++ IG EG ++ + L L +S ++ G +++S
Sbjct: 61 RISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISE 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ L S+N+S+ IS+G+ + ++ + L SLN+ QI+ G ++ + LT L++
Sbjct: 121 MKQLTSLNISYNDISEGA-KPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDN 179
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+I+ GA Y+ K L SL+I ++D G K + ++ L LN+S N ++ K + +S
Sbjct: 180 QISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVS-NNQISGKEAKFMS 238
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ L SLN+SN++I+ +++ +K L SL +
Sbjct: 239 EMKQLTSLNISNNQISDERAKYISEMKQLTSLDI 272
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 152/274 (55%), Gaps = 9/274 (3%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
LN++ Q+S G + S++ L LN+ N I + ++ + L SLN+ + I DEG
Sbjct: 7 LNVSNNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFNNRISDEG 66
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
++ + L L++S Q+G+ G + +S + L S+N+S+ ISD + ++ + L S
Sbjct: 67 AKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISEMKQLTS 126
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
LN+ I++ G ++ + LT L++ +I+ GA Y+ K L SL I ++ G
Sbjct: 127 LNISYNDISE-GAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDNQISGKG 185
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
K+I ++ LT L++S N ++D+ + +S + L+SLNVSN++I+ + + +K L
Sbjct: 186 AKYIGEMKQLTSLDIS-NNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLT 244
Query: 499 SLTLESCKVT------ANDIKRLQSRDL-PNLVS 525
SL + + +++ +++K+L S D+ NL+S
Sbjct: 245 SLNISNNQISDERAKYISEMKQLTSLDIFNNLIS 278
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 173/374 (46%), Gaps = 59/374 (15%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + ++D G ++ + L SLD ++ QI G + + + LTSL+
Sbjct: 47 SEMKQLTSLNIFNNRISDEGAKYISEMKQLISLDISYN-QIGAEGAKFISEMKQLTSLNI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I+ +G K + + +L SLNI + N I++
Sbjct: 106 SY-NEISDEGAKYIS------------------------EMKQLTSLNISY-NDISEG-A 138
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
KP+S + L SL +S ++++ G Y ++ +++LT
Sbjct: 139 KPISEMKQLTSLNVSNNQISGKGAKY--------------------------ISEMKQLT 172
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LN+ ++ + + L L+++ Q+SD+G + S++ L LN+ N+I+ +
Sbjct: 173 SLNISDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGK 232
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ + L SLN+ + I DE ++ + L L++ + + G +++S + +L
Sbjct: 233 EAKFMSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYISEMKHLT 292
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
S+++S+ IS ++ + L SLN+ QI D G +++ + LT LD+ RI
Sbjct: 293 SLDISYNEISH-----ISEMKQLTSLNISFNQINDEGAKSISEMKQLTSLDMSYNRIGGE 347
Query: 414 GAAYLRNFKNLRSL 427
GA Y+ K+L SL
Sbjct: 348 GAKYISEMKHLTSL 361
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ + I +G ++ + L L +S+ ++G G +++S + L S+N+
Sbjct: 1 MKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISNNRIGGKGAKYISEMKQLTSLNIFNN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
ISD + ++ + L SL++ QI G ++ + LT L++ I+D GA Y+
Sbjct: 61 RISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISE 120
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L SL I +++ G K I ++ LT LN+S N ++ K + IS + L SLN+S+
Sbjct: 121 MKQLTSLNISYNDISE-GAKPISEMKQLTSLNVS-NNQISGKGAKYISEMKQLTSLNISD 178
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
++I+ G +++ +K L SL + + +++ K L ++ L+S
Sbjct: 179 NQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFL--SEMKQLISL 222
>gi|46446665|ref|YP_008030.1| hypothetical protein pc1031 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400306|emb|CAF23755.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 553
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 183/370 (49%), Gaps = 34/370 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C ++D GL HL L+ L L +T G+
Sbjct: 207 LTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLSYCENLTDDGLAHLT 266
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L L L+ L + C +TD+ + L+ LT L+ L +
Sbjct: 267 PLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDL 326
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCPVTA 244
S K+TD+G+A+LK L ++ + LC + H+ LT+LQ L L +T
Sbjct: 327 SQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRN--LTD 384
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
A L L+ L L YLNL+ C+ +TD L HL LT L
Sbjct: 385 AGLAHLTPLMGLQYLNLSACK-----------------------NLTDAGLAHLAPLTAL 421
Query: 305 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TG 361
+ LNL SC + D GLV+L L L+ L LSD + + +GL HL+ LT L+ +NLS
Sbjct: 422 QHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRK 481
Query: 362 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 419
++D L L L +L L+L + TD GL LT LTGL +L L +TD G A +
Sbjct: 482 LTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFK 541
Query: 420 NFKNLRSLEI 429
+L+I
Sbjct: 542 TLAVSHNLKI 551
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 109/274 (39%), Positives = 159/274 (58%), Gaps = 9/274 (3%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLK 299
VT A L L+ L +L L+L+ C+ L+DDG + + +L+ L+L + E +TD+ L HL
Sbjct: 232 VTDAGLAHLTPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLA 291
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINL 357
L L+ L L +C + D GL +LT L L+ L+LS ++ +GL HL LT L+ ++L
Sbjct: 292 PLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDL 351
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 414
S ++D + L L++L+ L+L R +TD GLA LT L GL +L+L + +TD+G
Sbjct: 352 SLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAG 411
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+L L+ L + LTDAG+ H+ L++L L LS NLTD L ++ LT L
Sbjct: 412 LAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTAL 471
Query: 474 VSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 506
LN+SN R +T GL HLK L L L L CK
Sbjct: 472 QHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCK 505
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 126/353 (35%), Positives = 186/353 (52%), Gaps = 14/353 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL-SISSVIFI 211
L K+E+LN +TD+ + L NLK L C VTD+G+A+L L ++ +
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDD 269
C + H LT L L L+L C +T L L+ L +L L L C+ L+D
Sbjct: 253 YCENLTDDGLAH--LTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDA 310
Query: 270 GCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 327
G + + +L+ L+L + ++TD L HLK LT L+ L+L C + D G+ +L L
Sbjct: 311 GLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTA 370
Query: 328 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 384
L+ L+LS + + +GL HL+ L L+ +NLS ++D L LA L++L+ LNL +
Sbjct: 371 LQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCY 430
Query: 385 QITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 442
+TD GL L LT L HL L +TD+G A+L L+ L + LTD G+ H+
Sbjct: 431 NLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHL 490
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPL 494
K L +LT L+LS N TD+ L ++ LTGL L +S +T GL K L
Sbjct: 491 KSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTL 543
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 142/235 (60%), Gaps = 10/235 (4%)
Query: 281 KVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 336
K+ L F++ +TD L+ LK NL+ L+ C G+ D GL +LT L L+ L+LS
Sbjct: 195 KIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLSYC 254
Query: 337 Q-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAA 393
+ + GL HL+ LT L+ ++LS+ ++D L LA L +L+ L L + + +TD GL
Sbjct: 255 ENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGLTH 314
Query: 394 LTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLL 451
LT+LT L HLDL ++TD+G A+L+ L+ L++ LTDAG+ H+K L++L L
Sbjct: 315 LTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHL 374
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 505
+LSQ NLTD L ++ L GL LN+S + +T AGL HL PL L+ L L SC
Sbjct: 375 DLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSC 429
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 170/300 (56%), Gaps = 11/300 (3%)
Query: 229 LQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 286
L+K+ LN + +T A L +L +L L+ +C ++D G + + +L+ L+L
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 287 FNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGL 343
+ E +TD+ L HL LT L+ L+L C + D+GL +L L L+ L L++ + + +GL
Sbjct: 253 YCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGL 312
Query: 344 RHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLT 401
HL+ LT L+ ++LS + ++D L L L++L+ L+L +TD G+A L LT L
Sbjct: 313 THLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQ 372
Query: 402 HLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
HLDL R +TD+G A+L L+ L + LTDAG+ H+ L++L LNLS NL
Sbjct: 373 HLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNL 432
Query: 460 TDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 517
TD L + LT L L +S+ +T GL HL PL L+ L L +C K+T + + L+S
Sbjct: 433 TDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKS 492
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 125/271 (46%), Gaps = 56/271 (20%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HLK + LQ LD + C ++D G+ HL+ L+ L L + +T
Sbjct: 332 LTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTD------- 384
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI- 187
GL +L LM L+ LN+ C +TD+ + L+ LT L+ L +
Sbjct: 385 -----------------AGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLS 427
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
SC +TD+G+ +L L+ H++L+ + L T L
Sbjct: 428 SCYNLTDAGLVHLIPLTALQ---------------HLYLSDWENL----------TDTGL 462
Query: 248 DSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 305
L+ L +L +LNL+ C +L+DDG + +L L+L + TDE L HL LT L+
Sbjct: 463 AHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQ 522
Query: 306 SLNLDSC-GIGDEGLVNLTGLC---NLKCLE 332
L L C + D+GL L NLK ++
Sbjct: 523 YLVLSLCYHLTDDGLARFKTLAVSHNLKIIK 553
>gi|296124076|ref|YP_003631854.1| ribonuclease inhibitor [Planctomyces limnophilus DSM 3776]
gi|296016416|gb|ADG69655.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Planctomyces
limnophilus DSM 3776]
Length = 474
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 153/319 (47%), Gaps = 3/319 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I D D+ ++ LT+L L++ K+TD G+ LK L+ V+ + + + L
Sbjct: 117 IGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGA--EVLA 174
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
S L +L L + L LS L L L+L ++D+G + + + L+ L L
Sbjct: 175 SFPNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQA 234
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+TD L + L NL+ LN+ D GL L L+ LEL DT++ S GL L
Sbjct: 235 TRVTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLG 294
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
GLTNLE +++ T I + L + + ++ L L TD GL A++ L L LDL
Sbjct: 295 GLTNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTE 354
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
D G L +L L + +DAG++ I+DL L LNL Q +TD + I
Sbjct: 355 GIFGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQ-TRITDAAAKTI 413
Query: 468 SGLTGLVSLNVSNSRITSA 486
+G L LN+S + +T A
Sbjct: 414 AGFGELTELNLSQTEVTDA 432
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 1/285 (0%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ L LT L LEG +T + L L +L L L QL+D G E + +L+VL
Sbjct: 123 ALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASFPNLEVL 182
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
L I D L HL L L +L+L + DEG+ +L GL L+ L L T+V + L
Sbjct: 183 YLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATRVTDASL 242
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
++ L NL+ +N+ +D L +LA +L+ L LD ++T GL L LT L L
Sbjct: 243 PLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEEL 302
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+ RI + G A ++N +R L + TD G++ + L +L L+L++ D
Sbjct: 303 HVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGI-FGDDG 361
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
++ ++GLT L L++ + + AG+ ++ LK L++L LE ++T
Sbjct: 362 VKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRIT 406
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 160/344 (46%), Gaps = 28/344 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D L + L++LT L IT +G+ L NLV L LE G L
Sbjct: 117 IGDDDLALVAKLTHLTELRLE-GPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLAS 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
LE L ++ N I D + LS L L++L + + VTD G+ L GLS
Sbjct: 176 FPNLEVLYLRRTN-ILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLS--------- 225
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+L L L+ VT A L ++ L +L LN+ +D G +
Sbjct: 226 -----------------QLRDLRLQATRVTDASLPLIAKLPNLQKLNVWGENFTDAGLSQ 268
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
+ +L++L L +T E L+ L GLTNLE L++ I ++GL + + ++ L L
Sbjct: 269 LADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAVVKNMPKMRRLLL 328
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
DT GL +SGL NL ++L+ D ++ LAGL+SL+ L+L A +D G+ +
Sbjct: 329 RDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLEDLSLWATTTSDAGIES 388
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
+ L L L+L RITD+ A + F L L + +TDA
Sbjct: 389 IRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTDA 432
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 140/284 (49%), Gaps = 25/284 (8%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ DD +K+ L L L +ITD+ ++ LK LTNL L L++ + D G L
Sbjct: 117 IGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASF 176
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
NL+ L L T + L HLS L L +++L FT ++D ++ LAGLS L+ L L A +
Sbjct: 177 PNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATR 236
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
+TD L + L L L+++G TD+G + L + K LR LE+ LT G+ + L
Sbjct: 237 VTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGL 296
Query: 446 SSLTLLNLS----QNCNL-------------------TDKTLELISGLTGLVSLNVSNSR 482
++L L++ +N L TD LE +SGL LV L+++
Sbjct: 297 TNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGI 356
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
G+++L L +L L+L + + I+ + RDL L +
Sbjct: 357 FGDDGVKNLAGLTSLEDLSLWATTTSDAGIESI--RDLKKLKAL 398
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 1/182 (0%)
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
++T +G L ++ LT+L + L I+D + L L++L L L+ Q+TDTG
Sbjct: 113 AETSIGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEV 172
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L S L L L I D A+L LR+L++ +TD G+K + LS L L L
Sbjct: 173 LASFPNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRL 232
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
Q +TD +L LI+ L L LNV T AGL L K LR L L+ ++T+ +
Sbjct: 233 -QATRVTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLI 291
Query: 514 RL 515
+L
Sbjct: 292 KL 293
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 31/211 (14%)
Query: 20 LTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
T V+ E + A L+DL L Q V D + +IA + +L +++ G + TD+GL
Sbjct: 210 FTNVTDEGMKSLAGLSQLRDLRL-QATRVTDASLPLIA-KLPNLQKLNVWGENFTDAGLS 267
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR----NNAI------------ 119
L D L+ L+ + +++ GL L GL+NL L RR N+ +
Sbjct: 268 QLADTKTLRILELDDT-RLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAVVKNMPKMRRL 326
Query: 120 -------TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
T G++A +GL NLV+LDL G+ NL GL LE L++ W +D+
Sbjct: 327 LLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLEDLSL-WATTTSDAG 385
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
++ + L LK+L + +++TD+ + G
Sbjct: 386 IESIRDLKKLKALNLEQTRITDAAAKTIAGF 416
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 51/262 (19%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L ++DL ++VTD G+ L S L+ L +++D L + L NL L+
Sbjct: 198 SKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQ-ATRVTDASLPLIAKLPNLQKLNV 256
Query: 114 RRNN-----------------------AITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
N +T++G+ GL NL +L + R + GL
Sbjct: 257 WGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAV 316
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
+K + K+ L ++ C TD ++ +SGL NL L ++ D G+ L G
Sbjct: 317 VKNMPKMRRLLLRDTLC-TDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAG-------- 367
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
LTSL+ L+L + A ++S+ L L LNL + +++D
Sbjct: 368 ---------------LTSLEDLSLW---ATTTSDAGIESIRDLKKLKALNLEQTRITDAA 409
Query: 271 CEKFSKIGSLKVLNLGFNEITD 292
+ + G L LNL E+TD
Sbjct: 410 AKTIAGFGELTELNLSQTEVTD 431
>gi|168698162|ref|ZP_02730439.1| hypothetical protein GobsU_01482 [Gemmata obscuriglobus UQM 2246]
Length = 295
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 145/276 (52%), Gaps = 1/276 (0%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
VT A L L+ L +L L L ++D G E+ + + +L L+LG ++TD L L L
Sbjct: 12 VTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKALAPL 71
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T L L L G+ D GL L +LK L L T+V +GL+ L NL + L TG
Sbjct: 72 TGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLGGTG 131
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
++D LR+L +L +L L +TD GL L L LT L L G + D G L F
Sbjct: 132 VTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAPF 191
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
KNL L++ +TDAG+K + L +LTLL+L + +TD L ++GL L +L + +
Sbjct: 192 KNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGR-TQVTDDGLRELTGLKALTTLILIGT 250
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+T AGL+ L L NL L L KVT K L+S
Sbjct: 251 GVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 153/330 (46%), Gaps = 52/330 (15%)
Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
W + +TD+ +K L+GLTNL L + + VTD G+ L
Sbjct: 7 WRDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEEL---------------------- 44
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
L+ L L+L VT A L +L+ L L L L ++D G ++ SLK
Sbjct: 45 ----APLKNLNTLDLGKTKVTDAGLKALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKT 100
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L L ++TD L L NL L L G+ D GL L NL L LS T V +G
Sbjct: 101 LYLFSTKVTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAG 160
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
L+ L+ L NL + L TG++D L++LA +L L+L + ++TD GL L L LT
Sbjct: 161 LKELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTL 220
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
LDL ++TD G L K L +L + G G+TDAG+K
Sbjct: 221 LDLGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKE--------------------- 259
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLK 492
++GLT L LN+ +++T AG + LK
Sbjct: 260 ----LAGLTNLTRLNLYRTKVTDAGWKELK 285
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 149/305 (48%), Gaps = 28/305 (9%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+Q++D GL+ L GL+NLT L A+T G++ A L NL LDL + GL L
Sbjct: 10 LQVTDAGLKELAGLTNLTQLIL-LGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
L L L + +TD+ +K L +LK+L + +KVTD+G+ L
Sbjct: 69 APLTGLTRLALG-DTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELG---------- 117
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
+ LT+L L G VT A L L +L L L+ ++D G
Sbjct: 118 ----------------RFKNLTVLGLGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGL 161
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
++ + + +L L LG + D L L NL L+L S + D GL L L NL L
Sbjct: 162 KELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLL 221
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
+L TQV GLR L+GL L ++ L TG++D L++LAGL++L LNL ++TD G
Sbjct: 222 DLGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGW 281
Query: 392 AALTS 396
L S
Sbjct: 282 KELKS 286
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 1/181 (0%)
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
D QV +GL+ L+GLTNL + L T ++D L +LA L +L +L+L ++TD GL AL
Sbjct: 9 DLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
LTGLT L L +TD+G L FK+L++L + +TDAG+K + +LT+L L
Sbjct: 69 APLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLG 128
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+TD L + L +L +S + +T AGL+ L PLKNL L L V +K
Sbjct: 129 -GTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187
Query: 515 L 515
L
Sbjct: 188 L 188
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 142/322 (44%), Gaps = 41/322 (12%)
Query: 26 EAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS 85
+ +RD + D L + G+ ++L + L G+ VTD GL L NL +
Sbjct: 5 KPWRDLQVTDAGLKELAGL------------TNLTQLILLGTAVTDVGLEELAPLKNLNT 52
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD +++D GL+ L L+ LT L+ + +T G+K +L L L
Sbjct: 53 LDLGKT-KVTDAGLKALAPLTGLTRLAL-GDTGVTDAGLKELVPFKSLKTLYLFSTKVTD 110
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
GL L L L + +TD+ ++ L NL +L +S + VTD+G+
Sbjct: 111 AGLKELGRFKNLTVLGLG-GTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKE------ 163
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
L L+ LT L L G V L L+ +L L+L +
Sbjct: 164 --------------------LAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTK 203
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
++D G ++ + +L +L+LG ++TD+ L L GL L +L L G+ D GL L GL
Sbjct: 204 VTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGL 263
Query: 326 CNLKCLELSDTQVGSSGLRHLS 347
NL L L T+V +G + L
Sbjct: 264 TNLTRLNLYRTKVTDAGWKELK 285
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
++ +TD L+ ++GLT L L + + +T GL L PLKNL +L L KVT +K
Sbjct: 8 RDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKA 67
Query: 515 L 515
L
Sbjct: 68 L 68
>gi|217074836|gb|ACJ85778.1| unknown [Medicago truncatula]
Length = 81
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLESCKVTAN
Sbjct: 3 LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTAN 62
Query: 511 DIKRLQSRDLPNLVSFRPE 529
DIK+ + LPNLVSFRPE
Sbjct: 63 DIKKFKLIHLPNLVSFRPE 81
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+TD + + LT L L+L RIT +G +L+ KNLRSL + +T +K K
Sbjct: 11 LTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFK 68
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQI 94
L L Q + DK +++IA ++L+S++LS + +T +GL HLK NL+SL C +
Sbjct: 3 LNLSQNSNLTDKTVELIAGL-TALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTA 61
Query: 95 SDGGLEHLRGLSNLTSLSFR 114
+D L L NL +SFR
Sbjct: 62 NDIKKFKLIHLPNL--VSFR 79
>gi|290973802|ref|XP_002669636.1| predicted protein [Naegleria gruberi]
gi|284083186|gb|EFC36892.1| predicted protein [Naegleria gruberi]
Length = 548
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 125/391 (31%), Positives = 193/391 (49%), Gaps = 16/391 (4%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L NLT L RN I +K + L NL KL+L + G ++ L L +L++ +
Sbjct: 114 LVNLTQLDLCRN-KIKPTVVKGLSSLTNLKKLNLGHNEIGNDGAKHVSSLTHLTALDL-F 171
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
N I + + LS LTNL L + +++ D+G ++ L+ + + + I +L V
Sbjct: 172 DNGIGPNGAQRLSSLTNLTQLNLGNNEIGDAGAEHISSLTNLTQLNL---RITKLGANGV 228
Query: 225 -FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
L L+KLT L+L G + +++LS L +L LNL +++ DG E+ + +L L
Sbjct: 229 KSLRGLKKLTELDLSGNQIGYEGVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTEL 288
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+L HL L NL +NL IG G L L NL L L +G+
Sbjct: 289 DLRAE--------HLSQLKNLTQINLCLNQIGPNGAERLCELTNLTQLNLRSNLIGAIKA 340
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L L NL ++L + I D ++L+ L L L+L QI G +L+ LT LTHL
Sbjct: 341 ESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHL 400
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
DL G I D GA +L K L L + + D G K++ +L+ LT L+L N + D
Sbjct: 401 DLNGNGIED-GAQHLSKLKKLTRLGLNDNRIGDDGAKYLSELNKLTHLSLDNN-GIGDTG 458
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
E +S L + L++ ++ I +AG +HL+ L
Sbjct: 459 AECLSKLKNITYLSLDDNEIETAGKKHLRKL 489
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 141/297 (47%), Gaps = 18/297 (6%)
Query: 228 SLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
+ K+ L ++G + C + L +L L+L R ++ + S + +LK LNLG
Sbjct: 88 EMDKVLSLTIDGVELIEEQCGTISTKLVNLTQLDLCRNKIKPTVVKGLSSLTNLKKLNLG 147
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
NEI ++ H+ LT+L +L+L GIG G L+ L NL L L + ++G +G H+
Sbjct: 148 HNEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNNEIGDAGAEHI 207
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
S LTNL +NL T + ++ L GL L L+L QI G+ L+ L L L+L
Sbjct: 208 SSLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLSELKNLKKLNLG 267
Query: 407 GARITDSG----------------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
RIT G A +L KNL + +C + G + + +L++LT
Sbjct: 268 NNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPNGAERLCELTNLTQ 327
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
LNL N K E + L L L++ +RI G + L LK L L L ++
Sbjct: 328 LNLRSNLIGAIKA-ESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQLDLSGNQI 383
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 168/365 (46%), Gaps = 47/365 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L +++ + G H+ ++L +LD F I G + L L+NLT L+ N
Sbjct: 139 TNLKKLNLGHNEIGNDGAKHVSSLTHLTALDL-FDNGIGPNGAQRLSSLTNLTQLNLG-N 196
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G + + L NL +L+L R T++ G+ +L+GL KL L++ N I +
Sbjct: 197 NEIGDAGAEHISSLTNLTQLNL-RITKLGANGVKSLRGLKKLTELDLSG-NQIGYEGVNN 254
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL-------FCLHVF--- 225
LS L NLK L + +++T G L GL + + + + +L CL+
Sbjct: 255 LSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPN 314
Query: 226 ----LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L L LT LNL + A +SL L +L L+L ++ DDG ++ SK+ L
Sbjct: 315 GAERLCELTNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLT 374
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-----------------------IGDEG 318
L+L N+I L LTNL L+L+ G IGD+G
Sbjct: 375 QLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGIEDGAQHLSKLKKLTRLGLNDNRIGDDG 434
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS---LRKLA--GL 373
L+ L L L L + +G +G LS L N+ ++L I LRKL GL
Sbjct: 435 AKYLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGKKHLRKLIRCGL 494
Query: 374 SSLKS 378
S+++
Sbjct: 495 CSIRT 499
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 26/252 (10%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF------------ 88
Y GVN+ S+ +L ++L + +T G L NL LD
Sbjct: 249 YEGVNN------LSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLT 302
Query: 89 --NFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
N C+ QI G E L L+NLT L+ R +N I A ++ L NL +LDL
Sbjct: 303 QINLCLNQIGPNGAERLCELTNLTQLNLR-SNLIGAIKAESLCKLENLTQLDLGYNRIED 361
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G L L KL L++ N I + LS LTNL L ++ + + D G +L L
Sbjct: 362 DGAQRLSKLKKLTQLDLSG-NQIGSIGAQSLSELTNLTHLDLNGNGIED-GAQHLSKLKK 419
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
+ + + + I +L+ L KLT L+L+ + + LS L ++ YL+L+ +
Sbjct: 420 LTRLGLNDNRIGDDGA--KYLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNE 477
Query: 266 LSDDGCEKFSKI 277
+ G + K+
Sbjct: 478 IETAGKKHLRKL 489
>gi|406830023|ref|ZP_11089617.1| hypothetical protein SpalD1_00247 [Schlesneria paludicola DSM
18645]
Length = 374
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 153/300 (51%), Gaps = 26/300 (8%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+L + LNLN +++D G + SL +L L F +ITD LV LK L NL L+
Sbjct: 70 ALKPFTKMTSLNLNSTKITDSGLKGIRNFTSLTMLTLAFTKITDVGLVELKDLKNLTRLD 129
Query: 309 LDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
L C I D GL + L +L L LS TQ GL+ L+ L L ++ L T I+D L
Sbjct: 130 LGGCTAITDVGLNEIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGL 189
Query: 368 ------------------------RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
R+L GL +L+ L+L +ITD GL + L + L
Sbjct: 190 KELGTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSL 249
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
LFG ITD G + NL L++ +T+ G+K I L +L L+L + +TD
Sbjct: 250 YLFGDEITDEGMQSIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVG 309
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L+ I +T L ++N+ + IT+AGL+ L+ LKNL+SL + +VT+ + LQ ++LP L
Sbjct: 310 LKEIGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGVVALQ-KELPKL 368
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 181/376 (48%), Gaps = 56/376 (14%)
Query: 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G ++ V+L S+ G +H LK + + SL+ N +I+D GL+ +R ++LT L+
Sbjct: 49 GRPVIYVNLQQSERFGDGYVHALKPFTKMTSLNLN-STKITDSGLKGIRNFTSLTMLTL- 106
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
AF + ++ GLV LK L L L++ C ITD +
Sbjct: 107 -----------AFTKITDV-------------GLVELKDLKNLTRLDLGGCTAITDVGLN 142
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+ LT+L SL +S ++ TD G+ L L C L+
Sbjct: 143 EIKELTSLASLHLSYTQFTDVGLKELADLK--------C------------------LSN 176
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L L G +T L L L SL L L + ++SD G + + +L++L+LG EITDE
Sbjct: 177 LELRGTQITDDGLKELGTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDLGLTEITDEG 236
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L + L + SL L I DEG+ ++ L NL L+L T++ + GL+ +SGL NL+
Sbjct: 237 LKEIIDLKQIHSLYLFGDEITDEGMQSIGELNNLTELDLIQTEITNEGLKEISGLKNLKK 296
Query: 355 INLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
++L G I+D L+++ ++ L ++NL IT+ GL L +L L LD+ +T
Sbjct: 297 LHLLNDGKITDVGLKEIGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLDVSETEVTSE 356
Query: 414 GAAYLRNFKNLRSLEI 429
G L+ K L L+I
Sbjct: 357 GVVALQ--KELPKLDI 370
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 2/180 (1%)
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+ G + L T + S+NL+ T I+D L+ + +SL L L +ITD GL L
Sbjct: 62 RFGDGYVHALKPFTKMTSLNLNSTKITDSGLKGIRNFTSLTMLTLAFTKITDVGLVELKD 121
Query: 397 LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L LT LDL G ITD G ++ +L SL + TD G+K + DL L+ L L +
Sbjct: 122 LKNLTRLDLGGCTAITDVGLNEIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLEL-R 180
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+TD L+ + LT L L + ++I+ GLR LK L+NL+ L L ++T +K +
Sbjct: 181 GTQITDDGLKELGTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEI 240
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLS----SLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
K + +E+ GG K ++D S + +NL Q+ D + + T + SLN
Sbjct: 29 KAIEKIELLGG-------KVMRDESLPGRPVIYVNLQQSERFGDGYVHALKPFTKMTSLN 81
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
+++++IT +GL+ ++ +L LTL K+T D+ ++ +DL NL
Sbjct: 82 LNSTKITDSGLKGIRNFTSLTMLTLAFTKIT--DVGLVELKDLKNL 125
>gi|290973212|ref|XP_002669343.1| predicted protein [Naegleria gruberi]
gi|284082889|gb|EFC36599.1| predicted protein [Naegleria gruberi]
Length = 440
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 166/308 (53%), Gaps = 11/308 (3%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
+ +L SLNI + N I D ++K +S + L SL I ++V D G YL S + L
Sbjct: 117 AMKQLTSLNI-YDNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYL------SEMKQL 169
Query: 213 CSMIIRLFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
S+ I + + +L+ +++LT LN+ + + +S + L LN+++ ++S+
Sbjct: 170 TSLNIGYNRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSN 229
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G + S++ L++LN+ NEI DE + +L + L SL++ IG EG+ ++ + L
Sbjct: 230 EGAKYLSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQL 289
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L++S+ ++ G ++LS + L S+N+ ++ I ++ ++ + L SL + +I
Sbjct: 290 TSLDISENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSLTIAYNRIGI 349
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
G ++ + L LD+ I+D GA YL K L SL I G+ GVK+I ++ L
Sbjct: 350 KGAKLISEMKQLRLLDISNNEISDEGAKYLSEMKQLISLYISEIGIGIKGVKYISEMKQL 409
Query: 449 TLLNLSQN 456
LL++++N
Sbjct: 410 RLLDITRN 417
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 179/353 (50%), Gaps = 5/353 (1%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-YLKGLSISSVIFI-LCSMIIRLFCL 222
C+ I+ K + + L ++Q K T+ + ++K ++S++ + S +++
Sbjct: 54 CSLISKQFFKVIKERSKL-AIQFQ-KKFTEKRVKLFMKSQFMNSIVKVKFSSRLLQAIET 111
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
++++++LT LN+ + + +S + L LN+ ++ D+G + S++ L
Sbjct: 112 PKLISAMKQLTSLNIYDNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYLSEMKQLTS 171
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
LN+G+N + E +L + L SLN+ IG EG+ ++ + L L +S +V + G
Sbjct: 172 LNIGYNRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSNEG 231
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++LS + L +N+ I D ++ L+ + L SL++ +I G+ ++ + LT
Sbjct: 232 AKYLSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQLTS 291
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
LD+ I+D GA YL + L SL I + GVK+I ++ LT L ++ N + K
Sbjct: 292 LDISENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSLTIAYN-RIGIK 350
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+LIS + L L++SN+ I+ G ++L +K L SL + + +K +
Sbjct: 351 GAKLISEMKQLRLLDISNNEISDEGAKYLSEMKQLISLYISEIGIGIKGVKYI 403
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 32/254 (12%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S ++V++ G +L + L+ L+ + +I D G+++L + LTSL
Sbjct: 212 SEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNI-YHNEIGDEGVKYLSEMKQLTSLHI 270
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G+K + + L LD+ G L + +L SLNI + I +
Sbjct: 271 GYNR-IGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDYSR-IGLEGV 328
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S + L SL I+ +++ GI KG + ++ +++L
Sbjct: 329 KYISEMKQLTSLTIAYNRI---GI---KGAKL--------------------ISEMKQLR 362
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LL++ ++ LS + L L ++ + G + S++ L++L++ N I E
Sbjct: 363 LLDISNNEISDEGAKYLSEMKQLISLYISEIGIGIKGVKYISEMKQLRLLDITRNRIGKE 422
Query: 294 ---CLVHLKGLTNL 304
L +K LT L
Sbjct: 423 GAKLLSEMKQLTPL 436
>gi|46445833|ref|YP_007198.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399474|emb|CAF22923.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 337
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 154/294 (52%), Gaps = 19/294 (6%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLN 284
+ L L L L C +T A L L +L +L +LNL+ C L+D G + + +L+ LN
Sbjct: 1 MRPLVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLN 60
Query: 285 LGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK------CLELSDT 336
L ++T L HL L LE+L+L CG + D GL +LT L L+ C +L+D
Sbjct: 61 LSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDV 120
Query: 337 QVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 394
GL HL L L+ ++L + ++D L L L +L+ LNL +TD GLA L
Sbjct: 121 -----GLAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHL 175
Query: 395 TSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 452
L L HLDL G +TD+G A+L L+ L + G TDAG+ H+ L +L LN
Sbjct: 176 RPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLN 235
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
LS NLTD L + L L LN+S S++T AGL HL PL L L L C
Sbjct: 236 LSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQC 289
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 187/357 (52%), Gaps = 35/357 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L +TD+GL HLK LQ L+ ++C ++D GL HL L+ L L+
Sbjct: 6 ALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSVCG 65
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+ L+ L LDL +C ++ GL +L L+ L+ L ++ C +TD + L
Sbjct: 66 KLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLAHL 125
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L L+ L + CS +TD+G+A+L+ L +LQ L
Sbjct: 126 RPLVALQHLDLDGCSNLTDAGLAHLRP-----------------------LVALQH---L 159
Query: 236 NLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITD 292
NL+ C +T L L L +L +L+L+ C L+D G + + +L+ LNL G + TD
Sbjct: 160 NLKRCDNLTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTD 219
Query: 293 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 350
L HL L L+ LNL C + D GL +L L L+ L LS +++ +GL HL+ L
Sbjct: 220 AGLAHLTPLVALQYLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLV 279
Query: 351 NLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 405
LE ++LS G ++D L LA L++L+ LNL+ R++TD GLA +L +L+L
Sbjct: 280 ALEDLDLSQCGKLTDAGLAHLALLTALQYLNLERCRKLTDAGLAHFKTLAASIYLNL 336
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 122/337 (36%), Positives = 183/337 (54%), Gaps = 15/337 (4%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L+ L L+L C GL +LK L+ L+ LN+ WC+ +TD+ + L+ LT L+ L +S
Sbjct: 4 LVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSV 63
Query: 189 CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAAC 246
C K+T +G+A+L L ++ ++ C + H LT L L L + GC +T
Sbjct: 64 CGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAH--LTPLVALQHLGMRGCRKLTDVG 121
Query: 247 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 304
L L L +L +L+L+ C L+D G + +L+ LNL + +TD L HL+ L L
Sbjct: 122 LAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVAL 181
Query: 305 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLS-FTG 361
+ L+LD C + D GL +LT L L+ L L + +GL HL+ L L+ +NLS +
Sbjct: 182 QHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSN 241
Query: 362 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLR 419
++D L L L +L+ LNL ++T GLA LT L L LDL ++TD+G A+L
Sbjct: 242 LTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLA 301
Query: 420 NFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ +LE C LTDAG+ H K L++ LNL
Sbjct: 302 LLTALQYLNLERC-RKLTDAGLAHFKTLAASIYLNLQ 337
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 179/333 (53%), Gaps = 16/333 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQK 231
M+PL L + L++ C K+TD+G+A+LK L ++ + C + H LT L
Sbjct: 1 MRPLVAL---QHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAH--LTPLTA 55
Query: 232 LTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFN 288
L LNL C +T A L L+ L +L L+L++C +L+D G + + +L+ L + G
Sbjct: 56 LQHLNLSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCR 115
Query: 289 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 346
++TD L HL+ L L+ L+LD C + D GL +L L L+ L L + GL HL
Sbjct: 116 KLTDVGLAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHL 175
Query: 347 SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 404
L L+ ++L ++D L L L +L+ LNL + TD GLA LT L L +L+
Sbjct: 176 RPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLN 235
Query: 405 LFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L + +TD+G A+L++ L+ L + LT AG+ H+ L +L L+LSQ LTD
Sbjct: 236 LSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDA 295
Query: 463 TLELISGLTGLVSLNVSNSR-ITSAGLRHLKPL 494
L ++ LT L LN+ R +T AGL H K L
Sbjct: 296 GLAHLALLTALQYLNLERCRKLTDAGLAHFKTL 328
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 452
+ L L HL+L ++TD+G A+L++ L+ L + LTD G+ H+ L++L LN
Sbjct: 1 MRPLVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLN 60
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
LS LT L ++ L L +L++S ++T AGL HL PL L+ L + C+
Sbjct: 61 LSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCR 115
>gi|307108381|gb|EFN56621.1| hypothetical protein CHLNCDRAFT_57520 [Chlorella variabilis]
Length = 790
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 235/463 (50%), Gaps = 43/463 (9%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
V D ++ +A + L ++D++G + VTD +G L L L+ C ++D GLE
Sbjct: 338 VGDGVLEAVA-RCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLE 396
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMK 156
L L +L +L+ + +T +G+ +GL L L+L+ C + G L L L +
Sbjct: 397 LLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHR 456
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
L SL ++ C+ + D + L GLT+L+ L +S C ++T G+A L L + + + +
Sbjct: 457 LTSLCMRGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCS 516
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
+R L++L LT LNL GC TA SL ALG+L L QLS +GC
Sbjct: 517 GLRGAAALRPLSTLSSLTALNLGGC--TAIHGQSLRALGTLSALR----QLSLEGCR--- 567
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS 334
+ +L+ G + L L SLNL C + D GL + L L L LS
Sbjct: 568 ---GVVLLDAGLEALAPS-------LHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLS 617
Query: 335 D----TQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNL-DARQITD 388
+ T G++ R + L S+ L + G+ D L LAGL++L+SLNL +++ D
Sbjct: 618 ECPSITGAGAAAWR----MPLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCKRVGD 673
Query: 389 TGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDL 445
GLAA+ +L LT L L G + +TD+G A L ++L+ LE+ DAG+ + L
Sbjct: 674 GGLAAMAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAWQFGDAGIAALTRL 733
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 487
S+L+ L+L + +TD +L + +T L+SLNV R+T G
Sbjct: 734 SALSRLDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPGG 776
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 148/521 (28%), Positives = 205/521 (39%), Gaps = 125/521 (23%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
++Q L+ C Q+ D L + LS L +S R +T +G+ A L L +L L
Sbjct: 179 PSVQVLELGHCRQLQDWDLADVALLSTLRCVSLRGCEGVTDEGVAQLARLPRLSRLVLRN 238
Query: 141 CTRIHG-GLVNLKGLMKLE----------------------------------------- 158
C ++ GL L G+ E
Sbjct: 239 CVKLTDVGLARLAGVSGRELPQLWAPAGPGSPPPVPRLRSPGARLPAAAAPPPCRRPPLA 298
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYLKGLS----ISSVIFI 211
SL++ C +T+ + ++ CS+V+ G L+ ++ + ++
Sbjct: 299 SLDLAGCVLLTERGFAAAASGLAASLTELLLGGCSRVSTVGDGVLEAVARCRGLRALDMA 358
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
C+ + L+ LQ+L+ LNL+GC Y L+DDG
Sbjct: 359 GCTGVTDEGTGFTQLSRLQQLSELNLKGC-----------------Y------SLADDGL 395
Query: 272 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-----GIGDE-----GLV 320
E + SL LNL ++TD L HL GLT LE LNL C G G L
Sbjct: 396 ELLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALH 455
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
LT LC C L+D L L GLT+L ++LS G + + LA LSSL+ L
Sbjct: 456 RLTSLCMRGCDRLAD-----GALDFLPGLTSLRQLDLS--GCKELTADGLAPLSSLRLLA 508
Query: 381 LDARQITD-----TGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR--SLEICGG 432
Q L L++L+ LT L+L G I L LR SLE C G
Sbjct: 509 CLRLQHCSGLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRG 568
Query: 433 G-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLR 489
L DAG++ + L LT LNL LTD L+ + LTGLVSLN+S IT AG
Sbjct: 569 VVLLDAGLEALAPSLHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSITGAGAA 628
Query: 490 HLK-PL-----------------------KNLRSLTLESCK 506
+ PL LRSL L+ CK
Sbjct: 629 AWRMPLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCK 669
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 386 ITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAY--LRNFKNLRSLEICG-GGLTDAGVKH 441
+ D L A+ GL LD+ G +TD G + L + L L + G L D G++
Sbjct: 338 VGDGVLEAVARCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLEL 397
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG----LRHLKPLKNL 497
+ L SL LNL + +TD+ L +SGLT L LN+ R + G L L L L
Sbjct: 398 LPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRL 457
Query: 498 RSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
SL + C A+ LP L S R
Sbjct: 458 TSLCMRGCDRLADGALDF----LPGLTSLR 483
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCI 92
+ L L Q V D + +A L ++ L G S+VTD+G+ L +LQ L+ F
Sbjct: 661 RSLNLKQCKRVGDGGLAAMAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAW 720
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
Q D G+ L LS L+ L + IT +++ + +L+ L++ C R+ G
Sbjct: 721 QFGDAGIAALTRLSALSRLDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPG 775
>gi|46447141|ref|YP_008506.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400782|emb|CAF24231.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 623
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 174/373 (46%), Gaps = 58/373 (15%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK C NL+ L C ++D GL HL L L L +T G+
Sbjct: 275 NAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDCPRLTDAGLA 334
Query: 126 AFAGLINLVKLDLERCTRI--------------------------HGGLVNLKGLMKLES 159
L+ L L+L C+ H GL +L L+ L+
Sbjct: 335 HLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAHLTPLVALQH 394
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMII 217
LN+ C ITD+ + LS L L+ L + CS +TD+G+A+L L ++ + CS +
Sbjct: 395 LNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHLDLGWCSNLT 454
Query: 218 RLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 275
H LTSL L L+L C +T A L LS L +L +L+L+ C L D G +
Sbjct: 455 DAGLAH--LTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKDAGLAHLT 512
Query: 276 KIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+ +LK LNL + +TD L HL L L+ L+L C NLTG
Sbjct: 513 LLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCP-------NLTG---------- 555
Query: 335 DTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 392
+GL HL+ L L+ +++S+ ++D L L L +L+ LNL ++TD GLA
Sbjct: 556 ------TGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLA 609
Query: 393 ALTSLTGLTHLDL 405
L L L HLDL
Sbjct: 610 HLAPLVALEHLDL 622
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 192/380 (50%), Gaps = 35/380 (9%)
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCI 168
+L+F N +T + A NL L L++C + GL +L L+ L+ L + C +
Sbjct: 269 ALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDCPRL 328
Query: 169 TDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
TD+ + L+ L L+ L +S CS TD+G+A + + + +C +
Sbjct: 329 TDAGLAHLTSLVALQYLNLSECSNFTDAGLA-------HLTPLLTLTHLNLSWCYNF--- 378
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG 286
T A L L+ L +L +LNL C+ ++D G S + +L+ LNLG
Sbjct: 379 ---------------THAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLG 423
Query: 287 F-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 343
+ + +TD L HL L L+ L+L C + D GL +LT L L+ L+LS + +GL
Sbjct: 424 WCSNLTDAGLAHLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGL 483
Query: 344 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT 401
HLS L L+ ++LS + D L L L +LK LNL+ +TD GLA LT L L
Sbjct: 484 AHLSPLVALQHLDLSNCLSLKDAGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQ 543
Query: 402 HLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
HLDL +T +G A+L + L+ L++ LTDAG+ H+ L +L LNL++ L
Sbjct: 544 HLDLSQCPNLTGTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKL 603
Query: 460 TDKTLELISGLTGLVSLNVS 479
TD L ++ L L L++S
Sbjct: 604 TDAGLAHLAPLVALEHLDLS 623
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 181/362 (50%), Gaps = 37/362 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCS 214
++E+LN +TD+ + L NLK L + C +TD+G+++L L
Sbjct: 266 EVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPL----------- 314
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 272
+LQ L L CP +T A L L++L +L YLNL+ C +D G
Sbjct: 315 ------------VALQHL---ELSDCPRLTDAGLAHLTSLVALQYLNLSECSNFTDAGLA 359
Query: 273 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 330
+ + +L LNL + T L HL L L+ LNL C I D GL +L+ L L+
Sbjct: 360 HLTPLLTLTHLNLSWCYNFTHAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQH 419
Query: 331 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 387
L L + + +GL HLS L L+ ++L + + ++D L L L +L+ L+L +T
Sbjct: 420 LNLGWCSNLTDAGLAHLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLT 479
Query: 388 DTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 445
D GLA L+ L L HLDL + D+G A+L L+ L + LTDAG+ H+ L
Sbjct: 480 DAGLAHLSPLVALQHLDLSNCLSLKDAGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPL 539
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLES 504
+L L+LSQ NLT L ++ L L L++S +T AGL HL PL NLR L L
Sbjct: 540 VALQHLDLSQCPNLTGTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTK 599
Query: 505 CK 506
C
Sbjct: 600 CP 601
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 168/335 (50%), Gaps = 35/335 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L P + D + + S +L ++LS S+ TD+GL HL L L+ ++
Sbjct: 316 ALQHLELSDCPRLTDAGLAHLTSL-VALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSW 374
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C + GL HL L L L+ IT G+ + L+ L L+L C+ + GL
Sbjct: 375 CYNFTHAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLA 434
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSV 208
+L L+ L+ L++ WC+ +TD+ + L+ L L+ L +S C +TD+G+A+L
Sbjct: 435 HLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSP------ 488
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-L 266
L +LQ L+L C + A L L+ L +L YLNLN+C L
Sbjct: 489 -----------------LVALQH---LDLSNCLSLKDAGLAHLTLLVTLKYLNLNKCHNL 528
Query: 267 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
+D G + + +L+ L+L +T L HL L L+ L++ C + D GL +LT
Sbjct: 529 TDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTP 588
Query: 325 LCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
L NL+ L L+ ++ +GL HL+ L LE ++LS
Sbjct: 589 LVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDLS 623
>gi|290993170|ref|XP_002679206.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092822|gb|EFC46462.1| leucine rich repeat protein [Naegleria gruberi]
Length = 527
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 182/370 (49%), Gaps = 13/370 (3%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I D ++ +S L L L + + ++D G+ YL+ L + + I + + C ++
Sbjct: 133 IRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRELKQLTTLIIFSNRVGSEGC--KCIS 190
Query: 228 SLQKLTLL-------NLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
L++LT L N EG V + +S L L L ++ ++D+G + S++
Sbjct: 191 ELKQLTSLCIDDNHINDEGANNRVGSEGCKCISELKQLTSLCIDDNHINDEGAKYLSELA 250
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L L++ N + +E ++ L LE LN+ IGDEGL L L LELS+ ++
Sbjct: 251 QLTYLDISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKI 310
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G+ G ++LS L L +++ + I D L L +L ++ +I + G+ + L
Sbjct: 311 GTEGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELK 370
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L +LD+ RI + G Y+ K L + I + + G K+I LS LT L LS N N
Sbjct: 371 QLIYLDISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNN-N 429
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QS 517
+ ++ + IS L L+ L ++N++I + G +++ +K + L + + + IK + +
Sbjct: 430 IGNEGAKYISELKELIYLYMNNNKIRNEGAKYISEMKQVTQLDIGNNYIGEEGIKYISEM 489
Query: 518 RDLPNLVSFR 527
+ L +L ++
Sbjct: 490 KQLIHLEKYQ 499
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 147/314 (46%), Gaps = 40/314 (12%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ L++LT L ++ + + +S L L YL+++ +SDDG + ++ L L
Sbjct: 116 FISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRELKQLTTLI 175
Query: 285 LGFNEITDE---CLVHLKGLTNLESLNLDSCGIGDEGLVN---------------LTGLC 326
+ N + E C+ LK LT SL +D I DEG N LT LC
Sbjct: 176 IFSNRVGSEGCKCISELKQLT---SLCIDDNHINDEGANNRVGSEGCKCISELKQLTSLC 232
Query: 327 ------------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L L++S +G+ G +++S L LE +N+S I D L
Sbjct: 233 IDDNHINDEGAKYLSELAQLTYLDISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLE 292
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
LS L SL L +I G L+ L LT LD+ +I D GA Y K L +L
Sbjct: 293 YFGKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLI 352
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
I + + GVK+I +L L L++S+N + ++ ++ I L L +N+S +RI + G
Sbjct: 353 INNNRIGNDGVKYIGELKQLIYLDISEN-RIGNEGIKYIGELKQLTDVNISENRIGNEGA 411
Query: 489 RHLKPLKNLRSLTL 502
+++ L L SL L
Sbjct: 412 KYIGQLSQLTSLYL 425
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 190/402 (47%), Gaps = 20/402 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + S + D G+ ++ + L L + ISD G+++LR L LT+L
Sbjct: 118 SELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVH-SNDISDDGVKYLRELKQLTTLII 176
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N + ++G K + L L L C I +N +G + + C CI++
Sbjct: 177 F-SNRVGSEGCKCISELKQLTSL----C--IDDNHINDEGANN--RVGSEGCKCISE--- 224
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
L L SL I + + D G YL L+ + + I + + ++++L +L
Sbjct: 225 -----LKQLTSLCIDDNHINDEGAKYLSELAQLTYLDISSNGLGNEGT--KYISTLNQLE 277
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LN+ + L+ L L L L+ ++ +G + S++ L L++ +N+I D+
Sbjct: 278 KLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGAKYLSELKQLTQLDIEYNKIGDK 337
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
++ L L +L +++ IG++G+ + L L L++S+ ++G+ G++++ L L
Sbjct: 338 GAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQLIYLDISENRIGNEGIKYIGELKQLT 397
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+N+S I + + + LS L SL L I + G ++ L L +L + +I +
Sbjct: 398 DVNISENRIGNEGAKYIGQLSQLTSLYLSNNNIGNEGAKYISELKELIYLYMNNNKIRNE 457
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
GA Y+ K + L+I + + G+K+I ++ L L Q
Sbjct: 458 GAKYISEMKQVTQLDIGNNYIGEEGIKYISEMKQLIHLEKYQ 499
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
+GS + ++ L L L +DA I D G+ ++ L L +L + I+D G YLR K
Sbjct: 111 EGSAKFISELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVHSNDISDDGVKYLRELKQ 170
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL---------ELISGLTGLV 474
L +L I + G K I +L LT L + N ++ D+ + IS L L
Sbjct: 171 LTTLIIFSNRVGSEGCKCISELKQLTSLCIDDN-HINDEGANNRVGSEGCKCISELKQLT 229
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
SL + ++ I G ++L L L L + S
Sbjct: 230 SLCIDDNHINDEGAKYLSELAQLTYLDISS 259
>gi|46447554|ref|YP_008919.1| hypothetical protein pc1920 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401195|emb|CAF24644.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 517
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 140/244 (57%), Gaps = 14/244 (5%)
Query: 273 KFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 328
+FSK K+ L F+E +TD L+ LK NL+ L+L++C I D+GL +LT L L
Sbjct: 222 RFSK----KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTAL 277
Query: 329 KCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQ 385
+ L+LS ++ GL HL+ LT L+ ++LS ++D L LA L++L+ LNL D
Sbjct: 278 QHLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCEN 337
Query: 386 ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIK 443
+TD GL L+ L L HLDL + R+ +G A+L+ L+ L++ LTDAG+ H+K
Sbjct: 338 LTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLK 397
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L L LNL NLTD L ++ L L LN+S +T AGL HL PL L+ L L
Sbjct: 398 PLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDL 457
Query: 503 ESCK 506
C+
Sbjct: 458 SHCR 461
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 160/344 (46%), Gaps = 81/344 (23%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK C NL+ L C I+D GL HL L+ L
Sbjct: 238 LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQ------------------- 278
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL +C ++ G GL +L L L+ L++ C+ +TD+ + L+ LT L+ L +
Sbjct: 279 ------HLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNL 332
Query: 188 S-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAA 245
S C +TD+G+ V L+ L L L+L C + A
Sbjct: 333 SDCENLTDAGL--------------------------VHLSPLIALQHLDLSYCWRLNYA 366
Query: 246 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTN 303
L L L +L YL+L+ C L+D G + L+ LNL + E +TD L HL L
Sbjct: 367 GLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMA 426
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG 361
L+ LNL C + D GL +LT L L+ L+LS + + +GL HL+ LT L+ ++LS+
Sbjct: 427 LQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSY-- 484
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+ +TD GLA LT LTGL HLDL
Sbjct: 485 ---------------------CKNLTDAGLARLTPLTGLQHLDL 507
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 148/259 (57%), Gaps = 9/259 (3%)
Query: 230 QKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-G 286
+ L +L+LE C +T L L+ L +L +L+L++C +L+ G + + +L+ L+L G
Sbjct: 250 KNLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQCRKLTGIGLAHLTPLTALQHLDLSG 309
Query: 287 FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLR 344
+ +TD L HL LT L+ LNL C + D GLV+L+ L L+ L+LS ++ +GL
Sbjct: 310 CDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLA 369
Query: 345 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 402
HL LT L+ ++LS ++D L L L L+ LNL +TD GLA LT L L H
Sbjct: 370 HLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQH 429
Query: 403 LDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
L+L +TD+G +L L+ L++ LTDAG+ H+ L+ L L+LS NLT
Sbjct: 430 LNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLT 489
Query: 461 DKTLELISGLTGLVSLNVS 479
D L ++ LTGL L++S
Sbjct: 490 DAGLARLTPLTGLQHLDLS 508
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 159/310 (51%), Gaps = 36/310 (11%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
K+E+LN +TD+ + L NLK L + +C +TD G+A+L
Sbjct: 226 KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTP------------ 273
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 272
LT+LQ L+L C +T L L+ L +L +L+L+ C L+D G
Sbjct: 274 -----------LTALQH---LDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLA 319
Query: 273 KFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 330
+ + +L+ LNL E +TD LVHL L L+ L+L C + GL +L L L+
Sbjct: 320 HLAPLTALQHLNLSDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQY 379
Query: 331 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQIT 387
L+LS + +GL HL L L+ +NL + ++D L L L +L+ LNL + +T
Sbjct: 380 LDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLT 439
Query: 388 DTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 445
D GL LT LT L HLDL R +TD+G A+L + L+ L++ LTDAG+ + L
Sbjct: 440 DAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPL 499
Query: 446 SSLTLLNLSQ 455
+ L L+LS+
Sbjct: 500 TGLQHLDLSR 509
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 148/309 (47%), Gaps = 37/309 (11%)
Query: 11 FNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
F+E Y LT+ L A + C L+ L L + D + + + ++L +DLS
Sbjct: 232 FSENAY---LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHL-TPLTALQHLDLSQCRK 287
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T GL HL + LQ LD + C ++D GL HL L+ L L+ +T G+ +
Sbjct: 288 LTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLS 347
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL C R+ + GL +LK L L+ L++ C +TD+ + L L L+ L +
Sbjct: 348 PLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNL 407
Query: 188 S-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAA 245
C +TD+G+A+ LT L L LNL C +T A
Sbjct: 408 RYCENLTDAGLAH--------------------------LTPLMALQHLNLSECYHLTDA 441
Query: 246 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 303
L L+ L +L +L+L+ C+ L+D G + + L+ L+L + +TD L L LT
Sbjct: 442 GLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTG 501
Query: 304 LESLNLDSC 312
L+ L+L C
Sbjct: 502 LQHLDLSRC 510
>gi|290979790|ref|XP_002672616.1| predicted protein [Naegleria gruberi]
gi|284086194|gb|EFC39872.1| predicted protein [Naegleria gruberi]
Length = 559
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/420 (25%), Positives = 199/420 (47%), Gaps = 36/420 (8%)
Query: 54 SQGSSLLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
S+ L S+++SG+ + D G + +K + L D C++ G + + + LTS
Sbjct: 168 SEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVE----GAKSISEMKQLTS 223
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS +N I G K + + L L++ G + + +L SL+I N I
Sbjct: 224 LSIS-DNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS-NNLIDI 281
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
K +S + L SL+I +++ D G+ F++ ++
Sbjct: 282 EGAKSISEMKQLTSLEIYYNEIGDEGVK--------------------------FISKME 315
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+LT L++ G + S+S + L +L + ++ D+G S++ L LN+ +N+I
Sbjct: 316 QLTSLDISGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQI 375
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
DE + + + L SL++ IG G +++ + L L++ ++G G++ +S +
Sbjct: 376 GDEGVKFISEMEQLTSLDIGGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMK 435
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L S+N+S I D + ++ + L L + + +I D G+ ++ + LT L ++ RI
Sbjct: 436 QLTSLNISGNRIGDEGAKSISEMKQLTLLYISSNEIGDEGVKFISEMKQLTLLQIYSNRI 495
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
D G + K L SL I G + D GVK I ++ LT LN+S N + D+ ++L++ L
Sbjct: 496 GDEGVKSISEMKQLTSLNISGNRIGDEGVKSISEMKQLTSLNISNN-RIGDEGVKLLTSL 554
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 145/289 (50%), Gaps = 1/289 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LTLL++ + S+S + L LN++ ++ D+G + S++ L +LN
Sbjct: 142 FISEMKQLTLLDICCNEIGVEGATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLN 201
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I E + + L SL++ IG G ++ + L L +S+ ++G G +
Sbjct: 202 IADNRICVEGAKSISEMKQLTSLSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAK 261
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + L S+++S I + ++ + L SL + +I D G+ ++ + LT LD
Sbjct: 262 FISEMKQLISLDISNNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLD 321
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ G +I GA + K L L+I + D G I ++ LT LN+ N + D+ +
Sbjct: 322 ISGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGANSISEMKQLTSLNIYYN-QIGDEGV 380
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
+ IS + L SL++ ++I G + + +K L L + S ++ +K
Sbjct: 381 KFISEMEQLTSLDIGGNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGVK 429
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 143/312 (45%), Gaps = 34/312 (10%)
Query: 217 IRLFCLHVFLTSLQ--KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
I LF F+ S+ K ++ +L+ +S + L L + ++ D+G +
Sbjct: 91 IELFMKSQFMNSIANVKFSVYSLDNAKF-------ISEMKQLTSLGIAENRIGDEGVKFI 143
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-----------LVN-- 321
S++ L +L++ NEI E + + L SLN+ IGDEG L+N
Sbjct: 144 SEMKQLTLLDICCNEIGVEGATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIA 203
Query: 322 -----------LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
++ + L L +SD ++G G + +S + L +N+S I D + +
Sbjct: 204 DNRICVEGAKSISEMKQLTSLSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFI 263
Query: 371 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
+ + L SL++ I G +++ + LT L+++ I D G ++ + L SL+I
Sbjct: 264 SEMKQLISLDISNNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDIS 323
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
G + G K I ++ LT L + N + D+ IS + L SLN+ ++I G++
Sbjct: 324 GNQIGVGGAKSISEMKQLTFLQIFSN-RIGDEGANSISEMKQLTSLNIYYNQIGDEGVKF 382
Query: 491 LKPLKNLRSLTL 502
+ ++ L SL +
Sbjct: 383 ISEMEQLTSLDI 394
>gi|290996081|ref|XP_002680611.1| predicted protein [Naegleria gruberi]
gi|284094232|gb|EFC47867.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 152/297 (51%), Gaps = 7/297 (2%)
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
F F+T +++LT L++ + +S + L L+++ ++ D+G + S++
Sbjct: 116 FLEAKFITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQ 175
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L LN+ +N I+DE + + L SL++ IGDEG + + L L +S +
Sbjct: 176 LTSLNISYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSIS 235
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G + +S + L S+++ F IS + ++ + L SL++ +I D G+ L+ +
Sbjct: 236 DEGAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQ 295
Query: 400 LTHLDLFGARIT------DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
LT L + G IT + GA ++ K L SL+I ++D G K+I ++ LT LN+
Sbjct: 296 LTSLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNI 355
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
S N ++ + + IS + L SL++ ++RI G +++ +K L SL + + +N
Sbjct: 356 SYNS-ISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQFNSN 411
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 150/311 (48%), Gaps = 45/311 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+S + + D G ++ + L SLD + I+I D G +++ + LTSL+ NA
Sbjct: 128 LTSLDISENQIGDEGAKYISEMRQLTSLDIS-DIEIGDEGAKYISEMKQLTSLNISY-NA 185
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+ +G K + + L+ L + + G ++ + +L SLNI + N I+D K +S
Sbjct: 186 ISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISY-NSISDEGAKFISE 244
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-----------FLT 227
+ L SL I ++++ G ++ S + +L L + +L+
Sbjct: 245 MKQLTSLDIVFNEISGEGAKFI-------------SEMKQLTSLDISDNEIGDEGVKYLS 291
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+++LT L + G +T Y N Q+S++G + S++ L L++ +
Sbjct: 292 EMKQLTSLTISGNEIT--------------YCN----QISEEGAKFISEMKQLTSLDISY 333
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N I+DE ++ + L SLN+ I EG ++ + L L++ ++G G +++S
Sbjct: 334 NLISDEGAKYISEMKQLTSLNISYNSISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYIS 393
Query: 348 GLTNLESINLS 358
+ L S+N+S
Sbjct: 394 EMKQLTSLNIS 404
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 114/255 (44%), Gaps = 34/255 (13%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y ++D+ I S+ L+S+ + + + D G ++++ L SL+ ++ ISD G +
Sbjct: 183 YNAISDEGAKFI-SEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYN-SISDEGAK 240
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ + LTSL N I+ +G K + + L LD+ G+ L + +L SL
Sbjct: 241 FISEMKQLTSLDIVFN-EISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSL 299
Query: 161 -----NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
I +CN I++ K +S + L SL IS + ++D G Y
Sbjct: 300 TISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKY---------------- 343
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
++ +++LT LN+ ++ +S + L L++ ++ D+G + S
Sbjct: 344 ----------ISEMKQLTSLNISYNSISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYIS 393
Query: 276 KIGSLKVLNLGFNEI 290
++ L LN+ N+
Sbjct: 394 EMKQLTSLNISDNQF 408
>gi|290970865|ref|XP_002668286.1| predicted protein [Naegleria gruberi]
gi|284081599|gb|EFC35542.1| predicted protein [Naegleria gruberi]
Length = 368
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 191/408 (46%), Gaps = 54/408 (13%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI D + + + LTSL NN I +G+K+ + + LV
Sbjct: 13 QIGDKEAKFISEMKQLTSLDIY-NNRIGDEGVKSISEMKQLV------------------ 53
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
SLNI + N I D +K + + L SL I +++ D G+
Sbjct: 54 ------SLNI-YNNRIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVK-------------- 92
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
F++ +++LT LN+ + +S + L LN+ ++ D+G +
Sbjct: 93 ------------FISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIYNNRIGDEGVK 140
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
++ LK L++G N+I+ E + + L SLN+ + I DEG+ +++ + L L
Sbjct: 141 SIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRI-DEGVKSISEMKQLTSLN 199
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
+++ ++G + +S + L S+++ I D ++ + L SLN+ +I D G+
Sbjct: 200 IAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIYNNRIGDEGVK 259
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
++ + LT LD+ RI D G ++ K L SL+I + D GVK I ++ LT LN
Sbjct: 260 SIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKSISEMKQLTSLN 319
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+S+N + D+ + IS + L SL++ ++I G++ + +K L SL
Sbjct: 320 ISEN-RIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASL 366
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 191/395 (48%), Gaps = 32/395 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ +SG+ + D + + L SLD + +I D G++ + + L SL+ NN
Sbjct: 4 LTSLIISGNQIGDKEAKFISEMKQLTSLDI-YNNRIGDEGVKSISEMKQLVSLNIY-NNR 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G+K+ + L LD+ RI G+ + + +L SLNI N I D + +S
Sbjct: 62 IGDEGVKSIIEMKQLTSLDI-GGNRIGDEGVKFISEMKQLTSLNISE-NQIGDKEATFIS 119
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
+ L SL I +++ D G+ S+I +++L L++
Sbjct: 120 EMKQLTSLNIYNNRIGDEGVK--------SII------------------EMKQLKSLDI 153
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
++ +S + L LN+ ++ D+G + S++ L LN+ N I D+
Sbjct: 154 GRNQISVEGAKFISEMKQLVSLNIYNNRI-DEGVKSISEMKQLTSLNIAENRIGDKEAKF 212
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
+ + L SL++ + IGDEG + ++ + L L + + ++G G++ + + L S+++
Sbjct: 213 ISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDI 272
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
I D ++ ++ + L SL++ +I D G+ +++ + LT L++ RI D GA
Sbjct: 273 GRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKSISEMKQLTSLNISENRIGDEGAKS 332
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
+ K L+SL+I G + D GVK I ++ L LN
Sbjct: 333 ISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASLN 367
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 141/285 (49%), Gaps = 2/285 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT L + G + +S + L L++ ++ D+G + S++ L LN+ N
Sbjct: 1 MKQLTSLIISGNQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I DE + + + L SL++ IGDEG+ ++ + L L +S+ Q+G +S
Sbjct: 61 RIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISE 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ L S+N+ I D ++ + + LKSL++ QI+ G ++ + L L+++
Sbjct: 121 MKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNN 180
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
RI D G + K L SL I + D K I ++ LT L++ N + D+ IS
Sbjct: 181 RI-DEGVKSISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNN-RIGDEGAIFIS 238
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
+ L SLN+ N+RI G++ + +K L SL + ++ +K
Sbjct: 239 KMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVK 283
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 128/262 (48%), Gaps = 30/262 (11%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N+I D+ + + L SL++ + IGDEG+ +++ + L L + + ++G G++ +
Sbjct: 12 NQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNNRIGDEGVKSII 71
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+ L S+++ I D ++ ++ + L SLN+ QI D ++ + LT L+++
Sbjct: 72 EMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIYN 131
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLT-----------------------DAGVKHIKD 444
RI D G + K L+SL+I ++ D GVK I +
Sbjct: 132 NRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEGVKSISE 191
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ LT LN+++N + DK + IS + L SL++ N+RI G + +K L SL + +
Sbjct: 192 MKQLTSLNIAEN-RIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIYN 250
Query: 505 CKVTAN------DIKRLQSRDL 520
++ ++KRL S D+
Sbjct: 251 NRIGDEGVKSIIEMKRLTSLDI 272
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ DK I S+ L S+D+ + + D G I + L SL+ + +I D G++ +
Sbjct: 205 IGDKEAKFI-SEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNI-YNNRIGDEGVKSII 262
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+ LTSL R N I +G+K + + L LD+ G+ ++ + +L SLNI
Sbjct: 263 EMKRLTSLDIGR-NRIGDEGVKFISEMKQLASLDISENRIGDEGVKSISEMKQLTSLNIS 321
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
N I D K +S + LKSL I +++ D G+ ++
Sbjct: 322 E-NRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFI 357
>gi|149175887|ref|ZP_01854505.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845334|gb|EDL59679.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 360
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 1/227 (0%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
LS+ G + LK L L ++D+ LVHLK L+ L L+L + GL +L GL
Sbjct: 124 LSNTGLVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGL 183
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
NL L L T V ++GL+ ++ + L +NL+ T ISD L L L L L L+ Q
Sbjct: 184 TNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQ 243
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
+T TGL+ L+SL L L L G+ I DS ++L++FK L LE+ ++DAG+ H+ L
Sbjct: 244 VTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGL 303
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
L LNLS +TD L + GL L ++ + N+++TS GL K
Sbjct: 304 PLLDALNLS-GTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRK 349
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 135/265 (50%), Gaps = 5/265 (1%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
+K ++ES+++ + DSD+ L+ NL+ + +S ++++G+ +LK +
Sbjct: 85 QMKSFDEVESISL---DVTQDSDLVWLNDFPNLERISLSGKGLSNTGLVHLKRFHRLKRL 141
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
+ + + +H L L +L L+L PV+ + L L L +L +LNL +++
Sbjct: 142 MLWNTSVSDDGLVH--LKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQGTAVTNA 199
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G ++ + +L+VLNL I+D LVHL+ L L L L+ + GL L+ L L
Sbjct: 200 GLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLY 259
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
CL+L+ + + S + HL L + L T ISD L L+GL L +LNL Q+TD
Sbjct: 260 CLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDA 319
Query: 390 GLAALTSLTGLTHLDLFGARITDSG 414
GL L L L ++ L ++T G
Sbjct: 320 GLVYLQGLPRLKNVYLKNTQVTSEG 344
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 138/271 (50%), Gaps = 31/271 (11%)
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
+V ++ + D LV L NLE ++L G+ + GLV+L LK L L +T V
Sbjct: 91 EVESISLDVTQDSDLVWLNDFPNLERISLSGKGLSNTGLVHLKRFHRLKRLMLWNTSVSD 150
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
GL HL L+ L ++L +T +S L L GL++L LNL +T+ GL + + L
Sbjct: 151 DGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQGTAVTNAGLKQVNCFSAL 210
Query: 401 THLDLFGARITDSGAAYLRNFK-----NLRSLEICGGGLT-------------------D 436
L+L I+D+G +LR+ L ++ G GL+ D
Sbjct: 211 RVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLNGSLIND 270
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
+ + H+K +L L L Q+ ++D L +SGL L +LN+S +++T AGL +L+ L
Sbjct: 271 SSMSHLKSFKTLIRLEL-QDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPR 329
Query: 497 LRSLTLESCKVTANDIKR-----LQSRD-LP 521
L+++ L++ +VT+ +++ QSRD LP
Sbjct: 330 LKNVYLKNTQVTSEGLEQRKLILQQSRDPLP 360
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 129/284 (45%), Gaps = 53/284 (18%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ LSG ++++GL+HLK L+ L + +SD GL HL+ LS L
Sbjct: 117 ISLSGKGLSNTGLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLN------------ 163
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
LDL GL +L+GL L LN++ +T++ +K ++ +
Sbjct: 164 -------------HLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSA 209
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L+ L ++ + ++D+G+ +L+ L +L +L LE
Sbjct: 210 LRVLNLNQTSISDAGLVHLRDLP--------------------------QLIILQLEQTQ 243
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
VT L LS+L L+ L LN ++D +L L L +I+D LVHL GL
Sbjct: 244 VTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGL 303
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
L++LNL + D GLV L GL LK + L +TQV S GL
Sbjct: 304 PLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQ 347
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++L+ + ++D+GL+HL+D L L Q++ GL L L L L
Sbjct: 208 SALRVLNLNQTSISDAGLVHLRDLPQLIILQLE-QTQVTGTGLSELSSLPKLYCLKL-NG 265
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I M L++L+L+ GLV+L GL L++LN+ +TD+ + L
Sbjct: 266 SLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLS-GTQVTDAGLVYL 324
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
GL LK++ + ++VT G+ K
Sbjct: 325 QGLPRLKNVYLKNTQVTSEGLEQRK 349
>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 219/477 (45%), Gaps = 94/477 (19%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NLV L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
L L++ C +TD+ +K L + NLK L IS + VT GI+
Sbjct: 113 LTELDLSRCFKVTDAGIKHLQSVVNLKKLWISQTGVTKVGIS------------------ 154
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
L SLQKL+LL+L G PVT L +L L L YL++ +++ G
Sbjct: 155 --------LLASLQKLSLLDLGGLPVTDHNLIALQELTKLEYLDIWGSNVTNQGA----- 201
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-- 334
I L+ NL F ++ + + +LE L+++ C I E + + L +LK L LS
Sbjct: 202 ISILQFSNLSFLNLSWTSVTQTPNIPHLECLHMNMCTIVSEPKTHCS-LASLKKLVLSGA 260
Query: 335 ----DTQ--------------VGSSGLRHLS---GLTNLESINLSFTGISDGSLRKLAGL 373
+T+ V + L++ S + NLE ++LS T D S+ +A +
Sbjct: 261 NFSAETEALSFTNKSSITYLDVSKTSLQNFSFIETMINLEHLDLSSTAFGDDSVGFVACV 320
Query: 374 -SSLKSLNLDARQITDTGLAAL--------------------------TSLTGLTHLDLF 406
+LK+LN+ +IT G+ L T + + LDL
Sbjct: 321 GENLKNLNVSDTKITSAGVGNLAGHVPQLETFSLSQTFVDDLSILLISTMMPCVKALDLG 380
Query: 407 GARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
I + A A L++ +L++L + L D + + L+ LT L+L ++ +LTD
Sbjct: 381 MTSIREEQAEPSLAALQSLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSL-RSTSLTDS 439
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 518
TL +S L LVSL V ++ +TS GL +P K LR+L L+ C +T +DI L R
Sbjct: 440 TLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLCKR 496
>gi|46446916|ref|YP_008281.1| hypothetical protein pc1282 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400557|emb|CAF24006.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1082
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 164/345 (47%), Gaps = 58/345 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL++L C ++D GL HL
Sbjct: 781 LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHL-------------------------T 815
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C+ GL +L+ L+ L LN++WC +TD+ + L+ L LK L +
Sbjct: 816 SLVTLQHLDLSYCSNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDL 875
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA 244
S CS TD+G+ +L L ++ + CS H L L LT LNL C T
Sbjct: 876 SYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAH--LRPLVALTHLNLRWCHNFTD 933
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
A L L+ L +L +LNLN C ++TD L HL+ L L
Sbjct: 934 AGLAHLTPLVALQHLNLNLCW-----------------------KLTDAGLAHLRPLVAL 970
Query: 305 ESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TG 361
++L+L C D GL +LT L L+ L+LS ++ +GL HL+ L L+ ++LS+
Sbjct: 971 QNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNH 1030
Query: 362 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 405
++D LR L L +L+ L L + T+ GLA S HL+L
Sbjct: 1031 LTDAGLRHLTPLLALQDLYLYSCENFTEVGLAHFKSSVASLHLNL 1075
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 149/274 (54%), Gaps = 9/274 (3%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 299
+T A L +L +L L+L C L+D G + + +L+ L+L + + TD L HL+
Sbjct: 781 LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLR 840
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L L LNL C + D GL +LT L LK L+LS + +GL HL+ L L+ ++L
Sbjct: 841 PLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDL 900
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 414
S + +D L L L +L LNL TD GLA LT L L HL+L ++TD+G
Sbjct: 901 SCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAG 960
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A+LR L++L++ TDAG+ H+ L L L+LS LTD L ++ L L
Sbjct: 961 LAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVAL 1020
Query: 474 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
L++S + +T AGLRHL PL L+ L L SC+
Sbjct: 1021 QHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 129/245 (52%), Gaps = 10/245 (4%)
Query: 272 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 327
EK K S ++ L F++ +TD L+ LK NL++L+L C + D GL +LT L
Sbjct: 760 EKVLKYFSNEIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVT 819
Query: 328 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 384
L+ L+LS + +GL HL L L +NL + ++D L L L +LK L+L
Sbjct: 820 LQHLDLSYCSNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCS 879
Query: 385 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 442
TD GL LT L L HLDL + TD+G A+LR L L + TDAG+ H+
Sbjct: 880 NFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHL 939
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 501
L +L LNL+ LTD L + L L +L++S S T AGL HL PL L+ L
Sbjct: 940 TPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLD 999
Query: 502 LESCK 506
L SCK
Sbjct: 1000 LSSCK 1004
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 153/316 (48%), Gaps = 36/316 (11%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
++E LN +TD+ + L NLK+L + C +TD+G+A+L
Sbjct: 769 EIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHL-------------- 814
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
TSL L L+L C T A L L L +L +LNL C+ L+D G
Sbjct: 815 ------------TSLVTLQHLDLSYCSNFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLA 862
Query: 273 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 330
+ + +LK L+L + + TD L HL L L+ L+L C D GL +L L L
Sbjct: 863 HLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTH 922
Query: 331 LELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 387
L L +GL HL+ L L+ +NL+ ++D L L L +L++L+L T
Sbjct: 923 LNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFT 982
Query: 388 DTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 445
D GLA LT L L HLDL ++TD+G A+L L+ L++ LTDAG++H+ L
Sbjct: 983 DAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPL 1042
Query: 446 SSLTLLNLSQNCNLTD 461
+L L L N T+
Sbjct: 1043 LALQDLYLYSCENFTE 1058
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 36/309 (11%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
EL +S+ LT+ L A ++C L+ L L + P + D + + S +L +DLS S+
Sbjct: 772 ELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTS-LVTLQHLDLSYCSN 830
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+GL HL+ L L+ +C ++D GL HL L L L + T G+
Sbjct: 831 FTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLT 890
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C+ GL +L+ L+ L LN++WC+ TD+ + L+ L L+ L +
Sbjct: 891 PLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNL 950
Query: 188 S-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAA 245
+ C K+TD+G+A+L+ L +LQ L+L C T A
Sbjct: 951 NLCWKLTDAGLAHLRP-----------------------LVALQN---LDLSYCSNFTDA 984
Query: 246 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTN 303
L L+ L L +L+L+ C +L+D G + + +L+ L+L + N +TD L HL L
Sbjct: 985 GLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLA 1044
Query: 304 LESLNLDSC 312
L+ L L SC
Sbjct: 1045 LQDLYLYSC 1053
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 59 LLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +DLS +TD+GL HL LQ LD ++C ++D GL HL L L L
Sbjct: 995 LQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH 145
T G+ F + + L+L+ C R
Sbjct: 1055 NFTEVGLAHFKSSVASLHLNLKWCKRFQ 1082
>gi|168699408|ref|ZP_02731685.1| hypothetical protein GobsU_07802 [Gemmata obscuriglobus UQM 2246]
Length = 320
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 141/279 (50%), Gaps = 26/279 (9%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N +TD+ MK L+ L NL SL++ VTD+G+ L
Sbjct: 59 NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKAL------------------------- 93
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L+KLT L L VT A + L++L SL L+L ++D G ++ + + L L+L
Sbjct: 94 -APLKKLTTLQLTAAKVTDAGVKELASLASLTTLDLASTNVTDAGVKELAPLTRLTALDL 152
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
++TD L L L NL +L+L S + L L L NLK L L DT++ +GL+
Sbjct: 153 SGTKVTDAGLKELAPLKNLVTLSLGSTAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKE 212
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+ LT+L ++ L+ T ++D L+ L L +L LNL ++T GL L +L LT LDL
Sbjct: 213 LAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDL 272
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+TD+G L NL+ L + G +T GVK KD
Sbjct: 273 DVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFKD 311
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 148/287 (51%), Gaps = 25/287 (8%)
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ +T + + G +T A + L+AL +L L L ++D G + + + L L L +
Sbjct: 49 RPVTAVGMVGNKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAK 108
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+TD + L L +L +L+L S + D G+ L L L L+LS T+V +GL+ L+ L
Sbjct: 109 VTDAGVKELASLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPL 168
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
NL +++L T ++ SL++LA L++LK+L+L ++TD GL L LT LT L L +
Sbjct: 169 KNLVTLSLGSTAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATK 228
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
+TD+G L KNL L + G +T AG+K + L +LT+L+L
Sbjct: 229 VTDAGLKGLTPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTA------------ 276
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
+T AGL+ L PL NL+ L L KVT +K +
Sbjct: 277 -------------VTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 131/228 (57%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L+ LT L L G VT A L +L+ L L L L +++D G ++ + + SL L+L
Sbjct: 69 LAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELASLASLTTLDL 128
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+TD + L LT L +L+L + D GL L L NL L L T V + L+
Sbjct: 129 ASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGSTAVTGASLKE 188
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+ LTNL++++L T ++D L++LA L+SL +L L A ++TD GL LT L L+ L+L
Sbjct: 189 LAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNL 248
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
G ++T +G L KNL L++ +TDAG+K + L++L +L L
Sbjct: 249 GGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 1/202 (0%)
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
D G+ L L NL L+L V +GL+ L+ L L ++ L+ ++D +++LA L+S
Sbjct: 63 DAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELASLAS 122
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
L +L+L + +TD G+ L LT LT LDL G ++TD+G L KNL +L + +T
Sbjct: 123 LTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGSTAVT 182
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
A +K + L++L L+L + +TD L+ ++ LT L +L ++ +++T AGL+ L PLK
Sbjct: 183 GASLKELAPLTNLKTLHL-YDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLK 241
Query: 496 NLRSLTLESCKVTANDIKRLQS 517
NL L L KVT+ +K L +
Sbjct: 242 NLSDLNLGGTKVTSAGLKELAA 263
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 3/240 (1%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N++TD + L L NL SL L + D GL L L L L+L+ +V +G++ L+
Sbjct: 59 NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L +L +++L+ T ++D +++LA L+ L +L+L ++TD GL L L L L L
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+T + L NL++L + +TDAG+K + + +TD L+ +
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELA-PLTSLTTLTLAATKVTDAGLKGL 237
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
+ L L LN+ +++TSAGL+ L LKNL L L+ VT +K L L NL R
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTP--LTNLKVLR 295
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 127/265 (47%), Gaps = 28/265 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G++ L L NLTSL +T G+KA A L L L L G+ L
Sbjct: 60 KMTDAGMKELAALRNLTSLKL-IGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
L L +L++ N +TD+ +K L+ LT L +L +S +KVTD+G+
Sbjct: 119 SLASLTTLDLASTN-VTDAGVKELAPLTRLTALDLSGTKVTDAGLKE------------- 164
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
L L+ L L+L VT A L L+ L +L L+L +++D G +
Sbjct: 165 -------------LAPLKNLVTLSLGSTAVTGASLKELAPLTNLKTLHLYDTKMTDAGLK 211
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+ + + SL L L ++TD L L L NL LNL + GL L L NL L+
Sbjct: 212 ELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLD 271
Query: 333 LSDTQVGSSGLRHLSGLTNLESINL 357
L T V +GL+ L+ LTNL+ + L
Sbjct: 272 LDVTAVTDAGLKELTPLTNLKVLRL 296
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 5/241 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+GL L L +L +++D G++ L L++LT+L N
Sbjct: 75 LTSLKLIGPVVTDAGLKALAPLKKLTTLQLT-AAKVTDAGVKELASLASLTTLDLASTN- 132
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G+K A L L LDL GL L L L +L++ +T + +K L+
Sbjct: 133 VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSL-GSTAVTGASLKELAP 191
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
LTNLK+L + +K+TD+G+ L L+ + + + + + LT L+ L+ LNL
Sbjct: 192 LTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKG--LTPLKNLSDLNLG 249
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
G VT+A L L+AL +L L+L+ ++D G ++ + + +LKVL L ++T + +
Sbjct: 250 GTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEF 309
Query: 299 K 299
K
Sbjct: 310 K 310
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 30/231 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D + +AS +SL ++DL+ ++VTD+G+ L + L +LD + +++D GL+ L
Sbjct: 109 VTDAGVKELASL-ASLTTLDLASTNVTDAGVKELAPLTRLTALDLS-GTKVTDAGLKELA 166
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L NL +LS + A+T +K A L NL L L GL L L L +L +
Sbjct: 167 PLKNLVTLSL-GSTAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLA 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+TD+ +K L+ L NL L + +KVT +G+
Sbjct: 226 ATK-VTDAGLKGLTPLKNLSDLNLGGTKVTSAGLKE------------------------ 260
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
L +L+ LT+L+L+ VT A L L+ L +L L L +++ G ++F
Sbjct: 261 --LAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEF 309
>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]
Length = 588
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 142/532 (26%), Positives = 238/532 (44%), Gaps = 92/532 (17%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL GGL +TD + L LT
Sbjct: 157 ADGINLVSSLTNLSVLDL-------GGLP------------------VTDLVLSSLQVLT 191
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
L+ L + SK+++ G A L V+F S + + L L + LN+ C
Sbjct: 192 KLQYLDLWGSKISNKGAADL-------VVFPKLSFLNIAWTDVTTLPDLPSIACLNMSNC 244
Query: 241 PV--------TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+ A L+ ++ G+ F LN++ L F + L L++ + +
Sbjct: 245 TIHSMFEGEGAKALLEKITVSGATF-LNVSEAFL-------FIETSFLSFLDVSRSSLNS 296
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LT 350
C L + LE L+L +GD+ + + + NL+ L LS+T+V S+G+ L+G +
Sbjct: 297 FCF--LSCMKALEHLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVP 354
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-----------DARQITDTGLAALTSLTG 399
NLE+I+LS T + D ++ ++ +SS+K +NL D+ + + LAAL SL
Sbjct: 355 NLETISLSHTPVDDVAISYISMMSSVKIINLSNTNVKGLIWSDSELVWELSLAALHSLNY 414
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
+ LDL G ++ D L F+ L L + G LTD L+L Q
Sbjct: 415 VKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTRLTD--------------LSLYQ---- 456
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+S L L++L++ ++ +T+ GL KP L+ L L C + D
Sbjct: 457 -------LSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTED 501
>gi|290984426|ref|XP_002674928.1| predicted protein [Naegleria gruberi]
gi|284088521|gb|EFC42184.1| predicted protein [Naegleria gruberi]
Length = 612
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/461 (24%), Positives = 203/461 (44%), Gaps = 50/461 (10%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + + ++ L SL+ + I D +E + L LTSL + N I ++G+K
Sbjct: 95 GVKIDSESVTYIGQLKQLTSLEIQ-GMDIDDEHVESMAELKQLTSL-YISGNYIGSEGVK 152
Query: 126 AFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ N L KL++ + G + L +L SL I + I D+ + LSGL +L +
Sbjct: 153 IISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTN 212
Query: 185 LQISCSKVTDSGIAYLKGL-----------SISSVIFILCSMIIRLFCLHV--------- 224
L IS K+ G Y+ SI + S + +L LH+
Sbjct: 213 LDISRIKIGSGGAQYIGKFEQLTCLNINTCSIDDKVLQSISQLKKLIVLHISENEISIEG 272
Query: 225 --FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
+++ L +LT L + + + +S L L YL++ + + ++G + + L
Sbjct: 273 AKYISKLNQLTSLYISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTT 332
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L + N + ++ ++ +T L L++ I +G+ ++ L L L + ++ G
Sbjct: 333 LLVSENYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSILESHFDGEG 392
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
L ++S L NL +N ++ + ++ ++ L+ L LN+ +I+D G ++ L L
Sbjct: 393 LEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYISELKQLKE 452
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L + I+ GA YL + KNL L I G L + G HI +L LT+L++S N
Sbjct: 453 LSISDNSISSEGANYLTDLKNLTKLVITGNNLGNDGAMHISELKKLTILDISHNS----- 507
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
I+S G +HL LKNL L ++
Sbjct: 508 --------------------ISSEGAKHLSDLKNLTELVIK 528
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 191/424 (45%), Gaps = 28/424 (6%)
Query: 54 SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
SQ L S++++ +D + D+G+I+L +L +LD + I+I GG +++ LT L+
Sbjct: 180 SQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTNLDISR-IKIGSGGAQYIGKFEQLTCLN 238
Query: 113 FR-----------------------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
N I+ +G K + L L L +
Sbjct: 239 INTCSIDDKVLQSISQLKKLIVLHISENEISIEGAKYISKLNQLTSLYISESGIRSEQAR 298
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
+ L +L L++ N + + K + + L +L +S + V + G Y+ ++ + +
Sbjct: 299 YISELKQLTYLDVTK-NYVREEGAKYIRNMKKLTTLLVSENYVCEQGAEYISEMTQLTKL 357
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
I + I + H+ L++LT L++ L+ +S L +L LN ++
Sbjct: 358 DISVNNINKKGVFHI--CKLKQLTELSILESHFDGEGLEYISELKNLTILNFPYSEMRGV 415
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + S++ L LN+ +N I+DE ++ L L+ L++ I EG LT L NL
Sbjct: 416 GVKYISQLNQLTCLNIPYNRISDEGAKYISELKQLKELSISDNSISSEGANYLTDLKNLT 475
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L ++ +G+ G H+S L L +++S IS + L+ L +L L + + +
Sbjct: 476 KLVITGNNLGNDGAMHISELKKLTILDISHNSISSEGAKHLSDLKNLTELVIKGNNLGND 535
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G +++ L LTHLD+ I+D G + L L I ++ GV+ I+ ++ T
Sbjct: 536 GAMSISELKQLTHLDVCDNNISDEGFKAISKMNQLTRLSIYENSISGEGVEFIRKMTQST 595
Query: 450 LLNL 453
+++
Sbjct: 596 FIDI 599
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 30/236 (12%)
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+I E + ++ L L SL + I DE + ++ L L L +S +GS G++ +S
Sbjct: 97 KIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIIS- 155
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-G 407
ES N L LN+ A I + G ++ L LT L++
Sbjct: 156 ----ESFN------------------KLTKLNISANYIDNVGAKYISQLKQLTSLEIACN 193
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
I D+G YL ++L +L+I + G ++I LT LN++ C++ DK L+ I
Sbjct: 194 DSIGDAGIIYLSGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNIN-TCSIDDKVLQSI 252
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
S L L+ L++S + I+ G +++ L L SL ++ + I+ Q+R + L
Sbjct: 253 SQLKKLIVLHISENEISIEGAKYISKLNQLTSLY-----ISESGIRSEQARYISEL 303
>gi|406830574|ref|ZP_11090168.1| hypothetical protein SpalD1_03019 [Schlesneria paludicola DSM
18645]
Length = 404
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 5/300 (1%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
TD+D+ L L+SL +S ++++ GIA L L S + L ++ ++ L
Sbjct: 64 TDADVTLLKTFPELESLDLSGTQISGKGIAELSVLR-SLTVLHLANLPVKNAQFKK-LIE 121
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L LT L++ V+ A L A +L L L+ ++++ G SK G L +L+L
Sbjct: 122 LDSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQT 181
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
++DE + LK L NL L L I D GL + GL +LK L+L+ TQ+ +GL+HL G
Sbjct: 182 RVSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRG 241
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L NL + L + D + L + +L +L+ A QITD L+AL + LT LDL
Sbjct: 242 LNNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKN 301
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
I+D G L +NL+ + + +T +G+K +D L+ N TD+ +E S
Sbjct: 302 PISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQDAIGTPLI---ITWNGTDQDIEAAS 358
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 138/274 (50%), Gaps = 1/274 (0%)
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 302
T A + L L L+L+ Q+S G + S + SL VL+L + + L L
Sbjct: 64 TDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLIELD 123
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
+L +L++ + D L NL L LS ++ ++GL LS L ++L+ T +
Sbjct: 124 SLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRV 183
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
SD + L L +L L L ITDTGL A+ L+ L LDL +ITD+G +LR
Sbjct: 184 SDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLN 243
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
NL L++ + D GV + ++ +L L+ +TD+ L + + L +L++ +
Sbjct: 244 NLNELKLGRNQVKDNGVNALVEIPTLIALDFYA-TQITDECLSALGQIANLTTLDLGKNP 302
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
I+ GLR+L L+NL+ + L VTA+ +KR Q
Sbjct: 303 ISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQ 336
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 3/217 (1%)
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
D+ D + L L+ L+LS TQ+ G+ LS L +L ++L+ + + +K
Sbjct: 59 DAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK 118
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L L SL +L++ Q++D L + LT L L G RIT++G L F L L++
Sbjct: 119 LIELDSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDL 178
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
++D G+ +K L +LT L LS N +TD LE I GL+ L L+++ ++IT AGL+
Sbjct: 179 TQTRVSDEGMTALKRLENLTELRLSGNV-ITDTGLEAIGGLSHLKILDLTATQITDAGLK 237
Query: 490 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
HL+ L NL L L +V N + L ++P L++
Sbjct: 238 HLRGLNNLNELKLGRNQVKDNGVNALV--EIPTLIAL 272
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 127/290 (43%), Gaps = 53/290 (18%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL + L+ V ++ L + +L +LD Q+SD L+ NLT+L N
Sbjct: 100 SLTVLHLANLPVKNAQFKKLIELDSLTTLDVADT-QVSDAALQGSIAHPNLTTLVLS-GN 157
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
IT G+ + L LDL + G+ LK L L L + N ITD+ ++ +
Sbjct: 158 RITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLS-GNVITDTGLEAIG 216
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
GL++LK L ++ +++TD+G+ +L+GL+
Sbjct: 217 GLSHLKILDLTATQITDAGLKHLRGLN--------------------------------- 243
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+L L L R Q+ D+G +I +L L+ +ITDECL
Sbjct: 244 -----------------NLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSA 286
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
L + NL +L+L I D GL NLT L NLK + L + V +SGL+
Sbjct: 287 LGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQ 336
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L + LSG+ +TD+GL + S+L+ LD QI+D GL+HLRGL+NL L RN
Sbjct: 195 ENLTELRLSGNVITDTGLEAIGGLSHLKILDLT-ATQITDAGLKHLRGLNNLNELKLGRN 253
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ G+ A + L+ LD L L + L +L++ N I+D ++ L
Sbjct: 254 Q-VKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLG-KNPISDFGLRNL 311
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
+ L NLK + + + VT SG+ +
Sbjct: 312 TRLRNLKEIGLVEAPVTASGLKRFQ 336
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 3/146 (2%)
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
DA++ TD + L + L LDL G +I+ G A L ++L L + + +A K
Sbjct: 59 DAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK 118
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+ +L SLT L+++ + ++D L+ L +L +S +RIT+AGL L L L
Sbjct: 119 LIELDSLTTLDVA-DTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILD 177
Query: 502 LESCKVTANDIKRLQSRDLPNLVSFR 527
L +V+ + L+ L NL R
Sbjct: 178 LTQTRVSDEGMTALKR--LENLTELR 201
>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]
Length = 598
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 142/532 (26%), Positives = 238/532 (44%), Gaps = 92/532 (17%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL GGL +TD + L LT
Sbjct: 157 ADGINLVSSLTNLSVLDL-------GGLP------------------VTDLVLSSLQVLT 191
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
L+ L + SK+++ G A L V+F S + + L L + LN+ C
Sbjct: 192 KLQYLDLWGSKISNKGAADL-------VVFPKLSFLNIAWTDVTTLPDLPSIACLNMSNC 244
Query: 241 PV--------TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+ A L+ ++ G+ F LN++ L F + L L++ + +
Sbjct: 245 TIHSMFEGEGAKALLEKITVSGATF-LNVSEAFL-------FIETSFLSFLDVSRSSLNS 296
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LT 350
C L + LE L+L +GD+ + + + NL+ L LS+T+V S+G+ L+G +
Sbjct: 297 FCF--LSCMKALEHLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVP 354
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-----------DARQITDTGLAALTSLTG 399
NLE+I+LS T + D ++ ++ +SS+K +NL D+ + + LAAL SL
Sbjct: 355 NLETISLSHTPVDDVAISYISMMSSVKIINLSNTNVKGLIWSDSELVWELSLAALHSLNY 414
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
+ LDL G ++ D L F+ L L + G LTD L+L Q
Sbjct: 415 VKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTRLTD--------------LSLYQ---- 456
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+S L L++L++ ++ +T+ GL KP L+ L L C + D
Sbjct: 457 -------LSSLPNLINLSIGDTVLTNGGLNSFKPPATLKLLDLRGCWLLTED 501
>gi|32477504|ref|NP_870498.1| adenylate cyclase regulatory protein [Rhodopirellula baltica SH 1]
gi|32448058|emb|CAD77575.1| conserved hypothetical protein-putative adenylate cyclase
regulatory protein [Rhodopirellula baltica SH 1]
Length = 513
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 158/324 (48%), Gaps = 11/324 (3%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 176 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 231
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 232 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 289
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
+N +C I MK L L++LQ SK+ D +A LKGLS + I +
Sbjct: 290 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGE 349
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIG 278
H+ + L L V L +S L ++ +++++ C+L S +G + K+
Sbjct: 350 GIQHI--AGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLT 407
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+
Sbjct: 408 GLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQL 467
Query: 339 GSSGLRHLSGLTNLESINLSFTGI 362
G L+ L NL+S+N++ T I
Sbjct: 468 GDDSFLELAKLPNLKSMNVANTSI 491
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 183/422 (43%), Gaps = 65/422 (15%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I K D N+ F I GG+E HLRG+ N T +F I G
Sbjct: 128 LTEAGYILTKNDDGNV----VEFSIANQKGGIEESLQHLRGIPNTTEATFN-GPGIDDAG 182
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 183 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 217
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
+L + + VTD G+ L GLS KL ++L +
Sbjct: 218 ALFLRRTGVTDEGLELLTGLS--------------------------KLRAIDLRNTNIG 251
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 302
A +DSL+ + +L + L + +++D+G K + + LK +N + I + L
Sbjct: 252 DAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTP 310
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
LE+L D I DE + L GL LK L + V G++H++G L L + +
Sbjct: 311 TLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSV 370
Query: 363 SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
D L+ ++ L ++ +++ + R + G+A L LTGLT+L L+ + D A +
Sbjct: 371 DDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDL 430
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
NL L + +TD + + ++ L LN++ L D + ++ L L S+NV+N+
Sbjct: 431 VNLEELNLKSTAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANT 489
Query: 482 RI 483
I
Sbjct: 490 SI 491
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 132/288 (45%), Gaps = 28/288 (9%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L L + + N + D G E + +LK L L ITD+ L + +T+L++
Sbjct: 159 LQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLDA 218
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L L G+ DEGL LTGL L+ ++L +T +G +G+ L+ + L + L + ++D
Sbjct: 219 LFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDEG 278
Query: 367 LRKLAGLSSLKSLNL-------------------------DARQITDTGLAALTSLTGLT 401
L KLA L LKS+N D +I D +A L L+ L
Sbjct: 279 LVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLK 337
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL-T 460
L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C L +
Sbjct: 338 RLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISE-CRLAS 396
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ + + LTGL L + ++ L L NL L L+S VT
Sbjct: 397 PEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 444
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 25/244 (10%)
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+E L HL+G+ N + GI D G+ NL L NLK L L+DT + L+ + +T+
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L+++ L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 216 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 275
Query: 412 DSGAAYLR-------NFK-----NLRSLEICGGGLT------------DAGVKHIKDLSS 447
D G L NF N ++++ G T D + +K LS
Sbjct: 276 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSK 335
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 336 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRL 394
Query: 508 TAND 511
+ +
Sbjct: 395 ASPE 398
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
+ L L + T G I D+G L++ NL+ L + +TD +K + +++S
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L L L + +TD+ LEL++GL+ L ++++ N+ I AG+ L +K L + LE KV
Sbjct: 216 LDALFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKV 274
Query: 508 TANDIKRL 515
T + +L
Sbjct: 275 TDEGLVKL 282
>gi|46447548|ref|YP_008913.1| hypothetical protein pc1914 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401189|emb|CAF24638.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 181/373 (48%), Gaps = 57/373 (15%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +T++ L+ LKDC N++ L F C ++D GL HL L L L +T G+
Sbjct: 203 ENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGL 262
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GLV+L L+ L+ L++ +C +TD+ + L+ LT L+
Sbjct: 263 AYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQ 322
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV 242
L +S C +TD+G+A+L L+ + + C C + +
Sbjct: 323 HLGLSCCENLTDAGLAHLALLTTLQHLDLSC-------CYN------------------L 357
Query: 243 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLK 299
T A L L+ L +L +L L C+ L+D G + + +L+ L+L FN +TD L HL
Sbjct: 358 TDASLSHLTPLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFN-LTDAGLSHLT 416
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
LT L+ LNL C + D GL +LT L L+ L LS+ + +GL HL+ LT L+ ++L
Sbjct: 417 PLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDL 476
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAA 416
+ +NL TD GLA LT LT L HLDL R+TD G
Sbjct: 477 KY------------------CINL-----TDAGLAHLTPLTALQHLDLSRCRRLTDDGLD 513
Query: 417 YLRNFKNLRSLEI 429
+ +LEI
Sbjct: 514 RFKTLATSLNLEI 526
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 164/317 (51%), Gaps = 35/317 (11%)
Query: 230 QKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF 287
+K+ +LN E +T A L +L ++ L +C+ ++D G + L+ L+L +
Sbjct: 194 KKIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSY 253
Query: 288 NE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 344
E +TD L +LK LT L+ LNL C + D GLV+LT L L+ L+LS + + +GL
Sbjct: 254 CENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLA 313
Query: 345 HLSGLTNLESI------NLSFTG--------------------ISDGSLRKLAGLSSLKS 378
HL+ LT L+ + NL+ G ++D SL L L++L+
Sbjct: 314 HLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQH 373
Query: 379 LNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLT 435
L L +TD GLA LT LT L HLDL +TD+G ++L L+ L + LT
Sbjct: 374 LYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLT 433
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPL 494
DAG+ H+ L +L LNLS+ +LTD L ++ LT L L++ +T AGL HL PL
Sbjct: 434 DAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPL 493
Query: 495 KNLRSLTLESCKVTAND 511
L+ L L C+ +D
Sbjct: 494 TALQHLDLSRCRRLTDD 510
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 193/408 (47%), Gaps = 69/408 (16%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
N Q +DF I +E L+F N +T + A N+ L ++
Sbjct: 178 QNFQLVDFEKIINHFSKKIE---------VLNFSENTHLTNAHLLALKDCKNIEVLYFKK 228
Query: 141 CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
C + GL +L L L+ L++ +C +TD+ + L LT L+ L +S C +TD+G+
Sbjct: 229 CRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGL- 287
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLF 257
V LT L L L+L C +T A L L+ L +L
Sbjct: 288 -------------------------VHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQ 322
Query: 258 YLNLNRCQ-LSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-G 313
+L L+ C+ L+D G + + +L+ L+L +N +TD L HL LT L+ L L C
Sbjct: 323 HLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYN-LTDASLSHLTPLTALQHLYLIGCEN 381
Query: 314 IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 371
+ D GL +LT L L+ L+LS + +GL HL+ LT L+ +NLS ++D L L
Sbjct: 382 LTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLT 441
Query: 372 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
L +L+ LNL + R +TD GLA LT LT L HLDL Y N
Sbjct: 442 TLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDL----------KYCIN---------- 481
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
LTDAG+ H+ L++L L+LS+ LTD L+ L ++L +
Sbjct: 482 ---LTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLATSLNLEI 526
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 179/358 (50%), Gaps = 37/358 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCS 214
K+E LN +T++ + L N++ L C VTD+G+A+L
Sbjct: 195 KIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHL-------------- 240
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 273
V L LQ L L E +T A L L L +L +LNL+ C L+D G
Sbjct: 241 ---------VPLKGLQHLDLSYCEN--LTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVH 289
Query: 274 FSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCL 331
+ + L+ L+L + E +TD L HL LT L+ L L C + D GL +L L L+ L
Sbjct: 290 LTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHL 349
Query: 332 ELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITD 388
+LS + + L HL+ LT L+ + L ++D L L L++L+ L+L +TD
Sbjct: 350 DLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTD 409
Query: 389 TGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 446
GL+ LT LTGL HL+L ++TD+G A+L L+ L + LTDAG+ H+ L+
Sbjct: 410 AGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLT 469
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 503
+L L+L NLTD L ++ LT L L++S R+T GL K L SL LE
Sbjct: 470 ALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLAT--SLNLE 525
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ LD +CI ++D GL HL L+ L L R +T G+ F
Sbjct: 457 LTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFK 516
Query: 129 GLINLVKLDLER 140
L + L++ R
Sbjct: 517 TLATSLNLEIVR 528
>gi|440717669|ref|ZP_20898151.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
gi|436437289|gb|ELP30945.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
Length = 442
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 159/324 (49%), Gaps = 11/324 (3%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 105 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 160
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 161 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 218
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
+N +C I MK L L++LQ SK+ D+ +A LKGLS + I +
Sbjct: 219 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGE 278
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIG 278
H+ + L L V L +S L ++ +++++ C+L S +G + K+
Sbjct: 279 GIQHI--AGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLI 336
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+
Sbjct: 337 GLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQL 396
Query: 339 GSSGLRHLSGLTNLESINLSFTGI 362
G L+ L NL+S+N++ T I
Sbjct: 397 GDDSFLELAKLPNLKSMNVANTSI 420
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 159/347 (45%), Gaps = 18/347 (5%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ L HL N FN I D G+E+L+ L+NL L+ + AIT Q +K +
Sbjct: 85 EESLQHLSGIPNTTEATFN-GPGIDDAGMENLKSLANLKRLTLA-DTAITDQTLKTVGEM 142
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+L L L R GL L GL KL +++++ N I D+ M L+ + L +++ S
Sbjct: 143 TSLDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKS 201
Query: 191 KVTDSGIAYLKGLSISSVIFILCSMI----IRLFCLHVFLTSLQKLTLLNLEG--CPVTA 244
KVTD G+ L L + S+ F C+ I +++ Q TL NL+G +
Sbjct: 202 KVTDEGLVKLAPLPLKSINFNYCTTINGPTMKMLG--------QTPTLENLQGDYSKIND 253
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
A + L L L L + C ++ +G + + +L L + + D+ L + L +
Sbjct: 254 ASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAV 313
Query: 305 ESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
+++ C + EG+ L L L L L +T+ L L NLE +NL T ++
Sbjct: 314 THVDISECRLASPEGIAQLGKLIGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 373
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
D SL L ++ LK+LN+ Q+ D L L L +++ I
Sbjct: 374 DESLPVLMKMTKLKTLNVAGTQLGDDSFLELAKLPNLKSMNVANTSI 420
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 180/422 (42%), Gaps = 65/422 (15%)
Query: 69 VTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I KD N+ F I GG+E HL G+ N T +F I G
Sbjct: 57 LTEAGYILTKDDDGNV----VEFSIANQKGGIEESLQHLSGIPNTTEATFN-GPGIDDAG 111
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 112 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 146
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
+L + + VTD G+ L GLS KL ++L +
Sbjct: 147 ALFLRRTGVTDEGLELLTGLS--------------------------KLRAIDLRNTNIG 180
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 302
A +DSL+ + +L + L + +++D+G K + + LK +N + I + L
Sbjct: 181 DAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTP 239
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
LE+L D I D + L GL LK L + V G++H++G L L + +
Sbjct: 240 TLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSV 299
Query: 363 SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
D L+ ++ L ++ +++ + R + G+A L L GLT+L L+ + D A +
Sbjct: 300 DDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGLTYLGLWETKTNDETLAGFGDL 359
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
NL L + +TD + + ++ L LN++ L D + ++ L L S+NV+N+
Sbjct: 360 VNLEELNLKSTAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANT 418
Query: 482 RI 483
I
Sbjct: 419 SI 420
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 4/263 (1%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
L LS + + N + D G E + +LK L L ITD+ L + +T+L+
Sbjct: 87 SLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLD 146
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+L L G+ DEGL LTGL L+ ++L +T +G +G+ L+ + L + L + ++D
Sbjct: 147 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 206
Query: 366 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L KLA L LKS+N + I + L L +L ++I D+ A L+ L
Sbjct: 207 GLVKLAPL-PLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKL 265
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
+ L I G +T G++HI +L L ++ ++ D L++IS L + +++S R+
Sbjct: 266 KRLRIRGCDVTGEGIQHIAGNKALARFEL-RDSSVDDDGLKVISQLPAVTHVDISECRLA 324
Query: 485 SA-GLRHLKPLKNLRSLTLESCK 506
S G+ L L L L L K
Sbjct: 325 SPEGIAQLGKLIGLTYLGLWETK 347
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 25/244 (10%)
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+E L HL G+ N + GI D G+ NL L NLK L L+DT + L+ + +T+
Sbjct: 85 EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L+++ L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204
Query: 412 DSGAAYLR-------NF-----------------KNLRSLEICGGGLTDAGVKHIKDLSS 447
D G L NF L +L+ + DA + +K LS
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSK 264
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRL 323
Query: 508 TAND 511
+ +
Sbjct: 324 ASPE 327
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
L L+ + T G I D+G L++ NL+ L + +TD +K + +++SL
Sbjct: 88 LQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLDA 147
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
L L + +TD+ LEL++GL+ L ++++ N+ I AG+ L +K L + LE KVT
Sbjct: 148 LFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 206
Query: 511 DIKRL 515
+ +L
Sbjct: 207 GLVKL 211
>gi|417301579|ref|ZP_12088730.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327542171|gb|EGF28664.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 442
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 154/322 (47%), Gaps = 7/322 (2%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 105 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 162
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S+N
Sbjct: 163 LTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSIN 220
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+C I MK L L+ LQ SK+ D+ +A LKGLS + I +
Sbjct: 221 FNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGI 280
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 280
H+ + L L V L +S L ++ Y++++ C+L S +G + K+ L
Sbjct: 281 QHI--AGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGL 338
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 339 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 398
Query: 341 SGLRHLSGLTNLESINLSFTGI 362
L+ L NL+S+N++ T I
Sbjct: 399 DSFLELAKLPNLKSMNVANTSI 420
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 165/379 (43%), Gaps = 31/379 (8%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + ++ +G+ N K G+ NL L KL+ L +
Sbjct: 71 NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 129
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
ITD +K L +++ L + + VTD G+ L GLS
Sbjct: 130 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLS---------------------- 167
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
KL ++L + A +DSL+ + +L + L + +++D+G K + + LK +N
Sbjct: 168 ----KLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSINFN 222
Query: 287 F-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+ I + L LE L D I D + L GL LK L + V G++H
Sbjct: 223 YCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGIQH 282
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD 404
++G L L + + D L+ ++ L ++ +++ + R + G+A L LTGLT+L
Sbjct: 283 IAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGLTYLG 342
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L+ + D A + NL L + +TD + + ++ L LN++ L D +
Sbjct: 343 LWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSF 401
Query: 465 ELISGLTGLVSLNVSNSRI 483
++ L L S+NV+N+ I
Sbjct: 402 LELAKLPNLKSMNVANTSI 420
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 144/285 (50%), Gaps = 4/285 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L+ + T G + A +++L++L L YL L ++D+ + K+ S++ L L
Sbjct: 91 LSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQGLFL 150
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+TDE L L GL+ L +++L + IGD G+ +L + L ++L ++V GL
Sbjct: 151 RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVK 210
Query: 346 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L+ L L+SIN ++ T I+ +++ L +L+ L D +I D +A L L+ L L
Sbjct: 211 LAPLP-LKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLR 269
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKT 463
+ G +T G ++ K L E+ + D G+K I L ++T +++S+ C L + +
Sbjct: 270 IRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE-CRLASPEG 328
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ + LTGL L + ++ L L NL L L+S VT
Sbjct: 329 IAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 373
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 25/244 (10%)
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+E L HL G+ N + GI D G+ NLT L LK L L+DT + L+ L +
Sbjct: 85 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 144
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
++ + L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 145 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVT 204
Query: 412 DSGAAYLR-------NFK-----NLRSLEICGGGLT------------DAGVKHIKDLSS 447
D G L NF N ++++ G T DA + +K LS
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSK 264
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRL 323
Query: 508 TAND 511
+ +
Sbjct: 324 ASPE 327
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
L L+ + T G I D+G L + L+ L + +TD +K L S+
Sbjct: 88 LQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQG 147
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
L L + +TD+ LEL++GL+ L ++++ N+ I AG+ L +K L + LE KVT
Sbjct: 148 LFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVTDE 206
Query: 511 DIKRL 515
+ +L
Sbjct: 207 GLVKL 211
>gi|329905907|ref|ZP_08274287.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547418|gb|EGF32242.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
Length = 552
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 224/485 (46%), Gaps = 87/485 (17%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL L + L+ LD C I D GL HL +++LT L+ R+ IT G++
Sbjct: 47 SKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVRQCTNITDAGLEQ 106
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L L +L+L C RI G+ +LK L L L++ C+ I+++ + L L L
Sbjct: 107 LANLPRLARLNLAGCHRITAAGIAHLKKL-PLTYLDLSGCSGISNAAIAHLKA-HQLTEL 164
Query: 186 QIS-CSKVTDSGIAYLK-------------GLSISSVIFILCSMIIRL---------FCL 222
+S C+ D G A+L G + S + F+ S + RL F
Sbjct: 165 NLSDCTGFGDEGFAHLAEVPLQTLDLSGCTGFTNSGLRFLNKSTLTRLSLRNCTQLDFGA 224
Query: 223 HVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 280
L Q L L+L GC + L +L L L +L+L R L+D G E +++ SL
Sbjct: 225 TFRLYGAQSLRHLDLAGCEGLDNTALTALQDL-PLEHLDLARNTFLNDTGLESLAEMTSL 283
Query: 281 KVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQ 337
+ LNL G ++TD L HL L L+ L L++C D GL L+ L L+ LEL D
Sbjct: 284 RYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHL-PLETLELVDCVA 342
Query: 338 VGSSGLRHLSG-LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 394
+ ++ L L G L+ ++LS T +SD L LA +++L+ L+L R TD G AL
Sbjct: 343 LTNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVAL 402
Query: 395 ---------------------TSLTG--------------------------LTHLDLFG 407
T+L+G L DL
Sbjct: 403 RELPLGQLRLNGWIGLTDQGMTALSGMPLQSLGLIGCDNIDGSGLAQLNSRCLQKFDLSH 462
Query: 408 AR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
R + D YLR L+ L++ G +TDAG+ H+ L LT L+L+ N +TD+ L+
Sbjct: 463 CRLLNDDAMIYLRRLP-LKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLK 520
Query: 466 LISGL 470
+SG+
Sbjct: 521 NLSGM 525
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 137/445 (30%), Positives = 212/445 (47%), Gaps = 57/445 (12%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
+ +LT+L+ N+ +T G+ + A L L +LDL CT I GL +L + L LN++
Sbjct: 35 IRHLTNLNLSNNSKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVR 94
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
C ITD+ ++ L+ L L L ++ C ++T +GIA+LK L ++ + CS I
Sbjct: 95 QCTNITDAGLEQLANLPRLARLNLAGCHRITAAGIAHLKKLPLTYLDLSGCSGISNAAIA 154
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD---DGCEKFSKIGS 279
H+ +LT LNL C + G + +L L GC F+ G
Sbjct: 155 HL---KAHQLTELNLSDC----------TGFGDEGFAHLAEVPLQTLDLSGCTGFTNSG- 200
Query: 280 LKVLN------LGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVN--LTGLCNL 328
L+ LN L T L G +L L+L C EGL N LT L +L
Sbjct: 201 LRFLNKSTLTRLSLRNCTQLDFGATFRLYGAQSLRHLDLAGC----EGLDNTALTALQDL 256
Query: 329 KCLELS---DTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DA 383
L +T + +GL L+ +T+L +NLS ++D +L LA L +L+ L L +
Sbjct: 257 PLEHLDLARNTFLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNC 316
Query: 384 RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVK 440
R+ TD GLA L+ L L L+L +T++ A L L+ L++ G L+DAG+
Sbjct: 317 RRTTDAGLAQLSHLP-LETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLA 375
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR------ITSAGLRHLKPL 494
H+ D+++L L+LS N N TD +G L L + R +T G+ L +
Sbjct: 376 HLADITTLRKLDLSWNRNFTD------AGAVALRELPLGQLRLNGWIGLTDQGMTALSGM 429
Query: 495 KNLRSLTLESC-KVTANDIKRLQSR 518
L+SL L C + + + +L SR
Sbjct: 430 P-LQSLGLIGCDNIDGSGLAQLNSR 453
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 148/325 (45%), Gaps = 36/325 (11%)
Query: 56 GSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL +DL+G + D + L L+D L+ LD ++D GLE L +++L L+
Sbjct: 231 AQSLRHLDLAGCEGLDNTALTALQDLP-LEHLDLARNTFLNDTGLESLAEMTSLRYLNLS 289
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+T + A L L L L C R GL L L LE+L + C +T++ +
Sbjct: 290 GGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHL-PLETLELVDCVALTNTAL 348
Query: 174 KPLSG-LTNLKSLQIS-CSKVTDSGIAYLK--------GLSISSVIFILCSMIIRLFCL- 222
L G L+ L +S C+ ++D+G+A+L LS + ++ +R L
Sbjct: 349 ARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALRELPLG 408
Query: 223 HVFLTSLQKLT---LLNLEGCPVTAACL--------DSLSALGS--LFYLNLNRCQLSDD 269
+ L LT + L G P+ + L L+ L S L +L+ C+L +D
Sbjct: 409 QLRLNGWIGLTDQGMTALSGMPLQSLGLIGCDNIDGSGLAQLNSRCLQKFDLSHCRLLND 468
Query: 270 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLC- 326
+ + LK L+L + ITD L HL GL L L+L + G+ DEGL NL+G+
Sbjct: 469 DAMIYLRRLPLKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGMPL 527
Query: 327 ----NLKCLELSDTQVGSSGLRHLS 347
L C +++ ++GL L
Sbjct: 528 QQLRVLGCHQVTPNGFWAAGLERLQ 552
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 13 ELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD- 71
+L ++R T+ A R+ L L L + G+ D+ M ++ G L S+ L G D D
Sbjct: 387 DLSWNRNFTDAGAVALRELPLGQLRLNGWIGLTDQGMTALS--GMPLQSLGLIGCDNIDG 444
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
SGL L + LQ D + C ++D + +LR L L L AIT G+ GL
Sbjct: 445 SGLAQL-NSRCLQKFDLSHCRLLNDDAMIYLRRLP-LKELDLSWCGAITDAGLAHLTGL- 501
Query: 132 NLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
L +LDL + + GL NL G M L+ L + C+ +T
Sbjct: 502 QLTRLDLTYNSGVTDEGLKNLSG-MPLQQLRVLGCHQVT 539
>gi|149174540|ref|ZP_01853166.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148846650|gb|EDL60987.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 309
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 142/262 (54%), Gaps = 1/262 (0%)
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
++ ++ G + A L L L L L+L+ +++DDG + SL+ + L ++
Sbjct: 40 ISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPVS 99
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
D L K L+NLE LNL + D GL +L L +LK L L+ ++ + GL HLSGL +
Sbjct: 100 DSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKS 159
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
LE++ LS T I+D +L L L L+ L L QITD GL + LT L L L +IT
Sbjct: 160 LETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQIT 219
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
D G YL K++ LE+ +T+AG+ IK L ++ +NL +N +++DK + + +
Sbjct: 220 DDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNL-RNTDVSDKCITSLKKMK 278
Query: 472 GLVSLNVSNSRITSAGLRHLKP 493
L +L + + IT G+ L+
Sbjct: 279 NLGTLYIDGTEITEEGIAKLEK 300
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 2/263 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
N+ + S SK+ D+G+ YL LS + + S + +H L SL+ L + L G
Sbjct: 39 NISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVH--LKSLKSLREITLHGI 96
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
PV+ + L L +L LNL+R +++D G + + SLK L L EIT + L HL G
Sbjct: 97 PVSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSG 156
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L +LE+L L I D+ L +L L L+ L L DTQ+ GL+ + GLT L+ + L T
Sbjct: 157 LKSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNT 216
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I+D L+ L + ++ L L+ QIT+ G++ + L + ++L ++D L+
Sbjct: 217 QITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKK 276
Query: 421 FKNLRSLEICGGGLTDAGVKHIK 443
KNL +L I G +T+ G+ ++
Sbjct: 277 MKNLGTLYIDGTEITEEGIAKLE 299
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 146/268 (54%), Gaps = 2/268 (0%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
G++ ++ + +L D G ++ L+ L+L +++TD+ +VHLK L +L + L
Sbjct: 38 GNISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIP 97
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+ D GL L NL+ L LS T+V +GL+HL L +L+ + L+ I+ L L+GL
Sbjct: 98 VSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGL 157
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
SL++L L QITD LA L +L L L L +ITD G ++ L+ L +
Sbjct: 158 KSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQ 217
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+TD G+K++ + + L L+ + +T+ + I L +V +N+ N+ ++ + LK
Sbjct: 218 ITDDGLKYLIKMKDMEWLELN-DTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKK 276
Query: 494 LKNLRSLTLESCKVTANDIKRLQSRDLP 521
+KNL +L ++ ++T I +L+ + LP
Sbjct: 277 MKNLGTLYIDGTEITEEGIAKLE-KSLP 303
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 130/266 (48%), Gaps = 29/266 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DLSGS VTD G++HLK +L+ + + I +SD GL + LSNL L+ R
Sbjct: 62 SKLRKLDLSGSKVTDDGMVHLKSLKSLREITLH-GIPVSDSGLAEFKKLSNLEILNLSRT 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K L +L +L L GL +L GL LE+L + ITD + L
Sbjct: 121 K-VTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ-ITDDALAHL 178
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L L+ L + +++TD G+ +KG LT LQ+L L N
Sbjct: 179 KTLKKLRVLLLRDTQITDEGLKQIKG-----------------------LTRLQRLWLRN 215
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
+T L L + + +L LN Q+++ G + + ++ +NL +++D+C+
Sbjct: 216 ---TQITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCIT 272
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNL 322
LK + NL +L +D I +EG+ L
Sbjct: 273 SLKKMKNLGTLYIDGTEITEEGIAKL 298
>gi|46447626|ref|YP_008991.1| hypothetical protein pc1992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401267|emb|CAF24716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 537
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 157/290 (54%), Gaps = 13/290 (4%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT--SLSFRRNNAITAQGMKA 126
+TD+ L+ LKDC NL+ L+ C ++D GL HL L+ L LSF RN +T G+
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRN--LTDAGLAN 309
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
LI L LDL C + GL +L L L L++ C +TD+ + L+ L +L+ L
Sbjct: 310 LTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHL 369
Query: 186 QIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVF-LTSLQKLTLLNLEGCPV 242
+ C K++D+G+A+L+ L ++ + C + H+ LT+LQ L+L + +
Sbjct: 370 NLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKN--L 427
Query: 243 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 300
T A L L L +L +L+L+ CQ L++DG F + +L+ LNL ++TD L HL
Sbjct: 428 TEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSP 487
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 349
L L+ L+L I D GL +L L L+ L LS T + +GL HLS L
Sbjct: 488 LGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 172/324 (53%), Gaps = 35/324 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
++E LN +TD+ + L NLK L + SC +TD+G+A+L
Sbjct: 240 EIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHL-------------- 285
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
T L L L+L C +T A L +L+ L +L +L+L+ C+ L+D G
Sbjct: 286 ------------TPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLA 333
Query: 273 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 330
+ +G+L L+L ++TD L HL L +L+ LNL C + D GL +L L L+
Sbjct: 334 HLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQH 393
Query: 331 LELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 387
L+LS Q + +GL HL+ LT L+ ++L+ +++ L L L +L+ L+L +++T
Sbjct: 394 LDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLT 453
Query: 388 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
+ GL SLT L +L+L ++TD+G A+L L+ L++ +TDAG+ H+K L
Sbjct: 454 NDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLG 513
Query: 447 SLTLLNLSQNCNLTDKTLELISGL 470
+L L LS+ NLTD L +S L
Sbjct: 514 ALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 149/272 (54%), Gaps = 8/272 (2%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLK 299
+T A L +L +L LNL C+ L+D G + + +L+ L+L F +TD L +L
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLT 311
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINL 357
L L+ L+L C + D GL +LT L L L+LS ++ +GL HL+ L +L+ +NL
Sbjct: 312 PLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNL 371
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGAR-ITDSG 414
+ +SD L L L +L+ L+L Q +TD GLA L LT L HL L + +T++G
Sbjct: 372 RYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAG 431
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+LR L+ L++ LT+ G+ K L++L LNL+ LTD L +S L L
Sbjct: 432 LVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGAL 491
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
L++ + IT AGL HLKPL L+ L L C
Sbjct: 492 QHLDLWCTNITDAGLAHLKPLGALQYLGLSRC 523
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 139/267 (52%), Gaps = 8/267 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++TD+GL HL + L+ LD +FC ++D GL +L L L L +T G+
Sbjct: 273 SCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGL 332
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL C ++ GL +L L+ L+ LN+++C ++D+ + L L L+
Sbjct: 333 AHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQ 392
Query: 184 SLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
L +S C +TD+G+A+L L ++ + C + +H L L L L+L C
Sbjct: 393 HLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVH--LRPLVTLQHLDLSYCQ 450
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
+T L +L +L YLNLN CQ L+D G S +G+L+ L+L ITD L HLK
Sbjct: 451 KLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLK 510
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGL 325
L L+ L L C + D GL +L+ L
Sbjct: 511 PLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 138/248 (55%), Gaps = 10/248 (4%)
Query: 279 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 336
+LK+LNL +TD L HL LT L L+L C + D GL NLT L L+ L+LS
Sbjct: 265 NLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWC 324
Query: 337 Q-VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 393
+ + +GL HL+ L L ++LS G ++D L L L L+ LNL ++++D GLA
Sbjct: 325 KNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAH 384
Query: 394 LTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTL 450
L SL L HLDL + +TD+G A+L L+ L + C LT+AG+ H++ L +L
Sbjct: 385 LRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKN-LTEAGLVHLRPLVTLQH 443
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L+LS LT+ L L LT L LN+++ ++T AGL HL PL L+ L L +T
Sbjct: 444 LDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITD 503
Query: 510 NDIKRLQS 517
+ L+
Sbjct: 504 AGLAHLKP 511
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 132/248 (53%), Gaps = 31/248 (12%)
Query: 272 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
EK K S ++ L F++ +TD L+ LK NL+ LNL SC NLT
Sbjct: 231 EKILKHFSNEIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCK-------NLT----- 278
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 386
+GL HL+ LT L ++LSF ++D L L L +L+ L+L + +
Sbjct: 279 -----------DAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNL 327
Query: 387 TDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKD 444
TD GLA LT L L +LDL ++TD+G A+L +L+ L + L+DAG+ H++
Sbjct: 328 TDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRS 387
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 503
L +L L+LS NLTD L ++ LT L L+++ + +T AGL HL+PL L+ L L
Sbjct: 388 LVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLS 447
Query: 504 SCKVTAND 511
C+ ND
Sbjct: 448 YCQKLTND 455
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 126/270 (46%), Gaps = 32/270 (11%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVT 70
+L + R LT+ L ALQ L L + D + + G+ L +DLS +T
Sbjct: 295 DLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGA-LHYLDLSICGKLT 353
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL +LQ L+ +C ++SD GL HLR L L L +T G+ A L
Sbjct: 354 DAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARL 413
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L L L RC + GLV+L+ L+ L+ L++ +C +T+ + LT L+ L ++
Sbjct: 414 TALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNH 473
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
C K+TD+G+A+L L + + C+ I T A L
Sbjct: 474 CQKLTDAGLAHLSPLGALQHLDLWCTNI--------------------------TDAGLA 507
Query: 249 SLSALGSLFYLNLNRC-QLSDDGCEKFSKI 277
L LG+L YL L+RC L+D G S +
Sbjct: 508 HLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
>gi|46447589|ref|YP_008954.1| hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401230|emb|CAF24679.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 454
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 140/255 (54%), Gaps = 19/255 (7%)
Query: 277 IGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK----- 329
+ ++ LN N + D L+ LK NL+ L+L++C I D+GL +L L +L+
Sbjct: 194 LDEIEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLY 253
Query: 330 -CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQI 386
C+ L+D +GL HL+ LT L+ +NLS+ I+D L L L+ L+ LNL D +
Sbjct: 254 FCVNLTD-----AGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENL 308
Query: 387 TDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 444
TD GLA LT LT L +L+L +T+ G A+L L+ L + LTDAG H+
Sbjct: 309 TDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLAS 368
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 503
L++L L+LS NLTD L ++ LT L L +S R +T GL HL PL L+ L L
Sbjct: 369 LTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLR 428
Query: 504 SC-KVTANDIKRLQS 517
C KVT + R ++
Sbjct: 429 ECDKVTDAGLARFKT 443
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 127/228 (55%), Gaps = 8/228 (3%)
Query: 259 LNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IG 315
L+L CQ ++DDG + + SL+ LNL F +TD L HL LT L+ LNL C I
Sbjct: 225 LHLEACQAITDDGLAHLALLTSLQHLNLYFCVNLTDAGLAHLTPLTALQHLNLSYCWKIT 284
Query: 316 DEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 373
D GL +LT L +L+ L LSD + + +GL HL+ LT L +NLS +++ L LA L
Sbjct: 285 DAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPL 344
Query: 374 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG 431
+ L+ LNL +TD G + L SLT L HLDL +TD+G AYL + L+ L +
Sbjct: 345 TGLQYLNLKWCWNLTDAGFSHLASLTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQ 404
Query: 432 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
LTD G+ H+ L++L L+L + +TD L L ++L +
Sbjct: 405 CRNLTDVGLAHLTPLTALQHLDLRECDKVTDAGLARFKTLATSLNLKI 452
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 30/216 (13%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C +I+D GL HL L++L L+ +T G+
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L+ L+L +C + GL +L L L+ LN+KWC +TD+ L+ LT L+ L
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 187 IS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA 244
+S C +TD+G+AY L SL L L L C +T
Sbjct: 377 LSDCENLTDAGLAY--------------------------LASLTALQYLGLSQCRNLTD 410
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS 279
L L+ L +L +L+L C +++D G +F + +
Sbjct: 411 VGLAHLTPLTALQHLDLRECDKVTDAGLARFKTLAT 446
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 136/282 (48%), Gaps = 35/282 (12%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L +L L+L C
Sbjct: 197 IEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCV 256
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ +C ITD+ + L+ LT+L+ L +S C +TD+G+A+
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAH- 315
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 259
LT L L LNL C +T L L+ L L YL
Sbjct: 316 -------------------------LTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYL 350
Query: 260 NLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGD 316
NL C L+D G + + +L+ L+L E +TD L +L LT L+ L L C + D
Sbjct: 351 NLKWCWNLTDAGFSHLASLTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTD 410
Query: 317 EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
GL +LT L L+ L+L + +V +GL L S+NL
Sbjct: 411 VGLAHLTPLTALQHLDLRECDKVTDAGLARFKTLAT--SLNL 450
>gi|290993162|ref|XP_002679202.1| predicted protein [Naegleria gruberi]
gi|284092818|gb|EFC46458.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 161/346 (46%), Gaps = 29/346 (8%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
+ D K + GL L L I S + D G ++ L
Sbjct: 13 EQDAKYIGGLKQLTRLTIYSSHIRDIG----------------------------KISEL 44
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
++LT LN+ + + L L +++ Q+ +GC+ S++ L L++ N
Sbjct: 45 KQLTYLNVPANGIWCYTTKQVKEFKQLTTLIIDQNQVGSEGCKYISELKQLTSLSIDENF 104
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
I DE + +L L L LN+ + G+G EG + + L L + ++G G +++S L
Sbjct: 105 IYDEGVEYLSELAQLTYLNISNNGVGSEGCKYVGKMKRLTSLGFYNNRIGKEGAKYISTL 164
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
L+ +++S T I D L + LS L SL+L +I + G L+ L LT+L++
Sbjct: 165 NQLKQLDISRTNIGDKGLEHIGQLSQLTSLDLYCNKIGNGGAKYLSELKQLTYLNISENH 224
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I + G Y+ K L +L I + + GVK+I +L LT LN+S+N + ++ ++ I
Sbjct: 225 IGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNISEN-RIGNEGIKYIGD 283
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L L ++ +S + I S G +++ L L SL L S + K L
Sbjct: 284 LKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNNIDNEGAKYL 329
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 144/304 (47%), Gaps = 28/304 (9%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
++ L++LT L + + + +S L L YLN+ + ++ + L L
Sbjct: 18 YIGGLKQLTRLTIYSSHIRD--IGKISELKQLTYLNVPANGIWCYTTKQVKEFKQLTTLI 75
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N++ E ++ L L SL++D I DEG+ L+ L L L +S+ VGS G +
Sbjct: 76 IDQNQVGSEGCKYISELKQLTSLSIDENFIYDEGVEYLSELAQLTYLNISNNGVGSEGCK 135
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++ + L S+ I + ++ L+ LK L++ I D GL + L+ LT LD
Sbjct: 136 YVGKMKRLTSLGFYNNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQLSQLTSLD 195
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L+ +I + GA YL +L LT LN+S+N ++ ++ +
Sbjct: 196 LYCNKIGNGGAKYL------------------------SELKQLTYLNISEN-HIGNEGI 230
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 523
+ I L LV+L ++N+RI + G++++ LK L L + ++ IK + + L N+
Sbjct: 231 KYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNISENRIGNEGIKYIGDLKQLTNI 290
Query: 524 VSFR 527
+ R
Sbjct: 291 IISR 294
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 135/310 (43%), Gaps = 51/310 (16%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S L L SL I + + D G+ YL
Sbjct: 87 KYISELKQLTSLSIDENFIYDEGVEYL--------------------------------- 113
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
S L L YLN++ + +GC+ K+ L L N I E
Sbjct: 114 -----------------SELAQLTYLNISNNGVGSEGCKYVGKMKRLTSLGFYNNRIGKE 156
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
++ L L+ L++ IGD+GL ++ L L L+L ++G+ G ++LS L L
Sbjct: 157 GAKYISTLNQLKQLDISRTNIGDKGLEHIGQLSQLTSLDLYCNKIGNGGAKYLSELKQLT 216
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+N+S I + ++ + L L +L ++ +I + G+ + L LT+L++ RI +
Sbjct: 217 YLNISENHIGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYLNISENRIGNE 276
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
G Y+ + K L ++ I + G K+I LS LT L LS N N+ ++ + +S L L
Sbjct: 277 GIKYIGDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSN-NIDNEGAKYLSELKEL 335
Query: 474 VSLNVSNSRI 483
LN+ ++I
Sbjct: 336 SFLNIERNKI 345
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 13/261 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ + + + D G+ +L + + L L+ + + G +++ + LTSL F
Sbjct: 90 SELKQLTSLSIDENFIYDEGVEYLSELAQLTYLNISNN-GVGSEGCKYVGKMKRLTSLGF 148
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G K + L L +LD+ R GL ++ L +L SL++ +CN I +
Sbjct: 149 Y-NNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQLSQLTSLDL-YCNKIGNGGA 206
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII---RLFCLHV-FLTSL 229
K LS L L L IS + + + GI Y+ L L ++II R+ V ++ L
Sbjct: 207 KYLSELKQLTYLNISENHIGNEGIKYIGELK------QLVNLIINNNRIGNDGVKYIGEL 260
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
++LT LN+ + + + L L + ++R + +G + K+ L L L N
Sbjct: 261 KQLTYLNISENRIGNEGIKYIGDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNN 320
Query: 290 ITDECLVHLKGLTNLESLNLD 310
I +E +L L L LN++
Sbjct: 321 IDNEGAKYLSELKELSFLNIE 341
>gi|430746590|ref|YP_007205719.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
gi|430018310|gb|AGA30024.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
Length = 506
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 205/455 (45%), Gaps = 84/455 (18%)
Query: 47 KWM-DVIASQ-GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------ISDGG 98
KWM D ++++V L G +V D L++ L +++ F IQ ++ G
Sbjct: 112 KWMRDAFGPDLFDTVVNVHLEGDNVDDE---LLENVGKLHGVEW-FTIQGHAAPNLTPAG 167
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ LR LS L LS R F T HG L L G +L
Sbjct: 168 MAQLRTLSRLKGLSVR-----------GF--------------TDSHGFLAGLMGKTRLS 202
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
L + +TD +M + GLT+L+ LQ+ VTD G A++
Sbjct: 203 HLRLPEA-AVTDDEMAIIGGLTDLEVLQLDGRNVTDRGFAHV------------------ 243
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
+L++L+LL++ G +T L+ + L L++ LS D F++
Sbjct: 244 --------ANLKELSLLDMPGVRIT-----DLAPVTDLVQLDV--LGLSPDRA-TFAR-- 285
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
V + G L L+GLTNL L L + I D L GL L L + ++
Sbjct: 286 --SVPSPG----GPSSLGPLRGLTNLTQLTLGATQIEDRELAVAAGLPKLSYLMIGGRRI 339
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSL 397
+GL L+ +L + + T I+D LR L+ L +L L ++ +TD GL L+
Sbjct: 340 TEAGLARLAESKSLTGLRFTDTSIAD--LRPLSPRLHALWGLYMENSALTDAGLEPLSDA 397
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
T + L + G+R+TD+G +L +L L + +TDAG+ +K L SL L+L++
Sbjct: 398 TRIGDLTITGSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGRLKSLKSLETLSLTE-T 456
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
LTD ++E ++G L SLN+ S I+ AG+ LK
Sbjct: 457 KLTDSSVETLAGFQSLKSLNLDRSGISPAGIERLK 491
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 137/304 (45%), Gaps = 22/304 (7%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L +L L++ G + L L L +L L ++DD + L+VL L
Sbjct: 171 LRTLSRLKGLSVRGFTDSHGFLAGLMGKTRLSHLRLPEAAVTDDEMAIIGGLTDLEVLQL 230
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV------- 338
+TD H+ L L L++ I D L +T L L L LS +
Sbjct: 231 DGRNVTDRGFAHVANLKELSLLDMPGVRITD--LAPVTDLVQLDVLGLSPDRATFARSVP 288
Query: 339 ---GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
G S L L GLTNL + L T I D L AGL L L + R+IT+ GLA L
Sbjct: 289 SPGGPSSLGPLRGLTNLTQLTLGATQIEDRELAVAAGLPKLSYLMIGGRRITEAGLARLA 348
Query: 396 SLTGLTHLDLFGARITDSGAAYLR----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
LT G R TD+ A LR L L + LTDAG++ + D + + L
Sbjct: 349 ESKSLT-----GLRFTDTSIADLRPLSPRLHALWGLYMENSALTDAGLEPLSDATRIGDL 403
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
++ +TD L ++ L L L + S IT AGL LK LK+L +L+L K+T +
Sbjct: 404 TIT-GSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGRLKSLKSLETLSLTETKLTDSS 462
Query: 512 IKRL 515
++ L
Sbjct: 463 VETL 466
>gi|421611905|ref|ZP_16053033.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
gi|408497310|gb|EKK01841.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
Length = 455
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 154/322 (47%), Gaps = 7/322 (2%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R +N I GM + A + L + LE+ GLV L L L+S+N
Sbjct: 176 LTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+C I MK L L++LQ SK+ D +A LKGLS + I +
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGI 293
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 280
H+ + L L V L +S L ++ Y++++ C+L S +G + ++ L
Sbjct: 294 QHI--AGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGL 351
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L L + DE L L NLE LNL S + DE L L + LK L ++ TQ+G
Sbjct: 352 TYLGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVAGTQLGD 411
Query: 341 SGLRHLSGLTNLESINLSFTGI 362
L+ L NL+S+N++ T I
Sbjct: 412 DSFLELAKLPNLKSMNVANTSI 433
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 145/285 (50%), Gaps = 4/285 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L+ + T G + A +++L++L L YL L ++D+ + K+ S++ L L
Sbjct: 104 LSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQGLFL 163
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+TDE L L GL+ L +++L + IGD G+ +L + L ++L ++V GL
Sbjct: 164 RRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVTDEGLVK 223
Query: 346 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L+ L L+SIN ++ T I+ +++ L +L++L D +I D +A L L+ L L
Sbjct: 224 LTSLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLR 282
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKT 463
+ G +T G ++ K L E+ + D G+K I L ++T +++S+ C L + +
Sbjct: 283 IRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE-CRLASPEG 341
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ + LTGL L + ++ L L NL L L+S VT
Sbjct: 342 IAQLGELTGLTYLGLWETKTNDETLSGFGDLINLEELNLKSTSVT 386
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 166/379 (43%), Gaps = 31/379 (8%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + ++ +G+ N K G+ NL L KL+ L +
Sbjct: 84 NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 142
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
ITD +K L +++ L + + VTD G+ L GLS
Sbjct: 143 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLS---------------------- 180
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
KL ++L + A +DSL+ + +L + L + +++D+G K + + LK +N
Sbjct: 181 ----KLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSINFN 235
Query: 287 F-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+ I + L LE+L D I DE + L GL LK L + V G++H
Sbjct: 236 YCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQH 295
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD 404
++G L L + + D L+ ++ L ++ +++ + R + G+A L LTGLT+L
Sbjct: 296 IAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGLTYLG 355
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L+ + D + + NL L + +TD + + + L LN++ L D +
Sbjct: 356 LWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVA-GTQLGDDSF 414
Query: 465 ELISGLTGLVSLNVSNSRI 483
++ L L S+NV+N+ I
Sbjct: 415 LELAKLPNLKSMNVANTSI 433
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 25/244 (10%)
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+E L HL G+ N + GI D G+ NLT L LK L L+DT + L+ L +
Sbjct: 98 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
++ + L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217
Query: 412 DSGAAYLR-------NFK-----NLRSLEICGGGLT------------DAGVKHIKDLSS 447
D G L NF N ++++ G T D + +K LS
Sbjct: 218 DEGLVKLTSLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSK 277
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 278 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRL 336
Query: 508 TAND 511
+ +
Sbjct: 337 ASPE 340
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
L L+ + T G I D+G L + L+ L + +TD +K L S+
Sbjct: 101 LQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQG 160
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
L L + +TD+ LEL++GL+ L ++++ NS I AG+ L +K L + LE KVT
Sbjct: 161 LFL-RRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVTDE 219
Query: 511 DIKRLQS 517
+ +L S
Sbjct: 220 GLVKLTS 226
>gi|168704615|ref|ZP_02736892.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 294
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 2/250 (0%)
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
GS+ L L +I D L L +L L+L + D GL LT L L LS T+
Sbjct: 47 GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
V +GL+ ++ LT+LE + L T ++D + +L L L L L +ITD + L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
GLT L L GA+IT G + SL + G +++AG+K I SL +L LS+ C
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSE-C 225
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+TD L+ ++ L L +L++ +++T AG++ L LK L+ L L S +VT +K +++
Sbjct: 226 KITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Query: 518 RDLPNLVSFR 527
LP + F+
Sbjct: 286 A-LPKCLVFK 294
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 1/239 (0%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
GS+ L L +++D ++ + L VL+L +++D L L L L L
Sbjct: 47 GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+ D GL ++ L +L+ L L +T V +G+ L L L + L T I+D + + +A L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L +L LD +IT GL + ++ G L L G I+++G + FK+LR L++
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECK 226
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
+TD G+K + L LT L+L + +TD ++ ++ L L L+++++++T AG++ ++
Sbjct: 227 ITDGGLKELAALDKLTTLHL-EKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 112/219 (51%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L + + L +L+L V+ A L L++ L L L+R +++D G + +K+ L+ L L
Sbjct: 67 LAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAGLKDVAKLTHLEKLAL 126
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+TD + L L L L L I D N+ L L L L ++ GL+
Sbjct: 127 DETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAKITGVGLKQ 186
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
++ + S+ LS T IS+ L+++A SL+ L L +ITD GL L +L LT L L
Sbjct: 187 VAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHL 246
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
++TD+G L + K L+ L + +TDAGVK I++
Sbjct: 247 EKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 26/253 (10%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I D+D+K L+ +L L + ++V+D+G+ LT
Sbjct: 59 IADADLKELAAFKHLAVLSLYDTQVSDAGLKE--------------------------LT 92
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
S + LT L L VT A L ++ L L L L+ ++D G + + L L L
Sbjct: 93 SSKGLTELLLSRTKVTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMG 152
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+ITD ++ L L +L LD I GL + + L LS T + +GL+ ++
Sbjct: 153 TKITDAAFKNVAKLKGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIA 212
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+L + LS I+DG L++LA L L +L+L+ Q+TD G+ +L SL L L L
Sbjct: 213 AFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTS 272
Query: 408 ARITDSGAAYLRN 420
++TD+G +RN
Sbjct: 273 TQVTDAGVKTIRN 285
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 1/233 (0%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L LEG + A L L+A L L+L Q+SD G ++ + L L L ++TD
Sbjct: 52 LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L + LT+LE L LD + D G+ L L L L L T++ + ++++ L L +
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ L I+ L+++A + SL L I++ GL + + L L L +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
L L +L + +TDAGVK + L L +L+L+ + +TD ++ I
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLT-STQVTDAGVKTI 283
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 9/237 (3%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++ + L G+ + D+ L L +L L + Q+SD GL+ L LT L R
Sbjct: 48 SVIELWLEGTKIADADLKELAAFKHLAVLSL-YDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMKP 175
+T G+K A L +L KL L+ G+ L L +L L W ITD+ K
Sbjct: 107 -VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSEL---WLMGTKITDAAFKN 162
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
++ L L +L++ +K+T G+ + + +++ + I + + + L +L
Sbjct: 163 VAKLKGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEI--AAFKSLRIL 220
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L C +T L L+AL L L+L + Q++D G + + + LKVL+L ++TD
Sbjct: 221 QLSECKITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTD 277
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TD+ ++ L +L + +I+ GL+ + + SL + I+ G
Sbjct: 150 LMGTKITDAAFKNVAKLKGLTTLRLDGA-KITGVGLKQVAAIDGFHSL-YLSGTDISEAG 207
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K A +L L L C GGL L L KL +L+++ +TD+ +K L+ L LK
Sbjct: 208 LKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQ-VTDAGVKSLASLKKLK 266
Query: 184 SLQISCSKVTDSGIAYLK 201
L ++ ++VTD+G+ ++
Sbjct: 267 VLHLTSTQVTDAGVKTIR 284
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 24/214 (11%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFR--DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
+S EL S+ LTE+ L + D L+D+ ++ + L +
Sbjct: 83 VSDAGLKELTSSKGLTELLLSRTKVTDAGLKDV-----------------AKLTHLEKLA 125
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA-ITAQ 122
L + VTD+G+ L L L + +I+D +++ L LT+L R + A IT
Sbjct: 126 LDETAVTDAGIGELVPLKRLSEL-WLMGTKITDAAFKNVAKLKGLTTL--RLDGAKITGV 182
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
G+K A + L L GL + L L + C ITD +K L+ L L
Sbjct: 183 GLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECK-ITDGGLKELAALDKL 241
Query: 183 KSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
+L + ++VTD+G+ L L V+ + + +
Sbjct: 242 TTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQV 275
>gi|283778672|ref|YP_003369427.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
gi|283437125|gb|ADB15567.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
Length = 450
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 138/254 (54%), Gaps = 2/254 (0%)
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D+G + ++G+++ L+L +++TD L L + ++ L L S + GL L L +
Sbjct: 193 DEGVDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVD 252
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L+ L L + L+ L L S+ L FT ++D L KL + L +L LDA ++T
Sbjct: 253 LEYLSLKQLPIDDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVT 312
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
D G+ + ++ L L + ++ G ++L +LR L + G L D ++H+ L +
Sbjct: 313 DEGMLEVAKISTLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLEN 372
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+ +L L + N+TDK +E + G+T L +L +S + +T + L +++L+++ L +V
Sbjct: 373 IEILGLD-HTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEV 431
Query: 508 TANDIKRLQSRDLP 521
+A+ +RL+ R+LP
Sbjct: 432 SADGAERLR-RELP 444
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 107/218 (49%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L + ++ L L ++ L +L+ L L YL+L + + D ++ + L L L
Sbjct: 223 LAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQLPIDDRDLQELPEFPKLMSLGL 282
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
F E+TD L L L++L LD+ + DEG++ + + L+ L + TQV G H
Sbjct: 283 DFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAKISTLRSLFMPATQVKGPGFSH 342
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L L +L ++L + D +L+ L GL +++ L LD +TD + L +T L L L
Sbjct: 343 LMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHTNVTDKQIEQLVGMTRLKTLWL 402
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+TD L ++L+++ + G ++ G + ++
Sbjct: 403 SKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLR 440
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 5/184 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L Q P ++D+ + + + L+S+ L ++VTD+GL L + L +L +
Sbjct: 253 LEYLSLKQLP-IDDRDLQEL-PEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLD-AT 309
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G+ + +S L SL F + G L +L L L+ L +L
Sbjct: 310 RVTDEGMLEVAKISTLRSL-FMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLV 368
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
GL +E L + N +TD ++ L G+T LK+L +S + VTD I L + +++
Sbjct: 369 GLENIEILGLDHTN-VTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLH 427
Query: 213 CSMI 216
S +
Sbjct: 428 GSEV 431
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 29/237 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L GSDVTD+ L L ++ L F ++S GGL L L +L LS + I +
Sbjct: 210 LEGSDVTDAVLPKLAKIPEIKRL-FLGSTKLSGGGLATLAPLVDLEYLSLK-QLPIDDRD 267
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC--ITDSDMKPLSGLTN 181
++ L+ L L+ GL L L++L W + +TD M ++ ++
Sbjct: 268 LQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTL---WLDATRVTDEGMLEVAKIST 324
Query: 182 LKSLQISCSKVTDSG------IAYLKGLSISSVIF--ILCSMIIRLFCLHVF-------- 225
L+SL + ++V G +A L+ LS+ V + ++ L + +
Sbjct: 325 LRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHTNVT 384
Query: 226 ------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
L + +L L L VT ++SLS + SL + L+ ++S DG E+ +
Sbjct: 385 DKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLRR 441
>gi|290980799|ref|XP_002673119.1| predicted protein [Naegleria gruberi]
gi|284086700|gb|EFC40375.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 105/427 (24%), Positives = 203/427 (47%), Gaps = 22/427 (5%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGL--EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L L++ +NL+ ++ ++GG E L + L L+ N+ I G K L
Sbjct: 5 LPFLENVANLRVIE-------NEGGFNCEILDSMKELKKLNIEFNSKIDPSGFKYICSLE 57
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLN--IKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L + C + G K L L+SL + N I K + + LK L I+
Sbjct: 58 QLTDLYMTFC---YFGFDIAKHLPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIAN 114
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS 249
+ + G Y+ GL + + I + I F++ +++LT L + G +
Sbjct: 115 NNIGPEGAKYISGLEQLTFLNIRANEITMDGA--KFISEMKQLTGLKIVGNNICDEGAKF 172
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESL 307
+S + L L++ + ++G + S++ +++ L++GFN I D +C +K LT+L
Sbjct: 173 ISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDIGFNSINDGVKCFGEMKQLTDL--- 229
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
N++SC IG +G ++ L L +++ + G H+S + NL +++S I D +
Sbjct: 230 NVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGV 289
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+ ++ ++ L LN+ + IT G+ + + LT+L + I + A + K+L L
Sbjct: 290 QSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQL 349
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
I + D G K I ++ LT L++ N + D+ ++ +SG+ L LN ++ I+ G
Sbjct: 350 SIYHNAVGDEGAKFISEMEQLTFLDIGYN-EIGDEGVKALSGMKQLTRLNAVDNNISDEG 408
Query: 488 LRHLKPL 494
++++ +
Sbjct: 409 EKYIREM 415
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 172/396 (43%), Gaps = 14/396 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + SG ++ L L FC D +HL L +LT L N I +G K
Sbjct: 43 SKIDPSGFKYICSLEQLTDLYMTFCYFGFDIA-KHLPSLKSLTYL-LITGNYIGVEGAKY 100
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L +L + G + GL +L LNI+ N IT K +S + L L+
Sbjct: 101 IGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIR-ANEITMDGAKFISEMKQLTGLK 159
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQKLTLLNLEGCPVTAA 245
I + + D G ++ G+ + + I + I +V + +++KL + G
Sbjct: 160 IVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDI----GFNSIND 215
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+ + L LN+N C + DG + S L L++ N IT +H+ + NL
Sbjct: 216 GVKCFGEMKQLTDLNVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLI 275
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L++ I D G+ +++ + L L +S + G++++ + NL + ++ I +
Sbjct: 276 KLDISDNRIRDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEK 335
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
S +++ + L L++ + D G ++ + LT LD+ I D G L K L
Sbjct: 336 SANQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLT 395
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L ++D G K+I++ +NL+ + ++ D
Sbjct: 396 RLNAVDNNISDEGEKYIRE------MNLADHVDIYD 425
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 5/193 (2%)
Query: 314 IGDEGLVN---LTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
I +EG N L + LK L + ++++ SG +++ L L + ++F +
Sbjct: 17 IENEGGFNCEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKH 76
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L L SL L + I G + + L L + I GA Y+ + L L I
Sbjct: 77 LPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNI 136
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+T G K I ++ LT L + N N+ D+ + ISG+ L +L+++++ I G +
Sbjct: 137 RANEITMDGAKFISEMKQLTGLKIVGN-NICDEGAKFISGMKQLTNLDIASNNIGENGAK 195
Query: 490 HLKPLKNLRSLTL 502
++ + N+R L +
Sbjct: 196 YVSEMMNIRKLDI 208
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ +L+ +D+S + + D+G+ + + + L L+ + I I+ G++++ + NLT L
Sbjct: 269 SQMKNLIKLDISDNRIRDNGVQSISEMNQLTELNVS-SIDITPIGIQYICKMDNLTYLII 327
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I + + + +L +L + G + + +L L+I + N I D +
Sbjct: 328 AHNN-IGEKSANQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGY-NEIGDEGV 385
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
K LSG+ L L + ++D G Y++ ++++ + I
Sbjct: 386 KALSGMKQLTRLNAVDNNISDEGEKYIREMNLADHVDI 423
>gi|149177419|ref|ZP_01856023.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148843752|gb|EDL58111.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 375
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 4/290 (1%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
++ G + A L ++ L L L LN ++D E K+ +L+ L+L + ++
Sbjct: 77 VDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCSLNNKA 136
Query: 295 LVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ +L GL+ L++L L + I D+ + ++ L NLK L L V GL L L LE
Sbjct: 137 ISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLE 196
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITD 412
+ L+ T + D L L LK L QI+D GLA + L +DL + ++D
Sbjct: 197 ELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSD 256
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+G +L L+ L + GLTDAGV+ ++ L+SL LNL N LT+ L+ + +
Sbjct: 257 AGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLD-NTRLTNAGLKYLKDMQK 315
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
L L++ ++ ++ GL+HL+PL +L+ L L VT + L+ + LPN
Sbjct: 316 LEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELKKK-LPN 364
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 141/266 (53%), Gaps = 3/266 (1%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
G + ++ ++ D ++ + + L+ L L ITD L + +T LE+L+L +C
Sbjct: 72 GYVIEVDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCS 131
Query: 314 IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
+ ++ + LTGL LK L LS ++ + + ++ LTNL+++ L F +S L +L
Sbjct: 132 LNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKD 191
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
L+ L+ L L + D GLA LT L L +I+D G A L +++
Sbjct: 192 LNKLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSEN 251
Query: 433 G-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
L+DAG+KH+ L L LNL + LTD +E + GLT L LN+ N+R+T+AGL++L
Sbjct: 252 SLLSDAGMKHLSGLGKLKKLNLWR-VGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYL 310
Query: 492 KPLKNLRSLTLESCKVTANDIKRLQS 517
K ++ L L L S V+ +K L+
Sbjct: 311 KDMQKLEFLHLGSTAVSDEGLKHLEP 336
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 29/311 (9%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
+DF +I D L+ + GLS+L SL IT +++ + L LDL C+
Sbjct: 76 EVDFR-GTKIDDAALKEIAGLSHLRSL-LLNETPITDAALESVGKVTTLENLDLRNCSLN 133
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204
+ + L GL KL++L + + I D M ++ LTNLK+L + V+ G++ LK L+
Sbjct: 134 NKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLN 193
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
KL L L V L +L+ L L++
Sbjct: 194 --------------------------KLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQN 227
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
Q+SD+G F+KI L+ ++L N + +D + HL GL L+ LNL G+ D G+ L
Sbjct: 228 QISDEGLAVFAKIPQLEEIDLSENSLLSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQ 287
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
GL +L+ L L +T++ ++GL++L + LE ++L T +SD L+ L L+SLK L L
Sbjct: 288 GLTSLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTR 347
Query: 384 RQITDTGLAAL 394
+T+ G+A L
Sbjct: 348 TAVTEKGVAEL 358
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 28/292 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I D+ +K ++GL++L+SL ++ + +TD+ + S+ V T
Sbjct: 84 IDDAALKEIAGLSHLRSLLLNETPITDAALE-----SVGKV------------------T 120
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLG 286
+L+ L L N C + + L+ L L L L+ + DD +++ +LK L L
Sbjct: 121 TLENLDLRN---CSLNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLD 177
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
F ++ + L LK L LE L L + D+GL LT LK LS Q+ GL
Sbjct: 178 FLWVSGDGLSQLKDLNKLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVF 237
Query: 347 SGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+ + LE I+LS + SD ++ L+GL LK LNL +TD G+ L LT L L+L
Sbjct: 238 AKIPQLEEIDLSENSLLSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNL 297
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
R+T++G YL++ + L L + ++D G+KH++ L+SL L L++
Sbjct: 298 DNTRLTNAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTA 349
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 153/335 (45%), Gaps = 45/335 (13%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
FR + D L + G+ S L S+ L+ + +TD+ L + + L++LD
Sbjct: 79 FRGTKIDDAALKEIAGL------------SHLRSLLLNETPITDAALESVGKVTTLENLD 126
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
C +++ + +L GLS L +L N+ I M L NL L L+ G
Sbjct: 127 LRNC-SLNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDG 185
Query: 148 LVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS 206
L LK L KLE L + + D D + L+ LK ++S ++++D G+A
Sbjct: 186 LSQLKDLNKLEELYL--AKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLA-------- 235
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ 265
VF + +L ++L E ++ A + LS LG L LNL R
Sbjct: 236 -----------------VF-AKIPQLEEIDLSENSLLSDAGMKHLSGLGKLKKLNLWRVG 277
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
L+D G E + SL+ LNL +T+ L +LK + LE L+L S + DEGL +L L
Sbjct: 278 LTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPL 337
Query: 326 CNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSF 359
+LK L+L+ T V G+ L L N E I L +
Sbjct: 338 TSLKELKLTRTAVTEKGVAELKKKLPNTE-IQLKY 371
>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]
Length = 600
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 219/467 (46%), Gaps = 65/467 (13%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NL+ L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-----------GLSI 205
L L++ C +TD+ +K L ++NLK L IS + VT GI+ L GL +
Sbjct: 113 LTELDLSRCWKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPV 172
Query: 206 SSVIFILCSMIIRLFCLHVF-----------LTSLQKLTLLNLEGCPVTAA-------CL 247
+ I + +L L ++ + L+ LNL VT CL
Sbjct: 173 TDHNLIALQALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECL 232
Query: 248 -----------DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
+ S+L SL L L+ S + E S + L ++ + +
Sbjct: 233 HMNMCTIVSEPKTHSSLASLKKLVLSGANFSAE-TEALSFTNKSSITYLDVSKTSLQNFS 291
Query: 297 HLKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLE 353
L+ + NLE L+L S GD+ G V G NL+ L +S+T++ S+G+ +L+G + LE
Sbjct: 292 FLETMINLEHLDLSSTAFGDDSVGFVACVG-ENLRNLNVSETKITSAGVGNLAGHVPQLE 350
Query: 354 SINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+ +LS T + D S+ ++ + +K+L+L +TS+ G +
Sbjct: 351 TFSLSQTFVDDLSILLISTMMPCVKALDL-----------GMTSIRGFILQQSPQEEQAE 399
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
A L++ +L++L + L D + + L+ LT L+L ++ +LTD TL +S L
Sbjct: 400 PSLAALQSLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSSLPN 458
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 518
LVSL V ++ +TS GL +P K LR+L L+ C +T +DI L R
Sbjct: 459 LVSLGVRDAVLTSNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLCKR 505
>gi|434405931|ref|YP_007148816.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260186|gb|AFZ26136.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 451
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 202/362 (55%), Gaps = 43/362 (11%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSISSV----IFILCSMI----IR 218
SD+KPLS LTNL +L +S ++++D S + L + +SS I +L ++ I
Sbjct: 84 SDIKPLSNLTNLTTLDLSENQISDIKPLSNLTNLTDIDLSSNQISDIKVLSNLTNLTDID 143
Query: 219 LFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
L + L++L LT+L+L ++ + LS L +L + L+ Q+SD E
Sbjct: 144 LSKNQISDIKVLSNLTNLTVLDLSDNQISDIKV--LSNLTNLTSVKLSENQISD--IEVL 199
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S + +L VL+LG+N+I+D + L LTNL L+L + IGD + L+ L NL L L
Sbjct: 200 SNLTNLTVLDLGYNQISD--IKVLSNLTNLTYLSLWNNQIGDIKV--LSNLTNLTSLSLW 255
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
D Q+ S ++ LS LTNL S+ L ISD ++ L+ L++L L L QI D + L
Sbjct: 256 DNQI--SDIKPLSNLTNLTSLYLWDNQISD--IKPLSNLTNLTYLYLWDNQIAD--IKPL 309
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
++LT LT LDL +I D L N +L SL++ + A +K + +L++LT L+L
Sbjct: 310 SNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKNQI--ADIKPLSNLTNLTSLSLW 365
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVTANDIK 513
+N ++ +EL+S LT L SL++S ++I+ +KPL NL +LT ++ + +DIK
Sbjct: 366 RNQSI---DIELLSNLTNLTSLDLSENQIS-----DIKPLSNLTNLTDIDLSENQISDIK 417
Query: 514 RL 515
L
Sbjct: 418 PL 419
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 217/422 (51%), Gaps = 62/422 (14%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L S+++D + L + +NL +LD +S+ + ++ LSNLT+L+ ++
Sbjct: 76 LNLESSEISD--IKPLSNLTNLTTLD------LSENQISDIKPLSNLTNLTDIDLSSNQI 127
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+K + L NL +DL + + ++K L L +L + + SD+K LS LTN
Sbjct: 128 SDIKVLSNLTNLTDIDLSK-----NQISDIKVLSNLTNLTVLDLSDNQISDIKVLSNLTN 182
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L S+++S ++++D + L++L LT+L+L
Sbjct: 183 LTSVKLSENQISDIEV----------------------------LSNLTNLTVLDLGYNQ 214
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
++ + LS L +L YL+L Q+ D + S + +L L+L N+I+D + L L
Sbjct: 215 ISDIKV--LSNLTNLTYLSLWNNQIGD--IKVLSNLTNLTSLSLWDNQISD--IKPLSNL 268
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
TNL SL L I D + L+ L NL L L D Q+ ++ LS LTNL ++LS
Sbjct: 269 TNLTSLYLWDNQISD--IKPLSNLTNLTYLYLWDNQIA--DIKPLSNLTNLTDLDLSKNQ 324
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
I G ++ L+ L+SL SL+L QI D + L++LT LT L L+ + D L N
Sbjct: 325 I--GDIKPLSNLTSLTSLDLSKNQIAD--IKPLSNLTNLTSLSLWRNQSID--IELLSNL 378
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
NL SL++ ++D +K + +L++LT ++LS+N ++D ++ +S LT L L + N+
Sbjct: 379 TNLTSLDLSENQISD--IKPLSNLTNLTDIDLSEN-QISD--IKPLSNLTKLEDLQIQNN 433
Query: 482 RI 483
I
Sbjct: 434 PI 435
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 34/160 (21%)
Query: 48 WMDVIA-----SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
W + IA S ++L +DLS + + D + L + ++L SLD + QI+D ++ L
Sbjct: 299 WDNQIADIKPLSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKN-QIAD--IKPL 353
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+NLTSLS RN +I ++ + L NL LDL + ++K L L +L
Sbjct: 354 SNLTNLTSLSLWRNQSI---DIELLSNLTNLTSLDLS-----ENQISDIKPLSNLTNL-- 403
Query: 163 KWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTD 194
TD SD+KPLS LT L+ LQI + + D
Sbjct: 404 ------TDIDLSENQISDIKPLSNLTKLEDLQIQNNPILD 437
>gi|290979019|ref|XP_002672232.1| predicted protein [Naegleria gruberi]
gi|284085807|gb|EFC39488.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 189/400 (47%), Gaps = 15/400 (3%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMK 156
E L + L L+ N+ I G K L L L + C I L +LK L
Sbjct: 26 EILDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 85
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
L + N I K + + LK L I+ + + G ++ GL +++ I + I
Sbjct: 86 L----LITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKHISGLEQLTILNIRANEI 141
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
F++ +++LT+LN+ G + +S + L L+++ + ++G + S+
Sbjct: 142 TVDGA--KFISEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSE 199
Query: 277 IGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+ ++ LN+GFN I D EC +K LT+L N++S IG G+V ++ L L ++
Sbjct: 200 MLNITKLNIGFNSINDCVECFGKMKQLTDL---NVNSSCIGLCGIVFISSFNQLTHLSIA 256
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ + H+S + N+ +++S I D ++ ++ ++ L LN+ + IT G+ +
Sbjct: 257 SNSISNYEASHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYI 316
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+ LT+L + I GA + K+L L I + D G K I ++ LT LN+
Sbjct: 317 CKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIG 376
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
N + D+ ++ +SG+ L LN ++ I+ G +++ +
Sbjct: 377 SN-EIGDEGVKALSGMKQLTELNTVDNNISEEGENYIREM 415
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 147/318 (46%), Gaps = 15/318 (4%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +H+ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 117 IGPEGAKHISGLEQLTILNIRAN-EITVDGAKFISEMKQLTVLNIIGNDICDEGAKFISG 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-----SGIAYLKGLSISSV 208
+ +L +L+I N I ++ K +S + N+ L I + + D + L L+++S
Sbjct: 176 MKQLTNLDIS-VNNIGENGAKYVSEMLNITKLNIGFNSINDCVECFGKMKQLTDLNVNSS 234
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
LC + VF++S +LT L++ ++ +S + ++ L+++ ++ D
Sbjct: 235 CIGLCGI--------VFISSFNQLTHLSIASNSISNYEASHISQMKNVIKLDISDNRIGD 286
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G + S++ L LN+ +IT + ++ + NL L + IG +G ++ + +L
Sbjct: 287 NGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHL 346
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L + + VG G + +S + L +N+ I D ++ L+G+ L LN I++
Sbjct: 347 AQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISE 406
Query: 389 TGLAALTSLTGLTHLDLF 406
G + + H ++
Sbjct: 407 EGENYIREMNLTDHTGIY 424
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 91/400 (22%), Positives = 170/400 (42%), Gaps = 24/400 (6%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFC---IQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S++ SG ++ L L FC + I+ +HL L +LT L N I +G
Sbjct: 43 SNIHPSGFKYICSLEQLTDLYMTFCYFRLPIA----KHLPSLKSLTYL-LITGNYIGVEG 97
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
K + L +L + G ++ GL +L LNI+ N IT K +S + L
Sbjct: 98 AKYIGEMKQLKQLHIANNNIGPEGAKHISGLEQLTILNIR-ANEITVDGAKFISEMKQLT 156
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I + + D G ++ G+ + + I + I +V + + +T LN+ G
Sbjct: 157 VLNIIGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYV--SEMLNITKLNI-GFNSI 213
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
C++ + L LN+N + G S L L++ N I++ H+ + N
Sbjct: 214 NDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKN 273
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
+ L++ IGD G+ +++ + L L +S + G++++ + NL + ++ I
Sbjct: 274 VIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIG 333
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
+++ + L L++ + D G ++ + LT L++ I D G L K
Sbjct: 334 VKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQ 393
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
L L +++ G +I+++ NLTD T
Sbjct: 394 LTELNTVDNNISEEGENYIREM------------NLTDHT 421
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 135/312 (43%), Gaps = 37/312 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++ G+D+ D G + L +LD + I + G +++ + N+T L+
Sbjct: 150 SEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMLNITKLNI 208
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N+ ++ F + L L++ G+V + +L L+I N I++ +
Sbjct: 209 GFNS--INDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSI-ASNSISNYEA 265
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+S + N+ L IS +++ D+G+ SIS + +LT
Sbjct: 266 SHISQMKNVIKLDISDNRIGDNGVQ-----SIS---------------------EMNQLT 299
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LN+ +T + + + +L YL + + G + S++ L L++ N + DE
Sbjct: 300 ELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDE 359
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ + L LN+ S IGDEG+ L+G+ L L D + G + +
Sbjct: 360 GAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISEEGENY------IR 413
Query: 354 SINLS-FTGISD 364
+NL+ TGI D
Sbjct: 414 EMNLTDHTGIYD 425
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 370 LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
L + LK LNL+ I +G + SL LT L + A +L + K+L L
Sbjct: 28 LDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTYLL 87
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
I G + G K+I ++ L L+++ N N+ + + ISGL L LN+ + IT G
Sbjct: 88 ITGNYIGVEGAKYIGEMKQLKQLHIANN-NIGPEGAKHISGLEQLTILNIRANEITVDGA 146
Query: 489 RHLKPLKNLRSLTLESCKVTANDI 512
+ + +K L L + NDI
Sbjct: 147 KFISEMKQLTVLN-----IIGNDI 165
>gi|46447569|ref|YP_008934.1| hypothetical protein pc1935 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401210|emb|CAF24659.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 504
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 133/249 (53%), Gaps = 14/249 (5%)
Query: 230 QKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-G 286
+ L L CP +TAA L L L +L +L+LN C L+D G + + +LK LNL G
Sbjct: 250 KNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSG 309
Query: 287 FNEITDECLVHLKGLTNLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSD-TQVGSSG 342
+TD L HL LT L+ LNL C + D GL +L L LK L LS ++ +G
Sbjct: 310 HGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAG 369
Query: 343 LRHLSGLTNLESINLSF-----TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
L HL LT L+ +NLS G++ L L L++L+ LNL +TD LA LT L
Sbjct: 370 LAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPL 429
Query: 398 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 455
L +LDL +TD+G A+L L+ L + LT+AG+ H+ L++L LNLS
Sbjct: 430 EALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSG 489
Query: 456 NCNLTDKTL 464
NLTD L
Sbjct: 490 CSNLTDDGL 498
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 13/241 (5%)
Query: 290 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLS 347
+T L +L+ L L+ L+L+ C + D GL +L L LK L LS + +GL HLS
Sbjct: 263 LTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLS 322
Query: 348 GLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 403
LT L+ +NLS ++D L L L +LK LNL + T GLA L LT L HL
Sbjct: 323 PLTALQHLNLSECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHL 382
Query: 404 DL-----FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
+L GA + +G A+LR L+ L + G+TD + H+ L +L L+LS +
Sbjct: 383 NLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWH 442
Query: 459 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQ 516
LTD L ++ L L LN+S ++T+AGL HL PL L+ L L C +T + + RL+
Sbjct: 443 LTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLR 502
Query: 517 S 517
Sbjct: 503 P 503
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 148/300 (49%), Gaps = 31/300 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGL-SISSVIFILC 213
K+E+LN +TD + L NLK+L C +T +G+AYL+ L ++ + C
Sbjct: 226 KIEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYC 285
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC---QLSDD 269
+ H L L L LNL G +T A L LS L +L +LNL+ C +L+D
Sbjct: 286 YNLTDAGLAH--LAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDA 343
Query: 270 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
G + +LK LNL ++ T L HL+ LT L+ LNL CG GL
Sbjct: 344 GLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGAGL--------- 394
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQIT 387
S+GL HL LT L+ +NLS+ G++D L L L +L+ L+L + +T
Sbjct: 395 ----------ASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLT 444
Query: 388 DTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 445
D GLA L L L HL+L ++T++G A+L L+ L + G LTD G+ ++
Sbjct: 445 DAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLRPF 504
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 151/301 (50%), Gaps = 39/301 (12%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL +L FR+ +TA G+ L+ L LDL C
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--CS-KVTDSGIA 198
+ GL +L L+ L+ LN+ +TD+ + LS LT L+ L +S C+ K+TD+G+A
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLA 346
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLF 257
+L+ L L LNL C T A L L L +L
Sbjct: 347 HLR--------------------------PLVALKYLNLSRCSKFTGAGLAHLRPLTALQ 380
Query: 258 YLNLNRC-----QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
+LNL+ C L+ G + +L+ LNL + +TD+ L HL L L+ L+L +C
Sbjct: 381 HLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNC 440
Query: 313 G-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRK 369
+ D GL +L L L+ L LS Q+ ++GL HL LT L+ +NLS + ++D L +
Sbjct: 441 WHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLAR 500
Query: 370 L 370
L
Sbjct: 501 L 501
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 30/221 (13%)
Query: 304 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 360
+E+LN + + D L+ L NLK L + ++GL +L L L+ ++L++
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286
Query: 361 GISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
++D L LA L +LK LNL +TD GLA L+ LT L HL+L
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLS------------- 333
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
E C LTDAG+ H++ L +L LNLS+ T L + LT L LN+S
Sbjct: 334 --------ECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLS 385
Query: 480 N-----SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ + SAGL HL+PL L+ L L C VT +++ L
Sbjct: 386 GCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHL 426
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQ 122
S T +GL HL+ + LQ L+ + C I G GL HLR L+ L L+ +T
Sbjct: 363 SKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSW-CGVTDD 421
Query: 123 GMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L L LDL C + GL +L L+ L+ LN+ C+ +T++ + L LT
Sbjct: 422 ELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTA 481
Query: 182 LKSLQIS-CSKVTDSGIAYLKGL 203
L+ L +S CS +TD G+A L+
Sbjct: 482 LQHLNLSGCSNLTDDGLARLRPF 504
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++LS VTD L HL LQ LD + C ++D GL HL L L L+ +
Sbjct: 406 TALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKC 465
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L L L+L C+ +
Sbjct: 466 DQLTNAGLAHLIPLTALQHLNLSGCSNL 493
>gi|290974552|ref|XP_002670009.1| predicted protein [Naegleria gruberi]
gi|284083563|gb|EFC37265.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 140/278 (50%), Gaps = 1/278 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ +Q L +LN+ G + + +S + L +LN++ + DG + ++ L LN
Sbjct: 82 YISEMQYLAILNMLGNNIGNEGVKYISGMKQLTHLNVSENNIGLDGVKYIVEMKQLTHLN 141
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G N I DE + +T L L + CGI EG+ +++ L L L +S + +
Sbjct: 142 IGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISSNMLYDDSTK 201
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++SG+ L + + I D + L + L +N+ ++T G+ LT L LT +D
Sbjct: 202 YISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLTGLDKLTEID 261
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ I D+GA Y+ K L +L++ + + G K+I ++ LT+L L +N N+ +
Sbjct: 262 ISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWKN-NIRGEGA 320
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ IS L L L++S + I G +++ + L +L +
Sbjct: 321 KYISKLEKLTELDISENHIDEKGAKYISEMSQLNALDI 358
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 136/274 (49%), Gaps = 2/274 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L+++T L +E C L L L L+++ + ++G + S++ L +LN+ N
Sbjct: 39 LERVTTLQVEQSDPLFDC-KKLGLLKQLTQLDIDGNNIDEEGAKYISEMQYLAILNMLGN 97
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I +E + ++ G+ L LN+ IG +G+ + + L L + +G G + +
Sbjct: 98 NIGNEGVKYISGMKQLTHLNVSENNIGLDGVKYIVEMKQLTHLNIGQNSIGDEGAKLIGE 157
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+T L + + + GIS ++ ++ L L LN+ + + D ++ + LT+L +
Sbjct: 158 MTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHDN 217
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
I D GA +L K L + I LT GVK + L LT +++S N N+ D + IS
Sbjct: 218 NIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLTGLDKLTEIDISSN-NIGDNGAKYIS 276
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ L +L+VS++ I G +++ +K L LTL
Sbjct: 277 EMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTL 310
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 155/348 (44%), Gaps = 26/348 (7%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV- 224
N I + K +S + L L + + + + G+ Y+ G+ +L L+V
Sbjct: 73 NNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMK-------------QLTHLNVS 119
Query: 225 ----------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
++ +++LT LN+ + + + L L + C +S +G +
Sbjct: 120 ENNIGLDGVKYIVEMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSEGIKHI 179
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
SK+ L LN+ N + D+ ++ G+ L L + IGDEG L + L + +
Sbjct: 180 SKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLTGINIW 239
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
++ + G++ L+GL L I++S I D + ++ + L +L++ I + G +
Sbjct: 240 RNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEEGAKYI 299
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
++ LT L L+ I GA Y+ + L L+I + + G K+I ++S L L++S
Sbjct: 300 GNMKQLTILTLWKNNIRGEGAKYISKLEKLTELDISENHIDEKGAKYISEMSQLNALDIS 359
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
N + ++ + I + L L + ++ I H K +K + + L
Sbjct: 360 VNI-IGNQGAKYIKEMKQLTDLLIWDNNIIEQE-EHPKEIKEVSTTPL 405
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 96/445 (21%), Positives = 180/445 (40%), Gaps = 77/445 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +D+ G+++ + G ++ + L L+ I + G++++ G+ LT L+ NN
Sbjct: 64 QLTQLDIDGNNIDEEGAKYISEMQYLAILNM-LGNNIGNEGVKYISGMKQLTHLNVSENN 122
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+K + L L++ + N I D K +
Sbjct: 123 -IGLDGVKYIVEMKQLTHLNIGQ-------------------------NSIGDEGAKLIG 156
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
+T L L I ++ GI ++ + L KLT LN+
Sbjct: 157 EMTQLLDLCIFYCGISSEGIKHI--------------------------SKLDKLTDLNI 190
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ +S + L YL ++ + D+G + K+ L +N+ NE+T E +
Sbjct: 191 SSNMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKF 250
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L GL L +++ S IGD G ++ + L L++SD +G G +++
Sbjct: 251 LTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEEGAKYI----------- 299
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
G++++L L+ K+ I G ++ L LT LD+ I + GA Y
Sbjct: 300 -------GNMKQLTILTLWKN------NIRGEGAKYISKLEKLTELDISENHIDEKGAKY 346
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
+ L +L+I + + G K+IK++ LT L + N + + L
Sbjct: 347 ISEMSQLNALDISVNIIGNQGAKYIKEMKQLTDLLIWDNNIIEQEEHPKEIKEVSTTPLA 406
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTL 502
+N+++++ L + K L+ L L
Sbjct: 407 ETNTKLSTPSLDNTKGLRKLIGLAF 431
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 83/188 (44%), Gaps = 35/188 (18%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
+ Q G+N W + + ++G L+ +D+S +++ D+G ++ + L +LD +
Sbjct: 230 MKQLTGIN-IWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSD 288
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
I + G +++ + LT L+ +NN I +G K + L L +LD+
Sbjct: 289 N-NIGEEGAKYIGNMKQLTILTLWKNN-IRGEGAKYISKLEKLTELDISE---------- 336
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
N I + K +S ++ L +L IS + + + G Y+K + + +
Sbjct: 337 ---------------NHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLTDLL 381
Query: 211 ILCSMIIR 218
I + II
Sbjct: 382 IWDNNIIE 389
>gi|320164611|gb|EFW41510.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 853
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 191/441 (43%), Gaps = 29/441 (6%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL+ LT LS N IT+ + AFAGL L +LDL
Sbjct: 69 QITGIAPSAFTGLTALTVLSLSYNQ-ITSIPVSAFAGLDALTRLDLSSNLITSISASAFP 127
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
L L LN++ N IT +GLT L+ L +S +++T GLS ++I++
Sbjct: 128 SLTALTELNLQG-NLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTLIYLQ 186
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+ I L T L LT L L G +T+ + + L SL L+L ++++
Sbjct: 187 TNQITDLS--PATFTGLAALTELYLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPAS 244
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
F+ + +L L L N+IT+ GLT LE LNL I + L L+ L
Sbjct: 245 AFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLN 304
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLS-----------FTG-------------ISDGSLR 368
L D Q+ S + LT L S++L FTG I+D S
Sbjct: 305 LQDNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSAS 364
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
A L++L L L + QIT+ A T LT LT LDL +IT + LR L
Sbjct: 365 VFASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLY 424
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ +T L++L +L L+ N +T +GLT L +L +S + ITS
Sbjct: 425 LHFNQITSIPASAFTGLTALYVLILAYN-QITSLPTNTFTGLTALNTLTLSFNPITSISA 483
Query: 489 RHLKPLKNLRSLTLESCKVTA 509
L +L L L + ++T+
Sbjct: 484 NTFTDLTSLFFLILNNNQITS 504
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 167/403 (41%), Gaps = 17/403 (4%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GLS +T L + + N IT F GL L +L L + T IH
Sbjct: 165 QITSIAANAFNGLSAVT-LIYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHAS--T 221
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
GL LE+L+++ N IT+ + L+ L L + +++T+ + GL++ ++
Sbjct: 222 FAGLTSLENLDLQ-DNKITEVPASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILN 280
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+ + I + L L LNL+ +T+ + + L +L L+L ++
Sbjct: 281 LQGNQITNI--PETVFADLTALETLNLQDNQITSIPASAFADLTALRSLDLQDNNITSIP 338
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
F+ + +L L L N+ITD LT L L L S I + TGL L
Sbjct: 339 ASVFTGLSALNELKLHTNKITDLSASVFASLTALAVLELQSNQITEISANAFTGLTALTK 398
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+LS Q+ S + + LT L + L F I+ GL++L L L QIT
Sbjct: 399 LDLSSCQITSFSVDAFTSLTALRDLYLHFNQITSIPASAFTGLTALYVLILAYNQITSLP 458
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
T LT L L L IT A + +L L + +T L L
Sbjct: 459 TNTFTGLTALNTLTLSFNPITSISANTFTDLTSLFFLILNNNQITSISANAFAGLPGLKY 518
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
L LS N T L GL +SL++S ++L+P
Sbjct: 519 LVLSDN-PFTTLPPGLFQGLPNGLSLSLSG--------QYLRP 552
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 121/268 (45%), Gaps = 7/268 (2%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L L+ Q++ F+ + +L VL+L +N+IT + GL L L+L S I
Sbjct: 63 LRLSSNQITGIAPSAFTGLTALTVLSLSYNQITSIPVSAFAGLDALTRLDLSSNLITSIS 122
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L L L L + S +GLT L + LS I+ + GLS++
Sbjct: 123 ASAFPSLTALTELNLQGNLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTL 182
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
+ L QITD A T L LT L L G +IT A+ +L +L++ +T+
Sbjct: 183 IYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHASTFAGLTSLENLDLQDNKITEVP 242
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
DLS+LT L L N +T+ +GLT L LN+ ++IT+ L L
Sbjct: 243 ASAFTDLSALTGLTLQDN-QITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALE 301
Query: 499 SLTLESCKVTA------NDIKRLQSRDL 520
+L L+ ++T+ D+ L+S DL
Sbjct: 302 TLNLQDNQITSIPASAFADLTALRSLDL 329
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 168/380 (44%), Gaps = 39/380 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---ISDGGLEHLRGLSNLTSLSF 113
++L + L G+ +T IH + L SL+ N +Q I++ LS LT L+
Sbjct: 202 AALTELYLMGNQITS---IHASTFAGLTSLE-NLDLQDNKITEVPASAFTDLSALTGLTL 257
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+ +N IT AFAGL L L+L+ + T I + L LE+LN++ N IT
Sbjct: 258 Q-DNQITEIPASAFAGLTVLEILNLQGNQITNIPETV--FADLTALETLNLQ-DNQITSI 313
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
+ LT L+SL + + +T + GLS + + + + I L VF SL
Sbjct: 314 PASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDL-SASVF-ASLTA 371
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L +L L+ +T ++ + L +L L+L+ CQ++ + F+ + +L+ L L FN+IT
Sbjct: 372 LAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLHFNQIT 431
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
S+ + TGL L L L+ Q+ S +GLT
Sbjct: 432 --------------SIPASA----------FTGLTALYVLILAYNQITSLPTNTFTGLTA 467
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L ++ LSF I+ S L+SL L L+ QIT A L GL +L L T
Sbjct: 468 LNTLTLSFNPITSISANTFTDLTSLFFLILNNNQITSISANAFAGLPGLKYLVLSDNPFT 527
Query: 412 DSGAAYLRNFKNLRSLEICG 431
+ N SL + G
Sbjct: 528 TLPPGLFQGLPNGLSLSLSG 547
>gi|149918767|ref|ZP_01907254.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
gi|149820368|gb|EDM79784.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
Length = 541
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 136/290 (46%), Gaps = 5/290 (1%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR-LFCLHV 224
+T+ + PL GL +L ++ S +++ YL+ L I +I R LF
Sbjct: 250 TALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLPIDELICDCPRFGDRGLF---- 305
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L L+ L +L LE VT+A L L+ +L L L C L +G + + L+ L
Sbjct: 306 MLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTALAALPRLRRLI 365
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G + D L L +L L L G GD L L NL+ L+L +T V GL
Sbjct: 366 VGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLDLGNTAVSDEGLE 425
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
HL+G+ L + L T ++ L L GLS+L+ L LD + D G+A L L L L
Sbjct: 426 HLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAKLGALRELR 485
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L ITD G A+L +L L + +T GV+ + L L ++NL+
Sbjct: 486 LDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLA 535
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 142/308 (46%), Gaps = 45/308 (14%)
Query: 98 GLEHL-------RGLSNLTSLSFRRNNAITA----------QGMKAFAGLINLVKLDLER 140
GL+HL +G SN TS + R+ I +G+ L L L+LER
Sbjct: 262 GLDHLHRIEWSGQGWSN-TSPQYLRDLPIDELICDCPRFGDRGLFMLRYLEGLQVLELER 320
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
GLV+L LE L ++ C+ ++ L+ L L+ L + + + D
Sbjct: 321 SAVTSAGLVHLAENPALEDLTLRGCDLDSEG-FTALAALPRLRRLIVGPASLLD---GKA 376
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
+GL + L SL++L L L+G AA L+ L +L L+
Sbjct: 377 EGLGL--------------------LVSLRELE-LGLDGFGDRAA--QELAPLVNLERLD 413
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
L +SD+G E + + L+ L L +T L HL+GL+ LE L LD + DEG+
Sbjct: 414 LGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVA 473
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
+L L L+ L L +T + G+ HL+ L++LE +NL+ T ++ + L+ L L+ +N
Sbjct: 474 HLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVN 533
Query: 381 LDARQITD 388
L + D
Sbjct: 534 LAGTRARD 541
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 112/263 (42%), Gaps = 32/263 (12%)
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG------------------- 313
+ +K SL+ L + +T+ L LKGL +L + G
Sbjct: 235 RVAKAKSLQSLAVIDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLPIDELIC 294
Query: 314 ----IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
GD GL L L L+ LEL + V S+GL HL+ LE + L +
Sbjct: 295 DCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTA 354
Query: 370 LAGLSSLKSLNLDARQITD---TGLAALTSLTGLT-HLDLFGARITDSGAAYLRNFKNLR 425
LA L L+ L + + D GL L SL L LD FG D A L NL
Sbjct: 355 LAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFG----DRAAQELAPLVNLE 410
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L++ ++D G++H+ + L L L + +T LE + GL+ L L + ++ +
Sbjct: 411 RLDLGNTAVSDEGLEHLAGMVRLRELEL-HHTRVTRHGLEHLQGLSALEILELDHTDVVD 469
Query: 486 AGLRHLKPLKNLRSLTLESCKVT 508
G+ HL L LR L L++ +T
Sbjct: 470 EGVAHLAKLGALRELRLDNTLIT 492
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 29/248 (11%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L S VT +GL+HL + L+ L C + +
Sbjct: 316 LELERSAVTSAGLVHLAENPALEDLTLRGC--------------------------DLDS 349
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G A A L L +L + + + G L L+ L L + + D + L+ L N
Sbjct: 350 EGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELG-LDGFGDRAAQELAPLVN 408
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L+ L + + V+D G+ +L G+ + + + + R H L L L +L L+
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEH--LQGLSALEILELDHTD 466
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
V + L+ LG+L L L+ ++D G +K+ L+ LNL +T E + L L
Sbjct: 467 VVDEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSAL 526
Query: 302 TNLESLNL 309
LE +NL
Sbjct: 527 PRLEVVNL 534
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 130/320 (40%), Gaps = 31/320 (9%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L F L++L L+++E VT A L L L +L L R + + ++ S
Sbjct: 139 LSAFGARLRELELVDIELDAVTVARLSQLHGLDTLI---LTRVRAEAEALNPLARKISPS 195
Query: 282 VLNLGFNEI-TDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
+ L E+ D +V L L +L L L+ +G ++ + +L+ L + DT +
Sbjct: 196 TVTL--RELDKDSAVVELVTLLRDLHHLRLEGAWVGHNTMLRVAKAKSLQSLAVIDTALT 253
Query: 340 SSGLRHLSGLTNLESINLSFTGIS-----------------------DGSLRKLAGLSSL 376
+ L L GL +L I S G S D L L L L
Sbjct: 254 NYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLPIDELICDCPRFGDRGLFMLRYLEGL 313
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ L L+ +T GL L L L L G + G L LR L + L D
Sbjct: 314 QVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFTALAALPRLRRLIVGPASLLD 373
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
+ + L SL L L + D+ + ++ L L L++ N+ ++ GL HL +
Sbjct: 374 GKAEGLGLLVSLRELELGLD-GFGDRAAQELAPLVNLERLDLGNTAVSDEGLEHLAGMVR 432
Query: 497 LRSLTLESCKVTANDIKRLQ 516
LR L L +VT + ++ LQ
Sbjct: 433 LRELELHHTRVTRHGLEHLQ 452
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+ L+ F D A Q+L P VN L +DL + V+D GL HL
Sbjct: 389 ELGLDGFGDRAAQELA----PLVN-------------LERLDLGNTAVSDEGLEHLAGMV 431
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ L+ + +++ GLEHL+GLS L L + + +G+ A L L +L L+
Sbjct: 432 RLRELELHHT-RVTRHGLEHLQGLSALEILELDHTDVVD-EGVAHLAKLGALRELRLDNT 489
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
G+ +L L LE LN+ +T ++ LS L L+ + ++ ++ D
Sbjct: 490 LITDVGVAHLAKLSDLERLNLA-NTVVTSEGVEVLSALPRLEVVNLAGTRARD 541
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D + L L NL L N A++ +G++ AG++ L +L+L GL +L+GL
Sbjct: 397 DRAAQELAPLVNLERLDLG-NTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLS 455
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
LE L + + + D + L+ L L+ L++ + +TD G+A+L LS
Sbjct: 456 ALEILELDHTDVV-DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLS----------- 503
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
L LNL VT+ ++ LSAL L +NL + D
Sbjct: 504 ---------------DLERLNLANTVVTSEGVEVLSALPRLEVVNLAGTRARD 541
>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana]
gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana]
gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana]
gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 212/459 (46%), Gaps = 71/459 (15%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G +NL+ L+L C RI+ L + GL L L++ C +T
Sbjct: 66 IDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVT 125
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-----------GLSISSVIFILCSMIIR 218
D+ MK L + NLK L IS + VT+ GI+ L GL ++ I + +
Sbjct: 126 DAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTK 185
Query: 219 LFCLHVF-----------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
L L ++ + L+ LNL +T + L L++N C +
Sbjct: 186 LEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQT-----PNIPHLECLHMNTCTIV 240
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDE----------CLVHL-------------KGLTNL 304
+ + S + SLK L L + E C+ +L + + NL
Sbjct: 241 SEP-KTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNL 299
Query: 305 ESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTG 361
E L+L S GD+ G V G NLK L +SDTQ+ SG+ +L+G + LE++++S T
Sbjct: 300 EHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTF 358
Query: 362 ISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+ D S+ ++ + +K+L+L + S G +L + + A L++
Sbjct: 359 VDDLSILLISTTMPCIKALDL-----------GMNSTLGFYYL-ISPQEEKEKSLAALQS 406
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
+L +L + L D + + L+ LT L+L+ + +LTD TL +S L LVSL V +
Sbjct: 407 LTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNLVSLGVRD 465
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 518
+TS GL +P LR+L L+ C +T +DI L R
Sbjct: 466 GVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDIAGLCKR 504
>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis]
gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 185/379 (48%), Gaps = 35/379 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLSIS 206
+ L L LN+ CN IT S + L+G+T+LK L +S S KVTD+GI +L LSIS
Sbjct: 81 MAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRSVKVTDAGIRHL--LSIS 138
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
S+ + LTSL L++L+L G PVT L SL L L YL+L +
Sbjct: 139 SLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQVLTKLEYLDLWGSNI 198
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
S++G L LNLG+ +T L + +LE LNL +C I E L+ G
Sbjct: 199 SNNGVAVLQLFPKLSFLNLGWTSVT-----RLPSMLSLEYLNLSNCTI--ESLLEGDGDG 251
Query: 327 NLKCLELSDTQV---GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK---SLN 380
+ L T+V G++ N+E LSF +S+ SL+ L +K L+
Sbjct: 252 DKAPL----TKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMKMLEHLD 307
Query: 381 LDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 438
L + + D + A+ + LT+L+L R+T +G A L + L L + + D
Sbjct: 308 LSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHALVDDFA 367
Query: 439 VKHIKDLSSLTLLNLSQNCNLTD------------KTLELISGLTGLVSLNVSNSRITSA 486
+ +I +SSL +++LS N N+ +L+ + GL+GL SLN+ ++++ A
Sbjct: 368 LSYIGMMSSLKVVDLS-NTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLNLEHTQVRDA 426
Query: 487 GLRHLKPLKNLRSLTLESC 505
+ + + L L+L+S
Sbjct: 427 AVAPVSSFQELSHLSLKSA 445
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 279 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT 336
S++V++L G N + E + +L L LNL C I L +LTG+ +LK L+LS +
Sbjct: 64 SVEVVDLRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRS 123
Query: 337 -QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+V +G+RHL +++LE + + TG++ + L L++L L+L +TD L++L
Sbjct: 124 VKVTDAGIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQ 183
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
LT L +LDL+G+ I+++G A L+ F L L + G T V + + SL LNLS
Sbjct: 184 VLTKLEYLDLWGSNISNNGVAVLQLFPKLSFLNL---GWT--SVTRLPSMLSLEYLNLS- 237
Query: 456 NCNL 459
NC +
Sbjct: 238 NCTI 241
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 171/411 (41%), Gaps = 95/411 (23%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T S L L ++L+ LD + ++++D G+ HL +S+L L +TA+G+
Sbjct: 101 ITSSALWSLTGMTSLKELDLSRSVKVTDAGIRHLLSISSLEILRI-PETGLTAKGVALLT 159
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L NL LDL GGL +TD + L LT L+ L +
Sbjct: 160 SLTNLSVLDL-------GGL------------------PVTDMALSSLQVLTKLEYLDLW 194
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
S ++++G+A +++LF KL+ LNL VT
Sbjct: 195 GSNISNNGVA-----------------VLQLF---------PKLSFLNLGWTSVT----- 223
Query: 249 SLSALGSLFYLNLNRCQ----LSDDG--------------------CEKFSKIGSLKVLN 284
L ++ SL YLNL+ C L DG E F I +
Sbjct: 224 RLPSMLSLEYLNLSNCTIESLLEGDGDGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSF 283
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGL 343
L + + + L + LE L+L S +GD+ + + + NL L LS T+V S+GL
Sbjct: 284 LDVSNSSLQGFYFLHDMKMLEHLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGL 343
Query: 344 RHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------------TG 390
L+ + LE ++LS + D +L + +SSLK ++L I
Sbjct: 344 AILAEHVPKLEYLSLSHALVDDFALSYIGMMSSLKVVDLSNTNIKGFIRQMGVETNLIPS 403
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
L AL L+GL L+L ++ D+ A + +F+ L L + L D + H
Sbjct: 404 LKALQGLSGLQSLNLEHTQVRDAAVAPVSSFQELSHLSLKSASLADETLYH 454
>gi|59802548|gb|AAX07514.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 250
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 104/192 (54%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
+++D ++ + + +L LNL ++TD L L LT L L L + D GL L
Sbjct: 30 KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L NL LEL TQV +GL+ L+ LTNL + L T ++D L++LA L SL L L
Sbjct: 90 LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
QIT+ G+ L T LT LDL R+TD+G L F L L + G +TD +K +
Sbjct: 150 QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAP 209
Query: 445 LSSLTLLNLSQN 456
L +L L+LS+N
Sbjct: 210 LKNLAFLSLSRN 221
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 1/189 (0%)
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+ D L L L NL L L T+V +GL+ LS LT L + L T ++D L++LA L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
++L +L L + Q+TD GL L LT LT L L ++TD+G L K+L LE+
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+T+AG+K + + LT L+LS +TD ++ ++ T L LN+ + +T L+ L P
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSIT-RVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAP 209
Query: 494 LKNLRSLTL 502
LKNL L+L
Sbjct: 210 LKNLAFLSL 218
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 102/191 (53%), Gaps = 2/191 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L+ LT LNL VT A L LS L L +L L + +++D G ++ + + +L L L
Sbjct: 39 LAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPLTNLTTLEL 98
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G ++TD L L LTNL L L S + D GL L L +L LEL +TQ+ +G++
Sbjct: 99 GSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQITEAGIKE 158
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+ T L ++LS T ++D ++ LA + L LNL +TDT L L L L L L
Sbjct: 159 LAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPLKNLAFLSL 218
Query: 406 FGARITDSGAA 416
+R GAA
Sbjct: 219 --SRNERDGAA 227
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 98/183 (53%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
VT A L L+ L +L LNL +++D G ++ S + L L L ++TD L L L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
TNL +L L S + D GL L L NL L L TQV +GL+ L+ L +L + L T
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
I++ +++LA + L L+L ++TD G+ L T LT L+L G +TD+ L
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPL 210
Query: 422 KNL 424
KNL
Sbjct: 211 KNL 213
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 1/172 (0%)
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+V + L+ L+ L NL +NL T ++D L++L+ L+ L L L ++TD GL L
Sbjct: 30 KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
LT LT L+L ++TD+G L NL L + +TDAG+K + L SLTLL L +
Sbjct: 90 LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+T+ ++ ++ T L L++S +R+T AG++ L P L L L VT
Sbjct: 150 -QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVT 200
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
S++ + ++D L++LA L +L LNL ++TD GL L+ LT LTHL L ++TD+
Sbjct: 23 SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
G L NL +LE+ +TDAG+K + L++LT+L L + +TD L+ ++ L L
Sbjct: 83 GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLG-STQVTDAGLKELAPLKSL 141
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L + ++IT AG++ L P L L L +VT +K L
Sbjct: 142 TLLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGL 183
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+TD+D+K L+ L NL L + +KVTD+G+ L+
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKE--------------------------LS 64
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L KLT L L VT A L L+ L +L L L Q++D G ++ + + +L VL LG
Sbjct: 65 PLTKLTHLCLMQTKVTDAGLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGS 124
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
++TD L L L +L L L I + G+ L L L+LS T+V +G++ L+
Sbjct: 125 TQVTDAGLKELAPLKSLTLLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLA 184
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
T L +NL T ++D L+ LA L +L L+L
Sbjct: 185 PFTKLTQLNLGGTLVTDTCLKDLAPLKNLAFLSL 218
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 111/257 (43%), Gaps = 55/257 (21%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLS 112
+ G ++SVD + VTD+ L L NL L N C+ +++D GL+ L L+ LT L
Sbjct: 16 APGKPVISVDFALWKVTDADLKELAPLKNLTQL--NLCLTKVTDAGLKELSPLTKLTHLC 73
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ +T G+K A L NL L+L +TD+
Sbjct: 74 LMQTK-VTDAGLKELAPLTNLTTLEL-------------------------GSTQVTDAG 107
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+K L+ LTNL L + ++VTD+G+ L L+ L
Sbjct: 108 LKELAPLTNLTVLTLGSTQVTDAGLKE--------------------------LAPLKSL 141
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
TLL L +T A + L+ L L+L+ +++D G + + L LNLG +TD
Sbjct: 142 TLLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTD 201
Query: 293 ECLVHLKGLTNLESLNL 309
CL L L NL L+L
Sbjct: 202 TCLKDLAPLKNLAFLSL 218
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 19 CLTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
CLT+V+ ++ + L LCL Q V D + +A ++L +++L + VTD+GL
Sbjct: 51 CLTKVTDAGLKELSPLTKLTHLCLMQT-KVTDAGLKELAPL-TNLTTLELGSTQVTDAGL 108
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L +NL L Q++D GL+ L L +LT L IT G+K A L
Sbjct: 109 KELAPLTNLTVLTLG-STQVTDAGLKELAPLKSLTLLELGETQ-ITEAGIKELAPFTKLT 166
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LDL G+ L KL LN+ +TD+ +K L+ L NL L +S
Sbjct: 167 RLDLSITRVTDAGVKGLAPFTKLTQLNL-GGTLVTDTCLKDLAPLKNLAFLSLS 219
>gi|290977929|ref|XP_002671689.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284085260|gb|EFC38945.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 434
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 25/282 (8%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ ++ LT LN+ C +T+ + + L L YLN+ ++ D G + K+ SL VL +
Sbjct: 139 ISKIKTLTSLNVLDCGITSKGAEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSLNVLQI 198
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G EIT E + + L SL++ S + E +++ + LK L +S+T + GL++
Sbjct: 199 GSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSISSIHGLKSLNISNTGISVEGLKY 258
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LS LT L +L+L IT+ GL +++ + +T L L
Sbjct: 259 LSALT------------------------LLTNLSLAKNNITNEGLLSISQMKQITKLFL 294
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
I GA L NLR L I +T G+KHI L ++T LN+S N L D+ L+
Sbjct: 295 QHNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISIN-QLNDEALK 353
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L+S + L +L+ N+++TS G +H+ L NL L + S V
Sbjct: 354 LVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISSNPV 395
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 174/423 (41%), Gaps = 74/423 (17%)
Query: 1 MLPRDISQQIFNELVYSRCLTE---VSLEAF-----RDCALQDLCLGQYPGVNDKWMDVI 52
+ P DI ++I L + L +S + F R A L GQ W+ I
Sbjct: 24 LFPDDICEEIMQWLAWKEVLLNCCLISKQWFTIAKSRYRASIQLTYGQ----EKLWLCFI 79
Query: 53 ASQGSSL-----LSVD---LSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
Q + + VD + GS DS I K NL+ L+ Q D G E +
Sbjct: 80 KEQQEGISRIFNIGVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESI 139
Query: 103 RGLSNLTSLSFRR-----------------------NNAITAQGMKAFAGLINLVKLDLE 139
+ LTSL+ NN I GMK L +L L +
Sbjct: 140 SKIKTLTSLNVLDCGITSKGAEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSLNVLQI- 198
Query: 140 RCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
T I L G MK L SL+I + N +T D K +S + LKSL IS + ++ G+
Sbjct: 199 GSTEITSESFKLVGCMKGLTSLSI-YSNPVTIEDAKSISSIHGLKSLNISNTGISVEGLK 257
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
YL L++ LT L+L +T L S+S + +
Sbjct: 258 YLSALTL--------------------------LTNLSLAKNNITNEGLLSISQMKQITK 291
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L L + DG + S + +L++LN+ +IT E + H+ L N+ SLN+ + DE
Sbjct: 292 LFLQHNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEA 351
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L ++ + L L + ++ S G +H+S L NL +N+S + L +++LK
Sbjct: 352 LKLVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKI 411
Query: 379 LNL 381
+N+
Sbjct: 412 INV 414
>gi|290999929|ref|XP_002682532.1| predicted protein [Naegleria gruberi]
gi|284096159|gb|EFC49788.1| predicted protein [Naegleria gruberi]
Length = 339
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 147/323 (45%), Gaps = 27/323 (8%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+ LSGL LKSL I S++ G+ Y+ L + + I I + +L+ L++L
Sbjct: 44 VHHLSGLKQLKSLHIYGSQIRGEGVRYISELKQLTNLDIRSHNIFHIGA--KYLSELKQL 101
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T LN+ G + A G + S++ L L + N I
Sbjct: 102 TTLNIYGNHIGAK------------------------GSKYISELNQLTTLFIAENSIGV 137
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E +L L L +L + +G+EGL ++ + L L++S +G+ G +HL L L
Sbjct: 138 EGAKYLSELKQLTNLGISVNWLGNEGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQL 197
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+N+S I D L + L L +L ++ I G L+ L LT L++ RI D
Sbjct: 198 TLLNISHNKIQDEGLENIGKLKQLTTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGD 257
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
G+ Y+ K L L I + + G K+++DL L LN+ N D+ + IS L
Sbjct: 258 EGSKYIGELKQLVDLYINDNDIGEEGAKYLRDLKQLIYLNVGGN-EFGDEGAKYISELKQ 316
Query: 473 LVSLNVSNSRITSAGLRHLKPLK 495
L L+++N+ I G +HL +K
Sbjct: 317 LTKLDINNNSIGDEGTKHLSEMK 339
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 12/303 (3%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ HL GL L SL + I +G++ + L L LD+ H G L L +L
Sbjct: 44 VHHLSGLKQLKSLHIY-GSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLT 102
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
+LNI + N I K +S L L +L I+ + + G YL S + L ++ I
Sbjct: 103 TLNI-YGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYL------SELKQLTNLGIS 155
Query: 219 LFCLH----VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
+ L +++ +++LT+L++ + A L L L LN++ ++ D+G E
Sbjct: 156 VNWLGNEGLAYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLNISHNKIQDEGLENI 215
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
K+ L L + N+I E +L L L LN+ IGDEG + L L L ++
Sbjct: 216 GKLKQLTTLIINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSKYIGELKQLVDLYIN 275
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
D +G G ++L L L +N+ D + ++ L L L+++ I D G L
Sbjct: 276 DNDIGEEGAKYLRDLKQLIYLNVGGNEFGDEGAKYISELKQLTKLDINNNSIGDEGTKHL 335
Query: 395 TSL 397
+ +
Sbjct: 336 SEM 338
>gi|290991306|ref|XP_002678276.1| predicted protein [Naegleria gruberi]
gi|284091888|gb|EFC45532.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 157/305 (51%), Gaps = 7/305 (2%)
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
H F++ +++LT LN+ + S+ + L L++ Q+ D+G + S++ L +
Sbjct: 94 HKFISEMKQLTSLNISNNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTL 153
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L++ N I D+ + + + L SLN+ + IG G + + L L++S ++G G
Sbjct: 154 LDISGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEG 213
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ +S L L S+ +S I D ++ ++ + L L++ I D G+ ++ + LT
Sbjct: 214 AKSISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTS 273
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L+++ I +G+ ++ K L SL+I + D G K I ++ LT L +S N + D+
Sbjct: 274 LNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGN-QIGDE 332
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQ 516
++LIS + L L++S + G++ + +K L SLT+ + ++ +++K+L
Sbjct: 333 GIKLISEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLT 392
Query: 517 SRDLP 521
S D+
Sbjct: 393 SLDIS 397
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 174/350 (49%), Gaps = 4/350 (1%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLNI N I D K + + L SL I +++ D GI + + +++ I
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDISG 158
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+ I + + +++LT LN+ + A + + L L+++ ++ D+G +
Sbjct: 159 NSIGDKGVKPI--SKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKS 216
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S++ L L + N+I DE + + + L L++ IGD+G+ ++ + L L +
Sbjct: 217 ISELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNI 276
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
+ ++G +G + + + L S+++S+ I D + ++ + L SL + QI D G+
Sbjct: 277 YNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKL 336
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
++ + LT LD+ G + D G + K L SL I + AG K I ++ LT L++
Sbjct: 337 ISEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDI 396
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
S N + D+ + IS L L L++S + I G + + +K L+SL ++
Sbjct: 397 SYN-EIGDEGAKSISELKQLTLLDISGNGIGDEGSKFIIGMKQLKSLDIQ 445
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 163/371 (43%), Gaps = 53/371 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ G+ + D G+ + + L LD + I D G++ + + LTSL+ NN
Sbjct: 127 LTSLDIGGNQIGDEGIKLISEMKQLTLLDISGN-SIGDKGVKPISKMKQLTSLNI-YNNE 184
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I G K + L LD+ N I D K +S
Sbjct: 185 IGVAGSKFIIEMKQLTSLDIS-------------------------YNEIGDEGAKSISE 219
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L L SL +S +++ D GI ++ +++LTLL++
Sbjct: 220 LKQLTSLTVSGNQIGDEGIK--------------------------LISEMKQLTLLDIS 253
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
G + + +S + L LN+ ++ G + ++ L L++ +NEI DE +
Sbjct: 254 GNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSI 313
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
+ L SL + IGDEG+ ++ + L L++S VG G++ +S + L S+ +
Sbjct: 314 SEMKQLTSLTISGNQIGDEGIKLISEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIY 373
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
I + ++ + L SL++ +I D G +++ L LT LD+ G I D G+ ++
Sbjct: 374 TNEIGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTLLDISGNGIGDEGSKFI 433
Query: 419 RNFKNLRSLEI 429
K L+SL+I
Sbjct: 434 IGMKQLKSLDI 444
>gi|290999671|ref|XP_002682403.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284096030|gb|EFC49659.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 403
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 140/278 (50%), Gaps = 1/278 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ L++LT L + G + + +S L L YL++ +S+ G + ++ L L
Sbjct: 127 YISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSIPSNGISEYGAKHLRELKQLTTLI 186
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N + +E ++ L L +L++D IG EG L+ L L CL++S +G G +
Sbjct: 187 IFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKYLSELTQLTCLDISSNWLGDEGAK 246
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++S + L +++++ I + + ++ L+ LK+L++ I D GL L L LD
Sbjct: 247 YVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDICKNDIGDEGLEYFGQLAQLKSLD 306
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L RI D GA YL K L L+I L D G I +L L L ++ N + ++
Sbjct: 307 LSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMPIGELKKLIYLYINNN-KIRNEGA 365
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ IS L L L++ N+ IT G ++ +K L LT+
Sbjct: 366 KYISELKQLTKLDIRNNFITEEGTKYFTEMKQLIDLTI 403
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 133/266 (50%), Gaps = 8/266 (3%)
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
RC ++G + S++ L L + + I DE + ++ L L L++ S GI + G +L
Sbjct: 118 RCD-DEEGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSIPSNGISEYGAKHL 176
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
L L L + +VG+ G +++S L L ++++ I + L+ L+ L L++
Sbjct: 177 RELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKYLSELTQLTCLDIS 236
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
+ + D G ++ + LT L + RI + G+ ++ + L++L+IC + D G+++
Sbjct: 237 SNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDICKNDIGDEGLEYF 296
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L+ L L+LS N + D+ + +S L L+ L++ + + G + LK L L +
Sbjct: 297 GQLAQLKSLDLSYN-RIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMPIGELKKLIYLYI 355
Query: 503 ESCKV------TANDIKRLQSRDLPN 522
+ K+ +++K+L D+ N
Sbjct: 356 NNNKIRNEGAKYISELKQLTKLDIRN 381
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 55/265 (20%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + + +++ G HL++ L +L FC ++ + G +++ L LT+LS
Sbjct: 153 SELKQLTYLSIPSNGISEYGAKHLRELKQLTTLII-FCNRVGNEGSKYISELKQLTTLSI 211
Query: 114 RRNNAITAQGMKAFAGLINLVKLD----------------LERCTRIH--------GGLV 149
N+ I A+G K + L L LD +++ T +H G
Sbjct: 212 DEND-IGAEGAKYLSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSK 270
Query: 150 NLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
+ L +L++L+I C N I D ++ L LKSL +S +++ D G Y
Sbjct: 271 FISSLNQLKNLDI--CKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQY--------- 319
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
L+ L++L L+++ + + L L YL +N ++ +
Sbjct: 320 -----------------LSELKQLIYLDIKTNHLGDKGAMPIGELKKLIYLYINNNKIRN 362
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDE 293
+G + S++ L L++ N IT+E
Sbjct: 363 EGAKYISELKQLTKLDIRNNFITEE 387
>gi|149175664|ref|ZP_01854283.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
gi|148845383|gb|EDL59727.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
Length = 660
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 123/449 (27%), Positives = 217/449 (48%), Gaps = 46/449 (10%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAI-TAQGMKAFA-----GLIN------------- 132
+++++ LRGL L SL+ N A+G+ F LIN
Sbjct: 226 VRLAEIDFTQLRGLDGLRSLTLEGVNLYGRAEGLGFFPRLEALTLINTNISDQDRGRITT 285
Query: 133 LVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC- 189
+L R +H G L +L KLE L ++ C + + D+ L LT L+ L +S
Sbjct: 286 FTQLKTLRLENVHLGRHLNDLSTFRKLEKLALRNCG-LDEDDVATLGSLTQLRELDLSGN 344
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCPVTAACLD 248
S + D + +L+ L+ + + S R+ + +L +KL L+L GC + A L
Sbjct: 345 SSLNDVALFHLRNLNQLEELKV-ASYYNRITEKGLQYLRQPRKLKTLDLIGCMLKADGLA 403
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
++ + SL LNL F + LK L E+T EC LKG
Sbjct: 404 AIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLR----ELTLEC-RQLKG-------- 450
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
EGL +L+ L L+ L L T++ +R ++ +L+++ L+ ++D +
Sbjct: 451 -------GEGLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKALTLNSYEVTDQGVS 503
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
L L L+SLNLD ++ +GL +L L LT + L +TD+ +L + L+ L
Sbjct: 504 SLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVIPFLSSLSQLKRLT 563
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G ++ A ++ +KDL L+ LNL+ NC ++D+ EL++ ++ L +LN++ +++++ GL
Sbjct: 564 LENGRVSSATLESLKDLKKLSELNLT-NCPVSDEICELLTQMSALRTLNLNKTKVSNIGL 622
Query: 489 RHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L+ L +L+L KVT +++L++
Sbjct: 623 EGLQKATGLETLSLRRTKVTRQGVQQLRT 651
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 155/353 (43%), Gaps = 50/353 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLVKLDLE 139
+ L+ LD + ++D L HLR L+ L L N IT +G++ L LDL
Sbjct: 334 TQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDLI 393
Query: 140 RCTRIHGGLVNLKGLMKLESLNIK-WCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGI 197
C GL + + LE+LN+K +C D+ PL L +L+ L + C ++
Sbjct: 394 GCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQLKG--- 450
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ-----------KLTLLNLEGCPVTAAC 246
G +SS+ S + L LH+ T LQ L L L VT
Sbjct: 451 ----GEGLSSL-----SQLPELEALHLLQTKLQDEDIRWIANCNSLKALTLNSYEVTDQG 501
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
+ SL +L L LNL+RC+L G LV L+ L L
Sbjct: 502 VSSLGSLKQLESLNLDRCRLDGSG------------------------LVSLQQLHRLTD 537
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
++L+ G+ D + L+ L LK L L + +V S+ L L L L +NL+ +SD
Sbjct: 538 VSLNHTGVTDAVIPFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNCPVSDEI 597
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
L +S+L++LNL+ ++++ GL L TGL L L ++T G LR
Sbjct: 598 CELLTQMSALRTLNLNKTKVSNIGLEGLQKATGLETLSLRRTKVTRQGVQQLR 650
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 144/280 (51%), Gaps = 29/280 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAITAQGMKA 126
+T+ GL +L+ L++LD C+ +D GL + +S+L +L+ + + A
Sbjct: 373 ITEKGLQYLRQPRKLKTLDLIGCMLKAD-GLAAIGDVSSLETLNLKVYCPERVDAHFFDP 431
Query: 127 FAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L +L +L LE C ++ G GL +L L +LE+L++ + D D++ ++ +LK+
Sbjct: 432 LRHLKSLRELTLE-CRQLKGGEGLSSLSQLPELEALHLLQTK-LQDEDIRWIANCNSLKA 489
Query: 185 LQISCSKVTDSGIAYLKGL-SISSVIFILCSM----IIRLFCLH---------------- 223
L ++ +VTD G++ L L + S+ C + ++ L LH
Sbjct: 490 LTLNSYEVTDQGVSSLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAV 549
Query: 224 -VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
FL+SL +L L LE V++A L+SL L L LNL C +SD+ CE +++ +L+
Sbjct: 550 IPFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNCPVSDEICELLTQMSALRT 609
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
LNL ++++ L L+ T LE+L+L + +G+ L
Sbjct: 610 LNLNKTKVSNIGLEGLQKATGLETLSLRRTKVTRQGVQQL 649
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 15/210 (7%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLC-LGQYP----------GVNDKWMDV 51
P + F+ L + + L E++LE + + L L Q P + D+ +
Sbjct: 421 PERVDAHFFDPLRHLKSLRELTLECRQLKGGEGLSSLSQLPELEALHLLQTKLQDEDIRW 480
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
IA+ +SL ++ L+ +VTD G+ L L+SL+ + C ++ GL L+ L LT +
Sbjct: 481 IAN-CNSLKALTLNSYEVTDQGVSSLGSLKQLESLNLDRC-RLDGSGLVSLQQLHRLTDV 538
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S + +T + + L L +L LE L +LK L KL LN+ C ++D
Sbjct: 539 SL-NHTGVTDAVIPFLSSLSQLKRLTLENGRVSSATLESLKDLKKLSELNLTNC-PVSDE 596
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+ L+ ++ L++L ++ +KV++ G+ L+
Sbjct: 597 ICELLTQMSALRTLNLNKTKVSNIGLEGLQ 626
>gi|290979162|ref|XP_002672303.1| predicted protein [Naegleria gruberi]
gi|284085879|gb|EFC39559.1| predicted protein [Naegleria gruberi]
Length = 371
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 165/329 (50%), Gaps = 3/329 (0%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S L L +L IS + + G+ ++ L + + I + I H L++L++LT
Sbjct: 44 KYISELKQLTNLDISYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKH--LSALKQLT 101
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L + + + L L YLN+ ++ D+G + S++ L LN+ + I +
Sbjct: 102 YLYTAFNNIGVEGVKYIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAK 161
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ H+ + L LN+ + IG EG + L L CL + + + G +++S + L
Sbjct: 162 GVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLT 221
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+N+S+ I + + L L L + I D G ++ L LT+L+++ I D
Sbjct: 222 DLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYICDEGAKYISELNQLTNLNIYSNNIGDE 281
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
GA Y+ K L +L+I + GVK+I +L+ LT+L+ S N N+ D+ + IS L L
Sbjct: 282 GAKYISELKQLTNLDISVNQIGAKGVKYIAELNQLTILSASLN-NIRDEGAKYISELKQL 340
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+L++S++ I+ G++ + +K+L L +
Sbjct: 341 TNLDISSNNISIEGVKCFEEMKHLTVLEI 369
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 168/360 (46%), Gaps = 5/360 (1%)
Query: 98 GLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
G+E + +S L L+ + +N I +G K + L L LD+ G+ ++ L
Sbjct: 15 GVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYNNIGAEGVEHIGNLK 74
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+L L I + N I D K LS L L L + + + G+ Y+ L S + I CS
Sbjct: 75 QLTFLCI-YHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKYIIKLKQLSYLNI-CSN 132
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
+ +L+ L++LT LN+ + A ++ ++ + L LN++ + +G +
Sbjct: 133 KVGDEGAK-YLSELKQLTNLNISNSNICAKGVEHITEMNQLTILNISTNNIGIEGAKYIG 191
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
K+ L LN+ ++ I E ++ + L LN+ IG EG + L L CL + +
Sbjct: 192 KLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAKYIGKLKQLTCLTIYN 251
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+ G +++S L L ++N+ I D + ++ L L +L++ QI G+ +
Sbjct: 252 NYICDEGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNLDISVNQIGAKGVKYIA 311
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L LT L I D GA Y+ K L +L+I ++ GVK +++ LT+L + Q
Sbjct: 312 ELNQLTILSASLNNIRDEGAKYISELKQLTNLDISSNNISIEGVKCFEEMKHLTVLEIYQ 371
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 133/291 (45%), Gaps = 1/291 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ L++LT L + + +S L L L+++ + +G E + L L
Sbjct: 21 YISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYNNIGAEGVEHIGNLKQLTFLC 80
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I DE HL L L L IG EG+ + L L L + +VG G +
Sbjct: 81 IYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKYIIKLKQLSYLNICSNKVGDEGAK 140
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+LS L L ++N+S + I + + ++ L LN+ I G + L LT L+
Sbjct: 141 YLSELKQLTNLNISNSNICAKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQLTCLN 200
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
++ + I GA Y+ K L L I + G K+I L LT L + N + D+
Sbjct: 201 IYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNY-ICDEGA 259
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ IS L L +LN+ ++ I G +++ LK L +L + ++ A +K +
Sbjct: 260 KYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNLDISVNQIGAKGVKYI 310
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 168/358 (46%), Gaps = 39/358 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNLTS 110
S+ L ++D+S +++ G+ H+ NL+ L F CI I D G +HL L LT
Sbjct: 47 SELKQLTNLDISYNNIGAEGVEHI---GNLKQLTF-LCIYHNNIGDEGAKHLSALKQLTY 102
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCI 168
L NN I +G+K L L L++ C+ G G L L +L +LNI N I
Sbjct: 103 LYTAFNN-IGVEGVKYIIKLKQLSYLNI--CSNKVGDEGAKYLSELKQLTNLNISNSN-I 158
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
++ ++ + L L IS + + G Y+ L +L CL+++ ++
Sbjct: 159 CAKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLK-------------QLTCLNIYYSN 205
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++EG +S + L LN++ + +G + K+ L L + N
Sbjct: 206 ------IDIEGAKY-------ISEMKQLTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNN 252
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I DE ++ L L +LN+ S IGDEG ++ L L L++S Q+G+ G+++++
Sbjct: 253 YICDEGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNLDISVNQIGAKGVKYIAE 312
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
L L ++ S I D + ++ L L +L++ + I+ G+ + LT L+++
Sbjct: 313 LNQLTILSASLNNIRDEGAKYISELKQLTNLDISSNNISIEGVKCFEEMKHLTVLEIY 370
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 2/275 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+S L L +L ++ ++ +G + S++ L L++ +N I E + H+ L L L +
Sbjct: 22 ISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYNNIGAEGVEHIGNLKQLTFLCI 81
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
IGDEG +L+ L L L + +G G++++ L L +N+ + D +
Sbjct: 82 YHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKYIIKLKQLSYLNICSNKVGDEGAKY 141
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L+ L L +LN+ I G+ +T + LT L++ I GA Y+ K L L I
Sbjct: 142 LSELKQLTNLNISNSNICAKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQLTCLNI 201
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ G K+I ++ LT LN+S N N+ + + I L L L + N+ I G +
Sbjct: 202 YYSNIDIEGAKYISEMKQLTDLNISYN-NIGIEGAKYIGKLKQLTCLTIYNNYICDEGAK 260
Query: 490 HLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 523
++ L L +L + S + K + + L NL
Sbjct: 261 YISELNQLTNLNIYSNNIGDEGAKYISELKQLTNL 295
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 1/215 (0%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N I E ++ L L L + S IG EG ++ L L L++S +G+ G+ H+
Sbjct: 12 NNIGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYNNIGAEGVEHIG 71
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L L + + I D + L+ L L L I G+ + L L++L++
Sbjct: 72 NLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKYIIKLKQLSYLNICS 131
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
++ D GA YL K L +L I + GV+HI +++ LT+LN+S N N+ + + I
Sbjct: 132 NKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILNISTN-NIGIEGAKYI 190
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L L LN+ S I G +++ +K L L +
Sbjct: 191 GKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNI 225
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 1/170 (0%)
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ +G +++S L L + +S I + ++ L L +L++ I G+ +
Sbjct: 11 NNNIGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYNNIGAEGVEHI 70
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+L LT L ++ I D GA +L K L L + GVK+I L L+ LN+
Sbjct: 71 GNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVKYIIKLKQLSYLNIC 130
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
N + D+ + +S L L +LN+SNS I + G+ H+ + L L + +
Sbjct: 131 SN-KVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILNIST 179
>gi|330842680|ref|XP_003293301.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
gi|325076385|gb|EGC30175.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
Length = 684
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 185/369 (50%), Gaps = 14/369 (3%)
Query: 49 MDVIASQGSSLLSVDLSGSD-VTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ I S G + +DLS + ++ +H + +Q ++F+ CI ++D GLE +
Sbjct: 276 LNQILSSGVRVFKLDLSNQSLIVNNDFLHNCFRYLVEVQDVNFSNCINMTDYGLEVFKNE 335
Query: 106 S---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
NL L R N +T G K L+NL +L L + G+ LK L+ L++L++
Sbjct: 336 KFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDV 395
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
C ITD+ M +S + L L +S +++TD I+ + + ++++ ++ S +L
Sbjct: 396 SRCK-ITDNAMVTISLFSKLTLLNLSETQITDVAISNIHQI-LTNIQYLYLSNCQKLTNK 453
Query: 223 HVF-LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSL 280
+F LT K+ LL++ G ++ L L +L YL L NR L+D + + L
Sbjct: 454 SLFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNSLTKL 513
Query: 281 KVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
K L+L + IT + L L LE L L + +GD + + + +L+ L L T +
Sbjct: 514 KKLDLTDYTYIT--SIEPLDNLKYLEELLLANTRVGDSSVPAIKKMKSLEVLSLDRTDIT 571
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
S+G+ L L NL+S++L T I D S+ L+ + SL+ LN+ IT + L +T
Sbjct: 572 SAGVAGLVDL-NLKSLSLMKTKIDDDSINYLSEIKSLRQLNISHNNITHKNIEKLKDITN 630
Query: 400 LTHLDLFGA 408
L LDL G
Sbjct: 631 LNSLDLRGT 639
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 137/291 (47%), Gaps = 40/291 (13%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
L+D GC+ + +L+ L LG I+D + LK L NL++L++ C I D +V ++
Sbjct: 352 LTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTISLF 411
Query: 326 CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 383
L L LS+TQ+ + ++ LTN++ + LS +++ SL L S ++ L++
Sbjct: 412 SKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLSITG 471
Query: 384 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLR----------------------- 419
QI+ G L L L +L+L + D YL
Sbjct: 472 TQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNSLTKLKKLDLTDYTYITSIEPLD 531
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
N K L L + + D+ V IK + SL +L+L D+T +G+ GLV LN+
Sbjct: 532 NLKYLEELLLANTRVGDSSVPAIKKMKSLEVLSL-------DRTDITSAGVAGLVDLNLK 584
Query: 480 N-----SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+ ++I + +L +K+LR L + +T +I++L +D+ NL S
Sbjct: 585 SLSLMKTKIDDDSINYLSEIKSLRQLNISHNNITHKNIEKL--KDITNLNS 633
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
R +TD G L +L L L L I+D G A+L+ NL++L++ +TD + I
Sbjct: 350 RNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDVSRCKITDNAMVTIS 409
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 501
S LTLLNLS+ +TD + I LT + L +SN ++T+ L L +R L+
Sbjct: 410 LFSKLTLLNLSE-TQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFLTYFSKMRLLS 468
Query: 502 LESCKVTANDIKRLQSRDLPNLV 524
+ +++ N L + LPNL+
Sbjct: 469 ITGTQISLNGFVHL--KRLPNLL 489
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 433 GLTDAGVKHIKDLS---SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+TD G++ K+ +L +L+L N NLTD + + L L L + ++ I+ G+
Sbjct: 323 NMTDYGLEVFKNEKFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVA 382
Query: 490 HLKPLKNLRSLTLESCKVTAN 510
LK L NL++L + CK+T N
Sbjct: 383 FLKQLVNLKTLDVSRCKITDN 403
>gi|188586163|ref|YP_001917708.1| hypothetical protein Nther_1542 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350850|gb|ACB85120.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 344
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 144/269 (53%), Gaps = 8/269 (2%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+ +LQ+L+L +G + +++L+ + +L LNLN +++D+G E+ ++ +LK ++
Sbjct: 77 YAINLQELSL---QGTKI--EDVNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQIS 131
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L ++TDE L +LE L L + D+GL +L NLK L+L T V G
Sbjct: 132 LTHTDVTDEGTKLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAE 191
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
HL+ NLE ++L T ++D + +L + +L+ L L ++TD G+ L L L
Sbjct: 192 HLAETDNLEKLSLVDTEVTDEGIEQLVKVDNLEVLILGWTEVTDNGVEYLAEADNLEMLH 251
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L G IT+ G YL NL L++ +TD V + + SL L+L + ++TD+ +
Sbjct: 252 LDGTEITNEGVKYLAEADNLEELDLKQTKVTD--VNALAETDSLEELDL-WDTDVTDEGV 308
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+ ++ L +N+ + +T+ G+ HL+
Sbjct: 309 KELAEADSLKVVNLDETEVTNEGVEHLED 337
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 150/314 (47%), Gaps = 35/314 (11%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY--------LK 201
NLK +K E L ++ IT+ +++ L+ LT +S + GI Y L+
Sbjct: 38 NLKAAIK-EELGVE---QITEENIEDLTTLT------VSGEDINIKGIEYAINLQELSLQ 87
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
G I V L + L LNL +T ++ L+ +L ++L
Sbjct: 88 GTKIEDV---------------NTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISL 132
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
++D+G + ++ SL+ L L E+TD+ L HL NL+ L+L + D+G +
Sbjct: 133 THTDVTDEGTKLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEH 192
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L NL+ L L DT+V G+ L + NLE + L +T ++D + LA +L+ L+L
Sbjct: 193 LAETDNLEKLSLVDTEVTDEGIEQLVKVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHL 252
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
D +IT+ G+ L L LDL ++TD A L +L L++ +TD GVK
Sbjct: 253 DGTEITNEGVKYLAEADNLEELDLKQTKVTDVNA--LAETDSLEELDLWDTDVTDEGVKE 310
Query: 442 IKDLSSLTLLNLSQ 455
+ + SL ++NL +
Sbjct: 311 LAEADSLKVVNLDE 324
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 151/296 (51%), Gaps = 13/296 (4%)
Query: 104 GLSNLTSLSFRRNNAITAQG----MKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLE 158
G+ +T + +T G +K INL +L L + T+I VN L + LE
Sbjct: 48 GVEQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSL-QGTKIED--VNTLAEVDNLE 104
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
LN+ + ITD ++ L+ NLK + ++ + VTD G L S S IL +
Sbjct: 105 ELNLNYTE-ITDEGIEQLAEADNLKQISLTHTDVTDEGTKLL-AESESLERLILSGTEVT 162
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
L L L L+L G VT + L+ +L L+L +++D+G E+ K+
Sbjct: 163 DDGLE-HLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLVKVD 221
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L+VL LG+ E+TD + +L NLE L+LD I +EG+ L NL+ L+L T+V
Sbjct: 222 NLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGVKYLAEADNLEELDLKQTKV 281
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ + L+ +LE ++L T ++D +++LA SLK +NLD ++T+ G+ L
Sbjct: 282 --TDVNALAETDSLEELDLWDTDVTDEGVKELAEADSLKVVNLDETEVTNEGVEHL 335
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 128/267 (47%), Gaps = 33/267 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L Y + D+ ++ +A + +L + L+ +DVTD G L + +L+ L +
Sbjct: 103 LEELNLN-YTEITDEGIEQLA-EADNLKQISLTHTDVTDEGTKLLAESESLERLILSGT- 159
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GLEHL NL L + +T G + A NL KL L G+ L
Sbjct: 160 EVTDDGLEHLIEADNLKKLDLHGTD-VTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLV 218
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
+ LE L + W +TD+ ++ L+ NL+ L + +++T+ G+ Y
Sbjct: 219 KVDNLEVLILGWTE-VTDNGVEYLAEADNLEMLHLDGTEITNEGVKY------------- 264
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
L L L+L+ VT +++L+ SL L+L ++D+G +
Sbjct: 265 -------------LAEADNLEELDLKQTKVTD--VNALAETDSLEELDLWDTDVTDEGVK 309
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLK 299
+ ++ SLKV+NL E+T+E + HL+
Sbjct: 310 ELAEADSLKVVNLDETEVTNEGVEHLE 336
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
NL+ ++L T I D + LA + +L+ LNL+ +ITD G+ L L + L +
Sbjct: 80 NLQELSLQGTKIED--VNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDV 137
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
TD G L ++L L + G +TD G++H+ + +L L+L
Sbjct: 138 TDEGTKLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLH---------------- 181
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519
+ +T G HL NL L+L +VT I++L D
Sbjct: 182 ---------GTDVTDDGAEHLAETDNLEKLSLVDTEVTDEGIEQLVKVD 221
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 18/151 (11%)
Query: 384 RQITDTGLAALTSLT---------------GLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
QIT+ + LT+LT L L L G +I D L NL L
Sbjct: 50 EQITEENIEDLTTLTVSGEDINIKGIEYAINLQELSLQGTKIEDVNT--LAEVDNLEELN 107
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ +TD G++ + + +L ++L+ + ++TD+ +L++ L L +S + +T GL
Sbjct: 108 LNYTEITDEGIEQLAEADNLKQISLT-HTDVTDEGTKLLAESESLERLILSGTEVTDDGL 166
Query: 489 RHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519
HL NL+ L L VT + + L D
Sbjct: 167 EHLIEADNLKKLDLHGTDVTDDGAEHLAETD 197
>gi|290993192|ref|XP_002679217.1| predicted protein [Naegleria gruberi]
gi|284092833|gb|EFC46473.1| predicted protein [Naegleria gruberi]
Length = 310
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 131/255 (51%), Gaps = 2/255 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+S L L LN+ C + + + +K+ L L++G N+I + L + +L L++
Sbjct: 57 ISELRELRELNIRYCDIGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLSTMKSLTKLDV 116
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
C IGDEG ++T L L L ++ +G G + + NL+S+++S + +
Sbjct: 117 AECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNNFFGNYGAKS 176
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
++ LS L+ LN+ I + G+ L L LT L + ITD G Y+ L L+I
Sbjct: 177 ISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVELDQLTHLDI 236
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ G K I ++S LT LN+S N + D+ + IS L L SLNVS R++ G+
Sbjct: 237 SNNQIETEGAKSISEMSQLTSLNISSNI-IGDEGAQYISHLKKLTSLNVSKCRVSEEGVE 295
Query: 490 HL-KPLKNLRSLTLE 503
+ K LK+L++L +E
Sbjct: 296 SIRKQLKHLKTLEVE 310
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 142/265 (53%), Gaps = 2/265 (0%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
L ++ E S++ L+ LN+ + +I E + +L L L SL++ I +G L+
Sbjct: 48 HLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLST 107
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ +L L++++ ++G G + ++ L L +N++ GI G + + +LKSL++
Sbjct: 108 MKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNN 167
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+ G +++ L+ L L++ + I + G LR KNL SL I +TD G K+I +
Sbjct: 168 FFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVE 227
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L LT L++S N + + + IS ++ L SLN+S++ I G +++ LK L SL +
Sbjct: 228 LDQLTHLDISNN-QIETEGAKSISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSK 286
Query: 505 CKVTANDIKRLQSRDLPNLVSFRPE 529
C+V+ ++ ++ + L +L + E
Sbjct: 287 CRVSEEGVESIR-KQLKHLKTLEVE 310
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 155/328 (47%), Gaps = 30/328 (9%)
Query: 105 LSNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 162
LSN ++ +N+ IT + K L NL KLD+ + +V L L +L LNI
Sbjct: 9 LSNFIFATYAGKNSEITVELAKCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNI 68
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
++C+ I ++K L+ L L SL I +++ G L + + + + I C
Sbjct: 69 RYCD-IGVEEVKYLTKLDKLHSLDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQ 127
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
+ T L +LT LN+ G + + + + +L L+++ + G + S++ L++
Sbjct: 128 SI--TELYQLTDLNINGDGIGVGGANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEI 185
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
LN+ +++I + + L+ L NL SL++ I DEG + L L L++S+ Q+ + G
Sbjct: 186 LNVSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTKYIVELDQLTHLDISNNQIETEG 245
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ +S + S L SLN+ + I D G ++ L LT
Sbjct: 246 AKSISEM------------------------SQLTSLNISSNIIGDEGAQYISHLKKLTS 281
Query: 403 LDLFGARITDSGAAYLR-NFKNLRSLEI 429
L++ R+++ G +R K+L++LE+
Sbjct: 282 LNVSKCRVSEEGVESIRKQLKHLKTLEV 309
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 6/198 (3%)
Query: 325 LCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L NLK L++S + + + + +S L L +N+ + I ++ L L L SL++
Sbjct: 35 LKNLKKLDVSYNYHLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHSLDIGI 94
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
QI G L+++ LT LD+ I D G + L L I G G+ G I
Sbjct: 95 NQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIG 154
Query: 444 DLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+ +L L++S N N K+ IS L+ L LNVS S I G+ L+ LKNL SL+
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKS---ISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLS 211
Query: 502 LESCKVTANDIKRLQSRD 519
+ ++T K + D
Sbjct: 212 IHHNEITDEGTKYIVELD 229
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q +L S+D+S + + G + + S L+ L+ ++ I + G+ LR L NLTSLS
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYS-DIDEVGVYQLRKLKNLTSLSI- 212
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N IT +G K L L LD+ G ++ + +L SLNI N I D +
Sbjct: 213 HHNEITDEGTKYIVELDQLTHLDISNNQIETEGAKSISEMSQLTSLNIS-SNIIGDEGAQ 271
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLK 201
+S L L SL +S +V++ G+ ++
Sbjct: 272 YISHLKKLTSLNVSKCRVSEEGVESIR 298
>gi|290985427|ref|XP_002675427.1| predicted protein [Naegleria gruberi]
gi|284089023|gb|EFC42683.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 52/348 (14%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLNI N I D + K +S + L SL IS + + D G
Sbjct: 24 MKQLISLNI-GKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAK--------------- 67
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
++ +++LT LN+ + LS + L LN+ ++ D+G +
Sbjct: 68 -----------LISEMKQLTSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKL 116
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S+ L LN+GF + IG EG ++ + L L++
Sbjct: 117 ISETRQLTSLNIGFTQ------------------------IGGEGAKFISEMKQLTSLDI 152
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
SD +G G + +S + L S+N+S I D + ++ + L SLN+ QI G+
Sbjct: 153 SDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKL 212
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
++ + LT LD+ +I D GA + K L SL I G + D G K + ++ L L++
Sbjct: 213 ISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDI 272
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
S N + D+ +LIS + L+SLN+ +RI G+++++ +K L SLT
Sbjct: 273 SYN-QIGDEGTKLISEMKQLISLNIRANRIGDEGVKYIREMKQLTSLT 319
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 7/259 (2%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
D + S++ L LN+G NEI DE + + L SLN+ IGDEG ++ + L
Sbjct: 16 DEAKLISEMKQLISLNIGKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAKLISEMKQL 75
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L + ++G G ++LS + L S+N+ I D + ++ L SLN+ QI
Sbjct: 76 TSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQIGG 135
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
G ++ + LT LD+ I GA ++ K L SL I + D G K I ++ L
Sbjct: 136 EGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLISEMKQL 195
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV- 507
T LN+S N + + ++LIS + L SL++SN++I G + + +K L SL + ++
Sbjct: 196 TSLNISNN-QIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISGNRIG 254
Query: 508 -----TANDIKRLQSRDLP 521
+ +++K+L+S D+
Sbjct: 255 DEGAKSMSEMKQLKSLDIS 273
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 136/289 (47%), Gaps = 25/289 (8%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLNI N I D K +S + L SL I C+++ G YL
Sbjct: 48 MKQLTSLNI-SDNLIGDEGAKLISEMKQLTSLNICCNRIGVEGAKYL------------- 93
Query: 214 SMIIRLFCLHV-----------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
S + +L L++ ++ ++LT LN+ + +S + L L+++
Sbjct: 94 SEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDIS 153
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
+ +G + S++ L LN+ N I DE + + L SLN+ + IG EG+ +
Sbjct: 154 DNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLI 213
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
+ + L L++S+ Q+G G + +S + L S+N+S I D + ++ + LKSL++
Sbjct: 214 SEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDIS 273
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
QI D G ++ + L L++ RI D G Y+R K L SL G
Sbjct: 274 YNQIGDEGTKLISEMKQLISLNIRANRIGDEGVKYIREMKQLTSLTYKG 322
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S + + G + + L SL+ + + I D G + + + LTSL+
Sbjct: 142 SEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNL-IGDEGAKLISEMKQLTSLNI 200
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + + L LD+ G + + +L SLNI N I D
Sbjct: 201 S-NNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISG-NRIGDEGA 258
Query: 174 KPLSGLTNLKSLQISCSKVTDSG 196
K +S + LKSL IS +++ D G
Sbjct: 259 KSMSEMKQLKSLDISYNQIGDEG 281
>gi|449132603|ref|ZP_21768618.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448888282|gb|EMB18604.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 455
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 154/322 (47%), Gaps = 7/322 (2%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S + L + LS + +TD + + L+ L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-TKLERLILSDTAITDRTIETAGKMNTLEVL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM A + L + LE+ GLV L L L+ +N
Sbjct: 176 LTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-PLKYIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+C I MK L L+ LQ SK+ D+ +A LKGLS + + I +
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGI 293
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSL 280
H+ + + L L V L+ +S L ++ +++++ C+L S +G + K+ L
Sbjct: 294 KHI--ANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 351
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L L + D L L NLE LNL S + D+ L L + LK L ++ TQ+G
Sbjct: 352 TYLGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGD 411
Query: 341 SGLRHLSGLTNLESINLSFTGI 362
L+ L NL+S+N++ T I
Sbjct: 412 DSFLELAKLPNLKSMNVANTSI 433
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 142/272 (52%), Gaps = 4/272 (1%)
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
G + A +++L++L L L L+ ++D E K+ +L+VL L +TDE L L
Sbjct: 117 GPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNTLEVLFLRRTGVTDEGLELL 176
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
GL+ L +++L + IGD G+ L + L ++L ++V GL L+ L L+ IN +
Sbjct: 177 TGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPLP-LKYINFN 235
Query: 359 F-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
+ T I+ +++ L +L+ L D +I D +A L L+ LTHL + G +T G +
Sbjct: 236 YCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGIKH 295
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL-TDKTLELISGLTGLVSL 476
+ N K L E+ + D G++ I L ++T +++S+ C L + + + + LTGL L
Sbjct: 296 IANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISE-CRLASPEGIAQLGKLTGLTYL 354
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ ++ A L L NL L L+S VT
Sbjct: 355 GLWETKTNDATLEAFGELVNLEELNLKSTSVT 386
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 148/318 (46%), Gaps = 6/318 (1%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I D+ M+ L+ LT L+ L +S + +TD I ++ V+F+ + + LT
Sbjct: 120 IDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNTLEVLFLRRTGVTDEGL--ELLT 177
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L KL ++L + A +D L+ + +L + L + +++D+G K + + LK +N +
Sbjct: 178 GLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-PLKYINFNY 236
Query: 288 -NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
I + L LE L D I D + L GL L L + V G++H+
Sbjct: 237 CTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGIKHI 296
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 405
+ L L + + D L ++ L ++ +++ + R + G+A L LTGLT+L L
Sbjct: 297 ANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGL 356
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+ + D+ NL L + +TD + + ++ L LN++ L D +
Sbjct: 357 WETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVA-GTQLGDDSFL 415
Query: 466 LISGLTGLVSLNVSNSRI 483
++ L L S+NV+N+ I
Sbjct: 416 ELAKLPNLKSMNVANTSI 433
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 116/265 (43%), Gaps = 52/265 (19%)
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------- 337
+E + HL G+ N + GI D G+ NLT L L+ L LSDT
Sbjct: 98 EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157
Query: 338 ----------VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
V GL L+GL+ L +I+L T I D + LA + +L + L+ ++T
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217
Query: 388 DTGLAAL-------------TSLTGLTHLDLFG------------ARITDSGAAYLRNFK 422
D GL L T++ G T + + G ++I D+ A L+
Sbjct: 218 DEGLVKLAPLPLKYINFNYCTTINGPT-MKMLGQTPTLERLQGDYSKINDASMAELKGLS 276
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
L L I G +T G+KHI + +L L ++ ++ DK LE+IS L + +++S R
Sbjct: 277 KLTHLRIRGCDVTGEGIKHIANNKALAKFEL-RDSSVDDKGLEVISQLPAVTHVDISECR 335
Query: 483 ITSA-GLRHLKPLKNLRSLTLESCK 506
+ S G+ L L L L L K
Sbjct: 336 LASPEGIAQLGKLTGLTYLGLWETK 360
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
GI + S++ L+G+ + + I D G+ LTSLT L L L ITD
Sbjct: 96 GIEE-SMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITD-------- 146
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
R++E G +++L +L L + +TD+ LEL++GL+ L ++++ N
Sbjct: 147 ----RTIETAG------------KMNTLEVLFL-RRTGVTDEGLELLTGLSKLRAIDLRN 189
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ I AG+ L +K L + LE KVT + +L
Sbjct: 190 TNIGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKL 224
>gi|46445968|ref|YP_007333.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399609|emb|CAF23058.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 616
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 126/239 (52%), Gaps = 9/239 (3%)
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNLTGLCNLKC 330
+++ + + +L L E+TD L HL L NL LNL D + D GL +LT L NL+
Sbjct: 314 EYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQH 373
Query: 331 LELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQIT 387
L L ++ GL HL L NL+ +NL ++D L L L +L+ LNL ++T
Sbjct: 374 LNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLT 433
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICG-GGLTDAGVKHIKD 444
D GLA LT L L HLDL + +GA AYL +L+ L +C LTD G+ H+
Sbjct: 434 DAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTP 493
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTL 502
L +L L+LS NLTD L ++ L L LN+ +T GL HL L NLR L L
Sbjct: 494 LVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVL 552
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 144/287 (50%), Gaps = 42/287 (14%)
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKI 277
F + +LT + LL L+ +T A L L+ L +L +LNL + L+D G + +
Sbjct: 312 FSEYAYLTDIH---LLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPL 368
Query: 278 GSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD 335
+L+ LNL + +++TD+ L HL+ L NL+ LNL C + D GL +L L NL+ L LS
Sbjct: 369 VNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSK 428
Query: 336 -TQVGSSGLRHLSGLTNLESINLS-----FTGISDGSLRKLAGLSSLKSLNLDA-RQITD 388
++ +GL HL+ L NL+ ++LS FTG L LA L L+ LNL ++TD
Sbjct: 429 CPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTG---AGLAYLAPLIDLQYLNLCCCNELTD 485
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
GL LT L L HLDL G LTDAG+ H+ L +L
Sbjct: 486 IGLMHLTPLVNLQHLDLSGC-----------------------DNLTDAGLMHLTSLVNL 522
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVS--NSRITSAGLRHLKP 493
LNL NLT L ++ L L L +S + + AGL HL P
Sbjct: 523 QHLNLRCCDNLTKTGLMHLTSLVNLRQLVLSWYSPDLNEAGLAHLIP 569
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 150/321 (46%), Gaps = 74/321 (23%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQY-PGVNDKWMDVIASQGSSLLSVDLSG--S 67
F+E Y LT++ L A + L D L P VN L ++LSG S
Sbjct: 312 FSEYAY---LTDIHLLALKSWELTDARLAHLAPLVN-------------LRHLNLSGDMS 355
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL NLQ L+ ++C +++D GL HLR L NL L+ N +T G+
Sbjct: 356 NLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHL 415
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSL 185
L+NL L+L +C ++ GL +L L+ L+ L++ WC T + + L+ L +L+ L
Sbjct: 416 RPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYL 475
Query: 186 QI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VT 243
+ C+++TD G+ + LT L L L+L GC +T
Sbjct: 476 NLCCCNELTDIGLMH--------------------------LTPLVNLQHLDLSGCDNLT 509
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
A L L++L +L +LNL RC C+ +K G L+HL L N
Sbjct: 510 DAGLMHLTSLVNLQHLNL-RC------CDNLTKTG----------------LMHLTSLVN 546
Query: 304 LESLNLD--SCGIGDEGLVNL 322
L L L S + + GL +L
Sbjct: 547 LRQLVLSWYSPDLNEAGLAHL 567
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLD 404
+ LT++ + L ++D L LA L +L+ LNL D +TD GLA LT L L HL+
Sbjct: 316 AYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLN 375
Query: 405 LFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L ++TD G A+LR+ NL+ L + C LTDAG+ H++ L +L LNLS+ LTD
Sbjct: 376 LHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDA 435
Query: 463 TLELISGLTGLVSLNVS--NSRITSAGLRHLKPLKNLRSLTLESC 505
L ++ L L L++S T AGL +L PL +L+ L L C
Sbjct: 436 GLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCC 480
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 12/185 (6%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLS--FTGISDGSLRKLAGLSSLKSLNLDA-R 384
LK EL+D ++ HL+ L NL +NLS + ++D L L L +L+ LNL
Sbjct: 326 LKSWELTDARLA-----HLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCD 380
Query: 385 QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 442
++TD GLA L SL L HL+L ++TD+G A+LR NL+ L + LTDAG+ H+
Sbjct: 381 KLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHL 440
Query: 443 KDLSSLTLLNLSQ-NCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 500
L +L L+LS N T L ++ L L LN+ + +T GL HL PL NL+ L
Sbjct: 441 TPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTPLVNLQHL 500
Query: 501 TLESC 505
L C
Sbjct: 501 DLSGC 505
>gi|290980745|ref|XP_002673092.1| predicted protein [Naegleria gruberi]
gi|284086673|gb|EFC40348.1| predicted protein [Naegleria gruberi]
Length = 498
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/400 (24%), Positives = 185/400 (46%), Gaps = 15/400 (3%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMK 156
E L + L L+ N+ I G K L L L + C I L +LK L
Sbjct: 98 EILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTY 157
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
L + N I K + + LK L I+ + + G Y+ GL + + I + I
Sbjct: 158 L----LITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEI 213
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
F++ +++LT+LN+ G + +S + L L+++ + ++G + S+
Sbjct: 214 TVDGA--KFISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSE 271
Query: 277 IGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+ ++ LN+GFN I D +C +K LT+L N++S IG G+ ++ L L ++
Sbjct: 272 MMNITKLNIGFNSINDGVKCFGEMKQLTDL---NVNSRCIGSNGVEYISSFNQLTHLSIA 328
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ H+S + NL +++S I D ++ ++ ++ L LN+ + IT G+ +
Sbjct: 329 KNLISLYEAMHISQMKNLIKLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYI 388
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+ LT+L I GA + K+L L I + D G K I ++ LT L++
Sbjct: 389 CKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIG 448
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
N + D+ ++ + G+ L LN ++ I+ G ++++ +
Sbjct: 449 YN-EIGDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIREM 487
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 3/233 (1%)
Query: 271 CEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
CE + LK LN+ +N D ++ L L L + C +L L +L
Sbjct: 97 CEILDSMKELKKLNIEYNSNIDPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLT 156
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L ++ +G G +++ + L+ ++++ I + ++GL L LN+ A +IT
Sbjct: 157 YLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIRANEITVD 216
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G ++ + LT L++ G I D GA ++ K L +L+I + + G K++ ++ ++T
Sbjct: 217 GAKFISEMKQLTVLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNIT 276
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
LN+ N + ++ + L LNV++ I S G+ ++ L L++
Sbjct: 277 KLNIGFNS--INDGVKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSI 327
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 142/317 (44%), Gaps = 13/317 (4%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 189 IGPEGAKYISGLEQLTFLNIRAN-EITVDGAKFISEMKQLTVLNIIGNNICDEGAKFISG 247
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L +L+I N I ++ K +S + N+ L I + + D G+ + L
Sbjct: 248 MKQLTNLDIS-VNNIGENGAKYVSEMMNITKLNIGFNSIND-------GVKCFGEMKQLT 299
Query: 214 SMIIRLFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
+ + C+ +++S +LT L++ ++ +S + +L L+++ + D+
Sbjct: 300 DLNVNSRCIGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQMKNLIKLDISDNDIGDN 359
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + S++ L LN+ +IT + ++ + NL L IG +G ++ + +L
Sbjct: 360 GVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHNNIGAKGAKQISEMKHLA 419
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L + VG G + +S + L +++ + I D ++ L G+ L LN I+D
Sbjct: 420 QLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKFLCGMKQLTRLNTVDNNISDE 479
Query: 390 GLAALTSLTGLTHLDLF 406
G + + H+ ++
Sbjct: 480 GEKYIREMNLADHVGIY 496
>gi|290980071|ref|XP_002672756.1| predicted protein [Naegleria gruberi]
gi|284086335|gb|EFC40012.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 172/342 (50%), Gaps = 11/342 (3%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV----F 225
+ +K +S + +L SL I+ +++ D G ++ G+ L S+ I + V
Sbjct: 8 EDKLKFISEMKHLTSLDIADNQIGDEGSKFISGMKH------LTSLNIDRNQIGVEGAKL 61
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ ++ L L++ + +S + L L++NR Q+ +G + S++ L LN+
Sbjct: 62 ISGMKSLISLSIGDNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNI 121
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+N+I E + G+ L SL++ IG E ++ + L L++ + Q+G G +
Sbjct: 122 YYNQIGAEGAKSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKS 181
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+SG+ L S+N+ F I + ++ + L SLN+ + +I G + + LT L++
Sbjct: 182 ISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNI 241
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+ I D G+ Y+ K L SL+I + G K+I ++ LT L +S N + + +
Sbjct: 242 YYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDN-QIGVEGAK 300
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
IS + L SL++++++I G + + +K+L SL + S ++
Sbjct: 301 FISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNVNSNQI 342
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 179/366 (48%), Gaps = 27/366 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D++ + + D G + +L SL+ + QI G + + G+ +L SLS +N
Sbjct: 20 LTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISLSIG-DNQ 77
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G K +G+ +L LD+ R G ++ + +L SLNI + N I K +SG
Sbjct: 78 IGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNI-YYNQIGAEGAKSISG 136
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-----------LT 227
+ L SL I +++ G+ S I S + +L L ++ ++
Sbjct: 137 MKQLTSLDIGGNQI---------GVEESKYI----SEMKQLTSLDIYNNQIGVEGAKSIS 183
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+++LT LN+ + +S + L LN+ ++ +G + ++ L LN+ +
Sbjct: 184 GMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYY 243
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
NEI DE ++ + L SL++ IG EG ++ + L L +SD Q+G G + +S
Sbjct: 244 NEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFIS 303
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+ L S++++ I D + ++ + SL SLN+++ QI D G ++ + LT L ++
Sbjct: 304 EMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYY 363
Query: 408 ARITDS 413
+I ++
Sbjct: 364 NQIGET 369
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 173/381 (45%), Gaps = 31/381 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + +L SLD QI D G + + G+ +LTSL+ RN I +G K +G+ +L+ L
Sbjct: 14 ISEMKHLTSLDIADN-QIGDEGSKFISGMKHLTSLNIDRNQ-IGVEGAKLISGMKSLISL 71
Query: 137 DL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+ + + G + + G+ L SL+I N I K +S + L SL I +++
Sbjct: 72 SIGDNQIGVEGAKL-ISGMKHLTSLDINR-NQIGVEGAKSISRMKQLTSLNIYYNQIGAE 129
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS 255
G + G+ ++LT L++ G + +S +
Sbjct: 130 GAKSISGM--------------------------KQLTSLDIGGNQIGVEESKYISEMKQ 163
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
L L++ Q+ +G + S + L LN+GFN I E + + L SLN+ S IG
Sbjct: 164 LTSLDIYNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIG 223
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
EG + + +L L + ++G G +++S + L S+++ + I + ++ +
Sbjct: 224 VEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQ 283
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
L SL + QI G ++ + LT LD+ +I D G+ ++ K+L SL + +
Sbjct: 284 LTSLGISDNQIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIG 343
Query: 436 DAGVKHIKDLSSLTLLNLSQN 456
D G K I + LT L + N
Sbjct: 344 DEGAKLISGMKQLTSLKIYYN 364
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
++ K+L SL+I + D G K I + LT LN+ +N + + +LISG+ L+SL
Sbjct: 13 FISEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISL 71
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTLESCKV---TANDIKRLQ 516
++ +++I G + + +K+L SL + ++ A I R++
Sbjct: 72 SIGDNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMK 114
>gi|46445969|ref|YP_007334.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399610|emb|CAF23059.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 642
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 158/300 (52%), Gaps = 10/300 (3%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C +D GL HL L L L+ +T G+
Sbjct: 314 NAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLA 373
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L+ L L+L C + GL +L L+ L LN+ WCN +TD+ + L+ L L
Sbjct: 374 HLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTH 433
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFI-LCSMIIRLFCLHVFLTSLQKLTLLNLEGC-P 241
L + C K+T+ G+A+L L + + C + H L+SL L L L C
Sbjct: 434 LDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAH--LSSLVALQHLKLCCCVS 491
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T A L L+ L +L +L+L+ C ++D G + + +L+ L L G +TD L HL
Sbjct: 492 LTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLT 551
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L L+ L L+ C + D GL +LT L NL+ L+LS+ ++ ++GL HL+ L L+ ++L
Sbjct: 552 RLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDL 611
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 160/290 (55%), Gaps = 10/290 (3%)
Query: 226 LTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVL 283
L + + L +L L+ C T A L L+ L +L +LNL+ C+ L+D G + + L+ L
Sbjct: 325 LKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLAPLVVLQHL 384
Query: 284 NLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGS 340
NL + +TD L HL L L LNL C + D GL +LT L L L+L + ++ +
Sbjct: 385 NLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTN 444
Query: 341 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 398
GL HL+ L L+ ++L++ ++D L L+ L +L+ L L +TD GLA L L
Sbjct: 445 RGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLTDAGLAHLAPLV 504
Query: 399 GLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 456
LTHLDL + ITD+G A+L L+ L + G LTD G+ H+ L +L L L++
Sbjct: 505 ALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRC 564
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 505
NLTD L ++ L L L++S R +T+AGL HL PL L+ L L C
Sbjct: 565 DNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCC 614
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 139/301 (46%), Gaps = 63/301 (20%)
Query: 273 KFSKI-----GSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 325
+F KI ++ LN N +TD L+ LK NL+ L L +C D GL +LT L
Sbjct: 294 EFEKILNHFSNEIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPL 353
Query: 326 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 383
L+ L LS + + +GL HL+ L L+ +NLS ++D L L L +L LNL
Sbjct: 354 MALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSW 413
Query: 384 -RQITDTGLAALTSLTGLTHLDL--------------------------FGARITDSGAA 416
++TD GLA LT L LTHLDL + +TD+G A
Sbjct: 414 CNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLA 473
Query: 417 YLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+L + L+ L++C LTDAG+ H+ L +LT L+LS N+TD L ++ L L
Sbjct: 474 HLSSLVALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQH 533
Query: 476 LNVSNSR--------------------------ITSAGLRHLKPLKNLRSLTLESCKVTA 509
L +S R +T AGL HL PL NL+ L L C+
Sbjct: 534 LGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLT 593
Query: 510 N 510
N
Sbjct: 594 N 594
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 172/353 (48%), Gaps = 47/353 (13%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
++E+LN +TD+ + L NLK LQ+ +C TD+G+A+L
Sbjct: 305 EIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHL-------------- 350
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
T L L LNL C +T A L L+ L L +LNL+ C L+D G
Sbjct: 351 ------------TPLMALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLA 398
Query: 273 KFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK- 329
+ + +L LNL + N++TD L HL L L L+L C + + GL +L L L+
Sbjct: 399 HLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQY 458
Query: 330 -----CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 383
C L+D +GL HLS L L+ + L ++D L LA L +L L+L
Sbjct: 459 LDLNYCRNLTD-----AGLAHLSSLVALQHLKLCCCVSLTDAGLAHLAPLVALTHLDLSW 513
Query: 384 -RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 440
ITD GLA LT L L HL L G R +TD G A+L L+ L + LTDAG+
Sbjct: 514 CFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTDAGLA 573
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLK 492
H+ L +L L+LS+ LT+ L ++ L L L++ +++T A L H K
Sbjct: 574 HLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFK 626
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 58 SLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS ++TD+GL HL LQ L + C +++D GL HL L L L R
Sbjct: 505 ALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRC 564
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ +T G+ LINL LDL C ++ + GL +L L+ L+ L+++ CN +T + +
Sbjct: 565 DNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAH 624
Query: 176 LSGLTNLKSLQISCSK 191
L L + K
Sbjct: 625 FKFLVAKPHLDLRWYK 640
>gi|290977067|ref|XP_002671260.1| predicted protein [Naegleria gruberi]
gi|284084827|gb|EFC38516.1| predicted protein [Naegleria gruberi]
Length = 378
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 191/421 (45%), Gaps = 52/421 (12%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQSLDF+ + LS+ N +T G+KA A L L K++ R
Sbjct: 3 NLQSLDFS----------------TTTNELSYNHNYIVT-NGLKAIAELKQLKKINFHRN 45
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL + +L L+I CN I K +S L LK L I+ + + D G Y+
Sbjct: 46 QIGQNGLQTISQFNQLLCLDIS-CNGIGIEGAKAVSELNQLKELDITANDIGDIGAKYI- 103
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
+ +++LT L + + + S+ L L LN+
Sbjct: 104 -------------------------SQMKELTKLYVRYNDINSQGASSIGELHQLTKLNI 138
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEI---TDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ + D+G + S + L L++ N I + + + +K LTNL ++ IG EG
Sbjct: 139 SYNNIGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMKQLTNL---SISENHIGIEG 195
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ ++ L L L++S Q+G+ G +S L L +++ I+D L+ L L L
Sbjct: 196 VETISQLSQLTRLKISSNQIGARGAILISKLDKLTKLSIGSNRINDEGLKSLCRLKHLTK 255
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L D QI + G+ ++ L LT LD+ G I+ GA ++ K LR+L I + + G
Sbjct: 256 LKADFNQIGNEGVKSIIQLKQLTFLDIGGNNISHKGAQFINQLKQLRTLYISENQIGNKG 315
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNL 497
K I +L+ L +L++ +N L+D+ ++ I + L L++ N IT L LK+L
Sbjct: 316 AKLISELTQLRILHIRKN-ELSDEGVKSILLMKQLTELDLRENYDITVRMENQLSTLKSL 374
Query: 498 R 498
+
Sbjct: 375 K 375
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 1/257 (0%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L+ N + +G + +++ LK +N N+I L + L L++ GIG EG
Sbjct: 16 LSYNHNYIVTNGLKAIAELKQLKKINFHRNQIGQNGLQTISQFNQLLCLDISCNGIGIEG 75
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
++ L LK L+++ +G G +++S + L + + + I+ + L L
Sbjct: 76 AKAVSELNQLKELDITANDIGDIGAKYISQMKELTKLYVRYNDINSQGASSIGELHQLTK 135
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
LN+ I D G+ ++ + LT L + I + ++ K L +L I + G
Sbjct: 136 LNISYNNIGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMKQLTNLSISENHIGIEG 195
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
V+ I LS LT L +S N + + LIS L L L++ ++RI GL+ L LK+L
Sbjct: 196 VETISQLSQLTRLKISSN-QIGARGAILISKLDKLTKLSIGSNRINDEGLKSLCRLKHLT 254
Query: 499 SLTLESCKVTANDIKRL 515
L + ++ +K +
Sbjct: 255 KLKADFNQIGNEGVKSI 271
>gi|290980851|ref|XP_002673145.1| predicted protein [Naegleria gruberi]
gi|284086726|gb|EFC40401.1| predicted protein [Naegleria gruberi]
Length = 468
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 160/336 (47%), Gaps = 8/336 (2%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G H+ + L +L N I G + LR L NLT L+ N+ I +G K + L
Sbjct: 127 EGAKHVSEMKQLTNLYVN-ANNIGTEGAKFLRELKNLTYLNISEND-IGVEGAKYISELK 184
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L LD+ G + L +L +L+I+ N T+ K +S L L+ L IS S
Sbjct: 185 QLTDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEG-AKYISELNQLQVLNISYSS 243
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
+ D G Y+ + + ++I S+I +++ +++LT L +E + +S
Sbjct: 244 LGDKGAQYISEMKQLTHLYISDSLIRSEGA--KYISEMKQLTNLFIENNDIDDEGAKHIS 301
Query: 252 ALGSL--FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+ L Y+ NR +SD+G + S++ +L VL +G N I +E HL L NL S+ +
Sbjct: 302 TMKELTKLYMQGNRL-ISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYV 360
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
IGDEG L+ L L L++ +G+ G +H+S L L + + + I + +
Sbjct: 361 SYTEIGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKY 420
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
++ L L L++ I G L+ + LTHL++
Sbjct: 421 ISELKQLTDLDISYNNIGTEGADYLSQMKQLTHLEI 456
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 120/239 (50%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G + S++ L L + N I E L+ L NL LN+ IG EG ++ L L
Sbjct: 127 EGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L++S +G+ G +++S L L ++++ I + ++ L+ L+ LN+ + D
Sbjct: 187 TDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLGD 246
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
G ++ + LTHL + + I GA Y+ K L +L I + D G KHI + L
Sbjct: 247 KGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKEL 306
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
T L + N ++D+ + +S L L L + ++RI + G +HL LKNL S+ + ++
Sbjct: 307 TKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEI 365
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 157/365 (43%), Gaps = 29/365 (7%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +H+ + LT+L NN I +G K L NL L++ G + L +L
Sbjct: 128 GAKHVSEMKQLTNLYVNANN-IGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
L+I + N T+ K +S L L +L I + + G Y+
Sbjct: 187 TDLDISYNNIGTEG-AKYISDLKQLTTLDIESNNIGTEGAKYI----------------- 228
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
+ L +L +LN+ + +S + L +L ++ + +G + S++
Sbjct: 229 ---------SELNQLQVLNISYSSLGDKGAQYISEMKQLTHLYISDSLIRSEGAKYISEM 279
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT 336
L L + N+I DE H+ + L L + I DEG L+ L NL L + D
Sbjct: 280 KQLTNLFIENNDIDDEGAKHISTMKELTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDN 339
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
++G+ G +HLS L NL SI +S+T I D + L+ L+ L L + I G +++
Sbjct: 340 RIGNEGAKHLSELKNLTSIYVSYTEIGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISN 399
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L LT L + I + GA Y+ K L L+I + G ++ + LT L + N
Sbjct: 400 LKELTMLKIQYNNIGNEGAKYISELKQLTDLDISYNNIGTEGADYLSQMKQLTHLEIETN 459
Query: 457 CNLTD 461
+ +
Sbjct: 460 SDAEE 464
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 139/338 (41%), Gaps = 54/338 (15%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +D+S +++ G ++ D L +LD
Sbjct: 181 SELKQLTDLDISYNNIGTEGAKYISDLKQLTTLDI------------------------- 215
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K + L +L+ LNI + + D
Sbjct: 216 -ESNNIGTEGAKYIS------------------------ELNQLQVLNISYS-SLGDKGA 249
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ +S + L L IS S + G Y+ + + +FI + I H+ +++++LT
Sbjct: 250 QYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHI--STMKELT 307
Query: 234 LLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L ++G ++ LS L +L L + ++ ++G + S++ +L + + + EI D
Sbjct: 308 KLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEIGD 367
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E +L L L L + GIG EG +++ L L L++ +G+ G +++S L L
Sbjct: 368 EGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISELKQL 427
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
+++S+ I L+ + L L ++ + G
Sbjct: 428 TDLDISYNNIGTEGADYLSQMKQLTHLEIETNSDAEEG 465
>gi|290978443|ref|XP_002671945.1| predicted protein [Naegleria gruberi]
gi|284085518|gb|EFC39201.1| predicted protein [Naegleria gruberi]
Length = 381
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 4/282 (1%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+Q L L++ G + L +S + L L+++ + +G EK S + L LN+ N
Sbjct: 1 MQNLKSLSIVGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I DE + + L L + C I +EG ++ L NL L L +G G ++S
Sbjct: 61 YILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYISE 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGLTHLDL 405
+ NL +N+ T ++ R ++GL +LKSL + QI G ++ + L GLT LD+
Sbjct: 121 MVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDV 180
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G I D G YL NL L+I + G++ I + L LN+S N +L +
Sbjct: 181 SGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSN-DLGSSGAK 239
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
LISG++ L SLN+S +R+ G + + + N+ L + + +
Sbjct: 240 LISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDI 281
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 176/369 (47%), Gaps = 31/369 (8%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ L+SL+I N + D +K +S + L L +S +K G + G+ + + I
Sbjct: 1 MQNLKSLSI-VGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNIND 59
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+ I+ F+ ++++LTLL ++ C + ++S L +L +LNL+ + D G
Sbjct: 60 NYILDEGA--KFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASY 117
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG------------------ 315
S++ +L LN+G ++T E H+ GL NL+SL + + IG
Sbjct: 118 ISEMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTS 177
Query: 316 ---------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
D+G+ L+ + NL L++ VG G+ + G+ L S+N+S +
Sbjct: 178 LDVSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSG 237
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+ ++G+S+L SLN+ A ++ G + + +T L + I D GA ++ K L+S
Sbjct: 238 AKLISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQLKS 297
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L ++ G + I ++ LT L++ N + K + + L L SLNV ++ I
Sbjct: 298 LNAVYNRISSKGFESISEMKQLTSLDIGYNS-IDSKGAKSVRKLKNLTSLNVRSNMIDDE 356
Query: 487 GLRHLKPLK 495
GL+ + LK
Sbjct: 357 GLKAIGQLK 365
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 167/375 (44%), Gaps = 56/375 (14%)
Query: 100 EHLRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
EHL+ +S + L+ N +G + +G++ L L++ + G + + +L
Sbjct: 17 EHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDNYILDEGAKFIGTMKQL 76
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
L +K+C I + + +S L NL L + + + D G +Y+
Sbjct: 77 TLLKMKYCE-IREEGARAISELKNLTFLNLHGNFIGDKGASYI----------------- 118
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
+ + LT LN+ +TA +S L +L L ++ Q+ G + S +
Sbjct: 119 ---------SEMVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTM 169
Query: 278 GSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
L+ L++ N I D+ + +L ++NL L++ S +G +G+ ++ G+ L L +S
Sbjct: 170 KDLEGLTSLDVSGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVS 229
Query: 335 DTQVGSSGLRHLSGLTNLESINLS----------FTG--------------ISDGSLRKL 370
+GSSG + +SG++NL S+N+S F G I D + +
Sbjct: 230 SNDLGSSGAKLISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFI 289
Query: 371 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
+ LKSLN +I+ G +++ + LT LD+ I GA +R KNL SL +
Sbjct: 290 CKMKQLKSLNAVYNRISSKGFESISEMKQLTSLDIGYNSIDSKGAKSVRKLKNLTSLNVR 349
Query: 431 GGGLTDAGVKHIKDL 445
+ D G+K I L
Sbjct: 350 SNMIDDEGLKAIGQL 364
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 2/217 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ NL+SL++ G+ DE L ++ + L L++S+ + G G +SG+ L ++N++
Sbjct: 1 MQNLKSLSIVGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I D + + + L L + +I + G A++ L LT L+L G I D GA+Y+
Sbjct: 61 YILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYISE 120
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLT--LLNLSQNCNLTDKTLELISGLTGLVSLNV 478
NL L + LT G +H+ L +L L++ +Q + K + + L GL SL+V
Sbjct: 121 MVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDV 180
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
S + I G+++L + NL L + S V I+ +
Sbjct: 181 SGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESI 217
>gi|290984286|ref|XP_002674858.1| predicted protein [Naegleria gruberi]
gi|284088451|gb|EFC42114.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 113/201 (56%), Gaps = 2/201 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L NL +LN+ SC IG+EG + L NL L++ + +GS G+++++ L+NL S+N+
Sbjct: 182 LNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYNN 241
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I +++ L +LK+LN+D I D G ++ L LT L+++ I GA +
Sbjct: 242 NIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAISK 301
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
NLR+L I + + G K I L++LT LN+S N N+ D+ + I+ L+ L L + N
Sbjct: 302 LGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNN-NIGDEGAKEITKLSNLTGLKIDN 360
Query: 481 SRITSAGLRHLKP-LKNLRSL 500
+ I + ++ LKNL+ L
Sbjct: 361 NNIGYEAAKEIRQLLKNLKYL 381
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 99/196 (50%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+ L +L LN+ C + ++G ++ +K+ +L L + N I E + ++ L+NL SLN+
Sbjct: 179 IGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNV 238
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ IG EG + L NLK L + + +G G + +S L NL S+N+ I +
Sbjct: 239 YNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKA 298
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
++ L +L++L + I + G ++ LT LT L++ I D GA + NL L+I
Sbjct: 299 ISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLKI 358
Query: 430 CGGGLTDAGVKHIKDL 445
+ K I+ L
Sbjct: 359 DNNNIGYEAAKEIRQL 374
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 1/209 (0%)
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
+ L F+ L L LN+ C + ++ L +L L ++ + +G + +++ +
Sbjct: 173 YKLAKFIGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSN 232
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L LN+ N I E + L NL++LN+D+ IGDEG ++ L NL L + +G
Sbjct: 233 LTSLNVYNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIG 292
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G + +S L NL ++ + I + ++++ L++L SLN+ I D G +T L+
Sbjct: 293 YEGAKAISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSN 352
Query: 400 LTHLDLFGARITDSGAAYLRN-FKNLRSL 427
LT L + I A +R KNL+ L
Sbjct: 353 LTGLKIDNNNIGYEAAKEIRQLLKNLKYL 381
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 54/252 (21%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL +L+ C I + G + + LSNLT L NN I ++G+K A L NL L++
Sbjct: 183 NNLITLNITSC-NIGEEGSKEIAKLSNLTELKIDNNN-IGSEGVKYIAQLSNLTSLNV-- 238
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
+ N I K + L NLK+L I + + D G +
Sbjct: 239 -----------------------YNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEI 275
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
S +I L L+++ S+ EG ++S LG+L L
Sbjct: 276 -------------SKLINLTSLNMYKNSIG------YEGAK-------AISKLGNLRALT 309
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
+ + ++G ++ SK+ +L LN+ N I DE + L+NL L +D+ IG E
Sbjct: 310 IYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLKIDNNNIGYEAAK 369
Query: 321 NLTGLC-NLKCL 331
+ L NLK L
Sbjct: 370 EIRQLLKNLKYL 381
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L + + +++ G+ ++ SNL SL+ + I G + + L NL +L+ N
Sbjct: 207 SNLTELKIDNNNIGSEGVKYIAQLSNLTSLNV-YNNNIGTEGAKEIGKLLNLKTLNID-N 264
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G + + LINL L++ + + + G + L L +L I + N I + K +
Sbjct: 265 NYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAISKLGNLRALTI-YNNYIGEEGAKEI 323
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLS 204
S LTNL SL IS + + D G + LS
Sbjct: 324 SKLTNLTSLNISNNNIGDEGAKEITKLS 351
>gi|149176763|ref|ZP_01855374.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844404|gb|EDL58756.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 416
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 142/291 (48%), Gaps = 5/291 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L S+Q LTL N + + L +L + ++D+G + +++ SL+ L L
Sbjct: 112 LHSIQNLTLGNPHNPTIITDQGATYLKQQKLGHLGITGGSMTDNGLNELAEMNSLRTLGL 171
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
IT + L L+ L+L ++GL NL+ +L L LS+T V S+GL+
Sbjct: 172 HHLAITGDQLPP-NTFPKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQE 230
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LS NL ++ L I + KLA + L L+L + D L+ L +T L L
Sbjct: 231 LSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRL 290
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
++ITD G +L KNL +L + G +TD+G+K + L L L+LS + ++D+ L
Sbjct: 291 DQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQLPKLDYLDLS-DTQISDEGLR 349
Query: 466 LISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTANDIK 513
+S + L LN+SN+R+T L L+++ + VT DI+
Sbjct: 350 QLSKIPALRMLNLSNTRVTDQAKQILLQFPALESIEAFNTSISPVTIEDIR 400
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 107/217 (49%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+ KL +L+L T L +LS SL YL+L+ +S G ++ SK +L+ L LG
Sbjct: 185 TFPKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGN 244
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+I L + L L+L + D + L+ L + L L +Q+ GLRHL+
Sbjct: 245 LKIKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLA 304
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+ NLE++ L I+D L+ L+ L L L+L QI+D GL L+ + L L+L
Sbjct: 305 TMKNLETLFLPGAKITDSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSN 364
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
R+TD L F L S+E ++ ++ I+D
Sbjct: 365 TRVTDQAKQILLQFPALESIEAFNTSISPVTIEDIRD 401
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 120/252 (47%), Gaps = 11/252 (4%)
Query: 144 IHGGLVNLKGLMKLESLN----IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
I GG + GL +L +N + + D P + LK L +S ++ T+ G
Sbjct: 147 ITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPPNTFPKLKMLDLSDTRFTNQG--- 203
Query: 200 LKGLSI-SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
LK LS +S++++ S L+ L L L + AA L+ + L+
Sbjct: 204 LKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQ 263
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L+L ++D + S++ + L L ++ITD+ L HL + NLE+L L I D G
Sbjct: 264 LDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSG 323
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS---LRKLAGLSS 375
L L+ L L L+LSDTQ+ GLR LS + L +NLS T ++D + L + L S
Sbjct: 324 LKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPALES 383
Query: 376 LKSLNLDARQIT 387
+++ N +T
Sbjct: 384 IEAFNTSISPVT 395
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 144/338 (42%), Gaps = 65/338 (19%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLS------VDLSGSDVTDSGLIHLKDCSNLQS 85
++Q+L LG N +I QG++ L + ++G +TD+GL L + ++L++
Sbjct: 114 SIQNLTLG-----NPHNPTIITDQGATYLKQQKLGHLGITGGSMTDNGLNELAEMNSLRT 168
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L GL HL AIT + L LDL +
Sbjct: 169 L-----------GLHHL---------------AITGDQLPP-NTFPKLKMLDLSDTRFTN 201
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
GL NL L L++ N ++ + ++ LS NL++L++ K+ + A
Sbjct: 202 QGLKNLSPNASLVYLHLSNTN-VSSAGLQELSKFPNLRALRLGNLKIKAAAFAK------ 254
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
L ++++L L+L+G V A LS L + L L++ Q
Sbjct: 255 --------------------LANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQ 294
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
++D G + + +L+ L L +ITD L L L L+ L+L I DEGL L+ +
Sbjct: 295 ITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKI 354
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L+ L LS+T+V + L LESI T IS
Sbjct: 355 PALRMLNLSNTRVTDQAKQILLQFPALESIEAFNTSIS 392
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 262 NRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI-GDEG 318
N ++D G K K+G L + +TD L L + +L +L L I GD+
Sbjct: 125 NPTIITDQGATYLKQQKLGHLGITG---GSMTDNGLNELAEMNSLRTLGLHHLAITGDQL 181
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
N LK L+LSDT+ + GL++LS +L ++LS T +S L++L+ +L++
Sbjct: 182 PPN--TFPKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRA 239
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L L +I A L ++ L LDL G + D+ A L + L + +TD G
Sbjct: 240 LRLGNLKIKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQG 299
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
++H+ T K LE +L + ++IT +GL+ L L L
Sbjct: 300 LRHLA----------------TMKNLE---------TLFLPGAKITDSGLKVLSQLPKLD 334
Query: 499 SLTLESCKVTANDIKRL 515
L L +++ +++L
Sbjct: 335 YLDLSDTQISDEGLRQL 351
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 9/242 (3%)
Query: 286 GFNEITDECLVHLKGLTNLESLNL----DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
G ++ D+ L+ L L ++++L L + I D+G L L L ++ + +
Sbjct: 97 GSFQVDDDFLLELGNLHSIQNLTLGNPHNPTIITDQGATYLKQ-QKLGHLGITGGSMTDN 155
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
GL L+ + +L ++ L I+ L LK L+L + T+ GL L+ L
Sbjct: 156 GLNELAEMNSLRTLGLHHLAITGDQLPP-NTFPKLKMLDLSDTRFTNQGLKNLSPNASLV 214
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
+L L ++ +G L F NLR+L + + A + ++ L L+L Q + D
Sbjct: 215 YLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDL-QGTAVND 273
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 521
+S L + L + S+IT GLRHL +KNL +L L K+T + +K L LP
Sbjct: 274 AVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQ--LP 331
Query: 522 NL 523
L
Sbjct: 332 KL 333
>gi|406831735|ref|ZP_11091329.1| hypothetical protein SpalD1_08854 [Schlesneria paludicola DSM
18645]
Length = 422
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 189/423 (44%), Gaps = 59/423 (13%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+E D A + + P N+K + ++ S +L S+D+S +T+ GL L L+
Sbjct: 45 VERSSDRATVRVSFNEGPRFNEKHLHLLKSL-PNLTSLDVSAIVITEDGLRELGQLKFLR 103
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLERCT 142
L + I+D GL L L +LT L+ ++T +G+K F + +++ DLE
Sbjct: 104 RLVVD-GRSITDEGLMELVDLRSLTELTIS-ATSVTDEGLKQFQSFLPQLRILSDLESVR 161
Query: 143 RI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
R+ GG + + ++ +++ D D++ L L +L+SL + + +TD +
Sbjct: 162 RLAGFGGEIE-RSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGAL--- 217
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
+ + LQKL L L +T L +L L L L+
Sbjct: 218 -----------------------LTVGRLQKLIQLQLPSTRITDRGLKALRNLKQLSILD 254
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
L+R ++ D G ++ K+ L L L ++TD L+ L+ L ++ L L C I D GLV
Sbjct: 255 LSRTRIGDVGLDEIKKL-PLTSLMLHDTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLV 313
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L NL L L+ T+ I+DG LR + L L+ L
Sbjct: 314 TLGRFQNLSELCLNSTR------------------------ITDGGLRNVGQLRKLRILQ 349
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
L QITD GL L L L L L G R+TD L+ ++NL +++ G T+AGV
Sbjct: 350 LGDSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQNLVHIDLRQTGFTEAGVT 409
Query: 441 HIK 443
+K
Sbjct: 410 ELK 412
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 173/402 (43%), Gaps = 35/402 (8%)
Query: 99 LEHLRGLSNLTS------LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
LE L G+ +S +SF + + L NL LD+ GL L
Sbjct: 38 LERLGGIVERSSDRATVRVSFNEGPRFNEKHLHLLKSLPNLTSLDVSAIVITEDGLRELG 97
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
L L L + ITD + L L +L L IS + VTD G+ +
Sbjct: 98 QLKFLRRLVVDG-RSITDEGLMELVDLRSLTELTISATSVTDEGLKQFQS---------- 146
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNL-NRCQLSDDG 270
FL L+ L+ +LE A + + G + ++L N+ Q D
Sbjct: 147 ------------FLPQLRILS--DLESVRRLAGFGGEIERSDGRVIRISLHNKPQFGDGD 192
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
E + L+ L+LG ITD L+ + L L L L S I D GL L L L
Sbjct: 193 IESLMSLRHLESLDLGGTSITDGALLTVGRLQKLIQLQLPSTRITDRGLKALRNLKQLSI 252
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+LS T++G GL + L L S+ L T ++D L L L ++ L L ITDTG
Sbjct: 253 LDLSRTRIGDVGLDEIKKLP-LTSLMLHDTQVTDFGLLALQDLKEVQFLGLYKCAITDTG 311
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
L L L+ L L RITD G + + LR L++ +TDAG+ ++ L++L
Sbjct: 312 LVTLGRFQNLSELCLNSTRITDGGLRNVGQLRKLRILQLGDSQITDAGLLELRHLNNLVG 371
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
L L + +TD ++ + LV +++ + T AG+ LK
Sbjct: 372 LVL-RGTRVTDDSVNTLKRYQNLVHIDLRQTGFTEAGVTELK 412
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 148/334 (44%), Gaps = 55/334 (16%)
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
EG L L +L +L L+++ +++DG + ++ L+ L + ITDE L+
Sbjct: 60 EGPRFNEKHLHLLKSLPNLTSLDVSAIVITEDGLRELGQLKFLRRLVVDGRSITDEGLME 119
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCL----------------ELSD----- 335
L L +L L + + + DEGL L L+ L E SD
Sbjct: 120 LVDLRSLTELTISATSVTDEGLKQFQSFLPQLRILSDLESVRRLAGFGGEIERSDGRVIR 179
Query: 336 ------TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
Q G + L L +LES++L T I+DG+L + L L L L + +ITD
Sbjct: 180 ISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGALLTVGRLQKLIQLQLPSTRITDR 239
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
GL AL +L L+ LDL RI D G ++ L SL + +TD G+ ++DL +
Sbjct: 240 GLKALRNLKQLSILDLSRTRIGDVGLDEIKKLP-LTSLMLHDTQVTDFGLLALQDLKEVQ 298
Query: 450 LL-------------------NLSQNC----NLTDKTLELISGLTGLVSLNVSNSRITSA 486
L NLS+ C +TD L + L L L + +S+IT A
Sbjct: 299 FLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGGLRNVGQLRKLRILQLGDSQITDA 358
Query: 487 GLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 517
GL L+ L NL L L +VT N +KR Q+
Sbjct: 359 GLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQN 392
>gi|320165727|gb|EFW42626.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 553
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 189/425 (44%), Gaps = 32/425 (7%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL N IS GL+ LT+L F NN + + A AGL L L L+R
Sbjct: 60 SLQGNLLTSISANAFT---GLTALTTL-FLENNQLPSISANALAGLTALQYLSLQRNQLT 115
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204
GL L LN+ + N L+GLT +++L + + +T S
Sbjct: 116 SISANTFTGLTALTGLNLDF-NQFASISADTLAGLTTMRTLSLGSNGIT----------S 164
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
IS+ F TSL LT+L+L + + D+L+ L ++ L+L R
Sbjct: 165 ISANAF----------------TSLTALTVLDLSYNELPSISADALTGLTAMRTLSLQRN 208
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
QL+ F+ + +L L+L +NE+ L GLT L+ L+L++ I TG
Sbjct: 209 QLTSISANTFTGLTALTGLDLSYNELPSISANALTGLTALQYLSLNNNRITRISANTFTG 268
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L L L L+ Q+ + L+GLT L S++L+ I+ AGL++L SL L
Sbjct: 269 LTALTTLYLNYNQLPNISANALTGLTALRSLSLTQNNITTIHANAFAGLTALASLVLVQN 328
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
Q++ ALT LT L +L L RIT A L L + L +
Sbjct: 329 QLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTALTVLYLSYNELPSISANALAG 388
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L++L L+L+ N +T +GLT L L + N++ITS L L+ L+L S
Sbjct: 389 LTALQYLSLNNN-QITSIAAAAFAGLTALTHLPLDNNQITSISAEAFTGLSALQLLSLNS 447
Query: 505 CKVTA 509
++T+
Sbjct: 448 NQITS 452
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 176/400 (44%), Gaps = 32/400 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LDFN IS + L GL+ + +LS N IT+ AF L L LDL
Sbjct: 133 LDFNQFASISA---DTLAGLTTMRTLSLGSN-GITSISANAFTSLTALTVLDLSYNELPS 188
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
L GL + +L+++ N +T +GLT L L +S +++ L GL
Sbjct: 189 ISADALTGLTAMRTLSLQR-NQLTSISANTFTGLTALTGLDLSYNELPSISANALTGL-- 245
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
T+LQ L+L N ++A L+AL +L YLN N Q
Sbjct: 246 ---------------------TALQYLSLNNNRITRISANTFTGLTALTTL-YLNYN--Q 281
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
L + + + +L+ L+L N IT GLT L SL L + LTGL
Sbjct: 282 LPNISANALTGLTALRSLSLTQNNITTIHANAFAGLTALASLVLVQNQLSSISADALTGL 341
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L+ L L++ ++ +GLT L + LS+ + S LAGL++L+ L+L+ Q
Sbjct: 342 TALQYLSLNNNRITRISANAFTGLTALTVLYLSYNELPSISANALAGLTALQYLSLNNNQ 401
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
IT AA LT LTHL L +IT A L+ L + +T L
Sbjct: 402 ITSIAAAAFAGLTALTHLPLDNNQITSISAEAFTGLSALQLLSLNSNQITSIAANAFTGL 461
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
++LT L L+QN N+ + +GLT L L + ++ T+
Sbjct: 462 NALTSLYLNQN-NIAGISANAFTGLTKLTQLYLDDNPFTT 500
>gi|290980468|ref|XP_002672954.1| predicted protein [Naegleria gruberi]
gi|284086534|gb|EFC40210.1| predicted protein [Naegleria gruberi]
Length = 349
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L ++ + L LN+ ++ +G + S++ L LN+ +N I DE ++ + L S
Sbjct: 96 LKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLIS 155
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
LN+ IGDEG ++ + L L++S +G G +++SG+ L S+N+ +T I
Sbjct: 156 LNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEG 215
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+ ++ + L SLN+ +I G+ ++ + LT L++ R D GA ++ K L S
Sbjct: 216 AKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTS 275
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L ICG VK I ++ LT LN+ N + + + IS + L SLN+ +RI
Sbjct: 276 LNICG------KVKFISEMKQLTSLNIRGN-RIGVEGAKYISEMKQLTSLNIRGNRIGDQ 328
Query: 487 GLRHLKPL 494
GL H L
Sbjct: 329 GLNHENSL 336
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 22/236 (9%)
Query: 293 ECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
E + LK +T ++ SLN+ IG EG ++ + L L +S +G G +++S +
Sbjct: 91 EAIEQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
L S+N+ I D + ++ + L SL++ I D G ++ + LT L+++
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------------- 456
I GA ++ K L SL I + GVK+I ++ LT LN+S N
Sbjct: 211 IGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEM 270
Query: 457 -----CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
N+ K ++ IS + L SLN+ +RI G +++ +K L SL + ++
Sbjct: 271 KQLTSLNICGK-VKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRI 325
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 1/150 (0%)
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ + + L SLN+ +I G ++ + LT L++ I D GA Y+ K L
Sbjct: 95 QLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLI 154
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
SL I + D G K+I ++ LT L++S N + D+ + ISG+ L SLN+ + I
Sbjct: 155 SLNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAKYISGMKQLTSLNIYYTLIGI 213
Query: 486 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
G + + +K L SL + ++ +K +
Sbjct: 214 EGAKFISEMKQLTSLNISENEIGIEGVKYI 243
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 49/235 (20%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ +++LT LN+ + +S + L LN+ ++ D+G + S++ L L+
Sbjct: 122 YISEMKQLTSLNISYNVIGDEGAKYISEMKQLISLNIRENEIGDEGAKYISEMKQLTSLD 181
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ +N I DE ++ G+ L SLN+ IG EG ++ + L L +S+ ++G G++
Sbjct: 182 ISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEGAKFISEMKQLTSLNISENEIGIEGVK 241
Query: 345 HLSGLTNLESINLSFTGISD------------------------GSLRKLAGLS------ 374
++S + L S+N+S+ D +++L L+
Sbjct: 242 YISEMKQLTSLNISYNRTGDEGAKFISEMKQLTSLNICGKVKFISEMKQLTSLNIRGNRI 301
Query: 375 ------------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
L SLN+ +I D GL SL L+GA + +Y
Sbjct: 302 GVEGAKYISEMKQLTSLNIRGNRIGDQGLNHENSL-------LWGANKFNKSESY 349
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 22/257 (8%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L+ + + LTSL+ R N I +G K + + L L++ G + + +L
Sbjct: 96 LKFVTEMKQLTSLNIR-GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLI 154
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
SLNI+ N I D K +S + L SL IS + + D G Y+ G+ L S+ I
Sbjct: 155 SLNIR-ENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQ------LTSLNIY 207
Query: 219 LFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
+ + F++ +++LT LN+ + + +S + L LN++ + D+G +
Sbjct: 208 YTLIGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFI 267
Query: 275 SKIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
S++ L LN+ C + + + L SLN+ IG EG ++ + L L
Sbjct: 268 SEMKQLTSLNI--------CGKVKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLN 319
Query: 333 LSDTQVGSSGLRHLSGL 349
+ ++G GL H + L
Sbjct: 320 IRGNRIGDQGLNHENSL 336
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 36/230 (15%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y + D+ I S+ L+S+++ +++ D G ++ + L SLD ++ I I D G +
Sbjct: 136 YNVIGDEGAKYI-SEMKQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAK 193
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
++ G+ LTSL+ I +G K + + L L++ G+ + + +L SL
Sbjct: 194 YISGMKQLTSLNIYY-TLIGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSL 252
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
NI + N D K +S + L SL I C KV
Sbjct: 253 NISY-NRTGDEGAKFISEMKQLTSLNI-CGKVK--------------------------- 283
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
F++ +++LT LN+ G + +S + L LN+ ++ D G
Sbjct: 284 ----FISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQG 329
>gi|207743293|ref|YP_002259685.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
gi|206594690|emb|CAQ61617.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
Length = 625
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 135/486 (27%), Positives = 212/486 (43%), Gaps = 36/486 (7%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 139 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 196
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 197 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 254
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L N I D L+ LKSL
Sbjct: 255 LAG-APLVSLNLHN-------------------------NGIGDEGALALATSGTLKSLN 288
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
S + + D+G+ ++ + + + +MI + + LT L+L + A
Sbjct: 289 ASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNT--SLTELDLSTNRLGDAG 346
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L+ SL LN+ ++ DDG E ++ +LK LNL +N I + L G T L
Sbjct: 347 AQVLAGSRSLTSLNVRNNEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSE 406
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L+L +C I G L ++ L L ++G SG R ++ + L ++LS I D
Sbjct: 407 LDLRACAIDPYGASALARNTSVASLHLGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAG 466
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+ LAG SL SLNLD +I D G AAL LT L+L RI +GA +L L
Sbjct: 467 AQVLAGNDSLMSLNLDDNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTE 526
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L++ + G + + + LT LN+S N T L SL+ N+R+ A
Sbjct: 527 LDLSENRIGPEGAEALSLSTVLTTLNVSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEA 586
Query: 487 GLRHLK 492
G + L+
Sbjct: 587 GAKMLE 592
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 179/412 (43%), Gaps = 75/412 (18%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-----YLKGL 203
V KG + LE+L + P G+ +L+ + + S V+++G+A LK L
Sbjct: 145 VRFKGELTLEALKA----------LPP--GVEHLEIGRSTGSGVSNAGLALLATRPLKSL 192
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
S++ + + + RL LTSL +L GC + +L+ S+ L+L+
Sbjct: 193 SLNGIE--IDAEGARLLATCASLTSL------SLTGCSIGDRAATALAQSRSIASLDLSV 244
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
+ DG + L LNL N I DE + L L+SLN + GIGD G++
Sbjct: 245 NMIGPDGARALAGA-PLVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFA 303
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L L L+ +G +G R L T+L ++LS + D + LAG SL SLN+
Sbjct: 304 DNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRN 363
Query: 384 RQITDTGLAAL---TSL---------------------TGLTHLDLFGARITDSGAAYLR 419
+I D G AL T+L T L+ LDL I GA+ L
Sbjct: 364 NEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALA 423
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG---------- 469
++ SL + + D+G + I + +LTLL+LS+N N+ D ++++G
Sbjct: 424 RNTSVASLHLGSNRIGDSGARAIATIRTLTLLDLSRN-NIHDAGAQVLAGNDSLMSLNLD 482
Query: 470 --------------LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L SLN++++RI G +HL L L L ++
Sbjct: 483 DNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRI 534
>gi|329906145|ref|ZP_08274368.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547327|gb|EGF32161.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
Length = 518
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 164/335 (48%), Gaps = 34/335 (10%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
Q +L +DL+ + + ++ L+HL +LQ L+ + C Q++D G+ HL S L L
Sbjct: 186 PQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSSCQQLTDAGVAHLPLASTLQHLD 245
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+T G++ + L +L LD+ C + G + +MK SLN +C +D+
Sbjct: 246 LSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGATLGDFAVMK--SLNAGFCRRFSDAG 303
Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
+ ++G+ +L+ L+I+ C +T +A L L +
Sbjct: 304 LAAVAGMHDLQQLEITHCVALTRDALA-------------------------TCLPQLTQ 338
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNE 289
L LN G P++ A L +L A GSL L L C+ L++ G + + +L L+L
Sbjct: 339 LQTLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRG 398
Query: 290 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLS 347
+ + L L T LE+L+L C G+ + L + L L+ L L ++ +GL HL
Sbjct: 399 VVGDALPALGRQTALETLDLSRCSGVTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQ 458
Query: 348 GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 381
L L++++L+ G ++DG+LR++A +L+ L++
Sbjct: 459 ALPALKTLDLTDCGYLTDGALRRIAHFPALEKLHI 493
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 135/508 (26%), Positives = 215/508 (42%), Gaps = 130/508 (25%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL----------------- 99
S+ ++LSG + +TD+GL HL +L+ +D CIQ++D GL
Sbjct: 43 SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102
Query: 100 -----EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKG 153
L + L L+ +R IT ++A A NL L++ R L +L+
Sbjct: 103 RDASGAALAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASLRP 162
Query: 154 LMKLESLNIK------------W-------------CNCITDSDMKPLSGLTNLKSLQI- 187
L++L L++ W C I ++++ L+ L +L+ L +
Sbjct: 163 LLQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLS 222
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAAC 246
SC ++TD+G+A+L ++LQ L+L GC VT A
Sbjct: 223 SCQQLTDAGVAHLP-----------------------LASTLQH---LDLSGCQQVTDAG 256
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 305
L LSAL SL +L+++ C+L +K LN GF +D L + G+ +L+
Sbjct: 257 LRGLSALRSLQHLDVHSCRLVTGA--TLGDFAVMKSLNAGFCRRFSDAGLAAVAGMHDLQ 314
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L + C V LT C L LT L+++N S T +SD
Sbjct: 315 QLEITHC-------VALTRDALATC---------------LPQLTQLQTLNASGTPLSDA 352
Query: 366 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR--ITDSGAAY----- 417
L+ L SL+ L L R +T+ GLA L + L LDL R + D+ A
Sbjct: 353 PLQALFAQGSLQQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQTA 412
Query: 418 ----------------LRNFKN---LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 457
LR+F++ L++L + G G + DAG+ H++ L +L L+L+
Sbjct: 413 LETLDLSRCSGVTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCG 472
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITS 485
LTD L I+ L L++ N + S
Sbjct: 473 YLTDGALRRIAHFPALEKLHIRNCHLIS 500
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 165/348 (47%), Gaps = 20/348 (5%)
Query: 190 SKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+++TD+G+A+L GL S+ V C + + LE A
Sbjct: 53 TRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALH----TLELAEQRDASGA 108
Query: 249 SLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLES 306
+L+ + L +L L RCQ ++ E + +L+ L + +TD+ L L+ L L
Sbjct: 109 ALAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASLRPLLQLRH 168
Query: 307 LNLDSCGIGDEG-LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGIS 363
L+L+ L + + L+ L+L+ T + + L HL+ L +L+ +NLS ++
Sbjct: 169 LSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSSCQQLT 228
Query: 364 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
D + L S+L+ L+L +Q+TD GL L++L L HLD+ R+ A L +F
Sbjct: 229 DAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVT--GATLGDFA 286
Query: 423 NLRSLE--ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVS 479
++SL C +DAG+ + + L L ++ LT L + LT L +LN S
Sbjct: 287 VMKSLNAGFCRR-FSDAGLAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQTLNAS 345
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRDLPNLVSF 526
+ ++ A L+ L +L+ L L+ C+ +T + +L + P LVS
Sbjct: 346 GTPLSDAPLQALFAQGSLQQLVLQHCRALTEPGLAQLATS--PALVSL 391
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 13/238 (5%)
Query: 279 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 336
S++ L L G +TD L HL GL +LE ++L SC + D GL L L L LEL++
Sbjct: 43 SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102
Query: 337 QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAAL 394
+ S L+ + L + L GI+ +L +A ++L+ L + R+ +TD LA+L
Sbjct: 103 RDASGAA--LAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASL 160
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG----GGLTDAGVKHIKDLSSLTL 450
L L HL L + + L ++ + +L++ + +A + H+ L L
Sbjct: 161 RPLLQLRHLSL--NGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQ 218
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 507
LNLS LTD + + + L L++S ++T AGLR L L++L+ L + SC++
Sbjct: 219 LNLSSCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRL 276
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 14 LVYSRCLTEVSLEAFR-DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTD 71
L + R LTE L AL L L GV + + Q ++L ++DLS S VT
Sbjct: 368 LQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQ-TALETLDLSRCSGVTG 426
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L H + S LQ+L C +I+D GL HL+ L L +L +T ++ A
Sbjct: 427 DDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIAHFP 486
Query: 132 NLVKLDLERCTRI 144
L KL + C I
Sbjct: 487 ALEKLHIRNCHLI 499
>gi|46447550|ref|YP_008915.1| hypothetical protein pc1916 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401191|emb|CAF24640.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 310
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 121/222 (54%), Gaps = 8/222 (3%)
Query: 304 LESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 360
+E LN L+ + + L+ L NLK L L Q + GL HL+ LT L+ ++LS
Sbjct: 78 IEGLNFLNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCW 137
Query: 361 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 418
++D L L L L+ L L+A +TD GL LT LT L HLDL +TD+G A+L
Sbjct: 138 NLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHL 197
Query: 419 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
+ L+ L + C LTDAG+ H+ L+ L L LS NLTD L + LT L LN
Sbjct: 198 KPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLN 257
Query: 478 VSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 517
+ N R +T AGL HL PLK L+ L L C KVT + R ++
Sbjct: 258 LRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKT 299
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 29/245 (11%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T A L +L +L L L CQ L+DDG E + + +L+ L+L G +TD LVHL
Sbjct: 89 LTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCWNLTDAGLVHLT 148
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L L+ L L++C + D+GLV+LT L L+ L+LSD + +GL HL LT L+ + L
Sbjct: 149 PLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHLKPLTALQHLGL 208
Query: 358 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
S ++D L LA L+ L+ L L D +TD GL L LT L HL+L
Sbjct: 209 SCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLNL---------- 258
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
RN +N+ TDAG+ H+ L +L LNL + +T+ L L ++
Sbjct: 259 ---RNCRNV----------TDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKTLAASLN 305
Query: 476 LNVSN 480
L + N
Sbjct: 306 LRIIN 310
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + +T++ L+ LKDC NL++L C ++D GLEHL L+ L L +T G
Sbjct: 84 LNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCWNLTDAG 143
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L+ L L L C + GLV+L L L+ L++ C +TD+ + L LT L
Sbjct: 144 LVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHLKPLTAL 203
Query: 183 KSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
+ L +S C +TD+G+A+L L+ + + M + L V L L L LNL C
Sbjct: 204 QHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGL-VHLKPLTALQHLNLRNCR 262
Query: 242 -VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS---LKVLN 284
VT A L L+ L +L LNL RC ++++ G +F + + L+++N
Sbjct: 263 NVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKTLAASLNLRIIN 310
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 12/221 (5%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL- 203
L+ LK L++L ++ C +TD ++ L+ LT L+ L +S C +TD+G+ +L L
Sbjct: 92 AHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCWNLTDAGLVHLTPLV 151
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLN 262
+ + C + +H LT L L L+L C +T A L L L +L +L L+
Sbjct: 152 GLQHLKLNACYNLTDDGLVH--LTPLTALQHLDLSDCMNLTDAGLAHLKPLTALQHLGLS 209
Query: 263 RCQ-LSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 319
C+ L+D G + + L+ L L +TD+ LVHLK LT L+ LNL +C + D GL
Sbjct: 210 CCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLNLRNCRNVTDAGL 269
Query: 320 VNLTGLCNLKCLELSD----TQVGSSGLRHLSGLTNLESIN 356
+LT L L+ L L T G + + L+ NL IN
Sbjct: 270 AHLTPLKALQQLNLRRCDKVTNTGLARFKTLAASLNLRIIN 310
>gi|87309359|ref|ZP_01091495.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
gi|87287998|gb|EAQ79896.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
Length = 351
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 1/254 (0%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+L L+L ++D+ + + + L+ L++ IT E L L LT LE L I
Sbjct: 75 TLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFRGQPI 134
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
D L L L LK L L DT + GL HL +L+ + L T D L L
Sbjct: 135 RDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFP 194
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
+L L L +T +G+A L + L LD+ ++ D+GAA + L L + +
Sbjct: 195 ALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWKTKV 254
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
TDA + + L++L LNL N +LTD L L++ + L L++ ++ +T AG+ L
Sbjct: 255 TDASLPDLAKLTTLERLNLDAN-DLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKS 313
Query: 495 KNLRSLTLESCKVT 508
K+L +L + KVT
Sbjct: 314 KSLETLIVTRTKVT 327
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 125/274 (45%), Gaps = 10/274 (3%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH-VFLT 227
TD D + L L+ L + +TD + L L+ L S+ +R + L
Sbjct: 63 TDVDFRGLGEAVTLRKLSLQDVGMTDESASELAPLTK------LQSLDMRGVSITGEALQ 116
Query: 228 SLQKLTLLN---LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
SL +LT L G P+ A L L+ L L L L+ S G E LK L
Sbjct: 117 SLGQLTELERLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELY 176
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L DE L L L L L + G+ L + +L+ L++S+T+V +G
Sbjct: 177 LFNTPTVDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAA 236
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++ L L +NL T ++D SL LA L++L+ LNLDA +TD LA L ++ L L
Sbjct: 237 EIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLH 296
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L +TD+G L K+L +L + +TD G
Sbjct: 297 LGSTSVTDAGILELAKSKSLETLIVTRTKVTDDG 330
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 30/179 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L P V+++ + ++ +L + L GSDVT SG+ L +L+ LD +
Sbjct: 172 LKELYLFNTPTVDEEL--AVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSET- 228
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D G + L LT L+ + A L +L
Sbjct: 229 KVDDAGAAEIAKLPKLTDLNLWKTKVTDA-------------------------SLPDLA 263
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIF 210
L LE LN+ N +TD+++ L+ + NLK L + + VTD+GI L K S+ ++I
Sbjct: 264 KLTTLERLNLD-ANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIV 321
>gi|83748568|ref|ZP_00945588.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83724776|gb|EAP71934.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 629
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 135/486 (27%), Positives = 212/486 (43%), Gaps = 36/486 (7%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 143 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 200
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 201 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 258
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L N I D L+ LKSL
Sbjct: 259 LAG-APLVSLNLHN-------------------------NGIGDEGALALATSGTLKSLN 292
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
S + + D+G+ ++ + + + +MI + + LT L+L + A
Sbjct: 293 ASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNT--SLTELDLSTNRLGDAG 350
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L+ SL LN+ ++ DDG E ++ +LK LNL +N I + L G T L
Sbjct: 351 AQVLAGSRSLTSLNVRNNEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSE 410
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L+L +C I G L ++ L L ++G SG R ++ + L ++LS I D
Sbjct: 411 LDLRACAIDPYGASALARNTSVASLHLGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAG 470
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+ LAG SL SLNLD +I D G AAL LT L+L RI +GA +L L
Sbjct: 471 AQVLAGNDSLMSLNLDDNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTE 530
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L++ + G + + + LT LN+S N T L SL+ N+R+ A
Sbjct: 531 LDLSENRIGPEGAEALSLSTVLTTLNVSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEA 590
Query: 487 GLRHLK 492
G + L+
Sbjct: 591 GAKMLE 596
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 179/412 (43%), Gaps = 75/412 (18%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-----YLKGL 203
V KG + LE+L + P G+ +L+ + + S V+++G+A LK L
Sbjct: 149 VRFKGELTLEALKA----------LPP--GVEHLEIGRSTGSGVSNAGLALLATRPLKSL 196
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
S++ + + + RL LTSL +L GC + +L+ S+ L+L+
Sbjct: 197 SLNGIE--IDAEGARLLATCASLTSL------SLTGCSIGDRAATALAQSRSIASLDLSV 248
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
+ DG + L LNL N I DE + L L+SLN + GIGD G++
Sbjct: 249 NMIGPDGARALAGA-PLVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFA 307
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L L L+ +G +G R L T+L ++LS + D + LAG SL SLN+
Sbjct: 308 DNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRN 367
Query: 384 RQITDTGLAAL---TSL---------------------TGLTHLDLFGARITDSGAAYLR 419
+I D G AL T+L T L+ LDL I GA+ L
Sbjct: 368 NEIGDDGTEALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALA 427
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG---------- 469
++ SL + + D+G + I + +LTLL+LS+N N+ D ++++G
Sbjct: 428 RNTSVASLHLGSNRIGDSGARAIATIRTLTLLDLSRN-NIHDAGAQVLAGNDSLMSLNLD 486
Query: 470 --------------LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L SLN++++RI G +HL L L L ++
Sbjct: 487 DNEIGDDGTAALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRI 538
>gi|254411467|ref|ZP_05025244.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181968|gb|EDX76955.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 577
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 230/456 (50%), Gaps = 54/456 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L+ + L G+ + D + L + +NL L+ + QI D + L L+NLT L+ N
Sbjct: 92 TNLIGLSLWGNQIKD--VTPLSELTNLTELNL-YNNQIKD--VTPLSELTNLTELNLY-N 145
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I + + +GLINL +L L + T I L GL L L++ I D+
Sbjct: 146 NQI--KDVTPLSGLINLTRLILFSNQITDITP----LSGLTNLTELSLDNNQII---DVT 196
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
PLSGL NL L + +++T+ L GL+ + +++ + I + LT+L++L L
Sbjct: 197 PLSGLANLTELNLYNNQITE---VSLSGLTNLTELYLSNNQITEVNL--SGLTNLRRLYL 251
Query: 235 LNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T +D LS L +L L+L Q+ D S + +L L+L +N+I D
Sbjct: 252 -------STNQIIDISPLSGLTNLTELDLKYNQIKD--VSPLSGLTNLTELDLKYNQIKD 302
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+ L GLTNL L L S I D + L+GL NL L LSD ++ + LSGL NL
Sbjct: 303 --VSPLSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLSDNKI--KDISPLSGLINL 356
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
++L I D + L+GL +L L+L + +I D ++ L+ LT LT L +IT+
Sbjct: 357 TGLDLGSNKIKD--ISPLSGLINLTGLDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE 412
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
L NL L + +TD V + +L++LT L L+ N +TD + +SGLT
Sbjct: 413 ---VSLSGLTNLTELYLRNNQITD--VSSLSELTNLTRLVLNNN-QITD--VSPLSGLTN 464
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L LN+SN++IT L L NL L L + ++T
Sbjct: 465 LTVLNLSNNQITDVSLSG---LTNLTVLNLSNNQIT 497
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 144/418 (34%), Positives = 215/418 (51%), Gaps = 43/418 (10%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
F QI+D + L GL+NLT LS N I + +GL NL +L+L V
Sbjct: 166 FSNQITD--ITPLSGLTNLTELSLDNNQII---DVTPLSGLANLTELNLYNNQITE---V 217
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
+L GL L L + N IT+ + LSGLTNL+ L +S +++ D I+ L GL+ + +
Sbjct: 218 SLSGLTNLTELYLS-NNQITEVN---LSGLTNLRRLYLSTNQIID--ISPLSGLTNLTEL 271
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
+ + I + L + L LT L+L+ + LS L +L L L+ Q+ D
Sbjct: 272 DLKYNQIKDVSPL----SGLTNLTELDLKYNQIKDVS--PLSGLTNLTGLYLSSNQIKD- 324
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
S + +L +L L N+I D + L GL NL L+L S I D + L+GL NL
Sbjct: 325 -ISPLSGLTNLTLLYLSDNKIKD--ISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLT 379
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L+LS ++ + LSGLTNL +L I++ SL +GL++L L L QITD
Sbjct: 380 GLDLSSNKI--KDISPLSGLTNLTWFSLDNNQITEVSL---SGLTNLTELYLRNNQITD- 433
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
+++L+ LT LT L L +ITD + L NL L + +TD + L++LT
Sbjct: 434 -VSSLSELTNLTRLVLNNNQITD--VSPLSGLTNLTVLNLSNNQITDVSLSG---LTNLT 487
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+LNLS N +TD + +SGLT L LN+ +++IT + L L NL L L + ++
Sbjct: 488 VLNLSNN-QITD--VSPLSGLTNLTGLNLISNQITDVSI--LSGLTNLTVLILSNNQI 540
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 212/431 (49%), Gaps = 73/431 (16%)
Query: 67 SDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+D+T SGL +L + S LD N I ++ L GL+NLT L+ NN IT
Sbjct: 171 TDITPLSGLTNLTELS----LDNNQIIDVT-----PLSGLANLTELNLY-NNQITE---V 217
Query: 126 AFAGLINLVKLDL--ERCTRIH-GGLVNLK----------------GLMKLESLNIKWCN 166
+ +GL NL +L L + T ++ GL NL+ GL L L++K+
Sbjct: 218 SLSGLTNLTELYLSNNQITEVNLSGLTNLRRLYLSTNQIIDISPLSGLTNLTELDLKYNQ 277
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCL 222
D+ PLSGLTNL L + +++ D SG+ L GL +SS S
Sbjct: 278 I---KDVSPLSGLTNLTELDLKYNQIKDVSPLSGLTNLTGLYLSSNQIKDISP------- 327
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
L+ L LTLL L + + LS L +L L+L ++ D S + +L
Sbjct: 328 ---LSGLTNLTLLYLSDNKI--KDISPLSGLINLTGLDLGSNKIKD--ISPLSGLINLTG 380
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+L N+I D + L GLTNL +LD+ I + V+L+GL NL L L + Q+ +
Sbjct: 381 LDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE---VSLSGLTNLTELYLRNNQI--TD 433
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ LS LTNL + L+ I+D S L+GL++L LNL QITD L+ LT+ LT
Sbjct: 434 VSSLSELTNLTRLVLNNNQITDVS--PLSGLTNLTVLNLSNNQITDVSLSGLTN---LTV 488
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L+L +ITD + L NL L + +TD + + L++LT+L LS N K
Sbjct: 489 LNLSNNQITD--VSPLSGLTNLTGLNLISNQITDVSI--LSGLTNLTVLILSNN---QIK 541
Query: 463 TLELISGLTGL 473
+ +SGLT L
Sbjct: 542 DVSPLSGLTNL 552
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 183/374 (48%), Gaps = 60/374 (16%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+D+ PLSGLTNL L + +++ D + L L+ + + + + I + L LT+L
Sbjct: 83 TDISPLSGLTNLIGLSLWGNQIKD--VTPLSELTNLTELNLYNNQIKDVTPLS-ELTNLT 139
Query: 231 KLTLLNLEGCPVTAAC-----------------LDSLSALGSLFYLNLNRCQLSDDGCEK 273
+L L N + VT + LS L +L L+L+ Q+ D
Sbjct: 140 ELNLYNNQIKDVTPLSGLINLTRLILFSNQITDITPLSGLTNLTELSLDNNQIID--VTP 197
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S + +L LNL N+IT+ V L GLTNL L L + I + VNL+GL NL+ L L
Sbjct: 198 LSGLANLTELNLYNNQITE---VSLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYL 251
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
S Q+ + LSGLTNL ++L + I D S L+GL++L L+L QI D ++
Sbjct: 252 STNQI--IDISPLSGLTNLTELDLKYNQIKDVS--PLSGLTNLTELDLKYNQIKD--VSP 305
Query: 394 LTSLTGLTHLDLFGARITD----SGAA-----YLRNFKNLRSLEICGG--GLT--DAGVK 440
L+ LT LT L L +I D SG YL + K ++ + G LT D G
Sbjct: 306 LSGLTNLTGLYLSSNQIKDISPLSGLTNLTLLYLSDNK-IKDISPLSGLINLTGLDLGSN 364
Query: 441 HIKDLS------SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
IKD+S +LT L+LS N K + +SGLT L ++ N++IT L L
Sbjct: 365 KIKDISPLSGLINLTGLDLSSN---KIKDISPLSGLTNLTWFSLDNNQITEVSLSG---L 418
Query: 495 KNLRSLTLESCKVT 508
NL L L + ++T
Sbjct: 419 TNLTELYLRNNQIT 432
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 117/262 (44%), Gaps = 56/262 (21%)
Query: 62 VDLSGSDVTDSGLIHLKDCS------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L+G D+ G +KD S NL LD + +I D + L GL+NLT S
Sbjct: 354 INLTGLDL---GSNKIKDISPLSGLINLTGLDLSSN-KIKD--ISPLSGLTNLTWFSLD- 406
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN IT + +GL NL +L L + + ++ L +L +L N +D+ P
Sbjct: 407 NNQITE---VSLSGLTNLTELYLR-----NNQITDVSSLSELTNLTRLVLNNNQITDVSP 458
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
LSGLTNL L +S +++TD V L+ L LT+L
Sbjct: 459 LSGLTNLTVLNLSNNQITD-----------------------------VSLSGLTNLTVL 489
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
NL +T LS L +L LNL Q++D S + +L VL L N+I D +
Sbjct: 490 NLSNNQITDVS--PLSGLTNLTGLNLISNQITD--VSILSGLTNLTVLILSNNQIKD--V 543
Query: 296 VHLKGLTNLESLNLDSCGIGDE 317
L GLTNL L L I +
Sbjct: 544 SPLSGLTNLRRLYLGDNPIPQQ 565
>gi|156406568|ref|XP_001641117.1| predicted protein [Nematostella vectensis]
gi|156228254|gb|EDO49054.1| predicted protein [Nematostella vectensis]
Length = 803
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 124/445 (27%), Positives = 189/445 (42%), Gaps = 97/445 (21%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL- 130
+G HL+ L L N C +I +S L + A+T + + AF
Sbjct: 416 AGQRHLQPLVTLGVLPHNVCDKI----------ISRLVE-----DKALTPKVLHAFISCC 460
Query: 131 INLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ +KLD C + + L L+ +L L+IK C ITD ++ + L L +LQ+
Sbjct: 461 LRYIKLD---CYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD 517
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+K++D G+ Y G +Q L L+L G VT
Sbjct: 518 NTKISDKGLMYFSG----------------------HANCIQTLVHLSLNGTGVTNQGTA 555
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
SL+ L L L +++ + + LK LN+ F +TDECLV L +L SLN
Sbjct: 556 SLADWKILRILGLENTKIT--SLDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLN 613
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
+ + D GL +L GL L L+LSD + I+D ++
Sbjct: 614 ILQTSVTDRGLQHLKGLP-LSSLDLSD-----------------------YRNITDSGVQ 649
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+AG++SL L L ++TD G+ L+ L L L++ +TD G+ L NF NL+ L
Sbjct: 650 YIAGMTSLTRLLLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQILG 709
Query: 429 ICGGGLTDA--------------------------GVKHIKDLSSLTLLNLSQNCNLTDK 462
+ G+TD G+KH+ +L+SLTLLNL D
Sbjct: 710 LSSTGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHL-ELNSLTLLNLDWTRVTADC 768
Query: 463 TLELISGLTGLVSLNVSNSRITSAG 487
L L++G L +L +SN S G
Sbjct: 769 GL-LLTGCPALKALRMSNCTPPSPG 792
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 138/273 (50%), Gaps = 34/273 (12%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
VT L L L +L++ C + +D E + +L L L +I+D+ L++ G
Sbjct: 472 VTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLDNTKISDKGLMYFSG 531
Query: 301 LTN----LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESI 355
N L L+L+ G+ ++G +L L+ L L +T++ S +RHL +L+++
Sbjct: 532 HANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKITSLDVIRHLQ---HLKTL 588
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
N++FTG++D L L SL SLN+ +TD GL L L L+ LDL
Sbjct: 589 NVAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGLP-LSSLDL---------- 637
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+++N+ TD+GV++I ++SLT L LS N LTD+ + +SGL LV
Sbjct: 638 ---SDYRNI----------TDSGVQYIAGMTSLTRLLLS-NTRLTDEGMVQLSGLAKLVE 683
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
LNV + +T G R L NL+ L L S VT
Sbjct: 684 LNVDRTVVTDKGSRVLSNFANLQILGLSSTGVT 716
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 180/388 (46%), Gaps = 40/388 (10%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGV-NDKWMDVIASQGSSL 59
+LP ++ +I + LV + LT L AF C L+ + L Y V ND ++ +
Sbjct: 429 VLPHNVCDKIISRLVEDKALTPKVLHAFISCCLRYIKLDCYLLVTNDLLAELRFHRQLVH 488
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN----LTSLSFRR 115
LS+ S +TD L + D L +L + +ISD GL + G +N L LS
Sbjct: 489 LSIK-SCPIITDKALEAVVDLPALTTLQLDNT-KISDKGLMYFSGHANCIQTLVHLSL-N 545
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T QG + A L L LE T+I L ++ L L++LN+ + +TD +
Sbjct: 546 GTGVTNQGTASLADWKILRILGLEN-TKI-TSLDVIRHLQHLKTLNVAFTG-VTDECLVA 602
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQKLTL 234
L+ +L SL I + VTD G+ +LKGL +SS+ I ++ +TSL +L L
Sbjct: 603 LNSHPSLSSLNILQTSVTDRGLQHLKGLPLSSLDLSDYRNITDSGVQYIAGMTSLTRLLL 662
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
N +T + LS L L LN++R ++D G S +L++L L +TD+
Sbjct: 663 SNTR---LTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQILGLSSTGVTDKL 719
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC-LELSDTQVGSSGLRHLSGLTNLE 353
L +G++N C C L LS T V + G++HL L +L
Sbjct: 720 L--------------------RDGVLN---RCKKLCKLNLSRTSVTNRGIKHLE-LNSLT 755
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNL 381
+NL +T ++ L G +LK+L +
Sbjct: 756 LLNLDWTRVTADCGLLLTGCPALKALRM 783
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 107/235 (45%), Gaps = 21/235 (8%)
Query: 49 MDVIAS-QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
+DVI Q L+V +G VTD L+ L +L SL+ ++D GL+HL+GL
Sbjct: 576 LDVIRHLQHLKTLNVAFTG--VTDECLVALNSHPSLSSLNI-LQTSVTDRGLQHLKGLP- 631
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
L+SL IT G++ AG+ +L +L L G+V L GL KL LN+
Sbjct: 632 LSSLDLSDYRNITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGLAKLVELNVDRT-V 690
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+TD + LS NL+ L +S + VTD + + C + +L +T
Sbjct: 691 VTDKGSRVLSNFANLQILGLSSTGVTDK--------LLRDGVLNRCKKLCKLNLSRTSVT 742
Query: 228 -------SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
L LTLLNL+ VTA C L+ +L L ++ C G E S
Sbjct: 743 NRGIKHLELNSLTLLNLDWTRVTADCGLLLTGCPALKALRMSNCTPPSPGDESGS 797
>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 126/454 (27%), Positives = 214/454 (47%), Gaps = 46/454 (10%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLKDCS 81
LE FR ++Q++ L V+ +W+ + S L V L +D V S + L S
Sbjct: 90 LEVFRH-SVQEIDLSGDIAVDAEWLAYLGS--FRYLGV-LKLADCKKVDHSAIWPLSGMS 145
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ LD + C +I+D G++H+ + +L L +T G+ + L L+ LDL
Sbjct: 146 MLKELDLSRCSKITDAGIKHIVSIDSLEKLHLS-ETGLTDNGVMLISALKGLILLDLGGI 204
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYL 200
L +L+ L +LE L++ W + ITD L T L+ L +S + VT + +
Sbjct: 205 HMTDKALRSLQVLTQLEHLDV-WGSEITDEGASILEAFTGLRFLNVSWTHVTRLPHLPNM 263
Query: 201 KGLSISS-VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL------ 253
K L++S+ I+ +C + H+ LQK T +AA + +
Sbjct: 264 KYLNMSNCTIYSICGGDSEV---HI---PLQKFT--------ASAASFGDIDEVFSSIVA 309
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSC 312
S +L+++ C LS+ K+ SL+ L++ N +TD+ + ++ + L L+L +
Sbjct: 310 SSFSFLDMSGCSLSN--LYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSLKNT 367
Query: 313 GIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------- 364
GI + L L G + NL L L+ T++ S L ++S + +L I+LS T I
Sbjct: 368 GITSQALCILAGTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDLSHTTIKGFTRVEAN 427
Query: 365 ----GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
SL L L L+SLNL+ ++D + +TS L +L L ++D G L +
Sbjct: 428 SEKIPSLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDFLSDPGLHALSS 487
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
NL L CG L+++G+ + L +L+LS
Sbjct: 488 ASNLIHLGFCGSVLSNSGLLEFVPPAQLHVLDLS 521
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 8/169 (4%)
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 350
E L +L L L L C D + L+G+ LK L+LS +++ +G++H+ +
Sbjct: 111 EWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSMLKELDLSRCSKITDAGIKHIVSID 170
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
+LE ++LS TG++D + ++ L L L+L +TD L +L LT L HLD++G+ I
Sbjct: 171 SLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHMTDKALRSLQVLTQLEHLDVWGSEI 230
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
TD GA+ L F LR L + +T + L ++ LN+S NC +
Sbjct: 231 TDEGASILEAFTGLRFLNVSWTHVT-----RLPHLPNMKYLNMS-NCTI 273
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 59/353 (16%)
Query: 222 LHVFLTSLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGS 279
L VF S+Q++ +L G V A L L + L L L C+ D S +
Sbjct: 90 LEVFRHSVQEI---DLSGDIAVDAEWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSM 146
Query: 280 LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
LK L+L ++ITD + H+ + +LE L+L G+ D G++ ++ L L L+L +
Sbjct: 147 LKELDLSRCSKITDAGIKHIVSIDSLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHM 206
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
LR L LT LE +++ + I+D L + L+ LN+ +T L L ++
Sbjct: 207 TDKALRSLQVLTQLEHLDVWGSEITDEGASILEAFTGLRFLNVSWTHVTR--LPHLPNMK 264
Query: 399 GL----------------THLDLFGARITDSGAAY------------------------- 417
L H+ L + T S A++
Sbjct: 265 YLNMSNCTIYSICGGDSEVHIPL--QKFTASAASFGDIDEVFSSIVASSFSFLDMSGCSL 322
Query: 418 -----LRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISG-L 470
L+ K+L L+I +TD V+++ ++ L L+L +N +T + L +++G +
Sbjct: 323 SNLYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSL-KNTGITSQALCILAGTV 381
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L SL+++ ++I + L ++ + +LR + L + S +P+L
Sbjct: 382 PNLASLSLAYTKIDDSALVYISMMPSLRVIDLSHTTIKGFTRVEANSEKIPSL 434
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
MKL L++K IT + L+G + NL SL ++ +K+ DS + Y+ + VI +
Sbjct: 357 MKLRYLSLK-NTGITSQALCILAGTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDLSH 415
Query: 214 SMIIRLFCLHV---------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
+ I + L L L LNLE P++ + +++ +L YL L
Sbjct: 416 TTIKGFTRVEANSEKIPSLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSD 475
Query: 265 QLSDDGCEKFSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGI 314
LSD G S +L ++LGF + +++ L+ L L+L C I
Sbjct: 476 FLSDPGLHALSSASNL--IHLGFCGSVLSNSGLLEFVPPAQLHVLDLSGCWI 525
>gi|290972120|ref|XP_002668808.1| predicted protein [Naegleria gruberi]
gi|284082332|gb|EFC36064.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 141/278 (50%), Gaps = 1/278 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ ++ LT L++ + +S + L LN+ Q+ +G + S++ L L+
Sbjct: 45 YISEMKSLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLD 104
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ NEI E ++ + L SLN+ I EG ++G+ +L L + Q+G G +
Sbjct: 105 IHSNEIGVEGSKYISEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSK 164
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++S + L S+N+ I + + ++G+ SL SLN+ QI G ++ + LT L+
Sbjct: 165 YISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLN 224
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ I+ G+ Y+ K+L SL I + G K+I ++ LT LN+ N + +
Sbjct: 225 IGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYN-EIGVEGA 283
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ ISG+ L SLN+ ++I G +++ +K L SL +
Sbjct: 284 KYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNI 321
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 152/307 (49%), Gaps = 11/307 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SL+I + N I K +S + +L SL I +++ G Y+ S + L
Sbjct: 25 MKQLTSLDI-YSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEGSKYI------SEMKQLT 77
Query: 214 SMIIRLFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
S+ I + V +++ + +LT L++ + +S + L LN+ Q+S +
Sbjct: 78 SLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYNQISVE 137
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + S + SL L +G+N+I E ++ + L SLN+ IG+EG ++G+ +L
Sbjct: 138 GAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLT 197
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L + Q+G G +++S + L S+N+ IS + ++G+ SL SLN+ QI
Sbjct: 198 SLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVE 257
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G ++ + LT L++ I GA Y+ K+L SL I + G K+I ++ LT
Sbjct: 258 GSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLT 317
Query: 450 LLNLSQN 456
LN+ N
Sbjct: 318 SLNIGHN 324
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 140/274 (51%), Gaps = 1/274 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+ +LT L++ + +S + L L++ ++ +G + S++ SL L++ N
Sbjct: 1 MNQLTSLDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
EI E ++ + L SLN+ IG EG ++ + L L++ ++G G +++S
Sbjct: 61 EIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISE 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ L S+N+ + IS + ++G+ SL SL + QI G ++ + LT L++
Sbjct: 121 MKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN 180
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
I + GA Y+ K+L SL I + G K+I ++ LT LN+ N ++ + + IS
Sbjct: 181 EIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHN-EISVEGSKYIS 239
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
G+ L SLN+ ++I G +++ +K L SL +
Sbjct: 240 GMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNI 273
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 163/334 (48%), Gaps = 13/334 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ +++ G ++ + L SLD + +I G +++ + +LTSL +N
Sbjct: 4 LTSLDMHSNEIGVEGSKYISEMKQLTSLDI-YSNEIGVEGAKYISEMKSLTSLDIH-SNE 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G K + + L L++ G + + +L SL+I N I K +S
Sbjct: 62 IGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDI-HSNEIGVEGSKYISE 120
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV----FLTSLQKLTL 234
+ L SL I ++++ G Y+ G+ L S+ I + V +++ +++LT
Sbjct: 121 MKQLTSLNIGYNQISVEGAKYISGMKS------LTSLYIGYNQIGVEGSKYISEMKQLTS 174
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LN+ + +S + SL LN+ Q+ +G + S++ L LN+G NEI+ E
Sbjct: 175 LNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEG 234
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++ G+ +L SLN+ IG EG ++ + L L + ++G G +++SG+ +L S
Sbjct: 235 SKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTS 294
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
+N+ + I + ++ + L SLN+ +I +
Sbjct: 295 LNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGE 328
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 124/236 (52%), Gaps = 1/236 (0%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L L++ NEI E ++ + L SL++ S IG EG ++ + +L L++ ++G
Sbjct: 4 LTSLDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSNEIG 63
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G +++S + L S+N+ + I + ++ ++ L SL++ + +I G ++ +
Sbjct: 64 VEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQ 123
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
LT L++ +I+ GA Y+ K+L SL I + G K+I ++ LT LN+ N +
Sbjct: 124 LTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN-EI 182
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
++ + ISG+ L SLN+ ++I G +++ +K L SL + +++ K +
Sbjct: 183 GEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 119/264 (45%), Gaps = 29/264 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L S+D+ +++ G ++ + L SL+ + QIS G +++ G+ +LTSL +
Sbjct: 95 SEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QISVEGAKYISGMKSLTSL-Y 152
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G + G+ L SLNI + N I
Sbjct: 153 IGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGY-NQIGVEGS 211
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S + L SL I ++++ G Y+ G+ + LT
Sbjct: 212 KYISEMKQLTSLNIGHNEISVEGSKYISGM--------------------------KSLT 245
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LN+ + +S + L LN+ ++ +G + S + SL LN+G+N+I E
Sbjct: 246 SLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVE 305
Query: 294 CLVHLKGLTNLESLNLDSCGIGDE 317
++ + L SLN+ IG+E
Sbjct: 306 GSKYISEMKQLTSLNIGHNEIGEE 329
>gi|46445970|ref|YP_007335.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399611|emb|CAF23060.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 602
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 155/302 (51%), Gaps = 33/302 (10%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L +TD+ L+ LK+C NL+ L C ++D GL HL L L L N +T G
Sbjct: 291 LENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAG 350
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L+ L L+L C + GL +L L+ L+ L++ C+ +TD+ + L+ L L
Sbjct: 351 LAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMAL 410
Query: 183 KSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
+ L +S C K+TD+G+A+ LT L L L+L GC
Sbjct: 411 QHLGLSACDKLTDAGLAH--------------------------LTPLVALQYLSLNGCD 444
Query: 241 PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL 298
+T L L+ L +L +LNL+ C +L+D G + + +L+ LNL + ++TD L HL
Sbjct: 445 KLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHL 504
Query: 299 KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 356
L L+ L+L+ C + D GL +LT L NL+ L LS ++ GL HL+ L L+ +N
Sbjct: 505 TPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLN 564
Query: 357 LS 358
LS
Sbjct: 565 LS 566
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 145/480 (30%), Positives = 236/480 (49%), Gaps = 59/480 (12%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
P ++Q+ F L+ CL + + + + + L Y + + V+ + G LL +
Sbjct: 165 PLTLTQKEFIHLL--NCLMDANFKVSEEDIPSFIQLADYYQLTE----VVKNLGEQLLDI 218
Query: 63 DLSGS----DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
S + ++ L+ LK+ NF Q L++ L+ ++SL + +
Sbjct: 219 YKSKKFELFNSSEDSLVELKEV-------LNFARQYQLNTLKNYLELTVVSSL-LNQTSQ 270
Query: 119 ITA--QGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T + +K F+ I +LD LE L+ LK L+ L ++ C+ +TD+ +
Sbjct: 271 LTEFEKILKHFSNEIE--RLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAH 328
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ L L+ L +S C+ +TD+G+A+L T L L
Sbjct: 329 LAPLLALQHLDLSECNNLTDAGLAHL--------------------------TPLMALQH 362
Query: 235 LNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF-NEIT 291
LNL C +T A L L+ L +L YL+L+ C L+D G + + +L+ L L +++T
Sbjct: 363 LNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMALQHLGLSACDKLT 422
Query: 292 DECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 349
D L HL L L+ L+L+ C + D GL +LT L L L LS ++ +GL HL+ L
Sbjct: 423 DAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPL 482
Query: 350 TNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-F 406
L+ +NL + ++D L L L +L+ L+L+ ++TD GLA LTSL L HL+L +
Sbjct: 483 VALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSY 542
Query: 407 GARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
++TD G A+L L+ L + C LTDAG+ H+ L +L L+LS LTD LE
Sbjct: 543 CRKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAVLE 602
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 8/230 (3%)
Query: 258 YLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GI 314
+L+L+ C L+D G + + +L+ LNL + +TD L HL L L+ L+L C +
Sbjct: 337 HLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNL 396
Query: 315 GDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAG 372
D GL +LT L L+ L LS ++ +GL HL+ L L+ ++L+ ++D L L
Sbjct: 397 TDAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTP 456
Query: 373 LSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEIC 430
L +L LNL ++TD GLA LT L L HL+L R +TD+G A+L L+ L++
Sbjct: 457 LVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLN 516
Query: 431 G-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
LTDAG+ H+ L +L LNLS LTD L ++ L L LN+S
Sbjct: 517 RCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLS 566
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 113/224 (50%), Gaps = 28/224 (12%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 345
N +TD L HL L L+ LNL C + D GL +LT L L+ L+LS + +GL H
Sbjct: 344 NNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAH 403
Query: 346 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 403
L+ L L+ + LS ++D L L L +L+ L+L+ ++TD GLA LT L LTHL
Sbjct: 404 LTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHL 463
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+L C LTDAG+ H+ L +L LNL LTD
Sbjct: 464 NL----------------------SWCDK-LTDAGLAHLTPLVALQHLNLRWCRKLTDAG 500
Query: 464 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
L ++ L L L+++ ++T AGL HL L NLR L L C+
Sbjct: 501 LAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCR 544
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 410 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+TD+ L+N KNL+ L + LTDAG+ H+ L +L L+LS+ NLTD L ++
Sbjct: 296 LTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLT 355
Query: 469 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 505
L L LN+S + +T AGL HL PL L+ L L C
Sbjct: 356 PLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGC 393
>gi|290997674|ref|XP_002681406.1| predicted protein [Naegleria gruberi]
gi|284095030|gb|EFC48662.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 114/424 (26%), Positives = 203/424 (47%), Gaps = 19/424 (4%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+ Q V K++ S+ L S+D+ + + G + L SLD QI
Sbjct: 8 DIGENQIGAVGAKFI----SEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN-QI 62
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLK 152
D G + + + LTSLS NN I A G + + + L LD+ C G G+ ++
Sbjct: 63 GDEGAKFISEMKQLTSLSIY-NNLIGAVGFEFISEMKQLTSLDI--CYNEIGDEGVKSIC 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG---IAYLKGLSISSVI 209
+ +L SL+I + N I D +K +S + L SL I+ +++ G I +K L+ S+
Sbjct: 120 EMKQLTSLSI-YNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIY 178
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
+ F++ +++LT L++ + +S + L LN+ ++ +
Sbjct: 179 NNQTGAV-----GAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAE 233
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + S++ L L++G NEI DE + + L SLN+ IGDEG +++ + L
Sbjct: 234 GVKLISEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLT 293
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L + ++G G + +S + L S+N+S I D + ++ + L SL++ +I D
Sbjct: 294 SLGAYNNEIGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISEMKQLASLDIYYNEIGDE 353
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G+ ++ + L L++ +I D GA + K L SL+I + D GVK I ++ LT
Sbjct: 354 GVKLISEMKQLKSLNISKNQIGDEGAKLISEMKQLTSLDIHFNEIGDEGVKLISEMKQLT 413
Query: 450 LLNL 453
L++
Sbjct: 414 SLSI 417
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 144/278 (51%), Gaps = 1/278 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT L++ + A + +S + L L++ ++ D+G + ++ L L+
Sbjct: 69 FISEMKQLTSLSIYNNLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSICEMKQLTSLS 128
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I DE + + + L SL++++ IG +G ++ + L L + + Q G+ G +
Sbjct: 129 IYNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYNNQTGAVGAK 188
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + L S+++S I + ++ + L SLN+ +I G+ ++ + LT LD
Sbjct: 189 FISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLISEMKQLTSLD 248
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ G I D GA ++ K L SL IC + D G K I ++ LT L + N + +
Sbjct: 249 IGGNEIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLTSLG-AYNNEIGVEGT 307
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+LIS + L SLN+S ++I G + + +K L SL +
Sbjct: 308 KLISEMKQLTSLNISKNQIGDEGAKLISEMKQLASLDI 345
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 25/296 (8%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++L L++ + A +S + L L++ ++ G + SK+ L L++G N
Sbjct: 1 MKQLKSLDIGENQIGAVGAKFISEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN 60
Query: 289 EITDE---CLVHLKGLTNLESLN-------------------LDSC--GIGDEGLVNLTG 324
+I DE + +K LT+L N LD C IGDEG+ ++
Sbjct: 61 QIGDEGAKFISEMKQLTSLSIYNNLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSICE 120
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ L L + + ++G G++ +S + L S++++ I + + + L SL++
Sbjct: 121 MKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYNN 180
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
Q G ++ + LT LD+ I GA ++ K L SL IC + GVK I +
Sbjct: 181 QTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLISE 240
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ LT L++ N + D+ + IS + L SLN+ ++I G + + +K L SL
Sbjct: 241 MKQLTSLDIGGN-EIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLTSL 295
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 145/328 (44%), Gaps = 29/328 (8%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+C Y + D+ + I L S+ + + + D G+ + + L SLD N +I
Sbjct: 104 DIC---YNEIGDEGVKSICEM-KQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNN-RI 158
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
G + + + LTSLS NN A G K + + L LD+ G + +
Sbjct: 159 GVQGAKSICEMKQLTSLSIY-NNQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEM 217
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI--- 211
+L SLNI + N I +K +S + L SL I +++ D G ++ + + + I
Sbjct: 218 KQLTSLNICY-NRIGAEGVKLISEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSLNICEN 276
Query: 212 --------LCSMIIRLFCLHVF-----------LTSLQKLTLLNLEGCPVTAACLDSLSA 252
S + +L L + ++ +++LT LN+ + +S
Sbjct: 277 QIGDEGAKSISEMKQLTSLGAYNNEIGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISE 336
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
+ L L++ ++ D+G + S++ LK LN+ N+I DE + + L SL++
Sbjct: 337 MKQLASLDIYYNEIGDEGVKLISEMKQLKSLNISKNQIGDEGAKLISEMKQLTSLDIHFN 396
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGS 340
IGDEG+ ++ + L L + + ++ S
Sbjct: 397 EIGDEGVKLISEMKQLTSLSIYNQKMKS 424
>gi|168701212|ref|ZP_02733489.1| hypothetical protein GobsU_16936 [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 35/268 (13%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-- 340
L+L +++TD+ L L G NL L L+ I D GL +L L L L L T G+
Sbjct: 107 LSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATS 166
Query: 341 ---------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
+GL L + L ++L ++D R LA + L+ L L+ +ITD L
Sbjct: 167 AGSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTKITDAAL 226
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
L LT LT +DL ++TD+G +L FK L + + +TDAGV+ + L LT L
Sbjct: 227 ENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELTDL 286
Query: 452 NLS------------------------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
+LS + + D+ + ++ GL LN+ +R+ G
Sbjct: 287 DLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYTRVGDDG 346
Query: 488 LRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ L NL LTL + +VT + ++ L
Sbjct: 347 VSALAAAPNLTGLTLVATRVTDDGVRSL 374
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 13/286 (4%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----------GFNEI 290
VT L L+ +L L LN ++D G + + + L L+L + I
Sbjct: 114 VTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRGI 173
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
TD L L+ + L L+L + D G L + L+ L L T++ + L +L+ LT
Sbjct: 174 TDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTKITDAALENLAPLT 233
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L I+L+FT ++D L+ LA L + L + +TD G+ L +L LT LDL +
Sbjct: 234 ELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELTDLDLSYTKA 293
Query: 411 TDSGAAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
D G L N L S+ + + D G K + LT LNL + D + ++
Sbjct: 294 GDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYT-RVGDDGVSALAA 352
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L L + +R+T G+R L + L + L +VT I+ L
Sbjct: 353 APNLTGLTLVATRVTDDGVRSLFACRKLAYVELRETEVTDGAIREL 398
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 134/318 (42%), Gaps = 39/318 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN------ 117
L+ DVTD L L NL L N I+D GL+HL L L++LS +
Sbjct: 109 LAHHDVTDQKLAELAGQPNLVVLRLNGA-SITDAGLKHLAALDGLSALSLHGTSRGATSA 167
Query: 118 ----AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
IT G+ + L L L G L + +L L ++ ITD+ +
Sbjct: 168 GSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTK-ITDAAL 226
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ L+ LT L + ++ +KVTD+G+ + L +KLT
Sbjct: 227 ENLAPLTELTEIDLTFTKVTDAGLKH--------------------------LARFKKLT 260
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITD 292
+ L VT A + L+AL L L+L+ + D G + + L ++L + D
Sbjct: 261 RVRLSSTAVTDAGVRELAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGD 320
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E L L LNL +GD+G+ L NL L L T+V G+R L L
Sbjct: 321 EGAKALAAAPGLTRLNLGYTRVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKL 380
Query: 353 ESINLSFTGISDGSLRKL 370
+ L T ++DG++R+L
Sbjct: 381 AYVELRETEVTDGAIREL 398
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 40/314 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---------- 93
V D+ + +A Q +L+ + L+G+ +TD+GL HL L +L + +
Sbjct: 114 VTDQKLAELAGQ-PNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRG 172
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I+D GL LR + LT LS +T G + A + L L LE L NL
Sbjct: 173 ITDAGLNELRAIKGLTDLSL-GGIEVTDAGARTLATMPQLRVLGLEGTKITDAALENLAP 231
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L +L +++ + +TD+ +K L+ L +++S + VTD+G+
Sbjct: 232 LTELTEIDLTFTK-VTDAGLKHLARFKKLTRVRLSSTAVTDAGVRE-------------- 276
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCE 272
L +L +LT L+L + +L+A + L ++L + ++ D+G +
Sbjct: 277 ------------LAALPELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAK 324
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+ L LNLG+ + D+ + L NL L L + + D+G+ +L L +E
Sbjct: 325 ALAAAPGLTRLNLGYTRVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVE 384
Query: 333 LSDTQVGSSGLRHL 346
L +T+V +R L
Sbjct: 385 LRETEVTDGAIREL 398
>gi|320165725|gb|EFW42624.1| hypothetical protein CAOG_07756 [Capsaspora owczarzaki ATCC 30864]
Length = 880
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 206/487 (42%), Gaps = 49/487 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+ W+ I S + L+ LI L+ LD N QI+
Sbjct: 234 LNNNWLSAIPSSAFTGLT-----------ALIQLR-------LDTN---QITTVPANAFS 272
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLN 161
GL+ L L + NN IT AF+G LV+L L + T I L GL L L
Sbjct: 273 GLTALIYL-YLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSA--LTGLSALTQLY 329
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------SGIAYLKGLSISSVIFILCSM 215
+ + N IT SGLT L L++S + +T +G+ L L +S + L S+
Sbjct: 330 L-YNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLS--LNQLTSI 386
Query: 216 IIRLFCLHVFLTSLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
F LT+L +L L N L P +A + L +L YL LN Q++
Sbjct: 387 PAGAFS---GLTALTQLLLFNNWLSAVPSSA-----FTGLTALIYLYLNNNQITTVAANA 438
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
F+ + +L L L N+IT GL+ L L L S I + TGL +L LEL
Sbjct: 439 FTGLTALVQLQLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNAFTGLTHLSLLEL 498
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
S+ Q+ S +GLT + ++L +S GL++L++L L QIT A
Sbjct: 499 SNNQITSLPANAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYLYNNQITTVAANA 558
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
T LT L L L+ +IT A+ L L + +T L+ LT L++
Sbjct: 559 FTGLTALVQLHLYRNQITTIPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDI 618
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSN---SRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
S N +T +GLT + L++ N S + S+ L L+ L + V AN
Sbjct: 619 SNN-QITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAAN 677
Query: 511 DIKRLQS 517
L +
Sbjct: 678 AFTSLTA 684
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 124/446 (27%), Positives = 187/446 (41%), Gaps = 41/446 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
QI+ GL+ L L N IT AFAGL LV+L L RI VN
Sbjct: 430 QITTVAANAFTGLTALVQLQLYGNQ-ITTIPASAFAGLSALVQLYL-YSNRITAIFVNAF 487
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYLKGLSISSV 208
GL L L + N IT +GLT + L + S S V S GL+
Sbjct: 488 TGLTHLSLLELS-NNQITSLPANAFAGLTAMTQLSLYNNSLSAVPSSA---FTGLTALQA 543
Query: 209 IFILCSMIIRLFCLHVF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
+++ + I + + F LT+L +L L + + A+ LSAL L YLN NR +
Sbjct: 544 LYLYNNQITTV-AANAFTGLTALVQLHLYRNQITTIPASAFAGLSALVQL-YLNSNR--I 599
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
+ F + L L++ N+IT GLT + L+L + TGL
Sbjct: 600 TTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLT 659
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGISDGSLRKL----- 370
L+ L L + Q+ S + LT L + L +F+G+S +L +L
Sbjct: 660 ALQALFLFNNQISSVAANAFTSLTALIQLQLYGNLITTIPAGAFSGLSKLNLLQLYNNWL 719
Query: 371 --------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
GL++L L LD QIT A + LT L +L L+G +IT A+
Sbjct: 720 SAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLT 779
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
L++L + +T L++L L+LS + +T + S L L LN+ N+
Sbjct: 780 ALQALYLNDNTITTIAANAFAGLTALNWLDLS-DSQITSIPANVFSSLPALAQLNLYNNW 838
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVT 508
+++ L L LT+ ++T
Sbjct: 839 LSAVPTSAFTGLTALTQLTMYGNRIT 864
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 176/411 (42%), Gaps = 16/411 (3%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESL- 160
G+ T+ + ++N IT+ AF GL L ++LD + T + GL L +L
Sbjct: 56 GIPATTTTLYLQSNQITSISSSAFTGLTALTYMRLDTNQITTVPANA--FSGLSTLNTLQ 113
Query: 161 -NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
N W + I S +GLT L L ++ +++T + GL+ ++++ + I +
Sbjct: 114 LNNNWLSAIPSSAF---TGLTALIQLLLNNNQITTVPSSAFTGLTALQILYLHNNQIATV 170
Query: 220 FCLHVF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
++ F LT+LQ L L N + + ++ S L +L L L+ Q++ FS +
Sbjct: 171 -AINAFSGLTALQTLYLYNNQ---IITVATNAFSGLAALQVLRLDTNQITTVPANAFSGL 226
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
L L L N ++ GLT L L LD+ I +GL L L L + Q
Sbjct: 227 SKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLDTNQITTVPANAFSGLTALIYLYLYNNQ 286
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
+ + SG T L + L I+ L GLS+L L L QIT + L
Sbjct: 287 ITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGL 346
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
T LT L L IT A L L++ LT L++LT L L N
Sbjct: 347 TALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLFNNW 406
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L+ +GLT L+ L ++N++IT+ L L L L ++T
Sbjct: 407 -LSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQLYGNQIT 456
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 137/325 (42%), Gaps = 8/325 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ GL+ L L RN IT AFAGL LV+L L R T I
Sbjct: 550 QITTVAANAFTGLTALVQLHLYRNQ-ITTIPASAFAGLSALVQLYLNSNRITTIFANA-- 606
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
L KL L+I N IT +GLT + L + + + + GL+ +F
Sbjct: 607 FPSLTKLTYLDIS-NNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALF 665
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+ + I + + F TSL L L L G +T + S L L L L LS
Sbjct: 666 LFNNQISSV-AANAF-TSLTALIQLQLYGNLITTIPAGAFSGLSKLNLLQLYNNWLSAIP 723
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
F+ + +L L L N+IT GLT L L+L I GL L+
Sbjct: 724 SSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQA 783
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L+D + + +GLT L ++LS + I+ + L +L LNL ++
Sbjct: 784 LYLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVP 843
Query: 391 LAALTSLTGLTHLDLFGARITDSGA 415
+A T LT LT L ++G RIT A
Sbjct: 844 TSAFTGLTALTQLTMYGNRITTISA 868
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 148/353 (41%), Gaps = 16/353 (4%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER---CTRIHGGLVNLKGLMKLE 158
GL+ L +L + NN IT AF GL LV+L L R T L L++L
Sbjct: 535 FTGLTALQAL-YLYNNQITTVAANAFTGLTALVQLHLYRNQITTIPASAFAGLSALVQLY 593
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
LN N IT LT L L IS +++T GL+ + + + ++
Sbjct: 594 -LN---SNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGLTAMTQLHLYNNLFST 649
Query: 219 LFCLHVF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSL-FYLNLNRCQLSDDGCEKFS 275
+ F LT+LQ L L N + V A SL+AL L Y NL ++ FS
Sbjct: 650 VPS-SAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNL----ITTIPAGAFS 704
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ L +L L N ++ GLT L L LD+ I +GL L L L
Sbjct: 705 GLSKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYG 764
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
Q+ + +GLT L+++ L+ I+ + AGL++L L+L QIT +
Sbjct: 765 NQITTISASAFAGLTALQALYLNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFS 824
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
SL L L+L+ ++ + L L + G +T L++L
Sbjct: 825 SLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNAL 877
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 151/348 (43%), Gaps = 17/348 (4%)
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
T I G+ + L+S N IT +GLT L +++ +++T
Sbjct: 51 TAIPTGIPATTTTLYLQS------NQITSISSSAFTGLTALTYMRLDTNQITTVPANAFS 104
Query: 202 GLSISSVIFI----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
GLS + + + L ++ F LT+L +L L N + V ++ L+AL L+
Sbjct: 105 GLSTLNTLQLNNNWLSAIPSSAFT---GLTALIQLLLNNNQITTVPSSAFTGLTALQILY 161
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L+ Q++ FS + +L+ L L N+I GL L+ L LD+ I
Sbjct: 162 ---LHNNQIATVAINAFSGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQITTV 218
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
+GL L L+L++ + + +GLT L + L I+ +GL++L
Sbjct: 219 PANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLDTNQITTVPANAFSGLTALI 278
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L L QIT A + T L L L+G +IT ++ L L L + +T
Sbjct: 279 YLYLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLYLYNNQITSV 338
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L++LT L LS N +T +GLT L L++S +++TS
Sbjct: 339 PANGFSGLTALTDLRLSNNT-ITSILANAFTGLTKLTYLDLSLNQLTS 385
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 1/277 (0%)
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T L L+ +T+ + + L +L Y+ L+ Q++ FS + +L L L N ++
Sbjct: 62 TTLYLQSNQITSISSSAFTGLTALTYMRLDTNQITTVPANAFSGLSTLNTLQLNNNWLSA 121
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
GLT L L L++ I TGL L+ L L + Q+ + + SGLT L
Sbjct: 122 IPSSAFTGLTALIQLLLNNNQITTVPSSAFTGLTALQILYLHNNQIATVAINAFSGLTAL 181
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+++ L I + +GL++L+ L LD QIT A + L+ L L L ++
Sbjct: 182 QTLYLYNNQIITVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSKLNTLQLNNNWLSA 241
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
++ L L + +T L++L L L N +T SG T
Sbjct: 242 IPSSAFTGLTALIQLRLDTNQITTVPANAFSGLTALIYLYLYNN-QITTVATNAFSGPTA 300
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
LV L + ++IT+ L L L L L + ++T+
Sbjct: 301 LVQLQLYGNQITTIPSSALTGLSALTQLYLYNNQITS 337
>gi|168700559|ref|ZP_02732836.1| hypothetical protein GobsU_13597 [Gemmata obscuriglobus UQM 2246]
Length = 446
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 171/391 (43%), Gaps = 35/391 (8%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G A G + + +ER + L LKGL + + + +TD+D+ ++G
Sbjct: 70 VTVHGPGADGGCV----VRVERTADLAPALATLKGLKCVTEVTFA-SDRLTDTDLACIAG 124
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
+L+S + C +VT +G L L +L ++L
Sbjct: 125 FEHLRSFGLRDCGRVTGAGFG--------------------------VLAQLPRLKWVSL 158
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
G PVT L + +L + L R + +D G ++ + + +L +N+ +T
Sbjct: 159 VG-PVTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTATPVTGTAFAE 217
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
G + L ++ GL ++ L L L L T V SGL+HL+ L+ ++L
Sbjct: 218 -PGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLARARALQELSL 276
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
+ T ++D + LAG+ +L+ LNL+ +T A L L+L R TD+ ++
Sbjct: 277 ADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETRFTDASGSH 336
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L L +L + G +TDAG+ + DL L L+L+ D E+ L L ++
Sbjct: 337 LARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLT-GTKAGDGAAEVAGTLAELEVVS 395
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+++T AGL+ LR L + KVT
Sbjct: 396 FRGTQLTDAGLKAAAHGARLRFLYVRGSKVT 426
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 148/344 (43%), Gaps = 35/344 (10%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L L+GL +T ++F ++ +T + AG +L L C R+ G + L +L
Sbjct: 95 LATLKGLKCVTEVTFA-SDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGV--LAQLP 151
Query: 159 SLNIKWCN---CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
L KW + +TD L + L+++ + +K TD+G+ L L + + +
Sbjct: 152 RL--KWVSLVGPVTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTATP 209
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
+ + L+++ AA L+++SAL L L L+ ++D G + +
Sbjct: 210 VTGTAFAEPGWSRLREIDATQTA---FNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLA 266
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ +L+ L+L + D + L G+ L LNL+ G+ L+ L L++
Sbjct: 267 RARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAE 326
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR----------- 384
T+ + HL+ L L +++LS ++D L +LA L L +L+L
Sbjct: 327 TRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAG 386
Query: 385 -------------QITDTGLAALTSLTGLTHLDLFGARITDSGA 415
Q+TD GL A L L + G+++T GA
Sbjct: 387 TLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRGA 430
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 121/280 (43%), Gaps = 29/280 (10%)
Query: 263 RCQLSDDGCEKFSKIGSLK-VLNLGF--NEITDECLVHLKGLTNLESLNLDSCG-IGDEG 318
R + + D + + LK V + F + +TD L + G +L S L CG + G
Sbjct: 84 RVERTADLAPALATLKGLKCVTEVTFASDRLTDTDLACIAGFEHLRSFGLRDCGRVTGAG 143
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L L LK + L +G HL + LE++ L T +D L++LA L +L S
Sbjct: 144 FGVLAQLPRLKWVSLVGPVTDEAGP-HLGRIKTLETVVLYRTKFTDAGLKELAALPALGS 202
Query: 379 LNLDARQITDT-----------------------GLAALTSLTGLTHLDLFGARITDSGA 415
+N+ A +T T GL A+++L L L L +TDSG
Sbjct: 203 VNVTATPVTGTAFAEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGL 262
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+L + L+ L + + D GV + + +L +LNL + +T L
Sbjct: 263 KHLARARALQELSLADTPVADTGVAALAGVQTLRVLNL-ERTGVTGAAFATFPVPAELRK 321
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
LN++ +R T A HL L L +L+L C VT + RL
Sbjct: 322 LNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARL 361
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + VTDSGL HL LQ L ++D G+ L G+ L L+ R +T
Sbjct: 252 LDATAVTDSGLKHLARARALQELSLA-DTPVADTGVAALAGVQTLRVLNLERTG-VTGAA 309
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F L KL+L +L L L +L++ C+ +TD+ + L+ L L
Sbjct: 310 FATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCD-VTDAGLARLADLKKLA 368
Query: 184 SLQISCSKVTDSGIAYLKG 202
+L ++ +K D G A + G
Sbjct: 369 NLDLTGTKAGD-GAAEVAG 386
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LSG DVTD+GL L D L +LD + DG E L+ L +SF R
Sbjct: 341 PALTNLSLSGCDVTDAGLARLADLKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSF-RG 398
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+T G+KA A L R + G V +G + + + C + +
Sbjct: 399 TQLTDAGLKAAAHGARL------RFLYVRGSKVTKRGAVDAGKVVREGCRIVAE 446
>gi|290994540|ref|XP_002679890.1| predicted protein [Naegleria gruberi]
gi|284093508|gb|EFC47146.1| predicted protein [Naegleria gruberi]
Length = 293
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 1/234 (0%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G + S+I L L++ N+I E + + L SLN+ GIG EG ++ + L
Sbjct: 17 EGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKNGIGVEGAKLISEMKQL 76
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L++S + G++ +S + L S+++S I + ++G+ L SLN+ +I+D
Sbjct: 77 TSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISGMKQLTSLNISKNEISD 136
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
G ++ + LT L ++ + I D GA YL K L SL+I + G K I ++ L
Sbjct: 137 EGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEGAKFISEMKQL 196
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
T L++S N + D+ E ISG+ L SLN+SN+ I G + + +K L SL +
Sbjct: 197 TSLDISNNL-IYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTSLDI 249
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 130/260 (50%), Gaps = 1/260 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT L++ + +S + L LN+ + + +G + S++ L L+
Sbjct: 21 FISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKNGIGVEGAKLISEMKQLTSLD 80
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I DE + + + L SL++ IG EG ++G+ L L +S ++ G +
Sbjct: 81 ISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISGMKQLTSLNISKNEISDEGAK 140
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + L S+ + +GI D + L+ + L SL++ + + G ++ + LT LD
Sbjct: 141 LISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSNPMGVEGAKFISEMKQLTSLD 200
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ I D GA ++ K L SL I + D G K I ++ LT L++ N + D+
Sbjct: 201 ISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTSLDICYN-EIGDEGA 259
Query: 465 ELISGLTGLVSLNVSNSRIT 484
+ ISG+ L SL V +RI+
Sbjct: 260 KFISGMKQLTSLYVYANRIS 279
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 11/236 (4%)
Query: 212 LCSMIIRLFCLHVF-----------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
L S + +L L++F ++ +++LT L++ G + + S+S + L L+
Sbjct: 45 LISEMKQLTSLNIFKNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLD 104
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
+++ ++ +G + S + L LN+ NEI+DE + + L SL + GI D+G
Sbjct: 105 ISKNEIGVEGAKLISGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAK 164
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L+ + L L++S +G G + +S + L S+++S I D ++G+ L SLN
Sbjct: 165 YLSEIKQLTSLDISSNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLN 224
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ I D G ++ + LT LD+ I D GA ++ K L SL + ++D
Sbjct: 225 ISNNIILDEGAKLISEMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRISD 280
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S + + G + + L SL+ F I G + + + LTSL
Sbjct: 23 SEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNI-FKNGIGVEGAKLISEMKQLTSLDI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G+K+ + + L LD+ + G + G+ +L SLNI N I+D
Sbjct: 82 S-GNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISGMKQLTSLNISK-NEISDEGA 139
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV----FLTSL 229
K +S + L SL I S + D G YL S I L S+ I + V F++ +
Sbjct: 140 KLISEMKQLTSLTIYKSGIDDKGAKYL------SEIKQLTSLDISSNPMGVEGAKFISEM 193
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
++LT L++ + + +S + L LN++ + D+G + S++ L L++ +NE
Sbjct: 194 KQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTSLDICYNE 253
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEG 318
I DE + G+ L SL + + I DE
Sbjct: 254 IGDEGAKFISGMKQLTSLYVYANRISDEA 282
>gi|46446627|ref|YP_007992.1| hypothetical protein pc0993 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400268|emb|CAF23717.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 478
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 121/224 (54%), Gaps = 7/224 (3%)
Query: 290 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 347
+TD LK NL+ L ++C + D+GL +L L L+ L L +V +GL HL+
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297
Query: 348 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 405
L L+ ++LSF I+D L L L++L+ L L +T GLA LT L L +LDL
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357
Query: 406 -FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+ +TD G A+LR L+ L++ LTDAG+ H+ L +LT L L LTD
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAG 417
Query: 464 LELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 506
L + L L LN+S+ R +T AGL HL PL L+ L L C+
Sbjct: 418 LAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCR 461
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 131/258 (50%), Gaps = 30/258 (11%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T A +L +L L CQ L+DDG + + +L+ L L G +++TD L HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL 357
L L+ L+L C I D GL +LT L L+ L L + + +GL HL+ L L+ ++L
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357
Query: 358 SFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
S+ ++D L L L +L+ L+L + ++TD GLA LT L LTHL L
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKL---------- 407
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
I LTDAG+ H++ L +L LNLS NLTD L + LT L
Sbjct: 408 -------------IWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQY 454
Query: 476 LNVSNSR-ITSAGLRHLK 492
LN+S+ R +T GL K
Sbjct: 455 LNLSDCRKLTDTGLASFK 472
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 125/263 (47%), Gaps = 37/263 (14%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ A ++C L+ L + D + +AS ++L + L G D VTD+GL HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASL-TALQHLGLRGCDKVTDAGLAHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD +FC I+D GL HL L+ L L ++ +T G+ L L LD
Sbjct: 297 TSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLD 356
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVT 193
L + GL +L+ L+ L+ L++ C +TD + + PL LT+LK I C K+T
Sbjct: 357 LSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLK--LIWCHKLT 414
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSA 252
D+G+A+L+ L L LNL C +T A L L
Sbjct: 415 DAGLAHLRPLV--------------------------ALKHLNLSSCRNLTDAGLAHLIP 448
Query: 253 LGSLFYLNLNRC-QLSDDGCEKF 274
L +L YLNL+ C +L+D G F
Sbjct: 449 LTALQYLNLSDCRKLTDTGLASF 471
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 121/255 (47%), Gaps = 30/255 (11%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI- 144
L F+ ++D L+ NL L+F A+T G+ A L L L L C ++
Sbjct: 230 LHFSNQTYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVT 289
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGL 203
GL +L L L+ L++ +C ITD+ + L+ LT L+ L + C +T +G+A+L L
Sbjct: 290 DAGLAHLTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPL 349
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
+LQ L L + +T L L L +L +L+L
Sbjct: 350 K-----------------------ALQYLDLSYWDN--LTDDGLAHLRPLVALQHLDLAN 384
Query: 264 C-QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV 320
C +L+D G + + +L L L + +++TD L HL+ L L+ LNL SC + D GL
Sbjct: 385 CYELTDAGLAHLTPLVALTHLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLA 444
Query: 321 NLTGLCNLKCLELSD 335
+L L L+ L LSD
Sbjct: 445 HLIPLTALQYLNLSD 459
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T +GL HL LQ LD ++ ++D GL HLR L L L +T G+
Sbjct: 336 ENLTGAGLAHLTPLKALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAH 395
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L L L C ++ GL +L+ L+ L+ LN+ C +TD+ + L LT L+ L
Sbjct: 396 LTPLVALTHLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYL 455
Query: 186 QIS-CSKVTDSGIAYLKG 202
+S C K+TD+G+A K
Sbjct: 456 NLSDCRKLTDTGLASFKA 473
>gi|406834160|ref|ZP_11093754.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 390
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 144/267 (53%), Gaps = 8/267 (2%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ L++ + DD + L L+L +ITD L +L + L+ L+L I D G
Sbjct: 95 ITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRTKISDAG 154
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L +L L NL L +++T V +G L+GL NL +N+S T ++D SL+ ++ + +L +
Sbjct: 155 LEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNT 214
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN--LRSLEICGGGLTD 436
L LD +TD GLA+L LT L L G +T S +L+ K L L +
Sbjct: 215 LILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGS---FLKELKGIPLEYLTLANSKCDG 271
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
K + L +L +L+L +NC + D ++ I+ + L +L++ N++IT + LK + +
Sbjct: 272 TTFKDVGTLKNLKMLSL-ENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPS 330
Query: 497 LRSLTLESCKVTANDIKRLQSRDLPNL 523
L SL++ S ++A ++++L++ PNL
Sbjct: 331 LVSLSINSTPISAEELRQLKAT--PNL 355
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 148/337 (43%), Gaps = 56/337 (16%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+ L Q P +D + Q L+ + L + +TD+GL +L LQ LD + +IS
Sbjct: 95 ITLDQSPIGDDDL--AVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRT-KIS 151
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D GLEHL+ L+NL +L + + G L GL
Sbjct: 152 DAGLEHLQ-------------------------TLVNLCELTIAETSVTDAGTAKLAGLK 186
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
L LN+ N +TD+ +K +S + NL +L + +TD G+A LK C
Sbjct: 187 NLRVLNVSKTN-VTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKD----------C-- 233
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
Q LT L+L+G P+T + L L + L YL L + +
Sbjct: 234 --------------QSLTFLSLDGIPLTGSFLKELKGI-PLEYLTLANSKCDGTTFKDVG 278
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ +LK+L+L + D + + + +LE+L+LD+ I ++ +V L + +L L ++
Sbjct: 279 TLKNLKMLSLENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPSLVSLSINS 338
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
T + + LR L NL+ + T ++ G + LA
Sbjct: 339 TPISAEELRQLKATPNLKLVKAHNTKVTRGDVDALAA 375
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 58/343 (16%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G + + L S + D L LK L L +I+D GL++L + L L R
Sbjct: 89 GVEVDQITLDQSPIGDDDLAVLKQTPQLVGLSLR-ATKITDAGLKYLSSVPRLQKLDLSR 147
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
I+ G++ L+NL +L + + G L GL L LN+ N +TD+ +K
Sbjct: 148 TK-ISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTN-VTDTSLKV 205
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+S + NL +L + +TD G+A LK C Q LT L
Sbjct: 206 ISEIPNLNTLILDGCNLTDVGLASLKD------------------C--------QSLTFL 239
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
+L+G P+T + L L + L YL L ++C DG F +G+LK
Sbjct: 240 SLDGIPLTGSFLKELKGI-PLEYLTLANSKC----DGT-TFKDVGTLK------------ 281
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
NL+ L+L++C + D + ++ + +L+ L L +T++ + L + +L
Sbjct: 282 ---------NLKMLSLENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPSLV 332
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
S++++ T IS LR+L +LK + ++T + AL +
Sbjct: 333 SLSINSTPISAEELRQLKATPNLKLVKAHNTKVTRGDVDALAA 375
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 168/374 (44%), Gaps = 51/374 (13%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D++ I++ D + SL R + A+ A + L ++V D + + +G
Sbjct: 44 DYSPVIEVKD----------RVNSLGGRAHMAVAAPAV-----LQSIVGKDWDGWDQFYG 88
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS 206
G ++++ + + + I D D+ L L L + +K+TD+G+ YL
Sbjct: 89 G-------VEVDQITLDQ-SPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYL------ 134
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
+S+ +L L+L ++ A L+ L L +L L + +
Sbjct: 135 --------------------SSVPRLQKLDLSRTKISDAGLEHLQTLVNLCELTIAETSV 174
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
+D G K + + +L+VLN+ +TD L + + NL +L LD C + D GL +L
Sbjct: 175 TDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQ 234
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+L L L + S L+ L G+ LE + L+ + + + + L +LK L+L+ +
Sbjct: 235 SLTFLSLDGIPLTGSFLKELKGIP-LEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPV 293
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
D +A++ ++ L L L +IT+ L++ +L SL I ++ ++ +K
Sbjct: 294 EDASIASIAAIASLETLSLDNTKITEQAIVELKDMPSLVSLSINSTPISAEELRQLKATP 353
Query: 447 SLTLLNLSQNCNLT 460
+L L+ + N +T
Sbjct: 354 NLKLVK-AHNTKVT 366
>gi|325106627|ref|YP_004267695.1| hypothetical protein Plabr_0042 [Planctomyces brasiliensis DSM
5305]
gi|324966895|gb|ADY57673.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 526
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 183/421 (43%), Gaps = 64/421 (15%)
Query: 55 QGSSLLSVDLSGSD------------------------VTDSGLIHLKDCSNLQSLDFNF 90
Q SL +DLSG+ VTD+GL ++K L+S+D N
Sbjct: 94 QLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQ 153
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
++S+ GL HL GL +L ++ RR +++ +K L+ L KLDL H GL
Sbjct: 154 N-KLSEAGLCHLEGLVSLREVNLRR-SSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSF 211
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-----------Y 199
L +L SL + N I D + PL L+SL +S + ++D + Y
Sbjct: 212 LTYFRRLRSLKLG-GNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLY 270
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE----GCPVT--AACLDSLSAL 253
+ G ++S L + + L L V T++ + LE G + AA L S +
Sbjct: 271 VPGTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVI 330
Query: 254 GSLF-------YLNLNR------CQLSDDGCEK---FSKI---GSLKVLNLGFNEITDEC 294
S +L L+R CQ +D FS + SLK L L + E
Sbjct: 331 RSRDVLQMHGCHLTLSRSGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQ 390
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L LK ++ L+SL L C E L L L L L+L DT V L+ L L +L +
Sbjct: 391 LQFLKNMSQLQSLALKQCTFPPEALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSN 450
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+ LS TG++ L L+ L+ L + + QI D + AL L HLD+ G IT+
Sbjct: 451 LCLSRTGVTATGLESLSSAPLLRDLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQ 510
Query: 414 G 414
G
Sbjct: 511 G 511
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 183/404 (45%), Gaps = 28/404 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + ++ + VTD+GL ++K L+S+D N ++S+ GL HL GL +L ++
Sbjct: 117 SKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQN-KLSEAGLCHLEGLVSLREVNL 175
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
RR+ ++ +K L+ L KLDL H GL L +L SL + N I D +
Sbjct: 176 RRS-SVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLG-GNRIEDDGL 233
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIA-----------YLKGLSISSVIFILCSMIIRLFCL 222
PL L+SL +S + ++D + Y+ G ++S L + + L L
Sbjct: 234 FPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTAVSDEGLQLLTSVSTLIAL 293
Query: 223 HVFLTSLQKLTLLNLE----GCPVT--AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
V T++ + LE G + AA L S + S L ++ C L+ S+
Sbjct: 294 DVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDVLQMHGCHLT------LSR 347
Query: 277 IGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
G + G + L+ ++L+SL L+ + E L L + L+ L L
Sbjct: 348 SGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQ 407
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
L L L L ++L T +SD SL+ L L SL +L L +T TGL +L+
Sbjct: 408 CTFPPEALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSNLCLSRTGVTATGLESLS 467
Query: 396 SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
S L L + +I D L FKNL+ L+I G +T+ G
Sbjct: 468 SAPLLRDLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQG 511
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 1/263 (0%)
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ L L+L CP + L +L L C + D E ++ SL+ L+L
Sbjct: 48 ENLQELDLTNCPCGSKILAQPEFQETLLKLKCQNCDIDFDTLELIGQLRSLQELDLSGTS 107
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+ D + L L L + + + D GL + LK ++L+ ++ +GL HL GL
Sbjct: 108 LDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQNKLSEAGLCHLEGL 167
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+L +NL + ++ +L+ L L L+ L+L T GL+ LT L L L G R
Sbjct: 168 VSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLGGNR 227
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I D G L F L SL++ G ++D +K + L L L + ++D+ L+L++
Sbjct: 228 IEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVP-GTAVSDEGLQLLTS 286
Query: 470 LTGLVSLNVSNSRITSAGLRHLK 492
++ L++L+V + +T +G++ L+
Sbjct: 287 VSTLIALDVRKTAVTPSGVQQLE 309
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 174/411 (42%), Gaps = 43/411 (10%)
Query: 122 QGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-L 179
Q + F L NL +LDL C G + + + L +K NC D D L G L
Sbjct: 38 QSPEDFPALPENLQELDLTNCP--CGSKILAQPEFQETLLKLKCQNCDIDFDTLELIGQL 95
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
+L+ L +S + + D G+ L + L++L +
Sbjct: 96 RSLQELDLSGTSLDDIGMEKL--------------------------SKLEQLRTFAIAK 129
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
VT L + A L ++LN+ +LS+ G + SL+ +NL + + L L+
Sbjct: 130 TRVTDNGLRYVKAFRFLKSIDLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQ 189
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
L LE L+L + GL LT L+ L+L ++ GL L LES++LS
Sbjct: 190 RLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSG 249
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
T ISD +++ LA L LK L + ++D GL LTS++ L LD+ +T SG L
Sbjct: 250 TPISDQAMKTLAQLPRLKRLYVPGTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLE 309
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLT--LLNLSQNCNL--------TDKTLELISG 469
++ L + V +D+ + L LS++ ++ + S
Sbjct: 310 QHSPGLKIKSDAADLPSSHVIRSRDVLQMHGCHLTLSRSGDVIACQAGEDASPPIHWFSA 369
Query: 470 L---TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L + L SL ++ + L+ LK + L+SL L+ C + L+S
Sbjct: 370 LESFSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQCTFPPEALSVLKS 420
>gi|330506767|ref|YP_004383195.1| internalin-A [Methanosaeta concilii GP6]
gi|328927575|gb|AEB67377.1| internalin-A, putative [Methanosaeta concilii GP6]
Length = 567
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 203/384 (52%), Gaps = 53/384 (13%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
I L+ D+ I G L+ + LE+L+++ N I SD LSGLT LK L++S +
Sbjct: 60 IKLLNADMSSIKDITG----LERCINLENLSLR-ENEI--SDASSLSGLTGLKRLELSSN 112
Query: 191 KVTD---SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN---LEGCPVTA 244
++TD SG+A L+ LS L+ H+ SL LT L+ L G +
Sbjct: 113 QITDVSLSGLANLETLS--------------LWDNHITNVSLSGLTNLDTLLLWGNKIIN 158
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
SLS L +L L+L+ Q++D S + +L L+L N+ITD + L GL NL
Sbjct: 159 VS--SLSGLTNLTDLDLSTNQITD--ASPLSGLTNLTDLDLDNNQITD--VSSLSGLINL 212
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
+L+L S I + V+L+GL N+ L+L Q+ LSGLTNL +++S I+D
Sbjct: 213 MNLDLSSNRITN---VSLSGLTNVVWLDLWGNQITD---VTLSGLTNLTWLDVSRNQIAD 266
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
S L+GL++L L L QITD +++L+ LT LT LDL +ITD A+ L NL
Sbjct: 267 VS--SLSGLTNLTKLYLGCNQITD--VSSLSGLTNLTDLDLSTNQITD--ASPLSGLTNL 320
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L++ + D + DL++LT L LS N + D + +SGLT L L++SN++I
Sbjct: 321 TYLDLDNNRINDVS---LSDLTNLTDLELSNN-QIND--VSSLSGLTNLKDLDLSNNQIN 374
Query: 485 SAGLRHLKPLKNLRSLTLESCKVT 508
+ L L NL L L S ++T
Sbjct: 375 --DISSLSGLTNLTDLELSSNEIT 396
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 218/449 (48%), Gaps = 91/449 (20%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGM-------------------KAFAGLINLVKLDL 138
+ L GL+NLT L N A + + +GLINL+ LDL
Sbjct: 158 NVSSLSGLTNLTDLDLSTNQITDASPLSGLTNLTDLDLDNNQITDVSSLSGLINLMNLDL 217
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
RI V+L GL + L++ W N ITD LSGLTNL L +S +++ D ++
Sbjct: 218 S-SNRITN--VSLSGLTNVVWLDL-WGNQITD---VTLSGLTNLTWLDVSRNQIAD--VS 268
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L GL+ + +++ C+ I + L+ L LT L+L +T A LS L +L Y
Sbjct: 269 SLSGLTNLTKLYLGCNQITDVSS----LSGLTNLTDLDLSTNQITDAS--PLSGLTNLTY 322
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L+L+ +++D V L LTNL L L + I D
Sbjct: 323 LDLDNNRIND---------------------------VSLSDLTNLTDLELSNNQIND-- 353
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ +L+GL NLK L+LS+ Q+ + LSGLTNL + LS I++ + L+ L+SL+
Sbjct: 354 VSSLSGLTNLKDLDLSNNQIN--DISSLSGLTNLTDLELSSNEITN--ISSLSSLASLRC 409
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L+LD QI D +++L++LT L L L TD A+ L + NLR L++ +TD
Sbjct: 410 LDLDNNQIID--VSSLSALTSLKWLRLCSNHATD--ASSLSSLVNLRWLDLSSNQITD-- 463
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
V + L +L LNLS N +TD + +SGL L L++S+++IT + PL NL
Sbjct: 464 VSPLSGLYNLGWLNLSSN-QITD--VSPLSGLANLTGLDLSSNQIT-----DVSPLSNLT 515
Query: 499 SLTLESCKVTANDIKRLQSRDLPNLVSFR 527
+L L+S+ +P+ + R
Sbjct: 516 NLIW----------MDLRSKQIPDASTLR 534
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 133/421 (31%), Positives = 198/421 (47%), Gaps = 76/421 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +TD+ L +NL LD + QI+D + L GL NL +L N
Sbjct: 166 TNLTDLDLSTNQITDAS--PLSGLTNLTDLDLDNN-QITD--VSSLSGLINLMNLDLSSN 220
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIH-GGLVNL----------------KGLMKL 157
+ +GL N+V LDL + T + GL NL GL L
Sbjct: 221 RITNV----SLSGLTNVVWLDLWGNQITDVTLSGLTNLTWLDVSRNQIADVSSLSGLTNL 276
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
L + CN ITD + LSGLTNL L +S +++TD+ + L GL+ + + + + I
Sbjct: 277 TKLYLG-CNQITD--VSSLSGLTNLTDLDLSTNQITDA--SPLSGLTNLTYLDLDNNRIN 331
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
V L+ L LT L L + SLS L +L L+L+ Q++D S +
Sbjct: 332 -----DVSLSDLTNLTDLELSNNQINDVS--SLSGLTNLKDLDLSNNQIND--ISSLSGL 382
Query: 278 GSLKVLNLGFNEITD----------ECL----------VHLKGLTNLESLNLDSCGIGDE 317
+L L L NEIT+ CL L LT+L+ L L S D
Sbjct: 383 TNLTDLELSSNEITNISSLSSLASLRCLDLDNNQIIDVSSLSALTSLKWLRLCSNHATDA 442
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
+L+ L NL+ L+LS Q+ + + LSGL NL +NLS I+D S L+GL++L
Sbjct: 443 S--SLSSLVNLRWLDLSSNQI--TDVSPLSGLYNLGWLNLSSNQITDVS--PLSGLANLT 496
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICG 431
L+L + QITD ++ L++LT L +DL +I D+ + + +R L I
Sbjct: 497 GLDLSSNQITD--VSPLSNLTNLIWMDLRSKQIPDASTLRISQASNNYIYPTIRFLTIVK 554
Query: 432 G 432
G
Sbjct: 555 G 555
>gi|54294508|ref|YP_126923.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
gi|53754340|emb|CAH15819.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
Length = 464
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 162/360 (45%), Gaps = 28/360 (7%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+++SLN++ N I D K L+ +L +L + + + D G
Sbjct: 45 EIKSLNLR-NNNIGDEGAKALAANQSLSTLNLRANNIGDEGA------------------ 85
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
L + Q L+ LNL + A +L+A SL LNL + D+G + +
Sbjct: 86 --------KALAANQSLSTLNLSYNNIGAEGAKALAANQSLSTLNLRANNIGDEGAKALA 137
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
SL LNL +N I DE L +L +LNL + IGDEG L +L L LS
Sbjct: 138 ANQSLSTLNLRYNNIGDEGAKALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSY 197
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+ + G + L+ +L ++NL + I + LA SL +LNL I D G AL
Sbjct: 198 NNIRAEGAKALAANQSLSTLNLRYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALA 257
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
+ L+ L+L I D GA L ++L +L + + D G K + SL+ LNLS
Sbjct: 258 ANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSY 317
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
N N+ + + ++ L +LN+S + I G + L ++L +L L + A K L
Sbjct: 318 N-NIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKAL 376
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 157/363 (43%), Gaps = 28/363 (7%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G + L +L++L+ R NN I +G KA A +L L+L G L
Sbjct: 56 IGDEGAKALAANQSLSTLNLRANN-IGDEGAKALAANQSLSTLNLSYNNIGAEGAKALAA 114
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L +LN++ N I D K L+ +L +L + + + D G
Sbjct: 115 NQSLSTLNLR-ANNIGDEGAKALAANQSLSTLNLRYNNIGDEGA---------------- 157
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
L + Q L+ LNL + +L+A SL LNL+ + +G +
Sbjct: 158 ----------KALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKA 207
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
+ SL LNL +N I E L +L +LNL IGDEG L +L L L
Sbjct: 208 LAANQSLSTLNLRYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNL 267
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
S +G G + L+ +L ++NLS+ I D + LA SL +LNL I G A
Sbjct: 268 SYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKA 327
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L + L+ L+L I D GA L ++L +L + + G K + SL+ LNL
Sbjct: 328 LAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNL 387
Query: 454 SQN 456
S N
Sbjct: 388 SYN 390
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 1/291 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
FL + ++ LNL + +L+A SL LNL + D+G + + SL LN
Sbjct: 39 FLNTNPEIKSLNLRNNNIGDEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLN 98
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L +N I E L +L +LNL + IGDEG L +L L L +G G +
Sbjct: 99 LSYNNIGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAK 158
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L+ +L ++NL I D + LA SL +LNL I G AL + L+ L+
Sbjct: 159 ALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLN 218
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L I GA L ++L +L + + D G K + SL+ LNLS N N+ D+
Sbjct: 219 LRYNNIRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYN-NIGDEGA 277
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ ++ L +LN+S + I G + L ++L +L L + A K L
Sbjct: 278 KALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKAL 328
>gi|325109499|ref|YP_004270567.1| hypothetical protein Plabr_2946 [Planctomyces brasiliensis DSM
5305]
gi|324969767|gb|ADY60545.1| leucine-rich repeat cysteine-containing subtype [Planctomyces
brasiliensis DSM 5305]
Length = 381
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 7/242 (2%)
Query: 274 FSKIGSLKVLNLGF--NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
K G +++ + F E++ E L L L L SL L GD+ L+ + L+ L
Sbjct: 68 MRKNGDDQIIEVDFIGKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENL 127
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQIT 387
+L + V ++GL HL GL L+++ LS T + DG + +A L LK L LD I+
Sbjct: 128 DLRECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWIS 187
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 446
GL L LT L L L + D L F LR L + L+ G++ I LS
Sbjct: 188 GDGLQQLKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLS 247
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
L L++S++ +L++ + +S LT L LN+ I+ AG+ HL PL L L L++ +
Sbjct: 248 KLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQ 307
Query: 507 VT 508
++
Sbjct: 308 LS 309
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 6/229 (2%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLN----RCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
L+L CPV+ A L L L L L L+ + D G E +K+ LKVL L F I
Sbjct: 127 LDLRECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWI 186
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 349
+ + L LK LT+L L L S +GDE L L+ L+ L +S +Q+ G++ +S L
Sbjct: 187 SGDGLQQLKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQL 246
Query: 350 TNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ LE +++S + +S+ + L+ L+ L LNL I+D G+ L LT LT L+L
Sbjct: 247 SKLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNT 306
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
+++D+G + L+ K L+ L + +++AG+ + +L SL L +++
Sbjct: 307 QLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTA 355
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 8/290 (2%)
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
G V+ L++L+ L L L L DD K L+ L+L +++ L HL
Sbjct: 83 GKEVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHL 142
Query: 299 KGLTNLESLNLD----SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
GL L++L L + + D G+ ++ L LK L L + GL+ L LT+L
Sbjct: 143 VGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRE 202
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLF-GARITD 412
+ L+ T + D L+ L+ L+ L + Q++ G+ ++ L+ L LD+ + +++
Sbjct: 203 LYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSN 262
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+ L L L + ++DAGV+H+ L+ LT LNL N L+D L + +
Sbjct: 263 DDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLD-NTQLSDAGLSTLKEMKE 321
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
L L++ +++I++AGL L LK+L L + V + +LQ +LP+
Sbjct: 322 LKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKLQP-ELPD 370
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 11/294 (3%)
Query: 84 QSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
Q ++ +F ++S LE L L L SL R +NA + A L LDL C
Sbjct: 75 QIIEVDFIGKEVSPEALEALAKLPKLRSLLLRESNA-GDDALIAVGKCSQLENLDLRECP 133
Query: 143 RIHGGLVNLKGLMKLESLNIKW---CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ GL +L GL KL++L + + D M+ ++ L LK L + ++ G+
Sbjct: 134 VSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQ 193
Query: 200 LKGLSISSVIFILCSMI--IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
LK L+ +++ +++ L L F L+KL + L ++ + +S L L
Sbjct: 194 LKPLTDLRELYLASTLVGDEDLKALSQF-PELRKLRVSKL--SQLSGQGIQEISQLSKLE 250
Query: 258 YLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
L+++ LS+D SK+ L LNL I+D + HL LT L LNLD+ + D
Sbjct: 251 ELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLSD 310
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
GL L + LK L L TQ+ ++GL LS L +L+ + ++ T ++ + KL
Sbjct: 311 AGLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKL 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 123/309 (39%), Gaps = 84/309 (27%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDGGLEHLRGLSNLTSLS- 112
S L ++DL V+++GL HL L++L + + DGG+E + L L L+
Sbjct: 122 SQLENLDLRECPVSNAGLAHLVGLEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLAL 181
Query: 113 ----------------------FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLV 149
+ + + + +KA + L KL + + +++ G G+
Sbjct: 182 DFLWISGDGLQQLKPLTDLRELYLASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQ 241
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
+ L KLE L++ + +++ D+ LS LT L L + ++D+G+ +L
Sbjct: 242 EISQLSKLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRVPISDAGVEHL--------- 292
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
P+T L +LNL+ QLSD
Sbjct: 293 ------------------------------APLT-----------KLTWLNLDNTQLSDA 311
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G ++ LK L+LG +I++ L L L +L+ L + + EG+ L
Sbjct: 312 GLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEGVDKLQP----- 366
Query: 330 CLELSDTQV 338
EL DT++
Sbjct: 367 --ELPDTEI 373
>gi|290981666|ref|XP_002673551.1| predicted protein [Naegleria gruberi]
gi|284087135|gb|EFC40807.1| predicted protein [Naegleria gruberi]
Length = 438
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 117/458 (25%), Positives = 209/458 (45%), Gaps = 84/458 (18%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+++ + + + G+ +L +C L S + + IS G +L L LT+L R
Sbjct: 31 GIELTSIEIGYNRIGNEGVKYLSECKELTSANL-YGNNISAEGASYLTKLK-LTNLDIRT 88
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + A+G K F G ++ +K+ LNI N I K
Sbjct: 89 N-ELGAEGAK-FIGQLSQLKI-----------------------LNI-GVNDICAEGAKY 122
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L L L +L I+C+++ + G SIS +++LT L
Sbjct: 123 LVALNQLTNLGINCNRIGEEGAK-----SISE---------------------MKQLTNL 156
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
++ + ++ +S +G+L L + L +GC+K K+ L L++ N+I E
Sbjct: 157 DISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIRKLKQLTRLSIYDNKIGAEGA 216
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
+ + L L +++ I +EG ++ L NL L++S ++GS G +H+S L +
Sbjct: 217 KFISEMEQLMFLEINNNSIRNEGTEYISQLGNLTELDISHNEIGSEGAKHISQFKQLTCL 276
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
S+ I+ S L+ L+ L L + + I D + ++T+L LT L L G I+D+G
Sbjct: 277 RFSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTILYLNGNNISDNGC 336
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
K+I +L+ LT L+++ N N++D+ + +S LT L
Sbjct: 337 ------------------------KNISELTQLTDLSMALN-NISDEGCKFLSQLTQLTE 371
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
L+VS +RI + G ++ +K L+ L ++ AN+I+
Sbjct: 372 LDVSYNRIGNIGAEYINEMKQLKHLAIQ-----ANNIR 404
>gi|344170515|emb|CCA82933.1| leucine-rich-repeat type III effector protein (GALA5) [blood
disease bacterium R229]
Length = 533
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 175/376 (46%), Gaps = 19/376 (5%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMI----IRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
++ G L G + + + + + I + LTSL ++ G
Sbjct: 197 NGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLD----ISENGIGDEG 252
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
AC +L+ L LN+NR ++ +G + + +L L++G N+I DE + L L
Sbjct: 253 AC--ALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARL 310
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
+LN++ +G +G+ L L L + +G +G R L+ T+L ++++ GIS
Sbjct: 311 TTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISP 370
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
+ LA ++L +LNL I D G A ++ T L L + ++D+GA L K L
Sbjct: 371 AGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTL 430
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
+L+ + DAG + + +LT L++ N + + ++ TGL SL++ N+R+T
Sbjct: 431 TTLDAGDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTGLASLDLRNNRVT 489
Query: 485 SAGLRHLKPLKNLRSL 500
AG+R L + L SL
Sbjct: 490 EAGVRALLANRTLSSL 505
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 125/443 (28%), Positives = 200/443 (45%), Gaps = 35/443 (7%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
RR+ + Q ++A + L V+ D+ + R GL +K LE L +
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129
Query: 169 TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLSISSVIFILCSMII---RLFCLH 223
TD+D++ L +L L +S C +T +GIA+L L + + + + RL H
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANH 187
Query: 224 VFLTSLQ------------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
LTSL +LT L++ + A +L+A +L L+++
Sbjct: 188 PTLTSLDVSNGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENG 247
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ D+G + L LN+ N I E L L SL++ IGDEG+ L
Sbjct: 248 IGDEGACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAAN 307
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L + T+VG+ G+ L+ L S+ + I D R LA +SL +L++++
Sbjct: 308 ARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNG 367
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
I+ G AL + T LT L+L I D+GA L SL + GL+DAG +
Sbjct: 368 ISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAAS 427
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+LT L+ N + D ++ L +L+V ++ I +AG R L L SL L +
Sbjct: 428 KTLTTLDAGDNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNN 486
Query: 506 KVTANDIKR-LQSRDLPNL-VSF 526
+VT ++ L +R L +L VSF
Sbjct: 487 RVTEAGVRALLANRTLSSLGVSF 509
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 172/387 (44%), Gaps = 10/387 (2%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L LD + C I+ G+ HL L L L+ R + I +G + A L LD+
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHLSHLP-LVRLNVR-DQRIGVEGARLLANHPTLTSLDVS 196
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L G +L +L++ N I K L+ L SL IS + + D G
Sbjct: 197 NGRIGPEGARALAGNTRLTTLSVS-HNRIGAEGAKALAASETLTSLDISENGIGDEGACA 255
Query: 200 LKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L + ++ + L R+ L + + LT L++ G + + +L+A L
Sbjct: 256 L---ATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTT 312
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
LN+ R ++ DG + +L L + N I D L T+L +L+++S GI G
Sbjct: 313 LNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAG 372
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L L L L +G +G + S T L S+++ G+SD LA +L +
Sbjct: 373 AQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTT 432
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L+ I D G AL + LT LD+ I ++GA L L SL++ +T+AG
Sbjct: 433 LDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAG 492
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLE 465
V+ + L++ TL +L + N K E
Sbjct: 493 VRAL--LANRTLSSLGVSFNYCSKPTE 517
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 5/235 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ S T L SL + + ++D+G L S + IR L + + LT
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATTLAA-SKTLTTLDAGDNTIRDAGARA-LAANRTLT 455
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L++ + A +L+A L L+L ++++ G +L L + FN
Sbjct: 456 TLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRALLANRTLSSLGVSFN 510
>gi|290998898|ref|XP_002682017.1| predicted protein [Naegleria gruberi]
gi|284095643|gb|EFC49273.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 13/303 (4%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
+N+K + DS +P +S + L SL IS +++ G Y+ ++ L S+ I
Sbjct: 109 VNLKVSRRLLDSLEQPKFISEMKQLTSLNISDNQIGLEGAKYISEMTQ------LTSLDI 162
Query: 218 RLFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+ + V F++ +++LT L++ + + +S + L L+++ Q+ +G +
Sbjct: 163 SVNRIGVEGAKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKY 222
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S++ L L++ N I E + + L SLN+ IG EG+ ++ + L L++
Sbjct: 223 ISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDI 282
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
SD Q+G G +++S +T L S+++S I D + ++ + L SL++ QI G
Sbjct: 283 SDNQIGL-GAKYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKF 341
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
++ +T LT L + RI GA ++ K L SL+I G + D GVK I ++ LT LN+
Sbjct: 342 ISEMTQLTSLVITSNRIGVEGAKFISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNI 401
Query: 454 SQN 456
S N
Sbjct: 402 SVN 404
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 155/315 (49%), Gaps = 38/315 (12%)
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL------SALGSLFYLNLNRCQLSDDG 270
++LF F+ S+ +NL V+ LDSL S + L LN++ Q+ +G
Sbjct: 96 VQLFMKSQFMNSI-----VNL---KVSRRLLDSLEQPKFISEMKQLTSLNISDNQIGLEG 147
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ S++ L L++ N I E + + L SL++ IG EG+ ++ + L
Sbjct: 148 AKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTS 207
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--------- 381
L++SD Q+G G +++S +T L S+++S I + ++ + L SLN+
Sbjct: 208 LDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEG 267
Query: 382 -----DARQIT-------DTGLAA--LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+ +Q+T GL A ++ +T LT LD+ RI D GA ++ K L SL
Sbjct: 268 VKFISEMKQLTSLDISDNQIGLGAKYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSL 327
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
+IC + G K I +++ LT L ++ N + + + IS + L SL++S +RI G
Sbjct: 328 DICDNQIGVEGAKFISEMTQLTSLVITSN-RIGVEGAKFISEMKQLTSLDISGNRIGDEG 386
Query: 488 LRHLKPLKNLRSLTL 502
++ + +K L SL +
Sbjct: 387 VKFISEMKQLTSLNI 401
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 140/307 (45%), Gaps = 31/307 (10%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
+ LTSL+ +N I +G K + + L LD+ RI G + + +L SL+I
Sbjct: 130 MKQLTSLNIS-DNQIGLEGAKYISEMTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLDIS 187
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
N I +K +S + L SL IS +++ G Y+
Sbjct: 188 -VNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYI----------------------- 223
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ + +LT L++ + +S + L LN++ ++ +G + S++ L L
Sbjct: 224 ---SEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSL 280
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
++ N+I ++ +T L SL++ IGDEG ++ + L L++ D Q+G G
Sbjct: 281 DISDNQIGLGA-KYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGA 339
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ +S +T L S+ ++ I + ++ + L SL++ +I D G+ ++ + LT L
Sbjct: 340 KFISEMTQLTSLVITSNRIGVEGAKFISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSL 399
Query: 404 DLFGARI 410
++ RI
Sbjct: 400 NISVNRI 406
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 131/289 (45%), Gaps = 12/289 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S + + G ++ + + L SLD + +I G + + + LTSL
Sbjct: 128 SEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISVN-RIGVEGAKFISEMKQLTSLDI 186
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G+K + + L LD+ G + + +L SL+I N I
Sbjct: 187 SVNR-IGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDIS-VNRIGVEGA 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII---RLFCLHVFLTSLQ 230
K +S + L SL IS +++ G+ ++ + L S+ I ++ +++ +
Sbjct: 245 KFISEMKQLTSLNISVNRIGVEGVKFISEMKQ------LTSLDISDNQIGLGAKYISEMT 298
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+LT L++ + +S + L L++ Q+ +G + S++ L L + N I
Sbjct: 299 QLTSLDISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRI 358
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
E + + L SL++ IGDEG+ ++ + L L +S ++G
Sbjct: 359 GVEGAKFISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVNRIG 407
>gi|300704275|ref|YP_003745878.1| leucine-rich-repeat type III effector protein (gala6) [Ralstonia
solanacearum CFBP2957]
gi|299071939|emb|CBJ43268.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CFBP2957]
Length = 519
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 225/503 (44%), Gaps = 63/503 (12%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQGS 57
R++++++ N SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 2 REVNRELRN---ASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKALPP 55
Query: 58 SLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 56 GVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLSLT 113
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN 166
+I + A A ++ LDL VN+ G L SLN+ N
Sbjct: 114 -GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLVSLNLH-NN 162
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
I D L+ LKSL S + + D+G+ G + ++V
Sbjct: 163 GIGDEGALALATSGTLKSLNASNNGIGDAGVL---GFADNTV------------------ 201
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
LT LNL G + A +L SL L+L+ +L D G + + SL LN+
Sbjct: 202 -----LTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVR 256
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
NEI D+ L T L+SLNL IG G L G L+ L+L + G L
Sbjct: 257 SNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASAL 316
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+ T+L S++L I D R LA +L L+L I D G AL LT L+L+
Sbjct: 317 ARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLY 376
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
G + D GAA L L SL + + G +H+ ++LT L+LS+N L + E
Sbjct: 377 GNEVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-RLGPEGAEA 435
Query: 467 ISGLTGLVSLNVSNSRITSAGLR 489
+S T L +LNVS++ I AG R
Sbjct: 436 LSLSTVLTTLNVSDNAIGEAGAR 458
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 181/433 (41%), Gaps = 59/433 (13%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL LTS+ F+ +T + +KA + LD+ RCT G V+ GL L +
Sbjct: 29 HLGKYPALTSVRFK--GELTLEALKALP--PGVEHLDISRCT---GRGVSNAGLAHLAT- 80
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LSISSVIFILCSMIIRL 219
+PL KSL ++ ++ G L S++S+ CS+ R
Sbjct: 81 -------------RPL------KSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRA 121
Query: 220 FCLHVFLTSLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
S+ L L +N+ G P A L S L LNL+ + D+G + G
Sbjct: 122 ATALAQSRSIASLDLSVNMIG-PDGARALAS----APLVSLNLHNNGIGDEGALALATSG 176
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+LK LN N I D ++ T L LNL IG G L +L L+LS ++
Sbjct: 177 TLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRL 236
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G +G + L+G +L S+N+ I D LA ++LKSLNL I G AL T
Sbjct: 237 GDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGST 296
Query: 399 GLTHLDL-------FGA-----------------RITDSGAAYLRNFKNLRSLEICGGGL 434
L LDL +GA RI D GA L + L L++ +
Sbjct: 297 TLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNI 356
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
DAG + + SLT LNL N + D ++ L SLN+ +RI G +HL
Sbjct: 357 HDAGAQALAGNGSLTSLNLYGN-EVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKS 415
Query: 495 KNLRSLTLESCKV 507
L L L ++
Sbjct: 416 ATLTELDLSENRL 428
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 136/301 (45%), Gaps = 11/301 (3%)
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQ---L 266
++ + IR + L LT + +G L++L AL + +L+++RC +
Sbjct: 15 VVTHLTIRDPAMFAHLGKYPALTSVRFKG----ELTLEALKALPPGVEHLDISRCTGRGV 70
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
S+ G + LK L+L EI E L +L SL+L C IGD L
Sbjct: 71 SNAGLAHLATR-PLKSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRAATALAQSR 129
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
++ L+LS +G G R L+ L S+NL GI D LA +LKSLN I
Sbjct: 130 SIASLDLSVNMIGPDGARALASAP-LVSLNLHNNGIGDEGALALATSGTLKSLNASNNGI 188
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
D G+ T LT L+L G I +GA LR +L L++ L DAG + +
Sbjct: 189 GDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQALAGSR 248
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
SLT LN+ N + D E ++ T L SLN+S + I G L LR L L C
Sbjct: 249 SLTSLNVRSN-EIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCA 307
Query: 507 V 507
+
Sbjct: 308 I 308
>gi|290984863|ref|XP_002675146.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284088740|gb|EFC42402.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 458
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 145/294 (49%), Gaps = 13/294 (4%)
Query: 220 FCLHV--FLTSLQKLTL---LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
F HV F+ SL LT+ + EG A C+ L L +L N+ ++ ++G + F
Sbjct: 116 FDCHVLEFMGSLNNLTIRSKIRNEG----AKCIPQLKQLTNL---NVEDNKIGNEGVKCF 168
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ L N+ N+I DE ++ ++ L +N+ + IG+ G ++ + L L +
Sbjct: 169 SELKHLTNFNIRNNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEYISQMKQLTNLNIH 228
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
++G G RH+S + L +++ + + + + L+ + L L ++ ++ + G +
Sbjct: 229 GNRIGDKGARHISEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFV 288
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+ L LT L + I +GA Y+ K L L I G + + G +H+K ++ LT LN+
Sbjct: 289 SELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIG 348
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
N L + IS + L SL++ + I G +H+ LKNLR L + +T
Sbjct: 349 YN-RLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDIGRNNIT 401
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 158/331 (47%), Gaps = 28/331 (8%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L +L +LN++ N I + +K S L +L + I +K+ D G Y+ +S
Sbjct: 147 LKQLTNLNVE-DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMS--------- 196
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+LT +N+ + + +S + L LN++ ++ D G
Sbjct: 197 -----------------QLTCMNIGNNNIGEPGAEYISQMKQLTNLNIHGNRIGDKGARH 239
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S++ L L++G+N + + +L + L L ++ + + G ++ L L L +
Sbjct: 240 ISEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCI 299
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
+G +G R+++ + L +++ I + R L ++ L +LN+ ++ G
Sbjct: 300 GANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKF 359
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
++ + LT LD+F I D GA ++ KNLR L+I +TD G K++ L+ LT L++
Sbjct: 360 ISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSI 419
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
+ N NL+D+ + I+ +T L L++ + I+
Sbjct: 420 TYN-NLSDEGAKYINTMTQLTKLDIGGNAIS 449
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 166/357 (46%), Gaps = 9/357 (2%)
Query: 81 SNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
N+QSL+ N D LE + L+NLT S RN +G K L L L++E
Sbjct: 102 QNIQSLNVNQYFNTFDCHVLEFMGSLNNLTIRSKIRN-----EGAKCIPQLKQLTNLNVE 156
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ G+ L L + NI+ N I D K +S ++ L + I + + + G Y
Sbjct: 157 DNKIGNEGVKCFSELKHLTNFNIR-NNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEY 215
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
+ + + + I + I H+ + ++ LT L++ + LS + L YL
Sbjct: 216 ISQMKQLTNLNIHGNRIGDKGARHI--SEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYL 273
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
+ +L ++G + S++ L +L +G N I ++ + L L++ IG+EG
Sbjct: 274 FIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGGAKIGEEGA 333
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+L + L L + ++GS G + +S + L S+++ + I D + ++ L +L+ L
Sbjct: 334 RHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKL 393
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
++ ITD G ++ L LTHL + ++D GA Y+ L L+I G ++D
Sbjct: 394 DIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLTKLDIGGNAISD 450
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 5/155 (3%)
Query: 349 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L N++S+N++ + D + + G SL +L + ++ I + G + L LT+L++
Sbjct: 101 LQNIQSLNVNQYFNTFDCHVLEFMG--SLNNLTIRSK-IRNEGAKCIPQLKQLTNLNVED 157
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+I + G K+L + I + D G K+I +S LT +N+ N N+ + E I
Sbjct: 158 NKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQLTCMNIGNN-NIGEPGAEYI 216
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
S + L +LN+ +RI G RH+ ++ L L +
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDI 251
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 131/277 (47%), Gaps = 10/277 (3%)
Query: 45 NDKWMDVIA---SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
N+K MD A SQ S L +++ +++ + G ++ L +L+ + +I D G H
Sbjct: 181 NNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEYISQMKQLTNLNIH-GNRIGDKGARH 239
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+ + LT L NN + G + + + L L +E G + L +L L
Sbjct: 240 ISEMEGLTHLDIGYNN-LGNLGSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILC 298
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
I N I + + ++ + L L I +K+ + G +LK ++ + + I + RL
Sbjct: 299 I-GANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARHLKTMNQLTNLNIGYN---RLGS 354
Query: 222 LHV-FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
+ F++ +++LT L++ + +S L +L L++ R ++D+G + S++ L
Sbjct: 355 IGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQL 414
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L++ +N ++DE ++ +T L L++ I D+
Sbjct: 415 THLSITYNNLSDEGAKYINTMTQLTKLDIGGNAISDD 451
>gi|290996590|ref|XP_002680865.1| predicted protein [Naegleria gruberi]
gi|284094487|gb|EFC48121.1| predicted protein [Naegleria gruberi]
Length = 304
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 140/265 (52%), Gaps = 4/265 (1%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLE 305
+D L S+ L+ N Q+ + FSK+ +L L+L +NE +TD + + + ++
Sbjct: 2 IDYFPTLESVTDLSFNHHQVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSMR 61
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
LN+ IG + +V ++ + L+ L L + ++ + + +L LTNL+ +N S S G
Sbjct: 62 RLNIFCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNCS--PDSYG 119
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
+ L+ + SL SL L+ + + + ++ LT L HL L+ + I GA +L N +
Sbjct: 120 TSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFT 179
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
SL + G + DAG+ +I L++LT LNLS N L+D + + L L LN++ + I
Sbjct: 180 SLNLSGNVIRDAGLVNIGKLANLTFLNLSYNG-LSDSGITNLGNLRKLTDLNLNGNNIED 238
Query: 486 AGLRHLKPLKNLRSLTLESCKVTAN 510
G + + +L+ L L + ++T N
Sbjct: 239 QGAKIISKFSHLKYLQLRNNQITKN 263
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 142/287 (49%), Gaps = 29/287 (10%)
Query: 171 SDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
++ K S L NL +L +S ++ VTD+ + + S+I + L++F T +
Sbjct: 24 TNTKIFSKLKNLTALDLSYNELVTDAHVKEI-------------SLIPSMRRLNIFCTDI 70
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
K +++ + + L+SL LG L +L + K+ +LK LN +
Sbjct: 71 GKQSIVYISEMKL----LESL-ILGEL--------RLEAESVAYLKKLTNLKELNCSPDS 117
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
HL + +L SL L+ +E + N++ L +L L+L ++ + S G LS +
Sbjct: 118 YGTSA--HLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNI 175
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
++ S+NLS I D L + L++L LNL ++D+G+ L +L LT L+L G
Sbjct: 176 SSFTSLNLSGNVIRDAGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNN 235
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
I D GA + F +L+ L++ +T G ++ +L+SL L+L +N
Sbjct: 236 IEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSLDLREN 282
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 134/313 (42%), Gaps = 68/313 (21%)
Query: 52 IASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
I S+ +L ++DLS ++ VTD+ + + +++ L+ FC I + ++ + L S
Sbjct: 28 IFSKLKNLTALDLSYNELVTDAHVKEISLIPSMRRLNI-FCTDIGKQSIVYISEMKLLES 86
Query: 111 L---SFRRNNAITAQGMKAFAGLINLVKLDLERCTR-IHGGLVNLKGLMKLESL--NIKW 164
L R + A+ + L NL +L+ C+ +G +L + L SL N+K+
Sbjct: 87 LILGELR----LEAESVAYLKKLTNLKELN---CSPDSYGTSAHLSEMKSLNSLILNVKY 139
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
+ D++ +S LT+L L++ S + G
Sbjct: 140 N---KEEDIENISKLTSLNHLKLWNSNINSKGAE-------------------------- 170
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
FL+++ T LNL G + A L ++ L +L +LNL+ LSD G + L LN
Sbjct: 171 FLSNISSFTSLNLSGNVIRDAGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLN 230
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L N I D+G ++ +LK L+L + Q+ +G
Sbjct: 231 LNGN------------------------NIEDQGAKIISKFSHLKYLQLRNNQITKNGAN 266
Query: 345 HLSGLTNLESINL 357
+LS L +L S++L
Sbjct: 267 YLSNLNSLYSLDL 279
>gi|290974856|ref|XP_002670160.1| predicted protein [Naegleria gruberi]
gi|284083716|gb|EFC37416.1| predicted protein [Naegleria gruberi]
Length = 376
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 173/367 (47%), Gaps = 32/367 (8%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L N+ L LER R + GLMK L L+ + NCI +K + + NL L I
Sbjct: 35 LENIENLRLERNNRFFD--CQIIGLMKGLTVLSAE--NCIGTEGVKHICKMNNLTKLNIE 90
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+++ + G Y+ + +++LT LN+ + ++
Sbjct: 91 RNEIGEEGAKYI--------------------------SKMKQLTELNVGWNGIGKEGVE 124
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+S L +L L + C++ D+G + S++ L LN+ +N I++ +L L L L
Sbjct: 125 FISELKNLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLT 184
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L C I +EG ++ L L L++S+ +G +G+ ++SG+ L + + T + L+
Sbjct: 185 LCDCNISEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQ 244
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
K++ + + +LN+ + D G ++ + LT L++ + I+ GA ++ K L L
Sbjct: 245 KISEMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVRSDISTEGAKHISELKQLTDLN 304
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
I + G I ++ L +L++S N N+ E +S + L L++S++ I + G
Sbjct: 305 IGENNIGGEGAIAISKMNQLRILDISDN-NIGGIGAEHVSQMKQLTHLDISHNCIGNYGA 363
Query: 489 RHLKPLK 495
+ + +K
Sbjct: 364 KRINTMK 370
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 147/316 (46%), Gaps = 26/316 (8%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
++ LT+L+ E C T + + + +L LN+ R ++ ++G + SK+ L LN+G+N
Sbjct: 58 MKGLTVLSAENCIGTEG-VKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELNVGWN 116
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVN------------------------LTG 324
I E + + L NL L +++C I DEG + LT
Sbjct: 117 GIGKEGVEFISELKNLTLLEIEACRICDEGAKSISELKQLTHLNISYNNISNLGSKYLTE 176
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L L L L D + G +++S L L +++S I + ++G+ L L +
Sbjct: 177 LKQLTVLTLCDCNISEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFLYIYGT 236
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+ T L ++ + +T+L++ + D GA Y+ + K L LE+ ++ G KHI +
Sbjct: 237 NMYPTELQKISEMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVRSDISTEGAKHISE 296
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L LT LN+ +N N+ + IS + L L++S++ I G H+ +K L L +
Sbjct: 297 LKQLTDLNIGEN-NIGGEGAIAISKMNQLRILDISDNNIGGIGAEHVSQMKQLTHLDISH 355
Query: 505 CKVTANDIKRLQSRDL 520
+ KR+ + L
Sbjct: 356 NCIGNYGAKRINTMKL 371
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 156/356 (43%), Gaps = 56/356 (15%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
++GL+ L++ N I +G+K + NL KL++ER G + + +L LN
Sbjct: 58 MKGLTVLSA-----ENCIGTEGVKHICKMNNLTKLNIERNEIGEEGAKYISKMKQLTELN 112
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+ W N I ++ +S L NL L+I ++ D G SIS
Sbjct: 113 VGW-NGIGKEGVEFISELKNLTLLEIEACRICDEGAK-----SISE-------------- 152
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L++LT LN+ ++ L+ L L L L C +S++GC+ S++
Sbjct: 153 -------LKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCDCNISEEGCKYISEL---- 201
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
N++TD L++ + IG G+ ++G+ L L + T + +
Sbjct: 202 ------NQLTD--------------LDISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPT 241
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
L+ +S + + ++N+S+ + D + ++ + L L + I+ G ++ L LT
Sbjct: 242 ELQKISEMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVRSDISTEGAKHISELKQLT 301
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
L++ I GA + LR L+I + G +H+ + LT L++S NC
Sbjct: 302 DLNIGENNIGGEGAIAISKMNQLRILDISDNNIGGIGAEHVSQMKQLTHLDISHNC 357
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 135/299 (45%), Gaps = 24/299 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G++H+ ++NLT L+ R N I +G K + + L +L++ G+ +
Sbjct: 70 IGTEGVKHICKMNNLTKLNIER-NEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISE 128
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L L L I+ C I D K +S L L L IS + +++ G YL L +V+ +
Sbjct: 129 LKNLTLLEIEACR-ICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCD 187
Query: 214 SMIIRLFCLHV----------------------FLTSLQKLTLLNLEGCPVTAACLDSLS 251
I C ++ +++ +++L L + G + L +S
Sbjct: 188 CNISEEGCKYISELNQLTDLDISNNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKIS 247
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
+ + LN++ + D+G + S + L L + ++I+ E H+ L L LN+
Sbjct: 248 EMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGE 307
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
IG EG + ++ + L+ L++SD +G G H+S + L +++S I + +++
Sbjct: 308 NNIGGEGAIAISKMNQLRILDISDNNIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRI 366
>gi|290974964|ref|XP_002670214.1| predicted protein [Naegleria gruberi]
gi|284083770|gb|EFC37470.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 132/253 (52%), Gaps = 1/253 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
++ + L L+++ ++ D+G + S++ L L++G+N I + + + +L SL++
Sbjct: 123 ITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGVVGVKFINEMKHLTSLDI 182
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
GIGDEG+ +++ L L L+ ++ ++G G + +S + +L ++++ I R
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSINNNHIGAEGARF 242
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
++ + LKSL++ QI D G + + LT LD+ G I G + K L SLEI
Sbjct: 243 ISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLEI 302
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
G + D G K I ++ L LN+ N + + + IS + L SL + ++I G++
Sbjct: 303 GGNQIGDEGAKLISEMKQLISLNIYNN-QIGIEGAKFISEMKQLKSLYIGGNQIGDEGVK 361
Query: 490 HLKPLKNLRSLTL 502
+ +K L SL +
Sbjct: 362 FISEMKQLTSLDI 374
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 147/308 (47%), Gaps = 35/308 (11%)
Query: 160 LNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII- 217
+N+K+ + DS +K ++ + LKSL IS +++ D G ++ S + L S+ I
Sbjct: 106 VNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFI------SEMKQLTSLDIG 159
Query: 218 --RLFCLHV-FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
R+ + V F+ ++ LT L++ G + + S+S L L L+ N ++ D G +
Sbjct: 160 YNRIGVVGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSI 219
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ L +L++ N I E + + L+SL++ + IGDEG + + L L++S
Sbjct: 220 SEMKHLTLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS 279
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
++G G+ +S + L SL + QI D G +
Sbjct: 280 GNEIGVEGVIPIS------------------------EMKQLTSLEIGGNQIGDEGAKLI 315
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+ + L L+++ +I GA ++ K L+SL I G + D GVK I ++ LT L++
Sbjct: 316 SEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVKFISEMKQLTSLDIG 375
Query: 455 QNCNLTDK 462
N + DK
Sbjct: 376 YNEIVKDK 383
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 1/160 (0%)
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ ++ + L+S+++S I D + ++ + L SL++ +I G+ + + LT
Sbjct: 120 VKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGVVGVKFINEMKHLTS 179
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
LD+ G I D G + K L SL+ + D G K I ++ LTLL+++ N ++ +
Sbjct: 180 LDISGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSINNN-HIGAE 238
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
IS + L SL++ N++I G + + +K L SL +
Sbjct: 239 GARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDI 278
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 33/274 (12%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MK-LESLNIKWCNCITDSDM 173
N I +G K + + L LD+ RI G+V +K + MK L SL+I N I D +
Sbjct: 137 NRIGDEGAKFISEMKQLTSLDI-GYNRI--GVVGVKFINEMKHLTSLDIS-GNGIGDEGV 192
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S L L SL + +++ D G + + ++ LT
Sbjct: 193 KSISELKQLTSLDFNNNRIGDKGAKSI--------------------------SEMKHLT 226
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LL++ + A +S + L L++ Q+ D+G + +++ L L++ NEI E
Sbjct: 227 LLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVE 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
++ + + L SL + IGDEG ++ + L L + + Q+G G + +S + L+
Sbjct: 287 GVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLK 346
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
S+ + I D ++ ++ + L SL++ +I
Sbjct: 347 SLYIGGNQIGDEGVKFISEMKQLTSLDIGYNEIV 380
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA----------------- 415
++S+ +L R + + +T + L LD+ RI D GA
Sbjct: 102 MNSIVNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN 161
Query: 416 -------AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
++ K+L SL+I G G+ D GVK I +L LT L+ + N + DK + IS
Sbjct: 162 RIGVVGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSIS 220
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 521
+ L L+++N+ I + G R + +K L+SL++ + ++ N++K+L S D+
Sbjct: 221 EMKHLTLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS 279
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 29/281 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+D+S + + D G + + L SLD + +I G++ + + +LTSL N
Sbjct: 128 QLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN-RIGVVGVKFINEMKHLTSLDI-SGN 185
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G+K+ + L L LD G ++ + L L+I N I + +S
Sbjct: 186 GIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSIN-NNHIGAEGARFIS 244
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
+ LKSL I +++ D G F+ +++LT L++
Sbjct: 245 EMKQLKSLSIYNNQIGDEGAK--------------------------FINEMKQLTSLDI 278
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
G + + +S + L L + Q+ D+G + S++ L LN+ N+I E
Sbjct: 279 SGNEIGVEGVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKF 338
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+ + L+SL + IGDEG+ ++ + L L++ ++
Sbjct: 339 ISEMKQLKSLYIGGNQIGDEGVKFISEMKQLTSLDIGYNEI 379
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 29/235 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D G+ + + L SLDFN +I D G + + + +LT LS NN
Sbjct: 177 LTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSISEMKHLTLLSI-NNNH 234
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I A+G + + + L L + G + + +L SL+I N I + P+S
Sbjct: 235 IGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS-GNEIGVEGVIPISE 293
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+ L SL+I +++ D G L S + +L L+++ + +E
Sbjct: 294 MKQLTSLEIGGNQIGDEGAK-------------LISEMKQLISLNIYNNQ------IGIE 334
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
G A + + L SL+ + Q+ D+G + S++ L L++G+NEI +
Sbjct: 335 G----AKFISEMKQLKSLY---IGGNQIGDEGVKFISEMKQLTSLDIGYNEIVKD 382
>gi|290996041|ref|XP_002680591.1| predicted protein [Naegleria gruberi]
gi|284094212|gb|EFC47847.1| predicted protein [Naegleria gruberi]
Length = 281
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 126/276 (45%), Gaps = 26/276 (9%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+ LS L LK L I S + D G+ F++ L++L
Sbjct: 17 LNHLSELKQLKKLHIYDSYIGDEGVR--------------------------FISELKQL 50
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T L++ ++ LS L L +L +++ + G + S++ L +L + N I D
Sbjct: 51 TTLDIRNNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDD 110
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E +L L L LN+ IGDEG + L L L +++ Q+G+ G ++LS L +L
Sbjct: 111 EGAKYLSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHL 170
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+N+S I D + L L L L++ I D G+ L+ L LTHLD+ +I D
Sbjct: 171 ILLNISNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRD 230
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
G Y+ K + L I + D G K++ +++ L
Sbjct: 231 EGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQL 266
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 130/273 (47%), Gaps = 6/273 (2%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ SL KL + EG L+ LS L L L++ + D+G S++ L L++
Sbjct: 1 MKSLTKLKIRIKEG-----EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDI 55
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N I++ +L L L L +D IG +G ++ L L L + + G ++
Sbjct: 56 RNNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKY 115
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LS L L +N+ I D + + L L L ++ QI + G L+ L L L++
Sbjct: 116 LSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNI 175
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+I D GA YL K L L+I + D G+K++ L LT L++S N + D+ ++
Sbjct: 176 SNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYN-KIRDEGVK 234
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
IS L ++ L ++N+ I G ++L + L+
Sbjct: 235 YISELKEIMYLYINNNYIGDEGTKYLSEMNQLK 267
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 6/196 (3%)
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
E L +L+ L LK L + D+ +G G+R +S L L ++++ GIS+ + L+ L L
Sbjct: 15 EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQL 74
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
L +D I G ++ L LT L + I D GA YL K L L I + D
Sbjct: 75 TFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGD 134
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
G K+I +L LT L ++ N + ++ + +S L L+ LN+SN++I G ++L LK
Sbjct: 135 EGSKYIGELKQLTDLYINNN-QIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQ 193
Query: 497 LRSLTLESCKVTANDI 512
L L + SC NDI
Sbjct: 194 LMDLDI-SC----NDI 204
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 29/293 (9%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L HL + L+ L + I D G+ + L LT+L R NN I+ G K + L
Sbjct: 15 EALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIR-NNGISEYGAKYLSELK 72
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L +++ G + L +L L I N I D K LS L L L I ++
Sbjct: 73 QLTFLIIDKNNIGAKGSKYISELKQLTILIID-KNNIDDEGAKYLSELKQLTYLNIQDNR 131
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
+ D G Y+ L++LT L + + LS
Sbjct: 132 IGDEGSKYI--------------------------GELKQLTDLYINNNQIGNEGAKYLS 165
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L L LN++ Q+ D+G + ++ L L++ N+I DE + +L GL L L++
Sbjct: 166 ELKHLILLNISNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISY 225
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
I DEG+ ++ L + L +++ +G G ++LS + L+ N F D
Sbjct: 226 NKIRDEGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQLKDHNKDFQYKED 278
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 129/270 (47%), Gaps = 25/270 (9%)
Query: 143 RIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
RI G L +L L +L+ L+I + + I D ++ +S L L +L I + +++ G YL
Sbjct: 10 RIKEGEALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYL 68
Query: 201 KGLSISSVIFI-----------LCSMIIRLFCLHV-----------FLTSLQKLTLLNLE 238
L + + I S + +L L + +L+ L++LT LN++
Sbjct: 69 SELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ 128
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
+ + L L L +N Q+ ++G + S++ L +LN+ N+I DE +L
Sbjct: 129 DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYL 188
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
L L L++ IGDEG+ L+GL L L++S ++ G++++S L + + ++
Sbjct: 189 CELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYIN 248
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITD 388
I D + L+ ++ LK N D + D
Sbjct: 249 NNYIGDEGTKYLSEMNQLKDHNKDFQYKED 278
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 81/200 (40%), Gaps = 28/200 (14%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G ++L L LT L+ + +N I +G K L L L + + G L
Sbjct: 108 IDDEGAKYLSELKQLTYLNIQ-DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSE 166
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L L LNI N I D K L L L L ISC+ + D GI YL GL
Sbjct: 167 LKHLILLNIS-NNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGL---------- 215
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
++LT L++ + + +S L + YL +N + D+G +
Sbjct: 216 ----------------KQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNYIGDEGTKY 259
Query: 274 FSKIGSLKVLNLGFNEITDE 293
S++ LK N F DE
Sbjct: 260 LSEMNQLKDHNKDFQYKEDE 279
>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]
Length = 601
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 127/440 (28%), Positives = 216/440 (49%), Gaps = 42/440 (9%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ +++++ L + V+ +W+ + + L + L+ +V S + L S L
Sbjct: 65 LEVFQH-SVEEIDLSGHIAVDAEWLAYLGA-FRYLRVLKLADCKNVNSSAVWALSGMSTL 122
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 123 KELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVRF 181
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY-LKG 202
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT I L+
Sbjct: 182 TDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILLTLRC 240
Query: 203 LSISS-VIFILCS----MIIRLFCLHVFLTSL------------QKLTLLNLEGCPVTAA 245
L++S+ I +C+ ++I L L + S LT L++ C +++
Sbjct: 241 LNMSNCTIHSICNGEFQVLIHLEKLVISAASFGNIDEVFSSILPSSLTYLDMSSC--SSS 298
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG-LTN 303
L L + +L +L+L+ ++ D E + IG +L L+L +E+T + L L G + +
Sbjct: 299 NLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGTVPS 358
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT---------QVGSSGLRHLSGLTNLES 354
L +L+L I D L+ ++ + +L+ L LS T V L L L LES
Sbjct: 359 LTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLES 418
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+NL+ T + D + LA +LK L L + ++D L AL+S + L HL G ++ +G
Sbjct: 419 LNLNNTQLMDDVIPPLASFRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNILSTTG 478
Query: 415 AAYLRNF---KNLRSLEICG 431
LR F LR L++ G
Sbjct: 479 ---LRKFVPPATLRMLDLSG 495
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 343
G + E L +L L L L C + + L+G+ LK L+LS +++ +G+
Sbjct: 79 GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGI 138
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+H++ + +LE +++S TG++D + ++ L +L+ L+L + TD L +L LT L HL
Sbjct: 139 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 198
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
D++G+ IT+ GA+ L F +L L I +T
Sbjct: 199 DIWGSEITNEGASVLIAFTSLSFLNISWTRVT 230
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 168/355 (47%), Gaps = 56/355 (15%)
Query: 224 VFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLK 281
+L + + L +L L C V ++ + +LS + +L L+L+RC ++SD G + + I SL+
Sbjct: 89 AYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGIKHIASIESLE 148
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L++ +TD ++ + L NL L+L D+ L +L L L+ L++ +++ +
Sbjct: 149 KLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIWGSEITNE 208
Query: 342 GLRHLSGLTNLESINLSFTGIS----------------------DGSLRKLAGLSSLKSL 379
G L T+L +N+S+T ++ +G + L L L
Sbjct: 209 GASVLIAFTSLSFLNISWTRVTCLPILLTLRCLNMSNCTIHSICNGEFQVLIHLEKLVIS 268
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
I + + L S LT+LD+ + + S +L N +NL L++ + +
Sbjct: 269 AASFGNIDEVFSSILPS--SLTYLDM--SSCSSSNLYFLGNMRNLEHLDLSYSRIISDAI 324
Query: 440 KHIKDLS-SLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNL 497
++I ++ +L L+LS N +T + L +++G + L +L++++++I + L ++ + +L
Sbjct: 325 EYIANIGMNLMFLSLS-NSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYISMMPSL 383
Query: 498 RSLTLE-----------SCKVTA----NDIKRLQSRDL----------PNLVSFR 527
R L L S KV + ++K L+S +L P L SFR
Sbjct: 384 RILNLSRTCIKGFMMENSVKVLSLSALEELKYLESLNLNNTQLMDDVIPPLASFR 438
>gi|46445682|ref|YP_007047.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399323|emb|CAF22772.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 531
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 132/264 (50%), Gaps = 43/264 (16%)
Query: 281 KVLNLGFNEI-----------TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 328
K+LN NEI TD L+ LK NL++L+L +C + D+GL +LT L NL
Sbjct: 289 KILNYFSNEIEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNL 348
Query: 329 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
+ L LS ++ + GL H L L+ +NLS IT
Sbjct: 349 QYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAF-----------------------IT 385
Query: 388 DTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 445
D GLA L L L +L+L G A ITD+G A+L+ L+ L + G +TDAG+ H+ L
Sbjct: 386 DAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPL 445
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLES 504
+L L+LS +LT+ LE ++ L L LN+S +T AGL HL L NL+ L L
Sbjct: 446 VTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNH 505
Query: 505 CKVTAN-DIKRLQSRDL---PNLV 524
C+ A+ K R L PNL+
Sbjct: 506 CEHFADVRFKLTHFRTLLANPNLI 529
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 6/220 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK+C NL++L C ++D GL L L+NL L+ + +T +G+
Sbjct: 305 ENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGL 364
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F LI L L+L C I GL +LK L+ L+ LN+ C ITD+ + L L L+
Sbjct: 365 AHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQ 424
Query: 184 SLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
L +S C+ +TD+G+A+L L ++ + C+ + L SL L LNL GC
Sbjct: 425 YLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLER--LASLVALQHLNLSGCI 482
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
+T A L L++L +L LNLN C+ D K + +L
Sbjct: 483 YLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTL 522
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 127/263 (48%), Gaps = 31/263 (11%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 280
L+ F ++KL E +T A L +L +L L+L C L+DDG + + +L
Sbjct: 291 LNYFSNEIEKLNFS--ENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNL 348
Query: 281 KVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQ 337
+ LNL +++T++ L H K L L+ LNL C I D GL +L L L+ L LS
Sbjct: 349 QYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAF 408
Query: 338 VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT 395
+ +GL HL L L+ +NLS I+D L L L +LK L+L +T+ GL L
Sbjct: 409 ITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLA 468
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
SL L HL+L SG YL T+AG+ H+ L++L LNL+
Sbjct: 469 SLVALQHLNL-------SGCIYL----------------TEAGLTHLTSLTNLQQLNLNH 505
Query: 456 NCNLTDKTLELISGLTGLVSLNV 478
+ D +L T L + N+
Sbjct: 506 CEHFADVRFKLTHFRTLLANPNL 528
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++LSG + +TD+GL HLK LQ L+ + C I+D GL HL L L L
Sbjct: 397 ALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWC 456
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N++T G++ A L+ L L+L C + GL +L L L+ LN+ C D K
Sbjct: 457 NSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFK- 515
Query: 176 LSGLTNLKSL 185
LT+ ++L
Sbjct: 516 ---LTHFRTL 522
>gi|335058613|gb|AEH26502.1| leucine-rich repeat domain protein [uncultured Acidobacteria
bacterium A11]
Length = 402
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 118/248 (47%), Gaps = 2/248 (0%)
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
A LD L+ L L L+L ++ G + + +L+ LNL +TD L HL GLTNL
Sbjct: 146 AWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNL 205
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L+L S EG L L L+ T V +GL +S +T LE + + +D
Sbjct: 206 RVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTD 265
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
LA L +L+ L + +R T + LT+LT L LDL + T G + +L
Sbjct: 266 AGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSL 325
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
R L I G + D G I LS+L +L ++ N LTD L+ + L L L + ++IT
Sbjct: 326 RVLRIH-GQIKDEGAASIAQLSNLEIL-VANNAGLTDDALDHFARLPRLQRLEIKGNKIT 383
Query: 485 SAGLRHLK 492
L L+
Sbjct: 384 DPALARLQ 391
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 28/283 (9%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S++RN+ + + A L +L+ LDL GL + L LE LN+ +TD+
Sbjct: 136 SYKRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLT-LTPVTDA 194
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
++ L+GLTNL+ L ++ +K T G FL L++
Sbjct: 195 HLEHLAGLTNLRVLSLASAKCTGEGFR--------------------------FLGKLKQ 228
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L N PV A L +S + L L + C +D G +K+ +L+ L +G + T
Sbjct: 229 LENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDAT 288
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+ L LT L L+L EG+ + + + +L+ L + Q+ G ++ L+N
Sbjct: 289 GAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSLRVLRIH-GQIKDEGAASIAQLSN 347
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
LE + + G++D +L A L L+ L + +ITD LA L
Sbjct: 348 LEILVANNAGLTDDALDHFARLPRLQRLEIKGNKITDPALARL 390
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 162/369 (43%), Gaps = 44/369 (11%)
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
DS +A G S S+ L + +R F+ +L++ +L + AA + +A
Sbjct: 42 DSDLALRLGQSWRSIRDPLLRIKVR-----EFIPALERAAVLRPRLAEIAAA---TKTAK 93
Query: 254 GSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNE------------ITDECLVHLKG 300
G++ + LSD G E + L ++L + + D L L
Sbjct: 94 GTVAFEPGAPQWLSDLVGAESLHLLDRLTAIDLNDRQSPHDKSYKRNDTLVDAWLDRLAD 153
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L +L SL+L + G+ GL + L NL+ L L+ T V + L HL+GLTNL ++L+
Sbjct: 154 LPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNLRVLSLASA 213
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+ R L L L++ N + D GLA ++++TGL L++ TD+GA +L
Sbjct: 214 KCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTDAGAPHLAK 273
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC----------------------N 458
NL L+I T A ++ + L+ L L+L N
Sbjct: 274 LVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSLRVLRIHGQ 333
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
+ D+ I+ L+ L L +N+ +T L H L L+ L ++ K+T + RLQ +
Sbjct: 334 IKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLEIKGNKITDPALARLQ-Q 392
Query: 519 DLPNLVSFR 527
LP L R
Sbjct: 393 ALPALEVVR 401
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 118/277 (42%), Gaps = 31/277 (11%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D W+D +A L+S+DL+ + V GL + NL+ L+ ++D LEHL GL
Sbjct: 145 DAWLDRLADL-PDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLT-PVTDAHLEHLAGL 202
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+NL LS + T +G + L L + GL + + LE L I C
Sbjct: 203 TNLRVLSL-ASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHC 261
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
+ TD+ L+ L NL+ LQI T + I
Sbjct: 262 H-FTDAGAPHLAKLVNLERLQIGSRDATGAAIEP-------------------------- 294
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LT+L KL L+L+ TA + S + SL L ++ Q+ D+G +++ +L++L
Sbjct: 295 LTALTKLRELDLQDNQATAEGVRHASRIPSLRVLRIH-GQIKDEGAASIAQLSNLEILVA 353
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
+TD+ L H L L+ L + I D L L
Sbjct: 354 NNAGLTDDALDHFARLPRLQRLEIKGNKITDPALARL 390
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 24/157 (15%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ V D+GL + + L+ L+ C +D G HL L NL L +A T ++
Sbjct: 237 TPVNDAGLAGISTVTGLERLEIVHC-HFTDAGAPHLAKLVNLERLQIGSRDA-TGAAIEP 294
Query: 127 FAGLINLVKLDLE------------------RCTRIHGGLVN--LKGLMKLESLNIKWCN 166
L L +LDL+ R RIHG + + + +L +L I N
Sbjct: 295 LTALTKLRELDLQDNQATAEGVRHASRIPSLRVLRIHGQIKDEGAASIAQLSNLEILVAN 354
Query: 167 --CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+TD + + L L+ L+I +K+TD +A L+
Sbjct: 355 NAGLTDDALDHFARLPRLQRLEIKGNKITDPALARLQ 391
>gi|215769345|dbj|BAH01574.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 186/378 (49%), Gaps = 33/378 (8%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 4 LKELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVR 62
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLK 201
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT I L+
Sbjct: 63 FTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLR 121
Query: 202 GLSISS------------VIFILCSMIIRLFCL----HVFLTSLQK-LTLLNLEGCPVTA 244
L++S+ V+ L +II VF + L LT L++ C ++
Sbjct: 122 CLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMSSC--SS 179
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG-LT 302
+ L L + +L +L+L+ ++ D E + IG +LK L+L +E+T + L L G +
Sbjct: 180 SNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVP 239
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT---------QVGSSGLRHLSGLTNLE 353
+L +L+L I D L+ ++ + +L+ L LS T V L L L LE
Sbjct: 240 SLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLE 299
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
S+NL+ T + D + LA L +LK L L + ++D L AL+S + L HL G ++ +
Sbjct: 300 SLNLNNTQLMDDVIPPLASLRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNILSTT 359
Query: 414 GAAYLRNFKNLRSLEICG 431
G LR L++ G
Sbjct: 360 GLRKFVPPATLRMLDLSG 377
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 80/133 (60%), Gaps = 7/133 (5%)
Query: 328 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
LK L+LS +++ +G++H++ + +LE +++S TG++D + ++ L +L+ L+L +
Sbjct: 4 LKELDLSRCSKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRF 63
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
TD L +L LT L HLD++G+ IT+ GA+ L F +L L I +T + L
Sbjct: 64 TDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPI-----LP 118
Query: 447 SLTLLNLSQNCNL 459
+L LN+S NC +
Sbjct: 119 TLRCLNMS-NCTI 130
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 143/277 (51%), Gaps = 10/277 (3%)
Query: 229 LQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
++ L L+L C ++ A + ++++ SL L++++ L+D+G S + +L++L+LG
Sbjct: 1 MRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGG 60
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
TD+ L L+ LT LE L++ I +EG L +L L +S T+V + L L
Sbjct: 61 VRFTDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRV--TCLPILP 118
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L L N + I +G + L L L I + + L S LT+LD+
Sbjct: 119 TLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPS--SLTYLDM-- 174
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKTLEL 466
+ + S +L N +NL L++ + +++I ++ +L L+LS N +T + L +
Sbjct: 175 SSCSSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLS-NSEVTSQALCV 233
Query: 467 ISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
++G + L +L++++++I + L ++ + +LR L L
Sbjct: 234 LAGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNL 270
>gi|46447466|ref|YP_008831.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401107|emb|CAF24556.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 456
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 352 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA- 408
+E++N S ++D L L +LK L+L + TD GLA LT LT L HLDL G
Sbjct: 225 IEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCF 284
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
R+TD+G A+L L+ L + G LTDAG+ H+K L +L L+L + NLTD L +
Sbjct: 285 RVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLR 344
Query: 469 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 517
L L LN++N IT GL HL PL L+ L L C K+T N + RL+S
Sbjct: 345 PLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 120/219 (54%), Gaps = 7/219 (3%)
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T A L +L +L L+L C +D G + + +L+ L+L G +TD L HL
Sbjct: 236 LTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGLAHLS 295
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
L L+ LNL C + D GLV+L L LK L+L + +GL HL L L+ +NL+
Sbjct: 296 PLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLT 355
Query: 359 F-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 415
I+D L L L +LK L+L ++T GLA L SL L HL+L G + +TD+G
Sbjct: 356 NCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGL 415
Query: 416 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 453
A+LR L+ L++ LTDAG+ H K L++ T L+L
Sbjct: 416 AHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 298 LKGLTN-LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 354
LK +N +E+LN ++ + D L+ L NLK L+L + +GL HL+ LT L+
Sbjct: 218 LKYFSNEIEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQH 277
Query: 355 INLSFTG---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARI 410
++L TG ++D L L+ L +L+ LNL +TD GL L L L HLDL +
Sbjct: 278 LDL--TGCFRVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNL 335
Query: 411 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
TD+G A+LR L+ L + +TD G+ H+ L +L L+L Q LT L +
Sbjct: 336 TDAGLAHLRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395
Query: 470 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
L L LN+S S +T AGL HL+PL L+ L L +C
Sbjct: 396 LVALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANC 432
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L G D+TD+GL+HLK L+ LD C ++D GL HLR L L L+
Sbjct: 299 ALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLTNCE 358
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+ L+ L LDL +C ++ G GL L+ L+ L+ LN+ C+ +TD+ + L
Sbjct: 359 NITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGLAHL 418
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISS 207
L L+ L ++ C ++TD+G+A+ K L+ ++
Sbjct: 419 RPLVALQHLDLANCYELTDAGLAHFKFLAATT 450
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 115/224 (51%), Gaps = 8/224 (3%)
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEG 318
N L+D +LKVL+L +N TD L HL LT L+ L+L C + D G
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWN-FTDAGLAHLTPLTALQHLDLTGCFRVTDTG 290
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 377
L +L+ L L+ L L + +GL HL L L+ ++L ++D L L L +L+
Sbjct: 291 LAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQ 350
Query: 378 SLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGL 434
LNL + ITD GLA LT L L HLDL ++T +G A LR+ L+ L + G L
Sbjct: 351 HLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYL 410
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
TDAG+ H++ L +L L+L+ LTD L L L++
Sbjct: 411 TDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +D+TD+ L+ LK+C NL+ LD C +D GL HL L+ L L +T G+
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGL 291
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ L+ L L+L C GLV+LK L+ L+ L++ C +TD+ + L L L+
Sbjct: 292 AHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQH 351
Query: 185 LQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMII-----RLFCLHVFLTSLQKLTLLNL 237
L ++ C +TD G+A+L L ++ + + C + R L SL L LNL
Sbjct: 352 LNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLAR-------LRSLVALQHLNL 404
Query: 238 EGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 287
GC +T A L L L +L +L+L C +L+D G F + + L+L +
Sbjct: 405 SGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDLRW 456
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+L ++LSG S +TD+GL HL+ LQ LD C +++D GL H + L+ T L R
Sbjct: 398 ALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDLR 455
>gi|421897032|ref|ZP_16327415.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
gi|206588197|emb|CAQ18765.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
Length = 625
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 151/505 (29%), Positives = 222/505 (43%), Gaps = 61/505 (12%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQ 55
PR +++ EL SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 103 PRRAMREVNRELRNASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 160 PPGVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKW 164
+I + A A ++ LDL VN+ G L SLN+
Sbjct: 218 LT-GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLLSLNLH- 266
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
N I D L+ LKSL S + + D+G+ G + ++V
Sbjct: 267 NNGIGDEGALALATSGTLKSLNASNNGIGDAGVL---GFADNTV---------------- 307
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
LT LNL G + A +L SL L+L+ +L D G + + SL LN
Sbjct: 308 -------LTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLN 360
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L NEI D+ L T L+SLNL IG G L G L+ L+L + G
Sbjct: 361 LRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGAS 420
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L+ T+L S++L I D R LA +L L+L I D G AL LT L+
Sbjct: 421 ALARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLN 480
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L+G + D GAA L L SL + + G +H+ ++LT L+LS+N + +
Sbjct: 481 LYGNEVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGA 539
Query: 465 ELISGLTGLVSLNVSNSRITSAGLR 489
E +S T L +LNVS + I G R
Sbjct: 540 EALSLSTVLTTLNVSGNAIGEKGAR 564
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 127/433 (29%), Positives = 181/433 (41%), Gaps = 59/433 (13%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL LTS+ F+ +T + +KA + LD+ RCT G V+ GL L +
Sbjct: 135 HLGKYPALTSVRFK--GELTLEALKALP--PGVEHLDISRCT---GRGVSNAGLAHLAT- 186
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LSISSVIFILCSMIIRL 219
+PL KSL ++ ++ G L S++S+ CS+ R
Sbjct: 187 -------------RPL------KSLSLNGIEIDAEGARLLATCASLTSLSLTGCSIGDRA 227
Query: 220 FCLHVFLTSLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
S+ L L +N+ G P A L S L LNL+ + D+G + G
Sbjct: 228 ATALAQSRSIASLDLSVNMIG-PDGARALAS----APLLSLNLHNNGIGDEGALALATSG 282
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+LK LN N I D ++ T L LNL IG G L +L L+LS ++
Sbjct: 283 TLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTELDLSTNRL 342
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G +G + L+G +L S+NL I D LA ++LKSLNL I G AL T
Sbjct: 343 GDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGST 402
Query: 399 GLTHLDL-------FGA-----------------RITDSGAAYLRNFKNLRSLEICGGGL 434
L LDL +GA RI D GA L + L L++ +
Sbjct: 403 TLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATSRTLTLLDLSRNNI 462
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
DAG + + SLT LNL N + D ++ L SLN+ +RI G +HL
Sbjct: 463 HDAGAQALAGNGSLTSLNLYGN-EVDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKS 521
Query: 495 KNLRSLTLESCKV 507
L L L ++
Sbjct: 522 ATLTELDLSENRI 534
>gi|290981696|ref|XP_002673566.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087150|gb|EFC40822.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 411
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 166/349 (47%), Gaps = 35/349 (10%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS + NN +G F I +K+D E T + + L+ + +L L++++ N TD
Sbjct: 74 LSLKCNNDDKLKGQ--FLQNIETLKVDRESLTIMFDCKI-LEFMKQLTDLDVQYNNLGTD 130
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
++K +S L L++L IS + + G Y+ LS
Sbjct: 131 -EVKYISQLKQLRNLDISINNIDKEGAKYISQLS-------------------------- 163
Query: 231 KLTLLNLEG---CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+LT LN+ G C T +S++ L YL++++ ++ D+G + S++ L L +
Sbjct: 164 QLTKLNISGNCYCIGTEGA-KHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYILT 222
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N I DE H+ G+ L L++ IG EG+ +++ + L L +++ ++G G ++L
Sbjct: 223 NNIGDEGAKHISGMNQLTELDISFNLIGIEGVRHISSMKQLTSLSINNAKIGD-GAKYLG 281
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
++ L ++N+ I ++++ L LK L + Q+ G ++ + L L + G
Sbjct: 282 AMSQLTNLNIFSCNIESNGAKQISALQQLKFLGIGYNQLGHEGAKNISEMKQLDSLYICG 341
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
I + GA ++ K L +L IC + D G K I SLT+L++ N
Sbjct: 342 NDIGERGAKHISGMKRLTTLNICENNIGDNGAKFISQSKSLTILSIYSN 390
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L + L +++ + + ++ ++ L L++L++ I G ++ L+ LT L++
Sbjct: 111 LEFMKQLTDLDVQYNNLGTDEVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNI 170
Query: 406 FG--ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
G I GA ++ + K L L+I + D G K I +L LT L + N N+ D+
Sbjct: 171 SGNCYCIGTEGAKHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYILTN-NIGDEG 229
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+ ISG+ L L++S + I G+RH+ +K L SL++ + K+
Sbjct: 230 AKHISGMNQLTELDISFNLIGIEGVRHISSMKQLTSLSINNAKI 273
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 130/314 (41%), Gaps = 56/314 (17%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
DK SQ S L +++SG+ + G H+ L LD + +I D G + +
Sbjct: 152 DKEGAKYISQLSQLTKLNISGNCYCIGTEGAKHISSMKQLTYLDISKN-EIGDEGAKSIS 210
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L LTSL NN I +G K +G+ L +LD I L+ ++G+
Sbjct: 211 ELKQLTSLYILTNN-IGDEGAKHISGMNQLTELD------ISFNLIGIEGV--------- 254
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ +S + L SL I+ +K+ D G YL +S
Sbjct: 255 ----------RHISSMKQLTSLSINNAKIGD-GAKYLGAMS------------------- 284
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+LT LN+ C + + +SAL L +L + QL +G + S++ L L
Sbjct: 285 -------QLTNLNIFSCNIESNGAKQISALQQLKFLGIGYNQLGHEGAKNISEMKQLDSL 337
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+ N+I + H+ G+ L +LN+ IGD G ++ +L L + + G
Sbjct: 338 YICGNDIGERGAKHISGMKRLTTLNICENNIGDNGAKFISQSKSLTILSIYSNDISQVGE 397
Query: 344 RHLSGLTNLESINL 357
+ L + LE +++
Sbjct: 398 KFLQRMKQLERLDI 411
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 369 KLAG--LSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
KL G L ++++L +D +T L + LT LD+ + Y+ K LR
Sbjct: 83 KLKGQFLQNIETLKVDRESLTIMFDCKILEFMKQLTDLDVQYNNLGTDEVKYISQLKQLR 142
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRIT 484
+L+I + G K+I LS LT LN+S NC + + + IS + L L++S + I
Sbjct: 143 NLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGAKHISSMKQLTYLDISKNEIG 202
Query: 485 SAGLRHLKPLKNLRSLTL 502
G + + LK L SL +
Sbjct: 203 DEGAKSISELKQLTSLYI 220
>gi|290983896|ref|XP_002674664.1| predicted protein [Naegleria gruberi]
gi|284088255|gb|EFC41920.1| predicted protein [Naegleria gruberi]
Length = 374
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 145/302 (48%), Gaps = 3/302 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+L SL +L L++ +T + ++ +S L L YLN++ + + G SK+ L L
Sbjct: 51 YLISLDQLISLDISKSLITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLV 110
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N CL ++ + L SLN++ IG+ ++ + L L +++ +G G
Sbjct: 111 ISKNRFGMNCLKYITNMRKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAF 170
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
H+ L +L S+ ++ GI + ++ + L + L++ G + + LT L+
Sbjct: 171 HVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLN 230
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ RI D GA YL L L I ++ GVK I++L LT L++S N N+ +
Sbjct: 231 INSCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFIRELKLLTFLDISIN-NIGQQGS 289
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
+ +SGL L L++ + + G RH+ +K L +L + ++ D L DL L
Sbjct: 290 QYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWLTNLDINCNSIS--DEGALYFSDLKQLT 347
Query: 525 SF 526
SF
Sbjct: 348 SF 349
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 133/293 (45%), Gaps = 26/293 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
ITDS ++P+S L L L +S + + + G+ ++ L ++ + CL ++T
Sbjct: 68 ITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLE-QLTNLVISKNRFGMNCLK-YIT 125
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+++KLT LN+ G + + + + L LN+N + D G K+ L L +
Sbjct: 126 NMRKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAK 185
Query: 288 NEITDECL------------------------VHLKGLTNLESLNLDSCGIGDEGLVNLT 323
N I +E + ++ + L LN++SC IGDEG L+
Sbjct: 186 NGIHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLS 245
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
GL L L +S + + G++ + L L +++S I + ++GL L L++
Sbjct: 246 GLTKLTKLSISSNSISAIGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHR 305
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ D G + + LT+LD+ I+D GA Y + K L S +I G + D
Sbjct: 306 NNLGDEGARHIGDMKWLTNLDINCNSISDEGALYFSDLKQLTSFDISGNNICD 358
>gi|296123881|ref|YP_003631659.1| serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
gi|296016221|gb|ADG69460.1| Serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
Length = 1655
Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats.
Identities = 144/577 (24%), Positives = 230/577 (39%), Gaps = 112/577 (19%)
Query: 18 RCLTE-VSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
R +TE V+ A D A L Q V W++ ++ SL + + S V +G I
Sbjct: 1096 RLMTENVNPSAGSDHAATRYVLNQQGSV---WINGESTARQSLSVAEFANS-VQLTG-IE 1150
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
++ +L + DF D LE +R L F ++I+ +K L L L
Sbjct: 1151 FRNKRDLDAKDFEVFSGCRD--LEKVR-------LGF---SSISDAHLKPLENLPKLTHL 1198
Query: 137 DLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL------------------- 176
+L +C ++ G + K L LE+ W + D D+ PL
Sbjct: 1199 ELSQCEKVTGAAIRKFKHLTHLEA----WAVPVGDDDLAPLKDNPFRNLDLGGTRITGKA 1254
Query: 177 ----SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI----IRLFCLHVFLTS 228
+ L++L+S +++ + + + +A LK + + + + I +R C
Sbjct: 1255 LAAFTNLSDLRSSRLAFTSIKNKDLAALKDCHRLTFLALYNTGIGDEGVREIC------E 1308
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK----------IG 278
L+ L L L+G VT L L L ++L Q++ + E F K G
Sbjct: 1309 LKALRSLELQGSKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESFRKQKPLCEVKCDAG 1368
Query: 279 SLKVLNLGFNEITDEC--------LVHLKG----LTNLESLNLDSCGIGDEGLVNLTGLC 326
L +E+ V +G L N + I L LTG+
Sbjct: 1369 VLPRWEPNGDELVKNAKADRAAAAFVLKQGKYVWLDNAKDPLHGDPAILPPHLFKLTGIS 1428
Query: 327 --NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
LK L D ++ G NL + L GI+D LR G +S+ L LD +
Sbjct: 1429 LEGLKTLTPRDFEI-------FKGCQNLSDLQLLNMGITDEHLRAFEGTTSITKLKLDGQ 1481
Query: 385 QITDTGLAALTSLTGLT-----------------------HLDLFGARITDSGAAYLRNF 421
+T GL+ + LT +L+L G RITD+ A +
Sbjct: 1482 AVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSIASPDYTYLNLGGTRITDASIAAFESL 1541
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
+NL + GLTD G++H+ +LT L L+ LTD + ++ L L L +SN+
Sbjct: 1542 QNLEMATLNFTGLTDEGIEHLASAENLTYLGLNHT-RLTDASAKVFLKLNQLEELTLSNT 1600
Query: 482 RITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQS 517
+ + GL L L NL+ L L KVTA+ + + QS
Sbjct: 1601 QFSDQGLLLLVNALPNLKRLNLLETKVTADSVDKFQS 1637
Score = 74.3 bits (181), Expect = 1e-10, Method: Composition-based stats.
Identities = 95/390 (24%), Positives = 151/390 (38%), Gaps = 47/390 (12%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L A +DC G+ D+ + I + +L S++L GS VT+ +L +L
Sbjct: 1279 LAALKDCHRLTFLALYNTGIGDEGVREIC-ELKALRSLELQGSKVTNEVFFYLMKLPHLL 1337
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSL---------------SFRRNNAITAQGMKAFAG 129
S+D + Q++ +E R L + +N
Sbjct: 1338 SVDLRY-TQVTPEAIESFRKQKPLCEVKCDAGVLPRWEPNGDELVKNAKADRAAAAFVLK 1396
Query: 130 LINLVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
V LD + +HG L L KL ++++ +T D + G NL LQ+
Sbjct: 1397 QGKYVWLDNAK-DPLHGDPAILPPHLFKLTGISLEGLKTLTPRDFEIFKGCQNLSDLQLL 1455
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+TD + +G + +T L L+G VT+ L
Sbjct: 1456 NMGITDEHLRAFEGTT--------------------------SITKLKLDGQAVTSKGLS 1489
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
S L +L++ Q D + + LNLG ITD + + L NLE
Sbjct: 1490 YFSGCKRLTFLSVWATQADDKFIQSIAS-PDYTYLNLGGTRITDASIAAFESLQNLEMAT 1548
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSL 367
L+ G+ DEG+ +L NL L L+ T++ + + L LE + LS T SD G L
Sbjct: 1549 LNFTGLTDEGIEHLASAENLTYLGLNHTRLTDASAKVFLKLNQLEELTLSNTQFSDQGLL 1608
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSL 397
+ L +LK LNL ++T + SL
Sbjct: 1609 LLVNALPNLKRLNLLETKVTADSVDKFQSL 1638
Score = 66.2 bits (160), Expect = 4e-08, Method: Composition-based stats.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 320 VNLTGL--CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
V LTG+ N + L+ D +V SG +LE + L F+ ISD L+ L L L
Sbjct: 1144 VQLTGIEFRNKRDLDAKDFEV-------FSGCRDLEKVRLGFSSISDAHLKPLENLPKLT 1196
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L L Q AA+ LTHL+ + + D A L++ R+L++ G +T
Sbjct: 1197 HLELS--QCEKVTGAAIRKFKHLTHLEAWAVPVGDDDLAPLKD-NPFRNLDLGGTRITGK 1253
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
+ +LS L L+ ++ +K L + L L + N+ I G+R + LK L
Sbjct: 1254 ALAAFTNLSDLRSSRLAFT-SIKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKAL 1312
Query: 498 RSLTLESCKVTANDIKRLQSRDLPNLVS 525
RSL L+ KVT L LP+L+S
Sbjct: 1313 RSLELQGSKVTNEVFFYLMK--LPHLLS 1338
>gi|149173873|ref|ZP_01852502.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
gi|148847403|gb|EDL61737.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
Length = 473
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 171/404 (42%), Gaps = 44/404 (10%)
Query: 117 NAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N A G F+ + D L TR+ G L + ++ N + + K
Sbjct: 72 NKPEAGGGYYFSNYFDYCSEDELPMLTRVEG----------LRAFDMFDGNSFSPAGWKQ 121
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ ++ L++ +SC VTD + L+GL L+ L +L
Sbjct: 122 IGQISGLEAFNVSCQYVTDEHLMGLQGLP-----------------------QLKDLKIL 158
Query: 236 N--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
N ++ PV+ L LS+ +L L L+ +++ GCE L+ L L + ITDE
Sbjct: 159 NNCMKQSPVSDQGLQVLSSFPALRRLVLHSREINVRGCELIGDCTELRALEL-WGPITDE 217
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
CL L L NL+ L + D GL +L+GL L L L Q+ SGL + L
Sbjct: 218 CLKPLGKLKNLKHLIVVGT-FSDAGLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELR 276
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
S + + +L++L L L LNL + D L + L L L L + ITD
Sbjct: 277 EFGFSGSPAGNATLKQLDQLPGLAVLNLSTPSVNDAVLQTMPDLPQLEALSLKNSNITDK 336
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN---LTDKTLELISGL 470
G L KNLR L + +T+AG+ ++ L L LL L + +T K LE L
Sbjct: 337 GLDALVKVKNLRELVLYSTEITNAGLIRLEPLQQLRLLVLGNPGHTELITGKGLE---SL 393
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
T L L V + +A L+PL SL ++D+++
Sbjct: 394 TKLSRLEVLDIDYVNAEQLDLRPLARCSSLVEVILNFGSDDVRK 437
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 8/257 (3%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN-LDSC----GIGDEGLV 320
S G ++ +I L+ N+ +TDE L+ L+GL L+ L L++C + D+GL
Sbjct: 114 FSPAGWKQIGQISGLEAFNVSCQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQ 173
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L+ L+ L L ++ G + T L ++ L + I+D L+ L L +LK L
Sbjct: 174 VLSSFPALRRLVLHSREINVRGCELIGDCTELRALEL-WGPITDECLKPLGKLKNLKHL- 231
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
+ +D GL L+ L LT L L ++T SG LR G +A +K
Sbjct: 232 IVVGTFSDAGLKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLK 291
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ L L +LNLS ++ D L+ + L L +L++ NS IT GL L +KNLR L
Sbjct: 292 QLDQLPGLAVLNLS-TPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLREL 350
Query: 501 TLESCKVTANDIKRLQS 517
L S ++T + RL+
Sbjct: 351 VLYSTEITNAGLIRLEP 367
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 133/299 (44%), Gaps = 45/299 (15%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L +D + + C+ Q P V+D+ + V++S +L + L ++ G + DC+ L+
Sbjct: 149 LPQLKDLKILNNCMKQSP-VSDQGLQVLSS-FPALRRLVLHSREINVRGCELIGDCTELR 206
Query: 85 SLDF-----NFCIQ----------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+L+ + C++ SD GL+HL GL LT L ++ +T G
Sbjct: 207 ALELWGPITDECLKPLGKLKNLKHLIVVGTFSDAGLKHLSGLKQLTRLVL-HSDQMTGSG 265
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ +FA L + + L L L L LN+ + D+ ++ + L L+
Sbjct: 266 LNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLAVLNLS-TPSVNDAVLQTMPDLPQLE 324
Query: 184 SLQISCSKVTDSGI-AYLKGLSISSVIF----ILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+L + S +TD G+ A +K ++ ++ I + +IR L LQ+L LL L
Sbjct: 325 ALSLKNSNITDKGLDALVKVKNLRELVLYSTEITNAGLIR-------LEPLQQLRLLVL- 376
Query: 239 GCP-----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL--KVLNLGFNEI 290
G P +T L+SL+ L L L+++ ++ SL +LN G +++
Sbjct: 377 GNPGHTELITGKGLESLTKLSRLEVLDIDYVNAEQLDLRPLARCSSLVEVILNFGSDDV 435
>gi|344174745|emb|CCA86555.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
syzygii R24]
Length = 468
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 177/375 (47%), Gaps = 17/375 (4%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 76 LKELDLSRCR----GPITAAGIAHLSRLPLVRLNVRDKRIGAEGARRLANHPTLTSLDVS 131
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLE--GCPVTAA 245
++ G + L+ ++ + L R+ L + + LT L++ G A
Sbjct: 132 NGRIGPEGA---RALADNTKLTTLSVSHNRIGAEGAKALAASKTLTSLDISENGIGNEGA 188
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
C +L+ L LN+NR Q+ +G + + +L L++G N+I DE + L L
Sbjct: 189 C--ALATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLT 246
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+LN++ +G +G+ L L L + +G +G R L+ T+L ++++ GIS
Sbjct: 247 TLNVERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPA 306
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
+ LA ++L +LNL I D G A ++ T L L + + ++D+GA L K L
Sbjct: 307 GAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKTLT 366
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
+L+ + DAG + + +LT L++ N + + ++ T L SL++ N+R+T
Sbjct: 367 TLDAGDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTRLASLDLRNNRVTK 425
Query: 486 AGLRHLKPLKNLRSL 500
AG+R L + L SL
Sbjct: 426 AGVRALLANRTLSSL 440
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 199/441 (45%), Gaps = 31/441 (7%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLKGLMKLESL-NIKWCNCITD 170
RR+ + Q ++A + L V+ D+ + R GL +K +L + TD
Sbjct: 7 RRSKPLAVQRLRAASKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLALIGPFTD 66
Query: 171 SDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLSISSVIFI---LCSMIIRLFCLHVF 225
+D+ L +LK L +S C +T +GIA+L L + + + + R H
Sbjct: 67 NDLGGLPA--SLKELDLSRCRGPITAAGIAHLSRLPLVRLNVRDKRIGAEGARRLANHPT 124
Query: 226 LTSLQ------------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
LTSL KLT L++ + A +L+A +L L+++ +
Sbjct: 125 LTSLDVSNGRIGPEGARALADNTKLTTLSVSHNRIGAEGAKALAASKTLTSLDISENGIG 184
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
++G + L LN+ N+I E L L SL++ IGDEG+ L
Sbjct: 185 NEGACALATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANAR 244
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L L + T+VG+ G+ L+ L S+ + I D R LA +SL +L++++ I+
Sbjct: 245 LTTLNVERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGIS 304
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
G AL + T LT L+L I D+GA L SL + GL+DAG + +
Sbjct: 305 PAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKT 364
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
LT L+ N + D ++ L +L+V ++ I +AG R L L SL L + +V
Sbjct: 365 LTTLDAGDNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTRLASLDLRNNRV 423
Query: 508 TANDIKR-LQSRDLPNL-VSF 526
T ++ L +R L +L VSF
Sbjct: 424 TKAGVRALLANRTLSSLGVSF 444
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 174/390 (44%), Gaps = 16/390 (4%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L+ LD + C I+ G+ HL L L L+ R + I A+G + A L LD+
Sbjct: 74 ASLKELDLSRCRGPITAAGIAHLSRLP-LVRLNVR-DKRIGAEGARRLANHPTLTSLDVS 131
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L KL +L++ N I K L+ L SL IS + + + G
Sbjct: 132 NGRIGPEGARALADNTKLTTLSVS-HNRIGAEGAKALAASKTLTSLDISENGIGNEGACA 190
Query: 200 LKGLSISSVIFILCSMIIRLFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGS 255
L + L ++ + + V L + + LT L++ G + + +L+A
Sbjct: 191 L------ATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANAR 244
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
L LN+ R ++ DG + +L L + N I D L T+L +L+++S GI
Sbjct: 245 LTTLNVERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGIS 304
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
G L L L L +G +G + S T L S+++ +G+SD LA +
Sbjct: 305 PAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKT 364
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
L +L+ I D G AL + LT LD+ I ++GA L L SL++ +T
Sbjct: 365 LTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTRLASLDLRNNRVT 424
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
AGV+ + L++ TL +L + N K +E
Sbjct: 425 KAGVRAL--LANRTLSSLGVSFNYCSKQIE 452
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 5/235 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 216 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 274
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 275 -DSNTIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 332
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ S T L SL + S ++D+G L S + IR L + + LT
Sbjct: 333 QAWSANTTLISLSVRRSGLSDAGATTLAA-SKTLTTLDAGDNTIRDAGARA-LAANRTLT 390
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L++ + A +L+A L L+L +++ G +L L + FN
Sbjct: 391 TLDVRSNEIENAGARALAANTRLASLDLRNNRVTKAGVRALLANRTLSSLGVSFN 445
>gi|149175637|ref|ZP_01854257.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
gi|148845622|gb|EDL59965.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
Length = 718
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 109/200 (54%), Gaps = 10/200 (5%)
Query: 254 GSLFYLNLNRCQLSDDG-CEKFSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLE 305
+++ LN ++C++ DG E +++ L V++ EI T E + LKGL LE
Sbjct: 510 AAVWLLN-HQCEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLE 568
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISD 364
+L+L+ C + D+ L L G LK L+L +T + ++GL H+S L NL ++L I+D
Sbjct: 569 TLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITD 628
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L L S+NLD ITD G+ + L L++ +I+D+ L +
Sbjct: 629 EGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRM 688
Query: 425 RSLEICGGGLTDAGVKHIKD 444
++L + G +TD G++ IK+
Sbjct: 689 KNLYLEGSKITDQGIQKIKN 708
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++ L V D L L+ L++LD + +++ GL H+ L NLT LS ++N
Sbjct: 565 AKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHET-GLTNAGLSHISSLLNLTHLSLQKN 623
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G++A A L L ++L+R G+ +K +L+ LNIK I+D+ + L
Sbjct: 624 REITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIK-DTQISDTSIPLL 682
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG 202
L +K+L + SK+TD GI +K
Sbjct: 683 IKLNRMKNLYLEGSKITDQGIQKIKN 708
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSG 414
I DG + + L ++ R+I T +A L L L L L + D
Sbjct: 522 IIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVMDDA 581
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
A L L++L++ GLT+AG+ HI L +LT L+L +N +TD+ L+ ++ L L
Sbjct: 582 LAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLS 641
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
S+N+ IT G+ +K L L ++ +++ I L
Sbjct: 642 SINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLL 682
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 57/218 (26%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
IT M PL GL L++L + V D +A L+G
Sbjct: 551 QTITREVMAPLKGLAKLETLHLEDCHVMDDALAPLEG----------------------- 587
Query: 226 LTSLQKLTL--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
KLTL L+L +T A L +S+L +L +L+L + +
Sbjct: 588 -----KLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNR------------------ 624
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
EITDE L L L L S+NLD I DEG+ + L L + DTQ+ + +
Sbjct: 625 -----EITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSI 679
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKL----AGLSSLK 377
L L ++++ L + I+D ++K+ AG +K
Sbjct: 680 PLLIKLNRMKNLYLEGSKITDQGIQKIKNAYAGRDPIK 717
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 4/187 (2%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R Q + I +K + TR + LKGL KLE+L+++ C+ + D+ +
Sbjct: 526 RYEPVTQVQELPVVDFYIREIKFHPQTITR--EVMAPLKGLAKLETLHLEDCHVMDDA-L 582
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
PL G LK+L + + +T++G++++ L + + + + I L L +L+KL+
Sbjct: 583 APLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQA-LANLKKLS 641
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
+NL+ +T + + L +LN+ Q+SD K+ +K L L ++ITD+
Sbjct: 642 SINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSKITDQ 701
Query: 294 CLVHLKG 300
+ +K
Sbjct: 702 GIQKIKN 708
>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]
Length = 589
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 180/432 (41%), Gaps = 87/432 (20%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
R +N++ A+ M +L L+L C R+ L + G+ L+ L++ C + D+
Sbjct: 71 RGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAG 130
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLK-----------GLSISSVIFILCSMIIRLFC 221
+ + + NL+ L+IS + VT G+ L GL + V ++ RL
Sbjct: 131 INHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHY 190
Query: 222 LHVF-----------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ----L 266
+ ++ L + KLT LNL VT L L L YLN++ C L
Sbjct: 191 IDLWGSKISNKGASVLNTFPKLTYLNLAWTSVT-----KLPKLSFLEYLNMSNCTIDSIL 245
Query: 267 SDD----------GCEKFSKIGSLKVLNLGFNEITDEC------LVHLKGLTNLESLNLD 310
DD G ++ +L N F D L + +E LNL
Sbjct: 246 EDDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLS 305
Query: 311 SCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSL 367
SC +GD+ +V G NLK L LS T+V S+GL L+G + +LE ++LS T + D ++
Sbjct: 306 SCMMGDDSVEMVACAG-GNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAI 364
Query: 368 RKLAGLSSLKS-----------------------------------LNLDARQITDTGLA 392
++ + SLK LNL+ Q+ D L
Sbjct: 365 SFISMMPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLKLERLNLEHTQVRDEALY 424
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L+S L +L L A + D YL + L +L IC LT+ G+ K +L LL+
Sbjct: 425 PLSSFQELRYLSLKSASLADISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLD 484
Query: 453 LSQNCNLTDKTL 464
L LT+ T+
Sbjct: 485 LKGCWLLTEDTI 496
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 9/182 (4%)
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 343
G N + E + +L +L LNL C + L +TG+ +L+ L+LS +V +G+
Sbjct: 72 GDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAGI 131
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
H+ + NLE + +S T ++ ++ LA L +L L+L + D L +L L L ++
Sbjct: 132 NHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHYI 191
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
DL+G++I++ GA+ L F L L + +T + LS L LN+S NC + D
Sbjct: 192 DLWGSKISNKGASVLNTFPKLTYLNLAWTSVTK-----LPKLSFLEYLNMS-NCTI-DSI 244
Query: 464 LE 465
LE
Sbjct: 245 LE 246
>gi|18378037|emb|CAD21749.1| hypothetical leucine-rich repeat protein 1, LRRP1 [Trypanosoma
brucei]
Length = 1394
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 145/528 (27%), Positives = 230/528 (43%), Gaps = 70/528 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L L + +TD + H +C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILPNTHITDRDISHFSNCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G+ +I
Sbjct: 614 NKLLD-----VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPRLCVLNIKGVHLKDSVIG 668
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ VKL LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 669 SLGNGNSFVKLSLENC-KGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 726
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
+ ++V ++ + + S S ++ + S ++ + + SL L LN++ C +
Sbjct: 727 DLGRTQVDNNSLENI-CTSSSPLVSLNLSHCKKITSISA-IASLTALEELNIDNCCNVTS 784
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 304
+ L L L+ +++D+ S+ SL LNL F +ITD + L +T L
Sbjct: 785 GWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITD--VTALSKITML 842
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
E LNLD C +G+ L L + L + + Q+G S + S L N +S+ S
Sbjct: 843 EELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQCSILGNSKSLVKLNLERSR 902
Query: 365 G--SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
G S++ L+ +++L+ L LD Q + + S + L HL + + TD
Sbjct: 903 GRISVKALSNIATLEELVLDHAQ----EVCCIPSFSCLPHLRVLNVKYTD---------- 948
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
G +T K+I + SL LLNLS +TD + ++S L+ L LNV
Sbjct: 949 -------INGDVT----KNISESKSLRLLNLSHCKWVTD--ISVLSSLSTLEKLNVKCCN 995
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFRPE 529
G L L LR L +TA DI L S + L L FR E
Sbjct: 996 GIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCE 1043
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 139/588 (23%), Positives = 233/588 (39%), Gaps = 139/588 (23%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------GGLEHLRGL 105
+DLSG V D+ L L DC +L+ L+ ++CIQ+ D G RG+
Sbjct: 300 LDLSGVPVEDNCLKGLCDCGSLERLNISYCIQLKDINPLSNATATEELNLNGCRRITRGI 359
Query: 106 SNLTSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLD 137
+ +L R +N M + ++ L +L+
Sbjct: 360 GVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELN 419
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCN-------------CITDSDMKPLSGLTNLKS 184
+++C I G+ L L L LNIK + + +M+ ++GL+N+++
Sbjct: 420 IQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEA 479
Query: 185 LQ--ISCSKVT-------DSGI------AYLKGLSISSV--------IFILCSMIIRLFC 221
L ++ K++ D+GI LK L +S L ++ L
Sbjct: 480 LANILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNL 539
Query: 222 LHVF-------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
H + ++SL+ L LNL C A +++ L L L ++D F
Sbjct: 540 SHCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILPNTHITDRDISHF 599
Query: 275 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTGLC--NL 328
S +L L+L F N++ D + L +T LE LNLD+C +GL L LC N+
Sbjct: 600 SNCKNLVTLDLSFCNKLLD--VTTLSNITTLEDLNLDNCSNIRKGLSVLGELPRLCVLNI 657
Query: 329 KCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISDGSLRKL 370
K + L D+ +GS G ++ LS L LE +NL + + L
Sbjct: 658 KGVHLKDSVIGSLGNGNSFVKLSLENCKGFGDVKPLSNLVTLEELNLHYCDKVTSGMGTL 717
Query: 371 AGLSSLKSLNLDARQITD------------------------TGLAALTSLTGLTHLDLF 406
L L+ L+L Q+ + T ++A+ SLT L L++
Sbjct: 718 GRLLQLRVLDLGRTQVDNNSLENICTSSSPLVSLNLSHCKKITSISAIASLTALEELNID 777
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
SG LR + + D V+H+ + SL LNL+ ++TD T
Sbjct: 778 NCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITDVT--A 835
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+S +T L LN+ G+ L L R L+++ C++ +D ++
Sbjct: 836 LSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQ 883
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 171/376 (45%), Gaps = 31/376 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-SISSVI 209
L L LE LN+K CN I + L L L+ +S + +T IA L ++ +
Sbjct: 980 LSSLSTLEKLNVKCCNGIRKG-WESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLK 1038
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
F C + + ++ +Q L L + C L++L L L +L+L + SD
Sbjct: 1039 FFRCEKLSDVTVVY----KIQSLEELMVRSCSDGLKGLNALGTLPRLRFLHLRNLKGSDI 1094
Query: 270 GCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
E SL LN+ E+T+ L +T+LE L+L CG EG+ L L L
Sbjct: 1095 SVESIGTSKSLVRLNIEMREELTNA--TPLSNITSLEELSLRDCGDNLEGVGTLGKLPRL 1152
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQIT 387
K L+L +++ L + ++ S+NL+ + ++D + ++ L++L+ +NL
Sbjct: 1153 KSLDLGLSRISDDTLDDICLSRSITSLNLASSWKLTD--ISHISNLTALEEMNLSGCYPI 1210
Query: 388 DTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDL 445
++G AL+ L L ++L A +T Y+ K L +L I +TDA + +IK L
Sbjct: 1211 NSGWKALSELPRLRVVNLESASVTTRYDGYYISRCKYLVTLNIQLSDMTDASYIANIKTL 1270
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVS------LNVSNSRITSAGLRHLKPLKNLRS 499
L + K+ EL G + L + L++ SRIT LR ++P +
Sbjct: 1271 EELRI----------GKSKELTQGFSALFTLPRLRILDLFMSRITDEDLREIQPPHTIEE 1320
Query: 500 LTLESCKVTANDIKRL 515
L L C+ NDI L
Sbjct: 1321 LNLSYCE-ELNDITPL 1335
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 119/459 (25%), Positives = 195/459 (42%), Gaps = 65/459 (14%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL+ LDL + +
Sbjct: 189 IDNNDARHLFNIGTLEKLAITDTMQLT--NIRGISRLTNLMCLDLNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFIL 212
+KL L++ CN ITD+ P+S L L+ L + SC +T GI L
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLEALEELNLNSCYHIT-KGIGTL------------ 291
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD--- 268
M++RL +L+L G PV CL L GSL LN++ C QL D
Sbjct: 292 -GMLLRL-------------RILDLSGVPVEDNCLKGLCDCGSLERLNISYCIQLKDINP 337
Query: 269 ------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+GC + ++ + L+VL++ +++ L + L ++L
Sbjct: 338 LSNATATEELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSL 397
Query: 310 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
D+C G GD L L+ + L+ L + SG+ L L L +N+ IS
Sbjct: 398 DNCAGFGDMTL--LSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFT 455
Query: 369 KLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+ SL LN+++ IT + + AL ++ L L L G D+G L N L+ L
Sbjct: 456 GIGASKSLLQLNMES--ITGLSNVEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKML 513
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
++ G + ++ + ++ LNLS +T+ + IS L L LN+SN +AG
Sbjct: 514 DLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAG 571
Query: 488 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
++ L+ L L + +T DI + NLV+
Sbjct: 572 WEAIEKLQQLHVAILPNTHITDRDISHFS--NCKNLVTL 608
>gi|159486717|ref|XP_001701384.1| hypothetical protein CHLREDRAFT_153692 [Chlamydomonas reinhardtii]
gi|158271686|gb|EDO97500.1| predicted protein [Chlamydomonas reinhardtii]
Length = 293
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 11/162 (6%)
Query: 374 SSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKN 423
S+L LNL ++ TD L ++ L+ LT LD+FG R+TD+GAA L +
Sbjct: 116 STLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRG 175
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR 482
LRSLE CGGG+TDAG + L++LT LNLSQN L D + L + L L L+++++
Sbjct: 176 LRSLECCGGGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTN 235
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
+TSA LR L L LRSL L +V+ + RL++R P+L+
Sbjct: 236 VTSACLRELAQLPWLRSLALAGSRVSEAGVARLKARAHPDLI 277
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 274 FSKIGSLKVLNLGFNEI-------TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
+ +L LNL + ++ TD L H+ L+ L +L++ C + D G L G
Sbjct: 112 WGPPSTLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAP 171
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 385
L+ GL +LE GI+D LA L++L SLNL +
Sbjct: 172 ALR------------------GLRSLECCG---GGITDAGALCLARLTALTSLNLSQNPR 210
Query: 386 ITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+ D G+ +L + L L L L +T + L LRSL + G +++AGV +K
Sbjct: 211 LGDAGVRSLAAHLAELQVLSLNHTNVTSACLRELAQLPWLRSLALAGSRVSEAGVARLK 269
>gi|290977840|ref|XP_002671645.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
gi|284085215|gb|EFC38901.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
Length = 392
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 7/288 (2%)
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
C + +A + + L L++ + D G S + L LN+ +N I+ E +L
Sbjct: 98 CKIFSAMMKN-----RLVDLDMKMNNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLS 152
Query: 300 GLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
+ L L++ IG++G + G+ L L + ++G G++ + L L S+N+
Sbjct: 153 KMKQLTYLDISHNKIGEDGSKFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVG 212
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
I D + L + L LN+ I G ++ +T LT+L++ I D GA Y+
Sbjct: 213 GNRIGDQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYI 272
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
K L L+I L++ G K+I ++ LT L++ N N+ ++ E I + L +LN+
Sbjct: 273 SEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSN-NIREEGAEFIGEMKQLTNLNL 331
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
+ + IT G++HL L L SL++ + + D +L S + + +S+
Sbjct: 332 NGNYITDEGIKHLCGLYQLVSLSIYNTGIQMEDGAKLLSETMNHHLSY 379
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 123/233 (52%), Gaps = 6/233 (2%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKV 282
++++L KLT LN+ +++ LS + L YL+++ ++ +DG KF + I L
Sbjct: 126 YISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIGEDGS-KFICNGIRQLTH 184
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
LN+ +NEI + + L L SLN+ IGD+G+ +L + L L +S+ + G
Sbjct: 185 LNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVEG 244
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ +S +T L ++N+ I D + ++ + L L++ +++ G ++ + LT+
Sbjct: 245 AKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTN 304
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---IKDLSSLTLLN 452
LD+ I + GA ++ K L +L + G +TD G+KH + L SL++ N
Sbjct: 305 LDIRSNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYN 357
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 9/257 (3%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI----IRLFC 221
N I D + +S LT L L +S ++++ G YL + + + I + I + C
Sbjct: 117 NNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIGEDGSKFIC 176
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+++LT LN+ + + + AL L LN+ ++ D G E ++ L
Sbjct: 177 -----NGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLV 231
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
LN+ N I E + +T L +LN+ IGD+G ++ + L L++ + +
Sbjct: 232 DLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNYLSNR 291
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
G +++S + L ++++ I + + + L +LNL+ ITD G+ L L L
Sbjct: 292 GAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGLYQLV 351
Query: 402 HLDLFGARITDSGAAYL 418
L ++ I A L
Sbjct: 352 SLSIYNTGIQMEDGAKL 368
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRR 115
L S+++ G+ + D G+ HL L L+ N I++ G + + ++ LT+L+ R+
Sbjct: 204 KQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVE--GAKLVSEMTQLTNLNIRK 261
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G K + + L+KLD+ + + G + + L +L+I+ N I + +
Sbjct: 262 -NIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIR-SNNIREEGAEF 319
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ + L +L ++ + +TD GI +L GL
Sbjct: 320 IGEMKQLTNLNLNGNYITDEGIKHLCGL 347
>gi|406830019|ref|ZP_11089613.1| hypothetical protein SpalD1_00225 [Schlesneria paludicola DSM
18645]
Length = 509
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 173/375 (46%), Gaps = 52/375 (13%)
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
L G + V F+ + LH L S L LNL G +T A L L L L
Sbjct: 89 LPGRPVVRVTFLRQNKYFSGKYLH-LLKSFNALGTLNLNGTDITDADFSELRDLRHLSLL 147
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-------------------- 299
+L ++SD E S++ +LK L + EITD + LK
Sbjct: 148 DLGGTRISDASIEGLSQLKNLKELWIDGTEITDAGVQSLKEALPNAIVGKDAPDESQAIE 207
Query: 300 -------GLTNLESL---NLDSCGIG-----------DEGLVNLTGLCNLKCLELSDTQV 338
G+T E++ + G G +E L + +L+ L+L +
Sbjct: 208 TIRSLGGGVTRDEAVAGRPVIEVGFGGFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGD 267
Query: 339 GSSGL-------RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
S GL + +S L NL + + I+D L++++ LS L+SL L +IT+ G+
Sbjct: 268 ASHGLLATADGWKEISELNNLTRLTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGM 327
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
+ L LT+L LF ++TD+G LR + L +L + ++D G++ + L+SLT L
Sbjct: 328 KEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFL 387
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
++ + +TD L+ + GL+ L +L ++++RI+ GL+ L L NL L L +VT
Sbjct: 388 SVP-STEITDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQLDLAGTRVTGTG 446
Query: 512 IKRLQSRDLPNLVSF 526
+ L R+L +L S
Sbjct: 447 VGPL--RELESLHSL 459
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 179/390 (45%), Gaps = 45/390 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +++L+G+D+TD+ L+D +L LD +ISD +E GLS L
Sbjct: 118 NALGTLNLNGTDITDADFSELRDLRHLSLLDLG-GTRISDASIE---GLSQLK------- 166
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
NL +L ++ G+ +LK E+L N I D
Sbjct: 167 ---------------NLKELWIDGTEITDAGVQSLK-----EAL----PNAIVGKDAPDE 202
Query: 177 S-GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
S + ++SL ++ D +A + + F+ + + + + L L
Sbjct: 203 SQAIETIRSLGGGVTR--DEAVAGRPVIEVGFGGFLDVGPKTTIEEVLSAVKQFRSLRTL 260
Query: 236 NL-------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L G TA +S L +L L + +++D G ++ S++ L+ L L
Sbjct: 261 QLGSSGDASHGLLATADGWKEISELNNLTRLTIIGIEITDAGLKEISRLSQLESLRLINL 320
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+IT++ + + L NL +L L + D GL L GL L L L++ + GLR +
Sbjct: 321 KITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGLRQVGA 380
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
LT+L +++ T I+D L+ L GLSSLK+L L + +I+D GL L L L LDL G
Sbjct: 381 LTSLTFLSVPSTEITDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQLDLAGT 440
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
R+T +G LR ++L SL + ++D G
Sbjct: 441 RVTGTGVGPLRELESLHSLGLSNTQISDEG 470
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 47/342 (13%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI----LCSMIIRLFCLH 223
I+D+ ++ LS L NLK L I +++TD+G+ LK ++++ I + L
Sbjct: 154 ISDASIEGLSQLKNLKELWIDGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLG 213
Query: 224 VFLTSLQKLT-----------LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ------- 265
+T + + L++ L ++ SL L L
Sbjct: 214 GGVTRDEAVAGRPVIEVGFGGFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLL 273
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ DG ++ S++ +L L + EITD L + L+ LESL L + I ++G+ + L
Sbjct: 274 ATADGWKEISELNNLTRLTIIGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKL 333
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
NL L L D Q+ +GL L GL L++++L+ ISD LR++ L+SL L++ + +
Sbjct: 334 KNLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTE 393
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
ITD GL L L+ L +L L RI+D G L NL L++ G +T GV +++L
Sbjct: 394 ITDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLREL 453
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
SL SL +SN++I+ G
Sbjct: 454 ESLH-------------------------SLGLSNTQISDEG 470
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 170/396 (42%), Gaps = 64/396 (16%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFR--DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
DI+ F+EL R L+ + L R D +++ L Q + + W+D
Sbjct: 129 DITDADFSELRDLRHLSLLDLGGTRISDASIEGLS--QLKNLKELWID------------ 174
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
G+++TD+G+ LK+ L + +E +R L R+ A+ +
Sbjct: 175 ---GTEITDAGVQSLKEA--LPNAIVGKDAPDESQAIETIRSLGG----GVTRDEAVAGR 225
Query: 123 GM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN------CITDSDMK 174
+ F G LD+ T I L +K L +L + T K
Sbjct: 226 PVIEVGFGGF-----LDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWK 280
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+S L NL L I ++TD+G+ + LS L+ L L
Sbjct: 281 EISELNNLTRLTIIGIEITDAGLKEISRLS-----------------------QLESLRL 317
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
+NL+ +T + + L +L L L QL+D G + + L L+L N I+DE
Sbjct: 318 INLK---ITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEG 374
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L + LT+L L++ S I D GL L GL +LK L L+ T++ GL+ L GL NLE
Sbjct: 375 LRQVGALTSLTFLSVPSTEITDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQ 434
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
++L+ T ++ + L L SL SL L QI+D G
Sbjct: 435 LDLAGTRVTGTGVGPLRELESLHSLGLSNTQISDEG 470
>gi|443729605|gb|ELU15470.1| hypothetical protein CAPTEDRAFT_224593 [Capitella teleta]
Length = 858
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 192/402 (47%), Gaps = 36/402 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++++ + +L+ + L +L F LQ L L YP ++ + I + L
Sbjct: 444 LPANVAEGLLKQLMKEKLLRPKTLHPFIPSHLQTLLLDYYPYATNELLHEIRLH-NCLAH 502
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L S +TD GL + L+ L+ C Q++D L +R L NL L + ++
Sbjct: 503 LSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILE-STGVS 561
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
+GM+ L +LV LDL + T++ + NL K KL LN++ S++ LS
Sbjct: 562 DRGMQELFHQPLTSLVNLDLSK-TQVTHRIFNLAKNAPKLSHLNLE------QSEVASLS 614
Query: 178 GLTNL--KSLQISCSK-VTDSGIAY----LKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
G+ L +SL +S +K VTDS + ++ L+IS+ I + L LQ
Sbjct: 615 GVKELCLQSLNLSHTKIVTDSLLCLSGCDIRALNISNTPNIEGDL---------GLEYLQ 665
Query: 231 KLTLLNLEGCPVTAACLD---SLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLG 286
L LL P + D + L L+L N + DDG KI SL+ L L
Sbjct: 666 SLKLLQHLSLPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLC 725
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH- 345
+ITD L+ L+GL NLE ++LD I DEG + L+ L L++T + ++ L H
Sbjct: 726 NTKITDGGLLFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQ 785
Query: 346 -LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L+ L +NLS T ISD +R L L +L LNLD +I
Sbjct: 786 SLNPCYLLSKLNLSRTAISDKGVRCLR-LPNLTLLNLDHTRI 826
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 163/348 (46%), Gaps = 53/348 (15%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L L+ C+ I GL ++ L +L+ LN+ C +TD+ + + L NL+ L + +
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559
Query: 192 VTDSGIAYLKGLSISSVIFILCS---MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
V+D G+ L ++S++ + S + R+F L + KL+ LNLE V
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNL---AKNAPKLSHLNLEQSEVA----- 611
Query: 249 SLSALGSL--FYLNLNRCQLSDD------GCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
SLS + L LNL+ ++ D GC+ ++ LN+ + L G
Sbjct: 612 SLSGVKELCLQSLNLSHTKIVTDSLLCLSGCD-------IRALNISNTPNIEGDL----G 660
Query: 301 LTNLESLNL-------DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNL 352
L L+SL L + D GL T L L+L++ VG G+RH+ +T+L
Sbjct: 661 LEYLQSLKLLQHLSLPSRLSLSDHGL-QFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSL 719
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+ L T I+DG L L GL +L+ ++LD ITD G + + T L L L I++
Sbjct: 720 RRLLLCNTKITDGGLLFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISN 779
Query: 413 S-------GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
+ YL L L + ++D GV+ ++ L +LTLLNL
Sbjct: 780 AFLEHQSLNPCYL-----LSKLNLSRTAISDKGVRCLR-LPNLTLLNL 821
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 159/377 (42%), Gaps = 86/377 (22%)
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQL-SD 268
++ ++R LH F+ S L L L+ P T L + L +L+L C L +D
Sbjct: 456 LMKEKLLRPKTLHPFIPS--HLQTLLLDYYPYATNELLHEIRLHNCLAHLSLKACSLITD 513
Query: 269 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGL 325
G + S + LKVLNL ++TD CL ++ L NL+ L L+S G+ D G+ L L
Sbjct: 514 RGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTGVSDRGMQELFHQPL 573
Query: 326 CNLKCLELSDTQV---------GSSGLRHL----------SGLTNL--ESINLSFTGISD 364
+L L+LS TQV + L HL SG+ L +S+NLS T I
Sbjct: 574 TSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVASLSGVKELCLQSLNLSHTKIVT 633
Query: 365 GSL--------RKLA-----------GLSSLKSLNL------------------------ 381
SL R L GL L+SL L
Sbjct: 634 DSLLCLSGCDIRALNISNTPNIEGDLGLEYLQSLKLLQHLSLPSRLSLSDHGLQFTTAMP 693
Query: 382 -------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
+ + D G+ + +T L L L +ITD G +LR NL + + +
Sbjct: 694 LVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGGLLFLRGLVNLEEISLDRTAI 753
Query: 435 TDAGVKHIKDLSSLTLLNLSQ----NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
TD G ++ + L L+L++ N L ++L L+ LN+S + I+ G+R
Sbjct: 754 TDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLLS---KLNLSRTAISDKGVRC 810
Query: 491 LKPLKNLRSLTLESCKV 507
L+ L NL L L+ ++
Sbjct: 811 LR-LPNLTLLNLDHTRI 826
>gi|168054406|ref|XP_001779622.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668936|gb|EDQ55533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 128/461 (27%), Positives = 210/461 (45%), Gaps = 45/461 (9%)
Query: 18 RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
R +T+V L A R C L+ L L G+ D + +A+ L ++DLS ++V+D G+
Sbjct: 145 RDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSS 204
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL-INLV 134
L NL+ L CI ++D GL LR G +L L + + ++++G+ A G+ + L
Sbjct: 205 LALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQ 264
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
+L+L C +I L KL++L + K C L G LK L +S C V
Sbjct: 265 ELNLSYCKKISDVL--FASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELSLSKCQGV 322
Query: 193 TDSGIA-YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
TD+ + + + + + C I L + + L L +E CP + + L+
Sbjct: 323 TDASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLRMENCPSVTS--EGLT 380
Query: 252 ALGSLFY----LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGL-TNLE 305
+G F L+L L+D+G + S+ +++L LG+ +IT+ L + NL
Sbjct: 381 LIGRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLR 440
Query: 306 SLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 363
+ S GI D+G+ + C+ L+ +NLS+ I+
Sbjct: 441 EFDCYRSVGISDDGVAAIARGCD-----------------------RLKVVNLSYCASIT 477
Query: 364 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL-R 419
D SL LA L L L L A QIT G++ + S L LD+ R + D G L R
Sbjct: 478 DASLHSLALLRDLVQLELRACSQITSVGISYIGASCKHLRELDIKRCRFVGDPGVLALSR 537
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
+NLR + + LTD G+ + ++S + + L N+T
Sbjct: 538 GCRNLRQINLSYTALTDLGMTAVANMSCIQDMKLVHMKNVT 578
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 236/502 (47%), Gaps = 51/502 (10%)
Query: 44 VNDKWMDVIAS-QGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
V D+ + +A S LLS+ L + +G+ L +CS+LQ +D C QI D +
Sbjct: 70 VTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVKSLVECSSLQDVDVTHCTQIGDAEVIV 129
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L L +L L +T G+ A L RCT +L L
Sbjct: 130 LSKLKHLQKLKLNSCRDVTDVGLSA-----------LRRCT-------------ELRILG 165
Query: 162 IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGI---AYLKGLSISSVIFILCSMII 217
+K+C+ I DS ++ ++ G L+++ +S ++V+D G+ A LK L S+I +
Sbjct: 166 LKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLSIISCINVTDK 225
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRC-QLSDDGCEKFS 275
L CL SLQKL + V++ + +L+ + L LNL+ C ++SD F
Sbjct: 226 GLSCLRSGCMSLQKLDVAKCSN--VSSRGILALTGISLGLQELNLSYCKKISDVLFASFQ 283
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL----TGLCNLK- 329
K+ +L+V+ L I L L G L+ L+L C G+ D +V + TGL L
Sbjct: 284 KLKTLQVVKLNGCAIGRVNL-SLIGCKELKELSLSKCQGVTDASVVGVVTACTGLQKLDL 342
Query: 330 --CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
C +++D + + + GL +L N + S+G + L+ L+L +
Sbjct: 343 TCCRDITDVALEAIA-ANCKGLLSLRMENCP-SVTSEGLTLIGRNFAHLEELDLTDSNLN 400
Query: 388 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICGG-GLTDAGVKHI-K 443
D GL +++ T + L L + IT++G A + + KNLR + G++D GV I +
Sbjct: 401 DNGLKSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLREFDCYRSVGISDDGVAAIAR 460
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHL-KPLKNLRSLT 501
L ++NLS ++TD +L ++ L LV L + + S+ITS G+ ++ K+LR L
Sbjct: 461 GCDRLKVVNLSYCASITDASLHSLALLRDLVQLELRACSQITSVGISYIGASCKHLRELD 520
Query: 502 LESCKVTANDIKRLQSRDLPNL 523
++ C+ + SR NL
Sbjct: 521 IKRCRFVGDPGVLALSRGCRNL 542
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 163/378 (43%), Gaps = 67/378 (17%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL----SISSVIFI 211
++E L++ C +TD + ++ TN + L I + GIA +K L S+ V
Sbjct: 58 QVEHLDLSSCVEVTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVKSLVECSSLQDVDVT 117
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 269
C+ I + + + LN C VT L +L L L L C + D
Sbjct: 118 HCTQIGDAEVIVLSKLKHLQKLKLN--SCRDVTDVGLSALRRCTELRILGLKYCSGIGDS 175
Query: 270 GCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLC 326
G + + L+ ++L F E++D+ + L L NLE L++ SC + D+GL L +G
Sbjct: 176 GIQNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLSIISCINVTDKGLSCLRSGCM 235
Query: 327 NLKCLELSD-TQVGSSGLRHLSGLT-NLESINLSF-TGISD---GSLRKLA--------- 371
+L+ L+++ + V S G+ L+G++ L+ +NLS+ ISD S +KL
Sbjct: 236 SLQKLDVAKCSNVSSRGILALTGISLGLQELNLSYCKKISDVLFASFQKLKTLQVVKLNG 295
Query: 372 -----------GLSSLKSLNLDARQ-ITDTGLA-ALTSLTGLTHLDLFGAR-ITDSGAAY 417
G LK L+L Q +TD + +T+ TGL LDL R ITD
Sbjct: 296 CAIGRVNLSLIGCKELKELSLSKCQGVTDASVVGVVTACTGLQKLDLTCCRDITDVALEA 355
Query: 418 L---------------------------RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
+ RNF +L L++ L D G+K I + + L
Sbjct: 356 IAANCKGLLSLRMENCPSVTSEGLTLIGRNFAHLEELDLTDSNLNDNGLKSISRCTEMRL 415
Query: 451 LNLSQNCNLTDKTLELIS 468
L L ++T+ L IS
Sbjct: 416 LKLGYCMDITNAGLASIS 433
>gi|301126468|ref|XP_002909849.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262101999|gb|EEY60051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 427
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 19/340 (5%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL---KGLSISSVIFIL 212
L+ +N+ C+ +TD ++ L+ L+ L S+ + C +VTD I L + S++SV
Sbjct: 88 LKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGY 147
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ---LSD 268
C ++ + ++L KL LNL GC V + +L+ L +L LNL C L+D
Sbjct: 148 CK-VVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTD 206
Query: 269 DGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC 326
G +++ SL LNL +++TDE + L L L L + + G + D+G + L L
Sbjct: 207 GGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLV 266
Query: 327 NLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN-LDA 383
NL L+++ + +G L L S NL + + I D + + + L+ ++ LN +
Sbjct: 267 NLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKC 326
Query: 384 RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKH 441
++TD GL ++ L LT LD+ +TD G L L+SL + G G+ D G+
Sbjct: 327 GKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAA 386
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNV 478
+ LSSL +L+LS + +K L I +G++G V+ V
Sbjct: 387 LSHLSSLVILDLSNCRQVGNKALLGIDDGTGVSGAVAHQV 426
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 177/361 (49%), Gaps = 39/361 (10%)
Query: 55 QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN-LTSL 111
Q L V+L+G S +TD + L + S L S+ C Q++D ++ L SN LTS+
Sbjct: 84 QFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSV 143
Query: 112 SFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--C 167
+ ++ +G+ A A L L L+L C+++ G+ L L L++LN+ +CN
Sbjct: 144 NLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGA 203
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
+TD + L+ +T+L SL +S CS++TD GI+ L L
Sbjct: 204 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLST-----------------------L 240
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL 285
L+ L + N+ VT +L+ L +L L++ C ++D G E L NL
Sbjct: 241 VKLRHLEIANVG--EVTDQGFLALAPLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNL 298
Query: 286 GF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQVGSSG 342
+ +EI D H++ LT + LN CG + D GL ++ L NL L++ S V G
Sbjct: 299 WYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEG 358
Query: 343 LRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 400
L LS L L+S+ L +GI D + L+ LSSL L+L + RQ+ + L + TG+
Sbjct: 359 LNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIDDGTGV 418
Query: 401 T 401
+
Sbjct: 419 S 419
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 163/338 (48%), Gaps = 41/338 (12%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIH 76
LT+ S+E + + L + L V DK + ++ SQ +SL SV+L V +D G+
Sbjct: 99 LTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITA 158
Query: 77 LK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINL 133
+ + S L L+ C Q+ D G+ L L NL +L+ N A+T G+ A A + +L
Sbjct: 159 IASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSL 218
Query: 134 VKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
L+L C+++ G+ +L L+KL L I +TD L+ L NL +L ++ C
Sbjct: 219 TSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYN 278
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
+TD+G L + KL NL C + A +
Sbjct: 279 ITDAGTE--------------------------VLVNFPKLASCNLWYCSEIGDATFQHM 312
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESL 307
+L + +LN +C +++D G +K+ +L L++ FN +TDE L L L L+SL
Sbjct: 313 ESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFN-VTDEGLNELSKLNRLKSL 371
Query: 308 NLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 343
L C GI DEG+ L+ L +L L+LS+ QVG+ L
Sbjct: 372 YLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKAL 409
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 161/359 (44%), Gaps = 40/359 (11%)
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSL 250
+T+ I G + ++ FI +I L L +NL GC +T ++ L
Sbjct: 48 LTNKTICREVGRATHALSFIPARKVIFDENLMSLPMQFPHLKEVNLTGCSSLTDESVEQL 107
Query: 251 SALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNLGF-NEITDECLVHLKG-LTNLE 305
+ L L + L C D K S+ SL +NLG+ ++DE + + L+ L
Sbjct: 108 ANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITAIASNLSKLN 167
Query: 306 SLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGS---SGLRHLSGLTNLESINLS-FT 360
LNL C +GD G+ L L NL+ L L G+ G+ L+ +T+L S+NLS +
Sbjct: 168 YLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSLTSLNLSNCS 227
Query: 361 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 418
++D + L+ L L+ L + + ++TD G AL L L LD+ G ITD+G L
Sbjct: 228 QLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYNITDAGTEVL 287
Query: 419 RNFKNLRS--LEICG------------------------GGLTDAGVKHIKDLSSLTLLN 452
NF L S L C G +TD G++ I L +LT L+
Sbjct: 288 VNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLD 347
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
+ N+TD+ L +S L L SL + S I G+ L L +L L L +C+ N
Sbjct: 348 MVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGN 406
>gi|290970785|ref|XP_002668255.1| predicted protein [Naegleria gruberi]
gi|284081550|gb|EFC35511.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 136/271 (50%), Gaps = 1/271 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
++ +++LT L++ + +S + L L+++ + +G + S++ L LN
Sbjct: 21 LISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVEGVKLISEMKQLTSLN 80
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ NEI E ++ + L SL+++ IG EG ++ + L L++S +G G +
Sbjct: 81 IRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWNNIGVEGAK 140
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + L S+N+ I D + ++ + L SLN+ I G ++ + LT L+
Sbjct: 141 LISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLN 200
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ I D GA Y+ K L SL I + D G K+I ++ LT L+++ N + +
Sbjct: 201 INWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWN-KIGVEGA 259
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
+LIS + L SLN++++ I G ++L +K
Sbjct: 260 KLISEMKQLTSLNINDNNIGVEGAKYLSEMK 290
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 1/225 (0%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
LN+ +N I DE + + + L SL+++ IG EG ++ + L L++SD +G G
Sbjct: 7 LNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVEG 66
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ +S + L S+N+ I + ++ + L SL+++ I G ++ + LT
Sbjct: 67 VKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISEMKQLTS 126
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
LD+ I GA + K L SL I + D G K+I ++ LT LN+S N N+ +
Sbjct: 127 LDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN-NIGVE 185
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+LIS + L SLN++ + I G +++ +K L SL + K+
Sbjct: 186 GAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKI 230
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 144/301 (47%), Gaps = 11/301 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLNI + N I D +K +S + L SL I+ + + G Y+ S + L
Sbjct: 1 MKQLTSLNINYNN-IGDEGVKLISEMKQLTSLDINYNNIGVEGAKYI------SEMKQLT 53
Query: 214 SMIIRLFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
S+ I + V ++ +++LT LN+ + +S + L L++N + +
Sbjct: 54 SLDISDNNIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVE 113
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + S++ L L++ +N I E + + L SLN+ IGDEG ++ + L
Sbjct: 114 GAKYISEMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLT 173
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L +SD +G G + +S + L S+N+++ I D + ++ + L SLN+ +I D
Sbjct: 174 SLNISDNNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDE 233
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G ++ + LT LD+ +I GA + K L SL I + G K++ ++ T
Sbjct: 234 GAKYISEMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEMKRKT 293
Query: 450 L 450
+
Sbjct: 294 I 294
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 148/296 (50%), Gaps = 15/296 (5%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++++ +++ D G+ + + L SLD N+ I G +++ + LTSL NN
Sbjct: 4 LTSLNINYNNIGDEGVKLISEMKQLTSLDINYN-NIGVEGAKYISEMKQLTSLDISDNN- 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G+K + + L L++ R I G + + +L SL+I CN I K +S
Sbjct: 62 IGVEGVKLISEMKQLTSLNI-RINEIGVEGAKYISEMKQLTSLDIN-CNNIGVEGAKYIS 119
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL----HVFLTSLQKLT 233
+ L SL IS + + ++G + S + L S+ IR + +++ +++LT
Sbjct: 120 EMKQLTSLDISWNNIG------VEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLT 173
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LN+ + +S + L LN+N ++ D+G + S++ L LN+ +N+I DE
Sbjct: 174 SLNISDNNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDE 233
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
++ + L SL+++ IG EG ++ + L L ++D +G G ++LS +
Sbjct: 234 GAKYISEMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEM 289
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 25/202 (12%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN++ IGDEG+ ++ + L L+++ +G G +++S + L S+++S
Sbjct: 1 MKQLTSLNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I ++ ++ + L SLN+ +I + G+ GA Y+
Sbjct: 61 NIGVEGVKLISEMKQLTSLNI---RINEIGV---------------------EGAKYISE 96
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L SL+I + G K+I ++ LT L++S N N+ + +LIS + L SLN+
Sbjct: 97 MKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWN-NIGVEGAKLISEMKQLTSLNIRR 155
Query: 481 SRITSAGLRHLKPLKNLRSLTL 502
+ I G +++ +K L SL +
Sbjct: 156 NEIGDEGAKYISEMKQLTSLNI 177
>gi|290985429|ref|XP_002675428.1| predicted protein [Naegleria gruberi]
gi|284089024|gb|EFC42684.1| predicted protein [Naegleria gruberi]
Length = 451
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 148/284 (52%), Gaps = 6/284 (2%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ +++LT L++ + LS + L LN+ + ++ D+G + S++ L L++
Sbjct: 152 ISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLASLDI 210
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+ ++ E ++ + L SLN+ CG IG EG+ ++ + L L + ++ +G G
Sbjct: 211 SYTQVDVEGAKCIREMRQLTSLNI--CGNRIGIEGVKLISEMRQLTSLNIGESDIGIEGT 268
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ +S + L S+N+S I D + ++ + L SLN+ A +I + G ++ + L L
Sbjct: 269 KLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRSL 328
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
++ RI G + K L SL I +++ G K I ++ LTLLN+S N + D+
Sbjct: 329 NISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNISNN-EIGDEE 387
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+LIS + L SL++S ++I G + + +K L SL + ++
Sbjct: 388 TKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIADNRI 431
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 141/278 (50%), Gaps = 2/278 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT L++ G + +S + L L+++ + D+G + S++ L LN
Sbjct: 127 FISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLN 186
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G NEI DE ++ + L SL++ + EG + + L L + ++G G++
Sbjct: 187 IGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVK 245
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + L S+N+ + I + ++ + L SLN+ I D G ++ + L L+
Sbjct: 246 LISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLN 305
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ RI + GA ++ + LRSL I + GVK I ++ L LN+ N ++++
Sbjct: 306 IRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSN-RISNEGT 364
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+LIS + L LN+SN+ I + + +K L+SL +
Sbjct: 365 KLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDI 402
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 155/347 (44%), Gaps = 48/347 (13%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV- 224
N I D + K +S + L SL IS + + D G YL S + +L L++
Sbjct: 142 NGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYL-------------SEMKQLISLNIG 188
Query: 225 ---------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
+++ +++L L++ V + + L LN+ ++ +G + S
Sbjct: 189 KNEIDEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGVKLIS 248
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
++ L LN+G ++I E + + L SLN+ + IGDEG ++ + L L +
Sbjct: 249 EMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNIRA 308
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++ + G + +S + L S+N+S I ++ ++ + L SLN+ + +I++ G ++
Sbjct: 309 NRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLIS 368
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
+ LT L++ I D + K L+SL+I + G K
Sbjct: 369 EMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAK--------------- 413
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
LIS + L SLN++++RI G + + +K L S+TL
Sbjct: 414 ----------LISEMKQLTSLNIADNRIGGEGAKLISEMKQLTSITL 450
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 173/386 (44%), Gaps = 39/386 (10%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG--VNDKWMDVI---------AS 54
IS+Q FN + LT + F +Q Q+ VN + D + S
Sbjct: 70 ISKQFFNVIKERSKLTIQFKKKFTKKRVQLFLKSQFMNCIVNVTYSDWLLDSFEEAKFIS 129
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+ +SG+ + D + + L SLD + + I D G ++L + L SL+
Sbjct: 130 KMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANL-IGDEGAKYLSEMKQLISLNIG 188
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDM 173
+N +G K + + L LD+ G ++ + +L SLNI C N I +
Sbjct: 189 KNE--IDEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNI--CGNRIGIEGV 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSG------IAYLKGLSISSVIF-----ILCSMIIRLFCL 222
K +S + L SL I S + G + L L+IS+ + L S + +L L
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISL 304
Query: 223 HV-----------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
++ F++ +++L LN+ + + +S + L LN+ ++S++G
Sbjct: 305 NIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGT 364
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ S++ L +LN+ NEI DE + + L+SL++ IG EG ++ + L L
Sbjct: 365 KLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSL 424
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINL 357
++D ++G G + +S + L SI L
Sbjct: 425 NIADNRIGGEGAKLISEMKQLTSITL 450
>gi|283778456|ref|YP_003369211.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
gi|283436909|gb|ADB15351.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
Length = 397
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 27/289 (9%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
++L G T C+D L + L +++++ +S G + + L ++L EI D+
Sbjct: 115 ISLHGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCRELVSISLWGPEIEDDH 174
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L + G+ +++ L + I DEGL + NL LE+ + +GL+ L L L
Sbjct: 175 LKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNLPKLRK 234
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ L T ++D S+ + SL+ L LDA I+D GL L+ L L + G I +G
Sbjct: 235 LELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCPIDGTG 294
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
A L +NLR L DA S N N D+ L I+ L GL
Sbjct: 295 FAKLCELQNLR--------LVDAS---------------STNIN--DEGLAAIASLPGLT 329
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLE-SCKVTANDIKRLQSRDLPN 522
L + S++T GL+HL+ + LRSL + + ++T +D K L+++ LPN
Sbjct: 330 LLEIRQSKVTGKGLQHLERSEQLRSLLISITDELTLDDAKALKAK-LPN 377
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 101/204 (49%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L S ++L ++L G + L +++ + S+ +L + R ++D+G + F++ +L L +
Sbjct: 154 LASCRELVSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEI 213
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
ITD L L L L L L + D+ + + +L+ L L + GL
Sbjct: 214 YVAAITDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTF 273
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LS LE + +S I KL L +L+ ++ + I D GLAA+ SL GLT L++
Sbjct: 274 LSRNEKLEVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEI 333
Query: 406 FGARITDSGAAYLRNFKNLRSLEI 429
+++T G +L + LRSL I
Sbjct: 334 RQSKVTGKGLQHLERSEQLRSLLI 357
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 35/252 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V +S + ++ +GL L C L S+ + +I D L+ + G+ ++ L R+ +
Sbjct: 136 LRGVSISKTSISPAGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRS-S 193
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGL---VNLKGLMKLESLNIKWCNCITDSDMKP 175
IT +G++ FA NL L++ GL VNL L KLE L +TD M
Sbjct: 194 ITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNLPKLRKLELLG----TSVTDQSMPT 249
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ +L+ L++ ++D G+ FL+ +KL +L
Sbjct: 250 IGRFRSLRQLRLDAHSISDEGL--------------------------TFLSRNEKLEVL 283
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+ GCP+ L L +L ++ + ++D+G + + L +L + +++T + L
Sbjct: 284 LVSGCPIDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGL 343
Query: 296 VHLKGLTNLESL 307
HL+ L SL
Sbjct: 344 QHLERSEQLRSL 355
>gi|72385483|ref|XP_846409.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366582|emb|CAB95344.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1449
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 146/516 (28%), Positives = 229/516 (44%), Gaps = 71/516 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 611 ALNELNLNNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 668
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 669 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVELEDSVIGSLG 726
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 727 NGNSFVRLSLEHC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVLDLG 784
Query: 189 CSKVTDSGIAYLKGLSISSVIFIL--CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
++V ++ + + SI V+ L C I + + SL L LN++ C +
Sbjct: 785 RTQVDNNSLENICTSSIPLVLLNLSHCKKITSISAI----ASLTALEELNIDNCCNVTSG 840
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 305
+ L L L+ +++D+ S+ SL LNL F +ITD + L +T LE
Sbjct: 841 WNVFGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNLAFCKDITD--VTALSKITMLE 898
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI---NLSFTGI 362
LNLD C +G+ L L + L + + +G S + S L N +S+ NL + +
Sbjct: 899 ELNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQQCSILGNSKSLVKLNLERS-M 957
Query: 363 SDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
S++ L+ +++L+ L LD AR++ + S + L L + + TD
Sbjct: 958 GFISVKALSNIATLEELVLDHAREV-----CCIPSFSCLPRLRVLNLKYTD--------- 1003
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
G +T K+I + SL LLNLS +TD + ++S L+ L LNVS+
Sbjct: 1004 --------INGDVT----KNISESKSLRLLNLSHCKWVTD--ISVLSSLSTLEELNVSSC 1049
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
G L L LR L +TA DI L S
Sbjct: 1050 YGIKKGWESLGKLPLLRVAILSDTNITAKDIACLSS 1085
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 134/477 (28%), Positives = 206/477 (43%), Gaps = 68/477 (14%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + ++ +C +L +L+ FC I+D
Sbjct: 855 LSNTRINDENVRYVSECKSLNTLNLAFCKDITD--------------------------- 887
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + + L +L+L+ C I G+ L L K L++K C + DSD + S L N K
Sbjct: 888 VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECY-MGDSDAQQCSILGNSK 946
Query: 184 SLQ----------ISCSKVTDSGIAYLKGLSISSVIFILC----SMIIRLFCLHVFLTSL 229
SL IS + S IA L+ L + + C S + RL L++ T +
Sbjct: 947 SLVKLNLERSMGFISVKAL--SNIATLEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDI 1004
Query: 230 -----------QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
+ L LLNL C + LS+L +L LN++ C G E K+
Sbjct: 1005 NGDVTKNISESKSLRLLNLSHCKWVTD-ISVLSSLSTLEELNVSSCYGIKKGWESLGKLP 1063
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSD 335
L+V L IT + + L L L C E L ++T + ++ LE +
Sbjct: 1064 LLRVAILSDTNITAKDIACLSSCKTLVKLQFSWC----EELSDVTVVYEIQSLEELIVKK 1119
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 394
G GL L L L ++L SD S+ + SL LN++ R ++TD + L
Sbjct: 1120 YSDGLKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTD--ITPL 1177
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+++T L L L+ R T GA L LRSL++ ++D+ + +I +T LNL+
Sbjct: 1178 SNITSLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLT 1237
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+ LTD + IS LT L LN+ ++G L L LR L LES VT D
Sbjct: 1238 SSWKLTD--ISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRD 1292
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 150/586 (25%), Positives = 227/586 (38%), Gaps = 141/586 (24%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+ +
Sbjct: 358 SGVPVEDNCLKDLCDCGSLERLNLSYCIQLTDINPLSSATAIEELNLNGCRRITRGIGVV 417
Query: 109 TSLS-FRRNNAITAQGMKAFAGLI----NLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+L R + Q + G + + V+L LE C G + L ++ LE LNI+
Sbjct: 418 WALPKLRVLHMKDVQLEDSVIGSLGNGNSFVRLSLENCAGF-GDMTLLSSIVTLEELNIQ 476
Query: 164 WCNCITDS----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL------SISSVIFILC 213
C I P + N+K + IS T GI K L SI+ +I +
Sbjct: 477 KCADIISGVGCLGTLPYLRVLNVKEVHISSLDFT--GIGASKSLLQLTLESITGLIDVEA 534
Query: 214 -SMIIRLFCLHVF-----------LTSLQKLTLLNLEGCPVTAACLDSL----------- 250
+ I+ L L + L +L +L +L+L G L SL
Sbjct: 535 LANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNL 594
Query: 251 ------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH- 297
S+L +L LNLN C + G E K+ L V L ITD + H
Sbjct: 595 SHCWKMTNVSHISSLEALNELNLNNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 654
Query: 298 ----------------------LKGLTNLESLNLDSCGIGDEGLV---NLTGLC--NLKC 330
L +T LE LNLDSC +GL L LC N+K
Sbjct: 655 SKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKG 714
Query: 331 LELSDTQVGSSG---------LRH---------LSGLTNLESINLSFTGISDGSLRKLAG 372
+EL D+ +GS G L H LS L LE +NL + + L
Sbjct: 715 VELEDSVIGSLGNGNSFVRLSLEHCKGFGDVTPLSNLVTLEELNLHYCDKVTSGMGTLGR 774
Query: 373 LSSLKSLNLDARQITD------------------------TGLAALTSLTGLTHLDLFGA 408
L L+ L+L Q+ + T ++A+ SLT L L++
Sbjct: 775 LLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNLSHCKKITSISAIASLTALEELNIDNC 834
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
SG LR + + D V+++ + SL LNL+ ++TD T +S
Sbjct: 835 CNVTSGWNVFGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNLAFCKDITDVT--ALS 892
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+T L LN+ G+ L L R L+++ C + +D ++
Sbjct: 893 KITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQQ 938
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 120/447 (26%), Positives = 194/447 (43%), Gaps = 43/447 (9%)
Query: 98 GLEHLRGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLM 155
G ++ LSN+ +L ++A + +F+ L L L+L + T I+G + N+
Sbjct: 958 GFISVKALSNIATLEELVLDHAREVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESK 1016
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL--- 212
L LN+ C +TD + LS L+ L+ L +S G L L + V +
Sbjct: 1017 SLRLLNLSHCKWVTD--ISVLSSLSTLEELNVSSCYGIKKGWESLGKLPLLRVAILSDTN 1074
Query: 213 -----------CSMIIRL---FCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
C +++L +C + + +Q L L ++ L++L L
Sbjct: 1075 ITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYSDGLKGLNALGTLP 1134
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCG 313
L +L+L + SD E SL LN+ E+TD + L +T+LE L+L C
Sbjct: 1135 RLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTD--ITPLSNITSLEELSLWECR 1192
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
EG L L L+ L+L + + S L ++ + S+NL+ S L ++G+
Sbjct: 1193 DTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLT----SSWKLTDISGI 1248
Query: 374 S---SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEI 429
S +L+ LNL +G AL+ L L L+L +T G Y+ K+L +L I
Sbjct: 1249 SKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTLNI 1308
Query: 430 CGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+TDA + +IK L L + C+ + + L L LN+ S IT L
Sbjct: 1309 QLSDMTDASCLANIKTLEELHI----GECDELTQGFSALFTLPRLRILNLMGSLITDEDL 1364
Query: 489 RHLKPLKNLRSLTLESCKVTANDIKRL 515
R ++P + L L CK NDI L
Sbjct: 1365 REIQPPHTIEELNLSYCK-NLNDITPL 1390
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 130/320 (40%), Gaps = 79/320 (24%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS +++T + L C L L F++C ++SD + + + +L L ++ + G
Sbjct: 1070 LSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVY--EIQSLEELIVKK----YSDG 1123
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLT 180
+K L L +L + G ++++ + L LNI+ +TD + PLS +T
Sbjct: 1124 LKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTD--ITPLSNIT 1181
Query: 181 NLKSLQISCSKVTDSGIAYLKGL----SISSVIFILCSMIIRLFCLHVFLTSLQ------ 230
+L+ L + + T G L+ L S+ + + + CL F+TSL
Sbjct: 1182 SLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWK 1241
Query: 231 --------KLTLL---NLEGCPVTAACLDSLSALGSLFYLNL--------------NRC- 264
KLT L NL GC + ++LS L L LNL +RC
Sbjct: 1242 LTDISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCK 1301
Query: 265 -------QLSD------------------DGCEKFSK-------IGSLKVLNLGFNEITD 292
QLSD C++ ++ + L++LNL + ITD
Sbjct: 1302 SLVTLNIQLSDMTDASCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMGSLITD 1361
Query: 293 ECLVHLKGLTNLESLNLDSC 312
E L ++ +E LNL C
Sbjct: 1362 EDLREIQPPHTIEELNLSYC 1381
>gi|348503268|ref|XP_003439187.1| PREDICTED: hypothetical protein LOC100705990 [Oreochromis
niloticus]
Length = 894
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 202/407 (49%), Gaps = 21/407 (5%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + + R L +LE F C +Q L YP ++ + + + ++L + L
Sbjct: 474 ELAELLLNHMSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRA-FTALKHLSL 532
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL L LQ L+ C +++D L+H+ GL NL LS + +T G
Sbjct: 533 VNSPLITDSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTK-VTDAG 591
Query: 124 MKAFAGLIN--LVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + L L + +L L+IK D+ L+ ++
Sbjct: 592 MVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV---KDLTALAAMS 648
Query: 181 NLKSLQISCSKVTDSGIAYLK-GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
+L++L + + VT++ + +L +++S+ + + L + S KLT + L G
Sbjct: 649 SLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVADGSHALQII--SGLKLTRITLPG 706
Query: 240 -CPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
VT + L LS L L L+L + Q++D G S + LK L+L ++TD L
Sbjct: 707 RHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPS 766
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGL---TNLE 353
L+ + L+ L LD + G+ +L T L +L+ L L+ TQVG + +R GL + L
Sbjct: 767 LRCMQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDNVVR--KGLIRCSQLV 824
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+NLS T I+D L+ L + L +NLD ++ G+A+L S T +
Sbjct: 825 KLNLSRTRITDHGLKYLKQM-RLAQVNLDGTGVSLMGIASLLSCTNI 870
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 155/296 (52%), Gaps = 22/296 (7%)
Query: 239 GCPVTAACLDS-----------LSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLG 286
GCP+ L+S L A +L +L+L N ++D G S + L+ LNL
Sbjct: 499 GCPIQKFVLNSYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLCILSTLVKLQYLNLA 558
Query: 287 F-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCN-LKCLELSDTQVGSSGL 343
+++TD CL H+ GL NL L+LD + D G+V L + + L L L+ T V + L
Sbjct: 559 SCSKLTDSCLQHITGLKNLCFLSLDQTKVTDAGMVLYLQSVPSCLSQLSLNQTAVTETTL 618
Query: 344 RHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
L + + L +++ T + D L LA +SSL++LNLD +T+ L L + LT
Sbjct: 619 AVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGVTEASLEHLATHPALTS 676
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLTLLNLSQNCNL 459
L L G + D G+ L+ L+ I G +TD+G+ + L+ L+ L+L+ +
Sbjct: 677 LTLVGIPVAD-GSHALQIISGLKLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYTQI 735
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
TD+ + +S LT L L++SN+++T AGL L+ ++ L+ L L+ VT+ + L
Sbjct: 736 TDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLDRTAVTSRGVADL 791
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 169/345 (48%), Gaps = 33/345 (9%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L ++ T GL L L+KL+ LN+ C+ +TDS ++ ++GL NL
Sbjct: 521 LRAFTALKHLSLVNSPLIT--DSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLC 578
Query: 184 SLQISCSKVTDSGIA-YLKGLS-------------ISSVIFILCSMIIRLFCLHVFLTSL 229
L + +KVTD+G+ YL+ + + + +L + + +L L + T +
Sbjct: 579 FLSLDQTKVTDAGMVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV 638
Query: 230 QKLTL---------LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
+ LT LNL+G VT A L+ L+ +L L L ++ DG I L
Sbjct: 639 KDLTALAAMSSLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVA-DGSHALQIISGL 697
Query: 281 KVLNL---GFNEITDECLVHLKGLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDT 336
K+ + G + +TD L L LT L L+L D I D+G+ +L+ L LK L LS+T
Sbjct: 698 KLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNT 757
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGL-AAL 394
QV +GL L + L+ + L T + S G + L L+ L L + Q+ D + L
Sbjct: 758 QVTDAGLPSLRCMQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDNVVRKGL 817
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
+ L L+L RITD G YL+ + L + + G G++ G+
Sbjct: 818 IRCSQLVKLNLSRTRITDHGLKYLKQMR-LAQVNLDGTGVSLMGI 861
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 149/304 (49%), Gaps = 36/304 (11%)
Query: 225 FLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLK 281
L++L KL LNL C +T +CL ++ L +L +L+L++ +++D G + S L
Sbjct: 545 ILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTKVTDAGMVLYLQSVPSCLS 604
Query: 282 VLNLGFNEITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L+L +T+ L L + L L++ + D L L + +L+ L L T V
Sbjct: 605 QLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKVKD--LTALAAMSSLQTLNLDGTGVTE 662
Query: 341 SGLRHLSGLTNLESINLSFTGISDGS--LRKLAGLSSLKSLNLDARQ-ITDTGLAALTSL 397
+ L HL+ L S+ L ++DGS L+ ++GL L + L R +TD+GL+ L+ L
Sbjct: 663 ASLEHLATHPALTSLTLVGIPVADGSHALQIISGLK-LTRITLPGRHSVTDSGLSFLSRL 721
Query: 398 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
T L+ LDL +ITD G ++L L+ L + +TDAG+ ++ + L L L +
Sbjct: 722 TLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLDRT 781
Query: 457 CNLTDKTLELISGL-------------------------TGLVSLNVSNSRITSAGLRHL 491
+ +LI+ L + LV LN+S +RIT GL++L
Sbjct: 782 AVTSRGVADLITCLPHLQVLGLASTQVGDNVVRKGLIRCSQLVKLNLSRTRITDHGLKYL 841
Query: 492 KPLK 495
K ++
Sbjct: 842 KQMR 845
>gi|320169700|gb|EFW46599.1| protein tyrosine kinase [Capsaspora owczarzaki ATCC 30864]
Length = 1026
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 156/350 (44%), Gaps = 4/350 (1%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL+ LT+LS + N+ IT+ AF GL +L ++ L+ + GL + ++
Sbjct: 61 GLTMLTTLSLQFNH-ITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLS 119
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ N +T +GLT L L +S +++T L+ + + L + IIR
Sbjct: 120 Y-NKLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQL-SLTNNIIRTIPSS 177
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
F T L L LNL G TA ++ + L +L YL+L C ++ F+ + +L L
Sbjct: 178 AF-TGLTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFL 236
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
L N+I + GLT L+ L L S I T L L L+LS + S
Sbjct: 237 TLQSNQILNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSA 296
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+GL+ L ++LS+ I+ S GLS+L L L QIT A LT LT L
Sbjct: 297 NTFTGLSALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPADAFAGLTALTQL 356
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
LF +IT A L LE+ +T + L++LT L L
Sbjct: 357 FLFENQITSIPADAFAGLTALTQLELSHTRITSISANAFRGLTALTALYL 406
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 170/420 (40%), Gaps = 52/420 (12%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
GL L+ L + + N +T + +GLT L L +S +++T + GL++ + +
Sbjct: 11 FAGLTALQYLELSY-NQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTGLTMLTTLS 69
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+ + I L + F T L LT + L+ +T + + L S+ +L+ +L+
Sbjct: 70 LQFNHITSL-ATNAF-TGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYNKLTSLS 127
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
F+ + +L L+L N+IT LT L L+L + I TGL L
Sbjct: 128 ANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTGLTALNT 187
Query: 331 LEL---------SDTQVGSSGLRHLS---------------GLTNLESINLSFTGISDGS 366
L L ++ G S L +LS GLT L + L I +
Sbjct: 188 LNLGGNLFTAIPANAFTGLSALNYLSLFACLITVISANAFTGLTALTFLTLQSNQILNIP 247
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
AGL++L+ L L + QIT A T L+ LT LDL IT A L
Sbjct: 248 ANAFAGLTALQFLYLSSAQITSLSANAFTDLSALTQLDLSYNMITSLSANTFTGLSALTR 307
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-----------------------NLTDKT 463
L++ +T LS+LT L L +N +T
Sbjct: 308 LDLSYNMITSLSANTFTGLSALTQLYLFENQITSIPADAFAGLTALTQLFLFENQITSIP 367
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
+ +GLT L L +S++RITS + L L +L L S ++ N I DLP L
Sbjct: 368 ADAFAGLTALTQLELSHTRITSISANAFRGLTALTALYLHSVQL--NSIPANAFTDLPTL 425
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 111/269 (41%), Gaps = 25/269 (9%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
QL F+ + +L+ L L +N++T GLT L L+L + I TG
Sbjct: 2 QLISIPANAFAGLTALQYLELSYNQLTGISAQAFTGLTALNYLDLSNNRITKIPGSLFTG 61
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGIS-----DGSLR 368
L L L L + S +GLT+L + L +FTG+S D S
Sbjct: 62 LTMLTTLSLQFNHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQTDLSYN 121
Query: 369 KL--------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
KL GL++L L+L QIT A + LT LT L L I ++
Sbjct: 122 KLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNIIRTIPSSAFTG 181
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
L +L + G T LS+L L+L C +T + +GLT L L + +
Sbjct: 182 LTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFA-CLITVISANAFTGLTALTFLTLQS 240
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTA 509
++I + L L+ L L S ++T+
Sbjct: 241 NQILNIPANAFAGLTALQFLYLSSAQITS 269
>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus]
gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]
Length = 586
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 121/461 (26%), Positives = 203/461 (44%), Gaps = 70/461 (15%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++ F I +V L E + L L+SLN+ C+ ++ S + +SG+T L+
Sbjct: 56 LEVFKYTIEVVDLSGENAVDSEW-MAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLR 114
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCP 241
L +S C KVTD+GI +L LSI + + LC + V L+SL+ L L+L G P
Sbjct: 115 ELNVSRCLKVTDAGIRHL--LSIPT-LEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLP 171
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
VT L SL L L YL+L ++S+ G + L LN+ + +T L
Sbjct: 172 VTDQALSSLQVLTKLQYLDLWGSKISNSGSDVLQMFPKLSFLNIAWTSVTK-----FPNL 226
Query: 302 TNLESLNLDSC-------GIG--------------------DEGLVNLTGLCNL------ 328
+LE LN+ +C G+G D G V + L L
Sbjct: 227 PHLECLNMSNCIIDSTLKGLGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNAS 286
Query: 329 -------------KCLELSDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG-L 373
+ L+LS T +G S + ++ + NL+ +NLS T +S + LAG +
Sbjct: 287 LHRFCFLSRMKAVEHLDLSSTTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKV 346
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNF-----KNL 424
S+L++L+L + D L+ + + L +DL I S ++ F +NL
Sbjct: 347 SNLETLSLSHTMVDDVALSYMNMMPSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNL 406
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLN--LSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
LE+ T + ++ LS L+ + ++ + TD L +S L L +L++ ++
Sbjct: 407 DCLEMLNLEHTHVDDESLRPLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAV 466
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
+T+ KP+ L+ + L C + D + R P +
Sbjct: 467 LTNQAFDTFKPVATLQKIDLRGCWLLTEDGLSVFHRRFPQI 507
>gi|428163352|gb|EKX32427.1| hypothetical protein GUITHDRAFT_121393 [Guillardia theta CCMP2712]
Length = 1894
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 204/433 (47%), Gaps = 35/433 (8%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
GL++L SL + +N +T+ F GL +L L L + T + + N GL L++L
Sbjct: 424 GLTSLQSL-YLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATVFN--GLASLQTLY 480
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------SGIA-----YLKGLSISSVIF 210
+ + N +T +GL +L++L +S +++T +G+A YL G ++SV
Sbjct: 481 L-YDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYLSGNELTSVPE 539
Query: 211 ILCSMIIRLFCLH------------VF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
+ + + L L+ VF L SLQ L L + E +T+ + L SL
Sbjct: 540 TVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNE---LTSIPETVFAGLASL 596
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
YL L+ +L+ F+ + SL+ L L +NE+T GL +L++L L +
Sbjct: 597 QYLYLSSNKLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLYLSYNKLTS 656
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
GL +L+ L L D ++ S +GL +L S++L F ++ AGL+SL
Sbjct: 657 VPATVFAGLASLRSLGLYDNKLTSVPATVFAGLASLRSLSLDFNELTSIPETVFAGLTSL 716
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
++L L ++T L L +L L ++T ++++L + G LT
Sbjct: 717 QTLYLYDNELTSVPETVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYLSGNELTS 776
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
L+SL LN+S N LT + GL L +L++S +++TS L +
Sbjct: 777 VPETVFNGLASLQYLNVSSN-ELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLAS 835
Query: 497 LRSLTLESCKVTA 509
LRSL L++ ++T+
Sbjct: 836 LRSLYLDNNELTS 848
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 186/410 (45%), Gaps = 13/410 (3%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L L + +N +T+ FAGL ++ L L GL L+ L +
Sbjct: 112 GLASLQYL-YLSSNKLTSIPETVFAGLASIRVLILSGNELTSVPETVFAGLASLQYLYLD 170
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI----LCSMIIRL 219
N +T +GL +L++L +S +K+T GL+ +++ L S+ +
Sbjct: 171 -NNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLASLRSLYLDNNELTSVPETV 229
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
F L SLQ L L + E + A L++L +L YL+ N+ L+ F + S
Sbjct: 230 FA---GLASLQTLYLYDNELTSIPATVFAGLASLQTL-YLSYNK--LTSVPETVFDGLAS 283
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L+ L L +NE+T GL +L+ L L S + GL +L+ L LS ++
Sbjct: 284 LRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSGNELT 343
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
S +GL +L+++ LS ++ GL+SL++L L + ++T L
Sbjct: 344 SVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLAS 403
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L +L L+ +T A +L+SL + LT L+SL L LS N L
Sbjct: 404 LQYLYLYDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSN-KL 462
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
T + +GL L +L + ++ +TS L +L++L L S ++T+
Sbjct: 463 TSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTS 512
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 112/428 (26%), Positives = 180/428 (42%), Gaps = 25/428 (5%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + +N +T+ FAGL +L L L GL L SL +
Sbjct: 232 GLASLQTL-YLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFDGLASLRSLYLS 290
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--------------SISSVI 209
+ N +T GL +L+ L +S +K+T GL S+ +
Sbjct: 291 Y-NELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETV 349
Query: 210 FILCSMIIRLFCLHVFLTS--------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
F + + L+ LTS L L L L +T+ + L SL YL L
Sbjct: 350 FTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYL 409
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
+L+ F+ + SL+ L L N++T GL +L++L L S +
Sbjct: 410 YDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATV 469
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
GL +L+ L L D ++ S +GL +L+++ LS ++ AGL+SL++L L
Sbjct: 470 FNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYL 529
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
++T L L L L G +T +L++L + LT
Sbjct: 530 SGNELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETV 589
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
L+SL L LS N LT + +GL L +L +S + +TS L +L++L
Sbjct: 590 FAGLASLQYLYLSSN-KLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLY 648
Query: 502 LESCKVTA 509
L K+T+
Sbjct: 649 LSYNKLTS 656
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 27/344 (7%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N +T +GL +L+ L +S +K+T SI +F
Sbjct: 100 NKLTSVPATVFAGLASLQYLYLSSNKLT----------SIPETVF--------------- 134
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L + +L L G +T+ + L SL YL L+ +L+ F+ + SL+ L L
Sbjct: 135 -AGLASIRVLILSGNELTSVPETVFAGLASLQYLYLDNNKLTSVPATVFNGLASLQTLYL 193
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N++T GL +L SL LD+ + GL +L+ L L D ++ S
Sbjct: 194 SSNKLTSVPETVFNGLASLRSLYLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATV 253
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+GL +L+++ LS+ ++ GL+SL+SL L ++T L L +L L
Sbjct: 254 FAGLASLQTLYLSYNKLTSVPETVFDGLASLRSLYLSYNELTSVPETVFDGLASLQYLYL 313
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
++T A +L++L + G LT L+SL L LS N LT
Sbjct: 314 SSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTLYLSSN-KLTSVPET 372
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+ +GL L +L +S++++TS L +L+ L L ++T+
Sbjct: 373 VFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYLYDNELTS 416
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 112/416 (26%), Positives = 181/416 (43%), Gaps = 40/416 (9%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
GL++L L + NN +T+ FAGL ++ L L T + + N GL L+ LN
Sbjct: 736 GLASLQYL-YLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFN--GLASLQYLN 792
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+ N +T GL +L++L +S +K+T S+ +F
Sbjct: 793 VS-SNELTSVPETVFDGLASLQTLDLSYNKLT----------SVPETVF----------- 830
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L SL+ L L N E +T+ + L SL+ L+L+ +L+ F L
Sbjct: 831 --AGLASLRSLYLDNNE---LTSVPETVFAGLDSLWRLDLHSNRLASLALSLFYDCHDLM 885
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L L N ++ L GL +LE+L L S + D L +L L L + ++ S
Sbjct: 886 ELYLNNNLLSGLLPGSLDGLVSLEALYLHSNQLADISSDVFAQLSSLTTLTLHNNRLSSL 945
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
+GL L ++++ ++ S GLS+L +L+L +T ALT L +
Sbjct: 946 SPGAFAGLARLTTLSIHHNRLTRLSPGAFQGLSTLATLDLHDNHLTSLTAGALTGLDAMR 1005
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
LDL ++ D A L N LR+L + LT ++ L+ L L LS N
Sbjct: 1006 ALDLSSNKLADLPAQALHNLTGLRNLSLDDNQLTSLSAGVLEPLAGLEYLWLSHN----- 1060
Query: 462 KTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+ E+ +GL L SL + ++ +TS + L +LR+L + S A +R
Sbjct: 1061 RLAEVPAGLGSLASLRYLLLDHNPLTSLDVSLLDNKPDLRALGVNSDAFKALSAQR 1116
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 169/393 (43%), Gaps = 60/393 (15%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
Q++D + LS+LT+L+ NN +++ AFAGL L L + R TR+ G
Sbjct: 917 QLADISSDVFAQLSSLTTLTLH-NNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPG--A 973
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
+GL L +L++ N +T L+GL +++L +S +K+ D
Sbjct: 974 FQGLSTLATLDLH-DNHLTSLTAGALTGLDAMRALDLSSNKLAD---------------- 1016
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+ LH LT L+ L+L + + ++A L+ L+ L L +L+ NR G
Sbjct: 1017 ------LPAQALHN-LTGLRNLSLDDNQLTSLSAGVLEPLAGLEYL-WLSHNRLAEVPAG 1068
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCN 327
+ SL+ L L N +T + L +L +L ++S + + L L
Sbjct: 1069 ---LGSLASLRYLLLDHNPLTSLDVSLLDNKPDLRALGVNSDAFKALSAQRPSVLETLLE 1125
Query: 328 LKCLELSDTQVGSSG---LRHLSGLTNLESINLSFTGISDGSLRKLAG------------ 372
L + D Q S+ L LS LT L + I G L L+
Sbjct: 1126 LWLCKSDDDQDQSAAGELLDKLSQLTGLYLFGFDQSLIHAGMLSSLSSVRVLWLEDNLLD 1185
Query: 373 ---------LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
L SL+SL L +T +AAL++L+GLT L + IT A R+
Sbjct: 1186 QLPPGTFDQLPSLQSLYLIHNGLTAVPVAALSNLSGLTELHIVNDGITRVPAGAFRSLSG 1245
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
LR+L++ G ++ + +L ++ L+LS N
Sbjct: 1246 LRTLDLSGNLISSIEAEAFDNLDNVRQLDLSNN 1278
>gi|290970038|ref|XP_002668017.1| predicted protein [Naegleria gruberi]
gi|284081041|gb|EFC35273.1| predicted protein [Naegleria gruberi]
Length = 306
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 117/230 (50%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT L++ + + +S + L L+++ Q SD+G + S++ L L
Sbjct: 72 FISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQLTSLG 131
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I DE ++ + L SLNL I DEG ++ + L L++S + G++
Sbjct: 132 ISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNLIDVEGVK 191
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+ + L S+N+ + GI + ++ + L SLN+ +I D G ++ + L L
Sbjct: 192 FIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLISLI 251
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+ +I D GA Y+ + L SL I G + D G K+I D+ LT L++S
Sbjct: 252 ISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDIS 301
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 129/264 (48%), Gaps = 10/264 (3%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDS------LSALGSLFYLNLNRCQLSDDGCEKFS 275
+ +F+ S + ++NL V LDS +S + L L+++ Q+ G + S
Sbjct: 42 VELFMKSQFRNRIINL---KVFRYLLDSFEKLKFISDMKRLTSLDISFNQIGVQGVKFIS 98
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ L L++ FN+ +DE ++ + L SL + IGDEG ++ + L L L
Sbjct: 99 GMKQLTSLDISFNQASDEGAKYISEMKQLTSLGISKNLIGDEGAKYISEMKQLTSLNLYY 158
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++ G +++S + L S+++S I ++ + + L SLN+ I G ++
Sbjct: 159 NEICDEGAKYISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYIS 218
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
+ LT L++ I D GA Y+ K L SL I + D G K+I ++ LT LN+S
Sbjct: 219 EMKQLTSLNITNNEIGDEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQLTSLNISG 278
Query: 456 NCNLTDKTLELISGLTGLVSLNVS 479
N + D+ + IS + L SL++S
Sbjct: 279 N-EIGDEGAKYISDMKQLTSLDIS 301
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 32/263 (12%)
Query: 99 LEHLRGLSNLTSL--SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L+ + + LTSL SF N I QG+K +G+ L LD+ G + + +
Sbjct: 70 LKFISDMKRLTSLDISF---NQIGVQGVKFISGMKQLTSLDISFNQASDEGAKYISEMKQ 126
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
L SL I N I D K +S + L SL + +++ D G Y
Sbjct: 127 LTSLGIS-KNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKY----------------- 168
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
++ +++LT L++ + + + + L LN+ + +G + S+
Sbjct: 169 ---------ISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISE 219
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
+ L LN+ NEI DE ++ + L SL + IGDEG + + L L +S
Sbjct: 220 MKQLTSLNITNNEIGDEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQLTSLNISGN 279
Query: 337 QVGSSGLRHLSGLTNLESINLSF 359
++G G +++S + L S+++SF
Sbjct: 280 EIGDEGAKYISDMKQLTSLDISF 302
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 141/340 (41%), Gaps = 64/340 (18%)
Query: 6 ISQQIFN------ELV--YSRCLTEVSLEAFRDCALQD--LCLGQYPGVNDKWMDV-IAS 54
IS+Q FN +LV + + TE +E F ++ + L + + D + + S
Sbjct: 15 ISKQFFNVIKERSKLVIQFKQKFTEKRVELFMKSQFRNRIINLKVFRYLLDSFEKLKFIS 74
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
L S+D+S + + G+ + L SLD +F Q SD G +++ + LTSL
Sbjct: 75 DMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFN-QASDEGAKYISEMKQLTSLGIS 133
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ N I +G K + + L L+L + N I D K
Sbjct: 134 K-NLIGDEGAKYISEMKQLTSLNL-------------------------YYNEICDEGAK 167
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+S + L SL IS + + G+ ++K +++LT
Sbjct: 168 YISEMEQLTSLDISSNLIDVEGVKFIK--------------------------EMKQLTS 201
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LN+ + +S + L LN+ ++ D+G + S++ L L + N+I DE
Sbjct: 202 LNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLISLIISRNQIGDEG 261
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
++ + L SLN+ IGDEG ++ + L L++S
Sbjct: 262 AKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDIS 301
>gi|254416357|ref|ZP_05030110.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176795|gb|EDX71806.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 438
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 173/346 (50%), Gaps = 36/346 (10%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ L G SNLT L + +N+IT + AGL NL L LE + ++ L +L
Sbjct: 66 ISPLAGFSNLTKL-YLESNSIT--DISPLAGLSNLTVLSLE-----SNSITDVSPLAELS 117
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
+L + N + +D+ PL+GL+NL L ++ + +TD I L GLS +V+++ + I
Sbjct: 118 NLTKLYLNNNSITDVSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYLDSNSITD 175
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
+ L L LT+LNL +T L LS L +F N + +S +++
Sbjct: 176 VSPLA----GLSNLTVLNLGNNSITDVNPLAELSNLTKVFLTNNSITNIS-----PLAEL 226
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
+L VL L N ITD + L GL+NL LNLD+ I D + L GL NL L L +
Sbjct: 227 SNLTVLYLYSNSITD--ISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNAD 282
Query: 338 ---VGSSGLRHLS---GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
+G + + +S GL+NL +NL I+D + LA LS+L L+L + ITD +
Sbjct: 283 FFIIGENSITDISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--I 338
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
+ L L+ LT L L ITD + L NL L + +TDA
Sbjct: 339 SPLAGLSNLTKLYLDSNSITD--VSPLAGLSNLTELFLSSNSITDA 382
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 179/352 (50%), Gaps = 37/352 (10%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
W N ITD + PL+G +NL L + + +TD I+ L GLS +V+ + + I + L
Sbjct: 59 WDNSITD--ISPLAGFSNLTKLYLESNSITD--ISPLAGLSNLTVLSLESNSITDVSPLA 114
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
L LT L L +T + L+ L +L L LN ++D G + + +L VL
Sbjct: 115 ----ELSNLTKLYLNNNSITD--VSPLAGLSNLTKLYLNNNSITDIG--PLAGLSNLTVL 166
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSG 342
L N ITD + L GL+NL LNL + I D VN L L NL + L++ + +
Sbjct: 167 YLDSNSITD--VSPLAGLSNLTVLNLGNNSITD---VNPLAELSNLTKVFLTNNSI--TN 219
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT 401
+ L+ L+NL + L I+D + LAGLS+L LNLD ITD + LA L++LT L+
Sbjct: 220 ISPLAELSNLTVLYLYSNSITD--ISPLAGLSNLTVLNLDNNSITDISPLAGLSNLTELS 277
Query: 402 --HLDLF---GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ D F ITD + L NL L + +TD V + +LS+LT L+L N
Sbjct: 278 LGNADFFIIGENSITD--ISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSN 333
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+TD + ++GL+ L L + ++ IT + L L NL L L S +T
Sbjct: 334 S-ITD--ISPLAGLSNLTKLYLDSNSIT--DVSPLAGLSNLTELFLSSNSIT 380
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 148/314 (47%), Gaps = 54/314 (17%)
Query: 45 NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQ--SLDFNFCIQISDGGLEH 101
N+ DV G S+L + L+ + +TD G L SNL LD N +S
Sbjct: 126 NNSITDVSPLAGLSNLTKLYLNNNSITDIG--PLAGLSNLTVLYLDSNSITDVS-----P 178
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLSNLT L+ NN+IT + A L NL K+ L + + N+ L +L +L
Sbjct: 179 LAGLSNLTVLNLG-NNSIT--DVNPLAELSNLTKVFLT-----NNSITNISPLAELSNLT 230
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+ + + +D+ PL+GL+NL L + + +TD I+ L GLS
Sbjct: 231 VLYLYSNSITDISPLAGLSNLTVLNLDNNSITD--ISPLAGLS----------------- 271
Query: 222 LHVFLTSLQKLTLLNLEGCPV---TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
+L +L+L N + + + + L+ L +L LNL R ++D +++
Sbjct: 272 ------NLTELSLGNADFFIIGENSITDISPLAGLSNLTVLNLGRNSITD--VSPLAELS 323
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L L+LG N ITD + L GL+NL L LDS I D + L GL NL L LS +
Sbjct: 324 NLTKLSLGSNSITD--ISPLAGLSNLTKLYLDSNSITD--VSPLAGLSNLTELFLSSNSI 379
Query: 339 GSSGLRHLSGLTNL 352
+ L+ LTNL
Sbjct: 380 TDA--SPLAQLTNL 391
>gi|290972542|ref|XP_002669011.1| predicted protein [Naegleria gruberi]
gi|284082551|gb|EFC36267.1| predicted protein [Naegleria gruberi]
Length = 335
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 152/306 (49%), Gaps = 13/306 (4%)
Query: 167 CITDSDMKPLSG-----LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
CI S++ P S L+NL +L I+ + D G + L + + I +
Sbjct: 22 CINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGA 81
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
++ ++ LTLL L G + L+S+ L L YL+L +++D G + + + L
Sbjct: 82 RNI--GEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLV 139
Query: 282 VLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
LNL N+IT+ E + HLK LTNL+ + + IG+EG + + LK L ++D + S
Sbjct: 140 TLNLKNNKITNLETISHLK-LTNLD---VTTNKIGNEGAKYIAEMKRLKVLRINDNHITS 195
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G + LSG+T L I L I D + L +L+ L+L IT GL + L L
Sbjct: 196 DGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTICELINL 255
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
L + +I+D GA Y+ NL +L +C + G + I ++ SL L++++N NLT
Sbjct: 256 RRLHVSHNQISDLGAKYISGMNNLTALNVCDCNIGFEGAQFISNMQSLADLDITKN-NLT 314
Query: 461 DKTLEL 466
++L
Sbjct: 315 TNGIKL 320
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 146/304 (48%), Gaps = 22/304 (7%)
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
KLT L + +T ++ L +L L++NRC ++D G S++ +K L N I
Sbjct: 17 KLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGI 76
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL- 349
++ + NL L L IGD+GL ++ L L L+L + ++ GL+ L+ L
Sbjct: 77 GSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLE 136
Query: 350 ------------TNLESI------NLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDT 389
TNLE+I NL T I + + +A + LK L ++ IT
Sbjct: 137 KLVTLNLKNNKITNLETISHLKLTNLDVTTNKIGNEGAKYIAEMKRLKVLRINDNHITSD 196
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G L+ +T LT + L I D GA + NL L++ G G+T G+K I +L +L
Sbjct: 197 GAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTICELINLR 256
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L++S N ++D + ISG+ L +LNV + I G + + +++L L + +T
Sbjct: 257 RLHVSHN-QISDLGAKYISGMNNLTALNVCDCNIGFEGAQFISNMQSLADLDITKNNLTT 315
Query: 510 NDIK 513
N IK
Sbjct: 316 NGIK 319
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 168/336 (50%), Gaps = 10/336 (2%)
Query: 96 DGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
D LE + +SN + L+ ++ +T Q A L NL L + RC+ G N+
Sbjct: 3 DCNLETINEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQ 62
Query: 154 LMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
L +++ L + C N I + + + NL L++S +++ D G+ + LS + + +
Sbjct: 63 LKQIKYL--RACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLG 120
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+ I L +L+KL LNL+ +T L+++S L L L++ ++ ++G +
Sbjct: 121 ENEITDQGL--KSLNNLEKLVTLNLKNNKITN--LETISHL-KLTNLDVTTNKIGNEGAK 175
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+++ LKVL + N IT + L G+T L + L IGDEG +++ L NL+ L+
Sbjct: 176 YIAEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLD 235
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L + GL+ + L NL +++S ISD + ++G+++L +LN+ I G
Sbjct: 236 LKGAGITGEGLKTICELINLRRLHVSHNQISDLGAKYISGMNNLTALNVCDCNIGFEGAQ 295
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
++++ L LD+ +T +G RN K + L+
Sbjct: 296 FISNMQSLADLDITKNNLTTNGIKLCRNMKTSKKLK 331
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 151/341 (44%), Gaps = 38/341 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S S L + ++ S++T + SNL +L N C I+D G + +S L + +
Sbjct: 13 SNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRC-SIADLGTNN---ISQLKQIKY 68
Query: 114 RR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
R N I + G + + NL L+L GL ++ L KL L++ N ITD
Sbjct: 69 LRACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGE-NEITDQ 127
Query: 172 DMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+K L+ L L +L + +K+T+ I++L
Sbjct: 128 GLKSLNNLEKLVTLNLKNNKITNLETISHL------------------------------ 157
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
KLT L++ + ++ + L L +N ++ DG + S + L + L N I
Sbjct: 158 KLTNLDVTTNKIGNEGAKYIAEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLCDNLI 217
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
DE + + L NLE L+L GI EGL + L NL+ L +S Q+ G +++SG+
Sbjct: 218 GDEGALSIGLLYNLEYLDLKGAGITGEGLKTICELINLRRLHVSHNQISDLGAKYISGMN 277
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
NL ++N+ I + ++ + SL L++ +T G+
Sbjct: 278 NLTALNVCDCNIGFEGAQFISNMQSLADLDITKNNLTTNGI 318
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 46/248 (18%)
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
E+T + + L+NL +L+++ C I D G N++ L +K L + +GS G R++
Sbjct: 27 ELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGARNIGE 86
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ NL + LS +I D GL ++ L+ L +LDL
Sbjct: 87 MKNLTLLELS------------------------GNRIGDDGLESIGKLSKLAYLDLGEN 122
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLT---------------------DAGVKHIKDLSS 447
ITD G L N + L +L + +T + G K+I ++
Sbjct: 123 EITDQGLKSLNNLEKLVTLNLKNNKITNLETISHLKLTNLDVTTNKIGNEGAKYIAEMKR 182
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L +L ++ N ++T +++SG+T L + + ++ I G + L NL L L+ +
Sbjct: 183 LKVLRINDN-HITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGI 241
Query: 508 TANDIKRL 515
T +K +
Sbjct: 242 TGEGLKTI 249
>gi|343420998|emb|CCD18943.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1355
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 155/448 (34%), Positives = 227/448 (50%), Gaps = 59/448 (13%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL +L IT +
Sbjct: 62 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVPP 112
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ LI L KLDL CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L
Sbjct: 113 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLN 169
Query: 187 -ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF----LTSLQKLTLLNLEGCP 241
+ C+ +TD +S S++ LCS+ + C + L+ L +L L+L GC
Sbjct: 170 LMYCTGITD--------VSPLSLMSNLCSLYLS-HCTGITDVPPLSMLIRLEKLDLSGC- 219
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 300
+ LS L L LNL C D SK+ L+ LNL + ITD + L
Sbjct: 220 TGITDVSPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSK 276
Query: 301 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS- 358
L+ LE+LNL C GI D ++L + NL L LS G + + LS L LE ++LS
Sbjct: 277 LSRLETLNLMYCTGITDVSPLSL--MSNLCSLYLSHCT-GITDVSPLSMLIRLEKLDLSG 333
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSG 414
TGI+D S L+ LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD
Sbjct: 334 CTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD-- 385
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ L NL SL + G+TD V + D +L L+LS +TD +S L+ L
Sbjct: 386 VSPLSLMSNLCSLNLMYCTGITD--VSPLSDFINLRTLDLSFYTGITD-----VSPLSML 438
Query: 474 VSL-NVSNSRITSAGLRHLKPLKNLRSL 500
+ L N+S S I AG+ + PL L SL
Sbjct: 439 IRLENLSLSNI--AGITDVSPLSKLSSL 464
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 216/439 (49%), Gaps = 66/439 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L D NL++LD +F I+D + L L L +LS IT + + L +L L
Sbjct: 412 LSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGIT--DVSPLSKLSSLRTL 467
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
DL CT I + +L L +LE+LN+ +C IT D+ PLS ++NL SL +S C+ +TD
Sbjct: 468 DLSHCTGI-TDVSSLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITDV 524
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS 255
SM+IR L+K L+L GC + LS L
Sbjct: 525 PPL---------------SMLIR----------LEK---LDLSGC-TGITDVSPLSKLSR 555
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 313
L LNL C D SK+ L+ LNL + ITD + L ++NL SL L C G
Sbjct: 556 LETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTG 612
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 372
I D + L+ L L+ L+LS G + + LS L+ LE++NL + TGI+D S L+
Sbjct: 613 ITD--VPPLSMLIRLEKLDLSGCT-GITDVSPLSKLSRLETLNLMYCTGITDVS--PLSK 667
Query: 373 LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEIC 430
LS L++LNL ITD ++ L+ ++ L LDL ITD + L NL SL +
Sbjct: 668 LSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLS 723
Query: 431 G-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
G+TD V + +S+L L LS +TD + +S L+ L +LN+ + G+
Sbjct: 724 HCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSKLSRLETLNL----MYCTGIT 775
Query: 490 HLKPL---KNLRSLTLESC 505
+ PL NLR+L L C
Sbjct: 776 DVSPLSLISNLRTLDLSHC 794
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 131/429 (30%), Positives = 204/429 (47%), Gaps = 67/429 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL +L IT + + + NL L L
Sbjct: 761 SRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVSPLSLMSNLCSLYLSH 816
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAY 199
CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L + C+ +TD
Sbjct: 817 CTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLNLMYCTGITDVS--- 870
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
L+ L +L LNL C + LS + +L L
Sbjct: 871 -------------------------PLSKLSRLETLNLMYC-TGITDVSPLSLMSNLCSL 904
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDE 317
L+ C D SK+ L+ LNL + ITD + L ++NL +L+L C GI D
Sbjct: 905 YLSHCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITDV 961
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
++L + NL L LS G + + LS L+ LE++NL + TGI+D S L+ LS L
Sbjct: 962 SPLSL--MSNLCSLYLSHCT-GITDVPPLSKLSRLETLNLMYCTGITDVS--PLSKLSRL 1016
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSLEICG- 431
++LNL + TG+ ++ L+ L+ L+ ++ ITD + L NL SL +
Sbjct: 1017 ETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHC 1070
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
G+TD V + L L L+LS +TD + +S L+ L +LN+ + G+ +
Sbjct: 1071 TGITD--VPPLSMLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNL----MYCTGITDV 1122
Query: 492 KPLKNLRSL 500
PL L L
Sbjct: 1123 SPLSKLSRL 1131
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 196/403 (48%), Gaps = 67/403 (16%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--------------------- 170
NL L L CT I + L L +LE+LN+ +C ITD
Sbjct: 3 NLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGI 61
Query: 171 SDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
+D+ PLS ++NL++L +S C+ +TD S I+ L+ L +S C+ I + L +
Sbjct: 62 TDVSPLSLISNLRTLDLSHCTGITDVSPLSLISNLRTLDLSH-----CTGITDVPPLSML 116
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ +L L+L GC + LS L L LNL C D SK+ L+ LNL
Sbjct: 117 I----RLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNL 170
Query: 286 GF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+ ITD + L ++NL SL L C GI D + L+ L L+ L+LS G + +
Sbjct: 171 MYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCT-GITDV 225
Query: 344 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
LS L+ LE++NL + TGI+D S L+ LS L++LNL + TG+ ++ L+ L+
Sbjct: 226 SPLSKLSRLETLNLMYCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSR 279
Query: 403 LD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 457
L+ ++ ITD + L NL SL + G+TD V + L L L+LS
Sbjct: 280 LETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VSPLSMLIRLEKLDLSGCT 335
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+TD + +S L+ L +LN+ + G+ + PL L L
Sbjct: 336 GITD--VSPLSKLSRLETLNL----MYCTGITDVSPLSKLSRL 372
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 121/253 (47%), Gaps = 47/253 (18%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 1129 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPPLSMLIRLEKLDLSG 1184
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD----S 195
CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L + C+ +TD S
Sbjct: 1185 CTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLNLMYCTGITDVSPLS 1241
Query: 196 GIAYLKGLSISSVIFIL----CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
L+ L +S I SM+IR + L+L N+ G + +S
Sbjct: 1242 DFINLRTLDLSFYTGITDVSPLSMLIR----------FENLSLSNIAG-------ITDVS 1284
Query: 252 ALGSLFYLNLNRCQLSDDGC------EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 304
L +L LN+ L GC SK+ L+ LNL + ITD + L ++NL
Sbjct: 1285 PLSTLIRLNV----LYLSGCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLISNL 1338
Query: 305 ESLNLDSC-GIGD 316
+L+L C GI D
Sbjct: 1339 RTLDLSHCTGITD 1351
>gi|300691655|ref|YP_003752650.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078715|emb|CBJ51374.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum PSI07]
Length = 608
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 151/510 (29%), Positives = 218/510 (42%), Gaps = 58/510 (11%)
Query: 2 LPRDISQQIFNEL--VYSRCLTEVSLEAFRDCA--------LQDLC----LGQYPGVNDK 47
LP ++ Q+I + R + VS E RD + ++D LG YP +
Sbjct: 87 LPPELWQRIASSAGARPRRAMRAVSRE-LRDASRAVVTHLTIRDPAVLRHLGNYPALKSL 145
Query: 48 WM------DVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
+ D + + L +DLS GS ++ +GL HL L+SL I+I G
Sbjct: 146 RLKGALTLDALKALPPGLEHLDLSRCTGSAMSSAGLAHLA-ARPLKSLCM-IGIEIGVEG 203
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKL 157
+ L ++L SLS I + +A A ++ LDL RI G L G L
Sbjct: 204 AQRLAASTSLASLSLI-GCEIGDRAAEALAASQSIKSLDLS-ANRIGRDGARALAG-APL 260
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
SLN+ + N I D + L+ L SL +S + + D+G L ++
Sbjct: 261 VSLNL-YSNAIGDEGARALATSRTLTSLNLSSNGIDDAGAGALADNTL------------ 307
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
LT LNL+G + +L+ SL L+L +L D G +
Sbjct: 308 --------------LTQLNLQGNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGS 353
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
SL L++ NEI D+ L L+SLNL I G+ L G L L+L
Sbjct: 354 KSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACD 413
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
+ SSG L+ +L S+ L I D R LA S+L L L I TG AL
Sbjct: 414 IDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGN 473
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
L LDL G I D GAA L L SL++ G + AG + + ++L L+LS N
Sbjct: 474 DSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSAGAQQLAKSATLAELDLSAN- 532
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAG 487
+ + E +S T L +LNVS++ I AG
Sbjct: 533 RIGAEGAEALSRSTVLTTLNVSDNAIGDAG 562
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 182/417 (43%), Gaps = 21/417 (5%)
Query: 102 LRGLSNLTSL-SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
LR L N +L S R A+T +KA L LDL RCT G ++ GL L +
Sbjct: 133 LRHLGNYPALKSLRLKGALTLDALKALP--PGLEHLDLSRCT---GSAMSSAGLAHLAAR 187
Query: 161 NIKWCNCITDSDM-----KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+K C+ ++ + L+ T+L SL + ++ D + L+ S I L
Sbjct: 188 PLKSL-CMIGIEIGVEGAQRLAASTSLASLSLIGCEIGDRAA---EALAASQSIKSLDLS 243
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
R+ + L LNL + +L+ +L LNL+ + D G +
Sbjct: 244 ANRIGRDGARALAGAPLVSLNLYSNAIGDEGARALATSRTLTSLNLSSNGIDDAGAGALA 303
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
L LNL N I L T+L L+L + +GD G L G +L L +
Sbjct: 304 DNTLLTQLNLQGNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRG 363
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++G G + L+ L+S+NLS+ IS +R L G ++L L+L A I +G +AL
Sbjct: 364 NEIGDKGAKALARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALA 423
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L L L RI D GA L L L + G G+ G + + SL L+L
Sbjct: 424 RNASLASLYLGSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGG 483
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
N + D ++ L+SL++ +RI SAG + L +S TL ++AN I
Sbjct: 484 N-EIDDDGAAALARHPRLISLDLRGNRIRSAGAQQLA-----KSATLAELDLSANRI 534
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 172/417 (41%), Gaps = 35/417 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +A+ S+ S+DLS + + G L L SL+ + I D G L
Sbjct: 223 IGDRAAEALAAS-QSIKSLDLSANRIGRDGARALAGAP-LVSLNL-YSNAIGDEGARALA 279
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
LTSL+ +N I G A A L +L+L+ GG L L L++
Sbjct: 280 TSRTLTSLNLS-SNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLTDLDL- 337
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
N + D + L+G +L SL + +++ D G + +
Sbjct: 338 GNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGA--------------------KALARN 377
Query: 224 VFLTSLQ-KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
L SL L++L G + +L +L L+L C + G ++ SL
Sbjct: 378 ATLKSLNLSYNLISLRG-------VRALGGSATLSVLDLCACDIDSSGASALARNASLAS 430
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L LG N I D L + L L L GI G L G +L L+L ++ G
Sbjct: 431 LYLGSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDG 490
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
L+ L S++L I ++LA ++L L+L A +I G AL+ T LT
Sbjct: 491 AAALARHPRLISLDLRGNRIRSAGAQQLAKSATLAELDLSANRIGAEGAEALSRSTVLTT 550
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L++ I D+GA L +L SL+ G+ + G + ++ + LT QN N
Sbjct: 551 LNVSDNAIGDAGALALAKSTSLISLDARRSGIGEVGARALEANTRLT--GTPQNPNF 605
>gi|431930507|ref|YP_007243553.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
gi|431828810|gb|AGA89923.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
Length = 1283
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 180/376 (47%), Gaps = 37/376 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGL 203
L NL L L +L C+ +D+ PL+GLTNL++L C+ VTD +G+ L+ L
Sbjct: 108 LSNLGFLAGLTALQYLKCSSTQVADLTPLAGLTNLQALDCGCTPVTDLTPLAGLTNLRSL 167
Query: 204 SISSVIFILCSMIIRLF------CLHVF---LTSLQKLTLLNLEGCPVT-AACLDSLSAL 253
+ + L C H L L LT L C T A L+ +++L
Sbjct: 168 DCAYTPVAGLEPLADLTTLKSLDCRHTRVADLAPLAGLTELQFLDCGDTRVADLEPVASL 227
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+L L+ ++ D + + +L+ L+ GF ++ D L L LTNL+SL+ S
Sbjct: 228 ANLQSLDCGGTRVVD--LTPLAGLANLQALDCGFTQVAD--LAPLASLTNLQSLDCRSAP 283
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+ D G L L NL+ L T V L L+GLTNL S+N T + D L LA +
Sbjct: 284 VTDLG--PLASLGNLQSLICQFTPVAD--LAPLAGLTNLLSLNCWNTPVID--LAPLASI 337
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
+L+SLN + + D LA+L LT L L+ G+ +TD A L NLRSL+ G
Sbjct: 338 GNLQSLNCSSTPVAD--LASLAGLTNLRSLECAGSPVTD--LAPLAGLTNLRSLDCEGTP 393
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLK 492
+ D G L +LT L S +C T T L ++GLT L SL + + A L L
Sbjct: 394 VADLG-----PLINLTNLR-SLDCGFTRVTDLAPLAGLTNLQSLICRQTPV--ADLAPLA 445
Query: 493 PLKNLRSLTLESCKVT 508
L NL+S + ++T
Sbjct: 446 ALNNLQSFACGNTRIT 461
>gi|290972682|ref|XP_002669080.1| predicted protein [Naegleria gruberi]
gi|284082622|gb|EFC36336.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 174/352 (49%), Gaps = 6/352 (1%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+L LN+ W N + D D+K + L NL L++S ++++ + + ++ LS + + + +
Sbjct: 46 QLTELNVNW-NRLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
I + +L KLT LN+ +T+ + + L +L L+++ + +G +
Sbjct: 105 IENEGINSII--NLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIG 162
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
++ +LK+L NE+ + + L SL L IG+EG ++ L L L+L
Sbjct: 163 ELNNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGR 222
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++G+ G + L+ L L ++++ ISD L + L L L++ +I DTG+ +
Sbjct: 223 NEIGNEGFKLLTKLEKLTNLDMVSNNISD--LSSIGQLGLLNCLDVRKNKIEDTGIRNIC 280
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L GL L L G IT GA L L +L I + D G K I L++L L++S
Sbjct: 281 QLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDIST 340
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+T ++ I L+ L+SL+++ + I G+ ++ ++ L +L C +
Sbjct: 341 K-RITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNI 391
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 179/373 (47%), Gaps = 11/373 (2%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L L+ N+ ++ D ++ + L NLT L N I+ MK + L L KL + +
Sbjct: 47 LTELNVNWN-RLKDEDVKSIGNLKNLTLLELS-GNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ G+ ++ L KL LNI N IT +K + L+NL L IS + + G Y+
Sbjct: 105 IENEGINSIINLSKLTCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGE 163
Query: 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
L+ + I + + +F + + +LT L L G + +S L L L+L
Sbjct: 164 LN-NLKILVASDNELGVFGAKS-IGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLG 221
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
R ++ ++G + +K+ L L++ N I+D + GL N L++ I D G+ N+
Sbjct: 222 RNEIGNEGFKLLTKLEKLTNLDMVSNNISDLSSIGQLGLLN--CLDVRKNKIEDTGIRNI 279
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
L L L L + S G + LS + L ++++S T I D + +A L++LK L++
Sbjct: 280 CQLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDIS 339
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVK 440
++IT G+ + L+ L LD+ I D G Y+ + L +L C GL G K
Sbjct: 340 TKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAK 397
Query: 441 HIKDLSSLTLLNL 453
+ ++ LT+L++
Sbjct: 398 LLSEMEQLTVLDV 410
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 174/372 (46%), Gaps = 19/372 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM-----KPL 176
+G+K L NL LD I G L+ +G + LN +D+++ K +
Sbjct: 132 EGVKLIGKLSNLTILD------ISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSI 185
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ L SL + + + + G Y+ L+ ++ + + F L LT L+KLT
Sbjct: 186 GEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKL---LTKLEKLT-- 240
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
NL+ + L S+ LG L L++ + ++ D G ++G L L L N IT E
Sbjct: 241 NLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGA 300
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L + L +L++ I DEG + L LK L++S ++ ++G++ + L+ L S+
Sbjct: 301 KILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISL 360
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
++++ I D + ++ + L++LN I G L+ + LT LD+ RI G
Sbjct: 361 DINWNNIGDEGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKIKRIPGEGI 420
Query: 416 AYLRNFKNLRSL 427
L N +SL
Sbjct: 421 QLLENIARFKSL 432
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 139/293 (47%), Gaps = 8/293 (2%)
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
+ L+ ++ L +L G + D S L L LN+N +L D+ + + +L +
Sbjct: 19 KIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWNRLKDEDVKSIGNLKNLTL 73
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L L NEI+ + + L+ L L++ I +EG+ ++ L L CL + + + S G
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEG 133
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ + L+NL +++S I + + L++LK L ++ G ++ + LT
Sbjct: 134 VKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSIGEMNQLTS 193
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L L G I + GA Y+ L L++ + + G K + L LT L++ N N++D
Sbjct: 194 LCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSN-NISD- 251
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L I L L L+V ++I G+R++ L L +L L +T+ K L
Sbjct: 252 -LSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKIL 303
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 20/249 (8%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLE-------------------SLNLDSCGIGDEGL 319
+L LN+ +N+I+++ + L G+ +L+ LN++ + DE +
Sbjct: 3 NLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEIDKFSRLDQLTELNVNWNRLKDEDV 62
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
++ L NL LELS ++ + ++ +S L+ L +++ I + + + LS L L
Sbjct: 63 KSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCL 122
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
N+ IT G+ + L+ LT LD+ G I G Y+ NL+ L L G
Sbjct: 123 NIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGELNNLKILVASDNELGVFGA 182
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
K I +++ LT L L N + ++ + IS LT L L++ + I + G + L L+ L +
Sbjct: 183 KSIGEMNQLTSLCLIGNS-IGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTN 241
Query: 500 LTLESCKVT 508
L + S ++
Sbjct: 242 LDMVSNNIS 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 149/346 (43%), Gaps = 53/346 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +++ +++T G+ + SNL LD + + ++GG +++ L+NL L N
Sbjct: 117 SKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGG-QYIGELNNLKILVASDN 175
Query: 117 -----------------------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
N+I +G K + L L LDL R + G L
Sbjct: 176 ELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTK 235
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L KL +L++ N SD+ + L L L + +K+ D+G
Sbjct: 236 LEKLTNLDMVSNNI---SDLSSIGQLGLLNCLDVRKNKIEDTG----------------- 275
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
IR C L L L L G P+T+ LS + L L+++ + D+G +
Sbjct: 276 ---IRNIC------QLGGLNALRLCGNPITSEGAKILSEMVQLTNLSISETHIDDEGAKF 326
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
+++ +LK L++ IT + + L+ L SL+++ IGDEG++ ++ + L+ L
Sbjct: 327 IAQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNA 386
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+G G + LS + L +++ I ++ L ++ KSL
Sbjct: 387 VYCNIGLEGAKLLSEMEQLTVLDVKIKRIPGEGIQLLENIARFKSL 432
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 6/202 (2%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ NL LN+D I ++ + L+G+ +LK L S +++ S L L +N+++
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+ D ++ + L +L L L +I+ + ++ L+ LT L + I + G + N
Sbjct: 56 RLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
L L I +T GVK I LS+LT+L++S N + + + I L L L S+
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNL-IGAEGGQYIGELNNLKILVASD 174
Query: 481 SRITSAGLRHLKPLKNLRSLTL 502
+ + G + + + L SL L
Sbjct: 175 NELGVFGAKSIGEMNQLTSLCL 196
>gi|168701211|ref|ZP_02733488.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 702
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 121/454 (26%), Positives = 194/454 (42%), Gaps = 34/454 (7%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L LD +F ++ D L+ L L SL R +T GMK A + L LDL R
Sbjct: 195 GLTHLDLSFS-RVGDDDLKLLAAFPKLKSLRLERTQ-VTDAGMKHLAAVEGLEALDLSRL 252
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL- 200
GL L GL L +L + + +T + ++P +G L L +S SKV + +A +
Sbjct: 253 RVTDAGLKELAGLKNLRALTLLFTQ-VTGAGLRPFAG-AGLTHLALSGSKVKAADVADVV 310
Query: 201 --KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
+ L+ +V + + L L +L L+ + + L LS L
Sbjct: 311 ACRALAALAVEGRWPADAV------AQLAGLPELRSLHFQSDLLDGKVLAELSGASKLEA 364
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
++L ++DD + G L + E G + L+L + G
Sbjct: 365 VHL--ATVTDDALAGLRRAGKLHTIPQARAERGRPA-----GPDEVVHLDLSGQPVTGAG 417
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-----ISDGSLRKLAGL 373
L LT NL L L +T+V + G+ L+ L L ++ L G ++ +R+LA L
Sbjct: 418 LKELTVFRNLDTLVLRNTRV-AGGIGALADLRKLSALTLPLYGGDDRAVTPAEMRRLAAL 476
Query: 374 SSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
+L+ L+L + G+A A+ S+ LT L D+ K+LR+L G
Sbjct: 477 DTLEELHLHG--VLVPGMARAVASIPNLTTLS---GTFQDTDLREFPALKHLRALMTGGA 531
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
G+TD G + + L ++LS LTD ++ L L L +S + +T G++ L
Sbjct: 532 GITDEGAWDVARMKRLECVSLSDTRRLTDAGARDLAALPNLKHLCLSRTGVTDEGVQVLA 591
Query: 493 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
+K LR+L L KV + L P LV+
Sbjct: 592 GVKTLRTLWLSEIKVGPAGVAALGRH--PGLVAL 623
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 116/420 (27%), Positives = 192/420 (45%), Gaps = 77/420 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L S+ L + VTD+G+ HL L++LD + ++++D GL+ L GL NL +L+
Sbjct: 218 PKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR-LRVTDAGLKELAGLKNLRALTLLFT 276
Query: 117 NAITAQGMKAFAG--LINL------VKL----DLERCTRIHG----------GLVNLKGL 154
+T G++ FAG L +L VK D+ C + + L GL
Sbjct: 277 Q-VTGAGLRPFAGAGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGL 335
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK------------- 201
+L SL+ + + + + LSG + L+++ ++ VTD +A L+
Sbjct: 336 PELRSLHFQ-SDLLDGKVLAELSGASKLEAVHLAT--VTDDALAGLRRAGKLHTIPQARA 392
Query: 202 ------------------------GLSISSVIFILCSMIIRLFCLHV---FLTSLQKLTL 234
GL +V L ++++R + L L+KL+
Sbjct: 393 ERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAGGIGALADLRKLSA 452
Query: 235 LNL-----EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
L L + VT A + L+AL +L L+L+ L + I +L L+ F
Sbjct: 453 LTLPLYGGDDRAVTPAEMRRLAALDTLEELHLHGV-LVPGMARAVASIPNLTTLSGTFQ- 510
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSG 348
D L L +L +L GI DEG ++ + L+C+ LSDT+ + +G R L+
Sbjct: 511 --DTDLREFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGARDLAA 568
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L NL+ + LS TG++D ++ LAG+ +L++L L ++ G+AAL GL LDL GA
Sbjct: 569 LPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALDLSGA 628
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 45/293 (15%)
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+ +KI ++ + L + T L L L L+L +GD+ L L LK L
Sbjct: 165 EIAKIDNVTYIGLSSSRDTGAKLRALAAAKGLTHLDLSFSRVGDDDLKLLAAFPKLKSLR 224
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L TQV +G++HL+ + LE+++LS ++D L++LAGL +L++L L Q+T GL
Sbjct: 225 LERTQVTDAGMKHLAAVEGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFTQVTGAGLR 284
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-----AGVKHIK---- 443
GLTHL L G+++ + A + + L +L + G D AG+ ++
Sbjct: 285 PFAG-AGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQLAGLPELRSLHF 343
Query: 444 -----------DLSSLTLLNLSQNCNLTDKTLELI-------------------SGLTGL 473
+LS + L +TD L + +G +
Sbjct: 344 QSDLLDGKVLAELSGASKLEAVHLATVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEV 403
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIKRLQSRDLP 521
V L++S +T AGL+ L +NL +L L + +V D+++L + LP
Sbjct: 404 VHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAGGIGALADLRKLSALTLP 456
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 143/333 (42%), Gaps = 23/333 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S S L +V L+ VTD L L+ L ++ + G + + L LS
Sbjct: 357 SGASKLEAVHLA--TVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHLD----LS- 409
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCIT 169
+T G+K NL L L R TR+ GG+ L L KL +L + +T
Sbjct: 410 --GQPVTGAGLKELTVFRNLDTLVL-RNTRVAGGIGALADLRKLSALTLPLYGGDDRAVT 466
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
++M+ L+ L L+ L + V A +++++ +R F +L
Sbjct: 467 PAEMRRLAALDTLEELHLHGVLVPGMARAVASIPNLTTLSGTFQDTDLREF------PAL 520
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN 288
+ L L G +T ++ + L ++L+ + L+D G + + +LK L L
Sbjct: 521 KHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRLTDAGARDLAALPNLKHLCLSRT 580
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+TDE + L G+ L +L L +G G+ L L L+LS G + L+G
Sbjct: 581 GVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALDLSGAPRGEA--EPLAG 638
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
+T LE +NL+ + +L LA L L+ L+L
Sbjct: 639 ITTLEYLNLAGALTGERTLAALAKLPHLRVLHL 671
>gi|290994522|ref|XP_002679881.1| leucine rich repeat protein [Naegleria gruberi]
gi|284093499|gb|EFC47137.1| leucine rich repeat protein [Naegleria gruberi]
Length = 340
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 25/270 (9%)
Query: 250 LSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+ + L +L++ C + DD G + S + L LN+ N I E +L L L +L
Sbjct: 95 IGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLK 154
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
++S IG EG +++ + L L +S+ +G G + +S ++
Sbjct: 155 INSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEIS------------------ 196
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
S L L++ + QI++ GL ++ ++ LT LD G I D GA YL KNLR L+
Sbjct: 197 -----SQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLD 251
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
I + D G I L LT LN+S N + ++ +S + L LN+SN+ I AG
Sbjct: 252 ISKNFVYDNGADLISKLPQLTNLNISFN-EIGNQGAIYLSKMEKLTILNISNNLIGPAGA 310
Query: 489 RHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
++L ++ L L + ++ +++ L +
Sbjct: 311 KYLGEMQQLTKLNINRNYLSVSELALLNKK 340
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 123/237 (51%), Gaps = 2/237 (0%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
+ + +++LT L++ C + +SAL L +LN+++ + +G + SK+ L
Sbjct: 91 FYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQL 150
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVG 339
L + NEI E + + L +LN+ + IG EG +++ + L L++S Q+
Sbjct: 151 TNLKINSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQIS 210
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
+ GL+ +S ++ L S++ + I D + L+ L +L+ L++ + D G ++ L
Sbjct: 211 NEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQ 270
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
LT+L++ I + GA YL + L L I + AG K++ ++ LT LN+++N
Sbjct: 271 LTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRN 327
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 146/341 (42%), Gaps = 35/341 (10%)
Query: 22 EVSLEAFRDCALQDL--CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
E+ E R C QD + Y V+ +WM+VI L + + D L+ +
Sbjct: 16 EIIYEILRSCD-QDFKFIVMNYALVSKQWMNVIQWYSKLELKFEKKREHIDD--LLPSRF 72
Query: 80 CSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
SN+ + F C++ G + + + + LT L R + I +G K + L L L+
Sbjct: 73 LSNI--VQFRVCVERKPGEMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLN 130
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
+ + G L L +L +L I N I K +S + L +L IS + + G
Sbjct: 131 ISQNNIGPEGAKYLSKLDQLTNLKIN-SNEIGPEGAKSISDMKQLTTLNISNNMIGMEGA 189
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
+ +S +LT+L++ ++ L +S + L
Sbjct: 190 KSISEIS-------------------------SQLTILDISSNQISNEGLKFISEMSQLT 224
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L+ N + D G + S++ +L+VL++ N + D + L L +LN+ IG++
Sbjct: 225 SLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNLNISFNEIGNQ 284
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
G + L+ + L L +S+ +G +G ++L + L +N++
Sbjct: 285 GAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNIN 325
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 4/244 (1%)
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
G MK L L+I+ C+ I D K +S L L L IS + + G YL L + + I
Sbjct: 96 GKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLKI 155
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDG 270
+ I + + +++LT LN+ + S+S + S L L+++ Q+S++G
Sbjct: 156 NSNEIGPEGAKSI--SDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEG 213
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ S++ L L+ N I D+ +L L NL L++ + D G ++ L L
Sbjct: 214 LKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTN 273
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L +S ++G+ G +LS + L +N+S I + L + L LN++ ++ +
Sbjct: 274 LNISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRNYLSVSE 333
Query: 391 LAAL 394
LA L
Sbjct: 334 LALL 337
>gi|157865941|ref|XP_001681677.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124975|emb|CAJ02737.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 776
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 127/539 (23%), Positives = 236/539 (43%), Gaps = 47/539 (8%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
+S +F N Y+ L E+ + +R ++DL P + D W SQ
Sbjct: 78 VSVNVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SQLG 132
Query: 58 SLLSVDLSGSDVTDS-----GLI------HLKDC--------------SNLQSLDFNFCI 92
LLSV LSG V+ + GL+ ++DC NLQ L +
Sbjct: 133 GLLSVTLSGCGVSGTLPASWGLMVRLRELTVRDCRHLTGSLPSLWSWLPNLQKLVLR-QL 191
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q+S +++L L IT ++ + +L L+LE T++ G L
Sbjct: 192 QLSGTLPAEWSRVTSLLELEIVAAGDITGTLPPEWSSIKSLRTLNLE-GTQVSGTLP--P 248
Query: 153 GLMKLESL-NIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
G +++SL N++ + P S + +L++L + ++V SG + +S++S+
Sbjct: 249 GWSEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQV--SGSLPPEWVSMASLRT 306
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+ L + ++ LT L LEG V+ S + SL LNL Q+S
Sbjct: 307 LNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSL 366
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
++ + SL+ LNL +++ + +L +LNL+ + + + +L
Sbjct: 367 PPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTS 426
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
LEL TQV + S + +L ++NL T +S + ++SL++LNL+ Q++ T
Sbjct: 427 LELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTL 486
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
+ + LT L+L G +++ + K+LR+L + G ++ + ++SL
Sbjct: 487 PPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRT 546
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
LNL + ++ S + L SL + ++++ +K+LR+L LE +V+
Sbjct: 547 LNL-EGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSG 604
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 112/468 (23%), Positives = 206/468 (44%), Gaps = 38/468 (8%)
Query: 58 SLLSVDLSGSDVT---DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL +++L G+ V+ G +K +NL+ L+ G ++ L L +
Sbjct: 231 SLRTLNLEGTQVSGTLPPGWSEMKSLTNLE-LEGTQVSGTLPPGWSSIKSLRTLNLEGTQ 289
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLE--------SLNI 162
+ ++ + + + +L L+LE T++ G G +K L LE +L
Sbjct: 290 VSGSLPPE----WVSMASLRTLNLE-GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPP 344
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLSISSVIFILCSMIIRLFC 221
+W S+MK L L NL+ Q+S S +A L+ L++
Sbjct: 345 RW------SEMKSLRTL-NLEGTQVSGSLPPQWVSMASLRTLNLEGTQVS--------GS 389
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L S+ L LNLEG V+ S + SL L L Q+S ++S++ SL+
Sbjct: 390 LPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLR 449
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
LNL +++ + +L +LNL+ + + + +L LEL TQV +
Sbjct: 450 TLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGT 509
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
S + +L ++NL T +S + ++SL++LNL+ Q++ T + + LT
Sbjct: 510 LPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLT 569
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L+L G +++ + K+LR+L + G ++ A ++ SLT L L + L+
Sbjct: 570 SLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGALPPGWGEMKSLTNLYL-EGTQLSG 628
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
G+ L +L + ++++ + L +LR+L LE +V+
Sbjct: 629 SLPTEWRGMKSLTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQVSG 676
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 173/403 (42%), Gaps = 28/403 (6%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+++ L L+ + L C + G L GLM +L L ++ C +T S S L NL+
Sbjct: 127 SWSQLGGLLSVTLSGCG-VSGTLPASWGLMVRLRELTVRDCRHLTGSLPSLWSWLPNLQK 185
Query: 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF------------LTSLQKL 232
L L+ L +S + S + L L + +S++ L
Sbjct: 186 L-------------VLRQLQLSGTLPAEWSRVTSLLELEIVAAGDITGTLPPEWSSIKSL 232
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
LNLEG V+ S + SL L L Q+S +S I SL+ LNL +++
Sbjct: 233 RTLNLEGTQVSGTLPPGWSEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSG 292
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+ +L +LNL+ + + + +L LEL TQV + S + +L
Sbjct: 293 SLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSL 352
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
++NL T +S + ++SL++LNL+ Q++ + S+ L L+L G +++
Sbjct: 353 RTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSG 412
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+ K+L SLE+ G ++ ++ SL LNL E +S +
Sbjct: 413 TLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVS-MAS 471
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L +LN+ ++++ +K+L SL LE +V+ R
Sbjct: 472 LRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 514
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 31/295 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL +++L G+ V+ + + +L SL+ Q+S + +L +L+
Sbjct: 398 ASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-G 455
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLE--------SLNIKW 164
++ + + +L L+LE T++ G G +K L LE +L +W
Sbjct: 456 TQVSGSLPPEWVSMASLRTLNLE-GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 514
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLSISSVIFILCSMIIRLFCLH 223
S+MK L L NL+ Q+S S + +A L+ L++ L
Sbjct: 515 ------SEMKSLRTL-NLEGTQVSGSLPPEWVSMASLRTLNLEGTQVS--------GTLP 559
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ ++ LT L LEG V+ S + SL LNL Q+S + ++ SL L
Sbjct: 560 PGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGALPPGWGEMKSLTNL 619
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L +++ +G+ +L +L L+ + + L +L+ L+L TQV
Sbjct: 620 YLEGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQV 674
>gi|254411888|ref|ZP_05025664.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181610|gb|EDX76598.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 415
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 180/331 (54%), Gaps = 41/331 (12%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSI-SSVIFILCSMIIRLFCLHVF 225
SD+ PLS LTNL+SL + +++TD + + LK L++ + I +C
Sbjct: 86 SDLSPLSELTNLESLHLDGNQITDICPLTELTNLKYLTLRRNQITDICP----------- 134
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LT L LT L+LEG + A ++SL+ L +L +LNL Q++ +++ +LK L+L
Sbjct: 135 LTELTNLTELSLEGNQI--ADVNSLAELTNLEFLNLENNQIT--TISPLAELQNLKRLHL 190
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N+ITD + L GL NL L+L+ I D + L+ NLK L L Q+ +
Sbjct: 191 EDNQITD--ISSLAGLQNLTWLHLEDNQITD--ISPLSEFTNLKGLFLVLNQI--KDISP 244
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LS LTNL+++ L F I D + LA L +L L+L+ QITD ++ L+ LT LT L L
Sbjct: 245 LSQLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQITD--ISPLSGLTNLTFLSL 300
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+I D + L NL+ L++ + D + + +L++L L+L+ N +TD +
Sbjct: 301 TYNQIQD--VSPLSGLTNLKRLQLNFNQIQD--ISPLAELTNLETLSLNGN-QITD--VS 353
Query: 466 LISGLTGLVSLNVSNSRITS----AGLRHLK 492
+SGL L +L+++ ++IT +GL +LK
Sbjct: 354 PLSGLQNLNALSLNGNQITDISPLSGLTNLK 384
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 128/273 (46%), Gaps = 52/273 (19%)
Query: 93 QISDGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGL 148
QI+D + L+ LT+L F NN IT + A L NL +L LE + T I
Sbjct: 150 QIAD-----VNSLAELTNLEFLNLENNQITT--ISPLAELQNLKRLHLEDNQITDISS-- 200
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLSISS 207
L GL L L+++ N ITD + PLS TNLK L + +++ D S ++ L L
Sbjct: 201 --LAGLQNLTWLHLE-DNQITD--ISPLSEFTNLKGLFLVLNQIKDISPLSQLTNLKALE 255
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
+ F I L LQ LT L+LE +T + LS L +L +L+L Q+
Sbjct: 256 LKFNQIQDISPL-------AELQNLTWLDLEDNQITD--ISPLSGLTNLTFLSLTYNQIQ 306
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNL- 322
D S + +LK L L FN+I D + L LTNLE+L+L+ I D GL NL
Sbjct: 307 D--VSPLSGLTNLKRLQLNFNQIQD--ISPLAELTNLETLSLNGNQITDVSPLSGLQNLN 362
Query: 323 ---------------TGLCNLKCLELSDTQVGS 340
+GL NLK L L++ + S
Sbjct: 363 ALSLNGNQITDISPLSGLTNLKVLHLTENPIFS 395
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
ELS + S L LS LTNLES++L I+D + L L++LK L L QITD +
Sbjct: 77 ELSLNRQEISDLSPLSELTNLESLHLDGNQITD--ICPLTELTNLKYLTLRRNQITD--I 132
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
LT LT LT L L G +I D + L NL L + +T + + +L +L L
Sbjct: 133 CPLTELTNLTELSLEGNQIADVNS--LAELTNLEFLNLENNQIT--TISPLAELQNLKRL 188
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+L N +TD + ++GL L L++ +++IT + L NL+ L L
Sbjct: 189 HLEDN-QITD--ISSLAGLQNLTWLHLEDNQIT--DISPLSEFTNLKGLFL 234
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 102/229 (44%), Gaps = 49/229 (21%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +TD + L + +NL+ L F QI D + L L+NL +L + N Q
Sbjct: 212 LEDNQITD--ISPLSEFTNLKGL-FLVLNQIKD--ISPLSQLTNLKALELKFNQI---QD 263
Query: 124 MKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ A L NL LDLE + T I L GL L L++ + D+ PLSGLTN
Sbjct: 264 ISPLAELQNLTWLDLEDNQITDISP----LSGLTNLTFLSLTYNQI---QDVSPLSGLTN 316
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
LK LQ++ +++ D IS L L L L+L G
Sbjct: 317 LKRLQLNFNQIQD----------ISP------------------LAELTNLETLSLNGNQ 348
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+T LS L +L L+LN Q++D S + +LKVL+L N I
Sbjct: 349 ITDVS--PLSGLQNLNALSLNGNQITD--ISPLSGLTNLKVLHLTENPI 393
>gi|290974572|ref|XP_002670019.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083573|gb|EFC37275.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 334
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 3/207 (1%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++ + L L +SD +G G++ +S L L S+N+S I D ++ ++ L L SL++
Sbjct: 131 ISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDI 190
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
I G+ +++ + LT L++ RI D G + K L SL I G+ D GVK
Sbjct: 191 SLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKL 250
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
I ++ LT LN+S N + D+ ++ IS L L SLN+SN+RI + G + + +K L SL+
Sbjct: 251 ISEMKQLTSLNISNNG-IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLS 309
Query: 502 LESCKVTANDIKRLQSRDLPNLVSFRP 528
+ ++ +K + D+ L S
Sbjct: 310 INYNQIGDEGVKSI--SDMKQLTSLNK 334
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 1/200 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SL + GIGDEG+ ++ L L L +S+ ++G G++ +S L L S+++S
Sbjct: 134 MKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLN 193
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I ++ ++ + L SLN++ +I D G+ ++ L LT L++ I D G +
Sbjct: 194 DIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISE 253
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L SL I G+ D GVK I +L LT LN+S N + + + IS + L SL+++
Sbjct: 254 MKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNN-RIGAEGAKSISEMKQLTSLSINY 312
Query: 481 SRITSAGLRHLKPLKNLRSL 500
++I G++ + +K L SL
Sbjct: 313 NQIGDEGVKSISDMKQLTSL 332
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 4/237 (1%)
Query: 217 IRLFCLHVFLTSLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
I LF F+ S+ + L G A + + L SL ++ + D+G + S
Sbjct: 100 IELFMNSQFMNSIVNVKFSAWLFGSIEKAKFISEMKQLTSLI---ISDNGIGDEGVKLIS 156
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
++ L LN+ N I DE + + L L SL++ IG EG+ +++ + L L ++
Sbjct: 157 ELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSISEMKQLTSLNINY 216
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++G G++ +S L L S+N+S GI D ++ ++ + L SLN+ I D G+ +++
Sbjct: 217 NRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKSIS 276
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L LT L++ RI GA + K L SL I + D GVK I D+ LT LN
Sbjct: 277 ELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSISDMKQLTSLN 333
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 2/206 (0%)
Query: 273 KF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
KF S++ L L + N I DE + + L L SLN+ + IGDEG+ ++ L L L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
++S +G+ G++ +S + L S+N+++ I D ++ ++ L L SLN+ I D G+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
++ + LT L++ I D G + K L SL I + G K I ++ LT L
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLN 477
+++ N + D+ ++ IS + L SLN
Sbjct: 309 SINYN-QIGDEGVKSISDMKQLTSLN 333
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ +S + L S+ +S GI D ++ ++ L L SLN+ +I D G+ ++ L LT L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
D+ I G + K L SL I + D GVK I +L LT LN+S N + D+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNG-IGDEG 247
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
++LIS + L SLN+SN+ I G++ + LK L SL + + ++ A K +
Sbjct: 248 VKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSI 299
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +D+ G+ + + L SL+ N+ +I D G++ + L LTSL+
Sbjct: 180 SELKQLTSLDISLNDIGAEGVKSISEMKQLTSLNINYN-RIGDEGVKLISELKQLTSLNI 238
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + + L L++ G+ ++ L +L SLNI N I
Sbjct: 239 S-NNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNIS-NNRIGAEGA 296
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL 200
K +S + L SL I+ +++ D G+ +
Sbjct: 297 KSISEMKQLTSLSINYNQIGDEGVKSI 323
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 54/242 (22%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ + +I S+ L S+++S + + D G+ + + L SLD +
Sbjct: 146 GIGDEGVKLI-SELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISL------------ 192
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
N I A+G+K+ + + L L++ G+ + L +L SLNI
Sbjct: 193 --------------NDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNI 238
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
N I D +K +S + L SL IS + + D G+
Sbjct: 239 S-NNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKS----------------------- 274
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
++ L++LT LN+ + A S+S + L L++N Q+ D+G + S + L
Sbjct: 275 ---ISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSISDMKQLTS 331
Query: 283 LN 284
LN
Sbjct: 332 LN 333
>gi|242089917|ref|XP_002440791.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
gi|241946076|gb|EES19221.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
Length = 608
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 132/551 (23%), Positives = 229/551 (41%), Gaps = 112/551 (20%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ +F L R L LE F +++++ L + V+ +W+ + S +
Sbjct: 44 LPAPLADALFRRLAARRLLFPSLLEVFSR-SVEEVDLSGFLSVDAEWLAYLGSFRFLRVL 102
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ + + L + L+ LD + C +ISD G++H+ + +L L +T
Sbjct: 103 TLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTN 161
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ + L NL LDL GG++ +TD ++ L LT
Sbjct: 162 NGVMLISSLTNLSFLDL-------GGIL------------------MTDKSLQSLQVLTR 196
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL------L 235
L+ L I S+ T+ G + LK + RL L++ LT + L++ L
Sbjct: 197 LEHLDIWGSETTNEGASTLKSFA-------------RLIFLNLALTRVNHLSIPPTTRCL 243
Query: 236 NLEGCPVTAAC-------------LDSLSALG------------SLFYLNLNRCQLSDDG 270
N+ C + + C + S + G SL +L+L+ C+LS+
Sbjct: 244 NMSNCEIHSICDEDSEVPVPLENFIVSAATFGNIDKVFSSIQASSLTHLDLSSCKLSN-- 301
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTG-LCNL 328
K+ +L+ L+L +N ITD + H+ L TNL+ L+L + GI + L L G + NL
Sbjct: 302 LSFLEKMKNLEHLDLSYNIITDGAIEHIAKLGTNLQYLSLKNTGITSQALCILAGTVPNL 361
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L++T++ S L ++ + L +I+LS T I +L L
Sbjct: 362 TSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGCALENKFYL--------------- 406
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+ G TH+ F + K L SL + L+ + + L++L
Sbjct: 407 --------MAGFTHMSAF------------EHLKYLESLNLEDTPLSAEVIPPLASLAAL 446
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV- 507
L L + L+D L +S + L+ L + ++S+GL P L L L C +
Sbjct: 447 KYLYLKSDF-LSDPALHALSAASNLIHLGFCGNILSSSGLLQFVPPTTLCVLDLSGCWIL 505
Query: 508 TANDIKRLQSR 518
T I + R
Sbjct: 506 TGEAISTFRKR 516
>gi|386333663|ref|YP_006029833.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334196112|gb|AEG69297.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 629
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 150/511 (29%), Positives = 224/511 (43%), Gaps = 56/511 (10%)
Query: 2 LPRDISQQIFNEL--VYSRCLTEVSLE------------AFRDCALQDLCLGQYPGVNDK 47
LP ++ QQI + R + EV+ E R+ A+ LG+YP +
Sbjct: 91 LPPELWQQIGSSAGARPRRAMREVNRELRNASRAVVTHLTIRNPAMFG-QLGKYPALKSV 149
Query: 48 W------MDVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
++ + + + +D+S GS V+++GL L L+SL N I+I G
Sbjct: 150 RFKGALTLEALKALPPGVEHLDISRCTGSGVSNAGLALLA-TRPLKSLSLN-GIEIDAEG 207
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L ++LTSLS +I + A A ++ LDL G L G L
Sbjct: 208 ARLLATCTSLTSLSLT-GCSIGDRAATALARSRSIASLDLSVNMIGPDGARALAG-APLA 265
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
SLN+ N I D L+ LKSL S + + D+G+ G + ++V
Sbjct: 266 SLNLH-NNGIGDEGALALATSGTLKSLNASNNGIGDAGVL---GFADNAV---------- 311
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
LT LNL G + A +L SL L+L+ +L D G + +
Sbjct: 312 -------------LTQLNLAGNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANR 358
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
SL LNL NEI D+ L T L+SLNL IG G L G L+ L+L +
Sbjct: 359 SLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAI 418
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G L+ T+L S++L I D R +A +L L+L I D G AL
Sbjct: 419 DPYGASALARNTSLASLHLGSNRIGDSGARAIATSRTLTLLDLSRNNIHDAGAQALAGNG 478
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
LT L+L+G + D GAA L + L SL + + G +H+ ++LT L+LS+N
Sbjct: 479 SLTSLNLYGNEVDDDGAAALAHHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-R 537
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ + + +S T L +LNVS++ I G R
Sbjct: 538 IGPEGADALSLSTVLTTLNVSDNAIGEKGAR 568
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 176/401 (43%), Gaps = 15/401 (3%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---- 167
S R A+T + +KA + LD+ RCT G V+ GL L + +K +
Sbjct: 148 SVRFKGALTLEALKALP--PGVEHLDISRCT---GSGVSNAGLALLATRPLKSLSLNGIE 202
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
I + L+ T+L SL ++ CS + A + SI+S + + +MI +
Sbjct: 203 IDAEGARLLATCTSLTSLSLTGCSIGDRAATALARSRSIAS-LDLSVNMIGPDGARALAG 261
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
L L L N G A +L+ G+L LN + + D G F+ L LNL
Sbjct: 262 APLASLNLHN-NGIGDEGAL--ALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLA 318
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
N I L+ T+L L+L + +GD G L +L L L ++G G L
Sbjct: 319 GNMIGPAGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEAL 378
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+ T L+S+NLS+ I L G ++L+ L+L I G +AL T L L L
Sbjct: 379 ARNTTLKSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLG 438
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
RI DSGA + + L L++ + DAG + + SLT LNL N + D
Sbjct: 439 SNRIGDSGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGN-EVDDDGAAA 497
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
++ L SLN+ +RI G +HL L L L ++
Sbjct: 498 LAHHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRI 538
>gi|300691489|ref|YP_003752484.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078549|emb|CBJ51205.2| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum PSI07]
Length = 533
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 176/375 (46%), Gaps = 17/375 (4%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L +LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 141 LTELDLSRCR----GPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANHPTLTSLDVS 196
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLE--GCPVTAA 245
++ G + L+ ++ + L R+ L + + LT L++ G A
Sbjct: 197 NGRIGPEGA---RALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGA 253
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
C +L+ L LN+NR ++ +G + + +L L++G N+I DE + L L
Sbjct: 254 C--ALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLT 311
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+LN++ +G +G+ L L L + +G +G R L+ T+L ++++ GIS
Sbjct: 312 TLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPA 371
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
+ LA ++L +LNL I D G A ++ T L L + ++D+GA L K +
Sbjct: 372 GAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMT 431
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
+L+ + DAG + + +LT L++ N + + ++ T L SL++ N+R+T
Sbjct: 432 TLDAGDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTWLASLDLRNNRVTE 490
Query: 486 AGLRHLKPLKNLRSL 500
AG+R L + L SL
Sbjct: 491 AGVRALLANRTLSSL 505
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 124/443 (27%), Positives = 200/443 (45%), Gaps = 35/443 (7%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
RR+ + Q ++A + L V+ D+ + R GL +K LE L +
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129
Query: 169 TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLSISSVIFILCSMII---RLFCLH 223
TD+D++ L +L L +S C +T +GIA+L L + + + + RL H
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANH 187
Query: 224 VFLTSLQ------------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
LTSL +LT L++ + A +L+A +L L+++
Sbjct: 188 PTLTSLDVSNGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENG 247
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ D+G + L LN+ N I E L L SL++ IGDEG+ L
Sbjct: 248 IGDEGACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAAN 307
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L + T+VG+ G+ L+ L S+ + I D R LA +SL +L++++
Sbjct: 308 ARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNG 367
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
I+ G AL + T LT L+L I D+GA L SL + GL+DAG +
Sbjct: 368 ISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAAS 427
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
++T L+ N + D ++ L +L+V ++ I +AG R L L SL L +
Sbjct: 428 KTMTTLDAGDNT-IRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNN 486
Query: 506 KVTANDIKR-LQSRDLPNL-VSF 526
+VT ++ L +R L +L VSF
Sbjct: 487 RVTEAGVRALLANRTLSSLGVSF 509
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 171/387 (44%), Gaps = 10/387 (2%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L LD + C I+ G+ HL L L L+ R + I +G + A L LD+
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHLSHLP-LVRLNVR-DQRIGVEGARLLANHPTLTSLDVS 196
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L +L +L++ N I K L+ L SL IS + + D G
Sbjct: 197 NGRIGPEGARALADNTRLTTLSVS-HNRIGAEGAKALAASETLTSLDISENGIGDEGAC- 254
Query: 200 LKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L+ ++ + L R+ L + + LT L++ G + + +L+A L
Sbjct: 255 --ALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTT 312
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
LN+ R ++ DG + +L L + N I D L T+L +L+++S GI G
Sbjct: 313 LNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAG 372
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L L L L +G +G + S T L S+++ G+SD LA ++ +
Sbjct: 373 AQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTT 432
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L+ I D G AL + LT LD+ I ++GA L L SL++ +T+AG
Sbjct: 433 LDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAG 492
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLE 465
V+ + L++ TL +L + N K E
Sbjct: 493 VRAL--LANRTLSSLGVSFNYCSKPTE 517
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 5/235 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ S T L SL + + ++D+G L S + IR L + + LT
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATILAA-SKTMTTLDAGDNTIRDAGARA-LAANRTLT 455
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L++ + A +L+A L L+L ++++ G +L L + FN
Sbjct: 456 TLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRALLANRTLSSLGVSFN 510
>gi|290974952|ref|XP_002670208.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083764|gb|EFC37464.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 252
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 121/236 (51%), Gaps = 1/236 (0%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
Q+ +G + S++ L LN+ NEI D+ + G+ L SLN+ S G+EG +++
Sbjct: 13 QVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNIGSNKFGNEGAKSISE 72
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ L L + Q+G G++ +S + L S+++ + GI ++ + L SL++
Sbjct: 73 MKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGANSISEMKQLTSLDICLN 132
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
QI D G +++ L LT L + +I D GA + K L SL I + G + I +
Sbjct: 133 QIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISE 192
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
L LT L S N + + ++ IS + L SL++ N+RI + G+ L L +L+ L
Sbjct: 193 LKQLTSLAASAN-QIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFL 247
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 111/226 (49%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ +++LT LN+ + + +S + L LN+ + ++G + S++ L VL +
Sbjct: 22 ISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNIGSNKFGNEGAKSISEMKQLTVLYI 81
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G N+I DE + + + L S+++ GIG +G +++ + L L++ Q+G G +
Sbjct: 82 GLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGANSISEMKQLTSLDICLNQIGDEGAKS 141
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S L L + +S I D + ++ L L SL + A QI G +++ L LT L
Sbjct: 142 ISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISELKQLTSLAA 201
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
+I G ++ K L SL+I + GV + L+SL L
Sbjct: 202 SANQIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFL 247
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 116/249 (46%), Gaps = 18/249 (7%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
+C Q+ G + + + LTSL+ NN I +G +G+ L L++ + G
Sbjct: 10 YCNQVGVEGAKSISEMKQLTSLNIS-NNEIGDKGANFISGMKQLTSLNIGSNKFGNEGAK 68
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
++ + +L L I N I D +K +S + L S+ I C +GI +KG + S +
Sbjct: 69 SISEMKQLTVLYI-GLNQIGDEGVKFISEMKRLTSVDI-CY----NGIG-VKGANSISEM 121
Query: 210 FILCSMIIRLFCLHVF-------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
L S+ I CL+ ++ L++LTLL + + S+S L L L ++
Sbjct: 122 KQLTSLDI---CLNQIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAIS 178
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
Q+ G E S++ L L N+I E + + + L SL++ + IG EG+ L
Sbjct: 179 ANQIGVKGAESISELKQLTSLAASANQIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLL 238
Query: 323 TGLCNLKCL 331
T L +LK L
Sbjct: 239 TSLTSLKFL 247
>gi|290972196|ref|XP_002668843.1| predicted protein [Naegleria gruberi]
gi|284082373|gb|EFC36099.1| predicted protein [Naegleria gruberi]
Length = 348
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 132/245 (53%), Gaps = 13/245 (5%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+ + SK+ +LK LN+ N I +E L+ + L NL +LN+++ IGDEG+ +++ L NL
Sbjct: 8 NDVQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNL 67
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLRKLAGLSSLKSLNLDARQI 386
L + + S G + +S LTNL S+N++ + S+ +L S N QI
Sbjct: 68 TNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNL----------SRNNITHQI 117
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
+ G+ ++ +L LT+L++ I D G + NL +L+I + D G+K I +L
Sbjct: 118 ENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLI 177
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
+LT LN+ QN ++ D+ ++ IS L L +L++ ++I G + + L NL L +
Sbjct: 178 NLTNLNI-QNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTKLVCWNTD 236
Query: 507 VTAND 511
+ N+
Sbjct: 237 IATNN 241
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 122/254 (48%), Gaps = 36/254 (14%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
++ + L NL +L+ NN I +G+ LINL L++E G+ ++ L+ L
Sbjct: 10 VQDISKLVNLKTLNISINN-IGNEGLIIVCNLINLTNLNIENNDIGDEGVQDISKLVNLT 68
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
+LNIK N + + +S LTNL SL ++ + V S K LS +++
Sbjct: 69 NLNIK-SNALRSKGAQEISKLTNLTSLNVAENNVMLSE----KNLSRNNITH-------- 115
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
+ + S+ L +L LN+ + D+G + SK+
Sbjct: 116 ----------------------QIENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLI 153
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L L++G N+I DE + + L NL +LN+ + IGDEG+ +++ L NL L++ T++
Sbjct: 154 NLTNLDIGNNKIRDEGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDICQTKI 213
Query: 339 GSSGLRHLSGLTNL 352
G +G + + L NL
Sbjct: 214 GDNGAKEICKLINL 227
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 108/210 (51%), Gaps = 23/210 (10%)
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
+ + ++G+ ++ +S L NL+++N+S I + L + L +L +LN++ I D G+
Sbjct: 1 MENNKIGND-VQDISKLVNLKTLNISINNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQ 59
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG----------------LTD 436
++ L LT+L++ + GA + NL SL + + +
Sbjct: 60 DISKLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQIEN 119
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
G+K I +L +LT LN+ QN ++ D+ ++ IS L L +L++ N++I G++ + L N
Sbjct: 120 DGIKSIFNLINLTNLNI-QNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLIN 178
Query: 497 LRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
L +L +++ NDI +D+ L++
Sbjct: 179 LTNLNIQN-----NDIGDEGVQDISKLINL 203
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 40/236 (16%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF----- 225
+D++ +S L NLK+L IS + + + G+ I+C++I L L++
Sbjct: 8 NDVQDISKLVNLKTLNISINNIGNEGL------------IIVCNLI-NLTNLNIENNDIG 54
Query: 226 ------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--------------- 264
++ L LT LN++ + + +S L +L LN+
Sbjct: 55 DEGVQDISKLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNIT 114
Query: 265 -QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
Q+ +DG + + +L LN+ N+I DE + + L NL +L++ + I DEG+ ++
Sbjct: 115 HQIENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIF 174
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
L NL L + + +G G++ +S L NL ++++ T I D +++ L +L L
Sbjct: 175 NLINLTNLNIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTKL 230
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 17/161 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++++ +D+ D G+ + NL +L+ S G E + L+NLTSL+ NN
Sbjct: 42 NLTNLNIENNDIGDEGVQDISKLVNLTNLNIKSNALRSKGAQE-ISKLTNLTSLNVAENN 100
Query: 118 A-----------ITAQ----GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
IT Q G+K+ LINL L+++ G+ ++ L+ L +L+I
Sbjct: 101 VMLSEKNLSRNNITHQIENDGIKSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDI 160
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
N I D +K + L NL +L I + + D G+ + L
Sbjct: 161 -GNNKIRDEGIKSIFNLINLTNLNIQNNDIGDEGVQDISKL 200
>gi|414878156|tpg|DAA55287.1| TPA: hypothetical protein ZEAMMB73_170021 [Zea mays]
Length = 663
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 234/503 (46%), Gaps = 58/503 (11%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L + L+ L + C+
Sbjct: 111 RSVCLARANGVGWRGLEALVAACPKLEAVDLSHCVSAGDREAAALAAAAGLRELRLDKCL 170
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 171 AVTDMGLAKVAVGCPRLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLRS 230
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSV 208
+ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G+A L I
Sbjct: 231 ISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSHGLASL----IDGR 286
Query: 209 IFILCSMIIRLFCLHV----FLTSL----QKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
F+ + CLH F++ L + LT L L+G V+ + L+++
Sbjct: 287 NFL--QKLYAADCLHEIGQRFVSKLATLKETLTTLKLDGLEVSDSLLEAIG--------- 335
Query: 261 LNRCQLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-D 316
+ C K +IG K V + G + + C ++L +++L C + +
Sbjct: 336 --------ESCNKLVEIGLSKCSGVTDEGISSLVARC-------SDLRTIDLTCCNLSTN 380
Query: 317 EGLVNLTGLCN-LKCLEL-SDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGL 373
L ++ G C L+CL L S + + GL+ ++ NL+ I+L+ G+ D +L LA
Sbjct: 381 NALDSIAGNCKMLECLRLESCSLINEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKC 440
Query: 374 SSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEI 429
S L+ L L I+D G+A ++S G L LDL+ + ITD G A L N K ++ L +
Sbjct: 441 SELRVLKLGLCSSISDKGIAFISSNCGKLVELDLYRCSSITDDGLAALANGCKRIKLLNL 500
Query: 430 C-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSA 486
C +TD G+ H+ L LT L L +T + ++ G L+ L++ + A
Sbjct: 501 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIELDLKRCYSVDDA 560
Query: 487 GLRHLKPLK-NLRSLTLESCKVT 508
GL L NLR LT+ C+VT
Sbjct: 561 GLWALARYALNLRQLTISYCQVT 583
>gi|116621127|ref|YP_823283.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
gi|116224289|gb|ABJ82998.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
Length = 248
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 122/250 (48%), Gaps = 17/250 (6%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
Q+ D K L+ L + IT++ L + +T L + L + D LV+L
Sbjct: 13 QVDDALWRKLESRRDLEELVIWGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQP 72
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNL 381
L L+CL L+ T V R L T L + L TG D R LA +L+ + +
Sbjct: 73 LRELECLNLAYTGVTGDFTRLLG--TPLRDVRLEGCRRTG--DACARSLARFPTLRQVEM 128
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+TD GLAA+ +L + G RITD G + F NLR L+IC +TD GV+
Sbjct: 129 HMTGLTDDGLAAMAALP--LEVLWLGPRITDRGMETIGGFANLRHLDICTHLITDEGVRA 186
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+ L L +L L+++ ++D ++E++S TGL LNV+ + IT+ GL LK L
Sbjct: 187 LAGLQQLQVLWLTRS-RVSDASIEVLSQFTGLRELNVNYTEITAQGLARLK-------LA 238
Query: 502 LESCKVTAND 511
L C++ D
Sbjct: 239 LPECRLVEPD 248
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 50/255 (19%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
L+ LE L I W IT+ ++P+S +T L + + V D + +L+ L
Sbjct: 21 KLESRRDLEELVI-WGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLR----- 74
Query: 210 FILCSMIIRLFCLHVFLTSLQ---------KLTLLNLEGCPVTA-ACLDSLSALGSLFYL 259
L CL++ T + L + LEGC T AC SL+ +L +
Sbjct: 75 --------ELECLNLAYTGVTGDFTRLLGTPLRDVRLEGCRRTGDACARSLARFPTLRQV 126
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
++ L+DDG + + L+VL LG I D G+
Sbjct: 127 EMHMTGLTDDGLAAMAAL-PLEVLWLGPR-------------------------ITDRGM 160
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+ G NL+ L++ + G+R L+GL L+ + L+ + +SD S+ L+ + L+ L
Sbjct: 161 ETIGGFANLRHLDICTHLITDEGVRALAGLQQLQVLWLTRSRVSDASIEVLSQFTGLREL 220
Query: 380 NLDARQITDTGLAAL 394
N++ +IT GLA L
Sbjct: 221 NVNYTEITAQGLARL 235
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 9/197 (4%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVL 283
++ + LT + L PV L L L L LNL ++ D F+++ L+ +
Sbjct: 46 VSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECLNLAYTGVTGD----FTRLLGTPLRDV 101
Query: 284 NL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L G D C L L + + G+ D+GL + L L+ L L ++ G
Sbjct: 102 RLEGCRRTGDACARSLARFPTLRQVEMHMTGLTDDGLAAMAAL-PLEVLWLG-PRITDRG 159
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ + G NL +++ I+D +R LAGL L+ L L +++D + L+ TGL
Sbjct: 160 METIGGFANLRHLDICTHLITDEGVRALAGLQQLQVLWLTRSRVSDASIEVLSQFTGLRE 219
Query: 403 LDLFGARITDSGAAYLR 419
L++ IT G A L+
Sbjct: 220 LNVNYTEITAQGLARLK 236
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +GM+ G NL LD+ CT + G+ L GL +L+ L + + ++D+ ++ L
Sbjct: 155 ITDRGMETIGGFANLRHLDI--CTHLITDEGVRALAGLQQLQVLWLT-RSRVSDASIEVL 211
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S T L+ L ++ +++T G+A LK
Sbjct: 212 SQFTGLRELNVNYTEITAQGLARLK 236
>gi|320166208|gb|EFW43107.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1869
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 189/425 (44%), Gaps = 21/425 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + S L + L+ LD N QI+ GL+ L +L + NN I A
Sbjct: 288 SAIPSSAFTGLTALTQLR-LDTN---QITTVPSSAFTGLTALQTL-YLYNNQIITVATNA 342
Query: 127 FAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDSDMKPLSGLTNL 182
F+GL + +++LD + T + GL L +L + W + I S +GLT L
Sbjct: 343 FSGLAALQVLRLDTNQITTVPANA--FSGLSALNTLQLSNNWLSAIPSSA---FTGLTAL 397
Query: 183 KSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLTLLNLEGC 240
LQ+ +++T + GL+ +++ + I + ++ F LT+L +L L N +
Sbjct: 398 TQLQLYNNQITTVPSSAFTGLTALQTLYLYNNQIATV-AINAFSGLTALVQLYLYNNQ-- 454
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+T+ ++ S L L L LN LS F+ + +L L L N+IT G
Sbjct: 455 -ITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTG 513
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT L+ L L + I + +GL L L L Q+ + SGL+ L +++L
Sbjct: 514 LTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNN 573
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+S GL++L L LD QIT A + LT L +L L+ +IT A
Sbjct: 574 WLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSG 633
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
L L++ G +T + LS+LT L L N +T SGLT L L + N
Sbjct: 634 LTALVQLQLYGNQITTIPSSALTGLSALTQLLLYNN-RITSVPANGFSGLTALTDLRLFN 692
Query: 481 SRITS 485
+ ITS
Sbjct: 693 NTITS 697
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 120/435 (27%), Positives = 182/435 (41%), Gaps = 38/435 (8%)
Query: 104 GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
G S LT+L+ R NN IT+ AF GL L LDL + T I G GL L
Sbjct: 678 GFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGA--FSGLTALTQ 735
Query: 160 LNI--KWC---------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L + W N IT +GLT L LQ+ +++T
Sbjct: 736 LLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTIS 795
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
+ G+S +++ + I +F ++ F T L L+LL++ +T+ ++ + L ++
Sbjct: 796 ASAFAGMSSLVQLYLYSNRITAIF-VNAF-TGLTHLSLLDISNNQITSLPANAFTGLTAM 853
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
L+L LS F+ + +L+ L L N+IT + LT L L L I
Sbjct: 854 TQLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYGNQITT 913
Query: 317 EGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+GL L L+L++ + + SS L+ LT L+ N T + + GL
Sbjct: 914 IPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFT---GL 970
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
++L L+L QIT +A LT L L L IT A L L++ G
Sbjct: 971 TALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLSGSQ 1030
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+T L +L LNL N L+ +GLT L L + +RIT+
Sbjct: 1031 ITSIPANVFSSLPALAQLNLYNNW-LSAVPTSAFTGLTALTQLTMYGNRITTISANAFTG 1089
Query: 494 LKNLRSLTLESCKVT 508
L L L L+S ++T
Sbjct: 1090 LNALVQLFLQSNQIT 1104
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 178/420 (42%), Gaps = 37/420 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ L +L + NN I + AF+GL LV+L L + T I
Sbjct: 118 QITTVPSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANA-- 174
Query: 151 LKGLMKLESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
GL KL +L N W + I S +GLT L L + +++T + GL
Sbjct: 175 FSGLSKLNTLQLNNNWLSAIPSSA---FTGLTALTQLLLYNNQITTVPSSAFTGL----- 226
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
T+LQ L L N + + +++ S L +L L L+ Q++
Sbjct: 227 ------------------TALQTLYLYNNQ---IATVAINAFSGLTALVQLRLDTNQITT 265
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
FS + L L+L N ++ GLT L L LD+ I TGL L
Sbjct: 266 VPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPSSAFTGLTAL 325
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
+ L L + Q+ + SGL L+ + L I+ +GLS+L +L L ++
Sbjct: 326 QTLYLYNNQIITVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSALNTLQLSNNWLSA 385
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+A T LT LT L L+ +IT ++ L++L + + + L++L
Sbjct: 386 IPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTAL 445
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L L N +T + SGL+ L +L ++N+ +++ L L L L + ++T
Sbjct: 446 VQLYLYNN-QITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQIT 504
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 154/365 (42%), Gaps = 6/365 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
QI+ GL+ L L N IT AFAG+ +LV+L L RI VN
Sbjct: 766 QITTVAANAFTGLTALVQLQLYGNQ-ITTISASAFAGMSSLVQLYL-YSNRITAIFVNAF 823
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
GL L L+I N IT +GLT + L + + ++ + GL+ +++
Sbjct: 824 TGLTHLSLLDIS-NNQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL 882
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
+ I + ++ F TSL L L L G +T + S L L L LN LS
Sbjct: 883 YNNQITSV-VVNAF-TSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPS 940
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
F+ + +L L L N+IT GLT L L+L I GL L+ L
Sbjct: 941 SAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQAL 1000
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
L++ + + +GLT L ++LS + I+ + L +L LNL ++
Sbjct: 1001 YLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPT 1060
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
+A T LT LT L ++G RIT A L L + +T LS LT L
Sbjct: 1061 SAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQITTISASAFTGLSLLTQL 1120
Query: 452 NLSQN 456
LS N
Sbjct: 1121 YLSNN 1125
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 181/401 (45%), Gaps = 20/401 (4%)
Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN IT AF+GL LV+L L + T I L GL L L + + N IT
Sbjct: 620 NNQITTVPANAFSGLTALVQLQLYGNQITTIPSSA--LTGLSALTQL-LLYNNRITSVPA 676
Query: 174 KPLSGLTNLKSLQISCSKVTD------SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
SGLT L L++ + +T +G+ L L +S + L S+ F LT
Sbjct: 677 NGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLS--LNQLTSIPAGAFS---GLT 731
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+L +L L N V ++ L+AL L+ N Q++ F+ + +L L L
Sbjct: 732 ALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYN---NQITTVAANAFTGLTALVQLQLYG 788
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N+IT G+++L L L S I + TGL +L L++S+ Q+ S +
Sbjct: 789 NQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNNQITSLPANAFT 848
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
GLT + ++L +S GL++L++L L QIT + A TSLT L L L+G
Sbjct: 849 GLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTSLTALVQLQLYG 908
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+IT A+ L L++ L+ L++LT L L N +T
Sbjct: 909 NQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLYNN-QITTVPSSAF 967
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+GLT L L++ ++IT+ L L++L L + +T
Sbjct: 968 TGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTIT 1008
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 16/376 (4%)
Query: 116 NNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN IT AF GL LV+L L + T I G+ L L + + N IT +
Sbjct: 764 NNQITTVAANAFTGLTALVQLQLYGNQITTISASA--FAGMSSLVQLYL-YSNRITAIFV 820
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI----LCSMIIRLFCLHVFLTSL 229
+GLT+L L IS +++T GL+ + + + L ++ F LT+L
Sbjct: 821 NAFTGLTHLSLLDISNNQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFT---GLTAL 877
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
Q L L N + +T+ +++ ++L +L L L Q++ FS + L +L L N
Sbjct: 878 QALWLYNNQ---ITSVVVNAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNW 934
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
++ GLT L L L + I TGL L L L Q+ + +GL
Sbjct: 935 LSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGL 994
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
T L+++ L+ I+ + AGL++L L+L QIT +SL L L+L+
Sbjct: 995 TALQALYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNW 1054
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
++ + L L + G +T L++L L L N +T + +G
Sbjct: 1055 LSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSN-QITTISASAFTG 1113
Query: 470 LTGLVSLNVSNSRITS 485
L+ L L +SN++IT+
Sbjct: 1114 LSLLTQLYLSNNQITT 1129
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 140/543 (25%), Positives = 224/543 (41%), Gaps = 65/543 (11%)
Query: 20 LTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVTDSGL 74
+T V AF AL L L ++ W+ I S ++L + L + +T
Sbjct: 359 ITTVPANAFSGLSALNTLQL------SNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPS 412
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--IN 132
+ LQ+L + + QI+ + GL+ L L + NN IT+ AF+GL +N
Sbjct: 413 SAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQL-YLYNNQITSISANAFSGLSKLN 470
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
++L+ + I GL L L + + N IT +GLT L+ L + +++
Sbjct: 471 TLQLNNNWLSAIPSSA--FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQI 527
Query: 193 TDSGIAYLKGLS-----------ISSVIFILCSMIIRLFCLHVF-----------LTSLQ 230
I GL+ I++V S + +L LH++ T L
Sbjct: 528 ATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLT 587
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
LT L L+ +T ++ S L +L YL L Q++ FS + +L L L N+I
Sbjct: 588 ALTQLRLDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQI 647
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
T L GL+ L L L + I +GL L L L + + S +GLT
Sbjct: 648 TTIPSSALTGLSALTQLLLYNNRITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLT 707
Query: 351 NLESINLS---FTGISDGSLRKLAGLSSLKSLN--LDA-------------------RQI 386
L ++LS T I G+ L L+ L N L A QI
Sbjct: 708 KLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQI 767
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
T A T LT L L L+G +IT A+ +L L + +T V L+
Sbjct: 768 TTVAANAFTGLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLT 827
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
L+LL++S N +T +GLT + L++ N+ +++ L L++L L + +
Sbjct: 828 HLSLLDISNN-QITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWLYNNQ 886
Query: 507 VTA 509
+T+
Sbjct: 887 ITS 889
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 25/300 (8%)
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T+L L +T+ + + L +L YL LN LS F+ + +L L L N+IT
Sbjct: 62 TILYLSSNQITSISSSAFTGLTALTYLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITT 121
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
GLT L++L L + I + +GL L L L + Q+ S SGL+ L
Sbjct: 122 VPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANAFSGLSKL 181
Query: 353 ESINL-----------SFTG-------------ISDGSLRKLAGLSSLKSLNLDARQITD 388
++ L +FTG I+ GL++L++L L QI
Sbjct: 182 NTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYLYNNQIAT 241
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+ A + LT L L L +IT A L +L + L+ L++L
Sbjct: 242 VAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTAL 301
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
T L L N +T +GLT L +L + N++I + L L+ L L++ ++T
Sbjct: 302 TQLRLDTN-QITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQIT 360
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 130/300 (43%), Gaps = 31/300 (10%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LT+L +L L N + V ++ L+AL +L+ N Q++ FS + +L L L
Sbjct: 106 LTALTQLQLYNNQITTVPSSAFTGLTALQTLYLYN---NQIATVAINAFSGLTALVQLYL 162
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N+IT GL+ L +L L++ + TGL L L L + Q+ +
Sbjct: 163 YNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSA 222
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGL-------- 391
+GLT L+++ L I+ ++ +GL++L L LD QIT +GL
Sbjct: 223 FTGLTALQTLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHL 282
Query: 392 ----------AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+A T LT LT L L +IT ++ L++L + +
Sbjct: 283 YNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNA 342
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN---SRITSAGLRHLKPLKNLR 498
L++L +L L N +T SGL+ L +L +SN S I S+ L L L+
Sbjct: 343 FSGLAALQVLRLDTN-QITTVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQLQ 401
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 156/363 (42%), Gaps = 13/363 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L+ + L G+ +T S+L L + + +I+ + GL++L+ L N
Sbjct: 779 TALVQLQLYGNQITTISASAFAGMSSLVQL-YLYSNRITAIFVNAFTGLTHLSLLDIS-N 836
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT+ AF GL + +L L + GL L++L + + N IT +
Sbjct: 837 NQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL-YNNQITSVVVNAF 895
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI----LCSMIIRLFCLHVFLTSLQKL 232
+ LT L LQ+ +++T + GLS S++ + L ++ F T L L
Sbjct: 896 TSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAF------TGLTAL 949
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T L L +T + + L +L L+L Q++ F+ + +L+ L L N IT
Sbjct: 950 TQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITT 1009
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
GLT L L+L I + L L L L + + + +GLT L
Sbjct: 1010 IAANAFAGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTAL 1069
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+ + I+ S GL++L L L + QIT +A T L+ LT L L +IT
Sbjct: 1070 TQLTMYGNRITTISANAFTGLNALVQLFLQSNQITTISASAFTGLSLLTQLYLSNNQITT 1129
Query: 413 SGA 415
A
Sbjct: 1130 ISA 1132
>gi|168701675|ref|ZP_02733952.1| hypothetical protein GobsU_19277 [Gemmata obscuriglobus UQM 2246]
Length = 407
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 14/203 (6%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-----------VHLKGLTNLESL 307
++L+ +++D G ++ + + L L+L + E+TD + + LKGLT +L
Sbjct: 39 VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLT---TL 95
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
+L + D G+ L L L L+LS T V GL+ L+ L L ++ L T ++D +
Sbjct: 96 DLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGV 155
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
++LA L L +L+L + +TD G L+ LTGLT L + +TD+G L KNL L
Sbjct: 156 KELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHL 215
Query: 428 EICGGGLTDAGVKHIKDLSSLTL 450
E+ G+TDAGVK + L SL L
Sbjct: 216 ELAATGVTDAGVKELAALKSLVL 238
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 9/195 (4%)
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL--------SSLKSLNLD 382
+ LS T+V +GL+ L+ L L +++LS+T ++D ++ LA L L +L+L
Sbjct: 39 VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLT 98
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
++TD G+ AL +L LT LDL +TD G L L +L + G +TDAGVK +
Sbjct: 99 FTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKEL 158
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L LT L+L + +TD + +SGLTGL +L +S + +T AG++ L LKNL L L
Sbjct: 159 AALKGLTALDLG-SMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLEL 217
Query: 503 ESCKVTANDIKRLQS 517
+ VT +K L +
Sbjct: 218 AATGVTDAGVKELAA 232
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 114/209 (54%), Gaps = 18/209 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+TD+ +K L+ L L +L +S ++VTD+G+ L L + + +
Sbjct: 46 VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGL---------------- 89
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+ LT L+L VT A + +L+AL +L L+L+ ++D+G ++ + +G+L L LG
Sbjct: 90 --KGLTTLDLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGG 147
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+TD + L L L +L+L S G+ D G L+GL L L +S T V +G++ L+
Sbjct: 148 TSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELA 207
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSL 376
L NL + L+ TG++D +++LA L SL
Sbjct: 208 ALKNLTHLELAATGVTDAGVKELAALKSL 236
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT--------NLESINLSFTGISDG 365
+ D GL L L L L+LS T+V +G++ L+ L L +++L+FT ++D
Sbjct: 46 VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
++ LA L +L +L+L +TD GL L +L L L L G +TD+G L K L
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
+L++ G+TDAG K + L+ LT L +S +TD ++ ++ L L L ++ + +T
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFT-GVTDAGVKELAALKNLTHLELAATGVTD 224
Query: 486 AGLRHLKPLKNL 497
AG++ L LK+L
Sbjct: 225 AGVKELAALKSL 236
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 24/228 (10%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-----------RG 104
G + V LS + VTD+GL L L +LD ++ +++D G++ L +G
Sbjct: 33 GRPVTKVSLSFTRVTDTGLKELAALKGLTTLDLSY-TEVTDAGVKALAALKALTALGLKG 91
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L+ L L+F R +T G+KA A L L LDL GL L L L +L +
Sbjct: 92 LTTL-DLTFTR---VTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLG- 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
+TD+ +K L+ L L +L + VTD+G L GL+ + + + + +
Sbjct: 147 GTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKE- 205
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
L +L+ LT L L VT A + L+AL SL CQ ++ GC
Sbjct: 206 -LAALKNLTHLELAATGVTDAGVKELAALKSLVL-----CQANELGCH 247
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------HIKDLSSLTLL 451
+T + L R+TD+G L K L +L++ +TDAGVK L LT L
Sbjct: 36 VTKVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTL 95
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+L+ +TD ++ ++ L L +L++S++ +T GL+ L L L +L L VT
Sbjct: 96 DLTFT-RVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAG 154
Query: 512 IKRLQS 517
+K L +
Sbjct: 155 VKELAA 160
>gi|359464005|ref|ZP_09252568.1| internalin A protein [Acaryochloris sp. CCMEE 5410]
Length = 624
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 164/576 (28%), Positives = 267/576 (46%), Gaps = 104/576 (18%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTATS-- 112
Query: 76 HLKDCSNLQSL--------DFNFCI-------------QISDGGLEHLRGLSNLTSLSFR 114
+L+ +NL ++ D++F QI+D + ++ L LTSL
Sbjct: 113 YLQQATNLTTVYLKTTHISDYSFLSDLKNLTHLDLSNNQIAD--ISFIQDLKQLTSLGLA 170
Query: 115 RNNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKL 157
N + G+K ++ L+N +L L R GL L+ L L
Sbjct: 171 ANKIVDISGLKDLTTLNSLNLRSNAIDDYSVLLNFKELSQLTVSVREATGLAFLQDLRGL 230
Query: 158 ESLNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTD-SG 196
L++ + + I+D SD+ LS L L L +S +K++D S
Sbjct: 231 TYLDLSYNHWISDISVLRHLPKLTHLDLGSNQISDIAVLSDLPQLTHLSLSANKISDLSV 290
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
+ L+GL + I + I + L +LQ LT L++ V+ + +L L +L
Sbjct: 291 LQTLQGL---ESLDISANEIADI----AILQNLQGLTQLDISSNDVSD--ISALQDLTTL 341
Query: 257 FYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
LN++ ++ D + +++ +L V + +EI+D L+GL L SLNL +
Sbjct: 342 TQLNVSSNEVIDYSVLQGLTELTNLDVSDNQLSEISD-----LQGLHALTSLNLSYNQLS 396
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
D + L L L L LS V S + L +L ++NLSFT I+D L L GL
Sbjct: 397 DISV--LQDLKQLATLNLSYNPV--SDIAVLQNFKDLTTLNLSFTQITD--LSTLQGLKG 450
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
L SL+L + QI D ++AL L GL L++ +++D A LRN K L SL + ++
Sbjct: 451 LTSLDLHSNQIRD--ISALQDLKGLYRLNVSDNQLSDISA--LRNLKGLFSLNLSINQIS 506
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
D + ++DL+ LT LN S N L+D + ++ GLT L SL++ ++I A + L+ +
Sbjct: 507 D--IAALQDLTRLTSLNASHN-RLSD--ISVLQGLTRLNSLDLGANQI--ADISVLQNIP 559
Query: 496 NLRSLTLESCKVTA-NDIKRLQSRDL-PNLVSFRPE 529
L SL L V+ D K L S +L N +S PE
Sbjct: 560 GLFSLDLRFSDVSVFQDFKGLTSLNLSSNQISSVPE 595
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 27/246 (10%)
Query: 287 FNEITDECLVHLKGLTNLESLN-------LDSCGIGDEGLVN--LTGLCNLKCLELSDTQ 337
FN+ ++ HL+ N +LN L G+ LV+ + +L L L D
Sbjct: 26 FNQSLNDTYHHLQRQPNAYALNDEHQIVGLSLQGVDGHELVDASIEQYPHLSALYLFD-- 83
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
+ S + + L L +I LS ++ S + A ++L ++ L I+D L+ L
Sbjct: 84 IVSPEIVPFASLPGLSTIALSGQDVTATSYLQQA--TNLTTVYLKTTHISDYSF--LSDL 139
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
LTHLDL +I D +++++ K L SL + + D + +KDL++L LNL N
Sbjct: 140 KNLTHLDLSNNQIAD--ISFIQDLKQLTSLGLAANKIVD--ISGLKDLTTLNSLNLRSNA 195
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+ D ++ L L L VS T GL L+ L+ L L L S +DI L
Sbjct: 196 -IDDYSVLL--NFKELSQLTVSVREAT--GLAFLQDLRGLTYLDL-SYNHWISDISVL-- 247
Query: 518 RDLPNL 523
R LP L
Sbjct: 248 RHLPKL 253
>gi|290994342|ref|XP_002679791.1| predicted protein [Naegleria gruberi]
gi|284093409|gb|EFC47047.1| predicted protein [Naegleria gruberi]
Length = 300
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 138/262 (52%), Gaps = 2/262 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ L LT+L++ G + A + +S + + L++ L +G + S++ L L
Sbjct: 22 YISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNLGKEGTKYISEMKQLTNLE 81
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I +E + GL L L++ IGD G +L+ L L L + + +G G++
Sbjct: 82 INNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELKQLTRLNIGENNIGDEGVK 141
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
H+ + L +++S I ++G++ L+ L++++ I G ++ + LT L+
Sbjct: 142 HILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLN 201
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ + D GA ++ + K L +LE+ ++D G K + ++S LT L++ +N NL+D+ +
Sbjct: 202 IAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMSKLTNLDIGEN-NLSDEGV 260
Query: 465 ELISGLTGLVSLNVSNSRITSA 486
+S + L+ L+VS+S+ A
Sbjct: 261 RAVSNMK-LMILSVSSSKKGQA 281
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 1/248 (0%)
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+L LN++R + ++G + S++ +L +L++ N+I H+ + + +L++ +
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
G EG ++ + L LE+++ + G + +SGL L +++ F I D + L+ L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L LN+ I D G+ + + LT LD+ I G+ Y+ LR L+I +
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
G + I ++ LT LN++ N D+ + IS + L +L + N I+ G + + +
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWN-QFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEM 242
Query: 495 KNLRSLTL 502
L +L +
Sbjct: 243 SKLTNLDI 250
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 132/327 (40%), Gaps = 63/327 (19%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
I +G+ +S +D+ G+D+ +G H+ + +L + G +++
Sbjct: 15 IGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLN-NLGKEGTKYISE 73
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LT+L NN I +G K +GL L +L IH
Sbjct: 74 MKQLTNLEINNNN-IQEEGAKFISGLKQLTEL------SIH------------------- 107
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
N I D K LS L L L I + + D G+ +
Sbjct: 108 FNNIGDVGTKHLSELKQLTRLNIGENNIGDEGVKH------------------------- 142
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+ +++LT L++ + + +S + L L++N C + G +K S++ L LN
Sbjct: 143 -ILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLN 201
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ +N+ DE + + L +L L +C I D G ++ + L L++ + + G+R
Sbjct: 202 IAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVR 261
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLA 371
+S N++ + LS + G +K A
Sbjct: 262 AVS---NMKLMILSVSSSKKGQAKKDA 285
>gi|283777859|ref|YP_003368614.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
gi|283436312|gb|ADB14754.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Length = 1487
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 131/518 (25%), Positives = 234/518 (45%), Gaps = 73/518 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S+ LSG+ +T +GL +L ++L+S+D + ++ +E L + R
Sbjct: 891 ADLESLALSGTKITPAGLANLHGLASLKSIDLG-TLPLTTASVETLAAALPDCKIERREP 949
Query: 117 -NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMK 174
+ + A+ + + G + + + L + + +E +N+ C D+ +
Sbjct: 950 ADKLVARWVLSVGGKCTITSDESASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLA 1009
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKG-------------LSISSVIFILCSM--IIRL 219
++ L NLKSL + S +TD+ + + G ++ +V +L + + RL
Sbjct: 1010 SIAELANLKSLLLVGSDITDAQLTSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRL 1069
Query: 220 FC--------LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
+ + V +T+L KL+ L+L G V + L L L +L+L+ LSD+
Sbjct: 1070 YLSGTKVDRGVLVAVTNLPKLSHLSLAGIEVAPSDLSLLKKCPQLEWLDLSSTGLSDEAS 1129
Query: 272 EKFSKIGSLKVLNLGFNEITD---ECLV------HLKG---------------------- 300
++ + SL+ L + N +TD E L+ H+ G
Sbjct: 1130 QQLVGLSSLRELAVPKNPLTDAGQEELIAAMPNCHVVGDPLDPQRLAARWILEKRGTVEL 1189
Query: 301 ----LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
+T+ + L D C + ++L L NLK E+ ++ ++G + LES+
Sbjct: 1190 DTGAVTSPKELPRDKCHVL---AIDLAELANLKAAEV---------IQVIAGCSELESLR 1237
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
LS T I+D L + L LK L L ITD GLA L L L LD+ G RIT +G A
Sbjct: 1238 LSDTAITDADLAAIGKLKLLKKLYLANLAITDDGLAKLAELELLEVLDVSGGRITGAGLA 1297
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
R+ +L+ L + LTD + I ++SL L++S ++D L+ ++GLT L SL
Sbjct: 1298 NFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQLRSL 1357
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+ +++T A L L L L+S + + +++
Sbjct: 1358 GLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEK 1395
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 208/455 (45%), Gaps = 78/455 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL-------T 109
S L +DLS + +TD GL L S L+ L + +SD GLE L +L T
Sbjct: 743 SQLAELDLSSTKITDQGLTRLLALSKLERLYLSDN-SLSDNGLEQLAMAKSLRLLVASGT 801
Query: 110 SLSFRRNNAITAQGMKAF-----AGLINLVKLDL-ERCTR-----IHGGLVNLK------ 152
LS R + +TA + A + V L L ER R + G +V +
Sbjct: 802 MLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDL 861
Query: 153 --GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
G +K+ ++ C I D D+KPL L +L+SL +S +K+T +G+A L GL+
Sbjct: 862 PIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLA------ 915
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
SL+ + L L P+T A +++L+A L C++ +
Sbjct: 916 -----------------SLKSIDLGTL---PLTTASVETLAA-------ALPDCKI--ER 946
Query: 271 CEKFSKIGSLKVLNLGFN------------EITDECLVHLKGLTNLESLNLDSCGIG-DE 317
E K+ + VL++G E+T V + ++E +NL C IG D
Sbjct: 947 REPADKLVARWVLSVGGKCTITSDESASQVELTSATTVLPEAAIHVEKINLTDCKIGPDA 1006
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSL 376
L ++ L NLK L L + + + L ++GL +L ++LS T ++ ++ LA L L
Sbjct: 1007 PLASIAELANLKSLLLVGSDITDAQLTSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQL 1066
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ L L ++ L A+T+L L+HL L G + S + L+ L L++ GL+D
Sbjct: 1067 QRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIEVAPSDLSLLKKCPQLEWLDLSSTGLSD 1126
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGL 470
+ + LSSL L + +N LTD ELI+ +
Sbjct: 1127 EASQQLVGLSSLRELAVPKN-PLTDAGQEELIAAM 1160
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 130/518 (25%), Positives = 215/518 (41%), Gaps = 70/518 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+L++D G VTDS L L+ L+ L I+D G+ L L +L LS R A
Sbjct: 673 ILAIDFEGRGVTDSDLASLELAPGLRQLSL-AATPITDTGIASLAKLKSLAKLSLART-A 730
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+++ A L L +LDL GL L L KLE L + N ++D+ ++ L+
Sbjct: 731 ITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLS-DNSLSDNGLEQLAM 789
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+L+ L S + +++ G L + I + + R L V L +L++ ++
Sbjct: 790 AKSLRLLVASGTMLSERGHGVLTAALPQTEITWDGADMQRQVAL-VLLERGARLSVADMR 848
Query: 239 G--CPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
G PV A D + ++ C+ + DD + + L+ L L +IT L
Sbjct: 849 GNIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGL 908
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVG------------- 339
+L GL +L+S++L + + + L C ++ E +D V
Sbjct: 909 ANLHGLASLKSIDLGTLPLTTASVETLAAALPDCKIERREPADKLVARWVLSVGGKCTIT 968
Query: 340 ---SSGLRHLSGLT--------NLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQIT 387
S+ L+ T ++E INL+ I D L +A L++LKSL L IT
Sbjct: 969 SDESASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDIT 1028
Query: 388 DTGLAA-------------------------LTSLTGLTHLDLFGARITDSGAAYLRNFK 422
D L + L L L L L G ++ + N
Sbjct: 1029 DAQLTSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLP 1088
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
L L + G + + + +K L L+LS + L+D+ + + GL+ L L V +
Sbjct: 1089 KLSHLSLAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNP 1147
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTAN--DIKRLQSR 518
+T AG L + +C V + D +RL +R
Sbjct: 1148 LTDAGQEEL-------IAAMPNCHVVGDPLDPQRLAAR 1178
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 166/378 (43%), Gaps = 59/378 (15%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+G +V S L LK C L+ LD + +SD + L GLS+L L+ +N A
Sbjct: 1095 LAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNPLTDAGQ 1153
Query: 124 MKAFAGLIN-------------LVKLDLERCTRIH---GGLVNLKGLMK----------L 157
+ A + N + LE+ + G + + K L +
Sbjct: 1154 EELIAAMPNCHVVGDPLDPQRLAARWILEKRGTVELDTGAVTSPKELPRDKCHVLAIDLA 1213
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
E N+K I + ++G + L+SL++S + +TD+ +A + L + ++
Sbjct: 1214 ELANLKAAEVI-----QVIAGCSELESLRLSDTAITDADLAAIGKLKLLKKLY------- 1261
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
L NL +T L L+ L L L+++ +++ G F
Sbjct: 1262 ----------------LANLA---ITDDGLAKLAELELLEVLDVSGGRITGAGLANFRSA 1302
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 336
SL+ LNL +TD L + +T+L SL++ +C G+ D GL L GL L+ L L T
Sbjct: 1303 SSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQLRSLGLRGT 1362
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
++ + L+ LE ++L T I D + KL L+SL+ L L +TD G+A+L
Sbjct: 1363 KLTDAAAESLASYAKLEQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKTSVTDGGVASLAK 1422
Query: 397 LTGLTHLDLFGARITDSG 414
L L + L +T++
Sbjct: 1423 LKDLRSVSLVRTSVTEAA 1440
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 28/291 (9%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
++ EG VT + L SL L L+L ++D G +K+ SL L+L IT++
Sbjct: 676 IDFEGRGVTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLARTAITNKG 735
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L L+ L L+L S I D+GL L L L+ L LSD +
Sbjct: 736 LESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSL---------------- 779
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
SD L +LA SL+ L +++ G LT+ T + GA +
Sbjct: 780 --------SDNGLEQLAMAKSLRLLVASGTMLSERGHGVLTAALPQTEITWDGADMQRQV 831
Query: 415 A-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNC-NLTDKTLELISGLT 471
A L L ++ G + + + L +L + C + D L+ + L
Sbjct: 832 ALVLLERGARLSVADMRGNIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALA 891
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
L SL +S ++IT AGL +L L +L+S+ L + +T ++ L + LP+
Sbjct: 892 DLESLALSGTKITPAGLANLHGLASLKSIDLGTLPLTTASVETLAAA-LPD 941
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL ++LS + +TD L + ++L SLD + C +SD GL+ L GL+ L SL R
Sbjct: 1302 ASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQLRSLGL-R 1360
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T ++ A L +LDL+ T I V + + +TD +
Sbjct: 1361 GTKLTDAAAESLASYAKLEQLDLD-STSIGDSGVEKLLSLTSLRRLVLAKTSVTDGGVAS 1419
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLK 201
L+ L +L+S+ + + VT++ L+
Sbjct: 1420 LAKLKDLRSVSLVRTSVTEAACTELE 1445
>gi|326487896|dbj|BAJ89787.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 239/501 (47%), Gaps = 52/501 (10%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIA-------YL 200
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A +L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
+ L+ + + I + F L +T LT+L L+G V+++ LSA+G
Sbjct: 286 QKLNAADSLH----EIGQNF-LSKLVTLKATLTVLRLDGFEVSSS---LLSAIG------ 331
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCG-IGDEG 318
+GC +IG K N +TDE + L + L ++L C + ++
Sbjct: 332 --------EGCTNLVEIGLSKC-----NGVTDEGISSLVARCSYLRKIDLTCCNLVTNDS 378
Query: 319 LVNLTGLCN-LKCLEL-SDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSS 375
L ++ C L+CL L S + + GL + S NL+ I+L+ G++D +L LA S
Sbjct: 379 LDSIADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSE 438
Query: 376 LKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG 431
L L L + I+D GL ++S G L LDL+ + ITD G A L N K ++ L +C
Sbjct: 439 LLILKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCY 498
Query: 432 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSR-ITSAGL 488
+TD+G+ H+ L LT L L +T + ++ G LV L++ + +GL
Sbjct: 499 CNKITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVNDSGL 558
Query: 489 RHLKPLK-NLRSLTLESCKVT 508
L NLR LT+ C+VT
Sbjct: 559 WALARYALNLRQLTISYCQVT 579
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 183/411 (44%), Gaps = 36/411 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
++D +D++ + L S+D+S V++ L + L+ L C I D GLE L
Sbjct: 194 ISDIGVDLLVKKCRDLRSLDISYLKVSNESLRSISTLEKLEELAMVACSCIDDEGLELLS 253
Query: 103 RGLSNLTSLSFRRNNAITAQGM------KAFAGLINLVKLDLERCTRIHGGLVNLKG--- 153
RG ++L S+ R N +T+QG+ +F +N E LV LK
Sbjct: 254 RGSNSLQSVDVSRCNHVTSQGLASLIDGHSFLQKLNAADSLHEIGQNFLSKLVTLKATLT 313
Query: 154 LMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKG-LSISSVIF 210
+++L+ ++ S + + G TNL + +S C+ VTD GI+ L S I
Sbjct: 314 VLRLDGFE------VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKID 367
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL-SALGSLFYLNLNRCQLSD 268
+ C ++ L + + L L LE C + L+ + S +L ++L C ++D
Sbjct: 368 LTCCNLVTNDSLDSIADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVND 427
Query: 269 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNLDSC-GIGDEGLVNLTGL 325
+ +K L +L LG + I+D+ L + L L+L C I D+GL L
Sbjct: 428 EALHHLAKCSELLILKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANG 487
Query: 326 C-NLKCLELSD-TQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSL 379
C +K L L ++ SGL HL L L ++ L TGI S+ + G SL L
Sbjct: 488 CKKIKLLNLCYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSV--VIGCKSLVEL 545
Query: 380 NLD-ARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+L + D+GL AL L L + ++T G +L +LR L+
Sbjct: 546 DLKRCYSVNDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLRCLQ 594
>gi|410684076|ref|YP_006060083.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
gi|299068565|emb|CBJ39793.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
Length = 555
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 176/373 (47%), Gaps = 19/373 (5%)
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK- 191
VKL + + L + +G LESL ++ TD D+ L +LK+L +S C +
Sbjct: 113 VKLTVRSSDELQA-LRDTEGYAALESLTLE--GRFTDEDLATLPA--SLKALDLSRCGRQ 167
Query: 192 VTDSGIAYLKGLSISSVIFILCSMI----IRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
+T +GIA+L L ++ + + + I RL H LT+ LN+ + A
Sbjct: 168 ITAAGIAHLSELPLAE-LNVRNNWIGDEGARLLAAHPTLTT------LNVASNGIGDAGA 220
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
+L+A L L+++ ++ DG + + +LK LN+ N+I D + L T L L
Sbjct: 221 QALAANTRLESLDISFNEIGSDGVQALADNATLKTLNISSNDIGDAGALALAVNTTLTEL 280
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
N I D G L +L L++SD G +G++ ++ T L +++S +S+ +
Sbjct: 281 NTSCNRISDAGAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGV 340
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+A ++L L + +I G AL + T L LD I GA L L+ L
Sbjct: 341 LAVAANTTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARHATLKQL 400
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
+ + DAG D ++L LNL + C +TD L +++ L +LNVS++RIT+ G
Sbjct: 401 NLEKNPIGDAGAVAFADNATLRSLNL-KGCKVTDSGLRVLATNATLRTLNVSDNRITAEG 459
Query: 488 LRHLKPLKNLRSL 500
+ L SL
Sbjct: 460 AKATAANSTLTSL 472
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 197/468 (42%), Gaps = 59/468 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L S+ L G TD L L ++L++LD + C QI+ G+ HL L L L+ R
Sbjct: 133 AALESLTLEGR-FTDEDLATLP--ASLKALDLSRCGRQITAAGIAHLSELP-LAELNVR- 187
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN I +G + A L L++ G L +LESL+I + N I ++
Sbjct: 188 NNWIGDEGARLLAAHPTLTTLNVASNGIGDAGAQALAANTRLESLDISF-NEIGSDGVQA 246
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ LK+L IS + + D+G L V T
Sbjct: 247 LADNATLKTLNISSNDIGDAGA----------------------LALAVNTT-------- 276
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
L LN + ++SD G + + SL L++ N D +
Sbjct: 277 --------------------LTELNTSCNRISDAGAQALANSDSLTSLDISDNGFGDAGV 316
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
+ T L L++ + + G++ + L L ++D ++G++G + L+ T L S+
Sbjct: 317 QAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCEIGTAGAQALAANTRLVSL 376
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
+ GI + LA ++LK LNL+ I D G A L L+L G ++TDSG
Sbjct: 377 DAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLKGCKVTDSGL 436
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
L LR+L + +T G K S+LT L++S N + D+ ++ T L
Sbjct: 437 RVLATNATLRTLNVSDNRITAEGAKATAANSTLTSLDVSHN-GIEDEGALALAANTVLNV 495
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
LN+ + +T G+ L L L + +A I+R +P L
Sbjct: 496 LNICYNALTVKGVTALAASTTLAVLDIRENGYSAT-IERALQAAVPQL 542
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 180/397 (45%), Gaps = 44/397 (11%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV-------DLSGSDV 69
SRC +++ L +L L + V + W I +G+ LL+ +++ + +
Sbjct: 162 SRCGRQITAAGI--AHLSELPLAEL-NVRNNW---IGDEGARLLAAHPTLTTLNVASNGI 215
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
D+G L + L+SLD +F +I G++ L + L +L+ N+ I G A A
Sbjct: 216 GDAGAQALAANTRLESLDISFN-EIGSDGVQALADNATLKTLNISSND-IGDAGALALAV 273
Query: 130 LINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +L+ C RI G L L SL+I N D+ ++ ++ T L+ L IS
Sbjct: 274 NTTLTELNTS-CNRISDAGAQALANSDSLTSLDIS-DNGFGDAGVQAIAANTRLRRLDIS 331
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
++++++G+ L++++ T+L KL + + C + A
Sbjct: 332 RNRLSEAGV-----LAVAAN------------------TTLTKLCIAD---CEIGTAGAQ 365
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+L+A L L+ + +G + ++ +LK LNL N I D V L SLN
Sbjct: 366 ALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLN 425
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L C + D GL L L+ L +SD ++ + G + + + L S+++S GI D
Sbjct: 426 LKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLTSLDVSHNGIEDEGAL 485
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LA + L LN+ +T G+ AL + T L LD+
Sbjct: 486 ALAANTVLNVLNICYNALTVKGVTALAASTTLAVLDI 522
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 137/324 (42%), Gaps = 30/324 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++++S +D+ D+G + L + L L+ + C +ISD G + L +LTSL +
Sbjct: 251 ATLKTLNISSNDIGDAGALALAVNTTLTELNTS-CNRISDAGAQALANSDSLTSLDI-SD 308
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N G++A A L +LD+ R G++ + L L I C I + + L
Sbjct: 309 NGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCE-IGTAGAQAL 367
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ T L SL + + G L H L LN
Sbjct: 368 AANTRLVSLDAGHNGIGTEGAQAL--------------------ARHATLKQ------LN 401
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
LE P+ A + + +L LNL C+++D G + +L+ LN+ N IT E
Sbjct: 402 LEKNPIGDAGAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAK 461
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
+ L SL++ GI DEG + L L L + + G+ L+ T L ++
Sbjct: 462 ATAANSTLTSLDVSHNGIEDEGALALAANTVLNVLNICYNALTVKGVTALAASTTLAVLD 521
Query: 357 LSFTGISDGSLRKL-AGLSSLKSL 379
+ G S R L A + LK+L
Sbjct: 522 IRENGYSATIERALQAAVPQLKAL 545
>gi|149175123|ref|ZP_01853746.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
gi|148846101|gb|EDL60441.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
Length = 1079
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 13/279 (4%)
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEK 273
++ R F L +F + + PV A + L+ G F NL +
Sbjct: 2 LVRRWFLLALFAVIFTQPVFPAEKVAPVEARTPEQLAVEGLRRFCTNL-----------Q 50
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
+K GS +++ L +T E L L+ L+ L + +GDE L+ + L NL L L
Sbjct: 51 TNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLML 110
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
S++ VG SGL L L LE + L T ++D L+ L+ L LK L+L +TD G+
Sbjct: 111 SESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQT 170
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L L L L L G +++D+G L K L+ L + +T + + + L SL L+L
Sbjct: 171 LADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSL 230
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
++ L ++ +SGLT L L + + + + ++ LK
Sbjct: 231 NR-TKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK 268
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 129/267 (48%), Gaps = 11/267 (4%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN---- 161
+ + R + +G++ F + K R R+ V L+ L +LE
Sbjct: 24 EKVAPVEARTPEQLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDY 83
Query: 162 -IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
C + D + + LTNL +L +S S V DSG++ LK L+ +++ + +
Sbjct: 84 LAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAG 143
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
H L+SL++L +L+L VT + +L+ L +L L L+ Q+SD G + +++ L
Sbjct: 144 LQH--LSSLKQLKVLSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQL 201
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
K+L L IT L L L +LE L+L+ + + L+GL LK LE+ T +G
Sbjct: 202 KILYLARTAITGSQLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEIQYTGLGE 261
Query: 341 SGLRHLSGLTNLESINLSFTG-ISDGS 366
S ++ L NLE N+ FTG SD S
Sbjct: 262 SSIQQLK--RNLEKTNI-FTGEKSDAS 285
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 11/192 (5%)
Query: 334 SDTQVGSSGLRHLSGLTNLES--------INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ Q+ GLR TNL++ + LS ++ +L +L L L +
Sbjct: 33 TPEQLAVEGLRRFC--TNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPH 90
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
+ D L + LT L L L + + DSG + L+ L L + +TDAG++H+ L
Sbjct: 91 LGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSL 150
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
L +L+L +N N+TD+ ++ ++ L L L +S ++++ AGL+ L LK L+ L L
Sbjct: 151 KQLKVLSL-RNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLART 209
Query: 506 KVTANDIKRLQS 517
+T + + L +
Sbjct: 210 AITGSQLSALNT 221
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 77/149 (51%), Gaps = 9/149 (6%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS S V DSGL LK + L+ L + +++D GL+HL L L LS R N +T QG
Sbjct: 110 LSESAVGDSGLSCLKKLNKLERLYLD-NTKVTDAGLQHLSSLKQLKVLSLRNLN-VTDQG 167
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ A L NL L L GL +L L +L+ L + IT S + L+ L +L+
Sbjct: 168 MQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLA-RTAITGSQLSALNTLESLE 226
Query: 184 SLQISCSK----VTD--SGIAYLKGLSIS 206
L ++ +K V D SG+ LKGL I
Sbjct: 227 HLSLNRTKLQPVVVDALSGLTQLKGLEIQ 255
>gi|326505700|dbj|BAJ95521.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 239/501 (47%), Gaps = 52/501 (10%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIA-------YL 200
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A +L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
+ L+ + + I + F L +T LT+L L+G V+++ LSA+G
Sbjct: 286 QKLNAADSLH----EIGQNF-LSKLVTLKATLTVLRLDGFEVSSS---LLSAIG------ 331
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCG-IGDEG 318
+GC +IG K N +TDE + L + L ++L C + ++
Sbjct: 332 --------EGCTNLVEIGLSKC-----NGVTDEGISSLVARCSYLRKIDLTCCNLVTNDS 378
Query: 319 LVNLTGLCN-LKCLEL-SDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSS 375
L ++ C L+CL L S + + GL + S NL+ I+L+ G++D +L LA S
Sbjct: 379 LDSIADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSE 438
Query: 376 LKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG 431
L L L + I+D GL ++S G L LDL+ + ITD G A L N K ++ L +C
Sbjct: 439 LLILKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCY 498
Query: 432 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSR-ITSAGL 488
+TD+G+ H+ L LT L L +T + ++ G LV L++ + +GL
Sbjct: 499 CNKITDSGLSHLGALEELTNLELRCLVRITGIGISSVVIGCKSLVELDLKRCYSVDDSGL 558
Query: 489 RHLKPLK-NLRSLTLESCKVT 508
L NLR LT+ C+VT
Sbjct: 559 WALARYALNLRQLTISYCQVT 579
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 183/411 (44%), Gaps = 36/411 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
++D +D++ + L S+D+S V++ L + L+ L C I D GLE L
Sbjct: 194 ISDIGVDLLVKKCRDLRSLDISYLKVSNESLRSISTLEKLEELAMVACSCIDDEGLELLS 253
Query: 103 RGLSNLTSLSFRRNNAITAQGM------KAFAGLINLVKLDLERCTRIHGGLVNLKG--- 153
RG ++L S+ R N +T+QG+ +F +N E LV LK
Sbjct: 254 RGSNSLQSVDVSRCNHVTSQGLASLIDGHSFLQKLNAADSLHEIGQNFLSKLVTLKATLT 313
Query: 154 LMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKG-LSISSVIF 210
+++L+ ++ S + + G TNL + +S C+ VTD GI+ L S I
Sbjct: 314 VLRLDGFE------VSSSLLSAIGEGCTNLVEIGLSKCNGVTDEGISSLVARCSYLRKID 367
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL-SALGSLFYLNLNRCQLSD 268
+ C ++ L + + L L LE C + L+ + S +L ++L C ++D
Sbjct: 368 LTCCNLVTNDSLDSIADNCKMLECLRLESCSSINEKGLERIASCCPNLKEIDLTDCGVND 427
Query: 269 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNLDSC-GIGDEGLVNLTGL 325
+ +K L +L LG + I+D+ L + L L+L C I D+GL L
Sbjct: 428 EALHHLAKCSELLILKLGLSSSISDKGLGFISSKCGKLIELDLYRCSSITDDGLAALANG 487
Query: 326 C-NLKCLELSD-TQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSL 379
C +K L L ++ SGL HL L L ++ L TGI S+ + G SL L
Sbjct: 488 CKKIKLLNLCYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSV--VIGCKSLVEL 545
Query: 380 NLD-ARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+L + D+GL AL L L + ++T G +L +LR L+
Sbjct: 546 DLKRCYSVDDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLRCLQ 594
>gi|29823176|emb|CAD15503.2| probable lrr-gala family type III effector protein (gala 5)
[Ralstonia solanacearum GMI1000]
Length = 538
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 132/517 (25%), Positives = 217/517 (41%), Gaps = 89/517 (17%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 167
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
N I + K L+ L+SL +S +++ D G L
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL----------------------- 261
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
AAC L L+ NR + DG + +L L
Sbjct: 262 --------------------AACTQ-------LTTLDANRNGIGVDGATALAASRTLTSL 294
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+G NEI D ++ L L +LN++S G+G +G+ L L L L +G++G
Sbjct: 295 AIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGA 354
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L+ T+L +++L + I + LA + L +L+L I D G+ AL++ L L
Sbjct: 355 TALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWL 414
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+ + D+ A L K L +L+I G G+ D G K + +LT L++S N ++ +
Sbjct: 415 SVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAG 473
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
++ LVSL++ N+R+ +G R L + L SL
Sbjct: 474 ARALAANARLVSLDLRNNRMEESGTRALLANRTLSSL 510
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 121/302 (40%), Gaps = 29/302 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L C+ L +LD N I G L LTSL+ N
Sbjct: 242 TLRSLDVSDNRIGDEGARELAACTQLTTLDANRN-GIGVDGATALAASRTLTSLAI-GGN 299
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+ A A L L++E G+ L L L + N I ++ L+
Sbjct: 300 EIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLD-GNDIGNAGATALA 358
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
T+L +L + S++ G L + KLT L+L
Sbjct: 359 ASTSLTTLHLEHSRIGAEGAQALAANT--------------------------KLTTLDL 392
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ A + +LSA +L +L++ R L D + +L L++ N I D+
Sbjct: 393 GYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKA 452
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L L +L++ S I + G L L L+L + ++ SG R L L S+ +
Sbjct: 453 LAANPTLTTLDVSSNDIKNAGARALAANARLVSLDLRNNRMEESGTRALLANRTLSSLGV 512
Query: 358 SF 359
S
Sbjct: 513 SL 514
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-- 383
+++ L + D + G +G+ LE + L+ T +D LR L +SLK+L+L
Sbjct: 100 ADMRELVIKD-RAGLAGVLRAGNYPALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCR 155
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
IT G+A L+ L L L++ RI GA L N L SL + G + G +
Sbjct: 156 GSITAAGIAHLSRLP-LVRLNVRNKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQA-- 212
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
L+ N LT +LNVS +RI AG + L + LRSL +
Sbjct: 213 ---------LAANTRLT--------------TLNVSGNRIGVAGAKALAANQTLRSLDVS 249
Query: 504 SCKV 507
++
Sbjct: 250 DNRI 253
>gi|84043372|ref|XP_951476.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348176|gb|AAQ15503.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359981|gb|AAX80405.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1393
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 144/526 (27%), Positives = 228/526 (43%), Gaps = 70/526 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD G+ + C NL +LD +FC
Sbjct: 556 ALNELNLSNCIRINAGWEALEKLQ--QLHVAILSNTHITDRGISYFSKCKNLVTLDLSFC 613
Query: 92 IQISD-------GGLEHL---------RGLSNLTSLSFRRNNAITAQGMKAFAGLI---- 131
++ D LE L +GLS L L R + +G++ +I
Sbjct: 614 NKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELP--RLCVLNIKGVQLEDSVIGSLG 671
Query: 132 ---NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LV+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L +
Sbjct: 672 NGKSLVRLSLENC-KGFGDVTPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVLDLG 729
Query: 189 CSKVTDSGIAYL--KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
++V D+ + + + + S+ F C I + + SL L LN++ C +
Sbjct: 730 RTQVDDNSLENICTSSIPLVSLNFSHCKKITSISAI----ASLTALEELNIDNCCNVTSG 785
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLE 305
+ L L L+ +++D+ S+ SL LNL F +ITD + L +T LE
Sbjct: 786 WNVFGTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLE 843
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
LNLD C +G+ L L + L + + +G + S L N +S+ S G
Sbjct: 844 ELNLDCCPNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRG 903
Query: 366 --SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
S++ L+ +++L+ L LD AR++ + S + L L + + TD
Sbjct: 904 RISVKALSDIATLEELVLDHAREV-----CCIPSFSCLPRLRVLNLKYTD---------- 948
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
+ K+I + SL LNLS +TD + ++S L+ L LNV+
Sbjct: 949 -----------INGDATKNISESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCN 995
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFR 527
G L L LR L +TA DI L S + L L FR
Sbjct: 996 AIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFR 1041
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 140/576 (24%), Positives = 229/576 (39%), Gaps = 139/576 (24%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+ +
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIDVV 362
Query: 109 TSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLDLER 140
+L R +N M + ++ L +L++++
Sbjct: 363 WALPKLRVFHMKDVHLSEPSLDSVGTGGSLVKVSLDNCAGFGDMSLLSSIVTLEELNIQK 422
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCN-------------CITDSDMKPLSGLTNLKSLQ- 186
C I G+ L L L LNIK + + +M+ ++GL+N+++L
Sbjct: 423 CADIISGVGCLGTLPYLRVLNIKEVHISSLDFTGIGASKSLLQLNMESITGLSNVEALAN 482
Query: 187 -ISCSKVT-------DSGIAYLKGLSISSVI--------------FILCSMIIRLFCLHV 224
++ K++ D+GI L L V+ L ++ L H
Sbjct: 483 ILTLEKLSLHGCTDIDAGIGCLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHC 542
Query: 225 F-------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
+ ++SL+ L LNL C A ++L L L L+ ++D G FSK
Sbjct: 543 WKMTNVSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHITDRGISYFSKC 602
Query: 278 GSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTGLC--NLKCL 331
+L L+L F N++ D + L +T LE LNLDSC +GL L LC N+K +
Sbjct: 603 KNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGV 660
Query: 332 ELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+L D+ +GS G + LS L LE +NL + + L L
Sbjct: 661 QLEDSVIGSLGNGKSLVRLSLENCKGFGDVTPLSNLVTLEELNLHYCDKVTSGMGTLGRL 720
Query: 374 SSLKSLNLDARQITD------------------------TGLAALTSLTGLTHLDLFGAR 409
L+ L+L Q+ D T ++A+ SLT L L++
Sbjct: 721 PQLRVLDLGRTQVDDNSLENICTSSIPLVSLNFSHCKKITSISAIASLTALEELNIDNCC 780
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
SG LR + + D ++H+ + SL LNL+ ++TD T +S
Sbjct: 781 NVTSGWNVFGTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDITDVT--ALSK 838
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+T L LN+ G+ L L R L+++ C
Sbjct: 839 ITMLEELNLDCCPNIRKGIETLGTLPKARILSMKEC 874
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 116/418 (27%), Positives = 186/418 (44%), Gaps = 38/418 (9%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ +F+ L L L+L + T I+G N+ L SLN+ C +TD + LS L+ L
Sbjct: 930 IPSFSCLPRLRVLNL-KYTDINGDATKNISESKSLRSLNLSHCKWVTD--ISVLSSLSTL 986
Query: 183 KSLQISCSKVTDSG-----------IAYLKGLSISSVIFILCSMIIRLFCLHVF------ 225
+ L ++C G +A L +I++ S +L L F
Sbjct: 987 EELNVNCCNAIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFRCKKLS 1046
Query: 226 ----LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+ +Q L L ++ C L++L L L +L+L SD E SL
Sbjct: 1047 DVTVVYKIQSLEELIVKNCSGGLKGLNALGTLPRLRFLHLRNVSGSDISVESIGTSKSLV 1106
Query: 282 VLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
LN+ E+TD L +T+LE L+L CG EG+ L L L+ L L +++
Sbjct: 1107 RLNIETREELTDT--TPLSNITSLEELSLRKCGNNLEGVGTLGKLPRLRSLYLGLSRIND 1164
Query: 341 SGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
S L ++ ++ S+NL+ + ++D + ++ L++L+ LNL +G AL+ L
Sbjct: 1165 STLYYICLSRSITSLNLASSWKLTD--ISHISKLTALEELNLRGCYPITSGWEALSELPR 1222
Query: 400 LTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNC 457
L L+L R+T G Y+R K+L +L + +TDA + +IK L L + C
Sbjct: 1223 LRVLNLESTRVTTRYGGYYIRRCKSLVTLSLESCDMTDASCLANIKTLEELHI----GRC 1278
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ L L LN+ S IT LR ++P + L L C+ NDI L
Sbjct: 1279 KELRWGFSPLFTLPRLRILNLICSLITDEDLREIQPPHTIEELNLSYCE-ELNDITPL 1335
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 117/470 (24%), Positives = 199/470 (42%), Gaps = 66/470 (14%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ L+ ++C +++ G+ L L L L R I LV L+ C
Sbjct: 699 LEELNLHYCDKVT-SGMGTLGRLPQLRVLDLGRTQVDDNSLENICTSSIPLVSLNFSHCK 757
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+I + + L LE LNI C C S L L+ +S +++ D I ++
Sbjct: 758 KI-TSISAIASLTALEELNIDNC-CNVTSGWNVFGTLHQLRVATLSNTRINDEKIRHVSE 815
Query: 203 L-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLL---NLEGCPVTAACLDSLSALGSLFY 258
S++++ C I + T+L K+T+L NL+ CP +++L L
Sbjct: 816 CKSLNTLNLAFCKDITDV-------TALSKITMLEELNLDCCPNIRKGIETLGTLPKARI 868
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN---LESLNLDS---- 311
L++ C + D ++ S +G+ K L + N + +K L++ LE L LD
Sbjct: 869 LSMKECYMGDGYAQQCSILGNSKSL-VKLNLERSRGRISVKALSDIATLEELVLDHAREV 927
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 370
C I + + L L+ L L T + +++S +L S+NLS ++D S+ L
Sbjct: 928 CCIP-----SFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCKWVTDISV--L 980
Query: 371 AGLSSLKSLNLDA------------------------RQITDTGLAALTSLTGLTHLDLF 406
+ LS+L+ LN++ IT +A L+S L L F
Sbjct: 981 SSLSTLEELNVNCCNAIRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFF 1040
Query: 407 G-ARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+++D Y ++L L + C GGL G+ + L L L+L +N + +D +
Sbjct: 1041 RCKKLSDVTVVY--KIQSLEELIVKNCSGGL--KGLNALGTLPRLRFLHL-RNVSGSDIS 1095
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
+E I LV LN+ T L PL N+ SL S + N+++
Sbjct: 1096 VESIGTSKSLVRLNIE----TREELTDTTPLSNITSLEELSLRKCGNNLE 1141
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 143/536 (26%), Positives = 229/536 (42%), Gaps = 75/536 (13%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
+ C+ V+L D A D G Y G I ++ L++ LS G ++
Sbjct: 96 TECIHRVTLYNAADNAFSDE--GLYEGALSSLCGRIQAKK---LTITLS-----KGGKLN 145
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA--GLI 131
LK S L+ L+ I+ G L ++ L+NL L R NN F+ L
Sbjct: 146 LKRVSKLKQLE-ELRIEYPRGKLVNIISLNNLDMLKRLCLRSNNVDNNDVCHLFSVGTLE 204
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
L D + T I G + L LM LE LN I D+ + +S L L +S C+
Sbjct: 205 ELAITDTMQLTNIRG-ISRLTNLMCLE-LN---STDIDDTCIGEISACAKLSKLSVSECN 259
Query: 191 KVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVF-----LTSLQKLTLLNLEGCP 241
+TD S +A L+ L+++S C H+ L L +L +L+L G P
Sbjct: 260 NITDATPISQLAALEELNLNS-------------CYHITKGIGTLGMLLRLRMLDLSGVP 306
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK-------IG 278
V CL L GSL LN++ C QL+D +GC + ++ +
Sbjct: 307 VEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIDVVWALP 366
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ 337
L+V ++ +++ L + +L ++LD+C G GD L L+ + L+ L +
Sbjct: 367 KLRVFHMKDVHLSEPSLDSVGTGGSLVKVSLDNCAGFGDMSL--LSSIVTLEELNIQKCA 424
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTS 396
SG+ L L L +N+ IS + SL LN+++ IT + + AL +
Sbjct: 425 DIISGVGCLGTLPYLRVLNIKEVHISSLDFTGIGASKSLLQLNMES--ITGLSNVEALAN 482
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ L L L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 483 ILTLEKLSLHGCTDIDAGIGCLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHC 542
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
+T+ + IS L L LN+SN +AG L+ L+ L L + +T I
Sbjct: 543 WKMTN--VSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHITDRGI 596
>gi|17546520|ref|NP_519922.1| GALA protein 3 [Ralstonia solanacearum GMI1000]
Length = 522
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 132/517 (25%), Positives = 217/517 (41%), Gaps = 89/517 (17%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 50 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 107
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 108 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 151
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 152 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 209
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
N I + K L+ L+SL +S +++ D G L
Sbjct: 210 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL----------------------- 245
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
AAC L L+ NR + DG + +L L
Sbjct: 246 --------------------AACTQ-------LTTLDANRNGIGVDGATALAASRTLTSL 278
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+G NEI D ++ L L +LN++S G+G +G+ L L L L +G++G
Sbjct: 279 AIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGA 338
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L+ T+L +++L + I + LA + L +L+L I D G+ AL++ L L
Sbjct: 339 TALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRALSANATLVWL 398
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+ + D+ A L K L +L+I G G+ D G K + +LT L++S N ++ +
Sbjct: 399 SVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSN-DIKNAG 457
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
++ LVSL++ N+R+ +G R L + L SL
Sbjct: 458 ARALAANARLVSLDLRNNRMEESGTRALLANRTLSSL 494
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 121/302 (40%), Gaps = 29/302 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L C+ L +LD N I G L LTSL+ N
Sbjct: 226 TLRSLDVSDNRIGDEGARELAACTQLTTLDANRN-GIGVDGATALAASRTLTSLAI-GGN 283
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+ A A L L++E G+ L L L + N I ++ L+
Sbjct: 284 EIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLD-GNDIGNAGATALA 342
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
T+L +L + S++ G L + KLT L+L
Sbjct: 343 ASTSLTTLHLEHSRIGAEGAQALAANT--------------------------KLTTLDL 376
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ A + +LSA +L +L++ R L D + +L L++ N I D+
Sbjct: 377 GYNDIGDAGVRALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKA 436
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L L +L++ S I + G L L L+L + ++ SG R L L S+ +
Sbjct: 437 LAANPTLTTLDVSSNDIKNAGARALAANARLVSLDLRNNRMEESGTRALLANRTLSSLGV 496
Query: 358 SF 359
S
Sbjct: 497 SL 498
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-- 383
+++ L + D + G +G+ LE + L+ T +D LR L +SLK+L+L
Sbjct: 84 ADMRELVIKD-RAGLAGVLRAGNYPALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCR 139
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
IT G+A L+ L L L++ RI GA L N L SL + G + G +
Sbjct: 140 GSITAAGIAHLSRLP-LVRLNVRNKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQA-- 196
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
L+ N LT +LNVS +RI AG + L + LRSL +
Sbjct: 197 ---------LAANTRLT--------------TLNVSGNRIGVAGAKALAANQTLRSLDVS 233
Query: 504 SCKV 507
++
Sbjct: 234 DNRI 237
>gi|290993458|ref|XP_002679350.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092966|gb|EFC46606.1| leucine rich repeat protein [Naegleria gruberi]
Length = 528
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 178/353 (50%), Gaps = 18/353 (5%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFI---LCSMIIRLFCLHVFLTSLQKLTLLNL 237
NL+ L +S G+ LK L +V+ + C+ ++ ++ ++ LT LN+
Sbjct: 129 NLRELDLSGQNCYREGVKCLKSLKHLTVLNVSKTKCANGVK------YIGMIENLTSLNI 182
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ ++ LS+L L L++N C L+ + + S++ SL L++G N++ L+
Sbjct: 183 SSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLP 242
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
+ + +L++L+++ I E +LT + NL L +S G+ GL+ +S + NL +++
Sbjct: 243 ISSMESLQTLHINRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDI 302
Query: 358 S----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+ D + + +A L+ L LN+ +IT +G LTSLT LT L + G I D
Sbjct: 303 GNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDD 362
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ + K L L I GG ++ GVK I L LT+L++S+ + L+ + + L
Sbjct: 363 FLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQL 422
Query: 474 VSLNVSNSRITSA--GLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
SL++S + + + G ++ K L NL L + C + N IK + LPNL
Sbjct: 423 TSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISG--LPNL 473
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 124/472 (26%), Positives = 206/472 (43%), Gaps = 72/472 (15%)
Query: 83 LQSLDFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ + FNF I + H + + + L + N I K F NL +LDL
Sbjct: 79 MTRIKFNFRISERREWKKLSQSHQKYIDRVECLHLKYNLLIFTIIQKRFY---NLRELDL 135
Query: 139 --ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ C R G+ LK L L LN+ C + +K + + NL SL IS + +
Sbjct: 136 SGQNCYR--EGVKCLKSLKHLTVLNVSKTKCA--NGVKYIGMIENLTSLNISSVHLENQD 191
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
+ +L +SL+KLT L++ C +T D +S L SL
Sbjct: 192 VEHL--------------------------SSLKKLTSLDVNNCNLTFEDADIISRLKSL 225
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
+L++ L G S + SL+ L++ I E L + NL L + G+
Sbjct: 226 TFLDIGNNDLGPLGLLPISSMESLQTLHINRIWIESESCESLTKMINLTELYISKNDFGN 285
Query: 317 EGLVNLTGLCNLKCLELSDTQV----GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
EGL ++ + NL+ L++ + + G + ++ LT L +N+S I+ + L
Sbjct: 286 EGLKWISSMKNLRVLDIGNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTS 345
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--C 430
L+ L +L +D +I D L +++SL LT+L++ G +I+ G + L L+I C
Sbjct: 346 LTKLTTLFIDGNEICDDFLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDISEC 405
Query: 431 GG--------------------GLTD-----AGVKHI-KDLSSLTLLNLSQNCNLTDKTL 464
G LTD G K+ K+L +LT L ++ C L D +
Sbjct: 406 VGCCSEVLKQLGLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNF-CGLDDNAI 464
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
+ ISGL L L++ ++ +T ++HL +K L L+L +T KRL+
Sbjct: 465 KWISGLPNLKYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLE 516
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 159/373 (42%), Gaps = 75/373 (20%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I S+ SL +D+ +D+ GL+ + +LQ+L N I I E L + NLT L
Sbjct: 218 IISRLKSLTFLDIGNNDLGPLGLLPISSMESLQTLHINR-IWIESESCESLTKMINLTEL 276
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
+N+ +G+K + + NL LD+ + I + + D
Sbjct: 277 YISKND-FGNEGLKWISSMKNLRVLDIGNHSII---------------------DALGDE 314
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
K ++ LT L L IS ++T SG YL L+ + +FI
Sbjct: 315 AAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFI-------------------- 354
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
+G + LDS+S+L L YLN++ Q+S G + SK+ L +L++
Sbjct: 355 ------DGNEICDDFLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDIS----- 403
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--GLRHL-SG 348
EC+ G E L L + L L LS T + S G ++
Sbjct: 404 -ECV-----------------GCCSEVLKQLGLMKQLTSLHLSLTDLVESVEGFKYWHKN 445
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L NL + ++F G+ D +++ ++GL +LK L+L + +TD + L + L +L LFG
Sbjct: 446 LINLTYLEMNFCGLDDNAIKWISGLPNLKYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGN 505
Query: 409 RITDSGAAYLRNF 421
+T+ L +
Sbjct: 506 NMTEKKTKRLEKY 518
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 158/349 (45%), Gaps = 41/349 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDG------------------ 97
+L S+++S + + + HL L SLD N C + D
Sbjct: 175 ENLTSLNISSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNND 234
Query: 98 ----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
GL + + +L +L R I ++ ++ +INL +L + + + GL +
Sbjct: 235 LGPLGLLPISSMESLQTLHINR-IWIESESCESLTKMINLTELYISKNDFGNEGLKWISS 293
Query: 154 LMKLESLNI---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
+ L L+I + + D K ++ LT L L IS ++T SG YL L+ + +F
Sbjct: 294 MKNLRVLDIGNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLF 353
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
I + I F + +SL++LT LN+ G ++ + S+S L L L+++ C G
Sbjct: 354 IDGNEICDDFLDSI--SSLKELTYLNISGGQISVKGVKSISKLPRLTILDISECV----G 407
Query: 271 C--EKFSKIGSLKVLNLGFNEITD-----ECLVHL-KGLTNLESLNLDSCGIGDEGLVNL 322
C E ++G +K L +TD E + K L NL L ++ CG+ D + +
Sbjct: 408 CCSEVLKQLGLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWI 467
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
+GL NLK L+L + ++HL G+ LE ++L +++ ++L
Sbjct: 468 SGLPNLKYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLE 516
>gi|357134265|ref|XP_003568738.1| PREDICTED: uncharacterized protein LOC100844673 [Brachypodium
distachyon]
Length = 547
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 41/322 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+TD ++ L LT L+ L I S++T+ G + LK + S + + + + RL L
Sbjct: 126 MTDKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHVTRLPPL----P 181
Query: 228 SLQKLTLLN----------------LEGCPVTAACLDSLSAL------GSLFYLNLNRCQ 265
+LQ L + N LE V AA ++ + SL YL+++ C
Sbjct: 182 NLQHLNMSNCTIHSIRDGDSEVNVPLEKFTVCAASFGNIFEVFSSIQGSSLLYLDMSGCS 241
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNLTG 324
LS+ F K+ ++ L+L F+ ITD + H+ + NL L+L + GI + L G
Sbjct: 242 LSN--LHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQAPCILAG 299
Query: 325 -LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-----------GSLRKLAG 372
+ NL L L+ T++ S L ++S + +L I+LS T I S+ L
Sbjct: 300 TVPNLSSLSLAYTEIDDSALAYISMMPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEH 359
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
L L+SLNL+ ++D + L S + +L L ++D L + NL L CG
Sbjct: 360 LMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDFLSDPALHALSSASNLTHLGFCGN 419
Query: 433 GLTDAGVKHIKDLSSLTLLNLS 454
L+D+G+ + L +L+LS
Sbjct: 420 ILSDSGLLQFVPPAKLRVLDLS 441
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 186/459 (40%), Gaps = 89/459 (19%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ + L R L+ LE FR +++++ L V+ +W+ + S L
Sbjct: 44 LPGQLADALLQRLAARRLLSPSLLEVFRH-SVEEIDLSGNIAVDAEWLAYLGS-FRYLRV 101
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L+ +V +S + L D I ++D L L+ L+ L L + IT
Sbjct: 102 LKLADCKNVNNSAVWALSDLGG---------IHMTDKTLRSLQVLTRLEHLDIW-GSEIT 151
Query: 121 AQG---MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMK- 174
+G +KAF L + + + TR L L L+ LN+ C + I D D +
Sbjct: 152 NEGASVLKAFTRL-SFLNVSWTHVTR-------LPPLPNLQHLNMSNCTIHSIRDGDSEV 203
Query: 175 --PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL---CSMIIRLFCLHVFLTSL 229
PL T C+ + + SS++++ CS L LH+F +
Sbjct: 204 NVPLEKFT-------VCAASFGNIFEVFSSIQGSSLLYLDMSGCS----LSNLHIF-EKM 251
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG------CEKFSKIGSLKVL 283
+ + L+L +T A + ++ +G +NL L + G C + +L L
Sbjct: 252 KHIEHLDLSFSRITDAAIQHVANIG----MNLRHLSLKNTGITSQAPCILAGTVPNLSSL 307
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGI--------GDEGLVNLTGLCNLKCLE--- 332
+L + EI D L ++ + +L ++L I E + ++ L +L LE
Sbjct: 308 SLAYTEIDDSALAYISMMPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEHLMYLESLN 367
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L D T +SD + LA ++K L L + ++D L
Sbjct: 368 LED------------------------TALSDEVIPPLASFRAIKYLYLKSDFLSDPALH 403
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
AL+S + LTHL G ++DSG LR L++ G
Sbjct: 404 ALSSASNLTHLGFCGNILSDSGLLQFVPPAKLRVLDLSG 442
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 48/171 (28%)
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--------- 435
+TD L +L LT L HLD++G+ IT+ GA+ L+ F L L + +T
Sbjct: 125 HMTDKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHVTRLPPLPNLQ 184
Query: 436 -----DAGVKHIKD------------------------------LSSLTLLNLSQNCNLT 460
+ + I+D SSL L++S C+L+
Sbjct: 185 HLNMSNCTIHSIRDGDSEVNVPLEKFTVCAASFGNIFEVFSSIQGSSLLYLDMS-GCSLS 243
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTAN 510
+ L + + + L++S SRIT A ++H+ + NLR L+L++ +T+
Sbjct: 244 N--LHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQ 292
>gi|87307769|ref|ZP_01089912.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
gi|87289383|gb|EAQ81274.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
Length = 1283
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 121/506 (23%), Positives = 200/506 (39%), Gaps = 82/506 (16%)
Query: 9 QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD 68
++ N ++++ +T AF DC LQ + L P V D+W
Sbjct: 855 KVTNLMLWATPITREDFLAFADCKLQGVLLSYTP-VKDEW-------------------- 893
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
L HL L F+F QI D GL + + +L + IT G+ F
Sbjct: 894 -----LTHLTHPEAFTDLGFSFT-QIGDEGLAAFQNSKKIVNLHLE-HTKITDVGLAYFH 946
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L + L + + G++ K KLE L++ N + + L++ +
Sbjct: 947 DCRELKSIRLRQTSVTDAGVLPFKHCSKLEELSLATTNVTA-------AAVEELRAALPN 999
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
C K+T G A + + + ++ S+ + LN G + +A +
Sbjct: 1000 C-KITWDGDAKTESPEEKNSDNLAAKYVL----------SIGGIVRLNGGGTDIHSAT-E 1047
Query: 249 SLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLES 306
A L ++N N C+ +DDG F+ + L + F +T L + K +L+
Sbjct: 1048 LPPAPFRLTHVNFNLCKKATDDGLAVFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKE 1107
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
LN CN + S+GL L+ NLE I+L +
Sbjct: 1108 LN-----------------CNY-------SPYVSAGLPLLANCKNLEKISLMGVKFTREE 1143
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
LR +A L L +NL A + D L+ T+ LT+L+ +I D G A +N L+
Sbjct: 1144 LRPIAELP-LTFVNLGATPVQDEWLSDFTNAESLTYLNFASTKIGDKGLAAFQNCNALQQ 1202
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L + +TD G+ + D L +L L QN + D L L + +S +R+T+A
Sbjct: 1203 LSLQDTNITDEGLAYFYDCRDLEILQL-QNTKVRDFGLLRFKSCQKLKQVEISKTRVTAA 1261
Query: 487 GLRHLKPLKNLRSLTLESCKVTANDI 512
G+ LK +L C V +D+
Sbjct: 1262 GVDELK-------KSLPYCTVVWDDV 1280
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 28/214 (13%)
Query: 279 SLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS 334
+K+ ++ FN E T+E ++E+L L + I +GL + NLK L L
Sbjct: 779 PVKLKSVFFNQAIECTNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALP 838
Query: 335 DTQVGSSGLRHLS---GLTNL--------------------ESINLSFTGISDGSLRKLA 371
SGL HLS +TNL + + LS+T + D L L
Sbjct: 839 HCDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFADCKLQGVLLSYTPVKDEWLTHLT 898
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
+ L QI D GLAA + + +L L +ITD G AY + + L+S+ +
Sbjct: 899 HPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQ 958
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+TDAGV K S L L+L+ N+T +E
Sbjct: 959 TSVTDAGVLPFKHCSKLEELSLA-TTNVTAAAVE 991
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 106/256 (41%), Gaps = 14/256 (5%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+S DG + F + +LKVL L + L HL + +L L + I E +
Sbjct: 818 ISADGLKHFRRCRNLKVLALPHCDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFAD- 876
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
C L+ + LS T V L HL+ + SFT I D L + +L+L+ +
Sbjct: 877 CKLQGVLLSYTPVKDEWLTHLTHPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTK 936
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
ITD GLA L + L +TD+G ++ L L + +T A V+ ++
Sbjct: 937 ITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKHCSKLEELSLATTNVTAAAVEELR-- 994
Query: 446 SSLTLLNLSQNCNLTDKTLE----------LISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
++L ++ + + ++ E + + G+V LN + I SA P +
Sbjct: 995 AALPNCKITWDGDAKTESPEEKNSDNLAAKYVLSIGGIVRLNGGGTDIHSATELPPAPFR 1054
Query: 496 NLRSLTLESCKVTAND 511
L + CK +D
Sbjct: 1055 -LTHVNFNLCKKATDD 1069
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 109/514 (21%), Positives = 182/514 (35%), Gaps = 83/514 (16%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
RD ++ IF ++ + + + +F D QY + S+G V
Sbjct: 715 RDGARAIFKDIEFMILPNDAARTSFPGKDNPDYLAAQY----------VRSRGGR---VG 761
Query: 64 LSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
LSG + S I L+S+ FN I+ ++ ++ +L+ I+A
Sbjct: 762 LSGHEEEYGSTTILPSPPVKLKSVFFNQAIECTNEEFAVFADCQDIEALTLWAVPTISAD 821
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
G+K F NL L L C I GL +L K+ +L + W IT D
Sbjct: 822 GLKHFRRCRNLKVLALPHCDNIGSGLSHLSECDKVTNLML-WATPITREDF--------- 871
Query: 183 KSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV 242
+ F C KL + L PV
Sbjct: 872 -------------------------LAFADC-----------------KLQGVLLSYTPV 889
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 302
L L+ + L + Q+ D+G F + L+L +ITD L +
Sbjct: 890 KDEWLTHLTHPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCR 949
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
L+S+ L + D G++ L+ L L+ T V ++ + L L + +++ G
Sbjct: 950 ELKSIRLRQTSVTDAGVLPFKHCSKLEELSLATTNVTAAAVEELRAA--LPNCKITWDGD 1007
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
+ K S NL A+ + G G+ L+ G I + F+
Sbjct: 1008 A-----KTESPEEKNSDNLAAKYVLSIG--------GIVRLNGGGTDIHSATELPPAPFR 1054
Query: 423 -NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
+ +C TD G+ + + L + N+T + L L LN + S
Sbjct: 1055 LTHVNFNLCKKA-TDDGLAVFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKELNCNYS 1113
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
SAGL L KNL ++L K T +++ +
Sbjct: 1114 PYVSAGLPLLANCKNLEKISLMGVKFTREELRPI 1147
>gi|290984031|ref|XP_002674731.1| predicted protein [Naegleria gruberi]
gi|284088323|gb|EFC41987.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 123/237 (51%), Gaps = 1/237 (0%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ ++G + SK+ L L + NEI DE ++ L L SL++ IG EG ++ L
Sbjct: 110 IGNEGAKYISKLKQLTHLYILNNEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISEL 169
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L++S +G+ G +H++ + L +N+S I + + L L L +
Sbjct: 170 KQLTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNN 229
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
I G ++ + LT L++ I GA Y+ K L L+I + GV++I ++
Sbjct: 230 IDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEM 289
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ LT+L+ S N N+ D+ + IS + L +L++SN+ I++ G++ ++ +K+L L +
Sbjct: 290 NQLTILSASHN-NIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 112/231 (48%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ L++LT L + + +S L L L+++ + +G + S++ L L+
Sbjct: 117 YISKLKQLTHLYILNNEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLD 176
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I E H+ + L LN+ + IG EG + L L CL + + + G +
Sbjct: 177 ISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAK 236
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++S + L +N+S+ I + ++ L L L++ QI G+ + + LT L
Sbjct: 237 YISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILS 296
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
I D GA Y+ K L +L+I +++ GVK I+++ LT+LN+ Q
Sbjct: 297 ASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNIRQ 347
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 4/235 (1%)
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
A + L L L+ LN ++ D+G + S++ L L++ +N I E ++ L
Sbjct: 115 AKYISKLKQLTHLYILN---NEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQ 171
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L +L++ IG EG ++ + L L +S +G G +++ L L + + I
Sbjct: 172 LTNLDISVNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNID 231
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
+ ++ + L LN+ I G ++ L LT LD+ +I G Y+
Sbjct: 232 VEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQ 291
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
L L + D G K+I ++ LT L++S N ++++ ++ I + L LN+
Sbjct: 292 LTILSASHNNIGDEGAKYISEMKQLTNLDISNNS-ISNEGVKCIEEMKHLTVLNI 345
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 44/277 (15%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + G +++ L LT L + NN I +G K + L LV LD+ G +
Sbjct: 110 IGNEGAKYISKLKQLTHL-YILNNEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISE 168
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L +L +L+I N I + ++ + L L IS + + G Y+ L
Sbjct: 169 LKQLTNLDIS-VNHIGAEGAQHIAEMNQLTILNISTNNIGYEGAKYIGKLK--------- 218
Query: 214 SMIIRLFCLHVF-----------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
+L CL +F ++ +++LT LN+ + +S L L L+++
Sbjct: 219 ----QLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDIS 274
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
Q+ G + +++ L +L+ N I DE ++ + L +L++ + I +EG
Sbjct: 275 INQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISNNSISNEG---- 330
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
+KC+E ++HL+ L + + SF
Sbjct: 331 -----VKCIE---------EMKHLTVLNIRQPVMFSF 353
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L+S+D+S +++ G ++ + L +LD + I G +H+ ++ LT L+
Sbjct: 143 SELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVN-HIGAEGAQHIAEMNQLTILNI 201
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNC 167
NN I +G K L L C I ++++G + +L LNI + N
Sbjct: 202 STNN-IGYEGAKYIGKLKQLT------CLTIFNNNIDVEGAKYISEMKQLTDLNISY-NN 253
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I K +S L L L IS +++ G+ Y +
Sbjct: 254 IDVEGAKYISELKQLTDLDISINQIGAKGVQY--------------------------IA 287
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ +LT+L+ + +S + L L+++ +S++G + ++ L VLN+
Sbjct: 288 EMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
>gi|449019210|dbj|BAM82612.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]
Length = 2325
Score = 94.0 bits (232), Expect = 2e-16, Method: Composition-based stats.
Identities = 100/301 (33%), Positives = 144/301 (47%), Gaps = 50/301 (16%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCL 331
+S +L+ L++ +TD L H ++ LE L+L C I D GL +L L +L+ L
Sbjct: 2014 YSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLREL 2073
Query: 332 ELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
+L+DT V S+ G L+ L L ++LS+T + + L+ L L+ L LDAR I+D
Sbjct: 2074 DLADTNVTSAVGASLLARLRQLRRLDLSYTAVQSNITKSLSTLEQLEWLGLDARLISDDA 2133
Query: 391 LA-------------------ALTSLT-------------GLTHLDLFGARITDSGAAYL 418
L AL+S T L HLDLFGA ITD G +YL
Sbjct: 2134 LQVEENEASPEPVSSRDVAAPALSSATVAVHLHRRIGLPRHLRHLDLFGAHITDRGMSYL 2193
Query: 419 -RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTG---- 472
+ + SLE+C G LTDA ++ I + L L LN+SQN ++D L + L
Sbjct: 2194 VQACPYVESLEVCSGALTDAALRLIAQHLPYLRALNISQNMRISDAGLREYARLAQVQQD 2253
Query: 473 ------LVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESCKVTANDIKRLQS--RDLPNL 523
L +LN++ + +T GL L P L LR L + C + +QS R P L
Sbjct: 2254 LGQPHLLETLNLAFTAVTWRGLAVLLPTLPYLRLLCVRGCNKDSFSAVSVQSLERMRPGL 2313
Query: 524 V 524
V
Sbjct: 2314 V 2314
Score = 49.7 bits (117), Expect = 0.004, Method: Composition-based stats.
Identities = 112/425 (26%), Positives = 178/425 (41%), Gaps = 81/425 (19%)
Query: 61 SVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
++DLSG S +TD GLI L L+ + C+ I G+ L R S L LS
Sbjct: 1713 TLDLSGCSHITDRGLIGLAPHLRQLKECILDGCLGIWGPGVRALLRLCSKLERLSLAGCR 1772
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++T + AF GL + V C R G LK L++ C +TD + L
Sbjct: 1773 SLTDE---AFQGLASGVARG--PCQRTSAGRFALK------HLDLSSCIHLTDEGLGAL- 1820
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
+ +L +K DS ++ ++ + L +
Sbjct: 1821 ----VAALSTPEAKAGDSEDTAIESVATTEASAGLVA----------------------- 1853
Query: 238 EGCPVTAACL-----DSLSALGSLFYLNLNRC-QLSDDGCEKFSKI--GSLKVLNLGFNE 289
P+T L + S+ G+L L++ C +L D + SL+V++L +
Sbjct: 1854 ---PLTTEALLYSSSSNSSSSGTLETLSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTR 1910
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
IT L L L L+SL+L CG G+ L + T+ G L
Sbjct: 1911 ITGAVLQELGALPQLQSLSL--CGCGE----------TLSVESDAATRFGEELALPGKQL 1958
Query: 350 TNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTH------ 402
+L+ + ++DG L LAGL+S ++ + RQ AA+ L TH
Sbjct: 1959 VHLD-LGKCAQLVTDGFLAALAGLASGRRTHHQYNRQQYQQNPAAVERLVHATHGVYSSR 2017
Query: 403 -----LDLFGARITD-SGAAYLRNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQ 455
L + G R+TD S + Y+R F+ L L++ L TDAG++H++ L SL L+L+
Sbjct: 2018 DTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRELDLA- 2076
Query: 456 NCNLT 460
+ N+T
Sbjct: 2077 DTNVT 2081
Score = 42.4 bits (98), Expect = 0.63, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
+ S +L S+ + G +TD L H ++ L+ LD + C I+D GLEHL+ L +L
Sbjct: 2013 VYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRE 2072
Query: 111 LSFRRNNAITAQG 123
L N +A G
Sbjct: 2073 LDLADTNVTSAVG 2085
>gi|290999054|ref|XP_002682095.1| predicted protein [Naegleria gruberi]
gi|284095721|gb|EFC49351.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 129/254 (50%), Gaps = 23/254 (9%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ L+KL L++ + A +S + +L +LN++ ++ +G + S++ L L+
Sbjct: 79 YISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLD 138
Query: 285 LGFNEITDECLVHLKGLTNLESLNLD----------------------SCGIGDEGLVNL 322
+G N++ DE ++ L L L +L++D +C I DE L
Sbjct: 139 IGDNKVGDEEVILLSELDQLTALSIDRINPDGINAISKMNKLVSLSINNCTILDE-CEEL 197
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
+ + L L++ + + G++ LSGL+ L +N+S D + ++ + L L ++
Sbjct: 198 SKMKQLTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVN 257
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
QI+D G+ +L L LT LD+ ITD G+ YL + L +LE+ L+ GVKH+
Sbjct: 258 DCQISDDGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHM 317
Query: 443 KDLSSLTLLNLSQN 456
+++ LT L++ N
Sbjct: 318 INMNQLTALSIRHN 331
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 158/325 (48%), Gaps = 15/325 (4%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESL 160
+ NLT L+ ++ G+K+ L +L+ L C +G G + L KLESL
Sbjct: 35 MKNLTHLTLG-SHFTNEDGLKSIGTLKHLIHL----CVDFNGIGLEGANYISQLEKLESL 89
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
+I++ N I K +S + L L +S +++ G + + + + I + +
Sbjct: 90 SIRY-NYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEE 148
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
+ L+ L +LT L+++ + ++++S + L L++N C + D+ CE+ SK+ L
Sbjct: 149 V--ILLSELDQLTALSID--RINPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQL 203
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
+L++ N I+ + + L GL+ L LN+ S GD+G +++ + L L ++D Q+
Sbjct: 204 TLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISD 263
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G++ L L L +++S I+D L L L +L ++ +++ G+ + ++ L
Sbjct: 264 DGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQL 323
Query: 401 THLDLFGARITDSGAAYLRNFKNLR 425
T L + + T FK L+
Sbjct: 324 TALSIRHNQFTFVQNEVFSQFKQLK 348
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 148/328 (45%), Gaps = 28/328 (8%)
Query: 225 FLTSLQKLTL--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
FL S++++ + L + A + + +L +L L ++DG + + L
Sbjct: 5 FLESIERVQIKFLTFNYNTLGAKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIH 64
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L + FN I E ++ L LESL++ IG EG ++ + L L +S ++G G
Sbjct: 65 LCVDFNGIGLEGANYISQLEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEG 124
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ +S + L +++ + D + L+ L L +L++D +I G+ A++ + L
Sbjct: 125 AKAISQMKQLTYLDIGDNKVGDEEVILLSELDQLTALSID--RINPDGINAISKMNKLVS 182
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN------ 456
L + I D L K L L+I G++ GVK + LS LT LN+S N
Sbjct: 183 LSINNCTILDE-CEELSKMKQLTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDG 241
Query: 457 -----------------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
C ++D ++ + L L L++SN+ IT G +L L+ L +
Sbjct: 242 AKSISEIKQLTELFVNDCQISDDGMKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTA 301
Query: 500 LTLESCKVTANDIKRLQSRDLPNLVSFR 527
L + + +++ +K + + + +S R
Sbjct: 302 LEVNNNELSYQGVKHMINMNQLTALSIR 329
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 145/286 (50%), Gaps = 15/286 (5%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
LK L+ L + C+ + GLE ++ L L SLS R N I A+G K + + L
Sbjct: 53 LKSIGTLKHL-IHLCVDFNGIGLEGANYISQLEKLESLSIRYN-YIGAEGAKVISEMKTL 110
Query: 134 VKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L++ RI G G + + +L L+I N + D ++ LS L L +L S ++
Sbjct: 111 TWLNV-SSNRIGGEGAKAISQMKQLTYLDI-GDNKVGDEEVILLSELDQLTAL--SIDRI 166
Query: 193 TDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
GI + ++ + S+ C+++ C L+ +++LTLL+++ ++A + LS
Sbjct: 167 NPDGINAISKMNKLVSLSINNCTILDE--CEE--LSKMKQLTLLDIKSNGISAKGVKQLS 222
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L L +LN++ DDG + S+I L L + +I+D+ + L L L L++ +
Sbjct: 223 GLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDGMKSLGDLNELTILDISN 282
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
I DEG + LT L L LE+++ ++ G++H+ + L ++++
Sbjct: 283 NYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTALSI 328
>gi|72385469|ref|XP_846402.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366571|emb|CAB95333.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 203/477 (42%), Gaps = 68/477 (14%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + H+ +C +L +L+ FC I+D
Sbjct: 854 LSNTRINDENIQHVSECKSLNTLNLAFCKDITD--------------------------- 886
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + + L +L+L+ C I G+ L L K+ L++K C + DSD + S L N K
Sbjct: 887 VTALSTITMLEELNLDCCHNIRKGIETLGKLPKVRILSMKECY-MGDSDAQQCSILGNSK 945
Query: 184 SLQ----------ISCSKVTDSGIAYLKGLSISSVIFIL----CSMIIRLFCLHVFLTSL 229
SL IS + S IA L+ L + SV I S + RL L++ T +
Sbjct: 946 SLVKLNLERSMGFISVKAL--SNIATLEELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDI 1003
Query: 230 -----------QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
+ L LNL C + LS+L +L LN+N C G E K+
Sbjct: 1004 NDDVTKNISESKSLQSLNLSHCKWVTD-ISVLSSLSTLEELNVNFCNGIRKGWESLGKLP 1062
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSD 335
L+V L IT + + L L L C E L ++T + ++ LE +
Sbjct: 1063 LLRVAILSDTNITAKDIACLSSCKKLVKLQFFRC----EKLSDVTVVYEIQSLEELIVRK 1118
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 394
G GL L L+ L ++L SD S+ + SL LN++ R ++TD L
Sbjct: 1119 YSDGLKGLNALGTLSRLRFLHLRNARGSDISVESIGTSKSLVRLNIETREELTDA--TPL 1176
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+++T L L L T GA L LRSL++ ++D + I +T LNL
Sbjct: 1177 SNITSLEELSLRDCGDTLEGAWTLGKLPRLRSLDLGLSDISDNTLDEICLSRFITSLNLR 1236
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
N LTD + IS LT L LN+S ++G L L LR L LES VT D
Sbjct: 1237 YNFKLTD--ISSISNLTALEELNLSGCHRITSGWEALSELPRLRVLNLESTSVTTRD 1291
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 142/589 (24%), Positives = 238/589 (40%), Gaps = 141/589 (23%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+
Sbjct: 354 LDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGI 413
Query: 106 SNLTSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLD 137
+ +L R +N M + ++ L +L+
Sbjct: 414 GVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVKVSLDNCAGFGDMTLLSSIVTLEELN 473
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD--------------MKPLSGLTNLK 183
+++C I G+ L L L LN+K + I+ D ++ +GL+N++
Sbjct: 474 IQKCADIISGVGCLGTLPYLRVLNVKEVH-ISSLDFIGIGASKSLLQLTLESFTGLSNVE 532
Query: 184 SLQ--ISCSKVT-------DSGI------AYLKGLSISSV--------IFILCSMIIRLF 220
+L ++ K++ D+GI LK L +S L ++ L
Sbjct: 533 ALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLN 592
Query: 221 CLHVF-------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
H + ++SL+ L LNL C A +++ L L L+ ++D
Sbjct: 593 LSHCWKMTNVSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHITDRDISH 652
Query: 274 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTGLC--N 327
FSK +L L+L F N++ D + L +T LE LNLDSC +GL L LC N
Sbjct: 653 FSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLN 710
Query: 328 LKCLELSDTQVGS------------------SGLRHLSGLTNLESINLSFTGISDGSLRK 369
+K ++L D+ +GS G+ LS L LE +NL + +
Sbjct: 711 IKGVQLEDSVIGSLGNGNSFVRLSLENCKGFGGVTPLSNLVTLEELNLHYCDKVTSGMGT 770
Query: 370 LAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGLTHLDL 405
L L L+ L+L Q+ D T ++A+ SLT L L++
Sbjct: 771 LGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSHCKKITSISAIASLTALEELNI 830
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
SG LR + + D ++H+ + SL LNL+ ++TD T
Sbjct: 831 DNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIQHVSECKSLNTLNLAFCKDITDVT-- 888
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+S +T L LN+ G+ L L +R L+++ C + +D ++
Sbjct: 889 ALSTITMLEELNLDCCHNIRKGIETLGKLPKVRILSMKECYMGDSDAQQ 937
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 147/548 (26%), Positives = 227/548 (41%), Gaps = 90/548 (16%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
+ C+ V+L D A D G Y G I ++ L++ LS + D
Sbjct: 151 TECIHRVTLYNAADNAFSDE--GLYEGALSSLCGRIQAKK---LTIALSKDENFD----- 200
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAIT--AQGMKAFAGLI 131
L+ S L+ L+ I+ G L ++ L+NL L R NN A+ + + L
Sbjct: 201 LQGVSKLKQLE-ELRIEYPHGKLVNMISLNNLDMLKRLRLRSNNIDNNDARHLFSVGTLE 259
Query: 132 NLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L D + T I L NLK L +L S NI DS ++ +S L L +S
Sbjct: 260 ELAITDTMQLTNIREISRLTNLKCL-ELNSTNID------DSCVEEISACVKLSKLSVSE 312
Query: 189 CSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
C+ VTD S +A L+ L++S+ C + + L + L +L +L+L G PV
Sbjct: 313 CNNVTDATPISQLAALEELNLSN-----CHITKGIGTLGMLL----RLRILDLSGVPVED 363
Query: 245 ACLDSLSALGSLFYLNLNRC-QLSD---------------DGCEKFSK-------IGSLK 281
CL L GSL LN++ C QL+D +GC + ++ + L+
Sbjct: 364 NCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVVWALPRLR 423
Query: 282 VLNLGFNEIT------------------DEC-----LVHLKGLTNLESLNLDSCGIGDEG 318
+L++ ++ D C + L + LE LN+ C G
Sbjct: 424 ILHMKDVHLSEPSLDSVGTGGLLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISG 483
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 377
+ L L L+ L + + + S + +L + L SFTG+S+ + LA + +L+
Sbjct: 484 VGCLGTLPYLRVLNVKEVHISSLDFIGIGASKSLLQLTLESFTGLSN--VEALANILTLE 541
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L+L D G+ L +L L LDL G + L + + SL +
Sbjct: 542 KLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL-SHCWKMT 600
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
V HI L +L LNLS NC + E I L L +SN+ IT + H KNL
Sbjct: 601 NVSHISSLEALNELNLS-NCIRINAGWEAIEKLQQLHVAILSNTHITDRDISHFSKCKNL 659
Query: 498 RSLTLESC 505
+L L C
Sbjct: 660 VTLDLSFC 667
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 30/163 (18%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
+ L LE LN+ C+ IT S + LS L L+ L + + VT Y
Sbjct: 1247 ISNLTALEELNLSGCHRIT-SGWEALSELPRLRVLNLESTSVTTRDGGY----------- 1294
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDD 269
+++ + L LNLE C +T A+CL ++ L L ++ C
Sbjct: 1295 --------------YISRCKSLVTLNLESCDMTDASCLANIKTLEEL---HIGECDELTQ 1337
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
G + L++LNL + ITDE L ++ +E LNL C
Sbjct: 1338 GFSALFTLPRLRILNLMDSLITDEDLREIQPPHTIEELNLSYC 1380
>gi|168030611|ref|XP_001767816.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680898|gb|EDQ67330.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 628
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 135/458 (29%), Positives = 212/458 (46%), Gaps = 51/458 (11%)
Query: 18 RCLTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
R +T+ L + C L+ L L G+ D + +A L +DLS ++V+D GL
Sbjct: 145 RDVTDSGLSSLSRCKGLRILGLKYCSGLGDFGIQNVAIGCQRLYIIDLSFTEVSDKGLAS 204
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLV 134
L +L+ L CI ++D GL LR G +L L+ + +++QG+ G + L
Sbjct: 205 LALLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVSSQGIIELTGSSVQLQ 264
Query: 135 KLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSK 191
+L+L C I L + + L L+ + + C I DS++ + SG LK L +S C
Sbjct: 265 ELNLSYCKLISNVLFASFQKLKTLQVVKLDGC-VIGDSNLSLIGSGCIELKELSLSKCQG 323
Query: 192 VTDSGIAYLKGLSISSV----IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
VTD+G+ G+ S + + C I L TS L L +E C + A
Sbjct: 324 VTDAGVV---GVVTSCTGLQKLDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTA-- 378
Query: 248 DSLSALG-SLFY---LNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-L 301
+ L +G S Y L+L C L+D+G + + L++L +G+ +IT L +
Sbjct: 379 EGLIMIGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVGYCMDITYAGLASIGATC 438
Query: 302 TNLESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 359
TNL L+ S GI DEG+ + SG L+ +NLS+
Sbjct: 439 TNLRELDCYRSVGISDEGVAAIA-----------------------SGCKRLKVVNLSYC 475
Query: 360 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAA 416
+ I+D SL LA LS L L L A QIT G++ + S L LD+ + + D G
Sbjct: 476 SSITDASLHSLALLSDLVQLELRACSQITSAGISYIGASCKHLRELDVKRCKFVGDHGVL 535
Query: 417 YL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L R +NLR + + +TDAG+ I ++S + + L
Sbjct: 536 ALSRGCRNLRQVNLSYTAVTDAGMMAIANMSCIQDMKL 573
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 135/522 (25%), Positives = 231/522 (44%), Gaps = 105/522 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ ++ LD + C++++D + L ++ TS AI +G AG +LV+
Sbjct: 53 LRRYPQIECLDLSSCVEVTD---QCLAAVAKFTSSRLISIKAIRTKGF-TIAGFRSLVEC 108
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+ +++ +C + D+++ LS L +L+ L++ SC VTDS
Sbjct: 109 RF------------------LQDVDVTFCTQVGDAEVIALSELRHLQKLKLDSCRDVTDS 150
Query: 196 GIAYL---KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSA 252
G++ L KGL I + + CS + F + Q+L +++L V+ L SL+
Sbjct: 151 GLSSLSRCKGLRILGLKY--CSGLGD-FGIQNVAIGCQRLYIIDLSFTEVSDKGLASLAL 207
Query: 253 LGSLFYLNLNRC-QLSD-------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT-N 303
L L L+L C ++D +GC+ K+ K LN ++ + ++ L G +
Sbjct: 208 LKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLN-----VSSQGIIELTGSSVQ 262
Query: 304 LESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS-FT 360
L+ LNL C I + + L L+ ++L +G S L + SG L+ ++LS
Sbjct: 263 LQELNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNLSLIGSGCIELKELSLSKCQ 322
Query: 361 GISD-GSLRKLAGLSSLKSLNLD-ARQITDTGLAAL-TSLTG------------------ 399
G++D G + + + L+ L+L R ITDT L A+ TS TG
Sbjct: 323 GVTDAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTAEGLI 382
Query: 400 --------LTHLDLFGARITDSGAAYLRNFKNLRSLEI-----------------CGG-- 432
L LDL + D+G + + LR L++ C
Sbjct: 383 MIGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVGYCMDITYAGLASIGATCTNLR 442
Query: 433 --------GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSR 482
G++D GV I L ++NLS ++TD +L ++ L+ LV L + + S+
Sbjct: 443 ELDCYRSVGISDEGVAAIASGCKRLKVVNLSYCSSITDASLHSLALLSDLVQLELRACSQ 502
Query: 483 ITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
ITSAG+ ++ K+LR L ++ CK + SR NL
Sbjct: 503 ITSAGISYIGASCKHLRELDVKRCKFVGDHGVLALSRGCRNL 544
>gi|51850107|dbj|BAD42395.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 538
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 176/372 (47%), Gaps = 23/372 (6%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLS 204
G++ LE L + TD D++ L +LK+L +S C +T +GIA+L L
Sbjct: 115 GVLRAGNYPALEKLTL--AGTFTDDDLRGLP--ASLKALDLSRCRGPITAAGIAHLSRLP 170
Query: 205 ISSVIF---ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
+ + + + RL H LTS LN+ + +L+A L LN+
Sbjct: 171 LVRLNVRNKRIGAEGARLLANHPTLTS------LNVSNGRIGPEGAQALAANTRLTTLNV 224
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
+ ++ G + + +L+ L++ N I DE L T L +L+ + GIG +G
Sbjct: 225 SGNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARELAACTQLTTLDANRNGIGVDGATA 284
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L L L + ++G +G+ L+ L ++N+ TG+ ++ LA +L L L
Sbjct: 285 LAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRL 344
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
D I + G AL + T LT L L +RI GA L L +L++ + DAGV+
Sbjct: 345 DGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRT 404
Query: 442 IKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ ++L L++ +N NL D + + L +G T L +L++S + I G + L +
Sbjct: 405 LSANATLVWLSVRRN-NLEDASAVSLAAGKT-LTTLDISGNGIQDQGAKALA-----ANP 457
Query: 501 TLESCKVTANDI 512
TL + V++NDI
Sbjct: 458 TLTTLDVSSNDI 469
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 131/517 (25%), Positives = 216/517 (41%), Gaps = 89/517 (17%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGPITAAGIAHLS 167
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
N I + K L+ L+SL +S +++ D G L
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL----------------------- 261
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
AAC L L+ NR + DG + +L L
Sbjct: 262 --------------------AACTQ-------LTTLDANRNGIGVDGATALAASRTLTSL 294
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+G NEI D ++ L L +LN++S G+G +G+ L L L L +G++G
Sbjct: 295 AIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLDGNDIGNAGA 354
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L+ T+L +++L + I + LA + L +L+L I D G+ L++ L L
Sbjct: 355 TALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGVRTLSANATLVWL 414
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+ + D+ A L K L +L+I G G+ D G K + +LT L++S N ++ +
Sbjct: 415 SVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTLDVSSN-DIRNAG 473
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
++ LVSL++ N+R+ +G R L + L SL
Sbjct: 474 ARALAANARLVSLDLRNNRMEESGTRALLANRTLSSL 510
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 121/302 (40%), Gaps = 29/302 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L C+ L +LD N I G L LTSL+ N
Sbjct: 242 TLRSLDVSDNRIGDEGARELAACTQLTTLDANRN-GIGVDGATALAASRTLTSLAI-GGN 299
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+ A A L L++E G+ L L L + N I ++ L+
Sbjct: 300 EIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWLRLD-GNDIGNAGATALA 358
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
T+L +L + S++ G L + KLT L+L
Sbjct: 359 ASTSLTTLHLEHSRIGAEGAQALAANT--------------------------KLTTLDL 392
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+ A + +LSA +L +L++ R L D + +L L++ N I D+
Sbjct: 393 GYNDIGDAGVRTLSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKA 452
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L L +L++ S I + G L L L+L + ++ SG R L L S+ +
Sbjct: 453 LAANPTLTTLDVSSNDIRNAGARALAANARLVSLDLRNNRMEESGTRALLANRTLSSLGV 512
Query: 358 SF 359
S
Sbjct: 513 SL 514
>gi|254416421|ref|ZP_05030174.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176859|gb|EDX71870.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 477
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 217/415 (52%), Gaps = 40/415 (9%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGL 130
G +KD S L L + + + + + LS LTSL+ + NN IT +
Sbjct: 84 GYNQIKDVSPLSGLTNLTVLNLWNNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTN 143
Query: 131 INLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ ++ L+ + T I GL +L GL+ L IK D+ PLSGLTNL L ++
Sbjct: 144 LTVLNLNNNQITDISPLSGLTSLTGLI-LGGNQIK--------DVSPLSGLTNLTVLNLN 194
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+++TD I+ L GL+ +V+ + + I + L+ L LT+L L +T +
Sbjct: 195 NNQITD--ISPLSGLTSLTVLILYSNQITDISS----LSGLTSLTVLILSDNQITD--IS 246
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
LS L +L L LN Q++D S + +L L L N+ITD + L GLTNL++L
Sbjct: 247 PLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALY 302
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L++ I D + L+GL NL L L+ Q+ + + LSGLTNL+++ L+ I+D +
Sbjct: 303 LNNNQITD--ISPLSGLTNLDALYLNSNQI--TDISLLSGLTNLDALYLNSNQITD--IS 356
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
L L++L L LD QITD ++ L+ LT LT L L +ITD + L NL L
Sbjct: 357 PLLELTNLNYLILDNNQITD--ISPLSGLTNLTILILDNNQITD--ISPLSGLTNLGGLI 412
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
+ +TD V + L++LT+LNL+ N +TD + +SGLT L L++ ++ I
Sbjct: 413 LNSNQITD--VSPLSGLTNLTVLNLNSN-QITD--VSPLSGLTNLRRLHLKDNPI 462
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 136/405 (33%), Positives = 211/405 (52%), Gaps = 54/405 (13%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ +GL NL L+L + + ++ L L SL + N +D+ PLSGLTNL
Sbjct: 91 VSPLSGLTNLTVLNLW-----NNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTNLT 145
Query: 184 SLQISCSKVTD----SGIAYLKGL--------SISSVIFILCSMIIRLFCLHVF----LT 227
L ++ +++TD SG+ L GL +S + + ++ L + L+
Sbjct: 146 VLNLNNNQITDISPLSGLTSLTGLILGGNQIKDVSPLSGLTNLTVLNLNNNQITDISPLS 205
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L LT+L L +T + SLS L SL L L+ Q++D S + +L L L
Sbjct: 206 GLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPLSGLTNLDALYLNN 261
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N+ITD + L GLTNL++L L++ I D + L+GL NL L L++ Q+ + + LS
Sbjct: 262 NQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQI--TDISPLS 315
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
GLTNL+++ L+ I+D SL L+GL++L +L L++ QITD ++ L LT L +L L
Sbjct: 316 GLTNLDALYLNSNQITDISL--LSGLTNLDALYLNSNQITD--ISPLLELTNLNYLILDN 371
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNLTDK 462
+ITD + L NL L + +TD I LS LT +LN +Q +TD
Sbjct: 372 NQITD--ISPLSGLTNLTILILDNNQITD-----ISPLSGLTNLGGLILNSNQ---ITD- 420
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+ +SGLT L LN+++++IT + L L NLR L L+ +
Sbjct: 421 -VSPLSGLTNLTVLNLNSNQITD--VSPLSGLTNLRRLHLKDNPI 462
>gi|158336627|ref|YP_001517801.1| internalin A protein [Acaryochloris marina MBIC11017]
gi|158306868|gb|ABW28485.1| internalin A protein [Acaryochloris marina MBIC11017]
Length = 627
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 157/549 (28%), Positives = 251/549 (45%), Gaps = 84/549 (15%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT + +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTAASYL 114
Query: 76 H--------------------LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L D NL LD + QI+D L ++ L LTSL
Sbjct: 115 QPTTNLTTVYLKTTNISDYSFLSDLKNLTHLDLSNN-QIAD--LSFIQDLKQLTSLGLAS 171
Query: 116 NNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLE 158
N + G+K ++ L+NL +L L R L L+ L L
Sbjct: 172 NKIVDISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREATDLAFLQDLKDLT 231
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
L++ + + I SD+ L L L L + +++ S IA L L + + + + I
Sbjct: 232 HLDLSYNHWI--SDISVLRNLPKLTHLDLGSNQI--SNIAVLLDLQQLTHLSLSSNQISD 287
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
+ L +LQ L L++ + + L L L +L+++ ++SD +
Sbjct: 288 VSVLQ----TLQGLERLDVSANEIADIAI--LQNLQGLTHLDISSNEVSD--ISVLQDLT 339
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L LN+ NEI D + L+GLT L SL++ + + + +L GL +L L LS Q+
Sbjct: 340 TLTQLNVSSNEIIDYSV--LQGLTQLTSLDVSDNQMSE--ISDLQGLHSLTSLNLSYNQL 395
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
S + L L L ++NLS+ +SD ++ L L +LNL QITD L+ L L
Sbjct: 396 --SDISVLQDLKQLATLNLSYNPVSDIAV--LQNFKDLTTLNLSFTQITD--LSHLQDLK 449
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNC 457
GL LDL +ITD A L++ + L L + L+D A ++ +K L S LNLS N
Sbjct: 450 GLISLDLHSNQITDISA--LQDLEGLYRLNVSDNQLSDIAALRKLKGLFS---LNLSINQ 504
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L L+ LT L SLNVS+++++ + L+ L L SL L + ++ DI LQ
Sbjct: 505 ILDIAALQ---DLTRLTSLNVSHNQLSDISV--LQGLTRLNSLDLGANQIA--DISVLQ- 556
Query: 518 RDLPNLVSF 526
++P L S
Sbjct: 557 -NIPGLFSL 564
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 33/239 (13%)
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
FN+ D+ HL+ N +LN + +G ++L G+ + ++ S Q HL
Sbjct: 26 FNQSLDDTYHHLQLQPNAYALNDEHQIVG----LSLQGVDGHELVDASIEQYP-----HL 76
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
S L I + A L L ++ L + +T + L T LT + L
Sbjct: 77 SALY--------LFDIVSPEIVPFASLPGLSTIALSGQDVT--AASYLQPTTNLTTVYLK 126
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
I+D ++L + KNL L++ + D + I+DL LT L L+ N K ++
Sbjct: 127 TTNISD--YSFLSDLKNLTHLDLSNNQIAD--LSFIQDLKQLTSLGLASN-----KIVD- 176
Query: 467 ISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 523
ISGL L LN N R + L LK LR LT+ + T D+ LQ +DL +L
Sbjct: 177 ISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREAT--DLAFLQDLKDLTHL 233
>gi|46447568|ref|YP_008933.1| hypothetical protein pc1934 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401209|emb|CAF24658.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 261
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 142/244 (58%), Gaps = 12/244 (4%)
Query: 232 LTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNE 289
L LNL GC +T A L L+ L +L +LNL+RC +L+D G + + +L+ L L + E
Sbjct: 3 LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62
Query: 290 -ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 346
+TD L HL LT L+ L L +C + D GLV+LT L +L+ L+LS+ + GL HL
Sbjct: 63 NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHL 122
Query: 347 SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHL 403
+ LT L+ + LS ++D L L L++L++L L + +T GLA L LT L L
Sbjct: 123 TPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTL 182
Query: 404 DL-FGARITDSGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
DL + + D+G A+L L++L + C LTDAG+ H+K L++L L+LS +LT
Sbjct: 183 DLSYCKNLKDAGLAHLTPLTALQTLGLKWCSK-LTDAGLAHLKPLAALQHLDLSHCRSLT 241
Query: 461 DKTL 464
D L
Sbjct: 242 DAGL 245
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%)
Query: 279 SLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD- 335
+LK LNL G +++T+ L HL L L+ LNL C + D GL +LT L L+ L LS
Sbjct: 2 ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61
Query: 336 ---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGL 391
T G + L L+ L +L N ++D L L L+SL+ L+L + +TD GL
Sbjct: 62 ENLTDAGLAHLALLTALQDLALANCKH--LTDVGLVHLTPLTSLQHLDLSNCMNLTDDGL 119
Query: 392 AALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSL 448
LT LT L HL L G +TD+G A+L L++L + LT G+ H+ L++L
Sbjct: 120 VHLTPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTAL 179
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
L+LS NL D L ++ LT L +L + S++T AGL HLKPL L+ L L C+
Sbjct: 180 QTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSHCR 238
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 135/269 (50%), Gaps = 30/269 (11%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++LSG S +T++GL HL LQ L+ + C +++D GL HL L+ L L
Sbjct: 2 ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G+ A L L L L C + GLV+L L L+ L++ C +TD +
Sbjct: 62 ENLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVH 121
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ LT L+ L +S C +TD+G+A+L L+ L ++ +R +C Q L
Sbjct: 122 LTPLTALQHLVLSGCDNLTDAGLAHLTPLT------ALQTLGLRRWC--------QNL-- 165
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITD 292
T L L+ L +L L+L+ C+ L D G + + +L+ L L + +++TD
Sbjct: 166 --------TGDGLAHLAPLTALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTD 217
Query: 293 ECLVHLKGLTNLESLNLDSC-GIGDEGLV 320
L HLK L L+ L+L C + D GL
Sbjct: 218 AGLAHLKPLAALQHLDLSHCRSLTDAGLA 246
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 8/219 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL HL + LQ L ++C ++D GL HL L+ L L+ +T G+
Sbjct: 37 SRLTDAGLAHLTPLTALQHLGLSYCENLTDAGLAHLALLTALQDLALANCKHLTDVGLVH 96
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L +L LDL C + GLV+L L L+ L + C+ +TD+ + L+ LT L++L
Sbjct: 97 LTPLTSLQHLDLSNCMNLTDDGLVHLTPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTL 156
Query: 186 QIS--CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-P 241
+ C +T G+A+L L ++ ++ C + H LT L L L L+ C
Sbjct: 157 GLRRWCQNLTGDGLAHLAPLTALQTLDLSYCKNLKDAGLAH--LTPLTALQTLGLKWCSK 214
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGS 279
+T A L L L +L +L+L+ C+ L+D G +F + +
Sbjct: 215 LTDAGLAHLKPLAALQHLDLSHCRSLTDAGLARFKILAT 253
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 399 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 456
L +L+L G +++T++G A+L K L+ L + LTDAG+ H+ L++L L LS
Sbjct: 2 ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 511
NLTD L ++ LT L L ++N + +T GL HL PL +L+ L L +C +D
Sbjct: 62 ENLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDD 117
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS ++ D+GL HL + LQ+L +C +++D GL HL+ L+ L L
Sbjct: 177 TALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSH 236
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
++T G+ F L + L++ R
Sbjct: 237 CRSLTDAGLARFKILATSLNLEIVR 261
>gi|51850103|dbj|BAD42392.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 621
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 170/376 (45%), Gaps = 7/376 (1%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ +A+ S+ S+DLS + + G L D L SL+ + +I D G L
Sbjct: 224 GIGDRAAQALAAS-RSIRSLDLSVNMIGCDGAQALADAP-LVSLNL-YSNEIGDDGARAL 280
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
LTSL RRN I G AFA L KL+L G L G L L++
Sbjct: 281 ATSQTLTSLELRRN-GIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDL 339
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
N + D + L+G +L SL++ ++++D G+ L + + + + +
Sbjct: 340 G-GNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAG 398
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
+ + +L+ LNL C + + +L+ SL L LN ++ DDG +K +L +
Sbjct: 399 ALGGNT--RLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTL 456
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+L N I + L G L SL L GI D+G L L L+LS ++GS G
Sbjct: 457 LDLSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEG 516
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
RHL+ L ++LS I + L+ + L +L + I + G AL T LT
Sbjct: 517 ARHLAQSATLAELDLSENRIGPEGAKALSLSTVLTTLKVIDNAIGEDGARALADSTSLTS 576
Query: 403 LDLFGARITDSGAAYL 418
LD I ++GA L
Sbjct: 577 LDARRNGIGEAGAQVL 592
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 185/443 (41%), Gaps = 42/443 (9%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---- 167
S R A+T + +KA L L++ RCT G ++ +GL L ++ +K N
Sbjct: 146 SVRFKGALTLEALKALP--PTLEHLEIGRCT---GSAISAEGLAHLAAMPLKSLNLNGIE 200
Query: 168 ------------------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
I D + L+ +++SL +S + + G L
Sbjct: 201 IGVEGARTLATSKSLVSLSLIGCGIGDRAAQALAASRSIRSLDLSVNMIGCDGAQALADA 260
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
+ V L S I TS Q LT L L + A + + L LNL
Sbjct: 261 PL--VSLNLYSNEIGDDGARALATS-QTLTSLELRRNGIGNAGAGAFANNTVLRKLNLAN 317
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
+ G + SL L+LG N + D+ L G +L SL +D I DEG+ L
Sbjct: 318 NMIDKRGARVLAGNTSLTELDLGGNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALA 377
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L+ L+LS VG G L G T L +NLS GI+ S LA SL SL L+
Sbjct: 378 QHATLRSLDLSFNFVGLQGAGALGGNTRLSELNLSLCGINSYSASALARNKSLASLYLNG 437
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+I D G AL + LT LDL I ++GA L + L SL++ G G+ D G +
Sbjct: 438 NRIGDDGARALAKNSTLTLLDLSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALA 497
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
LT L+LSQN ++ L T L L++S +RI G + L S L
Sbjct: 498 RHPRLTTLDLSQNRIGSEGARHLAQSAT-LAELDLSENRIGPEGAKALS-----LSTVLT 551
Query: 504 SCKVTANDIKRLQSRDLPNLVSF 526
+ KV N I +R L + S
Sbjct: 552 TLKVIDNAIGEDGARALADSTSL 574
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 177/424 (41%), Gaps = 47/424 (11%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+GS ++ GL HL L+SL+ N I+I G L +L SLS I +
Sbjct: 174 TGSAISAEGLAHLAAMP-LKSLNLN-GIEIGVEGARTLATSKSLVSLSLI-GCGIGDRAA 230
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCNCITDSDMKPL 176
+A A ++ LDL VN+ G L SLN+ + N I D + L
Sbjct: 231 QALAASRSIRSLDLS---------VNMIGCDGAQALADAPLVSLNL-YSNEIGDDGARAL 280
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ L SL++ + + ++G ++ + + +MI + L LT L+
Sbjct: 281 ATSQTLTSLELRRNGIGNAGAGAFANNTVLRKLNLANNMIDKRGAR--VLAGNTSLTELD 338
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L G + +L+ SL L ++ ++SD+G + ++ +L+ L+L FN + +
Sbjct: 339 LGGNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAG 398
Query: 297 HLKGLTNLESLNLDSCGI------------------------GDEGLVNLTGLCNLKCLE 332
L G T L LNL CGI GD+G L L L+
Sbjct: 399 ALGGNTRLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLD 458
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
LS + ++G L G L S+ L+ GI D LA L +L+L +I G
Sbjct: 459 LSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGAR 518
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L L LDL RI GA L L +L++ + + G + + D +SLT L+
Sbjct: 519 HLAQSATLAELDLSENRIGPEGAKALSLSTVLTTLKVIDNAIGEDGARALADSTSLTSLD 578
Query: 453 LSQN 456
+N
Sbjct: 579 ARRN 582
>gi|222617264|gb|EEE53396.1| hypothetical protein OsJ_36445 [Oryza sativa Japonica Group]
Length = 625
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 137/512 (26%), Positives = 234/512 (45%), Gaps = 75/512 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + +D + + L +VDLS D L + L+ L C
Sbjct: 73 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 132
Query: 92 IQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLV 149
+ ++D GL + G L LS + I+ G+ + + L LD+ + L
Sbjct: 133 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIA-------YL 200
++ L KLE L + C+CI D ++ L G +L+S+ +S C VT G+A +L
Sbjct: 193 SISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFL 252
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQK----LTLLNLEGCPVTAACLDSLSALGSL 256
+ L+ + + + FL++L K LT+L L+G V+++ L ++ +L
Sbjct: 253 QKLNAADSLHEM---------RQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNNL 303
Query: 257 FYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLVHLKGLTNLE 305
+ L++C ++D+G ++ L+V++L + I + C + +E
Sbjct: 304 VEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKM-------VE 356
Query: 306 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L+SC I ++GL + C NL+ I+L+ G++D
Sbjct: 357 HLRLESCSSISEKGLEQIATSC-----------------------PNLKEIDLTDCGVND 393
Query: 365 GSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN- 420
+L+ LA S L L L I+D GLA ++S G L LDL+ ITD G A L N
Sbjct: 394 AALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANG 453
Query: 421 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNV 478
K ++ L +C +TD+G+ H+ L LT L L +T + ++ G L+ +++
Sbjct: 454 CKKIKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDL 513
Query: 479 SNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 508
+ AGL L NLR LT+ C+VT
Sbjct: 514 KRCYSVDDAGLWALARYALNLRQLTISYCQVT 545
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 111/422 (26%), Positives = 189/422 (44%), Gaps = 37/422 (8%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L ++D +D+++ + L S+D+S V + L + L+ L C
Sbjct: 150 LEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLRSISSLEKLEELAMVCCS 209
Query: 93 QISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH------ 145
I D GLE L +G ++L S+ R + +T+QG+ + N ++ L +H
Sbjct: 210 CIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQ-KLNAADSLHEMRQSF 268
Query: 146 -GGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
L LK +++L+ L ++ S + + G NL + +S C+ VTD GI+ L
Sbjct: 269 LSNLAKLKDTLTVLRLDGLE------VSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSL 322
Query: 201 -KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLF 257
S VI + C ++ L + + + L LE C ++ L+ ++ + +L
Sbjct: 323 VTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLESCSSISEKGLEQIATSCPNLK 382
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSC-GI 314
++L C ++D + +K L VL LG + I+D+ L + L L+L C I
Sbjct: 383 EIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSI 442
Query: 315 GDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLESINL----SFTGISDGSLR 368
D+GL L C +K L L ++ SGL HL L L ++ L TGI S+
Sbjct: 443 TDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVA 502
Query: 369 KLAGLSSLKSLNLD-ARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLRS 426
G +L ++L + D GL AL L L + ++T G +L +LR
Sbjct: 503 --IGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLRC 558
Query: 427 LE 428
L+
Sbjct: 559 LQ 560
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 194/462 (41%), Gaps = 90/462 (19%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C L+++D + C+ D L + L LS + +T G+
Sbjct: 96 CPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKCLGVTDMGLAKV------------ 143
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIA 198
+ G +LE L++KWC I+D + LS + L+SL IS KV +
Sbjct: 144 -----------VVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNE--- 189
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
S+ S+ +SL+KL L + V +C+D
Sbjct: 190 -----SLRSI------------------SSLEKLEELAM----VCCSCID---------- 212
Query: 259 LNLNRCQLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNL-DSCG- 313
DDG E K SL+ +++ + +T + L L G L+ LN DS
Sbjct: 213 ---------DDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQKLNAADSLHE 263
Query: 314 IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA 371
+ L NL L + L L L +V SS L + G NL I LS G++D + L
Sbjct: 264 MRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLV 323
Query: 372 -GLSSLKSLNLDA-RQITDTGLAALTSLTGLT-HLDLFG-ARITDSGAAYLR-NFKNLRS 426
S L+ ++L +T+ L ++ + HL L + I++ G + + NL+
Sbjct: 324 TQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLESCSSISEKGLEQIATSCPNLKE 383
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSN-SRIT 484
+++ G+ DA ++H+ S L +L L +++DK L IS G L+ L++ + IT
Sbjct: 384 IDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSIT 443
Query: 485 SAGLRHLK-PLKNLRSLTLESC-KVTANDIKRLQS-RDLPNL 523
GL L K ++ L L C K+T + + L S +L NL
Sbjct: 444 DDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNL 485
>gi|348514973|ref|XP_003445014.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
gi|410918767|ref|XP_003972856.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 400
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 161/288 (55%), Gaps = 23/288 (7%)
Query: 250 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 305
+ + SL LNL+ C Q++D + ++ + +L+VL LG + IT+ L+ + GL L+
Sbjct: 113 VQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLK 172
Query: 306 SLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLES 354
SLNL SC + D G+ +L G+ NL+ L L D Q + L+H+S GLT L
Sbjct: 173 SLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRV 232
Query: 355 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARI 410
+NLSF G ISD + L+ ++SL SLNL + I+DTG L T L+ LD+ F +I
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKI 292
Query: 411 TDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+
Sbjct: 293 GDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIA 352
Query: 469 -GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
LT LV +++ ++IT GL + L L+ L L ++T ++ R
Sbjct: 353 DHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 175/345 (50%), Gaps = 42/345 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ L I+ + L S+ +
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGL-----LLIAWGLHRLKSLNL 176
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 274
R C HV + + +L G +AA CL+ L YL L CQ L+D +
Sbjct: 177 R-SCRHV-----SDVGIGHLAGMTRSAAEGCLN-------LEYLTLQDCQKLTDLSLKHI 223
Query: 275 SK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKC 330
SK + L+VLNL F I+D ++HL +T+L SLNL SC I D G ++L G L
Sbjct: 224 SKGLTKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSG 283
Query: 331 LELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQI 386
L++S ++G L +++ GL L+S++L ISD + R + + L++LN+ +I
Sbjct: 284 LDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRI 343
Query: 387 TDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
TD GL + LT L +DL+G +IT G + L+ L +
Sbjct: 344 TDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNL 388
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 138/283 (48%), Gaps = 51/283 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-------GLSIS----- 206
LN+ +C I+D+ M LS +T+L SL + SC ++D+G +L GL +S
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKI 292
Query: 207 ---SVIFI-----------LCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS 251
++ +I LCS I ++ + + +L LN+ C +T L+ ++
Sbjct: 293 GDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIA 352
Query: 252 -ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L L ++L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 353 DHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 399 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L +L L ++TD ++ + LR +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D T+ L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 511 DIKRL 515
I R+
Sbjct: 321 GINRM 325
>gi|406833162|ref|ZP_11092756.1| hypothetical protein SpalD1_16026 [Schlesneria paludicola DSM
18645]
Length = 447
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 173/354 (48%), Gaps = 37/354 (10%)
Query: 179 LTNLKSLQI-SCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L++LK LQI +C + D +A L GL ++S L + +I + + S +LT L+
Sbjct: 106 LSDLKKLQIFNCRTLNDEMVAQLSGLKGLTS--LALTNSVINDSGVETIVKSFPELTELD 163
Query: 237 LEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
L +T + +S LG L L L + Q++D G ++ SK+ L+ L+L
Sbjct: 164 LSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDL---------- 213
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
+G N+E+ GD L + GL +L+ + T V SGL +LS LES+
Sbjct: 214 ---RG--NMEA--------GDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESL 260
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDS 413
L I+D S LA LS L L + Q G+ AL + GL L L + D
Sbjct: 261 LLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGM-GLIRLTLRDLPNVDDR 319
Query: 414 GAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
+ LR L E+ G DAG+KH+ L SL LL++ +TD+T+++IS L
Sbjct: 320 AMEVFDDLPQLRRLYLHELTSVG--DAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQL 377
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 523
L L++ + +T + + L +K+L+SLT E+ +TA +K+L +R L
Sbjct: 378 PNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSARKWSKL 431
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 154/362 (42%), Gaps = 59/362 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS++ L+ S+L+ L C ++D + L GL LTSL+ N+ I G++
Sbjct: 92 GSNLQSEDLVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALT-NSVINDSGVE 150
Query: 126 AFA-GLINLVKLDLERCTRIHGGLVN-------------------------LKGLMKLES 159
L +LDL T + G+V L L +L S
Sbjct: 151 TIVKSFPELTELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRS 210
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIR 218
L+++ D ++ ++GL +L+S + + V DSG+ YL +G ++ S++
Sbjct: 211 LDLRGNMEAGDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLL--------- 261
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKI 277
LQ + + G L+ L L L + RCQ DG +
Sbjct: 262 ----------LQDFVITDQSGP--------HLAKLSKLSQLEIFRCQGFGSDGVLALKGM 303
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLEL-SD 335
G +++ + D + L L L L +GD GL +L GL +L+ L++ +
Sbjct: 304 GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHELTSVGDAGLKHLAGLKSLELLDIWTV 363
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 394
Q+ + +S L NL+ +++ TG++D ++ KL + SL+SL IT GL L
Sbjct: 364 PQMTDETVDVISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKKL 423
Query: 395 TS 396
++
Sbjct: 424 SA 425
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
VND ++ + SQG +L S+ L +TD HL S L L+ C G+ L
Sbjct: 242 AVNDSGLEYL-SQGQALESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLAL 300
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
+G+ L L+ R + + M+ F L L +L L T + GL +L GL LE L+
Sbjct: 301 KGM-GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHELTSVGDAGLKHLAGLKSLELLD 359
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
I +TD + +S L NLK L I + VTDS I L
Sbjct: 360 IWTVPQMTDETVDVISQLPNLKDLSIRVTGVTDSAIDKL 398
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 131/288 (45%), Gaps = 13/288 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEH 101
+ND ++ I L +DLS + +G++ + SNL L + QI+D G +
Sbjct: 144 INDSGVETIVKSFPELTELDLSSNTNMTNGVVKI--ISNLGKLQRLTLVQNQINDIGAQR 201
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESL 160
L L L SL R N ++ AGL +L R T ++ GL L LESL
Sbjct: 202 LSKLQELRSLDLRGNMEAGDMTLEVVAGLPHLQSFK-HRSTAVNDSGLEYLSQGQALESL 260
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLS-ISSVIFILCSMIIR 218
++ ITD L+ L+ L L+I C G+ LKG+ I + L ++ R
Sbjct: 261 LLQDF-VITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDR 319
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKI 277
+ L L++L L L V A L L+ L SL L++ Q++D+ + S++
Sbjct: 320 AMEVFDDLPQLRRLYLHEL--TSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQL 377
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG 324
+LK L++ +TD + L + +L+SL G I EGL L+
Sbjct: 378 PNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA 425
>gi|290973418|ref|XP_002669445.1| predicted protein [Naegleria gruberi]
gi|284082993|gb|EFC36701.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 140/279 (50%), Gaps = 1/279 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LTLL++ + +S + L LN+ ++ D+G S++ L L++G N
Sbjct: 1 MKQLTLLDIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+I+DE + + L L++ GIGD+G +++ + L L + Q+G G + +S
Sbjct: 61 QISDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQ 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ L +++ I + ++ + L SLN+ + +I G+ L+ + LT L++
Sbjct: 121 MKQLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGEN 180
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
I D GA + K L L+I + G K I ++ LT LN+ +N + D+ +LIS
Sbjct: 181 LIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNIGEN-GIGDEGAKLIS 239
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+ L L++ + I G +++ +K L SL + + ++
Sbjct: 240 EMKQLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQI 278
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 125/261 (47%), Gaps = 27/261 (10%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ ++ +++LT L++ G ++ S+S + L +L++ + D G + S++ L +L
Sbjct: 44 IMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLL 103
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
N+G N+ IGDEG ++ + L L++ ++ G
Sbjct: 104 NIGGNQ------------------------IGDEGAKLISQMKQLTFLDIYCNEIDVEGA 139
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ +S + L S+N+ I ++ L+ + L SLN+ I D G ++ + LT L
Sbjct: 140 KCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFL 199
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDK 462
D++ I GA + + L SL I G+ D G K I ++ LT L++ CN + +
Sbjct: 200 DIYCNEIGVEGAKSISEMQQLTSLNIGENGIGDEGAKLISEMKQLTFLDIY--CNEIGVE 257
Query: 463 TLELISGLTGLVSLNVSNSRI 483
+ IS + L SLN+SN++I
Sbjct: 258 GAKYISEMKQLTSLNISNNQI 278
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 125/277 (45%), Gaps = 12/277 (4%)
Query: 46 DKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
D + I +G+ L+S +++ +++ D G I + + L LD QISD G
Sbjct: 8 DIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGN-QISDEG 66
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ + LT L N I +G K+ + + L L++ G + + +L
Sbjct: 67 ARSISKMRQLTFLDIY-GNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMKQLT 125
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
L+I +CN I K +S + L SL I +++ G+ +L + + + I ++I
Sbjct: 126 FLDI-YCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENLIGD 184
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
++ +++LT L++ + S+S + L LN+ + D+G + S++
Sbjct: 185 EGA--KLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNIGENGIGDEGAKLISEMK 242
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
L L++ NEI E ++ + L SLN+ + IG
Sbjct: 243 QLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQIG 279
>gi|290993104|ref|XP_002679173.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284092789|gb|EFC46429.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 370
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 146/302 (48%), Gaps = 3/302 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
FL S+Q + + + L+SL + +L L L +L + + S++ SL L+
Sbjct: 65 FLDSIQSVKVKSGNNSGSIGYLLNSLCLMRNLQELYLVSKELDSNDAQVISEMKSLTKLD 124
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L N I+DE + + ++ L L +DS + DEG ++ G+ L+ L++S+ G
Sbjct: 125 LNGNRISDEGVDFISKMSGLTYLRIDSNAVHDEGAKSIQGMKGLRTLKVSNNSFFEVGFE 184
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + NL +++S + + + + +L SL +D I G+ L + LT L
Sbjct: 185 AISQMGNLTKLDMSENSLGIEGTKSIGIMKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLS 244
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ +I + GA Y+ K L L+I + + G K I L+ LT+L++ +N N+ +
Sbjct: 245 IVENQIDEEGAKYIGELKQLTILDISFNYVGEKGAKSISTLNKLTMLDIIEN-NIGENGA 303
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
+S L L L+++++ I G + L L L+ L + + ND++ R + NL
Sbjct: 304 ISLSNLNQLTKLDINSNNIGHLGAKSLVKLNQLKELNISYNNI--NDLEINIIRQMKNLK 361
Query: 525 SF 526
S
Sbjct: 362 SL 363
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKV 282
++ ++ LT L+L G ++ +D +S + L YL ++ + D+G + + +LKV
Sbjct: 114 ISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRIDSNAVHDEGAKSIQGMKGLRTLKV 173
Query: 283 LNLGFNEITDECLVHLKGLT---------------------NLESLNLDSCGIGDEGLVN 321
N F E+ E + + LT NL SL +D IG EG+
Sbjct: 174 SNNSFFEVGFEAISQMGNLTKLDMSENSLGIEGTKSIGIMKNLTSLKIDYNHIGSEGVKY 233
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L + L L + + Q+ G +++ L L +++SF + + + ++ L+ L L++
Sbjct: 234 LNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFNYVGEKGAKSISTLNKLTMLDI 293
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
I + G +L++L LT LD+ I GA L L+ L I + D +
Sbjct: 294 IENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVKLNQLKELNISYNNINDLEINI 353
Query: 442 IKDLSSL-TLLNLSQN 456
I+ + +L +L N SQN
Sbjct: 354 IRQMKNLKSLTNHSQN 369
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
+ S+ SL +DL+G+ ++D G+ + S L L + + D G + ++G+ L +L
Sbjct: 113 VISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRID-SNAVHDEGAKSIQGMKGLRTL 171
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMK-LESLNIKWCNCIT 169
NN+ G +A + + NL KLD+ E I G G+MK L SL I + N I
Sbjct: 172 KVS-NNSFFEVGFEAISQMGNLTKLDMSENSLGIEG--TKSIGIMKNLTSLKIDY-NHIG 227
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
+K L+ + L L I +++ + G Y+ L
Sbjct: 228 SEGVKYLNEMKQLTKLSIVENQIDEEGAKYI--------------------------GEL 261
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
++LT+L++ V S+S L L L++ + ++G S + L L++ N
Sbjct: 262 KQLTILDISFNYVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSNN 321
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
I L L L+ LN+ I D + + + NLK L
Sbjct: 322 IGHLGAKSLVKLNQLKELNISYNNINDLEINIIRQMKNLKSL 363
>gi|361069065|gb|AEW08844.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137600|gb|AFG49921.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137602|gb|AFG49922.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137604|gb|AFG49923.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137606|gb|AFG49924.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137608|gb|AFG49925.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137610|gb|AFG49926.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137612|gb|AFG49927.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137614|gb|AFG49928.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137616|gb|AFG49929.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137618|gb|AFG49930.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137620|gb|AFG49931.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137622|gb|AFG49932.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137624|gb|AFG49933.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137626|gb|AFG49934.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137628|gb|AFG49935.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137630|gb|AFG49936.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137632|gb|AFG49937.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137634|gb|AFG49938.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
Length = 73
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
QN +LTD LE +SG+T LVSLNVSN+R+T+ GL+HL+PLKNL SL+L++CKVT +IK+
Sbjct: 1 QNSHLTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKK 60
Query: 515 LQSRDLPNLVSFR 527
LQ+ LPNL R
Sbjct: 61 LQA-TLPNLAGVR 72
>gi|290978242|ref|XP_002671845.1| predicted protein [Naegleria gruberi]
gi|284085417|gb|EFC39101.1| predicted protein [Naegleria gruberi]
Length = 439
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 164/375 (43%), Gaps = 14/375 (3%)
Query: 100 EHLRG--LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ L+G L +++ + ++N + F L NL ++D+ + + L L
Sbjct: 67 QKLKGKFLERVSNFTVKKNEEGNLFNCQIFECLKNLTRIDISDNEISDERVKHFGNLTHL 126
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
+L I CN I K L L L L I + + G Y+ L L + I
Sbjct: 127 TNLVIN-CNDIGVEGAKCLCQLNQLTRLNIGNNSLETEGAKYISELKN------LTKLDI 179
Query: 218 RLFCL----HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
C+ F+T +++LT LNL + +S + L L+++ + +G ++
Sbjct: 180 ARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLGAKFISEMYQLTSLDISNNDIGSEGAKQ 239
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
SK+ L L + N I DE +H+ + L +L++ I EG ++ L L L +
Sbjct: 240 ISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDISRNDIDSEGAKSICELYQLTNLNI 299
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
+G +G +H+S + NL + + I ++ + L L + A I + G
Sbjct: 300 CSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYHISRMHQLTRLMIFANDIGEKGAKH 359
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
++ + LT LD++ I D G ++ K L L++ + G ++I+ L+ LT LN+
Sbjct: 360 VSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDVSANNIGHEGAEYIRKLNRLTFLNV 419
Query: 454 SQNCNLTDKTLELIS 468
N + +D ELI
Sbjct: 420 HYN-SFSDSESELIE 433
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 1/237 (0%)
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
C+ F + +L +++ NEI+DE + H LT+L +L ++ IG EG L L L
Sbjct: 93 CQIFECLKNLTRIDISDNEISDERVKHFGNLTHLTNLVINCNDIGVEGAKCLCQLNQLTR 152
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L + + + + G +++S L NL ++++ I D + + + L SLNL+ I G
Sbjct: 153 LNIGNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLG 212
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
++ + LT LD+ I GA + L L I + D G HI ++ LT
Sbjct: 213 AKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTN 272
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L++S+N ++ + + I L L +LN+ ++ I G +H+ + NL L + S ++
Sbjct: 273 LDISRN-DIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEI 328
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 134/336 (39%), Gaps = 55/336 (16%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSF 113
Q + L +++ + + G ++ + NL LD CI D G + + + LTSL+
Sbjct: 146 QLNQLTRLNIGNNSLETEGAKYISELKNLTKLDIARNCI--GDRGAQFITEMKQLTSLNL 203
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R N I G K + + L LD+ N I
Sbjct: 204 NR-NGIEYLGAKFISEMYQLTSLDISN-------------------------NDIGSEGA 237
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S L L L I + + D G +H+ + +++LT
Sbjct: 238 KQISKLDQLTKLYIYDNNIGDEG------------------------AMHI--SEMKQLT 271
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L++ + + S+ L L LN+ + + G + S++ +L +L +G NEI E
Sbjct: 272 NLDISRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEIGSE 331
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
H+ + L L + + IG++G +++ + L L++ D +G G H+S + L
Sbjct: 332 GAYHISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLT 391
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
+++S I + L+ L LN+ +D+
Sbjct: 392 YLDVSANNIGHEGAEYIRKLNRLTFLNVHYNSFSDS 427
>gi|344169683|emb|CCA82044.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[blood disease bacterium R229]
Length = 590
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 124/452 (27%), Positives = 195/452 (43%), Gaps = 34/452 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ T L SL S + + +G+ L + + + + C+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCT--------------------- 273
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
P+ +L+ +L LN+ +L D G + +L LN+ NEI E
Sbjct: 274 -----PIDEESAQALARNTTLTSLNVRLSRLGDAGARALAATTTLTSLNVSLNEIGPEGA 328
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L T+L SL++ +G +G L L L + ++ +G + L+ T L S+
Sbjct: 329 KALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHRNRIEVAGAQALANNTRLTSL 388
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
++S G+ R +L SL + I D G L T LT LD+ RI ++GA
Sbjct: 389 DISDNGLGVWGARAFVDNETLTSLRIATNMIGDEGAKWLARNTTLTSLDIGENRIGETGA 448
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
L L SL I G + GV + ++L LN+S+N +L T L S
Sbjct: 449 QALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAALNVSRNQIGVAGAQDLARNTT-LRS 507
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L V+ + I + G R L K L SL++ C++
Sbjct: 508 LVVNYNEIGNEGARALAGNKTLVSLSVVDCRI 539
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 166/380 (43%), Gaps = 45/380 (11%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN- 116
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASANG 250
Query: 117 ----------------------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 153
I + +A A L L++ R +R+ G L
Sbjct: 251 IGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNV-RLSRLGDAGARALAA 309
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L SLN+ N I K L+ T+L SL I +KV G+ + L+ S L
Sbjct: 310 TTTLTSLNVS-LNEIGPEGAKALANNTSLTSLDIGGNKV---GVDGAQALATS---MTLT 362
Query: 214 SMIIRLFCLHVF----LTSLQKLTLLNLE----GCPVTAACLDSLSALGSLFYLNLNRCQ 265
S++I + V L + +LT L++ G A +D+ +L L +
Sbjct: 363 SLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDN----ETLTSLRIATNM 418
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ D+G + ++ +L L++G N I + L G T L SLN+ IG G++ L
Sbjct: 419 IGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARN 478
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L +S Q+G +G + L+ T L S+ +++ I + R LAG +L SL++ +
Sbjct: 479 TTLAALNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLVSLSVVDCR 538
Query: 386 ITDTGLAALTSLTGLTHLDL 405
I D G AL + T L LD+
Sbjct: 539 IGDEGAHALAANTTLALLDV 558
>gi|291000432|ref|XP_002682783.1| predicted protein [Naegleria gruberi]
gi|284096411|gb|EFC50039.1| predicted protein [Naegleria gruberi]
Length = 303
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 99/182 (54%)
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ LK L + N I DE + + L SL++ IGDEG +++ + L L++S
Sbjct: 115 SEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSLDIS 174
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
Q+G G + + + L S+++ F I + + ++G++ L SL++ +I D G ++
Sbjct: 175 GNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSI 234
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+ + LT L+++ RI D GA + + K L+SL I G + D K I ++ LT L++S
Sbjct: 235 SGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDIS 294
Query: 455 QN 456
N
Sbjct: 295 NN 296
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 14/226 (6%)
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL------SALGSLFYLNLNRCQLSDDG 270
I+LF F+ S+ E + LDS+ S + L L ++ + D+G
Sbjct: 83 IKLFMTSQFMNSI--------ENVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEG 134
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ S++ L L++ +N+I DE + + L SL++ IGDEG ++ + L
Sbjct: 135 AKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQLTS 194
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L++ Q+G G + +SG+ L S+++S I D + ++G++ L SLN+ +I D G
Sbjct: 195 LDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEG 254
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
++ + L L++ G RI D A + K L SL+I + D
Sbjct: 255 AKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDISNNRIGD 300
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ +S + L+S+ + GI D + ++ + L SL++ QI D G +++ + LT L
Sbjct: 112 KFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSL 171
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
D+ G +I D GA + K L SL+I + + G K I ++ LT L++S N + D+
Sbjct: 172 DISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGN-RIGDEG 230
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQS 517
+ ISG+ L SLNV N+RI G + + +K L+SL + ++ + +++K+L S
Sbjct: 231 AKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTS 290
Query: 518 RDLPN 522
D+ N
Sbjct: 291 LDISN 295
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 98/191 (51%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++L L ++ + +S + L L++ Q+ D+G + S++ L L+
Sbjct: 113 FISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSLD 172
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N+I DE + + L SL++ IG+EG ++G+ L L++S ++G G +
Sbjct: 173 ISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAK 232
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+SG+ L S+N+ I D + + + LKSLN+ +I D +++ + LT LD
Sbjct: 233 SISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLD 292
Query: 405 LFGARITDSGA 415
+ RI D A
Sbjct: 293 ISNNRIGDEEA 303
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y + D+ I S+ + L S+D+SG+ + D G + + L SLD F QI + G +
Sbjct: 151 YNQIGDEGAKSI-SEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFN-QIGEEGAK 208
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ G++ LTSL N I +G K+ +G+ L L++ G ++ + +L+SL
Sbjct: 209 FISGMNQLTSLDI-SGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSL 267
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
NI N I D + K +S + L SL IS +++ D
Sbjct: 268 NI-GGNRIGDEEAKSISEMKQLTSLDISNNRIGD 300
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 52/224 (23%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G + + + LTSLS N I +G K+ + + L LD+ G ++
Sbjct: 130 IGDEGAKFISEMKQLTSLSVYYN-QIGDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIE 188
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SL+I + N I + K +SG+ L SL IS +++ D G + G++
Sbjct: 189 VKQLTSLDI-YFNQIGEEGAKFISGMNQLTSLDISGNRIGDEGAKSISGMN--------- 238
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+LT LN+ Y N ++ D+G +
Sbjct: 239 -----------------QLTSLNV--------------------YNN----RIGDEGAKS 257
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
+ LK LN+G N I DE + + L SL++ + IGDE
Sbjct: 258 IIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTSLDISNNRIGDE 301
>gi|218960535|ref|YP_001740310.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans]
gi|167729192|emb|CAO80103.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 3445
Score = 92.0 bits (227), Expect = 6e-16, Method: Composition-based stats.
Identities = 97/279 (34%), Positives = 149/279 (53%), Gaps = 41/279 (14%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------------- 194
L L+SL++ N I SD+ PL+GLTNL+ L + ++++D
Sbjct: 2943 LTNLQSLDLD-SNQI--SDLSPLAGLTNLQELYLYYNQISDLSPLAELTNLQYLDLGGNQ 2999
Query: 195 -SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
S ++ L GL+ +++ + I L L LT+LQ+L L + + + L L+ L
Sbjct: 3000 ISDLSPLAGLNNLQELYLYWNQIGDLSPL-AGLTNLQELDLYSNQ-----ISDLSPLAEL 3053
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+L+YL+L+ Q+SD + + +L+ L LG+N+I L L GLTNL+ LNL S
Sbjct: 3054 TNLWYLDLSYNQISD--LSPLAGLTNLQDLYLGWNQIN--YLSPLAGLTNLQVLNLYSNQ 3109
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
I D L L L NL+ L L Q+ S L L+GLTNL + L++ ISD L L GL
Sbjct: 3110 ISD--LSPLAELTNLQYLHLYYNQI--SDLSPLTGLTNLHYLYLAYNQISD--LSPLIGL 3163
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
++L+ L+L QI+D ++ L LT L +L L +I+D
Sbjct: 3164 TNLQYLHLYYNQISD--ISPLAELTNLQYLWLDSNQISD 3200
Score = 83.6 bits (205), Expect = 2e-13, Method: Composition-based stats.
Identities = 115/323 (35%), Positives = 161/323 (49%), Gaps = 56/323 (17%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NLQSLD + QISD L L GL+NL L N + AGL NL LDL
Sbjct: 2313 TNLQSLDLD-SNQISD--LSPLAGLTNLLELYLLDN---MINYLSPLAGLTNLQYLDL-- 2364
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
GG N I SD+ PL+GLTNL+ L + +++ + ++ L
Sbjct: 2365 -----GG------------------NQI--SDLSPLAGLTNLQDLYLGWNQI--NYLSPL 2397
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
GL+ + + + I + L LT+LQKL L + + L LS L +L YL
Sbjct: 2398 AGLTNLQELDLNNNQISNINPL-AGLTNLQKLYLYYNQ-----ISDLSPLSGLTNLQYLL 2451
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
L Q+S+ + + +L+VL+L N+I+D L L LTNL L+L I D L
Sbjct: 2452 LEYNQISN--ISPLAGLTNLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQISD--LS 2505
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L GL NL+ L L + Q+ L L GLTNL+ ++L + ISD L L GL++L L
Sbjct: 2506 PLVGLVNLQGLWLDNNQIND--LSPLIGLTNLQYLHLYYNQISD--LSPLTGLTNLHYLY 2561
Query: 381 LDARQITDTGLAALTSLTGLTHL 403
L QI+D L+S+ GLT+L
Sbjct: 2562 LAYNQISD-----LSSVEGLTNL 2579
Score = 83.2 bits (204), Expect = 3e-13, Method: Composition-based stats.
Identities = 86/260 (33%), Positives = 137/260 (52%), Gaps = 31/260 (11%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L+ L+LG N+I+D L L GLTNL+ L L I L L GL NL+ L+L++ Q+
Sbjct: 2358 NLQYLDLGGNQISD--LSPLAGLTNLQDLYLGWNQI--NYLSPLAGLTNLQELDLNNNQI 2413
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
S + L+GLTNL+ + L + ISD L L+GL++L+ L L+ QI++ ++ L LT
Sbjct: 2414 --SNINPLAGLTNLQKLYLYYNQISD--LSPLSGLTNLQYLLLEYNQISN--ISPLAGLT 2467
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD----AGV----------KHIKD 444
L LDL+ +I+D + L NL L++ ++D G+ I D
Sbjct: 2468 NLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQISDLSPLVGLVNLQGLWLDNNQIND 2525
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLT 501
LS L L Q +L + +S LTGL +L+ ++ ++I+ L ++ L NL+ L
Sbjct: 2526 LSPLIGLTNLQYLHLYYNQISDLSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQELY 2583
Query: 502 LESCKVTANDIKRLQSRDLP 521
L+ ++ + QS LP
Sbjct: 2584 LDYNPISYESMLLAQSWSLP 2603
Score = 81.6 bits (200), Expect = 9e-13, Method: Composition-based stats.
Identities = 103/291 (35%), Positives = 142/291 (48%), Gaps = 49/291 (16%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +NLQ LD QISD L L GL+NL L N + AGL NL +L
Sbjct: 2353 LAGLTNLQYLDLG-GNQISD--LSPLAGLTNLQDLYLGWNQI---NYLSPLAGLTNLQEL 2406
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
DL +I + L GL L+ L + + N I SD+ PLSGLTNL+ L + +++ S
Sbjct: 2407 DLNN-NQI-SNINPLAGLTNLQKLYLYY-NQI--SDLSPLSGLTNLQYLLLEYNQI--SN 2459
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
I+ L GL T+LQ L L + + + L L+ L +L
Sbjct: 2460 ISPLAGL-----------------------TNLQVLDLYSNQ-----ISDLSPLAELTNL 2491
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
+YL+L+ Q+SD + +L+ L L N+I D L L GLTNL+ L+L I D
Sbjct: 2492 WYLDLSYNQISD--LSPLVGLVNLQGLWLDNNQIND--LSPLIGLTNLQYLHLYYNQISD 2547
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
L LTGL NL L L+ Q+ S L + GLTNL+ + L + IS S+
Sbjct: 2548 --LSPLTGLTNLHYLYLAYNQI--SDLSSVEGLTNLQELYLDYNPISYESM 2594
Score = 80.9 bits (198), Expect = 1e-12, Method: Composition-based stats.
Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 45/256 (17%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
+++++G L +L + + SD+ PL+GL NL+ L + ++++D I+ L GL+
Sbjct: 1089 IISIEGAQYLTNLQVMYLYSNQISDLSPLAGLANLQELLLYANQISD--ISPLAGLNNLQ 1146
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
+ + + I + L L+ L +L L L Q+S
Sbjct: 1147 YLLLQYNQI----------------------------SDLSPLAGLTNLQNLILAYNQIS 1178
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D + + +L+VL+L N+I+ L L GLTNL+ L L S I D L L G+ N
Sbjct: 1179 D--ISPLAGLTNLQVLDLYSNQIS--YLSPLAGLTNLQELYLHSNQISD--LSPLAGMTN 1232
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L+ + L + Q+ S L L+GLTNL+ + L + I+D + LAGL++L SLNL QI+
Sbjct: 1233 LRVINLKNNQI--SDLSPLAGLTNLQYLLLGWNKIND--ISPLAGLTNLWSLNLSYNQIS 1288
Query: 388 DTGLAALTSLTGLTHL 403
D L+ L GLT+L
Sbjct: 1289 D-----LSPLAGLTNL 1299
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 79/211 (37%), Positives = 111/211 (52%), Gaps = 22/211 (10%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L+ L+L N+I+D L L GLTNL+ L L I D L L L NL+ L+L Q+
Sbjct: 2945 NLQSLDLDSNQISD--LSPLAGLTNLQELYLYYNQISD--LSPLAELTNLQYLDLGGNQI 3000
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
S L L+GL NL+ + L + I D L LAGL++L+ L+L + QI+D L+ L LT
Sbjct: 3001 --SDLSPLAGLNNLQELYLYWNQIGD--LSPLAGLTNLQELDLYSNQISD--LSPLAELT 3054
Query: 399 GLTHLDLFGARITD-SGAAYLRNFKNL----RSLEICG--GGLTDAGV-----KHIKDLS 446
L +LDL +I+D S A L N ++L + GLT+ V I DLS
Sbjct: 3055 NLWYLDLSYNQISDLSPLAGLTNLQDLYLGWNQINYLSPLAGLTNLQVLNLYSNQISDLS 3114
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L L Q +L + +S LTGL +L+
Sbjct: 3115 PLAELTNLQYLHLYYNQISDLSPLTGLTNLH 3145
Score = 70.1 bits (170), Expect = 3e-09, Method: Composition-based stats.
Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 20/251 (7%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L+V+ L N+I+D L L GL NL+ L L + I D + L GL NL+ L L Q+
Sbjct: 1100 NLQVMYLYSNQISD--LSPLAGLANLQELLLYANQISD--ISPLAGLNNLQYLLLQYNQI 1155
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
S L L+GLTNL+++ L++ ISD + LAGL++L+ L+L + QI+ L+ L LT
Sbjct: 1156 --SDLSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS--YLSPLAGLT 1209
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L L L +I+D + L NLR + + ++D + + L++L L L N
Sbjct: 1210 NLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQISD--LSPLAGLTNLQYLLLGWN-K 1264
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
+ D + ++GLT L SLN+S ++I+ L L L NL L L++ ++ + QS
Sbjct: 1265 IND--ISPLAGLTNLWSLNLSYNQISD--LSPLAGLTNLWYLYLDNNPISYESMLLSQSW 1320
Query: 519 DLP-NLVSFRP 528
LP + S+ P
Sbjct: 1321 ALPWSTSSYNP 1331
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 69/265 (26%), Positives = 120/265 (45%), Gaps = 64/265 (24%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
+++++G +L+ + + S++ PL+GLTNLK L + ++++D I L GL+ S
Sbjct: 1694 IISIEGAQYFTNLDSLYLSYNQISNLNPLAGLTNLKGLNLGSNQISD--INPLAGLTNIS 1751
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
+F+ + I +++ L L+
Sbjct: 1752 WLFLFGNYI-------------------------------SNIAPLEGLY---------- 1770
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
+L+ L L +N+I+D + L L ++ + L S I D + L GL +
Sbjct: 1771 -----------NLRNLQLHYNQISD--ITPLAALIDIGGIALGSNQIVD--ITPLAGLTH 1815
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L LEL Q+ + + LSGL NL+ + L I D + LAGLS L+ L L+ QI
Sbjct: 1816 LIGLELYHNQI--NNIDALSGLINLQWLYLDGNQIID--ISPLAGLSILRELYLENNQIN 1871
Query: 388 DTGLAALTSLTGLTHLDLFGARITD 412
D ++ L+ L L +L L+ +I+D
Sbjct: 1872 D--ISTLSELNNLQYLFLYNNQISD 1894
Score = 58.5 bits (140), Expect = 8e-06, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 29/192 (15%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
TNL+S+ LS+ IS+ L LAGL++LK LNL + QI+D + L LT ++ L LFG
Sbjct: 1703 FTNLDSLYLSYNQISN--LNPLAGLTNLKGLNLGSNQISD--INPLAGLTNISWLFLFGN 1758
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDA--------------GVKHIKDLSSLTLLNLS 454
I S A L NLR+L++ ++D G I D++ L L
Sbjct: 1759 YI--SNIAPLEGLYNLRNLQLHYNQISDITPLAALIDIGGIALGSNQIVDITPLAGLTHL 1816
Query: 455 QNCNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
L + I L+GL++L + ++I + L L LR L LE+ ++ ND
Sbjct: 1817 IGLELYHNQINNIDALSGLINLQWLYLDGNQIID--ISPLAGLSILRELYLENNQI--ND 1872
Query: 512 IKRLQSRDLPNL 523
I L +L NL
Sbjct: 1873 ISTLS--ELNNL 1882
Score = 47.8 bits (112), Expect = 0.015, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 26/179 (14%)
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
SD Q + L+ L+G NL G + S+ L++L+SL+LD+ QI+D L+
Sbjct: 2911 SDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISD--LSP 2961
Query: 394 LTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L LT L L L+ +I+D S A L N + L D G I DLS L LN
Sbjct: 2962 LAGLTNLQELYLYYNQISDLSPLAELTNLQYL-----------DLGGNQISDLSPLAGLN 3010
Query: 453 LSQNCNL---TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
Q L L ++GLT L L++ +++I+ L L L NL L L +++
Sbjct: 3011 NLQELYLYWNQIGDLSPLAGLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQIS 3067
Score = 45.4 bits (106), Expect = 0.072, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 32/219 (14%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQDL LG + +N ++ +A ++L +DL+ + + S + L +NLQ L + +
Sbjct: 2381 LQDLYLG-WNQIN--YLSPLAGL-TNLQELDLNNNQI--SNINPLAGLTNLQKL-YLYYN 2433
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-----------ERC 141
QISD L L GL+NL L N + AGL NL LDL
Sbjct: 2434 QISD--LSPLSGLTNLQYLLLEYNQI---SNISPLAGLTNLQVLDLYSNQISDLSPLAEL 2488
Query: 142 TRI------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
T + + + +L L+ L +L W + +D+ PL GLTNL+ L + ++++D
Sbjct: 2489 TNLWYLDLSYNQISDLSPLVGLVNLQGLWLDNNQINDLSPLIGLTNLQYLHLYYNQISD- 2547
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
++ L GL+ +++ + I L + LT+LQ+L L
Sbjct: 2548 -LSPLTGLTNLHYLYLAYNQISDLSSVE-GLTNLQELYL 2584
Score = 42.7 bits (99), Expect = 0.45, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQDL LG + +N ++ +A ++L ++L + ++D L L + +NLQ L +
Sbjct: 3078 LQDLYLG-WNQIN--YLSPLAGL-TNLQVLNLYSNQISD--LSPLAELTNLQYLHLYYN- 3130
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD L L GL+NL L N + GL NL L L + + ++
Sbjct: 3131 QISD--LSPLTGLTNLHYLYLAYNQI---SDLSPLIGLTNLQYLHL-----YYNQISDIS 3180
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
L +L +L W + SD+ PL+GLTNL
Sbjct: 3181 PLAELTNLQYLWLDSNQISDLSPLAGLTNL 3210
Score = 42.7 bits (99), Expect = 0.48, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 42/198 (21%)
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--- 390
SD Q + L+ L+G NL G + S+ L++L+SL+LD+ QI+D
Sbjct: 2280 SDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISDLSPLA 2332
Query: 391 -----------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L+ L LT L +LDL G +I+D + L NL+ L +
Sbjct: 2333 GLTNLLELYLLDNMINYLSPLAGLTNLQYLDLGGNQISD--LSPLAGLTNLQDLYL---- 2386
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVSNSRITSAGLRH 490
G I LS L L Q +L + + I +GLT L L + ++I+ L
Sbjct: 2387 ----GWNQINYLSPLAGLTNLQELDLNNNQISNINPLAGLTNLQKLYLYYNQISD--LSP 2440
Query: 491 LKPLKNLRSLTLESCKVT 508
L L NL+ L LE +++
Sbjct: 2441 LSGLTNLQYLLLEYNQIS 2458
>gi|290972233|ref|XP_002668860.1| predicted protein [Naegleria gruberi]
gi|284082393|gb|EFC36116.1| predicted protein [Naegleria gruberi]
Length = 296
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 152/295 (51%), Gaps = 4/295 (1%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT LN+ + +S L ++ L+++ ++ G + ++ L L +
Sbjct: 1 MKQLTNLNVRHNDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYCC 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I E ++ L L L+++ IGDEG + + L L + D ++GS G++++
Sbjct: 61 SIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIGQ 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L NL + +S I D + ++ ++ L L++ + IT G+ ++ + L L +
Sbjct: 121 LKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDN 180
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
I GA ++ K L SLE+ + G K++ ++ LT L +S+N + DK ++ +S
Sbjct: 181 NIDSMGAKHISQMK-LTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKN-EIGDKGVQFLS 238
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
G+ L SL+++ ++I+ G +++ +KNL L++ +++ + I+RL R++ L
Sbjct: 239 GMKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERL--REMKQL 291
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 136/323 (42%), Gaps = 58/323 (17%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++D+SG+ + G ++ + L L +C I G +++ L+ LT LS NN I
Sbjct: 30 TLDISGNSINKRGAKYIGEMKQLTDLGM-YCCSIGVEGTKYISSLNQLTHLSININN-IG 87
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G K + L DL C N I +K + L
Sbjct: 88 DEGAKYIGQIKQLT--DLSICD-----------------------NKIGSEGVKYIGQLK 122
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NL L +SC+++ D+G F++ + +LT L++
Sbjct: 123 NLLKLYVSCNEIGDNGAQ--------------------------FISEMNQLTKLDISSV 156
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS--KIGSLKVLNLGFNEITDECLVHL 298
+T + +S + L L ++ + G + S K+ SL+V N N I E +L
Sbjct: 157 NITPIGIKYISKMEHLIDLMISDNNIDSMGAKHISQMKLTSLEVYN---NTIDVEGAKYL 213
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
+ L +L + IGD+G+ L+G+ L L++++ ++ G +++ + NL +++
Sbjct: 214 SEMEQLTNLEISKNEIGDKGVQFLSGMKQLTSLDINENKISDVGAKYILEMKNLIDLSVF 273
Query: 359 FTGISDGSLRKLAGLSSLKSLNL 381
IS+ + +L + L L++
Sbjct: 274 DNEISEDIIERLREMKQLTYLDI 296
>gi|320165720|gb|EFW42619.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 664
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 124/468 (26%), Positives = 195/468 (41%), Gaps = 59/468 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVN 150
QI+ ++ GL+ L L + NN IT+ AF+GL +N ++L+ + I
Sbjct: 190 QIATVAIDAFSGLTALVQL-YLYNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSA-- 246
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS------ 204
GL L L + + N IT +GLT L+ L + +++ I GL+
Sbjct: 247 FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLR 305
Query: 205 -----ISSVIFILCSMIIRLFCLHVF-----------LTSLQKLTLLNLEGCPVTAACLD 248
I++V S + +L LH++ T L LT L L+ +T +
Sbjct: 306 LDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPAN 365
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLE 305
+ S L +L YL L Q++ FS + +L L L N+IT L L LT L
Sbjct: 366 AFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLY 425
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGI 362
N + G LT L +L+ + T + ++ +GLT L ++LS T I
Sbjct: 426 LYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAF---TGLTKLTYLDLSLNQLTSI 482
Query: 363 SDGSLRKLAGLSSLKSLN--LDA-------------------RQITDTGLAALTSLTGLT 401
G+ L L+ L N L A QIT A T LT L
Sbjct: 483 PAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALV 542
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L L+G +IT A+ +L L + +T V L+ L+LL LS N +T
Sbjct: 543 QLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSNN-QITS 601
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
SGLT + L++ N+ +++ L L++L L + ++T+
Sbjct: 602 LPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITS 649
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 164/375 (43%), Gaps = 16/375 (4%)
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSD 172
N IT AF+GL L LDL + T + GL KL +L + W + I S
Sbjct: 93 NPITNIASSAFSGLSVLNTLDLTNNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSA 150
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQ 230
+GLT L L + +++T + GL+ ++++ + I + + F LT+L
Sbjct: 151 F---TGLTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATV-AIDAFSGLTALV 206
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+L L N + ++A LS L +L LN LS F+ + +L L L N+I
Sbjct: 207 QLYLYNNQITSISANAFSGLSKLNTL---QLNNNWLSAIPSSAFTGLTALTQLLLYNNQI 263
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
T GLT L+ L L + I + +GL L L L Q+ + SGL+
Sbjct: 264 TTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLS 323
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L +++L +S GL++L L LD QIT A + LT L +L L+ +I
Sbjct: 324 KLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQI 383
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
T A L L + +T + LS+LT L L N +T SGL
Sbjct: 384 TTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLYLYNN-QITSVPANGFSGL 442
Query: 471 TGLVSLNVSNSRITS 485
T L L + N+ ITS
Sbjct: 443 TALTDLRLFNNTITS 457
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 122/488 (25%), Positives = 194/488 (39%), Gaps = 63/488 (12%)
Query: 15 VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
+Y+ +T +S AF + L L L N+ W+ I S +G
Sbjct: 210 LYNNQITSISANAFSGLSKLNTLQL------NNNWLSAIPSSA-------FTGLTALTQL 256
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L++ + + S F GL L+ L + NN I + AF+GL L
Sbjct: 257 LLYNNQITTVPSSAFT--------GLTALQFL-------YLYNNQIATVAINAFSGLTAL 301
Query: 134 V--KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISC 189
V +LD + T + GL KL +L++ W + I S +GLT L L++
Sbjct: 302 VQLRLDTNQITTVPANA--FSGLSKLNTLHLYNNWLSAIPSSAF---TGLTALTQLRLDT 356
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLTLLNLEGCPVTAACL 247
+++T GL+ +++ + I + + F LT+L +L L N + + ++ L
Sbjct: 357 NQITTVPANAFSGLTALIYLYLYNNQITTVPA-NAFSGLTALVQLYLYNNQITTIPSSAL 415
Query: 248 DSLSALGSLFYLNLNRCQLSDDG---------------------CEKFSKIGSLKVLNLG 286
LSAL L+ N + +G F+ + L L+L
Sbjct: 416 TGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLS 475
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
N++T GLT L L L + + TGL L L L + Q+ +
Sbjct: 476 LNQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAF 535
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+GLT L + L I+ S AG+SSL L L + +IT + A T LT L+ L+L
Sbjct: 536 TGLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELS 595
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
+IT A + L + L+ L++L L L N +T
Sbjct: 596 NNQITSLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQAL-LLYNNQITSVAANA 654
Query: 467 ISGLTGLV 474
+GLT LV
Sbjct: 655 FTGLTALV 662
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 118/280 (42%), Gaps = 4/280 (1%)
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
P+T + S L L L+L Q++ FS + L L L N ++ G
Sbjct: 94 PITNIASSAFSGLSVLNTLDLTNNQITTVPANAFSGLSKLNTLYLYNNWLSAIPSSAFTG 153
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT L L L + I TGL L+ L L + Q+ + + SGLT L + L
Sbjct: 154 LTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNN 213
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I+ S +GLS L +L L+ ++ +A T LT LT L L+ +IT ++
Sbjct: 214 QITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTG 273
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
L+ L + + + L++L L L N +T SGL+ L +L++ N
Sbjct: 274 LTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTN-QITTVPANAFSGLSKLNTLHLYN 332
Query: 481 ---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
S I S+ L L LR T + V AN L +
Sbjct: 333 NWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTA 372
>gi|299066813|emb|CBJ38007.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CMR15]
Length = 457
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 110/421 (26%), Positives = 182/421 (43%), Gaps = 55/421 (13%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L+ LD + C I+ G+ HL L L L+ R N I A+G + A L L++
Sbjct: 63 ASLKELDLSQCRGPITAAGMAHLSRLP-LVRLNVR-NKRIGAKGARLLANHPTLTSLNVS 120
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L G M+L +LN+ N + + K L+ L+SL +S +++ D
Sbjct: 121 NNRIGPEGAQALAGNMRLTTLNVS-GNRLGVEEAKALAANQTLRSLDVSDNRIGD----- 174
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
EG V AAC L L
Sbjct: 175 --------------------------------------EGARVLAACTQ-------LTTL 189
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
+ NR + DG + +L+ L +G N I D ++ L L +LN++S G+G G+
Sbjct: 190 DANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARLTTLNVESTGVGAVGV 249
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
L L L L +G++G L+ T L +++L+ I + LA + L +L
Sbjct: 250 GALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGAEGAQALAANTKLTTL 309
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
+L +I DTG+ AL + L L + + D A L + L +L++ G G+ D G
Sbjct: 310 DLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTLTTLDLSGNGIEDQGA 369
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
K + +LT L++S N ++ + ++ LV L++ ++R+ AG R L + L S
Sbjct: 370 KALAANPTLTTLDVSSN-DIKNAGARALAANARLVWLDLRHNRMEEAGTRALLANRTLSS 428
Query: 500 L 500
L
Sbjct: 429 L 429
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 8/292 (2%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L SL++L L G P+TAA + LS L L LN+ ++ G + +L
Sbjct: 58 LRGLPASLKELDLSQCRG-PITAAGMAHLSRL-PLVRLNVRNKRIGAKGARLLANHPTLT 115
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
LN+ N I E L G L +LN+ +G E L L+ L++SD ++G
Sbjct: 116 SLNVSNNRIGPEGAQALAGNMRLTTLNVSGNRLGVEEAKALAANQTLRSLDVSDNRIGDE 175
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
G R L+ T L +++ + GI LA +L+SL + I D G+ AL + LT
Sbjct: 176 GARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARLT 235
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L++ + G L K L L + G G+ +AG + + LT L+L++N +
Sbjct: 236 TLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARN-KIGA 294
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
+ + ++ T L +L++ ++I G+R L L SLT V ND+K
Sbjct: 295 EGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLT-----VRRNDLK 341
>gi|209154948|gb|ACI33706.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 400
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 160/288 (55%), Gaps = 23/288 (7%)
Query: 250 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 305
+ + SL LNL+ C Q++D + ++ + +L+VL LG + IT+ L+ + GL L+
Sbjct: 113 VQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLK 172
Query: 306 SLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLES 354
SLNL SC + D G+ +L G+ NL+ L L D Q + L+H+S GL L
Sbjct: 173 SLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRV 232
Query: 355 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARI 410
+NLSF G ISD + L+ ++SL SLNL + I+DTG+ L T L+ LD+ F +I
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKI 292
Query: 411 TDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+
Sbjct: 293 GDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIA 352
Query: 469 -GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
LT L +++ ++IT GL + L L+ L L ++T ++ R
Sbjct: 353 DHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 177/345 (51%), Gaps = 42/345 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ L I+ + L S+ +
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGL-----LLIAWGLHRLKSLNL 176
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 274
R C HV + + +L G +AA CL+ L YL L CQ L+D +
Sbjct: 177 R-SCRHV-----SDVGIGHLAGMTRSAAEGCLN-------LEYLTLQDCQKLTDLSLKHI 223
Query: 275 SK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKC 330
SK + L+VLNL F I+D ++HL +T+L SLNL SC I D G+++L G L
Sbjct: 224 SKGLAKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSG 283
Query: 331 LELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQI 386
L++S ++G L +++ GL L+S++L ISD + R + + L++LN+ +I
Sbjct: 284 LDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRI 343
Query: 387 TDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
TD GL + LT LT +DL+G +IT G + L+ L +
Sbjct: 344 TDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 388
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 139/283 (49%), Gaps = 51/283 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-------GLSIS----- 206
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L GL +S
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKI 292
Query: 207 ---SVIFI-----------LCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS 251
S+ +I LCS I ++ + + +L LN+ C +T L+ ++
Sbjct: 293 GDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIA 352
Query: 252 -ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L L ++L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 353 DHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 399 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L +L L ++TD ++ + LR +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L++S +I L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 511 DIKRL 515
I R+
Sbjct: 321 GINRM 325
>gi|432942786|ref|XP_004083072.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 400
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 171/360 (47%), Gaps = 66/360 (18%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+ G+ N++SL +S C +TD+G+ H F+ + L +
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLG------------------------HAFVQEIPSLRV 121
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LNL C S+LG + N L GC + G L V
Sbjct: 122 LNLSLCKQITD-----SSLGRIAQYLKNLEMLELGGCSNITNTGLLLVA----------- 165
Query: 295 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLR 344
GL L+SLNL SC + D G+ +L G+ NL+ L L D Q + L+
Sbjct: 166 ----WGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLK 221
Query: 345 HLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTG 399
H+S GLT L +NLSF G ISD + L+ + SL SLNL + I+DTG A+ SL
Sbjct: 222 HISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLR- 280
Query: 400 LTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQN 456
L+ LD+ F +I D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q
Sbjct: 281 LSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQC 340
Query: 457 CNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+TDK LELI+ LT LV +++ ++IT GL + L L+ L L ++T ++ R
Sbjct: 341 VRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 172/338 (50%), Gaps = 52/338 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINL 133
++ N++SL+ + C ++D GL H ++ + +L L+ IT + A L NL
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T NL+
Sbjct: 146 EMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
L + C K+TD + ++ KGL+ KL +LNL C
Sbjct: 206 YLTLQDCQKLTDLSLKHISKGLT--------------------------KLRVLNLSFCG 239
Query: 241 PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLV 296
++ A + LS +GSL+ LNL C +SD G + +GSL++ L++ F ++I D+ L
Sbjct: 240 GISDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLA-MGSLRLSGLDVSFCDKIGDQTLA 298
Query: 297 HL-KGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNL 352
++ +GL L+SL+L SC I D+G+ + + L+ L + ++ GL ++ LT L
Sbjct: 299 YIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQL 358
Query: 353 ESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
I+L T I+ L ++ L LK LNL Q+T++
Sbjct: 359 VGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 396
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 156/306 (50%), Gaps = 30/306 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L+ L +S C ++TDS + YLK L
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 145
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALG-- 254
+ + CS I L V L +L LNL C + A + +A G
Sbjct: 146 EMLELGG--CSNITNTGLLLVAW-GLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCL 202
Query: 255 SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 311
+L YL L CQ L+D + SK + L+VLNL F I+D ++HL + +L SLNL S
Sbjct: 203 NLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRS 262
Query: 312 C-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL 367
C I D G ++L G L L++S ++G L +++ GL L+S++L ISD +
Sbjct: 263 CDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGI 322
Query: 368 -RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN 423
R + + L++LN+ +ITD GL + LT L +DL+G +IT G +
Sbjct: 323 NRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPC 382
Query: 424 LRSLEI 429
L+ L +
Sbjct: 383 LKVLNL 388
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 399 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L +L L ++TD ++ + LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 202 LNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGG-ISDAGMIHLSHMGSLWSLNL 260
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D T+ L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 511 DIKRL 515
I R+
Sbjct: 321 GINRM 325
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 40/239 (16%)
Query: 69 VTDSGLIHL--------KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
V+D G+ HL + C NL+ L C +++D L+H+ +GL+ L L+ I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLS 177
+ GM + + +L L+L C I G ++L G ++L L++ +C+ I D + ++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 178 -GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
GL LKSL + ++D GI + + + +L LN
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRM-------------------------VRQMHELRTLN 336
Query: 237 LEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+ C +T L+ ++ L L ++L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 337 IGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
>gi|290976637|ref|XP_002671046.1| predicted protein [Naegleria gruberi]
gi|284084611|gb|EFC38302.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 2/288 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+ +L L+L +++ S+ L +L L++ + E SK+ L +LN+
Sbjct: 1 MDQLKKLDLISNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKC 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+IT+ + + G+ L SL + GI D G+ +L L L L++ ++ + G + +S
Sbjct: 61 KITNLGIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQ 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFG 407
+ NL +++ GI + ++ + L L +L+ A QI G+ ++TSL L L++
Sbjct: 121 MKNLTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGD 180
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
I D+GA + K L++L + + G K I ++++LT L++S N NL D+ +LI
Sbjct: 181 NWIGDAGAKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISAN-NLGDEGAKLI 239
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
SGL L+ L +S I + G + L+ L L + + K L
Sbjct: 240 SGLNQLIKLWISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSL 287
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 158/327 (48%), Gaps = 5/327 (1%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I+++ ++ LINL +L + + + L L KL LNI C IT+ ++ +
Sbjct: 12 NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCK-ITNLGIESM 70
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
G+ L SL+IS + + DSG+ L LS + + I + I C ++ ++ LT L+
Sbjct: 71 IGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGC--KCISQMKNLTDLS 128
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+ + + + L L L+ + Q+ S DG + + + L LN+G N I D
Sbjct: 129 VGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGA 188
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
+ + L++L + S IG +G +++ + NL L++S +G G + +SGL L +
Sbjct: 189 KVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKL 248
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
+S I + ++ L L L++ I G +L+ L LT LD+ I DSG
Sbjct: 249 WISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGV 308
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHI 442
YL K L+ L + G+ D G K++
Sbjct: 309 KYLSKMKKLKHLNVYDNGI-DNGNKYL 334
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 144/317 (45%), Gaps = 27/317 (8%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
N I+ + + L NL L I + + + YL L +++ I I L +
Sbjct: 11 SNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCKITNLGIESM 70
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++LT L + + + + SL L L L+++ ++ +GC+ S++ +L L+
Sbjct: 71 I--GMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLS 128
Query: 285 LGFNEITDECLV---HLKGLTNLE----------------------SLNLDSCGIGDEGL 319
+G N I +E + LK LTNL SLN+ IGD G
Sbjct: 129 VGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGA 188
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
++ + LK L + T +G G + +S +TNL +++S + D + ++GL+ L L
Sbjct: 189 KVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKL 248
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
+ I + G +++ L LT LD+ I GA L K+L L+I + D+GV
Sbjct: 249 WISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGV 308
Query: 440 KHIKDLSSLTLLNLSQN 456
K++ + L LN+ N
Sbjct: 309 KYLSKMKKLKHLNVYDN 325
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 160/330 (48%), Gaps = 14/330 (4%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
IS + + L NLT LS N+ I + ++ + L L L++ +C + G+ ++ G
Sbjct: 14 ISSEATQSIGNLINLTELSIGYND-IGYKAVEYLSKLEKLTILNISKCKITNLGIESMIG 72
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG---IAYLKGLSISSV-I 209
+ +L SL I N I DS +K L L+ L L I +++ G I+ +K L+ SV +
Sbjct: 73 MKQLTSLEISE-NGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLSVGL 131
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSD 268
+ I+ C L++LT L+ + + + S+++L L LN+ + D
Sbjct: 132 NGIDEEGIKFIC------ELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGD 185
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
G + S++ LK L + I + + +TNL L++ + +GDEG ++GL L
Sbjct: 186 AGAKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQL 245
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L +S+ +G+ G +S L L +++ I + L+ L L L++ I D
Sbjct: 246 IKLWISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIED 305
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYL 418
+G+ L+ + L HL+++ I D+G YL
Sbjct: 306 SGVKYLSKMKKLKHLNVYDNGI-DNGNKYL 334
>gi|254417119|ref|ZP_05030865.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176097|gb|EDX71115.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 414
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 181/342 (52%), Gaps = 59/342 (17%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+D++PLSGLTNL++L + + ++D +S + V LT+L+
Sbjct: 86 TDIRPLSGLTNLRTLYLGSNLISD----------VSPL---------------VELTNLK 120
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
K+ L + + V + LS L +L +L+L+R Q+++ S++ +L+ L+LG N+I
Sbjct: 121 KVDLSHNQITNV-----NPLSGLTNLEWLDLSRNQITN--VNPLSELTNLEWLDLGHNQI 173
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
T+ + L GLTNLE LNL I + ++ + L NLK + L++ Q+ + + L+ LT
Sbjct: 174 TN--ISPLSGLTNLEFLNLSHNQITNFRII--SALINLKDIALNNNQI--TDIYPLAELT 227
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
NL I+L+ I+ ++R L L++L+SL + QITD + L+ LT L L L +I
Sbjct: 228 NLRRISLNNNQIT--TVRPLVQLTNLESLYIGNNQITD--IRPLSQLTNLRQLALNHNQI 283
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
TD L NL L + +TD V+ + L++L ++L+ N I+ +
Sbjct: 284 TDIRP--LSQLTNLTGLALSHNQITD--VRPLSQLTNLEWIHLNYNQ---------ITNI 330
Query: 471 TGLVSL-NVSNSRITSAGLRHLKP---LKNLRSLTLESCKVT 508
T LV+L N++ + S + ++ P LKNL+ + L ++T
Sbjct: 331 TPLVNLNNLTGLDLHSNQVTNVTPLVQLKNLKWIDLRFNQIT 372
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 152/295 (51%), Gaps = 37/295 (12%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVF- 225
SD+ PL LTNLK + +S +++T+ SG+ L+ L +S + + L L
Sbjct: 108 SDVSPLVELTNLKKVDLSHNQITNVNPLSGLTNLEWLDLSRNQITNVNPLSELTNLEWLD 167
Query: 226 -----------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
L+ L L LNL +T + +SAL +L + LN Q++D
Sbjct: 168 LGHNQITNISPLSGLTNLEFLNLSHNQITNFRI--ISALINLKDIALNNNQITD--IYPL 223
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+++ +L+ ++L N+IT + L LTNLESL + + I D + L+ L NL+ L L+
Sbjct: 224 AELTNLRRISLNNNQIT--TVRPLVQLTNLESLYIGNNQITD--IRPLSQLTNLRQLALN 279
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
Q+ + +R LS LTNL + LS I+D +R L+ L++L+ ++L+ QIT+ + L
Sbjct: 280 HNQI--TDIRPLSQLTNLTGLALSHNQITD--VRPLSQLTNLEWIHLNYNQITN--ITPL 333
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
+L LT LDL ++T+ L KNL+ +++ +TD I LS LT
Sbjct: 334 VNLNNLTGLDLHSNQVTN--VTPLVQLKNLKWIDLRFNQITD-----ISSLSGLT 381
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 140/286 (48%), Gaps = 59/286 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +T+ L + +NL+ LD QI++ + L GL+NL L+ N
Sbjct: 139 TNLEWLDLSRNQITNVN--PLSELTNLEWLDLGHN-QITN--ISPLSGLTNLEFLNLSHN 193
Query: 117 NAITAQGMKAFAGLINL--VKLDLERCTRIH--GGLVNLK----------------GLMK 156
IT + + LINL + L+ + T I+ L NL+ L
Sbjct: 194 -QIT--NFRIISALINLKDIALNNNQITDIYPLAELTNLRRISLNNNQITTVRPLVQLTN 250
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSISSVIFIL 212
LESL I N ITD ++PLS LTNL+ L ++ +++TD S + L GL++S
Sbjct: 251 LESLYIG-NNQITD--IRPLSQLTNLRQLALNHNQITDIRPLSQLTNLTGLALS------ 301
Query: 213 CSMIIRLFCLHVFLTSLQKLT-LLNLEGCPVTAACLDSLSA---LGSLFYLNLNRCQLSD 268
H +T ++ L+ L NLE + + +++ L +L L+L+ Q+++
Sbjct: 302 ----------HNQITDVRPLSQLTNLEWIHLNYNQITNITPLVNLNNLTGLDLHSNQVTN 351
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
++ +LK ++L FN+ITD + L GLTNL L L+ I
Sbjct: 352 --VTPLVQLKNLKWIDLRFNQITD--ISSLSGLTNLMRLYLEGNPI 393
>gi|434405929|ref|YP_007148814.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260184|gb|AFZ26134.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 384
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 191/374 (51%), Gaps = 38/374 (10%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
++ + + Q + L+ + + + C + + L LK L KL S I SD+
Sbjct: 38 QQKSTLPPQTRRTVDALLKVA--ETQNCNQANQKLTQLKEL-KLGSNKI--------SDI 86
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
KPLS L NL L + +++ D I L L+ + I I + II + L++L KL
Sbjct: 87 KPLSNLNNLIYLDLGFNQIID--IKPLSNLTNLTGINIYYNQIIDIKP----LSNLTKLI 140
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LNL + + LS L +L YL L+R Q++D + S + +L L+L N+I+D
Sbjct: 141 YLNLIKNEFSD--IKPLSNLTNLIYLGLSRNQIND--IKPLSNLTNLTTLDLIENKISD- 195
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ L LT L L L I D + L+ L NL L L + ++ S ++HLS LT L
Sbjct: 196 -IEPLSNLTKLTYLTLIENKISD--IKPLSNLTNLTALYLWNNEI--SDIKHLSNLTKLT 250
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+ LS ISD ++ L+ L++L SL LD QI+D + L++LT LT+L+L +I+D
Sbjct: 251 YLLLSENKISD--IKPLSNLTNLTSLGLDENQISD--IKPLSNLTNLTYLNLGLNQISD- 305
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
L N NL SL + + + ++ + +L++LT ++L N ++D ++ +S +T L
Sbjct: 306 -IKVLSNLTNLTSLYLDYNQI--SNIQPLFNLNNLTKIDLDYN-QISD--IKPLSNMTKL 359
Query: 474 VSLNVSNSRITSAG 487
L + N+ I
Sbjct: 360 EKLEIQNNPIPDKA 373
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 142/262 (54%), Gaps = 30/262 (11%)
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 302
T C + L L L L ++SD + S + +L L+LGFN+I D + L LT
Sbjct: 60 TQNCNQANQKLTQLKELKLGSNKISD--IKPLSNLNNLIYLDLGFNQIID--IKPLSNLT 115
Query: 303 NLESLNLDSCGIGD-EGLVNLTGLCNLKCL--ELSDTQVGSSGLRHLSGLTNLESINLSF 359
NL +N+ I D + L NLT L L + E SD ++ LS LTNL + LS
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSD-------IKPLSNLTNLIYLGLSR 168
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
I+D ++ L+ L++L +L+L +I+D + L++LT LT+L L +I+D L
Sbjct: 169 NQIND--IKPLSNLTNLTTLDLIENKISD--IEPLSNLTKLTYLTLIENKISDIKP--LS 222
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
N NL +L + ++D +KH+ +L+ LT L LS+N ++D ++ +S LT L SL +
Sbjct: 223 NLTNLTALYLWNNEISD--IKHLSNLTKLTYLLLSEN-KISD--IKPLSNLTNLTSLGLD 277
Query: 480 NSRITSAGLRHLKPLKNLRSLT 501
++I+ +KPL NL +LT
Sbjct: 278 ENQIS-----DIKPLSNLTNLT 294
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 121/296 (40%), Gaps = 78/296 (26%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
+L+G ++ + +I +K SNL L + I+ ++ L L+NL L RN
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSDIKPLSNLTNLIYLGLSRNQI---N 172
Query: 123 GMKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLN--IK 163
+K + L NL LDL T I + ++K L L +L
Sbjct: 173 DIKPLSNLTNLTTLDLIENKISDIEPLSNLTKLTYLTLIENKISDIKPLSNLTNLTALYL 232
Query: 164 WCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
W N I+D SD+KPLS LTNL SL + ++++D +K L
Sbjct: 233 WNNEISDIKHLSNLTKLTYLLLSENKISDIKPLSNLTNLTSLGLDENQISD-----IKPL 287
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLN 262
S +L LT LNL ++ L +L+ L SL YL+ N
Sbjct: 288 S-----------------------NLTNLTYLNLGLNQISDIKVLSNLTNLTSL-YLDYN 323
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ + + +L ++L +N+I+D + L +T LE L + + I D+
Sbjct: 324 QIS----NIQPLFNLNNLTKIDLDYNQISD--IKPLSNMTKLEKLEIQNNPIPDKA 373
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 72 SGLIHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
S + L + +NL SL D N QISD ++ LSNLT+L++ +K +
Sbjct: 260 SDIKPLSNLTNLTSLGLDEN---QISD-----IKPLSNLTNLTYLNLGLNQISDIKVLSN 311
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L NL L L+ + + N++ L L +L + SD+KPLS +T L+ L+I
Sbjct: 312 LTNLTSLYLD-----YNQISNIQPLFNLNNLTKIDLDYNQISDIKPLSNMTKLEKLEIQN 366
Query: 190 SKVTDSGIAYLK 201
+ + D ++
Sbjct: 367 NPIPDKACPFIP 378
>gi|290984372|ref|XP_002674901.1| predicted protein [Naegleria gruberi]
gi|284088494|gb|EFC42157.1| predicted protein [Naegleria gruberi]
Length = 599
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 194/427 (45%), Gaps = 34/427 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + + G H+ L LD N + I + G+E + + LT L
Sbjct: 167 SKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNM-IGNEGIELISRMEQLTDLDV 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I ++G+K+ + +L L++ G + L + +L++L I CN I
Sbjct: 226 MDNN-IRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNL-ITACNNIGMKGF 283
Query: 174 KPLSGLTNLKSLQISC--SKVTD--------SGIAYL------KGLSISSVIFILCSMII 217
LS L NL+SL I K TD + + + KG S + L + I
Sbjct: 284 SSLSTLLNLESLVILGLDGKSTDFIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTI 343
Query: 218 R--------LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
R L C+ F +KLT LN+ C + S+ L +L +L+L+ ++ +
Sbjct: 344 RGRNIADGDLECIGQF----KKLTTLNVPSCNINQG-FKSICGLKNLTFLDLSYNKI--E 396
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
E + + SL L++ N I E + L NL +L + I DEG+ L+ + L
Sbjct: 397 SVESITNLKSLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLT 456
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L +++ Q+ G + +S L S++L+ I + L+ L++L L + +I D
Sbjct: 457 TLGVAENQISIEGAKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYGNRIRDE 516
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G ++++ LT LD+ ITD GA + N L +L I + D G K I + LT
Sbjct: 517 GAKYISTMQQLTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLT 576
Query: 450 LLNLSQN 456
+L++ N
Sbjct: 577 ILDIDYN 583
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 8/287 (2%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F+ +++LT L++ + ++S L L LN+ + ++ +G ++ SK+ L L
Sbjct: 117 FIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQTKMGVEGAKELSKLKELTSLE 176
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G N + E H+ + L L++++ IG+EG+ ++ + L L++ D + S G++
Sbjct: 177 IGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISRMEQLTDLDVMDNNIRSEGVK 236
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L + +L ++N+ I D L + LK+L I G ++L++L L L
Sbjct: 237 SLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKGFSSLSTLLNLESLV 296
Query: 405 LFG--ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
+ G + TD ++R L LE G L G I LS+LT L + + N+ D
Sbjct: 297 ILGLDGKSTD----FIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTI-RGRNIADG 351
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
LE I L +LNV + I + G + + LKNL L L K+ +
Sbjct: 352 DLECIGQFKKLTTLNVPSCNI-NQGFKSICGLKNLTFLDLSYNKIES 397
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 122/278 (43%), Gaps = 15/278 (5%)
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
+ + L ++ C+L + ++ L L++ N I + + + L+ L LN+
Sbjct: 97 MKGMIRLEISYCRLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQT 156
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
+G EG L+ L L LE+ D + S G H++ + L ++++ I + + ++
Sbjct: 157 KMGVEGAKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISR 216
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
+ L L++ I G+ +L + LT+L++ I D GA L K L++L
Sbjct: 217 MEQLTDLDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNL----- 271
Query: 433 GLTDAGVKHIKDLSSL-TLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+T +K SSL TLLNL L K+ + I + L L S + G
Sbjct: 272 -ITACNNIGMKGFSSLSTLLNLESLVILGLDGKSTDFIREMNQLTRLEFYGSNLEPKGFD 330
Query: 490 HLKPLKNLRSLTLESCKVTANDI------KRLQSRDLP 521
+ L NL LT+ + D+ K+L + ++P
Sbjct: 331 PISHLSNLTFLTIRGRNIADGDLECIGQFKKLTTLNVP 368
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 130/300 (43%), Gaps = 35/300 (11%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K D I + + L ++ GS++ G + SNL L I+DG LE +
Sbjct: 299 GLDGKSTDFI-REMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR-GRNIADGDLECI 356
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESL 160
LT+L+ N QG K+ GL NL LDL +I + NLK L +L+ +
Sbjct: 357 GQFKKLTTLNVPSCN--INQGFKSICGLKNLTFLDLSY-NKIESVESITNLKSLTQLD-I 412
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-------------KGLSISS 207
N N I K +S L NL +LQI + + D GI YL +SI
Sbjct: 413 N---GNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQISIEG 469
Query: 208 VIFI----------LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
FI L + +I + L+ L LT L + G + +S + L
Sbjct: 470 AKFISKSHQLTSLDLTNNVIETEGAKI-LSELNNLTGLFVYGNRIRDEGAKYISTMQQLT 528
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L++ +++D+G + S + L L + NEI DE + G+ L L++D + +E
Sbjct: 529 ILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDIDYNVLSEE 588
>gi|62632752|ref|NP_001015043.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338219|gb|AAI63001.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338703|gb|AAI63002.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
Length = 400
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 162/288 (56%), Gaps = 23/288 (7%)
Query: 250 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 305
+ + SL LNL+ C Q++D + ++ + +L+VL LG + IT+ L+ + GL L+
Sbjct: 113 VQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLK 172
Query: 306 SLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLES 354
SLNL SC + D G+ +L G+ +L+ L L D Q + L+H+S GLT L+
Sbjct: 173 SLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 232
Query: 355 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARI 410
+NLSF G ISD + L+ ++SL SLNL + I+DTG+ L T L+ LD+ F +I
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 292
Query: 411 TDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+
Sbjct: 293 GDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIA 352
Query: 469 -GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
LT L +++ ++IT GL + L L+ L L ++T ++ R
Sbjct: 353 DHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 177/345 (51%), Gaps = 42/345 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ L I+ + L S+ +
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGL-----LLIAWGLHRLKSLNL 176
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 274
R C HV + + +L G +AA CL SL YL L CQ L+D +
Sbjct: 177 R-SCRHV-----SDVGIGHLAGMTRSAAEGCL-------SLEYLTLQDCQKLTDLSLKHI 223
Query: 275 SK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKC 330
SK + LKVLNL F I+D ++HL +T+L SLNL SC I D G+++L G L
Sbjct: 224 SKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSG 283
Query: 331 LELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQI 386
L++S ++G L +++ GL L+S++L ISD + R + + L++LN+ +I
Sbjct: 284 LDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRI 343
Query: 387 TDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
TD GL + LT LT +DL+G +IT G + L+ L +
Sbjct: 344 TDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 388
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 140/283 (49%), Gaps = 51/283 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-------GLSIS----- 206
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L GL +S
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 292
Query: 207 ---SVIFI-----------LCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS 251
S+ +I LCS I ++ + + +L LN+ C +T L+ ++
Sbjct: 293 GDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIA 352
Query: 252 -ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L L ++L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 353 DHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 141
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 399 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L +L L ++TD ++ + L+ +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 202 LSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 260
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 511 DIKRL 515
I R+
Sbjct: 321 GINRM 325
>gi|343413823|emb|CCD21194.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 707
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 156/478 (32%), Positives = 248/478 (51%), Gaps = 48/478 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 182 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 236
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L L L CT I +
Sbjct: 237 CTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSELSSLRTLGLSHCTGI-TDVSP 291
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS-ISSV 208
L L L +L++ C ITD + PLS L++L++L +S C+ +TD ++ L LS + ++
Sbjct: 292 LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTL 347
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
F+ C+ I + L L+SL+ L + G +T + LS L L L L+ C
Sbjct: 348 YFLYCTGITDVSPL-SELSSLRTLYFSHCTG--ITD--VSPLSELSGLRMLYLSHCTGIT 402
Query: 269 DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC 326
D S SL++L+ ITD + L L++L +L+L C GI D + L+ L
Sbjct: 403 D-VSPLSVFSSLRMLDFSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELS 457
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-AR 384
+L L+LS G + + LS L++L +++LS TGI+D S L+ LSSL +L+L
Sbjct: 458 SLHTLDLSHCT-GITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLCTLDLSHCT 514
Query: 385 QITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 442
ITD ++ L+ L+ L LDL ITD + L F +L +L++ G+TD V +
Sbjct: 515 GITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSEFSSLHTLDLSHCTGITD--VSPL 568
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+LSSL +LNLS +TD + +S + L +L++S+ G+ + PL L SL
Sbjct: 569 SELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSH----CTGITDVSPLSKLSSL 620
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD + L + S+L +LD + C I+D + L LS+L L+
Sbjct: 523 SELSSLRTLDLSHCTGITD--VSPLSEFSSLHTLDLSHCTGITD--VSPLSELSSLRMLN 578
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDS 171
IT + + +L LDL CT G+ ++ L KL SL+I +C +
Sbjct: 579 LSHCTGIT--DVSPLSEFSSLHTLDLSHCT----GITDVSPLSKLSSLHILGLSHCTGIT 632
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTD 194
D+ PL+ + + L +S C+ +TD
Sbjct: 633 DVSPLTTIIGFEKLYLSNCTGITD 656
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 26/210 (12%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L ++L L L C GI D + L+ L +L+ L+LS G + + LS ++LE ++
Sbjct: 16 LSVFSSLRMLYLSHCTGITD--VSPLSKLSSLRTLDLSHCT-GITDVSPLSVFSSLEKLD 72
Query: 357 LSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARIT 411
LS TGI+D S L+ LSSL++L+L TG+ ++ L+ L+ L G IT
Sbjct: 73 LSHCTGITDVS--PLSKLSSLRTLDLSHC----TGITDVSPLSKLSSLHTLGLSHCTGIT 126
Query: 412 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
D + L +L +L++ G+TD V + +LSSL L LS +TD + +S L
Sbjct: 127 D--VSPLSKLSSLHTLDLSHCTGITD--VSPLSELSSLRTLGLSHCTGITD--VSPLSEL 180
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ L +L++S+ G+ + PL L SL
Sbjct: 181 SSLRTLDLSH----CTGITDVSPLSKLSSL 206
>gi|430741732|ref|YP_007200861.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
gi|430013452|gb|AGA25166.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
Length = 304
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 4/216 (1%)
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
GS+ L I+DE L L+ L + + D GL L GL L+ + +
Sbjct: 77 GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136
Query: 338 VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
V ++GL HL G T+L S+ L I+D L LAGL++L+ LNL +I GL L
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L L L L TD+G A L F NL+ L + G TDAG+ + L SLT L L +
Sbjct: 197 LGRLRTLVL--GSTTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGL-EA 253
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
+LT+ L ++GL L L++ + ++ A + K
Sbjct: 254 GDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEKFK 289
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 3/209 (1%)
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
L P++ +L L L + ++D G + + L+ + ++T+ L
Sbjct: 83 TLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGL 142
Query: 296 VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
HLKG T+L SL L I DEGLV+L GL NL+ L LS ++ GL HL+ L L +
Sbjct: 143 AHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRT 202
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ L T +D L +L ++LK L L + TD GLA L+ L LT L L +T++
Sbjct: 203 LVLGST--TDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAV 260
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
++ NL L++ G ++ A ++ K
Sbjct: 261 LIHVAGLPNLERLDLGGAPVSQAAIEKFK 289
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 3/201 (1%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
GS+ L + +SD+ L+ L + +TD L L GL L +
Sbjct: 77 GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136
Query: 314 IGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
+ + GL +L G +L LEL ++ GL HL+GLTNLE +NLS I+ L LA
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
L L++L L + TD GLA L T L L L + TD+G A L ++L L + G
Sbjct: 197 LGRLRTLVLGS--TTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAG 254
Query: 433 GLTDAGVKHIKDLSSLTLLNL 453
LT+A + H+ L +L L+L
Sbjct: 255 DLTEAVLIHVAGLPNLERLDL 275
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 100/209 (47%), Gaps = 32/209 (15%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL L L+ + + F ++++ GL HL+G ++L SL R IT +G+ A
Sbjct: 113 MTDTGLAQLGGLPRLRQV-YCFKPKVTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLA 171
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
GL NL KL+L RI G GL +L L +L +L + TD+ + L TNLK L +
Sbjct: 172 GLTNLEKLNLS-GARIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQLGRFTNLKQLYL 227
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
K TD+G+A L+ L+ LT L LE +T A L
Sbjct: 228 GTGKYTDAGLAE--------------------------LSKLRSLTELGLEAGDLTEAVL 261
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
++ L +L L+L +S EKF +
Sbjct: 262 IHVAGLPNLERLDLGGAPVSQAAIEKFKR 290
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
EITDE LVHL GLTNLE LNL I GL +L L L+ L L T +GL L
Sbjct: 161 EITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRTLVLGSTT--DAGLAQLGR 218
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
TNL+ + L +D L +L+ L SL L L+A +T+ L + L L LDL GA
Sbjct: 219 FTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGA 278
Query: 409 RITDSGAAYLRNFKNLRS 426
++ A + FK R
Sbjct: 279 PVSQ---AAIEKFKRARP 293
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 5/204 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I+D L L+ L + +TD+G+A L GL ++ + H L
Sbjct: 89 ISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAH--LK 146
Query: 228 SLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
L L L P +T L L+ L +L LNL+ +++ G +++G L+ L LG
Sbjct: 147 GATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRTLVLG 206
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
TD L L TNL+ L L + D GL L+ L +L L L + + L H+
Sbjct: 207 --STTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHV 264
Query: 347 SGLTNLESINLSFTGISDGSLRKL 370
+GL NLE ++L +S ++ K
Sbjct: 265 AGLPNLERLDLGGAPVSQAAIEKF 288
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%)
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
S+ L I+D AL L L + +TD+G A L LR + +
Sbjct: 78 SINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKV 137
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
T+AG+ H+K + L L L + +TD+ L ++GLT L LN+S +RI GL HL L
Sbjct: 138 TNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARL 197
Query: 495 KNLRSLTLESC 505
LR+L L S
Sbjct: 198 GRLRTLVLGST 208
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD GL+HL +NL+ L+ + +I+ GL HL L L +L + T G+
Sbjct: 160 PEITDEGLVHLAGLTNLEKLNLSGA-RIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQ 215
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
NL +L L GL L L L L ++ +T++ + ++GL NL+ L
Sbjct: 216 LGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLE-AGDLTEAVLIHVAGLPNLERLD 274
Query: 187 ISCSKVTDSGIAYLK 201
+ + V+ + I K
Sbjct: 275 LGGAPVSQAAIEKFK 289
>gi|290993851|ref|XP_002679546.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284093163|gb|EFC46802.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 385
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 139/281 (49%), Gaps = 11/281 (3%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LT L+ + + LEG + +S L L LN+ ++ G + S++ L L++
Sbjct: 113 LTELE-INQIGLEGTKI-------ISELNQLTSLNIANNKMGKQGAKYISEMKQLTKLDI 164
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G N++ E + +++ L L +L++ + IG G + L + L L +S +G G +
Sbjct: 165 GTNQLGVEGVQYIRKLDKLTALSVFNNVIGFRGAMLLRKMTQLTELNISTNAIGDVGAKF 224
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S L NL +NLSF IS + ++ L L LN++ + + G+ ++ + LT+L L
Sbjct: 225 VSDLPNLAILNLSFNSISYVGAQFISKLPKLTELNMNQNDLGNEGVKFISGIISLTNLSL 284
Query: 406 FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
RI + G ++ K LR L++C + DAG K + L LT L+L N N+ +
Sbjct: 285 QTTRIDEHGVKFISEKLKQLRILKLCENNIGDAGAKFLITLEKLTDLSLYSN-NIGYEGA 343
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLES 504
+ IS + L L + + I G + + + LK L+ L+
Sbjct: 344 KAISTMKALTHLRIHGNPIGIEGAKEIYEQLKELKEYCLDQ 384
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 128/287 (44%), Gaps = 14/287 (4%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+S + + G + L L+ N QI G + + L+ LTSL+ NN + QG
Sbjct: 94 ISWNRIGIEGAKAISQLKQLTELEIN---QIGLEGTKIISELNQLTSLNIA-NNKMGKQG 149
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
K + + L KLD+ G+ ++ L KL +L++ + N I L +T L
Sbjct: 150 AKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSV-FNNVIGFRGAMLLRKMTQLT 208
Query: 184 SLQISCSKVTDSGIAY---LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
L IS + + D G + L L+I ++ F S + F++ L KLT LN+
Sbjct: 209 ELNISTNAIGDVGAKFVSDLPNLAILNLSFNSIS-----YVGAQFISKLPKLTELNMNQN 263
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLK 299
+ + +S + SL L+L ++ + G + S K+ L++L L N I D L
Sbjct: 264 DLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAGAKFLI 323
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
L L L+L S IG EG ++ + L L + +G G + +
Sbjct: 324 TLEKLTDLSLYSNNIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEI 370
>gi|317420071|emb|CBN82107.1| Uncharacterized protein [Dicentrarchus labrax]
Length = 889
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 195/419 (46%), Gaps = 27/419 (6%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + R L +LE F C LQ L YP ++ + + + ++L + L
Sbjct: 469 ELAELLLNHMSRERLLRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRA-FTALKHLSL 527
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL + LQ L+ C +++D L+H+ GL +L LS + +T G
Sbjct: 528 VNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTK-VTDAG 586
Query: 124 MKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + LV L + +L L+IK D+ L+ L+
Sbjct: 587 MVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV---KDVSALARLS 643
Query: 181 NLKSLQISCSKVTDSGIAY------LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
NL++L + + VT+S + + L LS++ + + +++ S +LT
Sbjct: 644 NLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVADGNQALQII-------SDLRLTQ 696
Query: 235 LNLEG--CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L L G + L + Q++D G + S + LK L+L ++TD
Sbjct: 697 LTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTD 756
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRH-LSGLT 350
L L+GL L+ L LD + G+ +L T L +L+ L L+ TQVG + +R +
Sbjct: 757 AGLPSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRCN 816
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
L +NLS T I+D L+ L + L +NLD ++ G+A L S T ++ + R
Sbjct: 817 QLVKLNLSRTRITDHGLKCLKHM-HLAQVNLDGTGVSLIGIANLLSFTNISSIRASNTR 874
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 22/306 (7%)
Query: 229 LQKLTLLNLEGCPV-----------TAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSK 276
L+ TL GCP+ T L L A +L +L+L N ++D G FS
Sbjct: 484 LRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSS 543
Query: 277 IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLEL 333
+ L+ LNL +++TD CL H+ GL +L L+LD + D G+V + L L L
Sbjct: 544 LAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSL 603
Query: 334 SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
+ T V + L L + L +++ T + D S LA LS+L++LNLD +T++ L
Sbjct: 604 NQTAVTEASLVVLPTCVPQLRLLSIKQTKVKDVS--ALARLSNLQTLNLDVTGVTESSLE 661
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLT 449
L+S L+ L L G + D G L+ +LR ++ G +TD+G+ + LS L
Sbjct: 662 HLSSHPTLSSLSLAGIPVAD-GNQALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLL 720
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L+L+ +TD+ + +S +T L L++SN+++T AGL L+ L+ L+ L L+ VT+
Sbjct: 721 ELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGLPSLRGLQELQELCLDRTAVTS 780
Query: 510 NDIKRL 515
+ L
Sbjct: 781 RGVADL 786
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 164/357 (45%), Gaps = 57/357 (15%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L ++ T GL L KL+ LN+ C+ +TDS ++ ++GL +L
Sbjct: 516 LRAFTALKHLSLVNSPLIT--DSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLC 573
Query: 184 SLQISCSKVTDSGIA-YLKG-------LSISSVIFILCSMIIRLFCLHVF---------- 225
L + +KVTD+G+ YL+ LS++ S+++ C+
Sbjct: 574 FLSLDQTKVTDAGMVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV 633
Query: 226 -----LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
L L L LNL+ VT + L+ LS+ +L L+L ++ DG + I L
Sbjct: 634 KDVSALARLSNLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA-DGNQALQIISDL 692
Query: 281 KVLNL----------------------------GFNEITDECLVHLKGLTNLESLNLDSC 312
++ L + ++TD+ + L +T L+ L+L +
Sbjct: 693 RLTQLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNT 752
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-L 370
+ D GL +L GL L+ L L T V S G+ L + L +L+ + L+ T + D +R+ +
Sbjct: 753 QVTDAGLPSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGV 812
Query: 371 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+ L LNL +ITD GL L + L ++L G ++ G A L +F N+ S+
Sbjct: 813 IRCNQLVKLNLSRTRITDHGLKCLKHM-HLAQVNLDGTGVSLIGIANLLSFTNISSI 868
>gi|83592173|ref|YP_425925.1| hypothetical protein Rru_A0837 [Rhodospirillum rubrum ATCC 11170]
gi|386348881|ref|YP_006047129.1| hypothetical protein F11_04310 [Rhodospirillum rubrum F11]
gi|83575087|gb|ABC21638.1| Leucine-rich repeat [Rhodospirillum rubrum ATCC 11170]
gi|346717317|gb|AEO47332.1| leucine-rich repeat-containing protein [Rhodospirillum rubrum F11]
Length = 1085
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 123/221 (55%), Gaps = 20/221 (9%)
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+TD L L GL NL+ L L + D L LTG+ +L+ L LS+TQV + L L+GL
Sbjct: 84 VTD--LTPLTGLENLQGLFLSYTAVTD--LTPLTGIKSLQSLILSETQV--TDLTPLAGL 137
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
NL+SINLS T I+D L LAGL +L++L L +TD LA L L L HL L G R
Sbjct: 138 KNLQSINLSATQITD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQHLILLGTR 193
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTD-KTLELI 467
+ D L K+L+SL++ G +T+ A + +K L SL L + +TD L +
Sbjct: 194 VID--LTPLAGLKSLQSLDLSGTRVTNIAPLVGLKSLQSLDL----RRTRVTDIAPLVGL 247
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L L SLN+S + +T L L L+NL++LTL VT
Sbjct: 248 KSLKSLQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTTVT 286
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 143/285 (50%), Gaps = 40/285 (14%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGL 203
L L G+ L+SL + +D+ PL+GL NL+S+ +S +++TD +G+ L+ L
Sbjct: 109 LTPLTGIKSLQSLILSETQV---TDLTPLAGLKNLQSINLSATQITDLAPLAGLENLQNL 165
Query: 204 SISSV----------------IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
++S + +L + +I L L L+ L L+L G VT +
Sbjct: 166 TLSYTTVTDLAPLAGLENLQHLILLGTRVIDL----TPLAGLKSLQSLDLSGTRVT--NI 219
Query: 248 DSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L L SL L+L R +++D + SL+ LNL +TD L L GL NL++
Sbjct: 220 APLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRTPVTD--LAPLAGLENLQN 277
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L L + D L L GL NL+ ++L T+V L L+GL NL++I+L T + D
Sbjct: 278 LTLSYTTVTD--LAPLAGLENLQNIDLGGTEV--IDLAPLAGLENLQNIDLGGTEVID-- 331
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L LAGL +L++L L +TD LA L L L +D G RIT
Sbjct: 332 LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQSIDCSGCRIT 374
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 167/341 (48%), Gaps = 52/341 (15%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+D+ PL+GL NL+ L +S + VTD + L G+ SLQ
Sbjct: 85 TDLTPLTGLENLQGLFLSYTAVTD--LTPLTGIK-----------------------SLQ 119
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
L L + +T L+ L +L +NL+ Q++D + + +L+ L L + +
Sbjct: 120 SLILSETQVTDLT-----PLAGLKNLQSINLSATQITD--LAPLAGLENLQNLTLSYTTV 172
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
TD L L GL NL+ L L + D L L GL +L+ L+LS T+V + + L GL
Sbjct: 173 TD--LAPLAGLENLQHLILLGTRVID--LTPLAGLKSLQSLDLSGTRV--TNIAPLVGLK 226
Query: 351 NLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+L+S++L T ++D L L L SL+SLNL +TD LA L L L +L L
Sbjct: 227 SLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTT 284
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
+TD A L +NL+++++ G + DL+ L L QN +L + ++
Sbjct: 285 VTD--LAPLAGLENLQNIDLGG--------TEVIDLAPLAGLENLQNIDLGGTEVIDLAP 334
Query: 470 LTGLVSL-NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L GL +L N++ S T L L L+NL+S+ C++T+
Sbjct: 335 LAGLENLQNLTLSYTTVTDLAPLAGLENLQSIDCSGCRITS 375
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 14/148 (9%)
Query: 58 SLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL S+DL + VTD + L+ LK +LQSL+ + ++D L L GL NL +L+
Sbjct: 227 SLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRT-PVTD--LAPLAGLENLQNLTL--- 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ T + AGL NL +DL I L L GL L+++++ I D+ PL
Sbjct: 281 SYTTVTDLAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEVI---DLAPL 335
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLS 204
+GL NL++L +S + VTD +A L GL
Sbjct: 336 AGLENLQNLTLSYTTVTD--LAPLAGLE 361
>gi|343414367|emb|CCD21012.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1699
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 144/439 (32%), Positives = 234/439 (53%), Gaps = 49/439 (11%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD + L + S+L++LD + C I+D + L LS+L +L
Sbjct: 861 SELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 916
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDS 171
IT + + L +L LDL CT G+ ++ L KL SL + +C +
Sbjct: 917 LSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITDVSPLSKLSSLRTLDLSHCTGIT 970
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
D+ PLS L++L++L +S C+ +TD S ++ L+ L +S C+ I + L
Sbjct: 971 DVSPLSELSSLRTLDLSHCTGITDVSPLSKLSSLRTLDLSH-----CTGITDVS----PL 1021
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
+ L L L+L C + LS L SL L+L+ C D SK+ SL+ L+L
Sbjct: 1022 SELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLRTLDLS 1079
Query: 287 F-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
ITD + L L++L +L+L C GI D + L+ L +L+ L+LS G + +
Sbjct: 1080 HCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVS 1134
Query: 345 HLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTH 402
LS L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L
Sbjct: 1135 PLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCT 1190
Query: 403 LDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
L+L ITD + L +LR+L++ G+TD V + +LS+ L+LS +T
Sbjct: 1191 LELSHCTGITD--VSPLSELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSHCTGIT 1246
Query: 461 DKTLELISGLTGLVSLNVS 479
D + +S L+ L +L++S
Sbjct: 1247 D--VSPLSVLSSLRTLDLS 1263
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 161/526 (30%), Positives = 255/526 (48%), Gaps = 98/526 (18%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L + S+L++LD +
Sbjct: 888 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 942
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT G+ +
Sbjct: 943 CTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITD 994
Query: 151 LKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLS 204
+ L KL SL + +C +D+ PLS L++L++L +S C+ +TD S ++ L+ L
Sbjct: 995 VSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITDVSPLSELSSLRTLD 1054
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
+S C+ I + L+ L L L+L C + LS L SL L+L+ C
Sbjct: 1055 LSH-----CTGITDVS----PLSKLSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHC 1104
Query: 265 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
D S++ SL+ L+L ITD + L L++L +L+L C GI D + L
Sbjct: 1105 TGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPL 1159
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 381
+ L +L+ L+LS G + + LS L++L ++ LS TGI+D S L+ LSSL++L+L
Sbjct: 1160 SELSSLRTLDLSHC-TGITDVSPLSKLSSLCTLELSHCTGITDVS--PLSELSSLRTLDL 1216
Query: 382 D-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGG----- 432
R ITD ++ L+ L+ LDL ITD + L +LR+L++ C G
Sbjct: 1217 SHCRGITD--VSPLSELSNFVQLDLSHCTGITD--VSPLSVLSSLRTLDLSYCTGITNVS 1272
Query: 433 -----------------GLTD---------------------AGVKHIKDLSSLTLLNLS 454
G+TD A V + +LSSL +LNLS
Sbjct: 1273 PLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRGIANVSPLSNLSSLRMLNLS 1332
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+TD + +S L+ L +L++S+ G+ + PL L SL
Sbjct: 1333 HCTGITD--VSPLSVLSSLRTLDLSH----CTGITDVSPLSELSSL 1372
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 155/499 (31%), Positives = 242/499 (48%), Gaps = 90/499 (18%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L +L+ +
Sbjct: 1141 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSH 1195
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L N V+LDL CT I +
Sbjct: 1196 CTGITD--VSPLSELSSLRTLDLSHCRGIT--DVSPLSELSNFVQLDLSHCTGI-TDVSP 1250
Query: 151 LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQISC 189
L L L +L++ +C IT+ +D+ PLS L++L++L +S
Sbjct: 1251 LSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSH 1310
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS 249
+ GIA + LS +L L +LNL C +
Sbjct: 1311 CR----GIANVSPLS-----------------------NLSSLRMLNLSHC-TGITDVSP 1342
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 308
LS L SL L+L+ C D S++ SL+ L+L ITD + L L++L +L+
Sbjct: 1343 LSVLSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLD 1399
Query: 309 LDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGS 366
L C GI D + L+ L +L+ L LS G + + LS L++L +++LS TGI+D S
Sbjct: 1400 LSHCTGITD--VSPLSVLSSLRTLGLSHC-TGITDVSPLSELSSLRTLDLSHCTGITDVS 1456
Query: 367 LRKLAGLSSLKSLNLD-ARQITD-TGLAALTSLT--GLTHLDLFGARITDSGAAYLRNFK 422
L+ LSSL++L+L ITD + L+ +SL GL+H ITD + L
Sbjct: 1457 --PLSELSSLRTLDLSHCTGITDVSPLSVFSSLRTLGLSHC----TGITD--VSPLSELS 1508
Query: 423 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
NLR+L++ G+TD V + +LSSL L+LS +TD + +S L+ L +L++S+
Sbjct: 1509 NLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH- 1563
Query: 482 RITSAGLRHLKPLKNLRSL 500
G+ + PL L SL
Sbjct: 1564 ---CTGITDVSPLSKLSSL 1579
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 153/480 (31%), Positives = 234/480 (48%), Gaps = 70/480 (14%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS +TD + L + SN LD + C I+D + L LS+L +L
Sbjct: 1206 SELSSLRTLDLSHCRGITD--VSPLSELSNFVQLDLSHCTGITD--VSPLSVLSSLRTLD 1261
Query: 113 FRRNNAIT---------------------AQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
IT + + L +L LDL C I + L
Sbjct: 1262 LSYCTGITNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRGI-ANVSPL 1320
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLSIS 206
L L LN+ C ITD + PLS L++L++L +S C+ +TD S ++ L+ L +S
Sbjct: 1321 SNLSSLRMLNLSHCTGITD--VSPLSVLSSLRTLDLSHCTGITDVSPLSELSSLRTLDLS 1378
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
C+ I + L+ L L L+L C + LS L SL L L+ C
Sbjct: 1379 H-----CTGITDVS----PLSKLSSLRTLDLSHC-TGITDVSPLSVLSSLRTLGLSHCTG 1428
Query: 267 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
D S++ SL+ L+L ITD + L L++L +L+L C GI D + L+
Sbjct: 1429 ITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSV 1483
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD- 382
+L+ L LS G + + LS L+NL +++LS TGI+D S L+ LSSL++L+L
Sbjct: 1484 FSSLRTLGLSHC-TGITDVSPLSELSNLRTLDLSHCTGITDVS--PLSELSSLRTLDLSH 1540
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 440
ITD ++ L+ L+ L LDL ITD + L +LR+L++ G+TD V
Sbjct: 1541 CTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VS 1594
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ +LSSL L+LS +TD + +S L+ L +L++S+ G+ + PL L SL
Sbjct: 1595 PLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH----CTGITDVSPLSKLSSL 1648
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 162/528 (30%), Positives = 258/528 (48%), Gaps = 89/528 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 1026 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1080
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 1081 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1135
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS-ISSV 208
L L L +L++ C ITD + PLS L++L++L +S C+ +TD ++ L LS + ++
Sbjct: 1136 LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTL 1191
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
C+ I + L L+SL+ L L + G +T + LS L + L+L+ C
Sbjct: 1192 ELSHCTGITDVSPL-SELSSLRTLDLSHCRG--ITD--VSPLSELSNFVQLDLSHCTGIT 1246
Query: 269 DGCEKFSKIGSLKVLNLGF------------------------NEITDECLVHLKGLTNL 304
D S + SL+ L+L + ITD + L L++L
Sbjct: 1247 D-VSPLSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSHCTGITD--VSPLSELSSL 1303
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLSF-TG 361
+L+L C G+ N++ L NL L + + G + + LS L++L +++LS TG
Sbjct: 1304 RTLDLSHC----RGIANVSPLSNLSSLRMLNLSHCTGITDVSPLSVLSSLRTLDLSHCTG 1359
Query: 362 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLR 419
I+D S L+ LSSL++L+L ITD ++ L+ L+ L LDL ITD + L
Sbjct: 1360 ITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLS 1413
Query: 420 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD----------KTLEL-- 466
+LR+L + G+TD V + +LSSL L+LS +TD +TL+L
Sbjct: 1414 VLSSLRTLGLSHCTGITD--VSPLSELSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSH 1471
Query: 467 ISGLTGLVSLNVSNSRITSAGLRH---------LKPLKNLRSLTLESC 505
+G+T + L+V +S + + GL H L L NLR+L L C
Sbjct: 1472 CTGITDVSPLSVFSS-LRTLGLSHCTGITDVSPLSELSNLRTLDLSHC 1518
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 156/515 (30%), Positives = 251/515 (48%), Gaps = 86/515 (16%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 957 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1011
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT G+ +
Sbjct: 1012 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITD 1063
Query: 151 LKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLS 204
+ L KL SL + +C +D+ PLS L++L++L +S C+ +TD S ++ L+ L
Sbjct: 1064 VSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITDVSPLSELSSLRTLD 1123
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
+S C+ I + L+ L L L+L C + LS L SL L+L+ C
Sbjct: 1124 LSH-----CTGITDVS----PLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHC 1173
Query: 265 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
D SK+ SL L L ITD + L L++L +L+L C GI D + L
Sbjct: 1174 TGITD-VSPLSKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCRGITD--VSPL 1228
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----------------------- 359
+ L N L+LS G + + LS L++L +++LS+
Sbjct: 1229 SELSNFVQLDLSHC-TGITDVSPLSVLSSLRTLDLSYCTGITNVSPLSNLSSLRSLDLSH 1287
Query: 360 -TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSG 414
TGI+D S L+ LSSL++L+L + G+A ++ L+ L+ L + ITD
Sbjct: 1288 CTGITDVS--PLSELSSLRTLDLSHCR----GIANVSPLSNLSSLRMLNLSHCTGITD-- 1339
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ L +LR+L++ G+TD V + +LSSL L+LS +TD + +S L+ L
Sbjct: 1340 VSPLSVLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSL 1395
Query: 474 VSLNVSNSRITSAGLRHLKP---LKNLRSLTLESC 505
+L++S+ G+ + P L +LR+L L C
Sbjct: 1396 RTLDLSH----CTGITDVSPLSVLSSLRTLGLSHC 1426
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 212/427 (49%), Gaps = 40/427 (9%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+ + LD + C I+D + L LS+L +L IT + + + L KL L
Sbjct: 496 SSFEKLDLSHCTGITD--VSPLSVLSSLRTLDISHCTGIT--DVSPLSKMNGLQKLYLSH 551
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
CT I + L L E L++ C ITD + PLS L++L +L +S C+ +T+
Sbjct: 552 CTGI-TDVPPLSALSSFEKLDLSHCTGITD--VSPLSKLSSLHTLDLSHCTGITNVS-PL 607
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
LK S+ + C+ I + L+ L L L+L C + LS SL L
Sbjct: 608 LKFSSLRMLDISHCTGITNVS----PLSELSSLRTLDLSHC-TGITDVSPLSKFSSLHTL 662
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDE 317
+L+ C SK SL++L++ IT+ + L L++L +L+L C GI D
Sbjct: 663 DLSHCT-GITNVSPLSKFSSLRMLDISHCTGITN--VSPLSKLSSLHTLDLSHCTGITD- 718
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
+ L+ L +L+ L+ S G + + LS L++L ++++S TGI+D S L+ LSSL
Sbjct: 719 -VSPLSKLSSLRTLDFSHC-TGITNVSPLSELSSLRTLDISHCTGITDVS--PLSELSSL 774
Query: 377 KSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GG 433
++L+L TD T ++ L+ ++ L LDL +TD + L L L + G
Sbjct: 775 RTLDL--SHCTDITNVSPLSKISTLQKLDLSHCTGVTD--VSPLSKMIGLEKLYLSHCTG 830
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+TD V + +LSSL +L+LS +TD + +S L+ L +L++S+ G+ + P
Sbjct: 831 ITD--VPPLSELSSLRMLDLSHCTGITD--VSPLSELSSLHTLDLSH----CTGITDVSP 882
Query: 494 LKNLRSL 500
L L SL
Sbjct: 883 LSELSSL 889
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 218/441 (49%), Gaps = 42/441 (9%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+ D L L L++LD + C I+D L L LS L +L IT +
Sbjct: 345 DINDVTLRDLDGNECLRTLDLSHCTGITDVSL--LSKLSGLHTLGLSHCTGIT--DVSPL 400
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L L L CT I + L L L +L + C IT D+ PLS ++L++L I
Sbjct: 401 SNLSGLRMLGLSHCTGI-TDVSPLSELSSLRTLGLSHCTGIT--DVSPLSVFSSLRTLGI 457
Query: 188 S-CSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
S C+ +TD S ++ + GL + C+ I + L L+S +KL L + G +T
Sbjct: 458 SHCTGITDVSPLSKMNGL--QKLYLSHCTGITDVPPLSA-LSSFEKLDLSHCTG--ITD- 511
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 304
+ LS L SL L+++ C D SK+ L+ L L ITD + L L++
Sbjct: 512 -VSPLSVLSSLRTLDISHCTGITD-VSPLSKMNGLQKLYLSHCTGITD--VPPLSALSSF 567
Query: 305 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 362
E L+L C GI D + L+ L +L L+LS G + + L ++L +++S TGI
Sbjct: 568 EKLDLSHCTGITD--VSPLSKLSSLHTLDLSHC-TGITNVSPLLKFSSLRMLDISHCTGI 624
Query: 363 SDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRN 420
++ S L+ LSSL++L+L ITD ++ L+ + L LDL IT+ + L
Sbjct: 625 TNVS--PLSELSSLRTLDLSHCTGITD--VSPLSKFSSLHTLDLSHCTGITN--VSPLSK 678
Query: 421 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
F +LR L+I G+T+ V + LSSL L+LS +TD + +S L+ L +L+ S
Sbjct: 679 FSSLRMLDISHCTGITN--VSPLSKLSSLHTLDLSHCTGITD--VSPLSKLSSLRTLDFS 734
Query: 480 NSRITSAGLRHLKPLKNLRSL 500
+ G+ ++ PL L SL
Sbjct: 735 H----CTGITNVSPLSELSSL 751
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 192/367 (52%), Gaps = 40/367 (10%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL ++DLS + +TD + L + S+L++LD + C I+D + L LS+L +L
Sbjct: 1347 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
IT + + L +L L L CT I + L L L +L++ C IT D+ P
Sbjct: 1403 CTGIT--DVSPLSVLSSLRTLGLSHCTGI-TDVSPLSELSSLRTLDLSHCTGIT--DVSP 1457
Query: 176 LSGLTNLKSLQIS-CSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
LS L++L++L +S C+ +TD S + L+ L +S C+ I + L+ L
Sbjct: 1458 LSELSSLRTLDLSHCTGITDVSPLSVFSSLRTLGLSH-----CTGITDVS----PLSELS 1508
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NE 289
L L+L C + LS L SL L+L+ C D S++ SL+ L+L
Sbjct: 1509 NLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTG 1566
Query: 290 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
ITD + L L++L +L+L C GI D + L+ L +L+ L+LS G + + LS
Sbjct: 1567 ITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSE 1621
Query: 349 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLF 406
L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L LDL
Sbjct: 1622 LSSLRTLDLSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLL 1677
Query: 407 GAR-ITD 412
ITD
Sbjct: 1678 HCTGITD 1684
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 126/401 (31%), Positives = 195/401 (48%), Gaps = 76/401 (18%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 1348 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 1403 CTGITD--VSPLSVLSSLRTLGLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1457
Query: 151 LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
L L L +L++ C ITD +D+ PLS L+NL++L +S
Sbjct: 1458 LSELSSLRTLDLSHCTGITDVSPLSVFSSLRTLGLSHCTGITDVSPLSELSNLRTLDLSH 1517
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
C+ +TD ++ L LS SL+ L L + G +T +
Sbjct: 1518 CTGITD--VSPLSELS-----------------------SLRTLDLSHCTG--ITD--VS 1548
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESL 307
LS L SL L+L+ C D SK+ SL+ L+L ITD + L L++L +L
Sbjct: 1549 PLSELSSLRTLDLSHCTGITD-VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTL 1605
Query: 308 NLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDG 365
+L C GI D + L+ L +L+ L+LS G + + LS L++L +++LS TGI+D
Sbjct: 1606 DLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSKLSSLRTLDLSHCTGITDV 1662
Query: 366 SLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTHLDL 405
S L+ LSSL++L+ L ITD ++ L+ L+ L LD
Sbjct: 1663 S--PLSELSSLRTLDLLHCTGITD--VSPLSELSSLGTLDF 1699
>gi|149173736|ref|ZP_01852365.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148847266|gb|EDL61600.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 496
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 137/287 (47%), Gaps = 7/287 (2%)
Query: 225 FLTSLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+LT L L LNL+ VT A L L L L L+L ++D + L+ +
Sbjct: 138 YLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLSLACLDITDAALLALESLAWLESI 197
Query: 284 NLGFNEITDECLVHLKGLT--NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
NLG +++E +++L G +L LNL + + D+ L L LELSDT + +
Sbjct: 198 NLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQALAECLPDSQLNKLELSDTGITDA 257
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
+ L + L+FT I+D +R LA L+ L L +ITDT L L +G+
Sbjct: 258 ACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKLELFKTKITDTSLVWLAD-SGIE 316
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L L ITD+G L +F L SL++ LTD G++ + + ++L L L N ++
Sbjct: 317 DLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGLRFLSEATNLKQLQLD-NTEISH 375
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+E + L N I +AGL L +LR+L + +C VT
Sbjct: 376 AGIEFLLSLPLESL--SLNPGIDNAGLNTLVRHNSLRNLAIWNCNVT 420
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 164/349 (46%), Gaps = 36/349 (10%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I+D+ + + + NL+ L + + V+D G+ L LS + I C+ CL
Sbjct: 64 ISDAGLNFIGEMRNLERLGLYDTLVSDDGLKPLLKLSKLEKLNIACAP----GCLS---P 116
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLG 286
L+ + N+ +T L L+ L SL LNL +++D G ++ ++ L+ L+L
Sbjct: 117 GLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLSLA 176
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLR 344
+ITD L+ L+ L LES+NL + +E ++NL G +L+ L LS+T V L
Sbjct: 177 CLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQALA 236
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+ L + LS TGI+D + + L L L+ ITD G+ L + L L+
Sbjct: 237 ECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKLE 296
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
LF +ITD+ +L + + L + +TDAG+ + D +L L+L Q +LTDK
Sbjct: 297 LFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDL-QKTSLTDK-- 352
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
GLR L NL+ L L++ +++ I+
Sbjct: 353 ----------------------GLRFLSEATNLKQLQLDNTEISHAGIE 379
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 7/229 (3%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
++NL +E+ +E L HL E+L LD+ I D GL + + NL+ L L DT V
Sbjct: 32 LVNLMNSEVANEDLRHLIFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDD 91
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
GL+ L L+ LE +N++ + G L GL + + N+ QITD GL LT L+ L
Sbjct: 92 GLKPLLKLSKLEKLNIA---CAPGCLSP--GLRPVPAANVRRNQITDRGLGYLTELSSLR 146
Query: 402 HLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
L+L R+TD+G YL L+ L + +TDA + ++ L+ L +NL
Sbjct: 147 SLNLQATRVTDAGLLQYLPELPRLQRLSLACLDITDAALLALESLAWLESINLGHTAVSN 206
Query: 461 DKTLELISGLT-GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ L L+ L LN+SN+ + L P L L L +T
Sbjct: 207 EAILNLVGAKAFSLRRLNLSNTAVNDQALAECLPDSQLNKLELSDTGIT 255
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 156/383 (40%), Gaps = 74/383 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL S++L + VTD+GL+ +L + LQ L C+ I+D L L L+ L S++
Sbjct: 143 SSLRSLNLQATRVTDAGLLQYLPELPRLQRLSL-ACLDITDAALLALESLAWLESINLGH 201
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
TA +A L+ L R + VN + L + C+ DS
Sbjct: 202 ----TAVSNEAILNLVGAKAFSLRRLN-LSNTAVNDQALAE----------CLPDS---- 242
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L L++S + +TD+ C + + LT L
Sbjct: 243 -----QLNKLELSDTGITDAA----------------CQSCVE----------CEWLTDL 271
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
L +T + L+ G L L L + +++D + G ++ L LGF ITD +
Sbjct: 272 CLNFTDITDDGVRHLANCGHLRKLELFKTKITDTSLVWLADSG-IEDLGLGFTAITDAGI 330
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L LESL+L + D+GL L+ NLK L+L +T++ +G+ L L
Sbjct: 331 PALTDFPALESLDLQKTSLTDKGLRFLSEATNLKQLQLDNTEISHAGIEFLLSLP--LES 388
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-------------------TGLAALTS 396
GI + L L +SL++L + +T+ T L+ L
Sbjct: 389 LSLNPGIDNAGLNTLVRHNSLRNLAIWNCNVTNWQPLMKLELLEVLLIDDSVTDLSPLRE 448
Query: 397 LTGLTHLDLFGARITDSGAAYLR 419
L L +L L+G R + + A LR
Sbjct: 449 LDQLKYLLLWGDRFSPTELARLR 471
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
++ +T+ SL D ++DL LG + + D + + + +L S+DL + +TD GL
Sbjct: 297 LFKTKITDTSLVWLADSGIEDLGLG-FTAITDAGIPAL-TDFPALESLDLQKTSLTDKGL 354
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L + +NL+ L + +IS G+E L +L S N I G+ +L
Sbjct: 355 RFLSEATNLKQLQLDN-TEISHAGIEF---LLSLPLESLSLNPGIDNAGLNTLVRHNSLR 410
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKV 192
L + C + N + LMKLE L + I DS D+ PL L LK L + +
Sbjct: 411 NLAIWNC-----NVTNWQPLMKLELLEVL---LIDDSVTDLSPLRELDQLKYLLLWGDRF 462
Query: 193 TDSGIAYLKGLSISSV---IFILCSMII-RLFCL 222
+ + +A L+ LS+ F LCS ++ +CL
Sbjct: 463 SPTELARLR-LSLPQCQIRTFPLCSCVLSEFWCL 495
>gi|354478681|ref|XP_003501543.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit [Cricetulus griseus]
Length = 603
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 126/437 (28%), Positives = 190/437 (43%), Gaps = 29/437 (6%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F NL
Sbjct: 95 QNLSSLDF---LNLQGSWLNSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFTHTPNLAS 150
Query: 136 LDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + DM GL NL+ L ++ +K+
Sbjct: 151 LSLGNNLLGRLEDGL--FQGLGHLWDLNLGWNSLVVLPDMV-FQGLGNLRELVLAGNKLA 207
Query: 194 D------SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
G+ L+ L +S L S+ +F + L LQKL L + VTA
Sbjct: 208 YLQPSLFCGLGELRELDLSRNA--LRSVKANVF---IHLPRLQKLYL---DRNFVTAVAP 259
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
+ + +L +L+L+ +++ + F + L VL L N IT K L LE L
Sbjct: 260 GAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEEL 319
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
L I G GL L+ L L+D Q+ + SGL N+ +NLS + +
Sbjct: 320 QLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPE 379
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
R GLS L SL+L+ + L T L+GL L L G I+ + L L L
Sbjct: 380 RVFQGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLEL 439
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
++ LT + + L L L LS N L+ + +++S L + L++S++R+ +
Sbjct: 440 DLTANQLTHLPRRLFQGLGQLEYLLLSNN-RLSALSEDVLSPLQRVFWLDISHNRLEALS 498
Query: 488 LRHLKPLKNLRSLTLES 504
PL LR L+L +
Sbjct: 499 EGLFSPLGRLRYLSLRN 515
>gi|290991272|ref|XP_002678259.1| predicted protein [Naegleria gruberi]
gi|284091871|gb|EFC45515.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 170/352 (48%), Gaps = 6/352 (1%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+L LN+ W N + D D++ + L NL L++S ++++ + + ++ LS + + + +
Sbjct: 46 QLTELNVNW-NRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
I + +L KLT LN+ +T+ + + L +L L+++ + +G +
Sbjct: 105 IENEGINSII--NLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIG 162
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
++ +LK L NE+ + + L SL L IG+EG ++ L L L+L
Sbjct: 163 ELKNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGK 222
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++G G + L+ L L +++L ISD L L L L++ +I D G+ +
Sbjct: 223 NEIGDEGFKLLAKLEKLTNLDLVSNNISD--LSSTGQLGLLNCLDVRKNKIEDKGIRNIC 280
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L+GL L L IT GA L L +L I + D G K I L++L L++S
Sbjct: 281 QLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDIST 340
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+T ++ I L+ L+SL+++ + I G+ ++ ++ L +L C +
Sbjct: 341 K-RITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNI 391
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 180/380 (47%), Gaps = 19/380 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L L+ N+ ++ D +E + L NLT L N I+ MK + L L KL + +
Sbjct: 47 LTELNVNWN-RLKDEDVESIGNLKNLTLLELS-GNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ G+ ++ L KL LNI N IT +K + L+NL L IS + + G Y+
Sbjct: 105 IENEGINSIINLSKLTCLNIINAN-ITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGE 163
Query: 203 LSISSVIFILCSMIIRLFCLHVF----LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L L +++ L V + + +LT L L G + +S L L
Sbjct: 164 LKN------LKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTD 217
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L+L + ++ D+G + +K+ L L+L N I+D GL N L++ I D+G
Sbjct: 218 LDLGKNEIGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLN--CLDVRKNKIEDKG 275
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ N+ L L+ L L + S G + LS + L ++++S T I D + +A L++LK
Sbjct: 276 IRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKY 335
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTD 436
L++ ++IT G+ + L+ L LD+ I D G Y+ + L +L C GL
Sbjct: 336 LDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL-- 393
Query: 437 AGVKHIKDLSSLTLLNLSQN 456
G K + ++ LT+L++ N
Sbjct: 394 EGAKLLSEMEQLTVLDVKIN 413
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 144/294 (48%), Gaps = 10/294 (3%)
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
+ L+ ++ L +L G + D S L L LN+N +L D+ E + +L +
Sbjct: 19 KIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWNRLKDEDVESIGNLKNLTL 73
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L L NEI+ + + L+ L L++ I +EG+ ++ L L CL + + + S G
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIINLSKLTCLNIINANITSEG 133
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ + L+NL +++S I + + L +LK+L ++ G ++ + LT
Sbjct: 134 VKLIGKLSNLTILDISGNLIGAEGGQYIGELKNLKTLVASDNELGVLGAKSIGEMNQLTS 193
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L L G I + GA Y+ L L++ + D G K + L LT L+L N N++D
Sbjct: 194 LCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTNLDLVSN-NISDL 252
Query: 463 TLELISGLTGLVS-LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ +G GL++ L+V ++I G+R++ L L+SL L + +T+ K L
Sbjct: 253 S---STGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCANPITSEGAKIL 303
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 171/372 (45%), Gaps = 19/372 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM-----KPL 176
+G+K L NL LD I G L+ +G + L +D+++ K +
Sbjct: 132 EGVKLIGKLSNLTILD------ISGNLIGAEGGQYIGELKNLKTLVASDNELGVLGAKSI 185
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ L SL + + + + G Y+ LS ++ + + F L L L+KLT
Sbjct: 186 GEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIGDEGFKL---LAKLEKLT-- 240
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
NL+ + L S LG L L++ + ++ D G ++ L+ L L N IT E
Sbjct: 241 NLDLVSNNISDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQSLRLCANPITSEGA 300
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L + L +L++ I DEG + L LK L++S ++ ++G++ + L+ L S+
Sbjct: 301 KILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISL 360
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
++++ I D + ++ + L++LN I G L+ + LT LD+ RI G
Sbjct: 361 DINWNNIGDEGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGI 420
Query: 416 AYLRNFKNLRSL 427
L N +SL
Sbjct: 421 QLLENIARFKSL 432
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 104/254 (40%), Gaps = 31/254 (12%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ S L +DL +++ D G L L +LD ISD L L L L
Sbjct: 210 SQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTNLDL-VSNNISD--LSSTGQLGLLNCLDV 266
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R+ N I +G++ L L L L G L +++L +L+I + I D
Sbjct: 267 RK-NKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETH-IDDEGA 324
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K ++ LT LK L IS ++T +G+ F+ L KL
Sbjct: 325 KFIAQLTTLKYLDISTKRITANGVK--------------------------FICQLSKLI 358
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L++ + + +S + L LN C + +G + S++ L VL++ N I E
Sbjct: 359 SLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGE 418
Query: 294 CLVHLKGLTNLESL 307
+ L+ + +SL
Sbjct: 419 GIQLLENIARFKSL 432
>gi|345791735|ref|XP_543882.2| PREDICTED: F-box/LRR-repeat protein 14 [Canis lupus familiaris]
Length = 420
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 162/289 (56%), Gaps = 25/289 (8%)
Query: 250 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 305
+ +GSL LNL+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+
Sbjct: 113 VQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLK 172
Query: 306 SLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLES 354
SLNL SC + D G+ +L G+ L+ L L D Q + L+H+S GLT L
Sbjct: 173 SLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRL 232
Query: 355 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGAR 409
+NLSF G ISD L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F +
Sbjct: 233 LNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDK 291
Query: 410 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+ D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI
Sbjct: 292 VGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELI 351
Query: 468 S-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+ L+ L +++ +RIT GL + L L+ L L ++T ++ R
Sbjct: 352 AEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 165/327 (50%), Gaps = 38/327 (11%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 90 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +
Sbjct: 150 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT----------RSAAE 199
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALG 254
G L+ L++ C + L H+ L L LLNL C ++ A L LS +G
Sbjct: 200 GCLGLEQLTLQD-----CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHLSHMG 253
Query: 255 SLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNL 309
SL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L
Sbjct: 254 SLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSL 312
Query: 310 DSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
SC I D+G+ + GL L +C+ ++D + HLS LT ++ T I
Sbjct: 313 CSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC--TRI 369
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDT 389
+ L ++ L LK LNL Q+TD+
Sbjct: 370 TKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 335 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 367
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 368 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|430746592|ref|YP_007205721.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
gi|430018312|gb|AGA30026.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
Length = 830
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 111/202 (54%), Gaps = 15/202 (7%)
Query: 305 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGI 362
+ L +DS GI D GL +L L NL+ L + T ++ GL HL+ L L +NLS +G+
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-SGL 681
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
SD ++ +LA L LK L+LD + D+G+AAL +T LT L L ++TD+G + L+
Sbjct: 682 SDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMV 741
Query: 423 NLRSLE-----ICGGGLTDAGVKHIKDLSSLTLLNLSQ--NCNLTDKTLELISGLTGLVS 475
+ L + G GL A +K + L SL+ + ++Q LTD L + L L
Sbjct: 742 QMERLSLGNVSVRGPGL--ANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDF 799
Query: 476 LNVSNSRITSAGL---RHLKPL 494
LN+ + +T AG+ R +KPL
Sbjct: 800 LNLGETSVTDAGMAAARKIKPL 821
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 234 LLNLEG------CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L+NLEG + L L+ L L LNL+ LSD + + + LK L+L
Sbjct: 644 LVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-SGLSDKAVARLAPLKELKRLSLDH 702
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
++ D + LKG+T L L+LD + D GL L G+ ++ L L + V GL +L
Sbjct: 703 TDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLSLGNVSVRGPGLANLK 762
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
G++ L+S LSF ++ +TD GL L +L L L+L
Sbjct: 763 GMSRLKS--LSFVAVA----------------QYKPSPLTDAGLVHLENLPALDFLNLGE 804
Query: 408 ARITDSGAAYLRNFKNL 424
+TD+G A R K L
Sbjct: 805 TSVTDAGMAAARKIKPL 821
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 8/192 (4%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
+ D G E +++ +L+ L++ I L HL L L LNL S G+ D+ + L
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL-SSGLSDKAVARLAP 691
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L LK L L T + SG+ L G+T L ++L T ++D L L G+ ++ L+L
Sbjct: 692 LKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMVQMERLSLGNV 751
Query: 385 QITDTGLAALTSLTGLTHLDLFG------ARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
+ GLA L ++ L L + +TD+G +L N L L + +TDAG
Sbjct: 752 SVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTDAG 811
Query: 439 VKHIKDLSSLTL 450
+ + + L L
Sbjct: 812 MAAARKIKPLIL 823
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 23/212 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D+GL HL NL+ L + +I GL HL L LT L+ ++ ++ + + A
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVARLA 690
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L +L L+ G+ LKG+ L L++ +TD+ + L G+ ++ L +
Sbjct: 691 PLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETK-VTDAGLSALKGMVQMERLSLG 749
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
V G+A LKG+S L SL + + + P+T A L
Sbjct: 750 NVSVRGPGLANLKGMS--------------------RLKSLSFVAVAQYKPSPLTDAGLV 789
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
L L +L +LNL ++D G KI L
Sbjct: 790 HLENLPALDFLNLGETSVTDAGMAAARKIKPL 821
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 377 KSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGL 434
K L +D+ + I D GL L L L L + ARI G A+L L L + G L
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLSSG-L 681
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
+D V + L L L+L + +L D + + G+T L L++ +++T AGL LK +
Sbjct: 682 SDKAVARLAPLKELKRLSL-DHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGM 740
Query: 495 KNLRSLTLESCKVTA------NDIKRLQSRDLPNLVSFRP 528
+ L+L + V + RL+S + ++P
Sbjct: 741 VQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKP 780
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMI 216
+ L I I D+ ++ L+ L NL+ L I +++ G+A+L L + + + +
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLSSGLS 682
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
+ L L++L L+L+ + + + +L + +L L+L+ +++D G
Sbjct: 683 DKAVAR---LAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKG 739
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNL------DSCGIGDEGLVNLTGLCNLKC 330
+ ++ L+LG + L +LKG++ L+SL+ + D GLV+L L L
Sbjct: 740 MVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDF 799
Query: 331 LELSDTQVGSSGL 343
L L +T V +G+
Sbjct: 800 LNLGETSVTDAGM 812
>gi|395845616|ref|XP_003795523.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Otolemur
garnettii]
Length = 401
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 172/308 (55%), Gaps = 29/308 (9%)
Query: 235 LNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FN 288
LNL GC +T L + +GSL LNL+ C Q++D + ++ + L+VL LG +
Sbjct: 95 LNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCS 154
Query: 289 EITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ- 337
IT+ L+ + GL L+SLNL SC + D G+ +L G+ L+ L L D Q
Sbjct: 155 NITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK 214
Query: 338 VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA-- 392
+ L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL + I+DTG+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 393 ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLT 449
A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D G+ + ++ + L
Sbjct: 275 AMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLR 333
Query: 450 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 507
LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L L+ L L ++
Sbjct: 334 TLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQM 393
Query: 508 TANDIKRL 515
T ++ KRL
Sbjct: 394 TDSE-KRL 400
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 167/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT----------R 195
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
G L+ L++ C + L H+ L L LLNL C ++ A L L
Sbjct: 196 SAAEGCLGLEQLTLQD-----CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 335 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 367
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 368 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|413949465|gb|AFW82114.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
Length = 606
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/421 (26%), Positives = 180/421 (42%), Gaps = 85/421 (20%)
Query: 56 GSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G S+ VDLSG V L +L L+ L C I++ + L G++ L L
Sbjct: 71 GRSVEEVDLSGFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLS 130
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R I+ G+K + +L KL L G++ + L L L++ +TD ++
Sbjct: 131 RCKKISDAGIKHIVTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGI-LMTDKTLQ 189
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L LT L+ L I S+ T+ G + LK + RL L++ LT + L++
Sbjct: 190 SLQVLTKLEHLDIWGSETTNEGASALKSFA-------------RLLSLNLALTRVNHLSI 236
Query: 235 ------LNLEGCPVTAAC-------------LDSLSALG------------SLFYLNLNR 263
LN+ C + + C + S + G SL +L+L+
Sbjct: 237 PPTTSYLNMSNCEIHSICDVDSEVPVPLENFIVSAATFGNIDKVFSSIQASSLIHLDLSS 296
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL-TNLESLNLDSCGIGDEGLVNL 322
C+LS+ K+ +L+ L+L +N ITD + H+ + TNL+ L+L + GI + L L
Sbjct: 297 CKLSN--LSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTGITSQALCIL 354
Query: 323 TG-LCNLKCLELSDTQVGSSGLRHL----------------------------------- 346
G + NL L L++T++ S L ++
Sbjct: 355 AGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNSEKLLSMSAF 414
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
L LES+NL T +S + LA ++LK L L + ++D L AL++ + L HL
Sbjct: 415 EHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAASNLIHLGFR 474
Query: 407 G 407
G
Sbjct: 475 G 475
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 343
GF + E L +L L L L C I ++ + +L+G+ LK L+LS ++ +G+
Sbjct: 81 GFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGI 140
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+H+ + +LE ++LS T ++D + ++ L++L L+L +TD L +L LT L HL
Sbjct: 141 KHIVTIESLEKLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHL 200
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
D++G+ T+ GA+ L++F L SL + LT V H+ + + LN+S NC +
Sbjct: 201 DIWGSETTNEGASALKSFARLLSLNL---ALTR--VNHLSIPPTTSYLNMS-NCEI 250
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 156/330 (47%), Gaps = 31/330 (9%)
Query: 224 VFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLK 281
+L S + L +L L C + + SLS + +L L+L+RC+ +SD G + I SL+
Sbjct: 91 AYLGSFRYLRVLKLADCKNINNDAVWSLSGMNTLKELDLSRCKKISDAGIKHIVTIESLE 150
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L+L E+TD ++ + LTNL L+L + D+ L +L L L+ L++ ++ +
Sbjct: 151 KLHLSETELTDNGVMLISSLTNLSFLDLGGILMTDKTLQSLQVLTKLEHLDIWGSETTNE 210
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL---- 397
G L L S+NL+ T ++ S+ S L N + I D L
Sbjct: 211 GASALKSFARLLSLNLALTRVNHLSIPPTT--SYLNMSNCEIHSICDVDSEVPVPLENFI 268
Query: 398 ------------------TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
+ L HLDL ++ S ++L KNL L++ +TD +
Sbjct: 269 VSAATFGNIDKVFSSIQASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNIITDGAI 326
Query: 440 KHIKDL-SSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNL 497
+HI + ++L L+L +N +T + L +++G + L SL+++N++I + L ++ + L
Sbjct: 327 EHIAKIGTNLQYLSL-KNTGITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLL 385
Query: 498 RSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
R++ L + + S L ++ +F
Sbjct: 386 RTIDLSQTSIKGFIHTEVNSEKLLSMSAFE 415
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 66/244 (27%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSF 113
Q SSL+ +DLS + S L L+ NL+ LD ++ I I+DG +EH+ + +NL LS
Sbjct: 285 QASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNI-ITDGAIEHIAKIGTNLQYLSL 341
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ N IT+Q + AG +
Sbjct: 342 K-NTGITSQALCILAGTV------------------------------------------ 358
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI---------FILCSM-IIRLFCLH 223
NL SL ++ +K+ DS +AY+ + + I FI + +L +
Sbjct: 359 ------PNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNSEKLLSMS 412
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
F L+ L LNLE P++A + L++ +L YL L LSD S +L +
Sbjct: 413 AF-EHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAASNL--I 469
Query: 284 NLGF 287
+LGF
Sbjct: 470 HLGF 473
>gi|290983152|ref|XP_002674293.1| predicted protein [Naegleria gruberi]
gi|284087882|gb|EFC41549.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 108/204 (52%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
++ + L L+++ ++ D+G + S++ L L + N I DE + + + L SL +
Sbjct: 130 ITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
IGDEG +++ + L L++++ Q G G++ + + L S+ + I D +
Sbjct: 190 GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKS 249
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
++ + L SLN+ +I D G ++ L LT LD+ RI D A ++ K L+SL+I
Sbjct: 250 ISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDI 309
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNL 453
G + D GVK I +++ LT L++
Sbjct: 310 GGNQIGDEGVKFISEMTRLTSLDI 333
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 4/213 (1%)
Query: 269 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
D EK + I +K L ++ N I DE + + + L SL + + GIGDEG+ ++ +
Sbjct: 122 DSIEKPTFITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEM 181
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L + Q+G G + +S + L S++++ D ++ + + L SL + +
Sbjct: 182 KRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNR 241
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
I D G +++ + LT L++ RI D GA ++ K L SL+IC + D K I ++
Sbjct: 242 IGDEGAKSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEM 301
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
L L++ N + D+ ++ IS +T L SL++
Sbjct: 302 KQLKSLDIGGN-QIGDEGVKFISEMTRLTSLDI 333
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 119/249 (47%), Gaps = 28/249 (11%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
+N+K+ + DS KP ++ + L SL IS +++ D G+
Sbjct: 112 VNVKFSKRLFDSIEKPTFITEMKQLTSLDISNNRIGDEGVK------------------- 152
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
F++ +++L L + + + S+ + L L + Q+ D+G + S++
Sbjct: 153 -------FISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGIGGNQIGDEGAKSISEM 205
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
L L++ N+ DE + + + L SL + + IGDEG +++ + L L +S+ +
Sbjct: 206 KQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKSISEMKQLTSLNISENR 265
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
+G G +S L L S+++ + I D + + + LKSL++ QI D G+ ++ +
Sbjct: 266 IGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEM 325
Query: 398 TGLTHLDLF 406
T LT LD+F
Sbjct: 326 TRLTSLDIF 334
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 34 QDLCLGQYP-GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
Q + LG Y G+ D+ + I + L S+ + G+ + D G + + L SLD N
Sbjct: 159 QLISLGIYNNGIGDEGVKSII-EMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNN- 216
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q D G++ + + LTSL+ NN I +G K+ + + L L++ G + +
Sbjct: 217 QTGDEGVKFICEMKQLTSLTI-YNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFIS 275
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204
L +L SL+I + N I D + K + + LKSL I +++ D G+ ++ ++
Sbjct: 276 ELKQLTSLDICY-NRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMT 326
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 53/256 (20%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++ L S+D+S + + D G+ + + L SL + I D G++ + + LTSL
Sbjct: 131 TEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGI-YNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + + L LD+ G+ + + +L SL I + N I D
Sbjct: 190 -GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTI-YNNRIGDEGA 247
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S + L SL IS +++ D G +F++ L++LT
Sbjct: 248 KSISEMKQLTSLNISENRIGDEG--------------------------AIFISELKQLT 281
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L++ C + + + F CE + LK L++G N+I DE
Sbjct: 282 SLDI--------CYNRIGDKEAKFI------------CE----MKQLKSLDIGGNQIGDE 317
Query: 294 CLVHLKGLTNLESLNL 309
+ + +T L SL++
Sbjct: 318 GVKFISEMTRLTSLDI 333
>gi|406831323|ref|ZP_11090917.1| hypothetical protein SpalD1_06790 [Schlesneria paludicola DSM
18645]
Length = 539
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 22/266 (8%)
Query: 266 LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD-----SCGIGDEGL 319
L+D KFS + +L+ + G + T E L HL LTNLE L+ + +GD L
Sbjct: 173 LNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATL 232
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKS 378
+++ + +L+ L LS+ V GL+ L L NL +++ G ++D +L +A L LK
Sbjct: 233 RSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKV 292
Query: 379 LNLDAR--------QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
L L +++ L +LT L HLDL G ++ L NF L+SL I
Sbjct: 293 LTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTD----LLNFPRLKSLRIN 348
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
D K I LT L++S C+ +TD LE + L L L++ I+ +
Sbjct: 349 RNQFDDDLAKAIAKCRELTHLDVS--CSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIA 406
Query: 490 HLKPLKNLRSLTLESCKVTANDIKRL 515
HLK NL S+TL + ++T ++ L
Sbjct: 407 HLKLFPNLASVTLHTAELTDKSLEYL 432
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGIS----- 363
D + D+ L + L L+ ++ Q GL HLS LTNLE ++ SF+ S
Sbjct: 169 DYGVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELG 228
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFK 422
D +LR ++ + SL+ LNL +TD GL +L L LTHL ++ R+TD+ + + K
Sbjct: 229 DATLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLK 288
Query: 423 NLRSLEICGGGLTDAGVKHIKD--------LSSLTLLNLSQNCNLTD-------KTLEL- 466
+L+ L + T G H + L+ L L+LS + TD K+L +
Sbjct: 289 HLKVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSLRIN 348
Query: 467 -----------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
I+ L L+VS S +T L HL+PL +L L + + +++ N I L
Sbjct: 349 RNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHL 408
Query: 516 QSRDLPNLVS 525
+ PNL S
Sbjct: 409 KL--FPNLAS 416
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 136/304 (44%), Gaps = 38/304 (12%)
Query: 235 LNLEGCP-VTAACLDSLSALGSLFYLNLNRC-----QLSDDGCEKFSKIGSLKVLNLGFN 288
+ EG P T L LS L +L L+ + +L D S+I SL+ LNL
Sbjct: 190 IQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLSEC 249
Query: 289 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHL 346
+TDE L L+ L NL L++ G + D L + L +LK L L+ T VG+ G H
Sbjct: 250 GVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLT-THVGTPLGRMHF 308
Query: 347 S--------GLTNLESINLSFTGIS--------------------DGSLRKLAGLSSLKS 378
S LT LE ++LS +S D + +A L
Sbjct: 309 SESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSLRINRNQFDDDLAKAIAKCRELTH 368
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L++ ++TDT L L L LT L + I+D+ A+L+ F NL S+ + LTD
Sbjct: 369 LDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAELTDKS 428
Query: 439 VKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
++++ +SLT L+L+ N + LE ++ L L +L + GL+ ++ K
Sbjct: 429 LEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLELRIIPFQGGGLKLIRDAKEP 488
Query: 498 RSLT 501
LT
Sbjct: 489 EILT 492
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 35/354 (9%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
+++A ++ A Q L + + + + + +++S+ G + D L S L
Sbjct: 129 TMKAVKERAKQRLPKWIHEYFDSPKLRIFSDDDGNVVSLSDYGV-LNDKALAKFSVLSTL 187
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNL----TSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+ + F Q + GL HL L+NL S S + N + +++ + + +L +L+L
Sbjct: 188 RGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLS 247
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
C GL +L+ L L L+I +TD+ + ++ L +LK L ++ T G +
Sbjct: 248 ECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMH 307
Query: 200 LKGLSISSVIFILCSM----------------IIRLFCLHV----FLTSLQK-------L 232
S ++ + L + RL L + F L K L
Sbjct: 308 FSE-SATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSLRINRNQFDDDLAKAIAKCREL 366
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T L++ +T L+ L L SL L++ ++SD+ +L + L E+TD
Sbjct: 367 THLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAELTD 426
Query: 293 ECLVHLKGLTNLESLNLD--SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ L +L +L L+L+ + GL L L NL+ LEL GL+
Sbjct: 427 KSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLELRIIPFQGGGLK 480
>gi|410963525|ref|XP_003988315.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Felis catus]
Length = 411
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 73 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 132
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 133 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 192
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 193 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 252
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 253 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 311
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 312 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 371
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 372 PCLKVLNLGLWQMTDSEKVR 391
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 166/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 136
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 137 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 192
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 193 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 240
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 241 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 299
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 300 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 357
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 358 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 387
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 135
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 136 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 191
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 192 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 250
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 251 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 310
Query: 510 NDIKRL 515
+ I R+
Sbjct: 311 DGINRM 316
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 206 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 265
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 266 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 325
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 326 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 358
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 359 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 386
>gi|301756605|ref|XP_002914145.1| PREDICTED: f-box/LRR-repeat protein 14-like [Ailuropoda
melanoleuca]
Length = 420
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 166/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 201
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 202 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 335 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 367
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 368 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|345310405|ref|XP_001520129.2| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Ornithorhynchus anatinus]
Length = 604
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 121/437 (27%), Positives = 188/437 (43%), Gaps = 21/437 (4%)
Query: 82 NLQSLDFNFCIQISD-GGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
NL LDF +Q S G LE RGL+ L L RN + F NL L L
Sbjct: 93 NLSGLDF-LNLQGSRLGQLEAQAFRGLARLAHLHLERNQ-LRGLAPGTFLHTPNLASLSL 150
Query: 139 E--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
R ++ G GL +L LN+ W D GL +L+ L ++ ++
Sbjct: 151 ANNRLGQLEG--AAFAGLCQLGELNLGWNTLAVLPDAV-FRGLPHLRELVLAGNR----- 202
Query: 197 IAYLKGLSISSVIFI----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSA 252
+AYL+ + + + L + +R HVF L +L L L G ++A +
Sbjct: 203 LAYLQPPLFAGLGELQELDLSTNSLRSVKAHVF-AGLPRLQKLFLRGNQLSAVAPRAFLG 261
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
L +L +L+L+ +L+ + F + SL VL L N IT + L +LE L L
Sbjct: 262 LRALRWLDLSHNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEELQLAHN 321
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
+G GL L+ L L+D + G +GL L +NLS ++ + G
Sbjct: 322 RLGALAAGAFEGLARLEVLALNDNHIREIGPGAFAGLARLAVVNLSGNCLAALPAQTFRG 381
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
L++L SL+L+ + A L L L L IT L + L L++ G
Sbjct: 382 LAALHSLHLERACLGRVPAGAFAGLVALRRLSLGHNGITAIEEQGLHDLTGLLELDLTGN 441
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
LT + +DL+ L L L+ N L D E + L L L+++++R+ +
Sbjct: 442 RLTHLPTRAFRDLARLEYLLLAGN-QLADLAPEALLPLRRLSWLDLAHNRLGAVAAGLFA 500
Query: 493 PLKNLRSLTLESCKVTA 509
PL +LR L+L + + A
Sbjct: 501 PLASLRFLSLRNNSLRA 517
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 100/277 (36%), Gaps = 25/277 (9%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L L+G +TA + L L +LNL +L + F + L L+L N++
Sbjct: 76 LWLDGNNLTALPAAAFGNLSGLDFLNLQGSRLGQLEAQAFRGLARLAHLHLERNQLRGLA 135
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS------SGLRHL-- 346
NL SL+L + +G GLC L L L + GL HL
Sbjct: 136 PGTFLHTPNLASLSLANNRLGQLEGAAFAGLCQLGELNLGWNTLAVLPDAVFRGLPHLRE 195
Query: 347 ----------------SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
+GL L+ ++LS + AGL L+ L L Q++
Sbjct: 196 LVLAGNRLAYLQPPLFAGLGELQELDLSTNSLRSVKAHVFAGLPRLQKLFLRGNQLSAVA 255
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
A L L LDL R+ +L L + +T + +DL L
Sbjct: 256 PRAFLGLRALRWLDLSHNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEE 315
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
L L+ N L GL L L ++++ I G
Sbjct: 316 LQLAHN-RLGALAAGAFEGLARLEVLALNDNHIREIG 351
>gi|126340111|ref|XP_001366661.1| PREDICTED: f-box/LRR-repeat protein 14-like [Monodelphis domestica]
Length = 400
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTESEKVR 400
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 167/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT----------R 195
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
G L+ L++ C + L H+ L L LLNL C ++ A L L
Sbjct: 196 SAAEGCLGLEQLTLQD-----CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+T++
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTES 396
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 157/304 (51%), Gaps = 24/304 (7%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H +++ +L++L+ + C QI+D L + + L L L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 153
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL L L+L C + G+ +L G+ + LE L ++ C
Sbjct: 154 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 213
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLH 223
+TD +K +S GLT L+ L +S C ++D+G+ +L + S+ S+ C I +H
Sbjct: 214 KLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMH 273
Query: 224 VFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSL 280
+ + SL +L+ L++ C V L ++ L L L+L C +SDDG + ++ L
Sbjct: 274 LAMGSL-RLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGL 332
Query: 281 KVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ 337
+ LN+G ITD+ L + + L+ L ++L C I GL +T L LK L L Q
Sbjct: 333 RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQ 392
Query: 338 VGSS 341
+ S
Sbjct: 393 MTES 396
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFR 114
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL G L+ L
Sbjct: 229 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVS 287
Query: 115 RNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSD 172
+ + Q + A GL L L L C G+ + + + L +LNI C ITD
Sbjct: 288 FCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKG 347
Query: 173 MKPLS-GLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVI 209
++ ++ L+ L + + C+++T G+ + L V+
Sbjct: 348 LELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVL 386
>gi|46447197|ref|YP_008562.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400838|emb|CAF24287.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 380
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 13/232 (5%)
Query: 273 KFSKI---GSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGL 325
KF KI S ++ L F+E +TD L+ LK NL+ L+L C + D GL +L L
Sbjct: 149 KFEKILNHFSNEIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASL 208
Query: 326 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA 383
L+ L L+ ++ +GL HL+ L L+ ++L+ ++D L L L +L+ L+L+
Sbjct: 209 VALQHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNG 268
Query: 384 -RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 440
+T GLA L L L HL+L + ++TD+G A+L+ L L + G LTDAG+
Sbjct: 269 CPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLV 328
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 491
H+ L +L L+L+ NLTD L + L L LN+ +T AGL H+
Sbjct: 329 HLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 109/210 (51%), Gaps = 7/210 (3%)
Query: 304 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FT 360
+E LN + + D L+ L NLK L L D + +GL HL+ L L+ +NL+
Sbjct: 161 IEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCR 220
Query: 361 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 418
++D L L L L+ L+L +TD GLA LT L L HLDL G +T G A+L
Sbjct: 221 KLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHL 280
Query: 419 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
+ L+ L + LTDAG+ H+K L +L LNL+ LTD L + L L L+
Sbjct: 281 KPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLD 340
Query: 478 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
++ S +T GL HLKPL L+ L L C
Sbjct: 341 LTACSNLTDVGLAHLKPLVALQHLNLGWCP 370
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 5/176 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL LQ L+ C +++D GL HL L L LS + +T G+
Sbjct: 197 LTDAGLAHLASLVALQHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + G GL +LK L+ L+ LN+ WC+ +TD+ + L L L L +
Sbjct: 257 PLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNL 316
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
+ C K+TD+G+ +L L ++ + CS + + H L L L LNL CP
Sbjct: 317 AGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAH--LKPLVALQHLNLGWCP 370
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 343 LRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 400
L H S +E +N S ++D L L +LK L+L D +TD GLA L SL L
Sbjct: 154 LNHFSN--EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVAL 211
Query: 401 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 458
HL+L G R +TD+G A+L L+ L + G LTDAG+ H+ L +L L+L+ N
Sbjct: 212 QHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPN 271
Query: 459 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
LT L + L L LN+S ++T AGL HLKPL L L L C
Sbjct: 272 LTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 10/223 (4%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL-SISSVIFILC 213
++E LN +TD+ + L NLK L + C +TD+G+A+L L ++ + C
Sbjct: 160 EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGC 219
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 271
+ H LT L L L+L GC +T A L L+ L +L +L+LN C L+ G
Sbjct: 220 RKLTDAGLAH--LTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGL 277
Query: 272 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 329
+ +L+ LNL + +++TD L HLK L L LNL C + D GLV+L L L+
Sbjct: 278 AHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQ 337
Query: 330 CLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 370
L+L+ + + GL HL L L+ +NL + ++D L +
Sbjct: 338 HLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 64 LSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
L+G D +TD+GL HL LQ LD N C ++ GL HL+ L L L+ + +T
Sbjct: 241 LAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDA 300
Query: 123 GMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ L+ L L+L C ++ GLV+L L+ L+ L++ C+ +TD + L L
Sbjct: 301 GLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVA 360
Query: 182 LKSLQIS-CSKVTDSGIAYL 200
L+ L + C +TD+G+A++
Sbjct: 361 LQHLNLGWCPNLTDAGLAHI 380
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++T GL HLK LQ L+ ++C +++D GL HL+ L L L+
Sbjct: 260 ALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDS 171
+ +T G+ L+ L LDL C+ + GL +LK L+ L+ LN+ WC +TD+
Sbjct: 320 DKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDA 375
>gi|302753328|ref|XP_002960088.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
gi|300171027|gb|EFJ37627.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
Length = 657
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 139/501 (27%), Positives = 227/501 (45%), Gaps = 61/501 (12%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVK---------------------------LDLERCTRIH 145
++IT G+ A ++K LDL
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKLLTLKGCLGITDIGIALVAVNCKQLRTLDLSYTEVTD 218
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-- 201
GL ++ L LE LN+ CN + D ++ L +L L +S CS V+D+G+A L
Sbjct: 219 EGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRSLLKLDVSRCSNVSDAGLAALATS 278
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN---LEGCPVTAACLDSLS-ALGSLF 257
LS+ + CS+I L + QK L L+GC + L ++ L
Sbjct: 279 HLSLEQLTLSYCSIIT-----DDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQLK 333
Query: 258 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG 313
L+L++C+ ++D G ++ +L LNL E+TD L + K LESL ++SC
Sbjct: 334 ELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKMESCS 393
Query: 314 -IGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 370
I ++GL L G L+ L+ ++ + +GL+++S T L S+ L F + I+D + +
Sbjct: 394 LITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCSTITDKGVAHI 453
Query: 371 -AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRS 426
A +L+ L+ ++ I D G+AA+ S L LDL + ++ITD L + L+
Sbjct: 454 GARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQSLSQLRELQR 513
Query: 427 LEICGGGLTDAG-----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
LE+ G L + K L+ + + SQ N L GL +N+S
Sbjct: 514 LELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFC--PGLRMMNISYC 571
Query: 482 RITSAGLRHLKPLKNLRSLTL 502
I+ AGL L L L+S+ L
Sbjct: 572 PISKAGLLSLPRLSCLQSVRL 592
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 198/435 (45%), Gaps = 42/435 (9%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 -RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLV-NLKGLMKLES 159
R +L L R + ++ G+ A A ++L +L L C+ I L+ + L+S
Sbjct: 250 KRSCRSLLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQS 309
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLSISSVIFILCSMII 217
+ + C + G LK L +S C VTD GIA + +G + + + C +
Sbjct: 310 IVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCREL 369
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 273
L + L L +E C + D L LG L L+ C +SD G +
Sbjct: 370 TDASLCRISKDCKGLESLKMESCSLITE--DGLCGLGEGCPRLEELDFTECNMSDTGLKY 427
Query: 274 FSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNL-DSCGIGDEGLVNLTGLCNLKC 330
SK +L+ L LGF + ITD+ + H+ NL L+ S GIGD G+ +
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIA------- 480
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 388
SG L+ ++LS+ + I+D SL+ L+ L L+ L L ++
Sbjct: 481 ----------------SGCPKLKLLDLSYCSKITDCSLQSLSQLRELQRLELRGCVLVSS 524
Query: 389 TGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDL 445
TGLA + S LT +D+ ++I ++G + L F LR + I ++ AG+ + L
Sbjct: 525 TGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFCPGLRMMNISYCPISKAGLLSLPRL 584
Query: 446 SSLTLLNLSQNCNLT 460
S L + L N+T
Sbjct: 585 SCLQSVRLVHLKNVT 599
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R C L++L + G+ D + IAS C L+ LD
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
++C +I+D L+ L L L L R +++ G+ A G L ++D++RC++I +
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRLELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G+ L L +NI +C I+ + + L L+ L+S++ + +LK +++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISKAGLLSLPRLSCLQSVR----------LVHLKNVTV 600
Query: 206 SSVIFIL 212
+ +L
Sbjct: 601 DCFVTVL 607
>gi|374850803|dbj|BAL53782.1| hypothetical conserved protein, partial [uncultured planctomycete]
Length = 351
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 26/269 (9%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ L+ L L L V L L+ LGSL L+L + G + +I +L+VL L
Sbjct: 108 IAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGTGLKHVGQIRNLRVLLL 167
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+I DE + + LT LE L+L + D+G+ ++ L NLK L ++ + +
Sbjct: 168 THTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDLRCPES-LTDDATKL 226
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+ L L ++ LS + ++ + L LS L+SL+L +I D L +T L+ L HL L
Sbjct: 227 LARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQITVLSKLEHLLL 286
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
ITD+ A + F NL+SL + G ++D+ ++ + + +L LNLS+
Sbjct: 287 SETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLSKTA-------- 338
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPL 494
+T GL+HL PL
Sbjct: 339 -----------------VTGEGLQHLTPL 350
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 2/203 (0%)
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
SL+L + +G + L L+ L L+D+ V L++L+ L +LE+++L++T +
Sbjct: 92 SLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGT 151
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ + + +L+ L L +I D +A + LT L LDL G +TD G ++ NL+
Sbjct: 152 GLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLK 211
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L C LTD K + L L L LS +C +T + +E + L+ L SL++S ++I
Sbjct: 212 DLR-CPESLTDDATKLLARLVQLRTLCLSSSC-VTSQGVESLKTLSELRSLDLSRTKIDD 269
Query: 486 AGLRHLKPLKNLRSLTLESCKVT 508
L + L L L L +T
Sbjct: 270 RALDQITVLSKLEHLLLSETNIT 292
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 2/226 (0%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+L +T + + L L L L + DE L L L +L+ L+L+ T + +G
Sbjct: 93 LDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGTG 152
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
L+H+ + NL + L+ T I+D + ++ L+ L+ L+L +TD G+ ++ L L
Sbjct: 153 LKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKD 212
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L + +TD L LR+L + +T GV+ +K LS L L+LS+ + D+
Sbjct: 213 LRCPES-LTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRT-KIDDR 270
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L+ I+ L+ L L +S + IT A + NL+SL L+ K++
Sbjct: 271 ALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKIS 316
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 132/281 (46%), Gaps = 32/281 (11%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T QG + A L L +L L L L L LE+L++ W + + +K +
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAW-TPMKGTGLKHVGQ 158
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+ NL+ L ++ +K+ D IA + V LT L+KL +L
Sbjct: 159 IRNLRVLLLTHTKIADEHIAQI-----------------------VPLTKLEKL---DLG 192
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
G VT ++ +S L +L L RC L+DD + +++ L+ L L + +T + +
Sbjct: 193 GTLVTDKGMEFVSRLANLKDL---RCPESLTDDATKLLARLVQLRTLCLSSSCVTSQGVE 249
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
LK L+ L SL+L I D L +T L L+ L LS+T + + + NL+S+
Sbjct: 250 SLKTLSELRSLDLSRTKIDDRALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLF 309
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
L T ISD L+++ + +L+ LNL +T GL LT L
Sbjct: 310 LDGTKISDSVLQEVGKVHTLERLNLSKTAVTGEGLQHLTPL 350
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 3/251 (1%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+T + ++ L L+ L ++ S V D + YL L + + + + HV
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGTGLKHV--G 157
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
++ L +L L + + + L L L+L ++D G E S++ +LK L
Sbjct: 158 QIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDLRCP- 216
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+TD+ L L L +L L S + +G+ +L L L+ L+LS T++ L ++
Sbjct: 217 ESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQIT 276
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L+ LE + LS T I+D + +LKSL LD +I+D+ L + + L L+L
Sbjct: 277 VLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLSK 336
Query: 408 ARITDSGAAYL 418
+T G +L
Sbjct: 337 TAVTGEGLQHL 347
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 125/304 (41%), Gaps = 61/304 (20%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSN 82
L A R+ L D V+D+ + +A+ GS L ++DL+ + + +GL H+ N
Sbjct: 109 AELRALRELYLAD------SNVDDEDLQYLANLGS-LETLDLAWTPMKGTGLKHVGQIRN 161
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ L +I+D + + L+ L L +T +GM+ + L NL L RC
Sbjct: 162 LRVLLLTHT-KIADEHIAQIVPLTKLEKLDL-GGTLVTDKGMEFVSRLANLKDL---RCP 216
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
ESL TD K L+ L L++L +S S VT G+ LK
Sbjct: 217 ---------------ESL--------TDDATKLLARLVQLRTLCLSSSCVTSQGVESLKT 253
Query: 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
LS +L L+L + LD ++ L L +L L+
Sbjct: 254 LS--------------------------ELRSLDLSRTKIDDRALDQITVLSKLEHLLLS 287
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
++D + +LK L L +I+D L + + LE LNL + EGL +L
Sbjct: 288 ETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLSKTAVTGEGLQHL 347
Query: 323 TGLC 326
T L
Sbjct: 348 TPLA 351
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
SL++ LT G + I +L +L L L+ + N+ D+ L+ ++ L L +L+++ + +
Sbjct: 92 SLDLSHARLTPQGWRKIAELRALRELYLA-DSNVDDEDLQYLANLGSLETLDLAWTPMKG 150
Query: 486 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
GL+H+ ++NLR L L K+ I ++
Sbjct: 151 TGLKHVGQIRNLRVLLLTHTKIADEHIAQI 180
>gi|300694035|ref|YP_003750008.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299076072|emb|CBJ35382.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum PSI07]
Length = 590
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 124/452 (27%), Positives = 194/452 (42%), Gaps = 34/452 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ T L SL S + + +G+ L + + + + C+ I
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTSI------------------- 275
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+L+ +L LN+ +L D G + +L LN+ NEI E
Sbjct: 276 -------DEESAQALARNTTLTSLNVRLSRLGDAGARALAATTTLTSLNVSLNEIGPEGA 328
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L T+L SL++ +G +G L L L + ++ +G + L+ T L S+
Sbjct: 329 KALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHRNRIEVAGAQALANNTRLTSL 388
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
++S G+ R +L SL + I D G L T LT LD+ RI ++GA
Sbjct: 389 DISDNGLGVWGARAFVDNETLTSLRIATNMIGDEGAKWLARNTTLTSLDIGENRIGETGA 448
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
L L SL I G + GV + ++L LN+S+N +L T L S
Sbjct: 449 QALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAALNVSRNQIGVAGAQDLARNTT-LRS 507
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L V+ + I + G R L K L SL++ C++
Sbjct: 508 LVVNYNEIGNEGARALAGNKTLASLSVVDCRI 539
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 167/380 (43%), Gaps = 45/380 (11%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN- 116
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASANG 250
Query: 117 ----------------------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 153
+I + +A A L L++ R +R+ G L
Sbjct: 251 IGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNV-RLSRLGDAGARALAA 309
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L SLN+ N I K L+ T+L SL I +KV G+ + L+ S L
Sbjct: 310 TTTLTSLNVS-LNEIGPEGAKALANNTSLTSLDIGGNKV---GVDGAQALATS---MTLT 362
Query: 214 SMIIRLFCLHVF----LTSLQKLTLLNLE----GCPVTAACLDSLSALGSLFYLNLNRCQ 265
S++I + V L + +LT L++ G A +D+ +L L +
Sbjct: 363 SLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDN----ETLTSLRIATNM 418
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ D+G + ++ +L L++G N I + L G T L SLN+ IG G++ L
Sbjct: 419 IGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARN 478
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L +S Q+G +G + L+ T L S+ +++ I + R LAG +L SL++ +
Sbjct: 479 TTLAALNVSRNQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLASLSVVDCR 538
Query: 386 ITDTGLAALTSLTGLTHLDL 405
I D G AL + T L LD+
Sbjct: 539 IGDEGAHALAANTTLALLDV 558
>gi|18204097|gb|AAH21329.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
Length = 400
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 167/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT----------R 195
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
G L+ L++ C + L H+ L L LLNL C ++ A L L
Sbjct: 196 SAAEGCLGLEQLTLQD-----CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 335 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 367
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 368 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|115495249|ref|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus]
gi|225543352|ref|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus]
gi|404312677|ref|NP_001258205.1| F-box/LRR-repeat protein 14 [Rattus norvegicus]
gi|296211085|ref|XP_002752262.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Callithrix
jacchus]
gi|332249161|ref|XP_003273733.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Nomascus
leucogenys]
gi|348555895|ref|XP_003463758.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cavia porcellus]
gi|395845614|ref|XP_003795522.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Otolemur
garnettii]
gi|48428059|sp|Q8BID8.1|FXL14_MOUSE RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|122144674|sp|Q17R01.1|FXL14_BOVIN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|26351129|dbj|BAC39201.1| unnamed protein product [Mus musculus]
gi|74196388|dbj|BAE33081.1| unnamed protein product [Mus musculus]
gi|109659305|gb|AAI18094.1| F-box and leucine-rich repeat protein 14 [Bos taurus]
gi|119609336|gb|EAW88930.1| F-box and leucine-rich repeat protein 14, isoform CRA_c [Homo
sapiens]
gi|148667199|gb|EDK99615.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
gi|149049602|gb|EDM02056.1| rCG29594 [Rattus norvegicus]
gi|296487055|tpg|DAA29168.1| TPA: F-box/LRR-repeat protein 14 [Bos taurus]
Length = 400
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 166/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 201
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 202 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 335 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 367
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 368 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|428317664|ref|YP_007115546.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428241344|gb|AFZ07130.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 782
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 184/370 (49%), Gaps = 42/370 (11%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204
H + N L L +L + +D+ LS LTNL L + +++TD I L L+
Sbjct: 62 HRSITNFTSLSALTNLTALYLQGSQINDIASLSALTNLTYLNLESNQITD--ITPLSALT 119
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
+ + + + I + L+ L LT+L+LE +T + LSAL +L L L
Sbjct: 120 NLTYLNLNHNQITDI----TPLSGLTNLTILSLEYNQITD--ITGLSALTNLTDLCL--- 170
Query: 265 QLSDDGCEKFSKI------GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
GC + + I +L ++L NEITD + L LTNL L +++ I D
Sbjct: 171 -----GCNQITDITGLLGLTNLTRVSLNNNEITD--VTPLSALTNLTKLGIENQEITD-- 221
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ L+ L NL L +SD G + LS LTNL + +S GI+D + L+ L++L
Sbjct: 222 ISPLSALTNLTELSISD---GIIDISPLSALTNLTELFIS-EGITD--ISPLSALTNLTK 275
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L++ T T ++ L++LT LT L +ITD A L NL L + +TD
Sbjct: 276 LSIIYND-TITEISPLSALTNLTSLYFLYTQITDITA--LSALTNLTYLYLSDNQITD-- 330
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
+ + L++LT LNLS N +TD + +S LT L LN+SN++IT + L L NL
Sbjct: 331 ITALSALTNLTYLNLSNN-QITD--IAALSALTNLTYLNLSNNQIT--DITALSALTNLT 385
Query: 499 SLTLESCKVT 508
L LE+ ++T
Sbjct: 386 ELHLETNQIT 395
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 167/346 (48%), Gaps = 52/346 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L + +TD + L +NL L+ N QI+D + L GL+NLT LS N
Sbjct: 97 TNLTYLNLESNQITD--ITPLSALTNLTYLNLNHN-QITD--ITPLSGLTNLTILSLEYN 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK 174
G+ A L +L L + T I G GL NL + SLN N ITD +
Sbjct: 152 QITDITGLSALTNLTDLC-LGCNQITDITGLLGLTNLTRV----SLN---NNEITD--VT 201
Query: 175 PLSGLTNLKSLQISCSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
PLS LTNL L I ++TD S + L LSIS I + L++L
Sbjct: 202 PLSALTNLTKLGIENQEITDISPLSALTNLTELSISDGIIDISP-----------LSALT 250
Query: 231 KLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLG 286
LT L + EG + LSAL +L L++ + +D + S + + L L
Sbjct: 251 NLTELFISEGI----TDISPLSALTNLTKLSI----IYNDTITEISPLSALTNLTSLYFL 302
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
+ +ITD + L LTNL L L I D + L+ L NL L LS+ Q+ + + L
Sbjct: 303 YTQITD--ITALSALTNLTYLYLSDNQITD--ITALSALTNLTYLNLSNNQI--TDIAAL 356
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
S LTNL +NLS I+D + L+ L++L L+L+ QITD L+
Sbjct: 357 SALTNLTYLNLSNNQITD--ITALSALTNLTELHLETNQITDLNLS 400
>gi|320169501|gb|EFW46400.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1286
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 174/395 (44%), Gaps = 9/395 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
+++D GLS L+ L F NN +++ AFAGL L +L L R T I L
Sbjct: 120 RLTDISANAFTGLSALSQL-FLNNNRLSSVPAGAFAGLPALKQLQLNSNRITSISATL-- 176
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
GL L L +++ N IT + LT L L + + +T GL+ S I
Sbjct: 177 FTGLTALTWLRLEF-NQITSIPASVFTDLTGLSVLVLRSNNITSIPPYAFTGLTALSQID 235
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+ ++I + L T L+L +T+ + + L +L +LN++ +L+
Sbjct: 236 VSINLITSIPAFA--FAGLTAATYLDLYINQITSISDSAFTGLTALTFLNMDNNRLTSIL 293
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
F+ + +L+ L L N++T GLT L SL L I L L
Sbjct: 294 STTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQITSIPANAFDDLSVLNT 353
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L+D + S + LT+L+ ++L I+ + L++L SL+L +IT+
Sbjct: 354 LSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRITNIP 413
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
A SL+ LT L L+ IT A + + + + ++ ++SL L
Sbjct: 414 STAFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKL 473
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L LS N +T + SGLT L L++ +RITS
Sbjct: 474 LYLSGN-QITSVSANAFSGLTALTQLSLYLNRITS 507
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 174/395 (44%), Gaps = 8/395 (2%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT AF GL ++ L L R T I GL L L + N ++
Sbjct: 95 NQITYIPADAFTGLTAVISLQLNNNRLTDISANA--FTGLSALSQLFLN-NNRLSSVPAG 151
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+GL LK LQ++ +++T GL+ + + + + I + VF T L L++
Sbjct: 152 AFAGLPALKQLQLNSNRITSISATLFTGLTALTWLRLEFNQITSI-PASVF-TDLTGLSV 209
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L L +T+ + + L +L ++++ ++ F+ + + L+L N+IT
Sbjct: 210 LVLRSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYINQITSIS 269
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
GLT L LN+D+ + GL L+ L L QV S +GLT L S
Sbjct: 270 DSAFTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNS 329
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ L I+ LS L +L+L+ IT +A +LT L +L LF RIT
Sbjct: 330 LQLYDNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIA 389
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
A + L SL + +T+ LS+LT L+L N ++T + S L+ +
Sbjct: 390 ANAFDDLTALGSLHLHTNRITNIPSTAFASLSALTQLHLYNN-SITSISAGTFSSLSAVT 448
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+ + +++I+S + +L+ L L ++T+
Sbjct: 449 YMYMYDNQISSIPANTFTGMTSLKLLYLSGNQITS 483
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 160/405 (39%), Gaps = 52/405 (12%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ N T+ + NN IT+ AF GL L L +++G
Sbjct: 58 GIPNTTTQLYLNNNQITSIPTSAFPGLTVLQIL------QVYG----------------- 94
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
N IT +GLT + SLQ++ +++TD GLS
Sbjct: 95 --NQITYIPADAFTGLTAVISLQLNNNRLTDISANAFTGLS------------------- 133
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+L +L L N V A L AL L LN +++ F+ + +L L
Sbjct: 134 ----ALSQLFLNNNRLSSVPAGAFAGLPALKQ---LQLNSNRITSISATLFTGLTALTWL 186
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
L FN+IT LT L L L S I TGL L +++S + S
Sbjct: 187 RLEFNQITSIPASVFTDLTGLSVLVLRSNNITSIPPYAFTGLTALSQIDVSINLITSIPA 246
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+GLT ++L I+ S GL++L LN+D ++T LT L +L
Sbjct: 247 FAFAGLTAATYLDLYINQITSISDSAFTGLTALTFLNMDNNRLTSILSTTFAGLTALQYL 306
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
L+ ++T L SL++ +T DLS L L+L+ N +T
Sbjct: 307 YLWSNQVTSIAPNTFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLSLNDNL-ITSVP 365
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ LT L L++ N+RITS L L SL L + ++T
Sbjct: 366 ASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRIT 410
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 141/302 (46%), Gaps = 9/302 (2%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT+ AF GL L L+++ R T I GL L+ L + W N +T
Sbjct: 263 NQITSISDSAFTGLTALTFLNMDNNRLTSILS--TTFAGLTALQYLYL-WSNQVTSIAPN 319
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC-LHVFLTSLQKLT 233
+GLT L SLQ+ +++T LS+ + + + ++I + LTSLQ L+
Sbjct: 320 TFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLS 379
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L N + A D L+ALGSL +L+ NR +++ F+ + +L L+L N IT
Sbjct: 380 LFNNRITSIAANAFDDLTALGSL-HLHTNR--ITNIPSTAFASLSALTQLHLYNNSITSI 436
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L+ + + + I TG+ +LK L LS Q+ S SGLT L
Sbjct: 437 SAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLLYLSGNQITSVSANAFSGLTALT 496
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
++L I+ S GL++L +L+L QI+ +A T LT L L L+ +IT
Sbjct: 497 QLSLYLNRITSISAAAFPGLTALLTLSLSDNQISSIPSSAFTDLTLLKFLYLYNNQITSI 556
Query: 414 GA 415
A
Sbjct: 557 AA 558
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 117/281 (41%), Gaps = 1/281 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L L +L + G +T D+ + L ++ L LN +L+D F+ + +L L L N
Sbjct: 84 LTVLQILQVYGNQITYIPADAFTGLTAVISLQLNNNRLTDISANAFTGLSALSQLFLNNN 143
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
++ GL L+ L L+S I TGL L L L Q+ S +
Sbjct: 144 RLSSVPAGAFAGLPALKQLQLNSNRITSISATLFTGLTALTWLRLEFNQITSIPASVFTD 203
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
LT L + L I+ GL++L +++ IT A LT T+LDL+
Sbjct: 204 LTGLSVLVLRSNNITSIPPYAFTGLTALSQIDVSINLITSIPAFAFAGLTAATYLDLYIN 263
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+IT + L L + LT L++L L L N +T +
Sbjct: 264 QITSISDSAFTGLTALTFLNMDNNRLTSILSTTFAGLTALQYLYLWSN-QVTSIAPNTFA 322
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
GLT L SL + +++ITS L L +L+L +T+
Sbjct: 323 GLTALNSLQLYDNQITSIPANAFDDLSVLNTLSLNDNLITS 363
>gi|22748931|ref|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens]
gi|386782025|ref|NP_001247451.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|390467358|ref|XP_003733751.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Callithrix
jacchus]
gi|402884767|ref|XP_003905846.1| PREDICTED: F-box/LRR-repeat protein 14 [Papio anubis]
gi|441670511|ref|XP_004092204.1| PREDICTED: F-box/LRR-repeat protein 14 [Nomascus leucogenys]
gi|48428083|sp|Q8N1E6.1|FXL14_HUMAN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|20381419|gb|AAH28132.1| F-box and leucine-rich repeat protein 14 [Homo sapiens]
gi|119609334|gb|EAW88928.1| F-box and leucine-rich repeat protein 14, isoform CRA_a [Homo
sapiens]
gi|312150528|gb|ADQ31776.1| F-box and leucine-rich repeat protein 14 [synthetic construct]
gi|355563880|gb|EHH20380.1| F-box and leucine-rich repeat protein 14 [Macaca mulatta]
gi|384945426|gb|AFI36318.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|410217776|gb|JAA06107.1| F-box and leucine-rich repeat protein 14 [Pan troglodytes]
Length = 418
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 178/335 (53%), Gaps = 30/335 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
L+ L L ++T D ++ D L + R
Sbjct: 381 PCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 413
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 166/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 201
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 202 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 335 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 367
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 368 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|344278047|ref|XP_003410808.1| PREDICTED: F-box/LRR-repeat protein 14 [Loxodonta africana]
Length = 514
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 177/326 (54%), Gaps = 30/326 (9%)
Query: 222 LHVFLTSLQKLTLLNLEGC-PVTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF GISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKRLQSRDL 520
L+ L L ++T D ++ SR+
Sbjct: 381 PCLKVLNLGLWQMT--DSEKTSSREF 404
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 167/335 (49%), Gaps = 46/335 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINL 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A L L
Sbjct: 86 IQGMANIESLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 201
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 202 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLES 354
SL+L SC I D+G+ + GL L +C+ ++D GL HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDL 363
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 364 YGC--TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 155/301 (51%), Gaps = 24/301 (7%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG +TD+GL H +++ +L++L+ + C QI+D L + + L L L
Sbjct: 94 SLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 153
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL L L+L C + G+ +L G+ + LE L ++ C
Sbjct: 154 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 213
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLH 223
+TD +K +S GLT L+ L +S C ++D+G+ +L + S+ S+ C I +H
Sbjct: 214 KLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMH 273
Query: 224 VFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSL 280
+ + SL +L+ L++ C V L ++ L L L+L C +SDDG + ++ L
Sbjct: 274 LAMGSL-RLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGL 332
Query: 281 KVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ 337
+ LN+G ITD+ L + + L+ L ++L C I GL +T L LK L L Q
Sbjct: 333 RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQ 392
Query: 338 V 338
+
Sbjct: 393 M 393
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 57/231 (24%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
A G + L LD+ C ++ G +L +GL L+SL++ C+ D + + + L
Sbjct: 275 AMGSLRLSGLDVSFCDKV--GDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGL 332
Query: 183 KSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
++L I C ++TD G L + L +LT ++L GC
Sbjct: 333 RTLNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGC- 366
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 367 ----------------------TRITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|290994276|ref|XP_002679758.1| predicted protein [Naegleria gruberi]
gi|284093376|gb|EFC47014.1| predicted protein [Naegleria gruberi]
Length = 205
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 1/201 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ GDE ++ + L L++S ++G G ++LS + L S+N+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I D + ++ L SLN+ QI ++ + LT L++ RI GA ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
+ L SL+I G + D G K I ++ LT L++S N + D+ + IS + L+SLN+
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYN-RIGDEGAKFISEMKQLISLNIRG 179
Query: 481 SRITSAGLRHLKPLKNLRSLT 501
+RI G++++ +K L SLT
Sbjct: 180 NRIGDEGVKYISEMKQLTSLT 200
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 100/199 (50%)
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
+ L LN++ + D+ + S++ L L++ N I DE +L + L SLN+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
IGDEG ++ L L + TQ+G + +S + L S+N+S I + ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
+ L SL++ +I D G ++ + LT LD+ RI D GA ++ K L SL I G
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 433 GLTDAGVKHIKDLSSLTLL 451
+ D GVK+I ++ LT L
Sbjct: 181 RIGDEGVKYISEMKQLTSL 199
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 91/183 (49%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
++ +++LT L++ G + LS + L LN+ ++ D+G + S+ L LN
Sbjct: 21 LISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGENEIGDEGAKLISETRQLASLN 80
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ F +I E + + L SLN+ I EG ++ + L L++S ++G G +
Sbjct: 81 ICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAK 140
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + L S+++S+ I D + ++ + L SLN+ +I D G+ ++ + LT L
Sbjct: 141 TISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSLT 200
Query: 405 LFG 407
G
Sbjct: 201 YKG 203
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
+ L SLN+ + D ++ + LT LD+ G RI D GA YL K L SL I
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
+ D G K I + L LN+ C + + +LIS + L SLN+S++RI G +
Sbjct: 61 EIGDEGAKLISETRQLASLNI---CFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKW 117
Query: 491 LKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 521
+ ++ L SL + ++ T +++K+L S D+
Sbjct: 118 ISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDIS 154
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 27/226 (11%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLNI N D + K +S + L SL IS +++ D G Y
Sbjct: 1 MKQLISLNIS-GNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKY-------------- 45
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
L+ +++L LN+ + +S L LN+ Q+ + +
Sbjct: 46 ------------LSEMKQLISLNIGENEIGDEGAKLISETRQLASLNICFTQIGIEEAKL 93
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S++ L LN+ N I E + + L SL++ IGDEG ++ + L L++
Sbjct: 94 ISEMRQLTSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDI 153
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
S ++G G + +S + L S+N+ I D ++ ++ + L SL
Sbjct: 154 SYNRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF----------------------NFC 91
S+ L S+D+SG+ + D G +L + L SL+ N C
Sbjct: 23 SEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGENEIGDEGAKLISETRQLASLNIC 82
Query: 92 I-QISDGGLEHLRGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
QI G+E + +S LTSL+ +N I +G K + + L LD+ G
Sbjct: 83 FTQI---GIEEAKLISEMRQLTSLNI-SDNRICVEGAKWISEMRQLTSLDISGNRIGDEG 138
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
+ + +L SL+I + N I D K +S + L SL I +++ D G+ Y+
Sbjct: 139 AKTISEMKQLTSLDISY-NRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYI 190
>gi|332249163|ref|XP_003273734.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Nomascus
leucogenys]
gi|119609335|gb|EAW88929.1| F-box and leucine-rich repeat protein 14, isoform CRA_b [Homo
sapiens]
Length = 401
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 173/317 (54%), Gaps = 28/317 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTAND 511
L+ L L ++T ++
Sbjct: 381 PCLKVLNLGLWQMTDSE 397
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 166/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 201
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 202 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 335 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 367
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 368 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|374586212|ref|ZP_09659304.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
gi|373875073|gb|EHQ07067.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
Length = 346
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 26/267 (9%)
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
+D + + L+ L+LG TD LVHL G +L+ LNL + I D GL ++ +
Sbjct: 62 TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L+ L+L++T++ +G+ L GL+ L+ ++L T ++D + + + SL+ L L+ I
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAY------------------------LRNFK 422
TD G+ L L L L G +TD Y LR K
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAK 241
Query: 423 NLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
NLR L + + D ++ ++ L +L+L + +T KT+E I+ + L V +
Sbjct: 242 NLRRLWLADTSVDDDDLIELLQPPMELDMLHLG-HLKITGKTMEAIARCNCVKDLYVGYT 300
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVT 508
+I + L L P L+S+T+ +VT
Sbjct: 301 KIGNDDLLKLIPATRLKSITVTKTRVT 327
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 151/338 (44%), Gaps = 35/338 (10%)
Query: 79 DCSNLQSLD-FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
D + +++++ + + Q+ + +R + + +L T M + L KL
Sbjct: 26 DWAKVRAIEQYVYTGQLKGVTMAEIRAVKDWYAL------GATDAEMPRLLSMQRLEKLS 79
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L LV+L G L+ LN+ ITD+ +K + + L+ L ++ +K+TD+G+
Sbjct: 80 LGGQNYTDAALVHLAGFKHLKELNLS-TGPITDAGLKSIGQIKTLEKLDLAETKITDAGV 138
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
A L GLS L+ L+L++ VT AC+ S+ + SL
Sbjct: 139 ADLVGLS-----------------------RLKDLSLID---TAVTDACMTSIMQMKSLE 172
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L LN ++D G E+ + L+ L LG +TDE + ++ + NL+ I +
Sbjct: 173 ILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGK 232
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSL 376
GLV L NL+ L L+DT V L L L+ ++L I+ ++ +A + +
Sbjct: 233 GLVRLRQAKNLRRLWLADTSVDDDDLIELLQPPMELDMLHLGHLKITGKTMEAIARCNCV 292
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
K L + +I + L L T L + + R+TD G
Sbjct: 293 KDLYVGYTKIGNDDLLKLIPATRLKSITVTKTRVTDDG 330
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 4/219 (1%)
Query: 297 HLKGLTNLESLNLD---SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
LKG+T E + + G D + L + L+ L L + L HL+G +L+
Sbjct: 41 QLKGVTMAEIRAVKDWYALGATDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLK 100
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+NLS I+D L+ + + +L+ L+L +ITD G+A L L+ L L L +TD+
Sbjct: 101 ELNLSTGPITDAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDA 160
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ K+L L++ G+TD GV+ + L L L +TD+++ ++ + L
Sbjct: 161 CMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKLILG-GTAVTDESVGYVAQIANL 219
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
S ++I GL L+ KNLR L L V +D+
Sbjct: 220 DEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDL 258
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 157/366 (42%), Gaps = 65/366 (17%)
Query: 3 PRDISQ-QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP-GVNDKWMDVIASQGSSLL 60
P D ++ + + VY+ L V++ R A++D Y G D M + S L
Sbjct: 24 PADWAKVRAIEQYVYTGQLKGVTMAEIR--AVKDW----YALGATDAEMPRLLSM-QRLE 76
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L G + TD+ L+HL G +HL+ L NL++ IT
Sbjct: 77 KLSLGGQNYTDAALVHL-------------------AGFKHLKEL-NLST------GPIT 110
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+K+ + L KLDL G+ +L GL +L+ L++ +TD+ M + +
Sbjct: 111 DAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSL-IDTAVTDACMTSIMQMK 169
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
+L+ LQ++ + +TD G+ L Q+L L L G
Sbjct: 170 SLEILQLNMTGITDRGVEQ--------------------------LIQHQRLRKLILGGT 203
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LK 299
VT + ++ + +L +R ++ G + + +L+ L L + D+ L+ L+
Sbjct: 204 AVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDLIELLQ 263
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
L+ L+L I + + + CN +K L + T++G+ L L T L+SI ++
Sbjct: 264 PPMELDMLHLGHLKITGKTMEAI-ARCNCVKDLYVGYTKIGNDDLLKLIPATRLKSITVT 322
Query: 359 FTGISD 364
T ++D
Sbjct: 323 KTRVTD 328
>gi|384253405|gb|EIE26880.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 641
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 207/493 (41%), Gaps = 88/493 (17%)
Query: 55 QGSSLLSVDLSGSDVTDSG---------LIHLKDCSNLQSLD-FNFCIQISDGGLEHLRG 104
+G++L +DLSG D+T L L+ + Q L ++ C Q+ D E L
Sbjct: 57 RGTTLRKLDLSGCDLTMPAGTLLDLLWNLTQLEHLAIAQQLPKYDACFQVDDELCEALGR 116
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI- 162
+ LT L R+ + IT +G+ AGL L L L C + ++ +L L+I
Sbjct: 117 MRGLTHLDLRQPSPITGRGLDRLAGLERLRTLRLGPCAGLLDSSFQSIACHTQLTELDIC 176
Query: 163 -----KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
+ C + + L+ L NL SLQ L G S +
Sbjct: 177 FGEKGRTCTSLPAEVLAQLATLPNLVSLQ-------------LAGFDTSRT-----EDLP 218
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
L CL LT L L+ + P A + SL L LN+C + D S+
Sbjct: 219 SLHCLST-LTHL-GLSQVTNSRSPGGVATFLRCMPIQSLIRLELNQCNIGIDVFPLISQA 276
Query: 278 GSLKVLNL-GFNEITDECLVHLKGLTNLESLNLD---------------------SCGIG 315
+L+ L++ + + L H+ GL+ LESL LD SC
Sbjct: 277 TTLRALSVTQCSPVYGLDLHHMSGLSRLESLTLDHSHPLSSNWSFLQHLTRLTQFSCAAH 336
Query: 316 DEGLV-----NLTGLC-------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
+ L N+ GL +L+ L+L +G L ++ LT L +++S G
Sbjct: 337 KDALPMSSDHNIAGLLENAIARKDLQRLDLRGHLLGKE-LGDIAALTALTELDISAAGCD 395
Query: 364 DGS-----------LRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARIT 411
S L +LAGLS L+ LNL + + GL + S L L HLDL G+ +
Sbjct: 396 VASHPSIACVFNLGLAQLAGLSRLQRLNLACTAVDEEGLRGICSGLRELLHLDLSGSAVE 455
Query: 412 DSGAAYLRNFKNLRSLEICGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
D+ A+L L+SL I ++DAG+ + +S+L L + N +T L+ +
Sbjct: 456 DADLAHLTKLPRLQSLRINNQPALDDISDAGLAEVSRVSALRCLEVKGNQCITAAGLKHL 515
Query: 468 SGLTGLVSLNVSN 480
S LTGL L+VS+
Sbjct: 516 SALTGLSDLDVSD 528
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN---FCIQISDGGL 99
V+++ + I S LL +DLSGS V D+ L HL LQSL N ISD GL
Sbjct: 428 AVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRINNQPALDDISDAGL 487
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKL 157
+ +S L L + N ITA G+K + L L LD+ C+ I+ L +L+G L
Sbjct: 488 AEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSDCSAINPKRALNSLQGCTAL 547
Query: 158 ESL 160
L
Sbjct: 548 RML 550
>gi|302804592|ref|XP_002984048.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
gi|300148400|gb|EFJ15060.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
Length = 657
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 126/465 (27%), Positives = 214/465 (46%), Gaps = 32/465 (6%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 -RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLV-NLKGLMKLES 159
R +L L R + ++ G+ A A ++L +L L C+ I L+ + L+S
Sbjct: 250 KRSCRSLLKLDVSRCSNVSDAGLAALATSHLSLEQLTLSYCSIITDDLLATFQKFDHLQS 309
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLSISSVIFILCSMII 217
+ + C + G LK L +S C VTD GIA + +G + + + C +
Sbjct: 310 IVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCREL 369
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 273
L + L L +E C + D L LG L L+ C +SD G +
Sbjct: 370 TDASLCRISKDCKGLESLKMESCSLITE--DGLCGLGEGCPRLEELDFTECNMSDTGLKY 427
Query: 274 FSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNL-DSCGIGDEGLVNLTGLC-NLK 329
SK +L+ L LGF + ITD+ + H+ NL L+ S GIGD G+ + C LK
Sbjct: 428 ISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDFYRSKGIGDAGVAAIASGCPKLK 487
Query: 330 CLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI--SDGSLRKLAGLSSLKSLNLD-ARQ 385
L+LS +++ L+ LS L L+ + L + S G +G L +++ Q
Sbjct: 488 LLDLSYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQ 547
Query: 386 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
I + G++AL+ GL +++ I+++G L L+S+ + H+K+
Sbjct: 548 IGNAGVSALSFFCPGLRMMNISYCPISNAGLLSLPRLSCLQSVRL----------VHLKN 597
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
++ + + QNC + K ++L S L L+ ++ + S G R
Sbjct: 598 VTVDCFVTVLQNCK-SLKNVKLPSYLRTLLPPGIAEE-MESRGCR 640
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 228/501 (45%), Gaps = 61/501 (12%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVK---------------------------LDLERCTRIH 145
++IT G+ A ++K LDL
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKLLTLKGCLGITDIGIALVAVNCKQLRTLDLSYTEVTD 218
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-- 201
GL ++ L LE LN+ CN + D ++ L +L L +S CS V+D+G+A L
Sbjct: 219 EGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRSLLKLDVSRCSNVSDAGLAALATS 278
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN---LEGCPVTAACLDSLS-ALGSLF 257
LS+ + CS+I L + QK L L+GC + L ++ L
Sbjct: 279 HLSLEQLTLSYCSIIT-----DDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQLK 333
Query: 258 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG 313
L+L++C+ ++D G ++ +L LNL E+TD L + K LESL ++SC
Sbjct: 334 ELSLSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKMESCS 393
Query: 314 -IGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 370
I ++GL L G L+ L+ ++ + +GL+++S T L S+ L F + I+D + +
Sbjct: 394 LITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCSTITDKGVAHI 453
Query: 371 -AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRS 426
A +L+ L+ ++ I D G+AA+ S L LDL + ++ITD L + L+
Sbjct: 454 GARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQSLSQLRELQR 513
Query: 427 LEICGGGLTDAG-----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
+E+ G L + K L+ + + SQ N L GL +N+S
Sbjct: 514 VELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFC--PGLRMMNISYC 571
Query: 482 RITSAGLRHLKPLKNLRSLTL 502
I++AGL L L L+S+ L
Sbjct: 572 PISNAGLLSLPRLSCLQSVRL 592
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 38/187 (20%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R C L++L + G+ D + IAS C L+ LD
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
++C +I+D L+ L L L + R +++ G+ A G L ++D++RC++I +
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G+ L L +NI +C I+++ + L L+ L+S++ + +LK +++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISNAGLLSLPRLSCLQSVR----------LVHLKNVTV 600
Query: 206 SSVIFIL 212
+ +L
Sbjct: 601 DCFVTVL 607
>gi|281349609|gb|EFB25193.1| hypothetical protein PANDA_001999 [Ailuropoda melanoleuca]
Length = 398
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 173/317 (54%), Gaps = 28/317 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTAND 511
L+ L L ++T ++
Sbjct: 381 PCLKVLNLGLWQMTDSE 397
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 166/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 201
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 202 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 367 -TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 335 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 367
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 368 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 395
>gi|261331843|emb|CBH14837.1| leucine-rich repeat protein (LRRP, pseudogene),putative [Trypanosoma
brucei gambiense DAL972]
Length = 1517
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 152/564 (26%), Positives = 228/564 (40%), Gaps = 107/564 (18%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 624 ALNELNLSDCFEINAGWEALEKLQ--QLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC 681
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L L+L C++I GL L
Sbjct: 682 DKLLD-----VTALSNITTLE----------------------DLNLSNCSKIRKGLSVL 714
Query: 152 KGLMKLESLNIKWC----------------------NCITDSDMKPLSGLTNLKSLQIS- 188
L +L LN+K NC D+KPLS L L+ L +
Sbjct: 715 GELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGDVKPLSNLVTLEELNLHY 774
Query: 189 CSKVTDSGIAYLKGLSISSVIFI------------LCSMIIRLFCLHV----------FL 226
C KVT SG+ L L V+ + +C+ I L L++ +
Sbjct: 775 CDKVT-SGMGTLGSLPQLRVLDLGRTQADNNSLENICTSSIPLVLLNLSHCKKITSISTI 833
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
SL L LN++ C + + L L L+ +++D+ S+ SL LNL
Sbjct: 834 ASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLA 893
Query: 287 F-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
F +ITD + L +T LE LNLD C +G+ L L + L + + + + +
Sbjct: 894 FCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMETDMRNN 951
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGL----------------SSLKSLNLDARQITDT 389
+ L + +N S+ S G+ K G+ SL LNL+ R +
Sbjct: 952 VPSLGIVSHLN-SWKA-SQGTYPKHEGMLHGDGYAQQCSILGNSKSLVKLNLE-RSMGFI 1008
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLS 446
+ AL+++ L L L A+ + +F L L + TD K+I +
Sbjct: 1009 SVKALSNIATLEELVLDHAQ----EVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESK 1064
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
SL LNLS +TD + ++S L+ L LN+S G L L LR L K
Sbjct: 1065 SLRSLNLSHCKWVTD--ISVLSSLSTLEELNISECEQIRKGWESLGKLPLLRVAILSDTK 1122
Query: 507 VTANDIKRLQS-RDLPNLVSFRPE 529
+TA DI L S + L L FR E
Sbjct: 1123 ITAKDIVCLSSCKTLVKLKFFRCE 1146
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 137/516 (26%), Positives = 217/516 (42%), Gaps = 71/516 (13%)
Query: 37 CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
CL + +N K+ D+ S+ SL S++LS VTD + L S L+ L+ +
Sbjct: 1038 CLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISV--LSSLSTLEELNIS 1095
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C QI G E L L L ++ + ITA+ + + LVKL RC + V
Sbjct: 1096 ECEQIRKG-WESLGKLP-LLRVAILSDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVTV 1153
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-------VTDSGIAYL-- 200
K + LE L +K C+ +K L+ L L+ S V G +L
Sbjct: 1154 VYK-IQSLEELIVKNCS----DGLKGLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLL 1208
Query: 201 ---KGLSISSVIFILCSMIIRL-------FCLHVFLTSLQKLTLLNLEGCPVTAACLDSL 250
+G IS ++RL L+ + L L+L C + +L
Sbjct: 1209 RNVRGSDISVESIGTSKSLVRLTIEVGEDLTDTTPLSDITSLEELSLRECGDNLGGVGTL 1268
Query: 251 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNL 309
L L L+L +S+ S+ LNL N E+TD + H+ LT LE LNL
Sbjct: 1269 EKLPRLKSLDLGLSDISNSTLNDICLSRSITSLNLSNNYELTD--ISHISNLTALEELNL 1326
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLR 368
C G L+ L L+ L L +V + ++S +L ++N+ + ++D S
Sbjct: 1327 RGCYHITSGWEALSELPRLRVLNLESARVTTRYDGYYISRCKSLVTLNIQLSDMTDASY- 1385
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+A + +L+ L++ G +AL +L L LDLF +RITD LRN + ++E
Sbjct: 1386 -IANIKTLEELHIGECDELRWGFSALFTLPRLRILDLFMSRITDED---LRNIQPPHTIE 1441
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT----LELISGLTGLVSLNVSNSRIT 484
LNLS NL D T ++ I L L+S + R+
Sbjct: 1442 ---------------------ELNLSYCENLNDITPLGRIKSIKNLHFLLSYDA--RRLR 1478
Query: 485 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 520
G R L L L + +++ V+++ ++ L+ R L
Sbjct: 1479 EEGFRSLLELPCLSWVGVKNAYVSSDILRELRKRRL 1514
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 109/433 (25%), Positives = 180/433 (41%), Gaps = 71/433 (16%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L++L++E T GL N++ L + LE L++ CN I D+ + L LK L +S
Sbjct: 531 LLQLNMESIT----GLSNVEALANILTLEKLSLLGCNGI-DAVIGCLGNPPQLKMLDLSG 585
Query: 190 SKVTDSGIAYLKGLSISSVIFIL----CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
T++ L+ L +S + L C + + ++SL+ L LNL C A
Sbjct: 586 ---TNTDNESLRSLCLSQTMVSLNLSHCWKMTNM----SHISSLEALNELNLSDCFEINA 638
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNL 304
++L L L L+ ++D FSK +L L+L F +++ D + L +T L
Sbjct: 639 GWEALEKLQQLHVAILSNTHITDGDISHFSKCKNLVTLDLSFCDKLLD--VTALSNITTL 696
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLE-----LSDTQVGSSG----------------- 342
E LNL +C +GL L L L+ L L D+ +GS G
Sbjct: 697 EDLNLSNCSKIRKGLSVLGELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFG 756
Query: 343 -LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------------- 388
++ LS L LE +NL + + L L L+ L+L Q +
Sbjct: 757 DVKPLSNLVTLEELNLHYCDKVTSGMGTLGSLPQLRVLDLGRTQADNNSLENICTSSIPL 816
Query: 389 -----------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
T ++ + SLT L L++ SG LR + + D
Sbjct: 817 VLLNLSHCKKITSISTIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDE 876
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
++++ + SL LNL+ ++TD T +S +T L LN+ G+ L L
Sbjct: 877 NIRYVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCHNIRKGIETLGKLPKA 934
Query: 498 RSLTLESCKVTAN 510
R L+++ C + +
Sbjct: 935 RILSMKECYMETD 947
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 128/529 (24%), Positives = 204/529 (38%), Gaps = 122/529 (23%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + ++ +C +L +L+ FC I+D
Sbjct: 868 LSNTRINDENIRYVSECKSLNTLNLAFCKDITD--------------------------- 900
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTN 181
+ A + + L +L+L+ C I G+ L L K L++K C TD +++ L +++
Sbjct: 901 VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMETDMRNNVPSLGIVSH 960
Query: 182 LKSLQIS-------------------CSKVTDS---------------------GIAYLK 201
L S + S CS + +S IA L+
Sbjct: 961 LNSWKASQGTYPKHEGMLHGDGYAQQCSILGNSKSLVKLNLERSMGFISVKALSNIATLE 1020
Query: 202 GLSISSVIFILC----SMIIRLFCLHVFLTSL-----------QKLTLLNLEGCPVTAAC 246
L + + C S + RL L++ T + + L LNL C
Sbjct: 1021 ELVLDHAQEVCCIPSFSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTD- 1079
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
+ LS+L +L LN++ C+ G E K+ L+V L +IT + +V L L
Sbjct: 1080 ISVLSSLSTLEELNISECEQIRKGWESLGKLPLLRVAILSDTKITAKDIVCLSSCKTLVK 1139
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI---- 362
L C E L ++T + ++ LE + S GL+ L+ L + +
Sbjct: 1140 LKFFRC----EELSDVTVVYKIQSLEELIVKNCSDGLKGLNAPGTLPRLRFFASAKCERM 1195
Query: 363 ------------------SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 403
SD S+ + SL L ++ +TDT L+ +T L L
Sbjct: 1196 LLVHSHGCVFLLLRNVRGSDISVESIGTSKSLVRLTIEVGEDLTDT--TPLSDITSLEEL 1253
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLT 460
L G L L+SL++ GL+D + D+ S+T LNLS N LT
Sbjct: 1254 SLRECGDNLGGVGTLEKLPRLKSLDL---GLSDISNSTLNDICLSRSITSLNLSNNYELT 1310
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
D + IS LT L LN+ ++G L L LR L LES +VT
Sbjct: 1311 D--ISHISNLTALEELNLRGCYHITSGWEALSELPRLRVLNLESARVTT 1357
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 134/543 (24%), Positives = 221/543 (40%), Gaps = 107/543 (19%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG+ V D+ L L DC +L+ L+ ++CIQ++D E L RG+
Sbjct: 353 LDLSGAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGM 412
Query: 106 SNLTSLS-----FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L ++ ++ + + LVK+ L+ C G + L ++ LE L
Sbjct: 413 GVVWVLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGF-GDMTLLSSIVTLEEL 471
Query: 161 NIK----------------------WCNC-----------ITDSDMKPL--SGLTNLKS- 184
NI+ WC I ++ + L +G+ KS
Sbjct: 472 NIQKCVDIISGVGCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSL 531
Query: 185 LQISCSKVTD-SGIAYLKG-LSISSVIFILCSMIIRLF-CLHVFLTSLQKLTLLNLEGCP 241
LQ++ +T S + L L++ + + C+ I + C L + +L +L+L G
Sbjct: 532 LQLNMESITGLSNVEALANILTLEKLSLLGCNGIDAVIGC----LGNPPQLKMLDLSGTN 587
Query: 242 VTAACLDSLSALGSLFYLNLNRC------------------QLSD-----DGCEKFSKIG 278
L SL ++ LNL+ C LSD G E K+
Sbjct: 588 TDNESLRSLCLSQTMVSLNLSHCWKMTNMSHISSLEALNELNLSDCFEINAGWEALEKLQ 647
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSD 335
L V L ITD + H NL +L+L C + L+++T L N+ LE LS+
Sbjct: 648 QLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC----DKLLDVTALSNITTLEDLNLSN 703
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAAL 394
GL L L L +N+ + D + L S L+L+ + D + L
Sbjct: 704 CSKIRKGLSVLGELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGD--VKPL 761
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS----LTL 450
++L L L+L SG L + LR L++ G T A ++++ + L L
Sbjct: 762 SNLVTLEELNLHYCDKVTSGMGTLGSLPQLRVLDL---GRTQADNNSLENICTSSIPLVL 818
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
LNLS +T ++ I+ LT L LN+ N ++G L LR TL + ++
Sbjct: 819 LNLSHCKKIT--SISTIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDE 876
Query: 511 DIK 513
+I+
Sbjct: 877 NIR 879
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 122/487 (25%), Positives = 212/487 (43%), Gaps = 71/487 (14%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++L+ +D+ DS + + C L L + C I D + L+ L L+
Sbjct: 274 SRLTNLKCLELNSTDIDDSCVRRICACVKLFKLSVSECNNIMDAT--PISQLAALEELNL 331
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
IT +G+ L+ L LDL L +L LE LN+ +C I +D+
Sbjct: 332 NSCYHIT-KGIGTLGMLLRLRVLDLSGAPVEDNFLKDLCDCGSLERLNLSYC--IQLTDI 388
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM-IIRLFCLHVFLTSLQK 231
PLS + L ++ C ++T +G+ V+++L + ++ + +H+ SL
Sbjct: 389 NPLSNAAATEELNLNGCRRIT-------RGM---GVVWVLPKLRVLHMKDMHLSEPSLDS 438
Query: 232 LTLLNLEGCPVTAACLDS---------LSALGSLFYLNLNRCQ--LSDDGCEKFSKIGSL 280
+ G P+ LD+ LS++ +L LN+ +C +S GC +G+L
Sbjct: 439 VG----TGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCVDIISGVGC-----LGTL 489
Query: 281 ------------------KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
+VLN+ I+ + +L LN++S GL N+
Sbjct: 490 PYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSLLQLNMESIT----GLSNV 545
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSG----LTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L N+ LE + +G +G+ + G L+ ++LS T + SLR L ++ S
Sbjct: 546 EALANILTLE-KLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNESLRSLCLSQTMVS 604
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
LNL + T ++ ++SL L L+L ++G L + L + +TD
Sbjct: 605 LNL-SHCWKMTNMSHISSLEALNELNLSDCFEINAGWEALEKLQQLHVAILSNTHITDGD 663
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLEL--ISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
+ H +L L+LS DK L++ +S +T L LN+SN GL L L
Sbjct: 664 ISHFSKCKNLVTLDLS----FCDKLLDVTALSNITTLEDLNLSNCSKIRKGLSVLGELPR 719
Query: 497 LRSLTLE 503
LR L ++
Sbjct: 720 LRVLNVK 726
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 14/221 (6%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQ 230
D++ +S L L+ L+I + + LK L + ++++ + + H+F + +L+
Sbjct: 198 DLERVSKLKQLEELRIEYPRGKPVNMISLKRLHMLKMLYLKSNNVDNNGARHLFNIGTLE 257
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE- 289
+L + + + A + +S L +L L LN + DD C + +K+ L +E
Sbjct: 258 ELVIAD----TMQLANIRGISRLTNLKCLELNSTDI-DDSCVR-RICACVKLFKLSVSEC 311
Query: 290 --ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
I D + L LE LNL+SC +G+ L L L+ L+LS V + L+ L
Sbjct: 312 NNIMDA--TPISQLAALEELNLNSCYHITKGIGTLGMLLRLRVLDLSGAPVEDNFLKDLC 369
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQIT 387
+LE +NLS+ I + L+ ++ + LNL+ R+IT
Sbjct: 370 DCGSLERLNLSYC-IQLTDINPLSNAAATEELNLNGCRRIT 409
>gi|209154162|gb|ACI33313.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 403
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 180/363 (49%), Gaps = 72/363 (19%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+ G+ N++SL + C +TD+G+ H F+ + L +
Sbjct: 89 IQGMPNIESLNLCGCFNLTDNGLG------------------------HAFVQDIPSLRI 124
Query: 235 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITD 292
LNL C P+T + L ++ YL +L+VL LG + IT+
Sbjct: 125 LNLSLCKPITDSSLGRIAQ-----YLK------------------NLEVLELGGLSNITN 161
Query: 293 ECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSS 341
L+ + GL L+SLNL SC + D G+ +L G+ L+ L L D Q +
Sbjct: 162 TGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLFLEQLTLQDCQKLTDL 221
Query: 342 GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTS 396
L+H+S GL NL+ +NLSF G ISD + L+ ++ L SLNL + I+DTG+ A+ S
Sbjct: 222 SLKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGS 281
Query: 397 LTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNL 453
L L+ LD+ F +I D AY+ + L+SL +C ++D G+ + ++ + L LN+
Sbjct: 282 LQ-LSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNI 340
Query: 454 SQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
Q +TDK LELI+ LT L +++ ++IT GL + L L+ L L ++T ++
Sbjct: 341 GQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESE 400
Query: 512 IKR 514
R
Sbjct: 401 KVR 403
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 169/354 (47%), Gaps = 56/354 (15%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKL 157
H RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 69 HTRGIKKVQILSLRRSLSYVIQGMP------NIESLNLCGCFNLTDNGLGHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
LN+ C ITDS + ++ L NL+ L++ S +T++G+ +
Sbjct: 123 RILNLSLCKPITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIA-------------- 168
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSLF--YLNLNRCQ- 265
L KL LNL C + A + +A G LF L L CQ
Sbjct: 169 -----------WGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLFLEQLTLQDCQK 217
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
L+D + SK + +LKVLNL F I+D ++HL +T+L SLNL SC I D G+++L
Sbjct: 218 LTDLSLKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHL 277
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKS 378
G L L++S ++G L +++ GL L+S++L ISD + R + + LK+
Sbjct: 278 AMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 379 LNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
LN+ +ITD GL + LT LT +DL+G +IT G + L+ L +
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 391
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 135/266 (50%), Gaps = 17/266 (6%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 133 ITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGH 192
Query: 102 LRGLSN--------LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
L G++ L L+ + +T +K + GL NL L+L C I G+++L
Sbjct: 193 LAGMTRSAAEGCLFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGGISDSGMIHL 252
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVI 209
+ L SLN++ C+ I+D+ + L+ G L L +S C K+ D +AY+
Sbjct: 253 SNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKS 312
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QL 266
LCS I ++ + + +L LN+ C +T L+ ++ L L ++L C ++
Sbjct: 313 LSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKI 372
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITD 292
+ G E+ +++ LKVLNLG ++T+
Sbjct: 373 TKRGLERITQLPCLKVLNLGLWQMTE 398
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + ++ L L C ++D+ +G R
Sbjct: 89 IQGMPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLG----RIAQY 144
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTG------ 399
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 204
Query: 400 --LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L L L ++TD ++ + NL+ +L CGG ++D+G+ H+ +++ L LNL
Sbjct: 205 LFLEQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGG-ISDSGMIHLSNMTHLWSLNL 263
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 511 DIKRL 515
I R+
Sbjct: 324 GINRM 328
>gi|148228501|ref|NP_001083845.1| F-box and leucine-rich repeat protein 14 [Xenopus laevis]
gi|50603939|gb|AAH77430.1| Fbl13 protein [Xenopus laevis]
Length = 400
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 172/320 (53%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + L + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLC------- 326
+ L+VL LG IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 327 -NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
+L+ L L D Q + L+H+S GL L +NLSF G ISD L L+ + L+SLNL
Sbjct: 202 LSLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTESEKVR 400
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 170/348 (48%), Gaps = 48/348 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QG+ N+ L+L C + G ++ + L +
Sbjct: 68 RGIRKVQILSLRRSLSYVIQGLP------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRT 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLKGLSISSVIFILCSM 215
LN+ C +TDS + ++ LK LQ+ C+ +T++G+ L I+ + L S+
Sbjct: 122 LNLSLCKQVTDSSLGRIA--QYLKGLQVLELGGCTNITNTGL-----LLIAWGLHGLKSL 174
Query: 216 IIRLFCLHVF---LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 271
+R C HV + L +T EGC SL L L CQ L+D
Sbjct: 175 NLR-SCRHVSDVGIGHLAGMTRSAAEGCL-------------SLEQLTLQDCQKLTDLAL 220
Query: 272 EKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCN 327
+ S+ + L+VLNL F I+D L+HL + L SLNL SC I D G+++L G
Sbjct: 221 KHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLR 280
Query: 328 LKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DA 383
L L++S +VG L +++ GL L+S++L ISD + R + + L++LN+
Sbjct: 281 LSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQC 340
Query: 384 RQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
+ITD GL + L+ LT +DL+G RIT G + L+ L +
Sbjct: 341 VRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNL 388
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 136/283 (48%), Gaps = 51/283 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L +L L+ C ++ L ++ +GL L
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEQLTLQDCQKLTDLALKHISRGLQGLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-------GLSIS----- 206
LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L GL +S
Sbjct: 233 LNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKV 292
Query: 207 ---SVIFI-----------LCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS 251
S+ +I LCS I ++ + + L LN+ C +T L+ ++
Sbjct: 293 GDQSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA 352
Query: 252 A-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L L ++L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 353 EHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTE 395
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++GL N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LQVLELGGCTNITNTGL----LLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
L L L ++TD ++ R + LR +L CGG ++DAG+ H+ + L LN
Sbjct: 201 CLSLEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
>gi|426371210|ref|XP_004052544.1| PREDICTED: F-box/LRR-repeat protein 14 [Gorilla gorilla gorilla]
Length = 307
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 161/288 (55%), Gaps = 25/288 (8%)
Query: 248 DSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTN 303
D +GSL LNL+ C Q++D + ++ + L+VL LG + IT+ L+ + GL
Sbjct: 17 DPEKEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQR 76
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNL 352
L+SLNL SC + D G+ +L G+ L+ L L D Q + L+H+S GLT L
Sbjct: 77 LKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGL 136
Query: 353 ESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FG 407
+NLSF G ISD L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F
Sbjct: 137 RLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFC 195
Query: 408 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE 465
++ D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LE
Sbjct: 196 DKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLE 255
Query: 466 LIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
LI+ L+ L +++ +RIT GL + L L+ L L ++T ++
Sbjct: 256 LIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 303
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 156/327 (47%), Gaps = 59/327 (18%)
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K+ +L++L+ + C QI+D L + AQ +K L L+
Sbjct: 20 KEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG------LEVLE 55
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 56 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC------ 107
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALG 254
L + + C + L H+ L L LLNL C ++ A L LS +G
Sbjct: 108 -------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHLSHMG 159
Query: 255 SLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNL 309
SL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L
Sbjct: 160 SLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSL 218
Query: 310 DSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
SC I D+G+ + GL L +C+ ++D + HLS LT ++ T I
Sbjct: 219 CSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRI 275
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDT 389
+ L ++ L LK LNL Q+TD+
Sbjct: 276 TKRGLERITQLPCLKVLNLGLWQMTDS 302
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 121 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 180
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 181 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 240
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 241 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 273
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 274 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 301
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 330 CLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 385
C +++D+ +G ++L GL LE N++ TG+ L GL LKSLNL + R
Sbjct: 33 CKQITDSSLGRIA-QYLKGLEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRH 87
Query: 386 ITDTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGG 433
++D G+ L +T GL L L ++TD ++ R LR +L CGG
Sbjct: 88 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG- 146
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 491
++DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++
Sbjct: 147 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 206
Query: 492 -KPLKNLRSLTLESCKVTANDIKRL 515
+ L L+SL+L SC ++ + I R+
Sbjct: 207 AQGLDGLKSLSLCSCHISDDGINRM 231
>gi|46447283|ref|YP_008648.1| hypothetical protein pc1649 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400924|emb|CAF24373.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 521
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 125/253 (49%), Gaps = 33/253 (13%)
Query: 272 EKFSKIGSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN 327
EK S ++ L F+E +TD L+ LK NL+ L L SC + D GL L L N
Sbjct: 282 EKILNYFSNEIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTN 341
Query: 328 LKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 384
L+ L L+ ++ +GL HL+ L NL+ ++L F ++ L L +L+ LNL +
Sbjct: 342 LQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCK 401
Query: 385 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 442
I D GLA LT L L +L+L +TD+G A+L L+ L++ LT+AG+ H+
Sbjct: 402 FIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHL 461
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L +L LNLS G + L + AGL HL PL +L+ L L
Sbjct: 462 VHLVALQYLNLS-----------------GCIYL-------SEAGLAHLAPLTSLQHLNL 497
Query: 503 ESCKVTANDIKRL 515
E C+ N RL
Sbjct: 498 EDCEHFTNARFRL 510
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 6/201 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL L L+NL L+ +T G+
Sbjct: 303 LTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLT 362
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+NL LDL C ++ GL + K L+ L+ LN+ C I D+ + L+ L L+ L +
Sbjct: 363 PLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNL 422
Query: 188 S-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTA 244
S C+ +TD+G+A+L L ++ + C+ + H L L L LNL GC ++
Sbjct: 423 SQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAH--LVHLVALQYLNLSGCIYLSE 480
Query: 245 ACLDSLSALGSLFYLNLNRCQ 265
A L L+ L SL +LNL C+
Sbjct: 481 AGLAHLAPLTSLQHLNLEDCE 501
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 128/276 (46%), Gaps = 57/276 (20%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
++E LN +TD+ + L NLK LQ+ SC +TD+G+A
Sbjct: 291 EIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLA---------------- 334
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 273
CL SL+ L YLNLN C +L+D G
Sbjct: 335 -------------------------------CLPSLTNLQ---YLNLNGCKKLTDAGLAH 360
Query: 274 FSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCL 331
+ + +L+ L+LGF +++T + L H K L L+ LNL C I D GL +LT L L+ L
Sbjct: 361 LTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYL 420
Query: 332 ELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 388
LS T + +GL HL L L+ ++LS+ +++ L L L +L+ LNL +++
Sbjct: 421 NLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSE 480
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
GLA L LT L HL+L + L +FK L
Sbjct: 481 AGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKAL 516
>gi|327272147|ref|XP_003220847.1| PREDICTED: f-box/LRR-repeat protein 14-like [Anolis carolinensis]
Length = 400
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 171/319 (53%), Gaps = 26/319 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + ++ LNL GC +T L ++ + SL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+ L LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q S L+HLS GL+ L +NLSF G ISD L L+ +S L+ LNL
Sbjct: 202 LGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHLSHMSCLRVLNLR 261
Query: 383 A-RQITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 438
+ I+DTG+ L T L+ LD+ F ++ D AY+ + LRSL +C ++D G
Sbjct: 262 SCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEG 321
Query: 439 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 495
+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 322 INRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLP 381
Query: 496 NLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 382 CLKVLNLGLWQMTESEKVR 400
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 170/346 (49%), Gaps = 44/346 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM + L+L C + G + + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------EIESLNLSGCYNLTDNGLGHAFVAEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L L++L++ CS +T++G+ L ++ + L S+ +
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKGLEALELGGCSNITNTGL-----LLVAWGLPRLKSLNL 176
Query: 218 RLFCLH---VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 273
R C H V + L +T EGC LG L L L CQ LSD +
Sbjct: 177 R-SCRHLSDVGIGHLAGMTRSAAEGC------------LG-LEQLTLQDCQKLSDLSLKH 222
Query: 274 FSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL-TGLCNLK 329
S+ + L+ LNL F I+D L+HL ++ L LNL SC I D G+++L TG L
Sbjct: 223 LSRGLSRLRQLNLSFCGGISDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLS 282
Query: 330 CLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQ 385
L++S +VG L +++ GL L S++L ISD G R + + L++LN+ +
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVR 342
Query: 386 ITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
ITD GL + L+ LT +DL+G RIT G + L+ L +
Sbjct: 343 ITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNL 388
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 168/356 (47%), Gaps = 80/356 (22%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H + + S+L++L+ + C QI+D L + + L L +L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQYLKGLEALELGGC 153
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL L L+L C + G+ +L G+ + LE L ++ C
Sbjct: 154 SNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 213
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
++D +K LS GL+ L+ L +S C ++D+G+ +L +S CL V
Sbjct: 214 KLSDLSLKHLSRGLSRLRQLNLSFCGGISDAGLLHLSHMS----------------CLRV 257
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV-- 282
LNL C +SD G + GSL++
Sbjct: 258 ----------LNLRSCD-----------------------NISDTGIMHLAT-GSLRLSG 283
Query: 283 LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLEL 333
L++ F +++ D+ L ++ +GL L SL+L SC I DEG+ + GL L +C+ +
Sbjct: 284 LDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRI 343
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
+D + HLS LT ++ T I+ L ++ L LK LNL Q+T++
Sbjct: 344 TDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKVLNLGLWQMTES 396
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ +ESLNL C G+G + ++ L L C +++D+ +G ++L G
Sbjct: 86 IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEALELGGCSNITNTGL----LLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 452
GL L L +++D +L R LR L + CGG ++DAG+ H+ +S L +LN
Sbjct: 201 CLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGG-ISDAGLLHLSHMSCLRVLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L +G L L+VS ++ L ++ + L LRSL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 319
Query: 510 NDIKRL 515
I R+
Sbjct: 320 EGINRM 325
>gi|13905232|gb|AAH06913.1| Fbx14l protein, partial [Mus musculus]
Length = 327
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 9 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 68
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 69 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 128
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 129 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 188
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 189 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 247
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 248 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 307
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 308 PCLKVLNLGLWQMTDSEKVR 327
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 167/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +
Sbjct: 73 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT----------R 122
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
G L+ L++ C + L H+ L L LLNL C ++ A L L
Sbjct: 123 SAAEGCLGLEQLTLQD-----CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 176
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 177 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 235
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 236 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG-- 292
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 293 CTRITKRGLERITQLPCLKVLNLGLWQMTDS 323
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 71
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 72 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 127
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 128 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 186
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 187 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 246
Query: 510 NDIKRL 515
+ I R+
Sbjct: 247 DGINRM 252
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 142 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 201
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 202 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 261
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 262 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 294
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 295 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 322
>gi|406831321|ref|ZP_11090915.1| hypothetical protein SpalD1_06780 [Schlesneria paludicola DSM
18645]
Length = 785
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 146/276 (52%), Gaps = 22/276 (7%)
Query: 266 LSDDGC---EKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEG 318
LS DG E S++ LK +LNL I+D L+ L + LNL+ C + D
Sbjct: 508 LSADGTISSEIVSQLALLKGRLILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDAT 566
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISD------GSLRKLA 371
+L+GL L L LS T V S+GL ++ L ++ L I+D GS+++L
Sbjct: 567 FSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPLVALELELCDAINDDVCLTLGSMKRLR 626
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
L+ LK + R I+D GL L +LT L L+L+G ++TD+G +L++ K LR L++
Sbjct: 627 WLN-LKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSL 685
Query: 432 GGLTDAGVKHIKDLSSLTLLNLS-----QNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L DAG++ + L SL LNL +LTD+ ++ L L LN++ S++T +
Sbjct: 686 LNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDS 745
Query: 487 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
GL L+ L LR+L + KVT + ++ + R LP
Sbjct: 746 GLEQLQELNQLRTLHVVRTKVTESGREKFR-RALPE 780
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 35/250 (14%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
L ++L G+ ++D+G L+ + L+ C Q++D L GL L +L N +
Sbjct: 529 LILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTN-V 586
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNC----ITDSDMK 174
T+ G+ A + LV L+LE C I+ + + L + +L LN+K I+D ++
Sbjct: 587 TSTGLTQVAENLPLVALELELCDAINDDVCLTLGSMKRLRWLNLKKSGFEKRGISDIGLE 646
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLS----------------ISSVIFILCSMIIR 218
L LT L+ L + +KVTD+G+ +L+ L I S+ ++ +
Sbjct: 647 QLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSLLNLNDAGIESLSPLISLERLN 706
Query: 219 LFCLHVF------------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
L F LT LQ+LT LNL G +T + L+ L L L L++ R ++
Sbjct: 707 LMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDSGLEQLQELNQLRTLHVVRTKV 766
Query: 267 SDDGCEKFSK 276
++ G EKF +
Sbjct: 767 TESGREKFRR 776
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 43/291 (14%)
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F F + L+ L + + + I+++ + A L + L+LE G
Sbjct: 487 FQFAVSPEGTPLQ----LVTIADTALSADGTISSEIVSQLALLKGRLILNLEGARISDAG 542
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSIS 206
L+ L + LN++ C+ +TD+ LSGL L +L +S + VT +G+ + + L +
Sbjct: 543 TAQLRAL-PIVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPLV 601
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNL-----EGCPVTAACLDSLSALGSLFYLNL 261
++ LC I CL L S+++L LNL E ++ L+ L L L LNL
Sbjct: 602 ALELELCDAINDDVCLT--LGSMKRLRWLNLKKSGFEKRGISDIGLEQLKTLTELEMLNL 659
Query: 262 NRCQLSDDG------------------------CEKFSKIGSLKVLNLGFNE------IT 291
+++D G E S + SL+ LNL F E +T
Sbjct: 660 YGNKVTDAGLIHLQSLKRLRDLDLSLLNLNDAGIESLSPLISLERLNLMFTEGFAGPSLT 719
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
D L L L LNL+ + D GL L L L+ L + T+V SG
Sbjct: 720 DRATRSLTPLQQLTWLNLNGSKLTDSGLEQLQELNQLRTLHVVRTKVTESG 770
>gi|355785801|gb|EHH65984.1| F-box and leucine-rich repeat protein 14 [Macaca fascicularis]
Length = 330
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 174/322 (54%), Gaps = 30/322 (9%)
Query: 235 LNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FN 288
LNL GC +T L + +GSL LNL+ C Q++D + ++ + L+VL LG +
Sbjct: 7 LNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCS 66
Query: 289 EITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ- 337
IT+ L+ + GL L+SLNL SC + D G+ +L G+ L+ L L D Q
Sbjct: 67 NITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK 126
Query: 338 VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA-- 392
+ L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL + I+DTG+
Sbjct: 127 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 186
Query: 393 ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLT 449
A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D G+ + ++ + L
Sbjct: 187 AMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLR 245
Query: 450 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 507
LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L L+ L L ++
Sbjct: 246 TLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQM 305
Query: 508 TANDIKRLQSRDLPNLVSFRPE 529
T D ++ D L + R
Sbjct: 306 T--DSEKEARGDFSPLFTVRTR 325
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 164/322 (50%), Gaps = 30/322 (9%)
Query: 154 LMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGLSIS 206
+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL +
Sbjct: 1 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVL 60
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALG--SLF 257
+ CS I L + LQ+L LNL C + A + +A G L
Sbjct: 61 ELGG--CSNITNTGLL-LIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 117
Query: 258 YLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-G 313
L L CQ L+D + S+ + L++LNL F I+D L+HL + +L SLNL SC
Sbjct: 118 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 177
Query: 314 IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RK 369
I D G+++L G L L++S +VG L +++ GL L+S++L ISD + R
Sbjct: 178 ISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRM 237
Query: 370 LAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRS 426
+ + L++LN+ +ITD GL + L+ LT +DL+G RIT G + L+
Sbjct: 238 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKV 297
Query: 427 LEICGGGLTDAGVKHIKDLSSL 448
L + +TD+ + D S L
Sbjct: 298 LNLGLWQMTDSEKEARGDFSPL 319
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 164/327 (50%), Gaps = 38/327 (11%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 2 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 61
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 62 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC------ 113
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALG 254
L + + C + L H+ L L LLNL C ++ A L LS +G
Sbjct: 114 -------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHLSHMG 165
Query: 255 SLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNL 309
SL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+SL+L
Sbjct: 166 SLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSL 224
Query: 310 DSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
SC I D+G+ + GL L +C+ ++D + HLS LT ++ T I
Sbjct: 225 CSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG--CTRI 281
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDT 389
+ L ++ L LK LNL Q+TD+
Sbjct: 282 TKRGLERITQLPCLKVLNLGLWQMTDS 308
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 157/304 (51%), Gaps = 24/304 (7%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H +++ +L++L+ + C QI+D L + + L L L
Sbjct: 6 SLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 65
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL L L+L C + G+ +L G+ + LE L ++ C
Sbjct: 66 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 125
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLH 223
+TD +K +S GLT L+ L +S C ++D+G+ +L + S+ S+ C I +H
Sbjct: 126 KLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMH 185
Query: 224 VFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSL 280
+ + SL +L+ L++ C V L ++ L L L+L C +SDDG + ++ L
Sbjct: 186 LAMGSL-RLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGL 244
Query: 281 KVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ 337
+ LN+G ITD+ L + + L+ L ++L C I GL +T L LK L L Q
Sbjct: 245 RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQ 304
Query: 338 VGSS 341
+ S
Sbjct: 305 MTDS 308
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 301 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 351
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 1 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 59
Query: 352 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 399
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 60 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 115
Query: 400 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 116 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 174
Query: 456 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 512
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 175 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 234
Query: 513 KRL 515
R+
Sbjct: 235 NRM 237
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 76/240 (31%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL
Sbjct: 141 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL------------- 186
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDM 173
G + L LD+ C ++ + +GL L+SL++ C+ D
Sbjct: 187 -----------AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGIN 235
Query: 174 KPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+ + + L++L I C ++TD G L + L +L
Sbjct: 236 RMVRQMHGLRTLNIGQCVRITDKG-------------------------LELIAEHLSQL 270
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T ++L GC +++ G E+ +++ LKVLNLG ++TD
Sbjct: 271 TGIDLYGCT-----------------------RITKRGLERITQLPCLKVLNLGLWQMTD 307
>gi|291392871|ref|XP_002712822.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryctolagus cuniculus]
Length = 400
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L++LNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 163/314 (51%), Gaps = 30/314 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALG-- 254
+ + CS I L + LQ+L LNL C + A + +A G
Sbjct: 146 EVLELGG--CSNITNTGLL-LIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEGCL 202
Query: 255 SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 311
L L L CQ L+D + S+ + L++LNL F I+D L+HL + +L SLNL S
Sbjct: 203 GLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 262
Query: 312 C-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL 367
C I D G+++L G L L++S +VG L +++ GL L+S++L ISD +
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 368 -RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKN 423
R + + L++LN+ +ITD GL + L+ LT +DL+G RIT G +
Sbjct: 323 NRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPC 382
Query: 424 LRSLEICGGGLTDA 437
L+ L + +TD+
Sbjct: 383 LKVLNLGLWQMTDS 396
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 169/357 (47%), Gaps = 82/357 (22%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H +++ +L++L+ + C QI+D L + + L L L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 153
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL L L+L C + G+ +L G+ + LE L ++ C
Sbjct: 154 SNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 213
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
+TD +K +S GLT L+ L +S C ++D+G+ +L
Sbjct: 214 KLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL------------------------ 249
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV- 282
S +GSL LNL C +SD G + +GSL++
Sbjct: 250 --------------------------SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLS 282
Query: 283 -LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLE 332
L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ + GL L +C+
Sbjct: 283 GLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVR 342
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
++D + HLS LT ++ T I+ L ++ L LK LNL Q+TD+
Sbjct: 343 ITDKGLELIA-EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 135/270 (50%), Gaps = 25/270 (9%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G S++T++GL+ + L++L+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGH 189
Query: 102 LRGLSN--------LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
L G++ L L+ + +T +K + GL L L+L C I GL++L
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAY----LKGLSI 205
+ L SLN++ C+ I+D+ + L+ G L L +S C KV D +AY L GL
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKS 309
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSA-LGSLFYLNLNR 263
S LCS I ++ + + L LN+ C +T L+ ++ L L ++L
Sbjct: 310 LS----LCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 365
Query: 264 C-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
C +++ G E+ +++ LKVLNLG ++TD
Sbjct: 366 CTRITKRGLERITQLPCLKVLNLGLWQMTD 395
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LK+LNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
>gi|403286756|ref|XP_003934642.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Saimiri
boliviensis boliviensis]
Length = 349
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 170/304 (55%), Gaps = 28/304 (9%)
Query: 235 LNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FN 288
LNL GC +T L + +GSL LNL+ C Q++D + ++ + L+VL LG +
Sbjct: 43 LNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCS 102
Query: 289 EITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ- 337
IT+ L+ + GL L+SLNL SC + D G+ +L G+ +L+ L L D Q
Sbjct: 103 NITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLSLEQLTLQDCQK 162
Query: 338 VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA-- 392
+ L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL + I+DTG+
Sbjct: 163 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 222
Query: 393 ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLT 449
A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D G+ + ++ + L
Sbjct: 223 AMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLR 281
Query: 450 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 507
LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L L+ L L ++
Sbjct: 282 TLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQM 341
Query: 508 TAND 511
T ++
Sbjct: 342 TDSE 345
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 167/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 93
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 94 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 149
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
LS+ + C + L H+ L L LLNL C ++ A L L
Sbjct: 150 -----------LSLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 197
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 198 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 256
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 257 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG-- 313
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 314 CTRITKRGLERITQLPCLKVLNLGLWQMTDS 344
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 123/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 92
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 93 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 148
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 149 CLSLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 207
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 208 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 267
Query: 510 NDIKRL 515
+ I R+
Sbjct: 268 DGINRM 273
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 163 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 222
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 223 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 282
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 283 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 315
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 316 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 343
>gi|149279200|ref|ZP_01885332.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
gi|149229962|gb|EDM35349.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
Length = 1105
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 122/463 (26%), Positives = 203/463 (43%), Gaps = 13/463 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ +++S SD+ GL C+ NLQ L +F + + D LE RG +L L+ RN
Sbjct: 605 QIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNM-LEDKYLEVFRGAESLRYLNLDRN 663
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ F GL NL LDL L L L+S+N+ N +
Sbjct: 664 R-FNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLH-LNELEGHGFDIF 720
Query: 177 SGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
T L+ L + +++TD + Y + L ++++ F V+L + + L L
Sbjct: 721 ESTTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLNENQFNGSGF---VYLKNAKSLDTL 777
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+L P+ + L L L YL L +L D G + F+ L+ + L ITD+ L
Sbjct: 778 SLSDNPIDSQYLIHFRNLDKLNYLELGNIRLGD-GLKYFTNSYLLEDIRLYNTGITDQDL 836
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L+ ++ + E G L L+ L+++D Q+GSS ++
Sbjct: 837 QSLVFGNKLKRIDFSGNALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIFKDSHHINE 896
Query: 355 INLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+NLS T I+ G L + ++L L + + D L+ L L+L G R T S
Sbjct: 897 VNLSNTQINPGHLNYFSHCAATLTRLYMSNLNLQDNDLSVFGGFQQLKDLNLSGNRFTGS 956
Query: 414 GAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
L++ L L + L D + +++ SSL LNLSQN D + L + +
Sbjct: 957 FLIQLKHLATELEELNLANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGLINLRTSASV 1016
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L LN+S + I+ L+ L+ + L+ + L K + +K L
Sbjct: 1017 LEVLNLSGNSISDDDLQFLEHARFLKEVRLADNKFNGSCVKFL 1059
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 167/401 (41%), Gaps = 53/401 (13%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
I D + G + ++IS S + G+A+ +I+ I L ++ L VF
Sbjct: 591 VIQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDKYLEVFR 650
Query: 227 TSLQKLTLLNLEGCPVTAACL--------------------DSLSALGS---LFYLNLNR 263
+ + L LNL+ +CL D+L LGS L +NL+
Sbjct: 651 GA-ESLRYLNLDRNRFNGSCLRNFVGLNLEHLDLSYNEITDDNLKLLGSCPNLKSINLHL 709
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECL------------------------VHLK 299
+L G + F L+ L LG N +TD+CL V+LK
Sbjct: 710 NELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLK 769
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
+L++L+L I + L++ L L LEL + ++G GL++ + LE I L
Sbjct: 770 NAKSLDTLSLSDNPIDSQYLIHFRNLDKLNYLELGNIRLG-DGLKYFTNSYLLEDIRLYN 828
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL 418
TGI+D L+ L + LK ++ +T L L LD+ +I S
Sbjct: 829 TGITDQDLQSLVFGNKLKRIDFSGNALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIF 888
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
++ ++ + + + + + ++LT L +S N NL D L + G L LN
Sbjct: 889 KDSHHINEVNLSNTQINPGHLNYFSHCAATLTRLYMS-NLNLQDNDLSVFGGFQQLKDLN 947
Query: 478 VSNSRITSAGLRHLKPLK-NLRSLTLESCKVTANDIKRLQS 517
+S +R T + L LK L L L L + ++ ++ L++
Sbjct: 948 LSGNRFTGSFLIQLKHLATELEELNLANNQLNDQNLYYLEA 988
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 167/395 (42%), Gaps = 22/395 (5%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G +L +DLS +++TD L L C NL+S++ + ++ G + + L L+
Sbjct: 675 GLNLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN-ELEGHGFDIFESTTELEWLTL-G 732
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+N +T ++ F+ ++L L L G V LK L++L++ N I +
Sbjct: 733 SNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKNAKSLDTLSLS-DNPIDSQYLIH 791
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ----- 230
L L L++ ++ D GL + ++L IRL+ + LQ
Sbjct: 792 FRNLDKLNYLELGNIRLGD-------GLKYFTNSYLLED--IRLYNTGITDQDLQSLVFG 842
Query: 231 -KLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
KL ++ G +T D L L L++N Q+ + F + +NL
Sbjct: 843 NKLKRIDFSGNALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIFKDSHHINEVNLSNT 902
Query: 289 EITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+I L + L L + + + D L G LK L LS + S L L
Sbjct: 903 QINPGHLNYFSHCAATLTRLYMSNLNLQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQLK 962
Query: 348 GL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDL 405
L T LE +NL+ ++D +L L SSL +LNL + GL L TS + L L+L
Sbjct: 963 HLATELEELNLANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGLINLRTSASVLEVLNL 1022
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
G I+D +L + + L+ + + + VK
Sbjct: 1023 SGNSISDDDLQFLEHARFLKEVRLADNKFNGSCVK 1057
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 3/207 (1%)
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG 372
I DE L G + +E+S + + GL S NL+ + LSF + D L G
Sbjct: 592 IQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDKYLEVFRG 651
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
SL+ LNLD + + L L L HLDL ITD L + NL+S+ +
Sbjct: 652 AESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN 710
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
L G + + L L L N LTD L S L +L ++ ++ +G +LK
Sbjct: 711 ELEGHGFDIFESTTELEWLTLGSN-RLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLK 769
Query: 493 PLKNLRSLTLESCKVTANDIKRLQSRD 519
K+L +L+L + + + ++ D
Sbjct: 770 NAKSLDTLSLSDNPIDSQYLIHFRNLD 796
>gi|301617436|ref|XP_002938142.1| PREDICTED: f-box/LRR-repeat protein 14-like [Xenopus (Silurana)
tropicalis]
Length = 400
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 171/320 (53%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + L + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GL L +NLSF G ISD L L+ + L+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQL 380
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTESEKVR 400
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 171/348 (49%), Gaps = 48/348 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QG+ ++ L+L C + G ++ + L S
Sbjct: 68 RGIRKVQILSLRRSLSYVIQGLP------DIESLNLSGCYNLTDNGLGHAFVQEIGSLRS 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLKGLSISSVIFILCSM 215
LN+ C +TDS + ++ LK LQ+ C+ +T++G+ L I+ + L S+
Sbjct: 122 LNLSLCKQVTDSSLGRIA--QYLKGLQVLELGGCTNITNTGL-----LLIAWGLHGLKSL 174
Query: 216 IIRLFCLHVF---LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 271
+R C HV + L +T EGC LG L L L CQ L+D
Sbjct: 175 NLR-SCRHVSDVGIGHLAGMTRSAAEGC------------LG-LEQLTLQDCQKLTDLSL 220
Query: 272 EKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCN 327
+ S+ + L+VLNL F I+D L+HL + L SLNL SC I D G+++L G
Sbjct: 221 KHISRGLQGLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLR 280
Query: 328 LKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DA 383
L L++S +VG L +++ GL L+S++L ISD + R + + L++LN+
Sbjct: 281 LSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQC 340
Query: 384 RQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
+ITD GL + L+ LT +DL+G RIT G + L+ L +
Sbjct: 341 VRITDKGLELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNL 388
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++GL ++ESLNL C G+G + + L +L C +++D+ +G ++L G
Sbjct: 86 IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LQVLELGGCTNITNTGL----LLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R + LR +L CGG ++DAG+ H+ + L LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 59/287 (20%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L +GL
Sbjct: 190 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLQ 228
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-------GLSIS- 206
L LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L GL +S
Sbjct: 229 GLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSF 288
Query: 207 -------SVIFI-----------LCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACL 247
S+ +I LCS I ++ + + L LN+ C +T L
Sbjct: 289 CDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGL 348
Query: 248 DSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+ ++ L L ++L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 349 ELIAEHLSQLTGIDLYGCTRITKKGLERITQLPCLKVLNLGLWQMTE 395
>gi|290981112|ref|XP_002673275.1| predicted protein [Naegleria gruberi]
gi|284086857|gb|EFC40531.1| predicted protein [Naegleria gruberi]
Length = 461
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 126/491 (25%), Positives = 211/491 (42%), Gaps = 64/491 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D++ SD+ + + L NL+ L+ I D GLE L L LT L+ R NN
Sbjct: 4 LKRLDIASSDIGNEQVKILSQFKNLELLNLGDN-HIKDEGLELLSDLKGLTLLNIR-NNR 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
I + +++ + NL L++++ G+ + + L L LN+ C + KP+S
Sbjct: 62 I--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGI---TSCKPIS 116
Query: 178 -GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L LKSL I+ + + G + +++LT L+
Sbjct: 117 EKLQYLKSLNINRNNLGSKGAQNV--------------------------AEMKQLTCLS 150
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
+ + A +S L L L +N ++ D G E K+ L L++ +N+I + +V
Sbjct: 151 IGNNHIHAKGALYISRLEKLTALCINGNRIGDVGAEYIIKMKQLTFLDMQYNQI-ENVMV 209
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
+TNL LNL I GLV++T L LK L L L L + +L+ ++
Sbjct: 210 ESSEITNLTYLNLGYNKITTNGLVSITKLDQLKSLYLHYNYYLDPNL--LERMKHLKKLD 267
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-------FGAR 409
+S + + + ++ L SL + I TG+ ++T L LT LD+ GA
Sbjct: 268 IS-KNFTQNEFKSICEMTHLTSLIVPRNSINKTGIQSITELKHLTELDIENNEIGTTGAE 326
Query: 410 -----------------ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
I GA ++ NL +L I + G K+I +S LT L
Sbjct: 327 KISEMKHLLILKIDYNNICSEGARFISQLPNLTALSIGANNIRTVGAKYIGQMSQLTELR 386
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
+ + + D+ ++ IS LT L L+++ +T G + + LKNL L N +
Sbjct: 387 IYSDYEIGDEGVKAISRLTRLTKLHINGIGMTDEGAKSILALKNLTWLCAYWPNPYGNQV 446
Query: 513 KRLQSRDLPNL 523
+ + R LP L
Sbjct: 447 RNML-RKLPAL 456
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 48/249 (19%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLT------- 350
+ +L+ L++ S IG+E + L+ NL+ L L D + GL LS GLT
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60
Query: 351 ------------NLESINLSFTGISDGSLRKLA--------------GLSS--------- 375
NL +N+ I D + ++A G++S
Sbjct: 61 RIESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITSCKPISEKLQ 120
Query: 376 -LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
LKSLN++ + G + + LT L + I GA Y+ + L +L I G +
Sbjct: 121 YLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCINGNRI 180
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
D G ++I + LT L++ N + + S +T L LN+ ++IT+ GL + L
Sbjct: 181 GDVGAEYIIKMKQLTFLDMQYNQ--IENVMVESSEITNLTYLNLGYNKITTNGLVSITKL 238
Query: 495 KNLRSLTLE 503
L+SL L
Sbjct: 239 DQLKSLYLH 247
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 95/185 (51%), Gaps = 7/185 (3%)
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ +LK L+++ + +G+ ++ LS NLE +NL I D L L+ L L LN+
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIK 443
+I + ++ + LTHL++ RI D G + N +L L + G G+T K I
Sbjct: 61 RI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITSC--KPIS 116
Query: 444 D-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ L L LN+++N NL K + ++ + L L++ N+ I + G ++ L+ L +L +
Sbjct: 117 EKLQYLKSLNINRN-NLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCI 175
Query: 503 ESCKV 507
++
Sbjct: 176 NGNRI 180
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ +L+ ++++ + I + ++ L+ +L+ LNL I D GL L+ L GLT L++
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI 467
RI + KNL L I + D G++ I ++L+ L LN+S C +T +
Sbjct: 61 RI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVS-GCGITS-CKPIS 116
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L L SLN++ + + S G +++ +K L L++ + + A
Sbjct: 117 EKLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHA 158
>gi|410046126|ref|XP_003952131.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 14 [Pan
troglodytes]
Length = 568
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 178/333 (53%), Gaps = 30/333 (9%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 232 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 291
Query: 277 IGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 292 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 351
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF GISD L L+ + SL+SLNL
Sbjct: 352 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 411
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 412 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 470
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 471 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 530
Query: 495 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
L+ L L ++T D ++ D L + R
Sbjct: 531 PCLKVLNLGLWQMT--DSEKEARGDFSPLFTVR 561
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 167/335 (49%), Gaps = 46/335 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 295
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 296 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 351
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 352 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 399
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 400 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 458
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLES 354
SL+L SC I D+G+ + GL L +C+ ++D GL HLS LT ++
Sbjct: 459 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDL 513
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 514 YGC--TRITKRGLERITQLPCLKVLNLGLWQMTDS 546
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 365 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 424
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 425 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 484
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 485 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGC--- 516
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 517 --------------------TRITKRGLERITQLPCLKVLNLGLWQMTD 545
>gi|290993787|ref|XP_002679514.1| predicted protein [Naegleria gruberi]
gi|284093131|gb|EFC46770.1| predicted protein [Naegleria gruberi]
Length = 282
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 118/271 (43%), Gaps = 51/271 (18%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI---- 314
L L RC L+ KI SLK L+L N I DEC +L LT+LE L+L I
Sbjct: 30 LGLCRCALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHDNSIEGKC 89
Query: 315 ---------------------GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+E ++ L+ +LK L LS +G S + HLS LTNL+
Sbjct: 90 FKEFSSLKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSSI-HLSNLTNLK 148
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+ L+ I+ G L + L L+ L + + L+ L L L +FG + +
Sbjct: 149 ELELNLCKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKN 208
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
++ N K LR+LE+ + DAG L+SL SGL L
Sbjct: 209 STNFIGNIKTLRNLEMFSNNIYDAG------LASL-------------------SGLVNL 243
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L + ++RIT G++HL +K L L L S
Sbjct: 244 QILKLDSTRITDTGIQHLSQMKELEILRLNS 274
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 139/279 (49%), Gaps = 5/279 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+T LKSL + + + D G+ ++ L + S+ C++ + +TSL+KL +L
Sbjct: 1 ITTLKSLNLHHNNIEDEGVEFISDLKLESLGLCRCALTSKSTSFLCKITSLKKL---DLS 57
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVH 297
+ C LS L L L+L+ + ++FS + LK L L N I+ +E +++
Sbjct: 58 ENIINDECGFYLSMLTDLEELDLHDNSIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIY 117
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L +L+SLNL IG ++L+ L NLK LEL+ ++ GL S L LE + +
Sbjct: 118 LSQTVSLKSLNLSQNNIGQSS-IHLSNLTNLKELELNLCKITKGGLSFFSNLKKLEILKI 176
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
S + +L+ L L+ L++ + + ++ L +L++F I D+G A
Sbjct: 177 SQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLAS 236
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L NL+ L++ +TD G++H+ + L +L L+ N
Sbjct: 237 LSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLNSN 275
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 29/271 (10%)
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
I +LK LNL N I DE + + L LESL L C + + L + +LK L+LS+
Sbjct: 1 ITTLKSLNLHHNNIEDEGVEFISDLK-LESLGLCRCALTSKSTSFLCKITSLKKLDLSEN 59
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGIS-------------------------DGSLRKLA 371
+ +LS LT+LE ++L I + ++ L+
Sbjct: 60 IINDECGFYLSMLTDLEELDLHDNSIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLS 119
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
SLKSLNL I + + L++LT L L+L +IT G ++ N K L L+I
Sbjct: 120 QTVSLKSLNLSQNNIGQSSIH-LSNLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQ 178
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
L + + L L +L++ C L + I + L +L + ++ I AGL L
Sbjct: 179 NSLGYDDFEELSHLVRLRILSIF-GCGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLASL 237
Query: 492 KPLKNLRSLTLESCKVTANDIKRL-QSRDLP 521
L NL+ L L+S ++T I+ L Q ++L
Sbjct: 238 SGLVNLQILKLDSTRITDTGIQHLSQMKELE 268
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 105/220 (47%), Gaps = 37/220 (16%)
Query: 5 DISQQIFNEL--VYSRCLTEVSLEAFRDCALQDLCLGQYPG-------------VNDKWM 49
D+S+ I N+ Y LT++ D +++ C ++ ++ +
Sbjct: 55 DLSENIINDECGFYLSMLTDLEELDLHDNSIEGKCFKEFSSLKKLKTLKLCQNRISQEEA 114
Query: 50 DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
+ SQ SL S++LS +++ S IHL + +NL+ L+ N C +I+ GGL L L
Sbjct: 115 MIYLSQTVSLKSLNLSQNNIGQSS-IHLSNLTNLKELELNLC-KITKGGLSFFSNLKKLE 172
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLV--------NLKGLMKLESL 160
L +N + G F L +LV+L R I G GL N+K L LE
Sbjct: 173 ILKISQN----SLGYDDFEELSHLVRL---RILSIFGCGLEKNSTNFIGNIKTLRNLE-- 223
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
+ N I D+ + LSGL NL+ L++ +++TD+GI +L
Sbjct: 224 --MFSNNIYDAGLASLSGLVNLQILKLDSTRITDTGIQHL 261
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 28/197 (14%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS 206
++ L + L+SLN+ N I S + LS LTNLK L+++ K+T G++
Sbjct: 114 AMIYLSQTVSLKSLNLSQNN-IGQSSI-HLSNLTNLKELELNLCKITKGGLS-------- 163
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
F ++L+KL +L + + + LS L L L++ C L
Sbjct: 164 ------------------FFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIFGCGL 205
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
+ I +L+ L + N I D L L GL NL+ L LDS I D G+ +L+ +
Sbjct: 206 EKNSTNFIGNIKTLRNLEMFSNNIYDAGLASLSGLVNLQILKLDSTRITDTGIQHLSQMK 265
Query: 327 NLKCLELSDTQVGSSGL 343
L+ L L+ +G+ L
Sbjct: 266 ELEILRLNSNSLGNETL 282
>gi|290978509|ref|XP_002671978.1| predicted protein [Naegleria gruberi]
gi|284085551|gb|EFC39234.1| predicted protein [Naegleria gruberi]
Length = 284
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 2/228 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ L+ LT L++ + L+S+ L +L LN+ + E + +L L++
Sbjct: 59 ISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIG--LVEPIINLKTLTALDI 116
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G N I +E + + LT L SL +D I +EG L L NL L+L+ + +G G +
Sbjct: 117 GENSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGAKF 176
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+ T L+ + LS IS+ + L+ L+ L L L I D GL L+SL L +L++
Sbjct: 177 IGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNYLNV 236
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
G +ITD G ++R +NL+ + I LT G I+++S T L+L
Sbjct: 237 SGNQITDEGVVFIREMENLKRISITNNLLTAVGENLIQEMSITTDLDL 284
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 32/245 (13%)
Query: 269 DGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTG 324
DG + I LK L++G++ I +E L + L NL LN+ S IG E ++NL
Sbjct: 51 DGVGRAKSISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGLVEPIINLKT 110
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L L++ + +G+ G++ +S LT L S+ + + I++ + L L +L L+L
Sbjct: 111 LT---ALDIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGS 167
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
I D G + T L HL L A I++ G YL + L L + + D G+KH
Sbjct: 168 NIGDEGAKFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKH--- 224
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
LSSL +LN LNVS ++IT G+ ++ ++NL+ +++ +
Sbjct: 225 LSSLKMLNY----------------------LNVSGNQITDEGVVFIREMENLKRISITN 262
Query: 505 CKVTA 509
+TA
Sbjct: 263 NLLTA 267
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 110/209 (52%), Gaps = 4/209 (1%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNLESL 307
S+S L +L L++ ++ ++G E ++ +L LN+ N I E +++LK LT +L
Sbjct: 58 SISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGLVEPIINLKTLT---AL 114
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
++ IG+EG+ +++ L L L + + G ++L L NL ++L+ + I D
Sbjct: 115 DIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGA 174
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+ + + LK L L I++ G+ L+SL L L L I D G +L + K L L
Sbjct: 175 KFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNYL 234
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ G +TD GV I+++ +L ++++ N
Sbjct: 235 NVSGNQITDEGVVFIREMENLKRISITNN 263
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 58/280 (20%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ D NL +LD + +I + GLE + L NLT L+ R NN I LV+
Sbjct: 59 ISDLKNLTTLDIGYS-RIGNEGLESIGQLENLTRLNIRSNN-------------IGLVE- 103
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++NLK L L+ N I + +K +S LT L SL I + + G
Sbjct: 104 ----------PIINLKTLTALDI----GENSIGNEGVKSISKLTELTSLFIDYDDINEEG 149
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
YL C L LT+L+L G + + L
Sbjct: 150 AKYL--------------------C------ELPNLTILDLTGSNIGDEGAKFIGQSTKL 183
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
+L L+ +S+ G S + L L L N+I DE L HL L L LN+ I D
Sbjct: 184 KHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITD 243
Query: 317 EGLVNLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLE 353
EG+V + + NLK + +++ T VG + ++ +S T+L+
Sbjct: 244 EGVVFIREMENLKRISITNNLLTAVGENLIQEMSITTDLD 283
>gi|115689700|ref|XP_783241.2| PREDICTED: F-box/LRR-repeat protein 13-like [Strongylocentrotus
purpuratus]
Length = 871
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 145/524 (27%), Positives = 232/524 (44%), Gaps = 98/524 (18%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT+ S +A C LQDL + + PG+ND M +A S LL +++S +++TD+ L L
Sbjct: 312 LTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNITDATLRLLA 371
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
+ CSNLQ L +C + SD GL++L RG L L IT G K +G
Sbjct: 372 RCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKNISG----- 426
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
G KL+ L I C + D DM + ++ +C +
Sbjct: 427 ------------------GCPKLQHLIINDCYTLRD-DM--------IVAVAANCHNI-- 457
Query: 195 SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG-CPVTAACLDSLSAL 253
I++L +I+ V ++ +H +KL + +EG C +T A S L
Sbjct: 458 RCISFLYTPNITDV-------ALKALAVH------RKLQQIRIEGNCKITDA---SFKLL 501
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC- 312
G + ++L +SD C + ITD L L N+ LN+ C
Sbjct: 502 GR-YCVDLRHIYVSD--CPR----------------ITDAALKSLATCRNINVLNVADCI 542
Query: 313 GIGDEGLVNLT-GLCNLK--------CLELSDTQVGSSGLRHLSGLTNLESINLSFT-GI 362
I D G+ NL G K C+ ++D + ++ +L + F+ I
Sbjct: 543 RISDNGVRNLVEGPSGPKLREMNLTNCVRVTDVSI----MKITQKCYSLVYGSFCFSEHI 598
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSG-AAYLRN 420
+D L + +L SL++ ITDTGL AL + L + L +ITD G + +
Sbjct: 599 TDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLSECHQITDLGIQKFAQQ 658
Query: 421 FKNLRSLEICGG-GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLN 477
++L L+I LTD +K++ L+ LN++ L+D ++ ISG+ L SLN
Sbjct: 659 CRDLDRLDISHCLQLTDQAIKNLAFCCRKLSFLNIAGCSQLSDMSIRYISGVCHYLQSLN 718
Query: 478 VSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTANDIKRLQSR 518
S +++ +R L K LK LR+L + C +T I +L ++
Sbjct: 719 FSGCIKVSDDSMRFLRKGLKRLRNLNMLYCHLITKPTIVKLSAK 762
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 118/478 (24%), Positives = 203/478 (42%), Gaps = 84/478 (17%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMK 156
L+H R + L+ + + +T KA NL L++ C ++ + +G
Sbjct: 294 LQHYRPY--VLHLNIKGCSMLTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSV 351
Query: 157 LESLNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCS 214
L LNI + N ITD+ ++ L+ +NL+ L ++ C + +D G+ YL G
Sbjct: 352 LLYLNISFTN-ITDATLRLLARCCSNLQYLSLAYCKRFSDKGLQYL-GTGRGG------- 402
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQ-LSDD-- 269
++L L+L GCP +T ++S L +L +N C L DD
Sbjct: 403 ---------------RRLVHLDLSGCPQITVNGYKNISGGCPKLQHLIINDCYTLRDDMI 447
Query: 270 -----GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLT 323
C I L N ITD L L L+ + ++ +C I D L
Sbjct: 448 VAVAANCHNIRCISFLYTPN-----ITDVALKALAVHRKLQQIRIEGNCKITDASFKLLG 502
Query: 324 GLC-NLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSS---LK 377
C +L+ + +SD ++ + L+ L+ N+ +N++ ISD +R L S L+
Sbjct: 503 RYCVDLRHIYVSDCPRITDAALKSLATCRNINVLNVADCIRISDNGVRNLVEGPSGPKLR 562
Query: 378 SLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGL 434
+NL + ++TD + +T L + F ITD+GA L N L SL+I G +
Sbjct: 563 EMNLTNCVRVTDVSIMKITQKCYSLVYGSFCFSEHITDAGAEMLGNMPALSSLDISGCNI 622
Query: 435 TDAGV------KHIKD--------LSSLTLLNLSQNC------------NLTDKTLE-LI 467
TD G+ H++D ++ L + +Q C LTD+ ++ L
Sbjct: 623 TDTGLGALGNCYHLRDVVLSECHQITDLGIQKFAQQCRDLDRLDISHCLQLTDQAIKNLA 682
Query: 468 SGLTGLVSLNVSN-SRITSAGLRHLKPL-KNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L LN++ S+++ +R++ + L+SL C ++D R + L L
Sbjct: 683 FCCRKLSFLNIAGCSQLSDMSIRYISGVCHYLQSLNFSGCIKVSDDSMRFLRKGLKRL 740
>gi|328950290|ref|YP_004367625.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
gi|328450614|gb|AEB11515.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
Length = 462
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/359 (32%), Positives = 175/359 (48%), Gaps = 37/359 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR-- 115
+L+++DL G+ + D L L + L+ LD +I+D L L+NLT L
Sbjct: 85 NLVTLDLKGNRIAD--LTPLAELRYLEELDL-VSNRITD-----LAPLANLTRLKRLHLG 136
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN + Q ++ AGL L +L + R+ L L L +L L + W N +TD ++P
Sbjct: 137 NNQV--QSLEPLAGLTQLTELRIGN-NRV-ADLAPLADLGRLAVL-VAWRNAVTD--LQP 189
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ LT ++ L ++ ++VTD + L L+ +F+ + I L L L +L +L
Sbjct: 190 LANLTRMRVLSLASNRVTD--LTPLAELAQLDTLFLSENQIADLAP----LAGLTQLKVL 243
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+L+ +T LD L+ L L L L+ Q++D + + +L+VL+ N I D L
Sbjct: 244 SLDFNRIT--HLDPLARLVELTELGLDANQIAD--LTPLAGLTNLQVLSASENRIAD--L 297
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L GL LE L L+ I D + L GL LK LEL Q+ L L+GLT L +
Sbjct: 298 TPLGGLVRLEQLGLNFNRIRD--ISALEGLKALKVLELEGNQI--VNLAPLAGLTELRVL 353
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
L I+D L L L +L L + +ITD G AL L L + L R+T+ G
Sbjct: 354 VLGQNRIAD--LTPLGALVNLVQLEVSRNEITDLG--ALAQLENLVRVSLVRNRVTNLG 408
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
L+ L++LN R+I L L L LDL G RI D L + L L++
Sbjct: 61 LARLEALNAAERRIQ--SLEGLEHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDLVSN 116
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA------ 486
+TD + + +L+ L L+L N ++LE ++GLT L L + N+R+
Sbjct: 117 RITD--LAPLANLTRLKRLHLGNN---QVQSLEPLAGLTQLTELRIGNNRVADLAPLADL 171
Query: 487 -----------GLRHLKPLKNL---RSLTLESCKVT 508
+ L+PL NL R L+L S +VT
Sbjct: 172 GRLAVLVAWRNAVTDLQPLANLTRMRVLSLASNRVT 207
>gi|395845618|ref|XP_003795524.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 3 [Otolemur
garnettii]
Length = 387
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 167/306 (54%), Gaps = 28/306 (9%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 202 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 495 KNLRSL 500
L+ L
Sbjct: 381 PCLKRL 386
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 160/321 (49%), Gaps = 38/321 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT----------R 195
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
G L+ L++ C + L H+ L L LLNL C ++ A L L
Sbjct: 196 SAAEGCLGLEQLTLQD-----CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 308
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 309 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYGC- 366
Query: 359 FTGISDGSLRKLAGLSSLKSL 379
T I+ L ++ L LK L
Sbjct: 367 -TRITKRGLERITQLPCLKRL 386
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 152/292 (52%), Gaps = 24/292 (8%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H +++ +L++L+ + C QI+D L + + L L L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 153
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL L L+L C + G+ +L G+ + LE L ++ C
Sbjct: 154 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 213
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLH 223
+TD +K +S GLT L+ L +S C ++D+G+ +L + S+ S+ C I +H
Sbjct: 214 KLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMH 273
Query: 224 VFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKF-SKIGSL 280
+ + SL +L+ L++ C V L ++ L L L+L C +SDDG + ++ L
Sbjct: 274 LAMGSL-RLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGL 332
Query: 281 KVLNLG-FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 329
+ LN+G ITD+ L + + L+ L ++L C I GL +T L LK
Sbjct: 333 RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLK 384
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319
Query: 510 NDIKRL 515
+ I R+
Sbjct: 320 DGINRM 325
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFR 114
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL G L+ L
Sbjct: 229 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVS 287
Query: 115 RNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSD 172
+ + Q + A GL L L L C G+ + + + L +LNI C ITD
Sbjct: 288 FCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKG 347
Query: 173 MKPLS-GLTNLKSLQI-SCSKVTDSGIAYLKGL 203
++ ++ L+ L + + C+++T G+ + L
Sbjct: 348 LELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
>gi|395743765|ref|XP_003777984.1| PREDICTED: F-box/LRR-repeat protein 14-like, partial [Pongo abelii]
Length = 296
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 161/286 (56%), Gaps = 25/286 (8%)
Query: 250 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 305
+ +GSL LNL+ C Q++D + ++ + L+VL LG + IT+ L+ + GL L+
Sbjct: 8 VQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLK 67
Query: 306 SLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLES 354
SLNL SC + D G+ +L G+ L+ L L D Q + L+H+S GLT L
Sbjct: 68 SLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRL 127
Query: 355 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGAR 409
+NLSF G ISD L L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F +
Sbjct: 128 LNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDK 186
Query: 410 ITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELI 467
+ D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI
Sbjct: 187 VGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELI 246
Query: 468 S-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+ L+ L +++ +RIT GL + L L+ L L ++T ++
Sbjct: 247 AEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 292
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 161/335 (48%), Gaps = 61/335 (18%)
Query: 72 SGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+GL H +++ +L++L+ + C QI+D L + AQ +K
Sbjct: 1 NGLGHAFVQEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG--- 39
Query: 130 LINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S
Sbjct: 40 ---LEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAE 94
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAAC 246
C L + + C + L H+ L L LLNL C ++ A
Sbjct: 95 GC-------------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAG 140
Query: 247 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGL 301
L LS +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL
Sbjct: 141 LLHLSHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGL 199
Query: 302 TNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLES 354
L+SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 200 DGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDL 258
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 259 YG--CTRITKRGLERITQLPCLKVLNLGLWQMTDS 291
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 110 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 169
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 170 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 229
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 230 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 262
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 263 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 290
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 330 CLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 385
C +++D+ +G ++L GL LE N++ TG+ L GL LKSLNL + R
Sbjct: 22 CKQITDSSLGRIA-QYLKGLEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRH 76
Query: 386 ITDTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGG 433
++D G+ L +T GL L L ++TD ++ R LR +L CGG
Sbjct: 77 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG- 135
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 491
++DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++
Sbjct: 136 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 195
Query: 492 -KPLKNLRSLTLESCKVTANDIKRL 515
+ L L+SL+L SC ++ + I R+
Sbjct: 196 AQGLDGLKSLSLCSCHISDDGINRM 220
>gi|397499401|ref|XP_003820442.1| PREDICTED: F-box/LRR-repeat protein 14 [Pan paniscus]
Length = 561
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 173/317 (54%), Gaps = 28/317 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 242 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 301
Query: 277 IGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 302 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 361
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GLT L +NLSF GISD L L+ + SL+SLNL
Sbjct: 362 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 421
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 422 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 480
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 481 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 540
Query: 495 KNLRSLTLESCKVTAND 511
L+ L L ++T ++
Sbjct: 541 PCLKVLNLGLWQMTDSE 557
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 167/335 (49%), Gaps = 46/335 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 306 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 361
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 362 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 409
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 410 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 468
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLES 354
SL+L SC I D+G+ + GL L +C+ ++D GL HLS LT ++
Sbjct: 469 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDL 523
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 524 YGC--TRITKRGLERITQLPCLKVLNLGLWQMTDS 556
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 304
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 305 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 360
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 361 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 419
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 420 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 479
Query: 510 NDIKRL 515
+ I R+
Sbjct: 480 DGINRM 485
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 375 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 434
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 435 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 494
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 495 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGC--- 526
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 527 --------------------TRITKRGLERITQLPCLKVLNLGLWQMTD 555
>gi|125536975|gb|EAY83463.1| hypothetical protein OsI_38675 [Oryza sativa Indica Group]
Length = 702
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 144/551 (26%), Positives = 235/551 (42%), Gaps = 107/551 (19%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS------------------------- 67
++ +CL + GV + +D + + L +VDLS
Sbjct: 104 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 163
Query: 68 -DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLE-------HLRGLS----NLTSLSFR 114
VTD GL + C L+ L +C +ISD G++ LR L L L
Sbjct: 164 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHDLRSLDISYLKLLGLGMI 223
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------NLKGLMKLESLNI 162
+ T + +K V D+E GL ++ L KLE L +
Sbjct: 224 CGSTATNKAVKCDFDSSLWVDFDMENVQSSELGLTGWLILVGNESLRSISSLEKLEELAM 283
Query: 163 KWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIA-------YLKGLSISSVIFILC 213
C+CI D ++ L G +L+S+ +S C VT G+A +L+ L+ + + +
Sbjct: 284 VCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQKLNAADSLHEM- 342
Query: 214 SMIIRLFCLHVFLTSLQKL----TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 268
FL++L KL T+L L+G V ++ L ++ +L + L++C ++D
Sbjct: 343 --------RQSFLSNLAKLKDTLTVLRLDGLEVASSVLLAIGGCNNLVEIGLSKCNGVTD 394
Query: 269 DGCEKF-SKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGL 325
+G ++ L+V++L +C + + +E L L+SC I ++GL +
Sbjct: 395 EGISSLVTQCSHLRVIDLTCCNSLQQCPDSIAENCKMVERLRLESCSSISEKGLEQIATS 454
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-AR 384
C NL+ I+L+ G++D +LR LA S L L L
Sbjct: 455 C-----------------------PNLKEIDLTDCGVNDAALRPLAKCSELLVLKLGLCS 491
Query: 385 QITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVK 440
I+D GLA ++S G L LDL+ ITD G A L N K ++ L +C +TD G+
Sbjct: 492 SISDKGLAFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDTGLG 551
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NL 497
H+ L LT L L +T + ++ G L+ +++ + AGL L NL
Sbjct: 552 HLGSLEELTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNL 611
Query: 498 RSLTLESCKVT 508
R LT+ C+VT
Sbjct: 612 RQLTISYCQVT 622
>gi|290993148|ref|XP_002679195.1| predicted protein [Naegleria gruberi]
gi|284092811|gb|EFC46451.1| predicted protein [Naegleria gruberi]
Length = 311
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 92/174 (52%)
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ L L++ NEI + H+ + L SLN+ + IGDEG ++ + L L++S
Sbjct: 127 SEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDIS 186
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
D +G G++ +S + L S N+S I + + ++ + L SL++ I D+G+ +
Sbjct: 187 DNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKFI 246
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+ + LT L++ R+ D GA + K LRSL I L D GVK I ++ L
Sbjct: 247 SEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 100/183 (54%), Gaps = 1/183 (0%)
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
E + ++ + L L++SD ++G+ G +H+S + L S+N+ I D + ++ + L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
L++ I D G+ ++ + LT ++ I + GA + + L SL++ + D
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
+GVK I ++ LT LN++ N + D+ +LIS + L SLN+S++ + G++ + +K
Sbjct: 241 SGVKFISEMKQLTSLNIAIN-RVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQ 299
Query: 497 LRS 499
LRS
Sbjct: 300 LRS 302
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 4/197 (2%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
++N+ FNE+ E ++K ++ ++ SL++ IG+ G +++ + L L + + ++
Sbjct: 107 IVNVKFNEMLLELRENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRI 166
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G G + +S + L +++S I D ++ ++ + L S N+ I + G +++ +
Sbjct: 167 GDEGAKFISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQ 226
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
LT LD+ I DSG ++ K L SL I + D G K I ++ L LN+S N
Sbjct: 227 QLTSLDVSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDN-E 285
Query: 459 LTDKTLELISGLTGLVS 475
L D+ ++ IS + L S
Sbjct: 286 LGDEGVKFISEMKQLRS 302
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 94/176 (53%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT L++ + +S + L LN+ ++ D+G + S++ L +L+
Sbjct: 125 FISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLD 184
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I D+ + + + L S N+ IG+ G +++ + L L++SD +G SG++
Sbjct: 185 ISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVK 244
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+S + L S+N++ + D + ++ + L+SLN+ ++ D G+ ++ + L
Sbjct: 245 FISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
++ +S + L S+++S I + + ++ + L SLN+ +I D G ++ + L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
T LD+ I D G ++ K L S I + + G K I ++ LT L++S N ++
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDN-HIG 239
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
D ++ IS + L SLN++ +R+ G + + +K LRSL +
Sbjct: 240 DSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNI 281
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 68/130 (52%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +Q+LTLL++ + + +S + L N++ + + G + S++ L L+
Sbjct: 173 FISEMQQLTLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLD 232
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I D + + + L SLN+ +GDEG ++ + L+ L +SD ++G G++
Sbjct: 233 VSDNHIGDSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVK 292
Query: 345 HLSGLTNLES 354
+S + L S
Sbjct: 293 FISEMKQLRS 302
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 28/189 (14%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I + G +H+ + LTSL+ NN I +G K + + L LD+ G+ +
Sbjct: 141 EIGNVGAKHISEMKQLTSLNIC-NNRIGDEGAKFISEMQQLTLLDISDNHIGDKGVKFIS 199
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
+ +L S NI + I + K +S + L SL +S + + DSG+
Sbjct: 200 EMKQLTSFNIS-DDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVK-------------- 244
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
F++ +++LT LN+ V +S + L LN++ +L D+G +
Sbjct: 245 ------------FISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVK 292
Query: 273 KFSKIGSLK 281
S++ L+
Sbjct: 293 FISEMKQLR 301
>gi|348505743|ref|XP_003440420.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
Length = 403
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 161/286 (56%), Gaps = 25/286 (8%)
Query: 253 LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLN 308
+ SL LNL+ C Q++D + ++ + +L+VL LG + IT+ L+ + GL L+SLN
Sbjct: 119 ISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLN 178
Query: 309 LDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINL 357
L SC + D G+ +L+G+ L+ L L D Q + L+H+S GL L+ +NL
Sbjct: 179 LRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNL 238
Query: 358 SFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITD 412
SF G ISD + L+ ++ L SLNL + I+DTG+ A+ SL LT LD+ F +I D
Sbjct: 239 SFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LTGLDVSFCDKIGD 297
Query: 413 SGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-G 469
AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+
Sbjct: 298 QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADH 357
Query: 470 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
LT L +++ ++IT GL + L L+ L L ++T ++ R
Sbjct: 358 LTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESERVR 403
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 159/306 (51%), Gaps = 30/306 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + +++L+ L +S C ++TDS + YLK L
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNL 148
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALG-------- 254
+ + CS I L + L +L LNL C V+ + LS +
Sbjct: 149 EVLELGG--CSNITNTGLL-LIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCL 205
Query: 255 SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 311
+L L L CQ L+D + SK + LKVLNL F I+D ++HL +T+L SLNL S
Sbjct: 206 TLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRS 265
Query: 312 C-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL 367
C I D G+++L G L L++S ++G L +++ GL L+S++L ISD +
Sbjct: 266 CDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGI 325
Query: 368 -RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN 423
R + + LK+LN+ +ITD GL + LT LT +DL+G +IT G +
Sbjct: 326 NRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPC 385
Query: 424 LRSLEI 429
L+ L +
Sbjct: 386 LKVLNL 391
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 32/323 (9%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDL 138
+++SL+ C ++D GL H ++ +S+L L+ IT + A L NL L+L
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
C+ I G L+ GL +L+SLN++ C ++D + LSG+T + G
Sbjct: 154 GGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMT----------RSAAEG 203
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGS 255
L+ L++ C + L H+ L KL +LNL C ++ A + LS +
Sbjct: 204 CLTLEKLTLQD-----CQKLTDLSLKHIS-KGLNKLKVLNLSFCGGISDAGMIHLSHMTH 257
Query: 256 LFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLD 310
L LNL C +SD G + +GSL++ L++ F ++I D+ L ++ +GL L+SL+L
Sbjct: 258 LCSLNLRSCDNISDTGIMHLA-MGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLC 316
Query: 311 SCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGS 366
SC I D+G+ + + LK L + ++ GL ++ LT L I+L T I+
Sbjct: 317 SCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRG 376
Query: 367 LRKLAGLSSLKSLNLDARQITDT 389
L ++ L LK LNL Q+T++
Sbjct: 377 LERITQLPCLKVLNLGLWQMTES 399
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 149/298 (50%), Gaps = 27/298 (9%)
Query: 68 DVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGM 124
++TD+GL H ++D S+L+ L+ + C QI+D L + + L NL L + IT G+
Sbjct: 105 NLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGL 164
Query: 125 KAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCNCITDSDMK 174
A GL L L+L C + G+ +L G+ + LE L ++ C +TD +K
Sbjct: 165 LLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQDCQKLTDLSLK 224
Query: 175 PLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQK 231
+S GL LK L +S C ++D+G+ +L ++ + S+ C I +H+ + SL +
Sbjct: 225 HISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSL-R 283
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKF-SKIGSLKVLNLG 286
LT L++ C SL+ + Y L+L C +SDDG + ++ LK LN+G
Sbjct: 284 LTGLDVSFCDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIG 341
Query: 287 -FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
ITD+ L + LT L ++L C I GL +T L LK L L Q+ S
Sbjct: 342 QCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTES 399
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 34/255 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ ++ESLNL C G+G + +++ L L C +++D+ +G R
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLG----RIAQY 144
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L+ +T
Sbjct: 145 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGC 204
Query: 399 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L L L ++TD ++ N + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 205 LTLEKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGG-ISDAGMIHLSHMTHLCSLNL 263
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 511 DIKRL--QSRDLPNL 523
I R+ Q +L L
Sbjct: 324 GINRMVRQMHELKTL 338
>gi|363728137|ref|XP_003640464.1| PREDICTED: F-box/LRR-repeat protein 14 [Gallus gallus]
Length = 399
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 152/273 (55%), Gaps = 24/273 (8%)
Query: 265 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 320
Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC + D G+
Sbjct: 128 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 187
Query: 321 NLTGLCN--------LKCLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRK 369
+L G+ L+ L L D Q S L+HL+ GL L +NLSF G ISD L
Sbjct: 188 HLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLH 247
Query: 370 LAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNL 424
L+ +SSL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L
Sbjct: 248 LSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGL 306
Query: 425 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-S 481
RSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +
Sbjct: 307 RSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT 366
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
RIT GL + L L+ L L ++T ++ R
Sbjct: 367 RITKRGLERITQLPCLKVLNLGLWEMTESEKVR 399
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 170/369 (46%), Gaps = 82/369 (22%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 85 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 144
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ SC
Sbjct: 145 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLR------------------------SCRH 180
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
++D GI +L G++ S+ EGC
Sbjct: 181 LSDVGIGHLAGMTRSAA-----------------------------EGC----------- 200
Query: 252 ALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 308
LG L L L CQ LSD + ++ +G L+ LNL F I+D L+HL +++L SLN
Sbjct: 201 -LG-LEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLN 258
Query: 309 LDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISD 364
L SC I D G+++L G L L++S +VG L +++ GL L S++L ISD
Sbjct: 259 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 318
Query: 365 -GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRN 420
G R + + L++LN+ +ITD GL + L+ LT +DL+G RIT G +
Sbjct: 319 EGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQ 378
Query: 421 FKNLRSLEI 429
L+ L +
Sbjct: 379 LPCLKVLNL 387
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ ++ESLNL C G+G + ++ L +L C +++D+ +G ++L G
Sbjct: 85 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKG 143
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 144 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 199
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 452
GL L L +++D +L R LR L + CGG ++DAG+ H+ +SSL LN
Sbjct: 200 CLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLN 258
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L LRSL+L SC ++
Sbjct: 259 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 318
Query: 510 NDIKRL 515
I R+
Sbjct: 319 EGINRM 324
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 70/302 (23%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDG----------GLEHLR---- 103
S++LSG ++TD+GL H + + S+L+SL+ + C QI+D GLE L
Sbjct: 93 SLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 152
Query: 104 -------------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCT 142
GL L SL+ R ++ G+ AG+ + L +L L+ C
Sbjct: 153 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 212
Query: 143 RIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAY 199
++ L +L +GL +L LN+ +C I+D+ + LS +++L+SL + SC ++D+GI +
Sbjct: 213 KLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMH 272
Query: 200 LK-------GLSIS--------SVIFI-----------LCSMIIRLFCLHVFLTSLQKLT 233
L GL +S S+ +I LCS I ++ + + L
Sbjct: 273 LAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLR 332
Query: 234 LLNLEGC-PVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 290
LN+ C +T L+ ++ L L ++L C +++ G E+ +++ LKVLNLG E+
Sbjct: 333 TLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWEM 392
Query: 291 TD 292
T+
Sbjct: 393 TE 394
>gi|290972751|ref|XP_002669114.1| predicted protein [Naegleria gruberi]
gi|284082657|gb|EFC36370.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 111/218 (50%), Gaps = 1/218 (0%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
+ L + +N I E +H+ + L +L++ + + +EG ++ L LKCL++ +G
Sbjct: 34 ITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIG 93
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
+G +++SG+ L +++ I + + ++ + L L + I G ++ L
Sbjct: 94 KNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRK 153
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
LTHLD+ I G+ Y+ L L I + + GVKHI +++ LT L++ N +
Sbjct: 154 LTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDN-EI 212
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
+ + ++ ISG+ L +L++S + I G + L +K L
Sbjct: 213 SAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQL 250
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 114/205 (55%), Gaps = 4/205 (1%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
+KG+T L ++N +S G+ EG ++++ + L L++ ++ + G +++S L L+ +++
Sbjct: 31 MKGITTL-TINYNSIGV--EGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDI 87
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
I + ++G+ L L++ I + G +++ + LTHL + I GA Y
Sbjct: 88 GSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKY 147
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
+ + L L+I + G K+I +++ LT+LN+ N ++ ++ ++ IS + L L+
Sbjct: 148 ISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNN-DIGNEGVKHISEMNQLTRLD 206
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTL 502
+ ++ I++ G++++ +K L +L +
Sbjct: 207 IGDNEISAEGVKYISGMKQLTNLDI 231
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 6/227 (2%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L+ +TNL L G D L+NL + + L ++ +G G H+S + L ++++
Sbjct: 8 LQNVTNL--LFKREIGAFDYKLLNL--MKGITTLTINYNSIGVEGAMHISKMEQLTNLDI 63
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
+ + + + ++ L LK L++ + I G ++ + LT LD+F I + GA
Sbjct: 64 CNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKS 123
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
+ K L L+I + G K+I L LT L++S N ++ K + IS + L LN
Sbjct: 124 ISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSN-DIGAKGSKYISEMNQLTILN 182
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 523
+ N+ I + G++H+ + L L + +++A +K + + L NL
Sbjct: 183 IYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNL 229
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 97/196 (49%), Gaps = 2/196 (1%)
Query: 260 NLNRCQ--LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
NL+ C L ++G + S++ LK L++G N I ++ G+ L L++ + I +E
Sbjct: 60 NLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEE 119
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
G +++ + L L+++ +G+ G +++S L L +++S I + ++ ++ L
Sbjct: 120 GAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQLT 179
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
LN+ I + G+ ++ + LT LD+ I+ G Y+ K L +L+I + D
Sbjct: 180 ILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDE 239
Query: 438 GVKHIKDLSSLTLLNL 453
G + + + L L
Sbjct: 240 GAQFLSQMKQLIYLEF 255
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 2/209 (0%)
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
+H+ + +++LT L++ + +S L L L++ + +G + S + L
Sbjct: 49 AMHI--SKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQL 106
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L++ N I +E + + L L + IG EG ++ L L L++S +G+
Sbjct: 107 TRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIGA 166
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G +++S + L +N+ I + ++ ++ ++ L L++ +I+ G+ ++ + L
Sbjct: 167 KGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGMKQL 226
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEI 429
T+LD+ I D GA +L K L LE
Sbjct: 227 TNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 28/236 (11%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G H+ + LT+L N+ + +G K + L L LD+ + G + G+ +L
Sbjct: 48 GAMHISKMEQLTNLDIC-NSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQL 106
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
L+I + N I + K +S + L L+I+ + + G Y+
Sbjct: 107 TRLDI-FNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYI----------------- 148
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
+ L+KLT L++ + A +S + L LN+ + ++G + S++
Sbjct: 149 ---------SQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEM 199
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
L L++G NEI+ E + ++ G+ L +L++ IGDEG L+ + L LE
Sbjct: 200 NQLTRLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
>gi|290976253|ref|XP_002670855.1| predicted protein [Naegleria gruberi]
gi|284084418|gb|EFC38111.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 3/238 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++++++LT LN++ V S+S + L +L+++ + D+G + ++ L LN+
Sbjct: 46 ISTMKQLTSLNIKNNSVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNI 105
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+N+IT ++ K + L LN+ S IG+EG+ N++GL L L++ G+ G +
Sbjct: 106 SYNQITSNGMIPFKEMKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKS 165
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S LTNL + I + + ++ L + LNL + G ++ + LTHL +
Sbjct: 166 ISQLTNLTCLYCCSNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYM 225
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
I D GA L +NL+ L I G ++ V+ I +L T + NL D+T
Sbjct: 226 DSNEIGDDGAEDLCGLENLKVLSIRGNNISYDMVQAIHELGKFT---VESEGNLFDET 280
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 1/265 (0%)
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
+ L L+L QL D+ K S+ L L + NEI + + L SLN+ +
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
+G EG +++ + L L++S +G G + + L L ++N+S+ I+ +
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKE 120
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
+ L LN+ + +I + G+ ++ L+ LT LD+ G + GA + NL L C
Sbjct: 121 MKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSN 180
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
+ + G K I L +T LNL N D + IS + L L + ++ I G L
Sbjct: 181 NIREEGAKSISQLEKVTCLNLCVNYLHADGA-KHISQMKQLTHLYMDSNEIGDDGAEDLC 239
Query: 493 PLKNLRSLTLESCKVTANDIKRLQS 517
L+NL+ L++ ++ + ++ +
Sbjct: 240 GLENLKVLSIRGNNISYDMVQAIHE 264
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 34/282 (12%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ ++LT L +E + S+S + L LN+ + +G S + L L++
Sbjct: 22 ISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNNSVGVEGAHSISNMTRLTHLDI 81
Query: 286 GFNEITDE---CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
N I DE + LK LTNL N+ I G++ + L L + ++G+ G
Sbjct: 82 SLNNIGDEGAKIICQLKQLTNL---NISYNQITSNGMIPFKEMKQLIILNVGSNRIGNEG 138
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ ++S GLS L L++ + G +++ LT LT
Sbjct: 139 IENIS------------------------GLSQLTELDIGGCDFGNEGAKSISQLTNLTC 174
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L I + GA + + + L +C L G KHI + LT L + N + D
Sbjct: 175 LYCCSNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSN-EIGDD 233
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
E + GL L L++ + I+ ++ + L T+ES
Sbjct: 234 GAEDLCGLENLKVLSIRGNNIS---YDMVQAIHELGKFTVES 272
>gi|224144082|ref|XP_002325179.1| predicted protein [Populus trichocarpa]
gi|222866613|gb|EEF03744.1| predicted protein [Populus trichocarpa]
Length = 66
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
+GLT LVSLNVSNS IT GLR+LKPLKNLRS++LESCKVTA+ IK+LQS +LPNLVS
Sbjct: 9 TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQSTELPNLVS 66
>gi|260804809|ref|XP_002597280.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
gi|229282543|gb|EEN53292.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
Length = 398
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 170/348 (48%), Gaps = 66/348 (18%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+ G++N+ SL +S C +TD G++ H F + LT
Sbjct: 87 VQGMSNIVSLNLSGCYNLTDIGLS------------------------HAFTQDVPSLTE 122
Query: 235 LNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG---------SLKVLN 284
LNL C +T + L ++ + NL R L GC + G L+ LN
Sbjct: 123 LNLSLCKQITDSSLGRIAQ----YLKNLERLDLG--GCCNITNTGLLLCAWGLLKLRYLN 176
Query: 285 L-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
L I+D + HL G++ + EG ++L LC C +L+D L
Sbjct: 177 LRSCRHISDVGIGHLSGISKNAA----------EGCLHLEHLCLQDCQKLTDL-----AL 221
Query: 344 RHLS-GLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG- 399
+H+S GL L+S+NLSF GISDG + LA +SSLK LNL + I+D G+A L +
Sbjct: 222 KHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSAT 281
Query: 400 LTHLDL-FGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQN 456
++HLD+ F ++ DS ++ + +L SL + ++D G+ + ++ + LT L++ Q
Sbjct: 282 ISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQC 341
Query: 457 CNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
+TDK L LI+ LT L ++++ ++IT+AGL + L L L L
Sbjct: 342 YKITDKGLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPRLSVLNL 389
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 150/319 (47%), Gaps = 38/319 (11%)
Query: 81 SNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLD 137
SN+ SL+ + C ++D GL H + + +LT L+ IT + A L NL +LD
Sbjct: 91 SNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRIAQYLKNLERLD 150
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L C I G L+ GL+KL LN++ C I+D + LSG+ SK
Sbjct: 151 LGGCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDVGIGHLSGI----------SKNAAE 200
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG-CPVTAACLDSLSALG 254
G +L+ L + C + L HV LQ+L LNL C ++ + L+ +
Sbjct: 201 GCLHLEHLCLQD-----CQKLTDLALKHVS-KGLQRLKSLNLSFCCGISDGGMMYLAKMS 254
Query: 255 SLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLD 310
SL LNL C +SD G + ++ L++ F +++ D L H+ GL +L SL+L
Sbjct: 255 SLKELNLRSCDNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLG 314
Query: 311 SCGIGDEGL-------VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGI 362
SC I DEGL LT L +C +++D +G LT L +I+L T I
Sbjct: 315 SCNISDEGLNRMVRSMHELTTLDIGQCYKITDKGLGLIA----DNLTQLTNIDLYGCTKI 370
Query: 363 SDGSLRKLAGLSSLKSLNL 381
+ L ++ L L LNL
Sbjct: 371 TTAGLERIMQLPRLSVLNL 389
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 31/199 (15%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K L+SL+ +FC ISDGG+ +L +S+L L+ R + I+ G+
Sbjct: 216 LTDLALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHL 275
Query: 128 A-GLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + LD+ C ++ + GL L SL++ CN + + + + L +
Sbjct: 276 ADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTT 335
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PV 242
L I C K+TD G+ + +L +LT ++L GC +
Sbjct: 336 LDIGQCYKITDKGLG-------------------------LIADNLTQLTNIDLYGCTKI 370
Query: 243 TAACLDSLSALGSLFYLNL 261
T A L+ + L L LNL
Sbjct: 371 TTAGLERIMQLPRLSVLNL 389
>gi|417399805|gb|JAA46888.1| Putative f-box/lrr-repeat protein 14 [Desmodus rotundus]
Length = 368
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 169/307 (55%), Gaps = 28/307 (9%)
Query: 235 LNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FN 288
LNL GC +T L + + SL LNL+ C Q++D + ++ + L+VL LG +
Sbjct: 63 LNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCS 122
Query: 289 EITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ- 337
IT+ L+ + GL L+SLNL SC + D G+ +L G+ L+ L L D Q
Sbjct: 123 NITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK 182
Query: 338 VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA-- 392
+ L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL + I+DTG+
Sbjct: 183 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 242
Query: 393 ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLT 449
A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D G+ + ++ + L
Sbjct: 243 AMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLR 301
Query: 450 LLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 507
LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L L+ L L ++
Sbjct: 302 TLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQM 361
Query: 508 TANDIKR 514
T ++ R
Sbjct: 362 TDSEKVR 368
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 168/331 (50%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 113
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +
Sbjct: 114 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT----------R 163
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
G L+ L++ C + L H+ L L LLNL C ++ A L L
Sbjct: 164 SAAEGCLGLEQLTLQD-----CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 217
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L+
Sbjct: 218 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLK 276
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+L SC I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 277 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG-- 333
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+TD+
Sbjct: 334 CTRITKRGLERITQLPCLKVLNLGLWQMTDS 364
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + ++ L L C +++D+ +G ++L G
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIA-QYLKG 112
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 113 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 168
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 169 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 227
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++
Sbjct: 228 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 287
Query: 510 NDIKRL 515
+ I R+
Sbjct: 288 DGINRM 293
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 183 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 242
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 243 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 302
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 303 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 335
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 336 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTD 363
>gi|334117579|ref|ZP_08491670.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
gi|333460688|gb|EGK89296.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
Length = 516
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 144/433 (33%), Positives = 213/433 (49%), Gaps = 45/433 (10%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
G + L L+NLT L N A G +K A L NL +L+L G + L L
Sbjct: 100 GDITPLASLTNLTVLDLGFN----ALGDIKPLASLTNLTRLNL--FGNQIGDIKPLASLT 153
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
KL L + N I D+KPL+ LTNL L +S ++V D I L L+ + + + ++
Sbjct: 154 KLTELTLN-NNKI--GDIKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNV 208
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
I + L SL LT L+L+G + + L++L +L L+L+ Q+ D
Sbjct: 209 IGDIKP----LASLTNLTRLDLDGNVI--GDIKPLASLTNLSSLDLDDNQIGD-----IK 257
Query: 276 KIGSL-KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+ SL ++ L I + L LTNL L+LD IGD + L L NL L LS
Sbjct: 258 PLASLTNLMGLDLRRIVIGDIKPLASLTNLTDLSLDDNQIGD--IKPLASLTNLTRLVLS 315
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
Q+ ++ L+ LTNL S++LS I G ++ LA L++L SL+L+ +I D + L
Sbjct: 316 SNQI--RDIKPLASLTNLSSLDLSGNVI--GDIKPLASLTNLSSLDLNNNKIGD--IKPL 369
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
SLT LT L L G I D L + NL SL + G + D +K + L++L+ L L
Sbjct: 370 ASLTKLTELTLSGNVIGD--IKPLASLTNLSSLVLFGNVIGD--IKPLASLTNLSSLVLD 425
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
N + D ++ ++ LT L L +S++ I ++ L L NL SL L + DIK
Sbjct: 426 GNV-IGD--IKALASLTNLAGLFLSSNVI--GDIKPLASLTNLSSLDLSDNHI--GDIKP 478
Query: 515 LQSRDLPNLVSFR 527
L S L NL+
Sbjct: 479 LAS--LTNLIELH 489
>gi|347547841|ref|YP_004854169.1| putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346980912|emb|CBW84831.1| Putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 798
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 137/471 (29%), Positives = 211/471 (44%), Gaps = 93/471 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ ++ DL + V+D+ + D + SL+ + S G+E+L +N+T L F N
Sbjct: 54 AEVVKTDLGKATVSDT--VTQTDLDGITSLEADRKGITSIAGVEYL---NNVTQLDFSYN 108
Query: 117 NAITAQGMKAFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ L NL KL L L L+ L L L + + N ITD + P
Sbjct: 109 Q------ITDLTPLANLTKLTSLVMNNNQIADLTPLQNLTSLTELTL-FYNKITD--VAP 159
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ LTNL +L I+ ++++D +T + LT
Sbjct: 160 LANLTNLTNLAITDNEISD-------------------------------VTPIGNLT-- 186
Query: 236 NLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
NLEG + D L+ L L LNL+R +++D +K+ +L+ L+L N+ +D
Sbjct: 187 NLEGLSIGNKVTDIKPLANLTKLERLNLSRNKITD--ISPVAKLINLQSLSLDNNQFSD- 243
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L LTNL L+L S + D G L L NLK L L D Q+ S L +S LTNL
Sbjct: 244 -LTPLGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLMDNQI--SNLAPISNLTNLT 298
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+NLS ISD L+ ++ L++L L + Q+ D ++ ++SL L L L+ +I+D
Sbjct: 299 DLNLSTNQISD--LKPISNLTNLTVLQVPTNQLED--ISPISSLPNLEFLTLYTNQISD- 353
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ L N L+ L ++D V I +L+SL L+ N IS LT L
Sbjct: 354 -LSPLENLTKLKQLFFYDNKVSD--VSPIANLTSLQELSAGTNQ---------ISDLTPL 401
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
L +R+T GL + KVT+ +K + +PN V
Sbjct: 402 AKL----TRLTQLGL--------------DKQKVTSQPVKYQSNLVVPNAV 434
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 190/402 (47%), Gaps = 52/402 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+++ +D S + +TD L L + + L SL N QI+D L L+ L++LT L+ N
Sbjct: 98 NNVTQLDFSYNQITD--LTPLANLTKLTSLVMNNN-QIAD--LTPLQNLTSLTELTLFYN 152
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ L NL D E T I G L NL+GL N +TD +K
Sbjct: 153 KITDVAPLANLTNLTNLAITDNEISDVTPI-GNLTNLEGL--------SIGNKVTD--IK 201
Query: 175 PLSGLTNLKSLQISCSKVTD-SGIAY---LKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
PL+ LT L+ L +S +K+TD S +A L+ LS+ + F L L + LT+L
Sbjct: 202 PLANLTKLERLNLSRNKITDISPVAKLINLQSLSLDNNQF------SDLTPLGI-LTNLT 254
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
+L+L + + + +L++L +L LNL Q+S+ S + +L LNL N+I
Sbjct: 255 ELSLYSNH-----LSDIGTLASLTNLKKLNLMDNQISN--LAPISNLTNLTDLNLSTNQI 307
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
+D L + LTNL L + + + E + ++ L NL+ L L Q+ S L L LT
Sbjct: 308 SD--LKPISNLTNLTVLQVPTNQL--EDISPISSLPNLEFLTLYTNQI--SDLSPLENLT 361
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L+ + +SD + +A L+SL+ L+ QI+D L L LT LT L L ++
Sbjct: 362 KLKQLFFYDNKVSD--VSPIANLTSLQELSAGTNQISD--LTPLAKLTRLTQLGLDKQKV 417
Query: 411 TDSGAAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLS 446
T Y N KN+ I ++D G D++
Sbjct: 418 TSQPVKYQSNLVVPNAVKNVTGALINPATISDNGTYTNPDIT 459
>gi|299065269|emb|CBJ36437.1| leucine-rich-repeat type III effector protein (GALA8) [Ralstonia
solanacearum CMR15]
Length = 524
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 179/408 (43%), Gaps = 34/408 (8%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR----RNNAITAQGMKAFAGLINLVKL 136
++++ +D + C S + GL L L ++ +T+ G +A A L L
Sbjct: 103 ASVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSL 162
Query: 137 DLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
DL R +I G L L +LN+ N I + L+ L +L + +K+ D+
Sbjct: 163 DL-RGNKITDLGAQALATSRTLTTLNLD-TNTIGAKGAQALAASRTLTTLNLRGNKIEDA 220
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS 255
G + L+ S+ LT L+ EGC + A + +L+A S
Sbjct: 221 GA---QALAASTT-----------------------LTSLSAEGCRIGLAGVQALAASRS 254
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
L LNL + D G + + +L L+L N+I D + L L SL +D C IG
Sbjct: 255 LTTLNLAGNNIDDAGAQALAASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIG 314
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
G L +L L +S VG +G + L+ L SI I + LA S
Sbjct: 315 AAGAQALATSDSLAALNISHNPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDS 374
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
L SL+LDA QI D G AL + LT L++ I D G L + L SL++ +
Sbjct: 375 LTSLDLDANQIGDDGAQALATSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIG 434
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
V+ + + +LT LN+S N N+ D +L++ L SLNV SRI
Sbjct: 435 ITSVQALAENCTLTSLNVSGN-NIGDAGAQLLAANRSLTSLNVCWSRI 481
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 172/373 (46%), Gaps = 7/373 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DL G+ +TD G L L +L+ + I G + L LT+L+ R N
Sbjct: 158 TLTSLDLRGNKITDLGAQALATSRTLTTLNLDTNT-IGAKGAQALAASRTLTTLNLR-GN 215
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G +A A L L E C G+ L L +LN+ N I D+ + L+
Sbjct: 216 KIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLA-GNNIDDAGAQALA 274
Query: 178 GLTNLKSLQISCSKVTDSGIAYLK-GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L +L +S +K+ D+G L +++S+ C I TS L LN
Sbjct: 275 ASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCE--IGAAGAQALATS-DSLAALN 331
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
+ PV A +L+ +L + CQ+ G + + SL L+L N+I D+
Sbjct: 332 ISHNPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQ 391
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L L SLN+ IGD G+ L L+ L++SD ++G + ++ L+ L S+N
Sbjct: 392 ALATSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLN 451
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
+S I D + LA SL SLN+ +I D G AL + LT LD+ RI ++GA
Sbjct: 452 VSGNNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVNRIGEAGAR 511
Query: 417 YLRNFKNLRSLEI 429
L + L SL++
Sbjct: 512 ALVANRFLVSLKM 524
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 119/441 (26%), Positives = 192/441 (43%), Gaps = 25/441 (5%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG------VNDKWMDVIASQGS 57
R IS ++ N + + +T +++ L L G YP V + + + + +
Sbjct: 48 RSISHELHN--ITNATITGLTI--TDPSGLNRLSRGDYPKLQSVRLVGNFTVQDLKALPA 103
Query: 58 SLLSVDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHL--RGLS---NLTSL 111
S+ +DLSG + T S + L L + I D G+ + R L+ LTSL
Sbjct: 104 SVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLV-IQDAGMTSVGARALAASDTLTSL 162
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
R N IT G +A A L L+L+ T G L L +LN++ N I D+
Sbjct: 163 DLR-GNKITDLGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLR-GNKIEDA 220
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL--CSMIIRLFCLHVFLTSL 229
+ L+ T L SL ++ G+A ++ L+ S + L I S
Sbjct: 221 GAQALAASTTLTSLSAEGCRI---GLAGVQALAASRSLTTLNLAGNNIDDAGAQALAAS- 276
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ LT L+L + A +L+A +L L ++ C++ G + + SL LN+ N
Sbjct: 277 RTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNP 336
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+ D L L S+ C IG G L +L L+L Q+G G + L+
Sbjct: 337 VGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALATS 396
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
L S+N+ + I D ++ LA L+SL++ +I T + AL LT L++ G
Sbjct: 397 NTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSGNN 456
Query: 410 ITDSGAAYLRNFKNLRSLEIC 430
I D+GA L ++L SL +C
Sbjct: 457 IGDAGAQLLAANRSLTSLNVC 477
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 28/250 (11%)
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-----NLKCLELSDTQVGS 340
G N + + GL L L + S I D G+ ++ L L+L ++
Sbjct: 112 GCNATSSTSATSVAGLKYLAKLPITSLVIQDAGMTSVGARALAASDTLTSLDLRGNKITD 171
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G + L+ L ++NL I + LA +L +LNL +I D G AL + T L
Sbjct: 172 LGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLRGNKIEDAGAQALAASTTL 231
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN---- 456
T L G RI +G L ++L +L + G + DAG + + +LT L+LS N
Sbjct: 232 TSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTTLDLSANKIGD 291
Query: 457 -------------------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
C + + ++ L +LN+S++ + AG + L + L
Sbjct: 292 AGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDAGAQALAICRTL 351
Query: 498 RSLTLESCKV 507
S+ + C++
Sbjct: 352 TSIKAKDCQI 361
>gi|290975915|ref|XP_002670687.1| predicted protein [Naegleria gruberi]
gi|284084248|gb|EFC37943.1| predicted protein [Naegleria gruberi]
Length = 402
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 149/333 (44%), Gaps = 16/333 (4%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
+W N I L LK L + C +L+ + SV F + ++ F
Sbjct: 75 QWLNVI----------LERLK-LHMKCKNNVKLNGEFLQNIETLSVNFRIKGVV---FNC 120
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
VF + LT L + + +SAL L LN++ + ++G + K+ L
Sbjct: 121 GVFDLMSKSLTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTY 180
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L++ N+I +++ L L SL + S I +EG +L L NL LE + G+ G
Sbjct: 181 LDISKNDIRSNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEG 240
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLT 401
+H+S + L ++N++ I D + ++ + L LN+ + +ITD L LT
Sbjct: 241 AKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLT 300
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L + I + Y+ +NL L+I G + G K+I ++ LT L + N L +
Sbjct: 301 ELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEIHTNS-LGN 359
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
+ + IS + L L + ++ ++ +H++ +
Sbjct: 360 EGAKHISTMKELEYLYLCDNDVSVEVKQHIREI 392
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 2/213 (0%)
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L +L + I ++G +++ L L L +S + G +++ L L +++S I
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
++ L L SL + + I + G A L LT LT L+ GA ++ K
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSR 482
L +L I + D G K+I ++ LT+LN+ N +TD+ E L L L + ++
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSN-EITDRVNFENFGQLNQLTELYIEDNS 308
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
I + +++ L+NL L + V A K +
Sbjct: 309 IQTNACKYISQLQNLNLLDISGNNVDAEGAKYI 341
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 55/290 (18%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRIHGGLVNLK 152
I + G +H+ L LT L+ NN I +G K L L LD+ + R +G L
Sbjct: 140 IENDGAKHISALKQLTLLNISSNN-IEEEGAKYIGKLEKLTYLDISKNDIRSNGALY--- 195
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
+S L L SL IS + + + G A+L
Sbjct: 196 -----------------------ISELKQLTSLVISSNNIDEEGAAHL------------ 220
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+ LT+L +L + E A +S + L LN+N + D+G +
Sbjct: 221 -----------IKLTNLTELETVRNE---FGAEGAKHISEMKQLINLNINDNFIGDEGAK 266
Query: 273 KFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
S++ L +LN+G NEITD + L L L ++ I ++ L NL L
Sbjct: 267 YISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLL 326
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++S V + G +++S + L + + + + + ++ + L+ L L
Sbjct: 327 DISGNNVDAEGAKYISQMNQLTELEIHTNSLGNEGAKHISTMKELEYLYL 376
>gi|449134939|ref|ZP_21770403.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448886418|gb|EMB16825.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 341
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 5/229 (2%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G ++ L L L+ L I + D+ K +SGL L ++ + VTD G + L L+
Sbjct: 108 GTVLRLAALPNLKRLRI-YGKEFDDAKAKSISGLPALIAVTFQDTSVTDDGASVLAELNE 166
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
I ++ S + + + ++L KLT LNL G +T + +S L L L L
Sbjct: 167 LQDISLMNSPVTDKTLIAI--STLPKLTKLNLRGTKITGEAFEPISKL-PLEDLELAETD 223
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
+G + I L+ +NL +I +E L +G T+L +LN+D+C I +E + +
Sbjct: 224 FGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTALNIDNCPAITEEAIPVIVS 283
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
L +LK L L T V L L L LE++ ++ G+ +G +KL +
Sbjct: 284 LPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGLEEGPAKKLEAM 332
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 4/251 (1%)
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
D+ + L S S +F+ + L L +L L L + G A S+S L
Sbjct: 83 DNAVKLLSKTSTVSELFMPAAAWADGTVLR--LAALPNLKRLRIYGKEFDDAKAKSISGL 140
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+L + ++DDG +++ L+ ++L + +TD+ L+ + L L LNL
Sbjct: 141 PALIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTK 200
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
I E ++ L L+ LEL++T G G+ ++ + LE +NL T I + SL+ G
Sbjct: 201 ITGEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGK 259
Query: 374 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
+SL +LN+D IT+ + + SL L L L + L+ + L +L +
Sbjct: 260 TSLTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNL 319
Query: 433 GLTDAGVKHIK 443
GL + K ++
Sbjct: 320 GLEEGPAKKLE 330
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 2/260 (0%)
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D+ + SK ++ L + D ++ L L NL+ L + D +++GL
Sbjct: 83 DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L + DT V G L+ L L+ I+L + ++D +L ++ L L LNL +IT
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
++ L L L+L G + N + L + + + + +K + +S
Sbjct: 203 GEAFEPISKLP-LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
LT LN+ +T++ + +I L L L++ + + L LKPL+ L +L + + +
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGL 321
Query: 508 TANDIKRLQSRDLPNLVSFR 527
K+L++ PNL F
Sbjct: 322 EEGPAKKLEAM-FPNLKRFE 340
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L + L S VTD LI + L L+ +I+ E + L L L +
Sbjct: 166 ELQDISLMNSPVTDKTLIAISTLPKLTKLNLR-GTKITGEAFEPISKLP-LEDLELAETD 223
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+GM A A + L K++L + L +G L +LNI C IT+ + +
Sbjct: 224 -FGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTALNIDNCPAITEEAIPVIV 282
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
L +LK L + + V + LK L +F+
Sbjct: 283 SLPHLKLLHLGKTSVAPDALPQLKPLQELETLFV 316
>gi|428317856|ref|YP_007115738.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
gi|428241536|gb|AFZ07322.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
Length = 1221
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 156/297 (52%), Gaps = 33/297 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +NL+ L+ + QI+D ++ L GL+NL L+ N +K +GL NL L
Sbjct: 104 LSKFTNLRKLNLSIN-QITD--VQPLSGLTNLRYLTLTSNQI---SDVKPLSGLTNLTLL 157
Query: 137 DLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L +V++K L K L LN+ N ITD ++PLSGLTNL+SL ++ ++++
Sbjct: 158 YL-----ADNQIVDIKPLSKFTNLRRLNLS-VNQITD--VQPLSGLTNLRSLVLNFNQIS 209
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
D + L GL+ + +F+ + I+ + L LT+L L+L + + VT LS +
Sbjct: 210 D--VKPLSGLTNLTELFLEANQIVDVKPL-AGLTNLTGLSLASNQIVDVT-----PLSTM 261
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
L +L L+ +++D + S + +L VL L N+I D + L GLTNL +L+L
Sbjct: 262 TELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLPTLDLSRNQ 317
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
I D L GL NL L+LS Q+ + L+GL L +++LS I DG +L
Sbjct: 318 IADA--TPLAGLTNLTNLDLSRNQIADAT--PLAGLVYLTTLDLSRNQIPDGEAERL 370
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 145/305 (47%), Gaps = 42/305 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNL--------- 151
+ L+NLT LS RN + + + F L L L + + T + GL NL
Sbjct: 83 KTLTNLTELSLIRNQIVDIKPLSKFTNLRKL-NLSINQITDVQPLSGLTNLRYLTLTSNQ 141
Query: 152 ----KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGL 203
K L L +L + + D+KPLS TNL+ L +S +++TD SG+ L+ L
Sbjct: 142 ISDVKPLSGLTNLTLLYLADNQIVDIKPLSKFTNLRRLNLSVNQITDVQPLSGLTNLRSL 201
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
++ F S + L+ L LT L LE + + L+ L +L L+L
Sbjct: 202 VLN---FNQISDVKP-------LSGLTNLTELFLEANQIV--DVKPLAGLTNLTGLSLAS 249
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
Q+ D S + L L L N+I D + L GLTNL L L S I D + L+
Sbjct: 250 NQIVD--VTPLSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLS 303
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
GL NL L+LS Q+ + L+GLTNL +++LS I+D + LAGL L +L+L
Sbjct: 304 GLTNLPTLDLSRNQIADAT--PLAGLTNLTNLDLSRNQIADAT--PLAGLVYLTTLDLSR 359
Query: 384 RQITD 388
QI D
Sbjct: 360 NQIPD 364
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 35/164 (21%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+SL NF QISD ++ L GL+NLT L
Sbjct: 171 SKFTNLRRLNLSVNQITD--VQPLSGLTNLRSLVLNFN-QISD--VKPLSGLTNLTELFL 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITD- 170
N + +K AGL NL L L +V++ L + LN + N I D
Sbjct: 226 EANQIV---DVKPLAGLTNLTGLSL-----ASNQIVDVTPLSTMTELNFLYLSGNKIADV 277
Query: 171 -------------------SDMKPLSGLTNLKSLQISCSKVTDS 195
+D+KPLSGLTNL +L +S +++ D+
Sbjct: 278 KPLSGLTNLIVLFLASNQIADVKPLSGLTNLPTLDLSRNQIADA 321
>gi|18413537|emb|CAD21866.1| hypothetical leucine-rich repeat protein 1 (LRRP1) [Trypanosoma
brucei]
Length = 1393
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 135/511 (26%), Positives = 218/511 (42%), Gaps = 59/511 (11%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 555 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 612
Query: 92 IQISDGGLEHLRGLSNLTSL-------------------SFRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 613 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 667
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 668 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 725
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFIL--CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
+ ++V D+ + + S V L C I + + SL L LN++ C
Sbjct: 726 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISA----IASLTALEELNIDNCCNV 781
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 302
+ + L L L+ + +D+ S+ SL LNL F +ITD + L +T
Sbjct: 782 TSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDITD--VTALSKIT 839
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
LE LNLD C +G+ L L + L + + +G + S L N +S+
Sbjct: 840 MLEELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLER 899
Query: 363 SDG--SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
S G S++ L+ +++L+ L LD AR++ + S + L L + + TD +
Sbjct: 900 SRGRISVKALSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTK 954
Query: 420 NF---KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
N K+LRSL + +TD V +N CN K E + L L
Sbjct: 955 NISESKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNC---CNGIRKGWESLGKLPLLRV 1011
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
+S+++IT+ + L K L L CK
Sbjct: 1012 AILSDTKITAKDIACLSSCKKLVKLKFFRCK 1042
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 139/579 (24%), Positives = 230/579 (39%), Gaps = 139/579 (24%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG V D+ L L DC +L+ L+ ++ IQ++D +E L RG+
Sbjct: 299 LDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTDINPLSNATAIEELNLNGCRRITRGI 358
Query: 106 SNLTSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLD 137
+ +L R +N M + ++ L +L+
Sbjct: 359 GVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELN 418
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKS 184
+++C I G+ L L L LNIK + + +M+ ++GL+N+++
Sbjct: 419 IQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEA 478
Query: 185 LQ--ISCSKVT-------DSGI------AYLKGLSISSV--------IFILCSMIIRLFC 221
L ++ K++ D+GI LK L +S L ++ L
Sbjct: 479 LANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL 538
Query: 222 LHVF-------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
H + ++SL+ L LNL C A +++ L L L+ ++D F
Sbjct: 539 SHCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 598
Query: 275 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTGLC--NL 328
S +L L+L F N++ D + L +T LE LNLDSC +GL L LC N+
Sbjct: 599 SNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNI 656
Query: 329 KCLELSDTQV-----GSSGLR-------------HLSGLTNLESINLSFTGISDGSLRKL 370
K ++L D+ + G+S +R LS L LE +NL + + L
Sbjct: 657 KGVQLEDSVIVSLGNGNSFVRLSLENCKGFGDVAPLSNLVTLEELNLHYCDKVTSGMGTL 716
Query: 371 AGLSSLKSLNLDARQITD------------------------TGLAALTSLTGLTHLDLF 406
L L+ L+L Q+ D T ++A+ SLT L L++
Sbjct: 717 GRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNID 776
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
SG LR + D ++H+ + SL LNL+ ++TD T
Sbjct: 777 NCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDITDVT--A 834
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+S +T L LN+ G+ L L R L+++ C
Sbjct: 835 LSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 873
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 114/444 (25%), Positives = 190/444 (42%), Gaps = 62/444 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+KL L++ CN ITD+ P+S L+ L+ L +S +T GI L
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLSALEELNLSNCHIT-KGIGTL------------- 290
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSD---- 268
M++RL +L+L G PV CL L GSL LN++ R QL+D
Sbjct: 291 GMLLRL-------------RILDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTDINPL 337
Query: 269 -----------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
+GC + ++ + L+VL++ +++ L + L ++LD
Sbjct: 338 SNATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLD 397
Query: 311 SC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+C G GD L L+ + L+ L + SG+ L L L +N+ IS
Sbjct: 398 NCAGFGDMTL--LSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTG 455
Query: 370 LAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+ SL LN+++ IT + + AL ++ L L L G D+G L N L+ L+
Sbjct: 456 IGASKSLLQLNMES--ITGLSNVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLD 513
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G + ++ + ++ LNLS +T+ + IS L L LN+SN +AG
Sbjct: 514 LSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAGW 571
Query: 489 RHLKPLKNLRSLTLESCKVTANDI 512
++ L+ L L + +T DI
Sbjct: 572 EAIEKLQQLHVAILSNTHITDRDI 595
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 156/556 (28%), Positives = 230/556 (41%), Gaps = 124/556 (22%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSN 107
LS + D + H+ +C +L +L+ FC I+D LE L +G+
Sbjct: 799 LSNTRTNDENIRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 858
Query: 108 LTSLSFRRNNAIT--------AQGMKAFAGLINLVKLDLERCT-RI-------------- 144
L +L R ++ AQ +LVKL+LER RI
Sbjct: 859 LGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEEL 918
Query: 145 ---HGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
H V + L +L LN+K+ + I K +S +L+SL +S C VTD
Sbjct: 919 VLDHARKVCCIPSFSCLPRLRVLNLKYTD-INGDVTKNISESKSLRSLNLSHCKWVTD-- 975
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN---LEGCPVTAACLDSLSAL 253
I+ L L + + C IR SL KL LL L +TA + LS+
Sbjct: 976 ISVLSSLLTLEELNVNCCNGIR-----KGWESLGKLPLLRVAILSDTKITAKDIACLSSC 1030
Query: 254 GSLFYLNLNRCQ-LSD-------------------DGCEKFSKIGSLKVL------NLGF 287
L L RC+ LSD DG + + +G+L L N+
Sbjct: 1031 KKLVKLKFFRCKKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRG 1090
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLR 344
++I+ E + K L L +G+E L ++T L N+ LE L D + G+
Sbjct: 1091 SDISVESIGTSKSLVRLH------IEVGEE-LTDITPLSNITSLEELSLRDYRKPPEGVG 1143
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHL 403
L L L+S++L + ISD +L + S+ SLNLD+ ++TD ++ +++LT L L
Sbjct: 1144 TLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHISNLTALEEL 1201
Query: 404 DLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
+L G SG L LR +LE D G +I L LNL + C++TD
Sbjct: 1202 NLGGCYYITSGWKALSELPRLRVLNLEFTRVTTRDGGY-YISRCKYLVTLNL-ELCDMTD 1259
Query: 462 -------KTL---------ELISGLTGLVS------LNVSNSRITSAGLRHLKPLKNLRS 499
KTL EL G + L + LN+ S IT LR ++P +
Sbjct: 1260 ASCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDLREIQPPHTIEE 1319
Query: 500 LTLESCKVTANDIKRL 515
L L C V NDI L
Sbjct: 1320 LNLSYC-VELNDITPL 1334
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 102/235 (43%), Gaps = 39/235 (16%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTG---LCNLK 329
++ LK L L N I + HL + LE L I D L N+ G L NLK
Sbjct: 173 LKRLQMLKRLCLRSNNIDNNDARHLFNIGTLEEL-----AITDTMQLTNIRGISRLTNLK 227
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITD 388
CLEL+ T + S +R + L +++S I+D + ++ LS+L+ LNL IT
Sbjct: 228 CLELNSTNIDDSCVRRICACVKLSKLSVSECNNITDAT--PISQLSALEELNLSNCHITK 285
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
G+ L L L LDL G + D+ C L D G SL
Sbjct: 286 -GIGTLGMLLRLRILDLSGVPVEDN----------------CLKDLCDCG--------SL 320
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
LN+S LTD + +S T + LN++ R + G+ + L LR L ++
Sbjct: 321 ERLNISYRIQLTD--INPLSNATAIEELNLNGCRRITRGIGVVWALPKLRVLHMK 373
>gi|326679785|ref|XP_002660968.2| PREDICTED: hypothetical protein LOC100332407 [Danio rerio]
Length = 537
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 172/360 (47%), Gaps = 32/360 (8%)
Query: 189 CSKVTDSGIAYLKGLSI--SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE-GCPV--- 242
CS T + ++ + S+ SS + L + L H+ L + L L GCP+
Sbjct: 83 CSMATRATVSLMTAPSMQYSSSLACLTPELAELLLSHMARERLLRPRTLELFFGCPLQKF 142
Query: 243 --------TAACLDSLSALGSLFYLN-LNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD 292
T L L A L +L+ LN ++D G S + L+ LNL +++TD
Sbjct: 143 VLNCYPYTTNELLRQLRAFTCLKHLSFLNSPLITDAGLSVLSNLSKLQHLNLSSCSKLTD 202
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLV-----NLTGLCNLKCLELSDTQVGSSGLRHLS 347
CL H+ GL +L L LD + D GL+ + LC L L+ T + S LR L
Sbjct: 203 SCLQHITGLRSLTFLALDQTKVSDAGLLLYLQSGSSALCQL---SLNQTAITESTLRVLP 259
Query: 348 G-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+ L +++ T +SD S LA L +L++L+LD + + L L S L+ L L
Sbjct: 260 ASVPQLRMLSIKHTKVSDVS--ALAELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLA 317
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
G + D G L LR ++ G +TD+G+ + + L L+L+ LTD
Sbjct: 318 GIPVAD-GNHTLEIIAGLRLTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHG 376
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
+ +S +T L L++SN++++ +GL+ L LK L+ L L+ VT+ + L + LP+L
Sbjct: 377 ITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLDRTAVTSRGVAALITH-LPHL 435
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 192/409 (46%), Gaps = 33/409 (8%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS----QGSSLL 60
++++ + + + R L +LE F C LQ L YP ++ + + + + S L
Sbjct: 111 ELAELLLSHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFL 170
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L +TD+GL L + S LQ L+ + C +++D L+H+ GL +LT L+ + ++
Sbjct: 171 NSPL----ITDAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTK-VS 225
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLS 177
G+ + +G L +L L + L L + +L L+IK SD+ L+
Sbjct: 226 DAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKV---SDVSALA 282
Query: 178 GLTNLKSLQISCSKVTDSGI------AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
L NL++L + + V ++ + L LS++ + + + + + +
Sbjct: 283 ELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPVADGNHTLEII-------AGLR 335
Query: 232 LTLLNLEG-CPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
LT L L G VT + L LS L + QL+D G + S + LK L+L +
Sbjct: 336 LTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQ 395
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRH-LS 347
++D L L L L+ L LD + G+ L T L +L+ + L+ TQVG + +R L
Sbjct: 396 VSDSGLQGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLASTQVGDTVIRRGLV 455
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
L +NLS T I+D L+ L + L +NLD +T G+A L S
Sbjct: 456 HCPQLLKLNLSRTRITDQGLKFLCRM-QLSQVNLDGTGVTLVGIANLIS 503
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 168/351 (47%), Gaps = 25/351 (7%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLS 204
GL L L KL+ LN+ C+ +TDS ++ ++GL +L L + +KV+D+G + YL+ S
Sbjct: 178 AGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTKVSDAGLLLYLQSGS 237
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
+ L I L V S+ +L +L+++ V+ + +L+ L +L L+L+
Sbjct: 238 SALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKVSD--VSALAELKNLQTLHLDGT 295
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLD-SCGIGDEGLVN 321
+ ++ + + SL L+L + D L + GL L L L + D GL
Sbjct: 296 GVQENSLQCLASHPSLSALSLAGIPVADGNHTLEIIAGL-RLTQLTLPGRHSVTDSGLSF 354
Query: 322 LT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L+ L+ TQ+ G+ LS +T L+ ++LS T +SD L+ L L L+ L
Sbjct: 355 LSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQELC 414
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR----NFKNLRSLEICGGGLTD 436
LD +T G+AAL +T L HL + G T G +R + L L + +TD
Sbjct: 415 LDRTAVTSRGVAAL--ITHLPHLQVMGLASTQVGDTVIRRGLVHCPQLLKLNLSRTRITD 472
Query: 437 AGVKHIKDLSSLTLLNLSQ-NCNLTDKTL----ELISGLTGLVSLNVSNSR 482
G+K L + LSQ N + T TL LIS L S+ S++R
Sbjct: 473 QGLKF------LCRMQLSQVNLDGTGVTLVGIANLISACPHLSSVRASHTR 517
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 140/300 (46%), Gaps = 36/300 (12%)
Query: 225 FLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
L++L KL LNL C +T +CL ++ L SL +L L++ ++SD G + + GS +
Sbjct: 182 VLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTKVSDAGLLLYLQSGSSALC 241
Query: 284 NLGFNE--ITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L N+ IT+ L L + L L++ + D + L L NL+ L L T V
Sbjct: 242 QLSLNQTAITESTLRVLPASVPQLRMLSIKHTKVSD--VSALAELKNLQTLHLDGTGVQE 299
Query: 341 SGLRHLSGLTNLESINLSFTGISDG--SLRKLAGLSSLKSLNLDARQ-ITDTGLAALT-S 396
+ L+ L+ +L +++L+ ++DG +L +AGL L L L R +TD+GL+ L+
Sbjct: 300 NSLQCLASHPSLSALSLAGIPVADGNHTLEIIAGLR-LTQLTLPGRHSVTDSGLSFLSRQ 358
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L ++TD G L + L+ L + ++D+G++ + L L L L +
Sbjct: 359 TLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLDRT 418
Query: 457 CNLTDKTLELISGLT-------------------GLV------SLNVSNSRITSAGLRHL 491
+ LI+ L GLV LN+S +RIT GL+ L
Sbjct: 419 AVTSRGVAALITHLPHLQVMGLASTQVGDTVIRRGLVHCPQLLKLNLSRTRITDQGLKFL 478
>gi|290990770|ref|XP_002678009.1| predicted protein [Naegleria gruberi]
gi|284091619|gb|EFC45265.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 119/238 (50%), Gaps = 10/238 (4%)
Query: 222 LHVFLTSLQKLTLLNLEGC------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
+ +F+ S K +++N++ C P + + L SL+ ++ Q+ +G + S
Sbjct: 93 IELFMKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLY---ISDNQIGVEGAKYIS 149
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
++ L L++ +N+I E ++ + L SLN+ GIG EG ++ + L L +
Sbjct: 150 EMKQLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGY 209
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
Q+G G +++S + L S+++ + GI + ++ + L SLN+ QI G ++
Sbjct: 210 NQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKFIS 269
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
+ LT L++ G +I GA ++ K L SL+I + G K I ++ LT L++
Sbjct: 270 EMKQLT-LNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEGSKFISEMKQLTSLDI 326
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 2/202 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SL + IG EG ++ + L L+++ Q+G G +++S + L S+N+ +
Sbjct: 127 MKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYISEMKQLTSLNIYYN 186
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
GI + ++ + L SLN+ QI G ++ + LT LD++ I G+ Y+
Sbjct: 187 GIGVEGTKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISE 246
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L SL I + G K I ++ LT LN++ N + + + IS + L SL+++
Sbjct: 247 MKQLTSLNIGYNQIGVEGSKFISEMKQLT-LNITGN-QIGVEGAKFISEMKQLTSLDITY 304
Query: 481 SRITSAGLRHLKPLKNLRSLTL 502
++I G + + +K L SL +
Sbjct: 305 NQIGVEGSKFISEMKQLTSLDI 326
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
S ++ ++ + L SL + QI G ++ + LT LD+ +I G+ Y+ K
Sbjct: 117 SPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYISEMK 176
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
L SL I G+ G K+I ++ LT LN+ N + + + IS + L SL++ +
Sbjct: 177 QLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYN-QIGVEGAKYISEMKQLTSLDIYYNG 235
Query: 483 ITSAGLRHLKPLKNLRSLTL 502
I G +++ +K L SL +
Sbjct: 236 IGVEGSKYISEMKQLTSLNI 255
>gi|290972583|ref|XP_002669031.1| predicted protein [Naegleria gruberi]
gi|284082572|gb|EFC36287.1| predicted protein [Naegleria gruberi]
Length = 369
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 169/383 (44%), Gaps = 34/383 (8%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E + + LT L N I M+ + L +LD+ERC G+ L + +L
Sbjct: 18 IEAISEMRQLTKLGI---NGIQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMPQLT 74
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
SLN + N + D K +S ++ L L I+ +++ G Y+
Sbjct: 75 SLNGGY-NYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYI------------------ 115
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
++L +LT L++ + + + L +L LN+ R + D+G S++
Sbjct: 116 --------STLNQLTELDIGNNNILSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMK 167
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-- 336
L L++GFN E + + L +L L++ I G+ +T NL L L +
Sbjct: 168 QLTALDIGFNMFGFEGIKAISQLNHLIELSIQGNEITINGVKLITEKKNLTSLNLGNIFY 227
Query: 337 QVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+ L L S + L ++++ I LA + +LK LN+ I GL+ +T
Sbjct: 228 DTKTPELSQLVSQMHQLTTLDIENNNIGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHIT 287
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
LT LT L++ G +I D GA + + K L L I L + G + I ++ LT L +S
Sbjct: 288 QLTQLTSLNVCGNQIDDEGAKIVSSMKQLLKLNIEENFLNEGGCETIIEMPQLTQLYISS 347
Query: 456 NCNLTDKTLELISGLTGLVSLNV 478
N + +K +E+I G L + +
Sbjct: 348 N-RIGEKQVEMICGKKNLRDIRI 369
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 133/283 (46%), Gaps = 12/283 (4%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ +++LT L + G + + + + L L++ RC +S +G + + L LN
Sbjct: 21 ISEMRQLTKLGING--IQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMPQLTSLNG 78
Query: 286 GFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
G+N + D L+ ++ L L++++ IG EG ++ L L L++ + + S G
Sbjct: 79 GYNYLQCGDAKLI--SEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNILSEGA 136
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ + L NL +N+ I D ++ + L +L++ G+ A++ L L L
Sbjct: 137 KFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLNHLIEL 196
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS----LTLLNLSQNCNL 459
+ G IT +G + KNL SL + G D + L S LT L++ +N N+
Sbjct: 197 SIQGNEITINGVKLITEKKNLTSLNL-GNIFYDTKTPELSQLVSQMHQLTTLDI-ENNNI 254
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ L++ + L LN++ + I GL H+ L L SL +
Sbjct: 255 GPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNV 297
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 113/257 (43%), Gaps = 36/257 (14%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L+ +++ +++ D G ++ + L +LD F + G++ + L++L LS + N
Sbjct: 144 NLVKLNVERNNIGDEGANYISEMKQLTALDIGFNM-FGFEGIKAISQLNHLIELSI-QGN 201
Query: 118 AITAQGMKAFAGLINLVKLDL-----ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
IT G+K NL L+L + T LV+ + +L +L+I+ N I
Sbjct: 202 EITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVS--QMHQLTTLDIE-NNNIGPEV 258
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
L+ + NLK L I+ + + G+++ +T L +L
Sbjct: 259 ANLLAEMKNLKHLNIAFNNIEKEGLSH--------------------------ITQLTQL 292
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T LN+ G + +S++ L LN+ L++ GCE ++ L L + N I +
Sbjct: 293 TSLNVCGNQIDDEGAKIVSSMKQLLKLNIEENFLNEGGCETIIEMPQLTQLYISSNRIGE 352
Query: 293 ECLVHLKGLTNLESLNL 309
+ + + G NL + +
Sbjct: 353 KQVEMICGKKNLRDIRI 369
>gi|406830031|ref|ZP_11089625.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 306
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 111/228 (48%), Gaps = 8/228 (3%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LT+ LT L L P+ A + + AL L L L+ Q++D G + S + L+ LNL
Sbjct: 69 LTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAGLQSISSLEHLRELNL 128
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+TD L L GLT L SLNL+ I GLV L+ L L+ L L +T V +
Sbjct: 129 AGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEALYLQNTVVDFESIPP 188
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL--THL 403
LSGL +L+ ++L+ T G +R + GL SL+ L L+ I D + AL ++ H
Sbjct: 189 LSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDEDIPALAAVLAQNCPHF 248
Query: 404 D-LFGARITDSGAAY-----LRNFKNLRSLEICGGGLTDAGVKHIKDL 445
LF + S AA L + K + + G +T GV ++ L
Sbjct: 249 KGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRLRKL 296
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 126/274 (45%), Gaps = 18/274 (6%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
+L DG S V++L + +TD+ L L +L L IGD + +
Sbjct: 36 RLEADGKASGSLGADGHVVSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGA 95
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L L+ L L TQV +GL+ +S L +L +NL+ ++DG L LAGL+ L SLNL+
Sbjct: 96 LTQLESLALDHTQVTDAGLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDT 155
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
QI GL L+ L L L L + L ++L+ L + G V+ I
Sbjct: 156 QINGLGLVYLSKLNRLEALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITG 215
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN--------VSNSRITSAGLRHLKPLKN 496
L SL L L N T E I L +++ N V + ++ A L + PL +
Sbjct: 216 LPSLERLYL----NGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLAD 271
Query: 497 LRSLTL---ESCKVTANDIKRLQSRDLP--NLVS 525
L+ TL KVT + + RL+ + LP N+VS
Sbjct: 272 LKEFTLIHVHGTKVTKDGVVRLR-KLLPEANVVS 304
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 101/212 (47%), Gaps = 8/212 (3%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L+A +L L L + D + L+ L L ++TD L + L +L LNL
Sbjct: 69 LTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAGLQSISSLEHLRELNL 128
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
C + D GL +L GL L L L+DTQ+ GL +LS L LE++ L T + S+
Sbjct: 129 AGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEALYLQNTVVDFESIPP 188
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-----GAAYLRNFKNL 424
L+GL SLK L+L + + A+T L L L L G I D A +N +
Sbjct: 189 LSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDEDIPALAAVLAQNCPHF 248
Query: 425 RSLEICGGGLTDAGVKHIK---DLSSLTLLNL 453
+ L + L+DA ++ + DL TL+++
Sbjct: 249 KGLFVEKTALSDAALEPMHPLADLKEFTLIHV 280
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 118/267 (44%), Gaps = 53/267 (19%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L AF AL L L P + D M VI + + L S+ L + VTD+GL + +L+
Sbjct: 69 LTAFP--ALTTLALTDSP-IGDAHMGVIGAL-TQLESLALDHTQVTDAGLQSISSLEHLR 124
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
L+ C ++DGGL L GL+ LTSL+ T+I
Sbjct: 125 ELNLAGC-SVTDGGLGSLAGLTELTSLNLND--------------------------TQI 157
Query: 145 HG-GLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIA---- 198
+G GLV L L +LE+L ++ N + D + + PLSGL +LK L ++ +K T GI
Sbjct: 158 NGLGLVYLSKLNRLEALYLQ--NTVVDFESIPPLSGLESLKILHLAGTK-TGGGIVRAIT 214
Query: 199 --------YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL 250
YL G SI + ++ C H ++K L + P + L
Sbjct: 215 GLPSLERLYLNGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEP-----MHPL 269
Query: 251 SALGSLFYLNLNRCQLSDDGCEKFSKI 277
+ L ++++ +++ DG + K+
Sbjct: 270 ADLKEFTLIHVHGTKVTKDGVVRLRKL 296
>gi|410907724|ref|XP_003967341.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 403
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 25/286 (8%)
Query: 253 LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLN 308
+ SL LNL+ C Q++D K ++ + +L+VL LG + IT+ L+ + GL L+SLN
Sbjct: 119 IPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLN 178
Query: 309 LDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINL 357
L SC + D G+ +L+G+ +L+ L L D Q + L+H+S GL L+ +NL
Sbjct: 179 LRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNL 238
Query: 358 SFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITD 412
SF G ISD + L+ ++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D
Sbjct: 239 SFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGD 297
Query: 413 SGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-G 469
AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+
Sbjct: 298 QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADH 357
Query: 470 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
LT L +++ ++IT GL + L L+ L L ++T N+ R
Sbjct: 358 LTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTENERMR 403
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 158/306 (51%), Gaps = 30/306 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TDS + + + +L+ L +S C ++TDS + YLK L
Sbjct: 89 IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNL 148
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALG-------- 254
+ + CS I L V L +L LNL C V+ + LS +
Sbjct: 149 EVLELGG--CSNITNTGLLLVAW-GLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCL 205
Query: 255 SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 311
SL L L CQ L+D + SK + LKVLNL F I+D ++HL +T+L SLNL S
Sbjct: 206 SLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRS 265
Query: 312 C-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL 367
C I D G+++L G L L++S ++G L +++ GL L+S++L ISD +
Sbjct: 266 CDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGI 325
Query: 368 -RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN 423
R + + LK+LN+ +ITD GL + LT LT +DL+G +IT G +
Sbjct: 326 NRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPC 385
Query: 424 LRSLEI 429
L+ L +
Sbjct: 386 LKVLNL 391
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 160/322 (49%), Gaps = 32/322 (9%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A L NL L+L
Sbjct: 94 HIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
C+ I G L+ GL +L+SLN++ C ++D + LSG+T +S C
Sbjct: 154 GGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMT--RSAAEGC------- 204
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGS 255
LS+ + C + L HV L KL +LNL C ++ + LS +
Sbjct: 205 ------LSLEKLTLQDCQKLTDLSLKHVS-KGLNKLKVLNLSFCGGISDVGMIHLSHMTH 257
Query: 256 LFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLD 310
L LNL C +SD G + +GSL++ L++ F ++I D+ L ++ +GL L+SL+L
Sbjct: 258 LCSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLC 316
Query: 311 SCGIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINL-SFTGISDGS 366
SC I D+G+ + + LK L + ++ GL ++ LT L I+L T I+
Sbjct: 317 SCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRG 376
Query: 367 LRKLAGLSSLKSLNLDARQITD 388
L ++ L LK LNL Q+T+
Sbjct: 377 LERITQLPCLKVLNLGLWQMTE 398
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 145/295 (49%), Gaps = 27/295 (9%)
Query: 68 DVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGM 124
++TDSGL H ++D +L+ L+ + C QI+D L + L NL L + IT G+
Sbjct: 105 NLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLELGGCSNITNTGL 164
Query: 125 KAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCNCITDSDMK 174
A GL L L+L C + G+ +L G+ + LE L ++ C +TD +K
Sbjct: 165 LLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLK 224
Query: 175 PLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQK 231
+S GL LK L +S C ++D G+ +L ++ + S+ C I +H+ + SL +
Sbjct: 225 HVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSL-R 283
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKF-SKIGSLKVLNLG 286
L+ L++ C SL+ + Y L+L C +SDDG + ++ LK LN+G
Sbjct: 284 LSGLDVSFCDKIGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIG 341
Query: 287 -FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV 338
ITD+ L + LT L ++L C I GL +T L LK L L Q+
Sbjct: 342 QCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQM 396
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 338 LNIGQCGRITDKG-------------------------LELIADHLTQLTGIDLYGCT-- 370
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++T+
Sbjct: 371 ---------------------KITKRGLERITQLPCLKVLNLGLWQMTE 398
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ ++ESLNL C G+G + ++ L L C +++D+ +G
Sbjct: 89 IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIA----EY 144
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L+ +T
Sbjct: 145 LKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGC 204
Query: 399 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L L L ++TD ++ N + +L CGG ++D G+ H+ ++ L LNL
Sbjct: 205 LSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGG-ISDVGMIHLSHMTHLCSLNL 263
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 511 DIKRL 515
I R+
Sbjct: 324 GINRM 328
>gi|290981600|ref|XP_002673518.1| predicted protein [Naegleria gruberi]
gi|284087102|gb|EFC40774.1| predicted protein [Naegleria gruberi]
Length = 399
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 124/252 (49%), Gaps = 26/252 (10%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
LS D E+ S+I +L LNL ++ +C+ ++ L L +L L++ I + GL N++ +
Sbjct: 132 LSMDDIEQLSEISNLNHLNLNGVDLGGKCMEYISKLP-LITLELEASNIDEIGLGNISQI 190
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L+L GS LRHL L+NL+ ++L++ I D + L+ L SL+ L+L
Sbjct: 191 TTLSKLKLFGNNFGSESLRHLVKLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNN 250
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
I + G+ ++ L L+ L+L RI + G ++ KNL L + G I+++
Sbjct: 251 IGNDGVQFISKLENLSQLELIRNRIDERGVQFISKMKNLTKLNL--------GENPIRNI 302
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+L L + Q L L++ ++I + HL +KNL+ L +E
Sbjct: 303 GALYLSKMKQ-----------------LKGLDLDGTKIDDFSIEHLCLMKNLQYLNIERT 345
Query: 506 KVTANDIKRLQS 517
++ ++ L+
Sbjct: 346 NLSETKVETLKE 357
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 2/228 (0%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
++ LS + +L +LNLN L E SK+ L L L + I + L ++ +T L
Sbjct: 137 IEQLSEISNLNHLNLNGVDLGGKCMEYISKL-PLITLELEASNIDEIGLGNISQITTLSK 195
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L L G E L +L L NLK L L+ ++ G+ +LS L +LE ++LS+ I +
Sbjct: 196 LKLFGNNFGSESLRHLVKLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDG 255
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
++ ++ L +L L L +I + G+ ++ + LT L+L I + GA YL K L+
Sbjct: 256 VQFISKLENLSQLELIRNRIDERGVQFISKMKNLTKLNLGENPIRNIGALYLSKMKQLKG 315
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
L++ G + D ++H+ + +L LN+ + NL++ +E + LV
Sbjct: 316 LDLDGTKIDDFSIEHLCLMKNLQYLNI-ERTNLSETKVETLKESLKLV 362
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 29/222 (13%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L + L NL+ L +D IGDE + L+ LK L +G L++ S L +LE
Sbjct: 42 LENFPYLENLKELIIDGSYIGDENAIYLSKFKCLKRLNACSCNLGPKSLQYFSNLNSLEE 101
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ L + +S G L L L LK L+L ++ + L+ ++ L HL+L G
Sbjct: 102 LTLPYNKVS-GGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISNLNHLNLNGV------ 154
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKTLELISGLTGL 473
D G K ++ +S L L+ L + N+ + L IS +T L
Sbjct: 155 ---------------------DLGGKCMEYISKLPLITLELEASNIDEIGLGNISQITTL 193
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L + + S LRHL L NL+ L+L K+ ++ L
Sbjct: 194 SKLKLFGNNFGSESLRHLVKLSNLKYLSLAYNKIDDEGVEYL 235
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ ++L + L G++ L HL SNL+ L + +I D G+E+L L +L LS
Sbjct: 188 SQITTLSKLKLFGNNFGSESLRHLVKLSNLKYLSLAYN-KIDDEGVEYLSLLQSLEYLSL 246
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G++ + L NL +L+L R G+ + + L LN+ N I +
Sbjct: 247 SYNN-IGNDGVQFISKLENLSQLELIRNRIDERGVQFISKMKNLTKLNLGE-NPIRNIGA 304
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL 200
LS + LK L + +K+ D I +L
Sbjct: 305 LYLSKMKQLKGLDLDGTKIDDFSIEHL 331
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 124/322 (38%), Gaps = 74/322 (22%)
Query: 73 GLIHLKDCSNLQSLD-FNFCIQISDGGLEHL---------------------RGLSNLTS 110
G L+ SNL SL+ GGL HL LS +++
Sbjct: 86 GPKSLQYFSNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISN 145
Query: 111 LSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
L+ N + G + + L+ L+LE GL N+ + L L + + N
Sbjct: 146 LNHLNLNGVDLGGKCMEYISKLPLITLELEASNIDEIGLGNISQITTLSKLKL-FGNNFG 204
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
++ L L+NLK L ++ +K+ D G+ Y
Sbjct: 205 SESLRHLVKLSNLKYLSLAYNKIDDEGVEY------------------------------ 234
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
LS L SL YL+L+ + +DG + SK+ +L L L N
Sbjct: 235 --------------------LSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQLELIRNR 274
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
I + + + + NL LNL I + G + L+ + LK L+L T++ + HL +
Sbjct: 275 IDERGVQFISKMKNLTKLNLGENPIRNIGALYLSKMKQLKGLDLDGTKIDDFSIEHLCLM 334
Query: 350 TNLESINLSFTGISDGSLRKLA 371
NL+ +N+ T +S+ + L
Sbjct: 335 KNLQYLNIERTNLSETKVETLK 356
>gi|326201424|ref|ZP_08191295.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
gi|325988024|gb|EGD48849.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
Length = 1098
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 134/523 (25%), Positives = 243/523 (46%), Gaps = 75/523 (14%)
Query: 10 IFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
I +L + + F D L+ + G +N D++ + SS+ S+ ++
Sbjct: 18 ILTQLFVHNAFADSDIVTFADPNLEAVVRG---AINKPTGDILKTDVSSITSIIAENKNI 74
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ L ++ +NL L + +ISD + L GL++L L+ ++N + A AG
Sbjct: 75 NN--LTGIECLTNLTMLSLSKN-KISD--VTPLAGLTSLKYLALYQSNI---SNINALAG 126
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LINL LDL + + LK + KL L + W N +D+ LS LTNL+ LQ+ C
Sbjct: 127 LINLEYLDLGMNSV--SDISALKNMTKLTYLELSWNNI---TDISALSKLTNLQYLQLGC 181
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF---------LTSLQKLTLLNLEGC 240
+++ D IS + S + +L LH+F L+ L+ LT L+L
Sbjct: 182 NRIVD----------ISPI-----SNLTKLKTLHLFYNRISDISGLSGLKTLTYLHLNSN 226
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
V + ++ L+ L L YL+L +++D +K+ + L+L +N+IT+ + L
Sbjct: 227 NV--SNINPLNGLTMLSYLDLGFNKITD--ISALNKLTKITDLDLSYNKITNINV--LSN 280
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLC--------NLKCLELSDTQVGSSGLRHLSG---- 348
LT+L L L++ I + + TG+ NL+ + D + + L
Sbjct: 281 LTSLNDLKLENNPINNYSPI--TGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSED 338
Query: 349 -LTNLESINLSFTGISDGSLRKLAGLS---SLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+ +E+ ++ + ++ L+G+ +LK L L ++ + + +++LT L L+
Sbjct: 339 MIYKIEAPQITVLDAGNMEIKSLSGIEQLCNLKDLYLAGNELDN--INPISALTSLEALN 396
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L +I+D LRN NL+ L + ++D + + DLSSL L+LS N K L
Sbjct: 397 LEKNQISDLNV--LRNLHNLKYLILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNTKNL 452
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
S L L L++ ++ I + L+ + L+ LTL+ ++
Sbjct: 453 ---SKLVNLYELHLDDNEIND--INGLQNITKLKILTLDKNQI 490
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 176/412 (42%), Gaps = 61/412 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NL+ LD +SD + L+ ++ LT L NN + A + L NL L L C
Sbjct: 129 NLEYLDLGMN-SVSD--ISALKNMTKLTYLELSWNNI---TDISALSKLTNLQYLQL-GC 181
Query: 142 TRI------------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
RI + + ++ GL L++L N S++ PL+GLT L
Sbjct: 182 NRIVDISPISNLTKLKTLHLFYNRISDISGLSGLKTLTYLHLNSNNVSNINPLNGLTMLS 241
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE---GC 240
L + +K+TD I+ L L+ + + + + I + L LTSL L L N
Sbjct: 242 YLDLGFNKITD--ISALNKLTKITDLDLSYNKITNINVLS-NLTSLNDLKLENNPINNYS 298
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHL 298
P+T +L ++ L+ C + K + + +IT D + +
Sbjct: 299 PITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDMIYKIEAPQITVLDAGNMEI 358
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
K L+ +E LCNLK L L+ ++ + +S LT+LE++NL
Sbjct: 359 KSLSGIEQ------------------LCNLKDLYLAGNEL--DNINPISALTSLEALNLE 398
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
ISD L L L +LK L L +I+D + L+ L+ L LDL +T++ L
Sbjct: 399 KNQISD--LNVLRNLHNLKYLILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNTKN--L 452
Query: 419 RNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTL-LNLSQNCNLTDKTLELIS 468
NL L + + D G+++I L LTL N Q+ L L+LIS
Sbjct: 453 SKLVNLYELHLDDNEINDINGLQNITKLKILTLDKNQIQDVCLLKNKLDLIS 504
>gi|290982059|ref|XP_002673748.1| predicted protein [Naegleria gruberi]
gi|284087334|gb|EFC41004.1| predicted protein [Naegleria gruberi]
Length = 370
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 160/352 (45%), Gaps = 5/352 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L N+ +L+ R N I ++ + L KL+LE G+ L L +L LN+
Sbjct: 6 LENIANLAVRMNGEIGFN-LQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVS- 63
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
C C ++ L L L L I+ + + G Y+ + + + I + I
Sbjct: 64 C-CYIGLNLSHLILLKALTHLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGA--K 120
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ L++LT LN+ + +S + L YLN+ + D G S++ L L+
Sbjct: 121 YISGLEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLS 180
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G+N+I +E ++ L N+ L++ I ++G + + L L + +G G +
Sbjct: 181 VGYNDIGEEGAKYISELMNVSILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQ 240
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++S L L +++S I D + + + L L++ +I G ++ L L +L
Sbjct: 241 YISSLNQLTHLSISTNNIGDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLY 300
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ G I D+GA ++ L L+I +T G+K+I ++ LT L + N
Sbjct: 301 ISGNEIGDNGAQFISEMNQLTILDISSINITPIGIKYISNMEYLTDLRIIDN 352
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 151/343 (44%), Gaps = 5/343 (1%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L+ L + L L+ NN I G+K L L L++ C I L +L L L
Sbjct: 24 LQVLDSMKELKKLNLEYNN-IDPNGIKYLGSLKQLTDLNV-SCCYIGLNLSHLILLKALT 81
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
LNI N I K + + L L I + + G Y+ GL + + I + I +
Sbjct: 82 HLNI-TSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKK 140
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
H+ + +++LT LN+ G + +S + L L++ + ++G + S++
Sbjct: 141 DGAKHI--SEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELM 198
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
++ +L++G N I ++ + + L L + C IG EG ++ L L L +S +
Sbjct: 199 NVSILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNI 258
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G G +++ + L +++ I + + L +L +L + +I D G ++ +
Sbjct: 259 GDEGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMN 318
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
LT LD+ IT G Y+ N + L L I + G K+
Sbjct: 319 QLTILDISSINITPIGIKYISNMEYLTDLRIIDNNIDSMGAKY 361
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 2/154 (1%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L N+ ++ + G +L+ L + LK LNL+ I G+ L SL LT L++
Sbjct: 6 LENIANLAVRMNGEIGFNLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCC 65
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
I + ++L K L L I + G K+I ++ LT L++ N ++ + + IS
Sbjct: 66 YIGLN-LSHLILLKALTHLNITSNNIRAEGAKYIGEMKQLTKLSIGSN-DIGPEGAKYIS 123
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
GL L LN+ ++ I G +H+ +K L L +
Sbjct: 124 GLEQLTYLNIRSNDIKKDGAKHISEMKQLTYLNV 157
>gi|449269519|gb|EMC80282.1| F-box/LRR-repeat protein 14, partial [Columba livia]
Length = 344
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 151/270 (55%), Gaps = 24/270 (8%)
Query: 265 QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 320
Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC + D G+
Sbjct: 62 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 121
Query: 321 NLTGLCN--------LKCLELSDTQVGSS-GLRHLS-GLTNLESINLSFTG-ISDGSLRK 369
+L G+ L+ L L D Q S L+HL+ GL L +NLSF G ISD L
Sbjct: 122 HLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLH 181
Query: 370 LAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNL 424
L+ +SSL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L
Sbjct: 182 LSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGL 240
Query: 425 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-S 481
RSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +
Sbjct: 241 RSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT 300
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTAND 511
RIT GL + L L+ L L ++T ++
Sbjct: 301 RITKRGLERITQLPCLKVLNLGLWEMTESE 330
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 126/246 (51%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ ++ESLNL C G+G + ++ L +L C +++D+ +G ++L G
Sbjct: 19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKG 77
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 78 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 133
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLN 452
GL L L +++D +L R LR L + CGG ++DAG+ H+ +SSL LN
Sbjct: 134 CLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLN 192
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L LRSL+L SC ++
Sbjct: 193 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISD 252
Query: 510 NDIKRL 515
I R+
Sbjct: 253 EGINRM 258
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 165/340 (48%), Gaps = 56/340 (16%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 138
Query: 184 SLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-P 241
L + C K++D + +L L +L LNL C
Sbjct: 139 QLTLQDCQKLSDLSLKHLA-------------------------RGLGRLRQLNLSFCGG 173
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVH 297
++ A L LS + SL LNL C +SD G + +GSL++ L++ F +++ D+ L +
Sbjct: 174 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAY 232
Query: 298 L-KGLTNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGL 349
+ +GL L SL+L SC I DEG+ + GL L +C+ ++D + HLS L
Sbjct: 233 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQL 291
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T ++ T I+ L ++ L LK LNL ++T++
Sbjct: 292 TGIDLYG--CTRITKRGLERITQLPCLKVLNLGLWEMTES 329
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 70/302 (23%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDG----------GLEHLR---- 103
S++LSG ++TD+GL H + + S+L+SL+ + C QI+D GLE L
Sbjct: 27 SLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 86
Query: 104 -------------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCT 142
GL L SL+ R ++ G+ AG+ + L +L L+ C
Sbjct: 87 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 146
Query: 143 RIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAY 199
++ L +L +GL +L LN+ +C I+D+ + LS +++L+SL + SC ++D+GI +
Sbjct: 147 KLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMH 206
Query: 200 LK-------GLSIS--------SVIFI-----------LCSMIIRLFCLHVFLTSLQKLT 233
L GL +S S+ +I LCS I ++ + + L
Sbjct: 207 LAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLR 266
Query: 234 LLNLEGC-PVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEI 290
LN+ C +T L+ ++ L L ++L C +++ G E+ +++ LKVLNLG E+
Sbjct: 267 TLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWEM 326
Query: 291 TD 292
T+
Sbjct: 327 TE 328
>gi|290991518|ref|XP_002678382.1| predicted protein [Naegleria gruberi]
gi|284091994|gb|EFC45638.1| predicted protein [Naegleria gruberi]
Length = 344
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 150/356 (42%), Gaps = 59/356 (16%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN IT++G + F L L+KLD+ GG I D MK
Sbjct: 11 NNPITSKGAEYFTNLKQLIKLDI-------GGTE------------------IGDEGMKS 45
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL----HVFLTSLQK 231
+ + L L++ +K+ D GI L L+ S L + +R + L L +
Sbjct: 46 IGKMKQLTKLEMCGNKIGDEGIKALSNLNSS-----LTHLCVRKNNIGQEGAKTLKHLTR 100
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L++ + +S L L L + + + D+G + +I +L L + N I
Sbjct: 101 LNYLDIRKNKLGNQGAKEISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIG 160
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE------------------- 332
D + + L +L++L + + EG+ + + L CL
Sbjct: 161 DGGAISVSQLRHLKTLCIQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQ 220
Query: 333 -----LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
+SD Q+G SG + +S L L ++ + + I + L+G+ +L LNL +I
Sbjct: 221 LTRLLISDNQIGDSGAKIISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKIG 280
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+ GL A++ + L L + I D GA YL N NLR L I G ++D +K ++
Sbjct: 281 NKGLEAISGMLQLQKLSVIHCEIGDEGAKYLLNMPNLRKLYI-GDDISDRIIKELR 335
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 8/283 (2%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+ + T LN+ P+T+ + + L L L++ ++ D+G + K+ L L + N
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 289 EITDECLVHLKGLTNLES----LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+I DE +K L+NL S L + IG EG L L L L++ ++G+ G +
Sbjct: 61 KIGDEG---IKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAK 117
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S L L + + I D + + + +L L + I D G +++ L L L
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ + G + N K L L I L +K I L+ LT L +S N + D
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDN-QIGDSGA 236
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
++IS L L +L + +S I G + L +KNL L L K+
Sbjct: 237 KIISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKI 279
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 149/321 (46%), Gaps = 19/321 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGL-SNLTSLSFR 114
L+ +D+ G+++ D G+ + L L+ C +I D G++ L L S+LT L R
Sbjct: 26 KQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEM--CGNKIGDEGIKALSNLNSSLTHLCVR 83
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDM 173
+NN I +G K L L LD+ + + G + L +L L I C N I D
Sbjct: 84 KNN-IGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEISELPQLTRLFI--CKNNIGDEGA 140
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI----IRLFCLHVFLTSL 229
K + + L L +S + + D G + L + I + + I+ C ++
Sbjct: 141 KAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLCIQWTNVRTEGIKAIC------NM 194
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
++LT L+++ + + + L L L ++ Q+ D G + S++ L L + +
Sbjct: 195 KQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAKIISELNQLTNLRIYDSN 254
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
I E L G+ NL LNL IG++GL ++G+ L+ L + ++G G ++L +
Sbjct: 255 IGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKLSVIHCEIGDEGAKYLLNM 314
Query: 350 TNLESINLSFTGISDGSLRKL 370
NL + + ISD +++L
Sbjct: 315 PNLRKLYIG-DDISDRIIKEL 334
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 2/216 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+T LN+ + I +G T L L L++ T++G G++ + + L + +
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 361 GISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
I D ++ L+ L SSL L + I G L LT L +LD+ ++ + GA +
Sbjct: 61 KIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEIS 120
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
L L IC + D G K I ++ +LT L +S+N + D +S L L +L +
Sbjct: 121 ELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENP-IGDGGAISVSQLRHLKTLCIQ 179
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ + + G++ + +K L L ++S K+ +DIK +
Sbjct: 180 WTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPI 215
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 151/340 (44%), Gaps = 59/340 (17%)
Query: 11 FNEL-VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD 68
F EL V++ +T E F + L L +G + D+ M I L +++ G+
Sbjct: 4 FTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTE-IGDEGMKSIGKM-KQLTKLEMCGNK 61
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITAQGMKA 126
+ D G+ K SNL S + C++ ++ G E + L +LT L++ R N + QG K
Sbjct: 62 IGDEGI---KALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKE 118
Query: 127 FAGLINLVKL----------------DLERCTRI--------HGGLVNLKGLMKLESLNI 162
+ L L +L +++ T++ GG +++ L L++L I
Sbjct: 119 ISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLCI 178
Query: 163 KWCNCITDS-----------------------DMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+W N T+ D+KP+ L L L IS +++ DSG
Sbjct: 179 QWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAKI 238
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
+ L+ + + I S I L+ ++ LT LNL G + L+++S + L L
Sbjct: 239 ISELNQLTNLRIYDSNI--GIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKL 296
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
++ C++ D+G + + +L+ L +G ++I+D + L+
Sbjct: 297 SVIHCEIGDEGAKYLLNMPNLRKLYIG-DDISDRIIKELR 335
>gi|406831652|ref|ZP_11091246.1| hypothetical protein SpalD1_08439 [Schlesneria paludicola DSM
18645]
Length = 267
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%)
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
P+ A L + L L L L Q++D EK + +L L LG+++++D + HLKG
Sbjct: 92 PLPAELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKG 151
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
L+ LE + L +GD+ L GL NLK + L+DT V +G++ L L +L+ + L+ T
Sbjct: 152 LSGLEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGT 211
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+SD L+ L + +LK L++ I+D G AA+
Sbjct: 212 DVSDDGLKYLIEMKALKRLDIGNTLISDEGQAAI 245
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 271 CEKFSKIGSLKVLNLGF---NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
E S+IG+LK L + ++TD + L G+ NL L L + D G+ +L GL
Sbjct: 95 AELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSG 154
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L+ + L TQVG L GL NL+SI L+ T ++D ++KL L L+ L L ++
Sbjct: 155 LEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVS 214
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
D GL L + L LD+ I+D G A +R
Sbjct: 215 DDGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 78/151 (51%)
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E L + L L++L L + D + L G+ NL L L +Q+ G+ HL GL+ L
Sbjct: 96 ELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
E I L T + D + L GL +LKS+ L+ +TD G+ L +L L +L L G ++D
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
G YL K L+ L+I ++D G I+
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAIR 246
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 355 INLSFTG--ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+ FTG S+R G++S+ SL R + L+ + +L L L L G ++TD
Sbjct: 61 VEFRFTGPMWVPKSIRSHGGVTSI-SLTTTDRPLPAELLSEIGTLKELKTLWLLGPQVTD 119
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
L KNL L + L+D G++H+K LS L + L Q + DKT +++ GL
Sbjct: 120 VAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQ-TQVGDKTCDILQGLPN 178
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L S+ ++++ +T AG++ LK L +L+ L L V+ + +K L
Sbjct: 179 LKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 112 SFRRNNAITAQGMKAFAGLINLV---KLDLERCTRIHGGLVN--------------LKGL 154
SF+ I A+ +++ G + + + + R HGG+ + L +
Sbjct: 43 SFQDERRIAAK-IESLGGRVEFRFTGPMWVPKSIRSHGGVTSISLTTTDRPLPAELLSEI 101
Query: 155 MKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
L+ L W +TD ++ L G+ NL L + S+++D GI +LKGLS IF++
Sbjct: 102 GTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLI 161
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+ + C L L L + L VT A + L ALG L YL L +SDDG +
Sbjct: 162 QTQVGDKTC--DILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLK 219
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHL-KGLTN 303
++ +LK L++G I+DE + KG+T+
Sbjct: 220 YLIEMKALKRLDIGNTLISDEGQAAIRKGMTS 251
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+L++L L L G VT ++ L + +L L L QLSD G E + L+ + L
Sbjct: 103 TLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQ 162
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
++ D+ L+GL NL+S+ L+ + D G+ L L +L+ L L+ T V GL++L
Sbjct: 163 TQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYLI 222
Query: 348 GLTNLESINLSFTGISD 364
+ L+ +++ T ISD
Sbjct: 223 EMKALKRLDIGNTLISD 239
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 65/129 (50%)
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L LK L L QV + L G+ NL + L ++ +SD + L GLS L+ + L
Sbjct: 104 LKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQT 163
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
Q+ D L L L + L +TD+G L+ +L+ L + G ++D G+K++ +
Sbjct: 164 QVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYLIE 223
Query: 445 LSSLTLLNL 453
+ +L L++
Sbjct: 224 MKALKRLDI 232
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G VTD + L NL L + Q+SD G+EHL+GLS L + F + +
Sbjct: 114 GPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWI-FLIQTQVGDKTCD 171
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
GL NL + L G+ LK L L+ L + + ++D +K L + LK L
Sbjct: 172 ILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTD-VSDDGLKYLIEMKALKRL 230
Query: 186 QISCSKVTDSGIAYLK 201
I + ++D G A ++
Sbjct: 231 DIGNTLISDEGQAAIR 246
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L ++ LT L L ++ ++ L L L ++ L + Q+ D C+ + +LK + L
Sbjct: 125 LVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQTQVGDKTCDILQGLPNLKSIAL 184
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
+TD + LK L +L+ L L + D+GL L + LK L++ +T + G
Sbjct: 185 NDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYLIEMKALKRLDIGNTLISDEG 241
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
K L++L + G +TD V+ + + +LT L L + L+D+ +E + GL+GL + +
Sbjct: 103 TLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWIFLI 161
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+++ L+ L NL+S+ L VT +K+L++
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKA 199
>gi|18568223|gb|AAL75966.1|AF467462_1 PpaB [Danio rerio]
Length = 392
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 169/331 (51%), Gaps = 44/331 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + +LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 66 RGIRRVQTLSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ L I+ + L S+ +
Sbjct: 120 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGL-----LLIAWGLHRLKSLNL 174
Query: 218 RLFCLHVF---LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 273
R C HV + L +T EGC SL YL L CQ L+D +
Sbjct: 175 R-SCRHVSDVGIGHLAGMTRSAAEGCL-------------SLEYLTLQDCQKLTDLSLKH 220
Query: 274 FSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLK 329
SK + LKVLNL F I+D ++HL +T+L SLNL SC I D G+++L G L
Sbjct: 221 ISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLS 280
Query: 330 CLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQ 385
L++S ++G L ++ GL L+S++L ISD + R + + L++LN+ +
Sbjct: 281 GLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVR 340
Query: 386 ITDTGLAALT-SLTGLTHLDLFG-ARITDSG 414
ITD GL + LT LT +DL+G +IT G
Sbjct: 341 ITDKGLELIADHLTQLTGIDLYGCTKITKRG 371
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 157/282 (55%), Gaps = 23/282 (8%)
Query: 250 LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLE 305
+ + SL LNL+ C Q++D + ++ + +L+VL LG + IT+ L+ + GL L+
Sbjct: 111 VQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLK 170
Query: 306 SLNLDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLES 354
SLNL SC + D G+ +L G+ +L+ L L D Q + L+H+S GLT L+
Sbjct: 171 SLNLRSCRHVSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 230
Query: 355 INLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDL-FGARI 410
+NLSF G ISD + L+ ++SL SLNL + I+DTG+ L T L+ LD+ F +I
Sbjct: 231 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 290
Query: 411 TDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
D A + + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+
Sbjct: 291 GDQSLACIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIA 350
Query: 469 -GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 508
LT L +++ ++IT GL + L L+ L ++T
Sbjct: 351 DHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNLGLWQMT 392
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 63/311 (20%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 128 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 187
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 188 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 230
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-------GLSISSVIFI 211
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L GL +S
Sbjct: 231 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVS----- 285
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
FC + SL AC+ L L L+L C +SDDG
Sbjct: 286 --------FCDKIGDQSL---------------ACIA--QGLYQLKSLSLCSCHISDDGI 320
Query: 272 EKF-SKIGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN 327
+ ++ L+ LN+G ITD+ L + LT L ++L C I GL +T L
Sbjct: 321 NRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPC 380
Query: 328 LKCLELSDTQV 338
LK L Q+
Sbjct: 381 LKVFNLGLWQM 391
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G R
Sbjct: 84 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQY 139
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L + I++ L +A GL LKSLNL + R ++D G+ L +T
Sbjct: 140 LKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 199
Query: 399 -GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L +L L ++TD ++ + L+ +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 200 LSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGG-ISDAGMIHLSHMTSLWSLNL 258
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L+VS +I L + + L L+SL+L SC ++ +
Sbjct: 259 RSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDD 318
Query: 511 DIKRL 515
I R+
Sbjct: 319 GINRM 323
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAF 127
++D+G+IHL ++L SL+ C ISD G+ HL G L+ L + I Q +
Sbjct: 239 ISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACI 298
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKS 184
A GL L L L C G+ + + + +L +LNI C ITD ++ ++ LT L
Sbjct: 299 AQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTG 358
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ + C+K+T G+ I +L CL VF L ++T
Sbjct: 359 IDLYGCTKITKRGL----------------ERITQLPCLKVFNLGLWQMT 392
>gi|72385461|ref|XP_846398.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|25956236|emb|CAB95328.2| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 134/511 (26%), Positives = 218/511 (42%), Gaps = 59/511 (11%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 610 ALNELNLSNCFGINAGWEALEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 667
Query: 92 IQISDGGLEHLRGLSNLTSL-------------------SFRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 668 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 722
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 723 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVL 780
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFIL--CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
+ ++V D+ + + S V L C I + + SL L LN++ C
Sbjct: 781 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISA----IASLTALEELNIDNCCNV 836
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 302
+ + L L L+ + +D+ S+ SL LNL F +ITD + L +T
Sbjct: 837 TSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDITD--VTALSKIT 894
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
LE LNLD C +G+ L L + L + + +G + S L N +S+
Sbjct: 895 MLEELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLER 954
Query: 363 SDG--SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
S G S++ L+ +++L+ L LD AR++ + S + L L + + TD +
Sbjct: 955 SRGRISVKALSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTK 1009
Query: 420 NF---KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
N K+LRSL + +TD V +N CN K E + L L
Sbjct: 1010 NISESKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNC---CNGIRKGWESLGKLPLLRV 1066
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
+S+++IT+ + L K L L C+
Sbjct: 1067 AILSDTKITAKDIACLSSCKKLVKLKFFQCE 1097
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 180/430 (41%), Gaps = 80/430 (18%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N TD++ +L+
Sbjct: 531 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTN--TDNE--------SLR 580
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
SL +S + V+ + K ++S + +SL+ L LNL C
Sbjct: 581 SLCLSQTVVSLNLSHCWKMTNVSHI------------------SSLEALNELNLSNCFGI 622
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLT 302
A ++L L L L+ ++D FS +L L+L F N++ D + L +T
Sbjct: 623 NAGWEALEKLQQLHVAILSNTHITDRDISHFSNCKNLITLDLSFCNKLLD--VTALSNIT 680
Query: 303 NLESLNLDSCGIGDEGLV---NLTGLC--NLKCLELSDTQV-----GSSGLR-------- 344
LE LNLDSC +GL L LC N+K ++L D+ + G+S +R
Sbjct: 681 TLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENCKG 740
Query: 345 -----HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD----------- 388
LS L LE +NL + + L L L+ L+L Q+ D
Sbjct: 741 FGDVAPLSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDDNSLENICTCSS 800
Query: 389 -------------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
T ++A+ SLT L L++ SG LR +
Sbjct: 801 PLVSLNLSNCKKITSISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTN 860
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
D V+H+ + SL LNL+ ++TD T +S +T L LN+ G+ L L
Sbjct: 861 DENVRHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCHNIRKGIETLGTLP 918
Query: 496 NLRSLTLESC 505
R L+++ C
Sbjct: 919 KARILSMKEC 928
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 155/556 (27%), Positives = 230/556 (41%), Gaps = 124/556 (22%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSN 107
LS + D + H+ +C +L +L+ FC I+D LE L +G+
Sbjct: 854 LSNTRTNDENVRHVSECKSLNTLNLAFCKDITDVTALSKITMLEELNLDCCHNIRKGIET 913
Query: 108 LTSLSFRRNNAIT--------AQGMKAFAGLINLVKLDLERCT-RI-------------- 144
L +L R ++ AQ +LVKL+LER RI
Sbjct: 914 LGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRGRISVKALSNVATLEEL 973
Query: 145 ---HGGLV----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
H V + L +L LN+K+ + I K +S +L+SL +S C VTD
Sbjct: 974 VLDHARKVCCIPSFSCLPRLRVLNLKYTD-INGDVTKNISESKSLRSLNLSHCKWVTD-- 1030
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN---LEGCPVTAACLDSLSAL 253
I+ L L + + C IR SL KL LL L +TA + LS+
Sbjct: 1031 ISVLSSLLTLEELNVNCCNGIR-----KGWESLGKLPLLRVAILSDTKITAKDIACLSSC 1085
Query: 254 GSLFYLNLNRCQ-LSD-------------------DGCEKFSKIGSLKVL------NLGF 287
L L +C+ LSD DG + + +G+L L N+
Sbjct: 1086 KKLVKLKFFQCEKLSDVTVVYKIQSLEELIVTSCSDGLKGLNALGTLPRLRFHHLRNVRG 1145
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLR 344
++I+ E + K L L +G+E L ++T L N+ LE L D + G+
Sbjct: 1146 SDISVESIGTSKSLVRLH------IEVGEE-LTDITPLSNITSLEELSLRDYRKPPEGVG 1198
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHL 403
L L L+S++L + ISD +L + S+ SLNLD+ ++TD ++ +++LT L L
Sbjct: 1199 TLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--ISHISNLTALEEL 1256
Query: 404 DLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
+L G SG L LR +LE D G +I L LNL + C++TD
Sbjct: 1257 NLGGCYYITSGWEALSELPRLRVLNLEFTRATTRDGGY-YISRCKYLVTLNL-ELCDMTD 1314
Query: 462 -------KTL---------ELISGLTGLVS------LNVSNSRITSAGLRHLKPLKNLRS 499
KTL EL G + L + LN+ S IT LR ++P +
Sbjct: 1315 ASCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDLREIQPPHTIEE 1374
Query: 500 LTLESCKVTANDIKRL 515
L L C V NDI L
Sbjct: 1375 LNLSYC-VELNDITPL 1389
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 191/445 (42%), Gaps = 56/445 (12%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIHG--GLVNLKGLMKL 157
L+ L L L R NN G F L L D + T I G L NLK L +L
Sbjct: 228 LKRLQMLKRLCLRSNNIDNNDGRHLFNIGTLEELAITDTMQLTNIRGISRLTNLKCL-EL 286
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLSISSVIFIL 212
S NI DS ++ +S L L IS C+ +TD S +A L+ L++S+
Sbjct: 287 NSTNID------DSCVEEISACAKLSKLCISKCNNITDATPISQLAALEELNLSN----- 335
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSD--- 268
C + + L + L G PV CL L GSL LN++ R QL+D
Sbjct: 336 CHITKGIGTLGMLLRLRMLDL----SGVPVEDNCLKDLCDCGSLERLNISYRIQLTDINP 391
Query: 269 ------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+GC + ++ + L+VL++ +++ L + L ++L
Sbjct: 392 LSNATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSL 451
Query: 310 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
D+C G GD L L+ + L+ L + SG+ L L L +N+ IS
Sbjct: 452 DNCAGFGDMTL--LSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFT 509
Query: 369 KLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+ SL LN+++ IT + + AL ++ L L L G D+G L N L+ L
Sbjct: 510 GIGASKSLLQLNMES--ITGLSNVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKML 567
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
++ G + ++ + ++ LNLS +T+ + IS L L LN+SN +AG
Sbjct: 568 DLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINAG 625
Query: 488 LRHLKPLKNLRSLTLESCKVTANDI 512
L+ L+ L L + +T DI
Sbjct: 626 WEALEKLQQLHVAILSNTHITDRDI 650
>gi|422811192|ref|ZP_16859602.1| internalin P4 [Listeria monocytogenes FSL J1-208]
gi|378750825|gb|EHY61417.1| internalin P4 [Listeria monocytogenes FSL J1-208]
Length = 776
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 149/299 (49%), Gaps = 27/299 (9%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L LT L LE + + L LS L L ++ Q+SD S++ +L L L N
Sbjct: 99 LNNLTELRLENVDNSVSDLRPLSGLIKLEVISFYHSQISD--LSPLSELINLTSLTLNDN 156
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+I+D + L TNL +LN+ S I D L L+ L NL L+ + Q+ S L LSG
Sbjct: 157 QISD--ISPLANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFRENQI--SDLSPLSG 210
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L NL S+ ++ ISD + LA L++L +LN+ QITD + HL +
Sbjct: 211 LINLTSLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGLISLVDLHLSV--N 266
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+ITD A L + NLRSL+I I DLSSL+ L + +L D + I+
Sbjct: 267 QITDISA--LSDLTNLRSLDIDHN--------QIIDLSSLSNLTNLKRLHLVDNQISSIT 316
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSF 526
L+GL++L RI ++ + PL +L + LE V +N I + S ++L NLV F
Sbjct: 317 PLSGLINLTDLEIRINQ--VKDVSPLSSLAN--LEMLYVDSNQISDISSLKNLKNLVLF 371
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 164/344 (47%), Gaps = 50/344 (14%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + N+++ S +N + +G++ L NL +L LE L L GL+KLE
Sbjct: 72 DELNSVENISADSGLYDNVASIEGVQY---LNNLTELRLENVDNSVSDLRPLSGLIKLEV 128
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
++ SD+ PLS L NL SL ++ ++++D + L+ S+ + L ++
Sbjct: 129 ISFYHSQI---SDLSPLSELINLTSLTLNDNQISD-----ISPLANSTNLTTLNMSSNKI 180
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
L L++L L L+ + + L LS L +L L +N ++SD + + +
Sbjct: 181 SDLSP-LSNLSNLNKLDFRENQI--SDLSPLSGLINLTSLTINANKISD--ISPLANLTN 235
Query: 280 LKVLNLGFNEITDEC--------------------LVHLKGLTNLESLNLDSCGIGDEGL 319
L LN+G N+ITD + L LTNL SL++D I D L
Sbjct: 236 LTTLNMGINQITDLSSLSGLISLVDLHLSVNQITDISALSDLTNLRSLDIDHNQIID--L 293
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+L+ L NLK L L D Q+ S + LSGL NL + + + D + L+ L++L+ L
Sbjct: 294 SSLSNLTNLKRLHLVDNQI--SSITPLSGLINLTDLEIRINQVKD--VSPLSSLANLEML 349
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGAR---ITDSGAAYLRN 420
+D+ QI+D ++SL L +L LF A I + Y +N
Sbjct: 350 YVDSNQISD-----ISSLKNLKNLVLFSAHSQTIVNKPVNYQKN 388
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 30/194 (15%)
Query: 301 LTNLESLNLDSCGIGD-----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L ++E+++ DS G+ D EG+ L L L+ LE D V S LR LSGL LE I
Sbjct: 74 LNSVENISADS-GLYDNVASIEGVQYLNNLTELR-LENVDNSV--SDLRPLSGLIKLEVI 129
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
+ + ISD L L+ L +L SL L+ QI+D ++ L + T LT L++ +I+D
Sbjct: 130 SFYHSQISD--LSPLSELINLTSLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD--L 183
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQ---NCN-LTDKTLELISGL 470
+ L N NL L D I DLS L+ L+NL+ N N ++D + ++ L
Sbjct: 184 SPLSNLSNLNKL--------DFRENQISDLSPLSGLINLTSLTINANKISD--ISPLANL 233
Query: 471 TGLVSLNVSNSRIT 484
T L +LN+ ++IT
Sbjct: 234 TNLTTLNMGINQIT 247
>gi|242083750|ref|XP_002442300.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
gi|241942993|gb|EES16138.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
Length = 489
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 130/461 (28%), Positives = 207/461 (44%), Gaps = 93/461 (20%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C +ISD G++ L + L SL+ I+ +K+
Sbjct: 10 CPRLEKLSLKWCREISDIGIDLLAKKCPELRSLN------------------ISYLKVG- 50
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG 196
+G L ++ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G
Sbjct: 51 ------NGSLRSISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSEG 104
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHV----FLTSL----QKLTLLNLEGCPVTAACLD 248
+A L I F+ + CLH FL+ L + LT+L L+G V+ + L
Sbjct: 105 LASL----IDGRNFV--QKLYAADCLHEIGQRFLSKLATLKETLTMLKLDGLEVSDSLLQ 158
Query: 249 SL-SALGSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---------GFNEITDECLV 296
++ + L + L++C ++DDG ++ L+ ++L + I D C +
Sbjct: 159 AIGESCNKLVEIGLSKCSGVTDDGISSLVAQCSDLRTIDLTCCNLITNNALDSIADNCKM 218
Query: 297 HLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
LE L L+SC I ++GL + C NL+ I
Sbjct: 219 -------LECLRLESCSLINEKGLKRIATCC-----------------------PNLKEI 248
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITD 412
+L+ G+ D +L LA S L+ L L I+D G+A ++S G L LDL+ ITD
Sbjct: 249 DLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGIAFISSNCGKLVELDLYRCNSITD 308
Query: 413 SGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-G 469
G A L N K ++ L +C +TD G+ H+ L LT L L +T + ++ G
Sbjct: 309 DGLAALVNGCKRIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIG 368
Query: 470 LTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 508
L+ L++ + AGL L NLR LT+ C+VT
Sbjct: 369 CKSLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 409
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K + IA+ +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 230 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGIAFIS 289
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A LVN G +++ LN+
Sbjct: 290 SNCGKLVELDLYRCNSITDDGLAA---------------------LVN--GCKRIKLLNL 326
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
+CN ITD+ + L L L +L++ C + + G+ ISSV I C +I L
Sbjct: 327 CYCNKITDTGLGHLGSLEELTNLELRC-------LVRITGIGISSV-AIGCKSLIEL 375
>gi|434399050|ref|YP_007133054.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
gi|428270147|gb|AFZ36088.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
Length = 842
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 198/464 (42%), Gaps = 79/464 (17%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D L+ ++ L+NLTSL+ N + + F N + L L+
Sbjct: 108 EIDDDNLDRIKSLTNLTSLNLSTPNVLIYG--RTFHYTHNHI-----------TDLKPLR 154
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL----SISSV 208
L KLE L + N I D+ PL LTNL+ L + S + D + LK L S+S
Sbjct: 155 SLAKLEKLELS-ANPI--KDISPLQSLTNLRELNLKHSPIED--LTPLKSLINLTSLSVR 209
Query: 209 IF-----ILCSMIIRLFCLHV---------FLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
++ I + L L V FL SL KLT L+L V LSAL
Sbjct: 210 VYDAKNLIPLKYLTNLTQLSVRASQLNNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQ 269
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---------------GFNEITDECLVH-- 297
SL NL L+ G S + SL L F ++T CL+
Sbjct: 270 SL--TNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENE 327
Query: 298 ------LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
L LT L +L L+ I D L+ L L NL L L+ Q+ S L L LTN
Sbjct: 328 INDFSSLGALTKLTNLILNKNQISD--LIPLQSLTNLTSLALNKNQI--SDLTPLQSLTN 383
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L S+ L+ ISD L L L++L SL L+ QI+D L L SLT LT L L +I+
Sbjct: 384 LTSLALNKNQISD--LTPLQSLTNLTSLTLNKNQISD--LTPLQSLTNLTSLCLVKNQIS 439
Query: 412 D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISG 469
D + L N NL +TD L SLT L NL+ N N LIS
Sbjct: 440 DLTPLQSLTNLTNLTYTNSHSTQITD-----FTPLQSLTKLTNLTLNKNEISDFTPLIS- 493
Query: 470 LTGLVSLNVSNSRITS-AGLRHLKPLK-NLRSLTLESCKVTAND 511
LT L L + S ++ + L L NLRSL L + ++ D
Sbjct: 494 LTNLTFLYLRRSWWSTIERINQLNSLPNNLRSLALSTQRICRTD 537
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 135/297 (45%), Gaps = 50/297 (16%)
Query: 264 CQLSDDGCEKFSKIGSLKVLNLG--------------FNEITDECLVHLKGLTNLESLNL 309
C++ DD ++ + +L LNL N ITD L L+ L LE L L
Sbjct: 107 CEIDDDNLDRIKSLTNLTSLNLSTPNVLIYGRTFHYTHNHITD--LKPLRSLAKLEKLEL 164
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ I D + L L NL+ L L + + L L L NL S LS +L
Sbjct: 165 SANPIKD--ISPLQSLTNLRELNLKHSPI--EDLTPLKSLINLTS--LSVRVYDAKNLIP 218
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRS 426
L L++L L++ A Q+ + ++ L SLT LTHL L ++ + A + L++ NL
Sbjct: 219 LKYLTNLTQLSVRASQLNN--ISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSLTNLTH 276
Query: 427 LEICGGGLTDAGV-KHIKDLSSLTLLNLSQN--------------CNLTDKTLELIS--G 469
L + G G D V + + +L+ LTL S N C + ++ + S
Sbjct: 277 LTLNGYGTIDLSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEINDFSSLGA 336
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
LT L +L ++ ++I + L L+ L NL SL L +++ D+ LQS L NL S
Sbjct: 337 LTKLTNLILNKNQI--SDLIPLQSLTNLTSLALNKNQIS--DLTPLQS--LTNLTSL 387
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 139/330 (42%), Gaps = 93/330 (28%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L L+ +NL L N I L+ L L+ LT F NN I+ G AF L
Sbjct: 263 SDLSALQSLTNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINN-ISLLG--AFPKLT 319
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L ++ E +L L KL +L + N SD+ PL LTNL SL ++ ++
Sbjct: 320 SLCLIENEI-----NDFSSLGALTKLTNLIL---NKNQISDLIPLQSLTNLTSLALNKNQ 371
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
++D LT LQ LT +L+
Sbjct: 372 ISD-------------------------------LTPLQSLT---------------NLT 385
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
+L LN+ Q+SD + +L L L N+I+D LT L+S
Sbjct: 386 SLA------LNKNQISD--LTPLQSLTNLTSLTLNKNQISD--------LTPLQS----- 424
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
L NLT LC +K ++SD + L+ L+ LTNL N T I+D + L
Sbjct: 425 -------LTNLTSLCLVKN-QISDL----TPLQSLTNLTNLTYTNSHSTQITDFT--PLQ 470
Query: 372 GLSSLKSLNLDARQITD-TGLAALTSLTGL 400
L+ L +L L+ +I+D T L +LT+LT L
Sbjct: 471 SLTKLTNLTLNKNEISDFTPLISLTNLTFL 500
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 28/188 (14%)
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
D ++ L + LTNL S+NLS + L ++ + ITD L L
Sbjct: 106 DCEIDDDNLDRIKSLTNLTSLNLSTPNV----------LIYGRTFHYTHNHITD--LKPL 153
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNL 453
SL L L+L I D L++ NLR L + + D +K + +L+SL++
Sbjct: 154 RSLAKLEKLELSANPIKDISP--LQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSV--- 208
Query: 454 SQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-- 510
+ D K L + LT L L+V S++ + L+ L L L+L S KV N
Sbjct: 209 ----RVYDAKNLIPLKYLTNLTQLSVRASQLNNISF--LQSLTKLTHLSLRSIKVQVNRA 262
Query: 511 -DIKRLQS 517
D+ LQS
Sbjct: 263 SDLSALQS 270
>gi|168700135|ref|ZP_02732412.1| hypothetical protein GobsU_11445 [Gemmata obscuriglobus UQM 2246]
Length = 120
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L LKGLT L +L + D G+ L+GL L LEL+ TQV +G++ LSGLT L +
Sbjct: 4 LAALKGLTQL---DLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
++L FT ++D ++ L+GL L LNL +TD G+ AL L GLT LDL R+TD+G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L +L GLT LDLF ++TD G L K L LE+ +TDAGVK + L++LT L+L
Sbjct: 4 LAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLDL 63
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+TD ++ +SGL L+ LN+ + +T AG++ L LK L L L +VT
Sbjct: 64 G-FTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVT 117
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 69/118 (58%)
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L L L L+L DT+V G++ LSGL L + L+FT ++D ++ L+GL++L +L+
Sbjct: 3 ELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLD 62
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L ++TD G+ AL+ L L L+L +TD+G L K L L++ +TDAG
Sbjct: 63 LGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%)
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ L+ L L ++L T ++D +++L+GL L L L Q+TD G+ AL+ LT LT
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
LDL ++TD+G L K+L L + +TDAGVK + L LT+L+LS
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLS 112
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+++LA L L L+L ++TD G+ L+ L GLT L+L ++TD+G L L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L++ +TDAGVK + L L LNL +TD ++ ++GL GL L++S +R+T A
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTV-VTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 487 G 487
G
Sbjct: 120 G 120
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
+ L+AL L L+L +++D G ++ S + L L L F ++TD + L GLT L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L+L + D G+ L+GL +L L L T V +G++ L+GL L ++LSFT ++D
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTD 118
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 63/117 (53%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L+ LT L+L VT + LS L L L L Q++D G + S + +L L+L
Sbjct: 4 LAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLDL 63
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
GF ++TD + L GL +L LNL + D G+ L GL L L+LS T+V +G
Sbjct: 64 GFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%)
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
++ + + L L+L ++TD + L GL L L L + D G+ L+GL L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+L T+V +G++ LSGL +L +NL T ++D ++ LAGL L L+L ++TD G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L L LD F +++D G++ L GL LT L +T G+KA +GL L
Sbjct: 3 ELAALKGLTQLDL-FDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALTT 60
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL G+ L GL L LN+ +TD+ +K L+GL L L +S ++VTD+
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNL-GVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 196 G 196
G
Sbjct: 120 G 120
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 27/147 (18%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
MK A L L +LDL G+ L GL L L + + +TD+ +K LSGLT L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALT 59
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
+L + +KVTD+G+ L G L+ L LNL VT
Sbjct: 60 TLDLGFTKVTDAGVKALSG--------------------------LKHLIQLNLGVTVVT 93
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDG 270
A + +L+ L L L+L+ +++D G
Sbjct: 94 DAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L+ + VTD+G+ L + L +LD F +++D G++ L GL +L L+
Sbjct: 34 LTRLELTFTQVTDAGVKALSGLTALTTLDLGFT-KVTDAGVKALSGLKHLIQLNLGV-TV 91
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI 144
+T G+KA AGL L LDL TR+
Sbjct: 92 VTDAGVKALAGLKGLTILDLS-FTRV 116
>gi|168052598|ref|XP_001778727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669846|gb|EDQ56425.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 643
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 112/433 (25%), Positives = 188/433 (43%), Gaps = 64/433 (14%)
Query: 132 NLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
NL +++L + G + L G L +L C +T++ ++ L+GLT ++ L ++ C
Sbjct: 71 NLQEVNLSGEATVDGEWMAYLGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLARC 130
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS 249
K++D + ++ LS + + + + L L +L LL+L GCPVT A L S
Sbjct: 131 RKISDDAVPHI--LSFKMLRKLGLAETGLTTKGLLLLPGLSRLVLLDLGGCPVTDADLIS 188
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT------------------ 291
ALG L +L+L ++++ G S +LK LNL +T
Sbjct: 189 FQALGMLEHLDLWGSKVTNMGARCLSSFKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDV 248
Query: 292 ----------DECLVHL---------------KGLTNLESLNLDSCGIGDEGLVNLTGLC 326
D L L NL L+L S + D L +
Sbjct: 249 ESIYGDGTFSDSLLRELFLSGASLSLKDVISGSNTRNLHLLDLASSRVND--LDAFVHIP 306
Query: 327 NLKCLELSDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDAR 384
L L+L T + + + GL NL I+LS+T I + +AG + ++ L+L+
Sbjct: 307 KLAILDLRATGLTNELMLKFQGLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHT 366
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITD------------SGAAYLRNFKNLRSLEICGG 432
+ D L L L+L G+++ S +YL ++LR L++
Sbjct: 367 PVDDNVFIYLVHFPVLQSLNLGGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYT 426
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
G+ DA + +K+L L+ L++ N +L+D+ L+ +S LV L + + IT+ GL K
Sbjct: 427 GVGDAALHGLKNLVQLSHLHIHSN-SLSDECLQQLSSFPNLVCLGIGGATITADGLLSYK 485
Query: 493 PLKNLRSLTLESC 505
P L L L C
Sbjct: 486 PPSLLEELDLTDC 498
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 123/480 (25%), Positives = 214/480 (44%), Gaps = 30/480 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS--QGSS 58
MLP +++ ++FN L+ S L+ + F+ LQ++ L V+ +WM + +
Sbjct: 41 MLPSELAHELFNSLLQSHLLSATLIGLFQS-NLQEVNLSGEATVDGEWMAYLGGCRHLRA 99
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L + D +T++ + L + ++ LD C +ISD + H+ L L
Sbjct: 100 LRATDCKA--LTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKMLRKLGLAETGL 157
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + L LV LDL C L++ + L LE L++ W + +T+ + LS
Sbjct: 158 TTKGLLLLPG-LSRLVLLDLGGCPVTDADLISFQALGMLEHLDL-WGSKVTNMGARCLSS 215
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
LK L ++ + VT + L+ + + + ++ F SL L L L
Sbjct: 216 FKTLKYLNLAMTAVT-----AIPQLNSLLSLNLCNCDVESIYGDGTFSDSL--LRELFLS 268
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
G ++ + S S +L L+L +++D + F I L +L+L +T+E ++
Sbjct: 269 GASLSLKDVISGSNTRNLHLLDLASSRVND--LDAFVHIPKLAILDLRATGLTNELMLKF 326
Query: 299 KGL-TNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
+GL NL ++L I EG+ + G N++ L L+ T V + +L L+S+N
Sbjct: 327 QGLGDNLRWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSLN 386
Query: 357 LS------FTGISDGSLRKLAGLSSLKSLN----LDARQ--ITDTGLAALTSLTGLTHLD 404
L F + ++++ LS L+ L LD R + D L L +L L+HL
Sbjct: 387 LGGSKVNGFMTVGSEEFQQISVLSYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQLSHLH 446
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ ++D L +F NL L I G +T G+ K S L L+L+ LT+ L
Sbjct: 447 IHSNSLSDECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLTDCWLLTEPAL 506
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 350 TNLESINLSFTGISDGS-LRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG 407
+NL+ +NLS DG + L G L++L D + +T+ + LT LT + LDL
Sbjct: 70 SNLQEVNLSGEATVDGEWMAYLGGCRHLRALRATDCKALTNNAIRQLTGLTAMEELDLAR 129
Query: 408 AR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
R I+D ++ +FK LR L + GLT G+ + LS L LL+L C +TD L
Sbjct: 130 CRKISDDAVPHILSFKMLRKLGLAETGLTTKGLLLLPGLSRLVLLDLG-GCPVTDADLIS 188
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L L L++ S++T+ G R L K L+ L L VTA
Sbjct: 189 FQALGMLEHLDLWGSKVTNMGARCLSSFKTLKYLNLAMTAVTA 231
>gi|71668063|ref|XP_820975.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886340|gb|EAN99124.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 930
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 122/484 (25%), Positives = 205/484 (42%), Gaps = 61/484 (12%)
Query: 58 SLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS + VT+ G+ + + L L C +I L+ LR L+ L L
Sbjct: 368 ALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIE--SLQWLRALNQLRVLDLG-Y 424
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-------------------------GLVNL 151
+++T + A L KLDL+ C RI GLV L
Sbjct: 425 SSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPL 484
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
K LE ++++ C ++D ++ L LT L+ + + ++VT+ G+ L V+ +
Sbjct: 485 KDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRM 542
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
RL + FL +LQ+L ++L CPVT + +L SL L L C +D
Sbjct: 543 --RQCYRLTDAN-FLGALQQLEEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND-V 598
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKC 330
+ L +L+L + +E V L L +L + S + N L LK
Sbjct: 599 NFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKR 658
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINL-----------------SFTGISDGSLRKLAGL 373
L+LS T+V S L L LE+++L S TG+ R +
Sbjct: 659 LDLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLDFLILQPSSGTGVCAIVPRDVEPH 718
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
++ + + D G + + ++T + I + A + + LR L + G G
Sbjct: 719 DTVGDIIAGKEKNPDDGPSPIETMTTNDGV------IKSTAVAAVVSRHRLRELTLSGTG 772
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+TD G++ ++ L L L+ N TD + ++ L+ L L++S + +T +GL L P
Sbjct: 773 VTDEGLRALQYCPGLERLRLAHCKNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSP 830
Query: 494 LKNL 497
NL
Sbjct: 831 SGNL 834
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Query: 325 LCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLD 382
LC L+ L+LS TQV G+ R +S L L LS G SL+ L L+ L+ L+L
Sbjct: 366 LCALRDLDLSYTQVTEEGMYRDVSKLNKLS--RLSLEGCRKIESLQWLRALNQLRVLDLG 423
Query: 383 ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+TD L AL L LDL + RIT +LR L + +TD G+
Sbjct: 424 YSSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVP 483
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+KD ++L ++L ++D + ++ LT L ++V +R+T+ G+ L + LR +
Sbjct: 484 LKDFAALEWISLEGCGAVSD--VNVLCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMR 541
Query: 502 LESC 505
+ C
Sbjct: 542 MRQC 545
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG------CEKFSKIG- 278
++ L KL+ L+LEGC + L L AL L L+L ++DD C + +K+
Sbjct: 388 VSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGYSSVTDDSLTALRFCPELAKLDL 446
Query: 279 ------------------SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
SL+ LNL +TDE LV LK LE ++L+ CG +
Sbjct: 447 QWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPLKDFAALEWISLEGCG----AVS 502
Query: 321 NLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSL 376
++ LCNL L D T+V + G+ LS L + + ++D + L L L
Sbjct: 503 DVNVLCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQL 560
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ ++L +T+ G+AAL L L L + +L ++L L++ + +
Sbjct: 561 EEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND-VNFLGGLEHLMLLDLHHTTVDE 619
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
G + L L + + + L L L++S +++TS L L+
Sbjct: 620 EGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPV 679
Query: 497 LRSLTLESCK 506
L +L+L CK
Sbjct: 680 LETLSLRGCK 689
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 114/452 (25%), Positives = 175/452 (38%), Gaps = 97/452 (21%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
R ++Q +L YS +T+ SL A R C L L L Q+ G M ++ + SL +
Sbjct: 412 RALNQLRVLDLGYS-SVTDDSLTALRFCPELAKLDL-QWCGRITSLMCLVGALCDSLREL 469
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG----LEHLRGL-------SNLTSL 111
+L+ + VTD GL+ LKD + L+ + C +SD L LR + +N +
Sbjct: 470 NLTETSVTDEGLVPLKDFAALEWISLEGCGAVSDVNVLCNLTRLREVDVGRTRVTNRGVV 529
Query: 112 SFRRNNAITAQGMKA---------FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
S + A+ M+ L L ++DL C + G+ L G L L +
Sbjct: 530 SLSQCQALRVMRMRQCYRLTDANFLGALQQLEEVDLSDCPVTNEGIAALFGARSLRKLRL 589
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
+ C+ + D + L GL +L L + + V + G SV C ++ L
Sbjct: 590 QSCHAVNDVNF--LGGLEHLMLLDLHHTTVDEEG----------SVGLAQCPQLMTLIMH 637
Query: 223 HVFLTSLQ---------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-------- 265
V + SLQ +L L+L VT+ L L L L+L C+
Sbjct: 638 SVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLDFL 697
Query: 266 -------------LSDD------------GCEKFSKIGSLKVLNLGFNE--ITDECLVHL 298
+ D G EK G + + N+ I + +
Sbjct: 698 ILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKEKNPDDGPSPIETMTTNDGVIKSTAVAAV 757
Query: 299 KGLTNLESLNLDSCGIGDEGLVNL---TGLCNLK---CLELSDTQVGSSGLRHLSGLTNL 352
L L L G+ DEGL L GL L+ C +D V L L+ L
Sbjct: 758 VSRHRLRELTLSGTGVTDEGLRALQYCPGLERLRLAHCKNFTDVAV-------LRWLSQL 810
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ ++LS TG++ L KL+ S NL AR
Sbjct: 811 KELDLSATGVTGSGLAKLS-----PSGNLPAR 837
>gi|290980538|ref|XP_002672989.1| predicted protein [Naegleria gruberi]
gi|284086569|gb|EFC40245.1| predicted protein [Naegleria gruberi]
Length = 315
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 14/225 (6%)
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS------LSALGSLFYLNLNRCQLSDDG 270
+ LF F+ S+ ++ LDS +S + L LN+ ++ D G
Sbjct: 94 VELFMKSQFMNSIV--------NVKFSSWLLDSFERAEFISEMKQLTSLNIYNNRIGDVG 145
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ +++ L LN+G N I + + + L SL+ + IGDEG ++ + L
Sbjct: 146 AKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHTYNNRIGDEGAKYISEMKQLTS 205
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L++ Q+G G + +SG+ L S+++ I D + ++G+ L SLN+ +I D G
Sbjct: 206 LDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKLISGMKQLTSLNIGVNEIGDEG 265
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
++ + LT L ++ RI D GA Y+ K L SL I G L
Sbjct: 266 AKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLNIGGNELV 310
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 1/181 (0%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++ + L L + + ++G G ++++ + L S+N+ I + ++ + L SL+
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+I D G ++ + LT LD+ G +I D GA + K L SL I + D G K
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
I + LT LN+ N + D+ +LISG+ L SL + N+RI G +++ +K L SL
Sbjct: 245 ISGMKQLTSLNIGVN-EIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLN 303
Query: 502 L 502
+
Sbjct: 304 I 304
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 94/190 (49%)
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
S + E S++ L LN+ N I D ++ + L SLN+ IG +G ++ +
Sbjct: 118 SFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMK 177
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L L + ++G G +++S + L S+++ I D + ++G+ L SL++ +I
Sbjct: 178 QLTSLHTYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRI 237
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
D G ++ + LT L++ I D GA + K L SL+I + D G K+I ++
Sbjct: 238 GDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMK 297
Query: 447 SLTLLNLSQN 456
LT LN+ N
Sbjct: 298 QLTSLNIGGN 307
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S + L S+N+ I D + + + L SLN+ +I G ++ + LT L
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+ RI D GA Y+ K L SL+I G + D G K I + LT L++ N + D+ +
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNN-RIGDEGAK 243
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
LISG+ L SLN+ + I G + + +K L SL + + ++
Sbjct: 244 LISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRI 285
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+++ G+ + G + + L SL + +I D G +++ + LTSL N
Sbjct: 154 QLTSLNIGGNRIGIKGAKLISEMKQLTSLH-TYNNRIGDEGAKYISEMKQLTSLDIG-GN 211
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G K +G+ L L + G + G+ +L SLNI N I D K +S
Sbjct: 212 QIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKLISGMKQLTSLNIG-VNEIGDEGAKLIS 270
Query: 178 GLTNLKSLQISCSKVTDSGIAYL 200
G+ L SLQI +++ D G Y+
Sbjct: 271 GMKRLTSLQIYNNRIGDEGAKYI 293
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 112/271 (41%), Gaps = 50/271 (18%)
Query: 6 ISQQIFN------ELV--YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDK---WM----- 49
IS+Q FN +LV + + TE +E F + VN K W+
Sbjct: 67 ISKQFFNVIRERSKLVIKFKKKFTEKRVELFMKSQFMNSI------VNVKFSSWLLDSFE 120
Query: 50 -DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
S+ L S+++ + + D G ++ + L SL+ +I G + + + L
Sbjct: 121 RAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIG-GNRIGIKGAKLISEMKQL 179
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
TSL NN I +G K + + L LD+ G + G+ +L SL+I + N I
Sbjct: 180 TSLH-TYNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHI-YNNRI 237
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV---- 224
D K +SG+ L SL I +++ D G + G+ RL L +
Sbjct: 238 GDEGAKLISGMKQLTSLNIGVNEIGDEGAKLISGMK-------------RLTSLQIYNNR 284
Query: 225 -------FLTSLQKLTLLNLEGCPVTAACLD 248
+++ +++LT LN+ G + L+
Sbjct: 285 IGDEGAKYISEMKQLTSLNIGGNELVMKELN 315
>gi|17549135|ref|NP_522475.1| GALA protein 1 [Ralstonia solanacearum GMI1000]
gi|17431386|emb|CAD18065.1| lrr-gala family type III effector protein (gala 1) [Ralstonia
solanacearum GMI1000]
Length = 661
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 164/371 (44%), Gaps = 42/371 (11%)
Query: 170 DSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
D+D++ L +L+ L + S V+ G+A+L L L + +R +H
Sbjct: 132 DADLEGLPA--SLRELDLFSTRYVSAKGLAHLSKLP-------LVRLKVRANGIHAEAAR 182
Query: 229 L----QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
LT L++ G + A +L+A S+ L+ + + G + +L L+
Sbjct: 183 ALAASTTLTALDIRGNGIGDAGAQALAANTSITSLDASFNDIGVAGARALAANTTLTSLD 242
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
LGFN I DE L L T+L SL + SC IGD G L L ++L+ +G G
Sbjct: 243 LGFNAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAE 302
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L+ T L S++L+ ISD LAG ++L SL ++ I G L T LT LD
Sbjct: 303 GLAANTVLTSLDLTRNSISDRGAAALAGNTTLTSLCVNFNDIYGRGARWLAENTTLTTLD 362
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-------- 456
+ I D GA L + LRSL + G + G + + ++LT L++S N
Sbjct: 363 ISYNPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGAQ 422
Query: 457 ---CNLTDKTLELIS------------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
N T TL L S T L SL++ +RI +AG + L +
Sbjct: 423 ALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALAD-----NTA 477
Query: 502 LESCKVTANDI 512
L + +VT N I
Sbjct: 478 LTTLRVTGNQI 488
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 170/378 (44%), Gaps = 29/378 (7%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+ LT+L R N I G +A A ++ LD G L L SL++ +
Sbjct: 188 TTLTALDIR-GNGIGDAGAQALAANTSITSLDASFNDIGVAGARALAANTTLTSLDLGF- 245
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N I D ++ L+ T+L SL + ++ D+G A L + + + + C+ I
Sbjct: 246 NAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHI--------- 296
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
EG + L+A L L+L R +SD G + +L L +
Sbjct: 297 ----------GEEGA-------EGLAANTVLTSLDLTRNSISDRGAAALAGNTTLTSLCV 339
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
FN+I L T L +L++ IGD G + L L+ L + ++G G R
Sbjct: 340 NFNDIYGRGARWLAENTTLTTLDISYNPIGDWGALGLADNMTLRSLSVVAGRIGVEGARA 399
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+G T L ++++S I + + LA ++L +L+L + ++ A + T L LD+
Sbjct: 400 LAGNTTLTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDI 459
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
RI +GA L + L +L + G + AG + + SLT LN+SQN ++ +
Sbjct: 460 GENRIEAAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQN-DIRSAGAQ 518
Query: 466 LISGLTGLVSLNVSNSRI 483
++ T L SL+VS++ I
Sbjct: 519 ALAANTSLTSLDVSSASI 536
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/452 (25%), Positives = 202/452 (44%), Gaps = 18/452 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++D+ G+ + D+G L +++ SLD +F I G L + LTSL N
Sbjct: 188 TTLTALDIRGNGIGDAGAQALAANTSITSLDASFN-DIGVAGARALAANTTLTSLDLGFN 246
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AI +G++A A +L L + C G L L S+++ CN I + + L
Sbjct: 247 -AIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLT-CNHIGEEGAEGL 304
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLL 235
+ T L SL ++ + ++D G A L G ++ + LC ++ +L LT L
Sbjct: 305 AANTVLTSLDLTRNSISDRGAAALAG---NTTLTSLCVNFNDIYGRGARWLAENTTLTTL 361
Query: 236 NLEGCPVTAACLDSLSALG-----SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
++ P+ ALG +L L++ ++ +G + +L L++ N I
Sbjct: 362 DISYNPI-----GDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAI 416
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
+E L L +L+L SC + L L++ + ++ ++G + L+ T
Sbjct: 417 GNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALADNT 476
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L ++ ++ I + LA SL LN+ I G AL + T LT LD+ A I
Sbjct: 477 ALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTSLTSLDVSSASI 536
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
+GA L ++ L I + DAG + + +LT L N + ++ ++
Sbjct: 537 GAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNF-IGTAGVQALAAN 595
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
T L SL++ +RI AG++ L L LT+
Sbjct: 596 TRLTSLSIWGNRIGDAGVKALAANTTLTKLTI 627
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 188/444 (42%), Gaps = 38/444 (8%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D +A+ +S+ S+D S +D+ +G L + L SLD F I D GL+ L
Sbjct: 199 GIGDAGAQALAAN-TSITSLDASFNDIGVAGARALAANTTLTSLDLGFN-AIGDEGLQAL 256
Query: 103 RGLSNLTSLSFRRN-----------------------NAITAQGMKAFAGLINLVKLDLE 139
++LTSL+ N I +G + A L LDL
Sbjct: 257 ATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLAANTVLTSLDLT 316
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IA 198
R + G L G L SL + + N I + L+ T L +L IS + + D G +
Sbjct: 317 RNSISDRGAAALAGNTTLTSLCVNF-NDIYGRGARWLAENTTLTTLDISYNPIGDWGALG 375
Query: 199 YLKGLSISSVIFILCSMII---RLFCLHVFLTSLQ-KLTLLNLEGCPVTAACLDSLSALG 254
+++ S+ + + + R + LT+L + + EG +L+A
Sbjct: 376 LADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGA-------QALAANA 428
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+L L+L C+L E F +L L++G N I L T L +L + I
Sbjct: 429 TLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALADNTALTTLRVTGNQI 488
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
G G L +L L +S + S+G + L+ T+L S+++S I + LA +
Sbjct: 489 GMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTSLTSLDVSSASIGAAGAQALAANT 548
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
S+ LN++ I D G AL + LT L I +G L L SL I G +
Sbjct: 549 SITWLNINDNHIGDAGAQALAAHPALTSLYACDNFIGTAGVQALAANTRLTSLSIWGNRI 608
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCN 458
DAGVK + ++LT L + + +
Sbjct: 609 GDAGVKALAANTTLTKLTIGKRVD 632
>gi|290989200|ref|XP_002677229.1| predicted protein [Naegleria gruberi]
gi|284090835|gb|EFC44485.1| predicted protein [Naegleria gruberi]
Length = 308
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 115/228 (50%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT L++ + + L L LN+N ++ +G + S++ L L++
Sbjct: 64 MKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDNC 123
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
EI E +L + +L +LN+ S IG EG+ ++ GL L L++S+ ++G G ++L
Sbjct: 124 EIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYLRE 183
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ L ++++S + + ++ + L SL++ I G ++ +T LT L++
Sbjct: 184 MRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTKLNMNCC 243
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
I G ++ N K L+ L I G + + G + I DL LT LN+ N
Sbjct: 244 NIGVEGVKHIINMKQLKHLIISGNNIGNKGCELILDLEQLTFLNIENN 291
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 120/251 (47%), Gaps = 1/251 (0%)
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
C+ F + L L++ +N + E ++ L L +LN++ I EG L+ L L
Sbjct: 58 CKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNT 117
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L + + ++G G ++LS + +L ++N+ I ++ + GLS L L++ +I + G
Sbjct: 118 LHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEG 177
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
L + L +LD+ + G Y+ K L SL I + G KHI +++ LT
Sbjct: 178 AKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTK 237
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
LN++ CN+ + ++ I + L L +S + I + G + L+ L L +E+ +
Sbjct: 238 LNMNC-CNIGVEGVKHIINMKQLKHLIISGNNIGNKGCELILDLEQLTFLNIENNNIDVE 296
Query: 511 DIKRLQSRDLP 521
I + S L
Sbjct: 297 GIAYIASGRLK 307
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 116/257 (45%), Gaps = 25/257 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
+ + +L +L+I + N + + K + L L +L I+ + +T G YL L
Sbjct: 61 FEWMKQLTNLSISYNN-MNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELE------ 113
Query: 211 ILCSMIIRLFCLHV-----------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
+L LH+ +L+ ++ LT LN+ + + + L L +L
Sbjct: 114 -------QLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFL 166
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
+++ ++ ++G + ++ L L++ N + + + ++ + L SL++ IG EG
Sbjct: 167 DISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGA 226
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+++ + L L ++ +G G++H+ + L+ + +S I + + L L L
Sbjct: 227 KHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIISGNNIGNKGCELILDLEQLTFL 286
Query: 380 NLDARQITDTGLAALTS 396
N++ I G+A + S
Sbjct: 287 NIENNNIDVEGIAYIAS 303
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---------------------- 92
Q L++++++G+ +T G +L + L +L + C
Sbjct: 87 QLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGS 146
Query: 93 -QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+I G++H+ GLS LT L NN I +G K + L LD+ G+ +
Sbjct: 147 NRIGVEGVKHIIGLSKLTFLDI-SNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYI 205
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
+ +L SL+I N I K +S +T L L ++C + G+ ++ + + I
Sbjct: 206 SEMKQLTSLSIA-VNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLII 264
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+ I C + L++LT LN+E
Sbjct: 265 SGNNIGNKGC--ELILDLEQLTFLNIE 289
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +D+S + + + G +L++ L +LD + + G+E++ + LTSLS
Sbjct: 161 SKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTN-ALRQQGIEYISEMKQLTSLSIAV- 218
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G K + + L KL++ C G+ ++ + +L+ L I N I + + +
Sbjct: 219 NLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIIS-GNNIGNKGCELI 277
Query: 177 SGLTNLKSLQISCSKVTDSGIAYL 200
L L L I + + GIAY+
Sbjct: 278 LDLEQLTFLNIENNNIDVEGIAYI 301
>gi|334119190|ref|ZP_08493277.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333458661|gb|EGK87278.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 489
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 178/368 (48%), Gaps = 59/368 (16%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
KL S+ + N +D+KPL LTNL L +S +++ D +K L
Sbjct: 81 AYQKLSSIEELYLNDKKINDIKPLESLTNLTGLVLSDNQIND-----IKPLE-------- 127
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
LT+L KL L N + + L +L +L L L+ ++SD +
Sbjct: 128 ------------SLTNLTKLYLGNNK-----IKDIKPLQSLTNLTQLGLHNTRISD--IK 168
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+ +L L+L N+ D + L+ LTNL L LD+ I D + L L NL L+
Sbjct: 169 PLQSLTNLTKLDLSNNKTLD--IKPLQSLTNLTKLYLDNNKIKD--IKPLESLTNLTHLQ 224
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L Q+ ++ L LTNL S++L ISD ++ L L+ L L LD +I+D +
Sbjct: 225 LMSNQIK--DIKPLESLTNLTSLHLYNNQISD--IKPLESLTKLTWLWLDNNKISD--IK 278
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L SLT LT + L +I+D L + NL SL + ++D +K ++ L+ LT L
Sbjct: 279 PLKSLTNLTEIKLGSNKISD--IKPLESLTNLTSLYLHNNQISD--IKPLESLTKLTSLW 334
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-- 510
L N K LE ++ LTG+V +SN+RI+ +KPL++L LTL +T N
Sbjct: 335 LINNQISDIKPLESLTNLTGIV---LSNNRISD-----IKPLESLNKLTL--LALTNNQI 384
Query: 511 -DIKRLQS 517
DIK L+S
Sbjct: 385 SDIKPLES 392
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 181/421 (42%), Gaps = 107/421 (25%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLV 134
+ D L+SL + +SD + ++ L +LT+L+ + NN I + +K L NL
Sbjct: 98 INDIKPLESLTNLTGLVLSDNQINDIKPLESLTNLTKLYLGNNKI--KDIKPLQSLTNLT 155
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+L L TRI SD+KPL LTNL L +S +K D
Sbjct: 156 QLGLHN-TRI--------------------------SDIKPLQSLTNLTKLDLSNNKTLD 188
Query: 195 SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
+K L SL LT L L+ + + L +L
Sbjct: 189 -----IKPLQ-----------------------SLTNLTKLYLDNNKIKD--IKPLESLT 218
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+L +L L Q+ D + + +L L+L N+I+D + L+ LT L L LD+ I
Sbjct: 219 NLTHLQLMSNQIKD--IKPLESLTNLTSLHLYNNQISD--IKPLESLTKLTWLWLDNNKI 274
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
D + L L NL ++L ++ S ++ L LTNL S+ L ISD ++ L L+
Sbjct: 275 SD--IKPLKSLTNLTEIKLGSNKI--SDIKPLESLTNLTSLYLHNNQISD--IKPLESLT 328
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L SL L QI+D + L SLT LT + L RI+D
Sbjct: 329 KLTSLWLINNQISD--IKPLESLTNLTGIVLSNNRISD---------------------- 364
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
+K ++ L+ LTLL L+ N K LE ++ LTG+V + S ++ +KPL
Sbjct: 365 ----IKPLESLNKLTLLALTNNQISDIKPLESLTNLTGIV--------LMSNQIQDIKPL 412
Query: 495 K 495
+
Sbjct: 413 Q 413
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 146/353 (41%), Gaps = 89/353 (25%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D LQSL + + + ++ ++ L +LT+L+ + + + +K L NL L L
Sbjct: 188 DIKPLQSLTNLTKLYLDNNKIKDIKPLESLTNLTHLQLMSNQIKDIKPLESLTNLTSLHL 247
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ + ++K L L L W + SD+KPL LTNL +++ +K++D
Sbjct: 248 -----YNNQISDIKPLESLTKLTWLWLDNNKISDIKPLKSLTNLTEIKLGSNKISD---- 298
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L+SL+ L SL+
Sbjct: 299 ---------------------------------------------IKPLESLTNLTSLY- 312
Query: 259 LNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L+ Q+SD E +K+ SL ++N N+I+D + L+ LTNL + L + I D
Sbjct: 313 --LHNNQISDIKPLESLTKLTSLWLIN---NQISD--IKPLESLTNLTGIVLSNNRISD- 364
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------------- 364
+ L L L L L++ Q+ S ++ L LTNL I L I D
Sbjct: 365 -IKPLESLNKLTLLALTNNQI--SDIKPLESLTNLTGIVLMSNQIQDIKPLQSLTNLTLL 421
Query: 365 -------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
++ L L++L L+L+ QI+D + L SLT LT + L G I
Sbjct: 422 ALTNNKISDIKPLQSLTNLTLLSLEKNQISD--IKPLESLTNLTEIRLSGNPI 472
>gi|428298451|ref|YP_007136757.1| small GTP-binding protein [Calothrix sp. PCC 6303]
gi|428234995|gb|AFZ00785.1| small GTP-binding protein [Calothrix sp. PCC 6303]
Length = 1408
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 208/453 (45%), Gaps = 49/453 (10%)
Query: 81 SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+NL LD +N +IS+ L L NLT + NN IT + A A LINL +LDL
Sbjct: 264 TNLTQLDLSYNQITKISEA----LAKLINLTQIILH-NNKIT-EIPDALAKLINLTQLDL 317
Query: 139 --ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT--D 194
+ T+I L L L +L I + N IT+ + ++ LTNL L +S +++T
Sbjct: 318 SYNQITKIPEALAKLTNLTQL----ILYSNQITEIP-EVIAKLTNLTQLDLSYNQITKIP 372
Query: 195 SGIAYLKGLS--------ISSVIFILCSMII---------RLFCLHVFLTSLQKLTLLNL 237
+A L L+ IS + L +I R+ + L L LT L+L
Sbjct: 373 EALAKLTNLTQLILYSNRISEIPEALAKLINLTQIILSYNRISEIPEALAKLTNLTQLDL 432
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+T ++L+ L +L + L+ ++++ E +K+ +L+ L L +N IT E
Sbjct: 433 SYNQITKIP-EALAKLINLTQIILHSNKITE-IPEALAKLTNLRQLYLSYNRIT-EIPEA 489
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG--SSGLRHLSGLTNLESI 355
L LTNL LNL I L L NL L+L+ ++ L L+ LT L
Sbjct: 490 LAKLTNLTQLNLSDNQIIKIPKA-LAKLSNLTQLDLNRNKITEIPEALAKLTNLTQLYLR 548
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
N T I + LA L++L L+L A+T LT LT L+L ++IT+
Sbjct: 549 NNRITEIPEA----LAKLTNLTQLDLGTNYNISEIPEAITKLTNLTQLNLTSSQITEIPE 604
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+ NL L + + + + I L++LT L L+ N + E I+ LT L
Sbjct: 605 V-IAKLTNLTQLNLTSNQIAEIP-EAIAKLTNLTQLILT--SNQITEIPEAIAKLTNLTQ 660
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
LN+++++IT + L NL L L ++T
Sbjct: 661 LNLTSNQITKIP-EAIAKLTNLTQLILSYNQIT 692
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 212/455 (46%), Gaps = 46/455 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + SNL L FN IS E + LSNL L +N IT + +A A L NL +L
Sbjct: 122 IANLSNLTQLYFNSN-HISKIP-ELIAKLSNLRELHVS-SNKIT-EIPEAIAKLSNLREL 177
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + T I + NL L +L N IT+ + ++ L NL+ LQ+S +K+T+
Sbjct: 178 HVSSNQITEIPEAIANLSNLRELHV----SSNQITEIP-EAIAKLINLRELQVSSNKITE 232
Query: 195 --SGIA--------YLKGLSISSVIFILCSM---------IIRLFCLHVFLTSLQKLTLL 235
IA YL+ I+ + ++ + ++ + L L LT +
Sbjct: 233 IPEVIAKLTNLRKLYLRNNQITEIPEVIAKLTNLTQLDLSYNQITKISEALAKLINLTQI 292
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
L +T D+L+ L +L L+L+ Q++ E +K+ +L L L N+IT+
Sbjct: 293 ILHNNKITEIP-DALAKLINLTQLDLSYNQIT-KIPEALAKLTNLTQLILYSNQITEIPE 350
Query: 296 VHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
V + LTNL L+L I E L LT L L +++ + L+ L NL
Sbjct: 351 V-IAKLTNLTQLDLSYNQITKIPEALAKLTNLTQLILYSNRISEIPEA----LAKLINLT 405
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
I LS+ IS+ LA L++L L+L QIT AL L LT + L +IT+
Sbjct: 406 QIILSYNRISEIP-EALAKLTNLTQLDLSYNQITKIP-EALAKLINLTQIILHSNKITEI 463
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A L NLR L + +T+ + + L++LT LNLS N + K + ++ L+ L
Sbjct: 464 PEA-LAKLTNLRQLYLSYNRITEIP-EALAKLTNLTQLNLSDNQII--KIPKALAKLSNL 519
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L+++ ++IT L L NL L L + ++T
Sbjct: 520 TQLDLNRNKITEIP-EALAKLTNLTQLYLRNNRIT 553
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 168/347 (48%), Gaps = 39/347 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +NL LD ++ QI+ E L L NLT + +N IT + +A A L NL +L
Sbjct: 421 LAKLTNLTQLDLSYN-QITKIP-EALAKLINLTQIILH-SNKIT-EIPEALAKLTNLRQL 476
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM----KPLSGLTNLKSLQISCS 190
L R T I L L L +L ++D+ + K L+ L+NL L ++ +
Sbjct: 477 YLSYNRITEIPEALAKLTNLTQL---------NLSDNQIIKIPKALAKLSNLTQLDLNRN 527
Query: 191 KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL---LNLEGCPVTAACL 247
K+T+ A K +++ +++ + I + LT+L +L L N+ P
Sbjct: 528 KITEIPEALAKLTNLTQ-LYLRNNRITEIPEALAKLTNLTQLDLGTNYNISEIP------ 580
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
++++ L +L LNL Q+++ E +K+ +L LNL N+I E + LTNL L
Sbjct: 581 EAITKLTNLTQLNLTSSQITE-IPEVIAKLTNLTQLNLTSNQIA-EIPEAIAKLTNLTQL 638
Query: 308 NLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L S I + E + LT L L T++ + ++ LTNL + LS+ I++
Sbjct: 639 ILTSNQITEIPEAIAKLTNLTQLNLTSNQITKIPEA----IAKLTNLTQLILSYNQITEI 694
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+A L++L L L + QIT+ A+T LT LT LDL RI++
Sbjct: 695 P-EAIAKLTNLTQLILTSNQITEIP-DAITKLTNLTQLDLSYNRISE 739
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 137/306 (44%), Gaps = 26/306 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTR 143
L +N +I + L L+NLT L+ N I KA A L NL +LDL R T
Sbjct: 478 LSYNRITEIPEA----LAKLTNLTQLNLSDNQIIKIP--KALAKLSNLTQLDLNRNKITE 531
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
I L L L +L N N IT+ + L+ LTNL L + + + L
Sbjct: 532 IPEALAKLTNLTQLYLRN----NRITEIP-EALAKLTNLTQLDLGTNYNISEIPEAITKL 586
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
+ + + + S I + + LT+L T LNL + A ++++ L +L L L
Sbjct: 587 TNLTQLNLTSSQITEIPEVIAKLTNL---TQLNLTSNQI-AEIPEAIAKLTNLTQLILTS 642
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
Q+++ E +K+ +L LNL N+IT E + L LT L L+ + E +
Sbjct: 643 NQITE-IPEAIAKLTNLTQLNLTSNQITKIPEAIAKLTNLTQL-ILSYNQITEIPEAIAK 700
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
LT L L T++ + ++ LTNL ++LS+ IS+ L L + LN
Sbjct: 701 LTNLTQLILTSNQITEIPDA----ITKLTNLTQLDLSYNRISEIPLEILDSKDPKEILNY 756
Query: 382 DARQIT 387
RQI+
Sbjct: 757 -LRQIS 761
>gi|413916550|gb|AFW56482.1| hypothetical protein ZEAMMB73_356315 [Zea mays]
Length = 660
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 143/499 (28%), Positives = 227/499 (45%), Gaps = 50/499 (10%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L S L+ L + C+
Sbjct: 108 RSVCLARANGVGWRGLEALVAACPKLAAVDLSHCVTAGDREAAALAAASELRDLRLDKCL 167
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 168 AVTDMGLAKVAVGCPKLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLGS 227
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSV 208
+ L +LE L + C+ I D ++ LS G +L+S+ +S C VT G+A L I
Sbjct: 228 ISSLERLEELAMVCCSGIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASL----IDGR 283
Query: 209 IFILCSMIIRLFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
F+ + CLH FL+ L +L +T LD L SL
Sbjct: 284 NFL--QKLYAADCLHEIGQRFLSKLARLKET------LTLLKLDGLEVSDSLL------- 328
Query: 265 QLSDDGCEKFSKIGSLK---VLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLV 320
Q + C K +IG K V + G + + C ++L +++L C I + L
Sbjct: 329 QAIGESCNKLVEIGLSKCSGVTDGGISSLVARC-------SDLRTIDLTCCNLITNNALD 381
Query: 321 NLTGLCN-LKCLEL-SDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLK 377
++ C L+CL L S + + GL ++ NL+ I+L+ G+ D +L+ LA S L+
Sbjct: 382 SIADNCKMLECLRLESCSLINEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSELR 441
Query: 378 SLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-G 432
L L I+D G+A ++S G L LDL+ ITD G A L N K ++ L +C
Sbjct: 442 ILKLGLCSSISDRGIAFISSNCGKLVELDLYRCNSITDDGLAALANGCKRIKLLNLCYCN 501
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRH 490
+TD G+ H+ L LT L L +T + ++ G L+ L++ + AGL
Sbjct: 502 KITDTGLGHLGSLEELTNLELRCLVRVTGIGISSVAIGCKNLIELDLKRCYSVDDAGLWA 561
Query: 491 LKPLK-NLRSLTLESCKVT 508
L NLR LT+ C+VT
Sbjct: 562 LARYALNLRQLTISYCQVT 580
>gi|291230586|ref|XP_002735244.1| PREDICTED: partner of paired-like [Saccoglossus kowalevskii]
Length = 396
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 161/346 (46%), Gaps = 76/346 (21%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
NLQSL+ + C ++D GL H +R + +LT L+ IT + A + NL LDL
Sbjct: 93 NLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNLEHLDL 152
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
C I G L+ GL KL LN++ SC V+DSG
Sbjct: 153 GGCCNITNTGLLLIAWGLTKLRYLNLR------------------------SCRHVSDSG 188
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
IA+L GL+ + L F H+ L QKLT L A L++ L L
Sbjct: 189 IAHLAGLTKNDAGGTL-------FLQHLVLQDCQKLTDL---------ALLNAARGLVKL 232
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIG 315
LNL+ C ITD +VHL + +L+ LNL SC I
Sbjct: 233 ESLNLSFC-----------------------GGITDSGMVHLSRMPSLKELNLRSCDNIS 269
Query: 316 DEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGIS-DGSLRKLA 371
D G+ +L G L+ L++S +VG + L H++ G+ +L SI+LS I+ DG R +
Sbjct: 270 DIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARLVR 329
Query: 372 GLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDLFG-ARITDSG 414
L LK+LN+ +ITD GL + T+L L+ +DL+G +IT G
Sbjct: 330 TLRDLKTLNIGQCSRITDEGLGLIATNLRKLSCIDLYGCTKITTVG 375
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 143/307 (46%), Gaps = 68/307 (22%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G ++T++GL+ + + L+ L+ C +SD G+ H
Sbjct: 132 ITDSSLGRIAQYLRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAH 191
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L GL+ +N+A G + L L L+ C ++ L+N +GL+KLES
Sbjct: 192 LAGLT--------KNDA---------GGTLFLQHLVLQDCQKLTDLALLNAARGLVKLES 234
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI-------AYLKGLSISSVIFI 211
LN+ +C ITDS M LS + +LK L + SC ++D GI AYL+ L +S
Sbjct: 235 LNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDVS----- 289
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
FC V SL + + SL ++L+ C ++DDG
Sbjct: 290 --------FCDKVGDASLTHIA-----------------QGMYSLMSISLSSCPITDDGM 324
Query: 272 EKFSK-IGSLKVLNLG-FNEITDECLVHLKGL--TNLESLN-LDSCGIGDEGLVNLTGLC 326
+ + + LK LN+G + ITDE L GL TNL L+ +D G V L +
Sbjct: 325 ARLVRTLRDLKTLNIGQCSRITDEGL----GLIATNLRKLSCIDLYGCTKITTVGLEKIM 380
Query: 327 NLKCLEL 333
L CL +
Sbjct: 381 QLPCLSV 387
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 172/392 (43%), Gaps = 76/392 (19%)
Query: 134 VKLDLERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
KL L R + LVN +G+ +++ L++K S + G+ NL+SL +S C
Sbjct: 52 AKLHLRRANPSLFPSLVN-RGIRRVQILSLK------RSLSSVVQGMHNLQSLNLSGCYN 104
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
+TD G+A H F+ + LT+LNL C S
Sbjct: 105 LTDVGLA------------------------HAFVREMPSLTVLNLSLCKQITD-----S 135
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
+LG + N L GC + G L + GLT L LNL S
Sbjct: 136 SLGRIAQYLRNLEHLDLGGCCNITNTGLLLIA---------------WGLTKLRYLNLRS 180
Query: 312 C-GIGDEGLVNLTGLCN--------LKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFT 360
C + D G+ +L GL L+ L L D Q + L GL LES+NLSF
Sbjct: 181 CRHVSDSGIAHLAGLTKNDAGGTLFLQHLVLQDCQKLTDLALLNAARGLVKLESLNLSFC 240
Query: 361 G-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAA 416
G I+D + L+ + SLK LNL + I+D G+A L L LD+ F ++ D+
Sbjct: 241 GGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLT 300
Query: 417 YL-RNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
++ + +L S+ + +TD G+ ++ L L LN+ Q +TD+ L LI+ T L
Sbjct: 301 HIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSRITDEGLGLIA--TNLR 358
Query: 475 SLNVSN----SRITSAGLRHLKPLKNLRSLTL 502
L+ + ++IT+ GL + L L L L
Sbjct: 359 KLSCIDLYGCTKITTVGLEKIMQLPCLSVLNL 390
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 132/257 (51%), Gaps = 38/257 (14%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 348
++G+ NL+SLNL C + D GL + LT L C +++D+ +G R
Sbjct: 88 VQGMHNLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLG----RIAQY 143
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTG------ 399
L NLE ++L I++ L +A GL+ L+ LNL + R ++D+G+A L LT
Sbjct: 144 LRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGT 203
Query: 400 --LTHLDLFG-ARITDSGAAYLRNFKNLRSLE-----ICGGGLTDAGVKHIKDLSSLTLL 451
L HL L ++TD A L + L LE CGG +TD+G+ H+ + SL L
Sbjct: 204 LFLQHLVLQDCQKLTD--LALLNAARGLVKLESLNLSFCGG-ITDSGMVHLSRMPSLKEL 260
Query: 452 NLSQNCNLTDKTL-ELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
NL N++D + L G L +L+VS ++ A L H+ + + +L S++L SC +T
Sbjct: 261 NLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPIT 320
Query: 509 ANDIKRLQS--RDLPNL 523
+ + RL RDL L
Sbjct: 321 DDGMARLVRTLRDLKTL 337
>gi|290987592|ref|XP_002676506.1| predicted protein [Naegleria gruberi]
gi|284090109|gb|EFC43762.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 24/230 (10%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+++LT L++ ++ + + L YLN+N + + G + SK+ L LN+
Sbjct: 53 FIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKLNQLITLNI 112
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G N I ++ ++ + L LN+ SC IG+ G H
Sbjct: 113 GLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRG------------------------ANH 148
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S + L S+N G+ D ++ ++ L+ L LN+ I++ GL ++ + + HLD+
Sbjct: 149 ISRMKQLISLNTGRNGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDI 208
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
I D GA + K L L+I + + G K+I ++ LT L++ +
Sbjct: 209 SNNFIDDEGAEIISRMKQLTRLDISNNSIGEEGTKYISEMKKLTYLDIGE 258
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 105/215 (48%), Gaps = 1/215 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L L + IGD+ + L L++ + G + + +T L +N++
Sbjct: 32 MKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTN 91
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+ + + ++ L+ L +LN+ I + G ++ + LT L+++ I + GA ++
Sbjct: 92 NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISR 151
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L SL GL D GVK+I +L+ L LN++ + N++++ L ISG+ ++ L++SN
Sbjct: 152 MKQLISLNTGRNGLDDEGVKYISELNQLNFLNIA-DSNISEEGLNYISGMKQIIHLDISN 210
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ I G + +K L L + + + K +
Sbjct: 211 NFIDDEGAEIISRMKQLTRLDISNNSIGEEGTKYI 245
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F+ + +LT LN+ V +S L L LN+ + + G E S++ L LN
Sbjct: 76 FIGEMTQLTYLNVNTNNVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLN 135
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ I + H+ + L SLN G+ DEG+ ++ L L L ++D+ + GL
Sbjct: 136 IYSCNIGNRGANHISRMKQLISLNTGRNGLDDEGVKYISELNQLNFLNIADSNISEEGLN 195
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++SG+ + +++S I D ++ + L L++ I + G ++ + LT+LD
Sbjct: 196 YISGMKQIIHLDISNNFIDDEGAEIISRMKQLTRLDISNNSIGEEGTKYISEMKKLTYLD 255
Query: 405 L 405
+
Sbjct: 256 I 256
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 104/229 (45%), Gaps = 1/229 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+ L L + + D + F ++ L L++ N I+ E + +T L LN+
Sbjct: 29 FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNV 88
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
++ +G+ G ++ L L L + +G G ++S + L +N+ I +
Sbjct: 89 NTNNVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANH 148
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
++ + L SLN + D G+ ++ L L L++ + I++ G Y+ K + L+I
Sbjct: 149 ISRMKQLISLNTGRNGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDI 208
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
+ D G + I + LT L++S N + ++ + IS + L L++
Sbjct: 209 SNNFIDDEGAEIISRMKQLTRLDISNNS-IGEEGTKYISEMKKLTYLDI 256
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
D+G+ ++ LT L + I D A K L SL++ ++ G K I +++
Sbjct: 25 DSGI--FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQ 82
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
LT LN++ N N+ + + IS L L++LN+ + I G ++ +K L L + SC +
Sbjct: 83 LTYLNVNTN-NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNI 141
Query: 508 ---TANDIKRLQS 517
AN I R++
Sbjct: 142 GNRGANHISRMKQ 154
>gi|290971703|ref|XP_002668623.1| predicted protein [Naegleria gruberi]
gi|284082100|gb|EFC35879.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ +S + L S+N+S GI D + ++ + L SL++ A QI D G L+ + LT L
Sbjct: 126 KFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSL 185
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
D+ I D GA YL K L SL I G D G K+I ++ LT L++S + +
Sbjct: 186 DISANLIGDEGAKYLSEMKQLISLNI-GKNEIDEGAKYISEMKQLTSLDISY-TQVDVEG 243
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
++ IS + L SLN+ +RI G++ + +K L+SL +
Sbjct: 244 VKFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ GIGDE ++ + L L++S Q+G G ++LS + L S+++S
Sbjct: 131 MKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISAN 190
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I D + L+ + L SLN+ +I D G ++ + LT LD+ ++ G ++
Sbjct: 191 LIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKFISE 249
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ L SL ICG + GVK I ++ L L++S N
Sbjct: 250 MRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYN 285
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 1/168 (0%)
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ L LN+ N I DE + + L SL++ + IGDEG L+ + L L++S
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDIS 188
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+G G ++LS + L S+N+ I +G+ + ++ + L SL++ Q+ G+ +
Sbjct: 189 ANLIGDEGAKYLSEMKQLISLNIGKNEIDEGA-KYISEMKQLTSLDISYTQVDVEGVKFI 247
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
+ + LT L++ G RI G ++ K L+SL+I + G K I
Sbjct: 248 SEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+S + L LN++ + D+ + S++ L L++ N+I DE +L + L SL++
Sbjct: 128 ISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDI 187
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ IGDEG L+ + L L + ++ G +++S + L S+++S+T + ++
Sbjct: 188 SANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKF 246
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
++ + L SLN+ +I G+ ++ + L LD+ RI GA ++
Sbjct: 247 ISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 1/162 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++L LN+ G + +S + L L+++ Q+ D+G + S++ L L+
Sbjct: 127 FISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLD 186
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I DE +L + L SLN+ I DEG ++ + L L++S TQV G++
Sbjct: 187 ISANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVK 245
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+S + L S+N+ I ++ ++ + LKSL++ +I
Sbjct: 246 FISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRI 287
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLNI N I D + K +S + L SL IS +++ D G Y
Sbjct: 131 MKQLISLNIS-GNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKY-------------- 175
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
L+ +++LT L++ + LS + L LN+ + ++ D+G +
Sbjct: 176 ------------LSEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKY 222
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCL 331
S++ L L++ + ++ E + + + L SLN+ CG IG EG+ ++ + LK L
Sbjct: 223 ISEMKQLTSLDISYTQVDVEGVKFISEMRQLTSLNI--CGNRIGIEGVKFISEVKQLKSL 280
Query: 332 ELSDTQVGSSGLRHL 346
++S ++G G + +
Sbjct: 281 DISYNRIGVEGAKFI 295
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ I S+ L S+D+S + + D G +L + L SLD + + I D G ++L
Sbjct: 143 GIGDEEAKFI-SEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISANL-IGDEGAKYL 200
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ L SL+ +N +G K + + L LD+ G+ + + +L SLNI
Sbjct: 201 SEMKQLISLNIGKNE--IDEGAKYISEMKQLTSLDISYTQVDVEGVKFISEMRQLTSLNI 258
Query: 163 KWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C N I +K +S + LKSL IS +++ G ++
Sbjct: 259 --CGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+++SG+ + D + + L SLD + QI D G ++L + LTSL
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDIS-ANQIGDEGAKYLSEMKQLTSLDI 187
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L+ L++ + I G + + +L SL+I + + +
Sbjct: 188 SA-NLIGDEGAKYLSEMKQLISLNIGK-NEIDEGAKYISEMKQLTSLDISYTQVDVEG-V 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAY------LKGLSIS 206
K +S + L SL I +++ G+ + LK L IS
Sbjct: 245 KFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDIS 283
>gi|290997297|ref|XP_002681218.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
gi|284094841|gb|EFC48474.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
Length = 342
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 25/242 (10%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
++ + L LN+ ++ D+G + S++ L LN+ NEI DE + + L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
IGDEG ++ + L L + T +G G + +S + L +N+ +
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYN--------- 234
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L G+ G ++ + LT LD+ I GA ++ K L SL I
Sbjct: 235 LIGIE---------------GAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNI 279
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ D G K I ++ LT LN+S N D+ + IS + L SL++SN+RI G +
Sbjct: 280 NYNEIGDRGAKFISEMKQLTSLNISYNIT-GDRGAKFISEMKQLTSLDISNNRICDEGAK 338
Query: 490 HL 491
++
Sbjct: 339 YI 340
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 106/217 (48%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+T +++LT LN+ G + +S + L LN+ ++ D+G + S++ L L++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N I DE ++ + L SLN+ IG EG ++ + L L + +G G +
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S + L +++S I + ++ + L SLN++ +I D G ++ + LT L++
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
D GA ++ K L SL+I + D G K+I
Sbjct: 304 SYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 9/208 (4%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
+T + L L + ++G G +++S + L S+N+ I D + ++ + L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+I D G ++ + LT L+++ I GA ++ K L L I + G K
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
I ++ LTLL++S N + + + IS + L SLN++ + I G + + +K L SL
Sbjct: 244 ISEMKQLTLLDISNN-EIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLN 302
Query: 502 LESCKVTAN-------DIKRLQSRDLPN 522
+ S +T + ++K+L S D+ N
Sbjct: 303 I-SYNITGDRGAKFISEMKQLTSLDISN 329
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 51/265 (19%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLNI+ N I D K +S + L SL I +++ D G
Sbjct: 127 MKQLTSLNIR-GNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAK--------------- 170
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
F++ +++LT L++ G + +S + L LN+ + +G +
Sbjct: 171 -----------FISEMKQLTSLDIRGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKF 219
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S++ L +LN+ +N I E + + L L++ + IG EG ++ + L L +
Sbjct: 220 ISEMKQLTLLNIYYNLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNI 279
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
+ ++G G + +S + L S+N+S+ + G D G
Sbjct: 280 NYNEIGDRGAKFISEMKQLTSLNISYN---------ITG---------------DRGAKF 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYL 418
++ + LT LD+ RI D GA Y+
Sbjct: 316 ISEMKQLTSLDISNNRICDEGAKYI 340
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 52/254 (20%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G +++ + LTSL+ R N I +G K + + L LD I G
Sbjct: 139 RIGDEGAKYISEMKQLTSLNIRE-NEIGDEGAKFISEMKQLTSLD------IRG------ 185
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
N I D K +S + L SL I + + GI K
Sbjct: 186 -------------NRIGDEGAKYISEMKQLTSLNIYYTLI---GIEGAK----------- 218
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
F++ +++LTLLN+ + +S + L L+++ ++ +G +
Sbjct: 219 ------------FISEMKQLTLLNIYYNLIGIEGAKFISEMKQLTLLDISNNEIGIEGAK 266
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
S++ L LN+ +NEI D + + L SLN+ GD G ++ + L L+
Sbjct: 267 FISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLD 326
Query: 333 LSDTQVGSSGLRHL 346
+S+ ++ G +++
Sbjct: 327 ISNNRICDEGAKYI 340
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ G+ + D G ++ + L SL+ + + I G + + + LT L+
Sbjct: 173 SEMKQLTSLDIRGNRIGDEGAKYISEMKQLTSLNIYYTL-IGIEGAKFISEMKQLTLLNI 231
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 232 YY-NLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINY-NEIGDRGA 289
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL 200
K +S + L SL IS + D G ++
Sbjct: 290 KFISEMKQLTSLNISYNITGDRGAKFI 316
>gi|259489824|ref|NP_001159243.1| uncharacterized protein LOC100304332 [Zea mays]
gi|223942967|gb|ACN25567.1| unknown [Zea mays]
gi|413920256|gb|AFW60188.1| hypothetical protein ZEAMMB73_234209 [Zea mays]
Length = 648
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 138/490 (28%), Positives = 233/490 (47%), Gaps = 41/490 (8%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISD 96
L + GV + +D + + SL +VDLS D + L + L+ L + C+ ++D
Sbjct: 101 LARASGVGWRGLDALVAACPSLEAVDLSHCVAAGDREMAALAAAAGLRDLVMDKCLGVTD 160
Query: 97 GGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGL 154
GL + G L SLS + I+ G+ A L LD+ + L +L L
Sbjct: 161 VGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISYLKVTNESLRSLSTL 220
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLSISSVIFIL 212
KLE + + C + D ++ LS ++L+S+ ++ C V+ G+A L G I +
Sbjct: 221 EKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLASLMDGQRSLRKINVA 280
Query: 213 CSMIIRLFCLHVFLTSL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
S+ C+ L+++ + LT+L L+G + A+ +L A+GS C
Sbjct: 281 HSLHEIEACVLSKLSTIGETLTVLRLDGLEIFAS---NLQAIGS--------------TC 323
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGI-GDEGLVNLTGLC-NL 328
+ +IG K N +TD+ +V L +L ++++ C + + L + C +
Sbjct: 324 KNLVEIGLSKC-----NGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKI 378
Query: 329 KCLELSDTQ-VGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQ 385
+CL L V GL ++ L ++L+ I+L+ I+D +L++LA S L L L
Sbjct: 379 ECLRLESCPFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSS 438
Query: 386 ITDTGLAALTSLTG-LTHLDLFG-ARITDSG-AAYLRNFKNLRSLEICG-GGLTDAGVKH 441
I+D GL +++ G L LDL+ + +TD G AA K +R L +C +TD G+KH
Sbjct: 439 ISDEGLVYISANCGKLVELDLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKH 498
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL-KPLKNLR 498
+ L L L L +T + I+ G + LV L++ + AGL L + +NLR
Sbjct: 499 VGGLEELANLELRCLVRVTGVGITSIAVGCSSLVELDLKRCYSVDDAGLWALSRYSQNLR 558
Query: 499 SLTLESCKVT 508
LT+ C+VT
Sbjct: 559 QLTVSYCQVT 568
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 122/447 (27%), Positives = 209/447 (46%), Gaps = 39/447 (8%)
Query: 11 FNELVYSRCL--TEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
+LV +CL T+V L A LQ L L ++D +D++A + L S+D+S
Sbjct: 147 LRDLVMDKCLGVTDVGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISY 206
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
VT+ L L L+ + C+ + D GL+ L S+L S+ R + +++ G+ +
Sbjct: 207 LKVTNESLRSLSTLEKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLAS 266
Query: 127 FA-GLINLVKL-------DLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPL- 176
G +L K+ ++E C + +++L+ L I S+++ +
Sbjct: 267 LMDGQRSLRKINVAHSLHEIEACVLSKLSTIGETLTVLRLDGLE------IFASNLQAIG 320
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLSIS-SVIFILCSMIIRLFCLHVFLTSLQKLTL 234
S NL + +S C+ VTD GI L I + C ++ L + +K+
Sbjct: 321 STCKNLVEIGLSKCNGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIEC 380
Query: 235 LNLEGCP-VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEIT 291
L LE CP V+ L+S++ L S L ++L C+++D ++ + L +L LG + I+
Sbjct: 381 LRLESCPFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSIS 440
Query: 292 DECLVHLKG-LTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLS 347
DE LV++ L L+L C + D+GL + C ++ L L TQ+ GL+H+
Sbjct: 441 DEGLVYISANCGKLVELDLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVG 500
Query: 348 GLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT-GLT 401
GL L ++ L TG+ S+ G SSL L+L + D GL AL+ + L
Sbjct: 501 GLEELANLELRCLVRVTGVGITSIA--VGCSSLVELDLKRCYSVDDAGLWALSRYSQNLR 558
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLE 428
L + ++T G +L +LR L+
Sbjct: 559 QLTVSYCQVTGLGLCHL--LGSLRCLQ 583
>gi|343420997|emb|CCD18942.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 623
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 235/487 (48%), Gaps = 78/487 (16%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 7 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 57
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L
Sbjct: 58 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLN 114
Query: 187 -ISCSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
+ C+ +TD S I+ L+ L +S C+ I + L +++L L L + G
Sbjct: 115 LMYCTGITDVSPLSLISNLRTLDLSH-----CTGITDVLPLS-LMSNLCSLYLSHCTG-- 166
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG 300
+T LS L L LNL C D SK+ L+ LNL + ITD + L
Sbjct: 167 ITDV--PPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSL 221
Query: 301 LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
++NL +L+L C GI D ++ L+ + NL + LS G + + LS L+ LE++NL +
Sbjct: 222 ISNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCT-GITDVPPLSKLSRLETLNLMY 278
Query: 360 -TGISDGSLRKLAGLSSLKSLNL-DARQITD------------------TGLAALTSLTG 399
TGI+D S L+ LS L++LNL ITD TG+ + L+
Sbjct: 279 CTGITDVS--PLSKLSRLETLNLMYCTGITDVSPLSLMSNLCSLYLSHCTGITDVPPLSK 336
Query: 400 LTHLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 454
L+ L+ ++ ITD + L L L++ G G+TD V + DLS+L L+LS
Sbjct: 337 LSRLETLNLMYCTGITD--VSPLSLMSRLEMLDVSGCTGITD--VSPLSDLSNLRTLDLS 392
Query: 455 QNCNLTDKTLELISGLTGLVSLN----VSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
+TD +S L+ ++ L + + IT L LK +K L L L C +
Sbjct: 393 YCTGITD-----VSPLSEIIELANLYMIGLTSITDVSL--LKKVKKLEVLYLSGCT-SIT 444
Query: 511 DIKRLQS 517
D+ L +
Sbjct: 445 DVSPLST 451
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 137/429 (31%), Positives = 213/429 (49%), Gaps = 49/429 (11%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
+C I+D + L +SNL +L IT + + + NL + L CT I +
Sbjct: 2 YCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVLPLSLMSNLCSVYLSHCTGI-TDVP 56
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLS-ISS 207
L L +LE+LN+ +C IT D+ PLS L+ L++L + C+ +TD ++ L LS + +
Sbjct: 57 PLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLET 112
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
+ + C+ I + L + L L+L C L LS + +L L L+ C
Sbjct: 113 LNLMYCTGITDVSPLSLI----SNLRTLDLSHCTGITDVL-PLSLMSNLCSLYLSHCTGI 167
Query: 268 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 325
D SK+ L+ LNL + ITD + L L+ LE+LNL C GI D ++L
Sbjct: 168 TD-VPPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITDVSPLSLIS- 223
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDAR 384
NL+ L+LS G + + LS ++NL S+ LS TGI+D + L+ LS L++LNL
Sbjct: 224 -NLRTLDLSHCT-GITDVLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNL--- 276
Query: 385 QITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGV 439
+ TG+ ++ L+ L+ L+ ++ ITD + L NL SL + G+TD V
Sbjct: 277 -MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--V 331
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---LKN 496
+ LS L LNL +TD + +S ++ L L+VS G+ + P L N
Sbjct: 332 PPLSKLSRLETLNLMYCTGITD--VSPLSLMSRLEMLDVSG----CTGITDVSPLSDLSN 385
Query: 497 LRSLTLESC 505
LR+L L C
Sbjct: 386 LRTLDLSYC 394
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 207/456 (45%), Gaps = 83/456 (18%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 214 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 264
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L CT I + L L +LE+LN+ +C ITD + PLS ++NL SL
Sbjct: 265 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLY 321
Query: 187 IS-CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
+S C+ +TD + L LS + ++ + C+ I + L + + +L +L++ GC
Sbjct: 322 LSHCTGITD--VPPLSKLSRLETLNLMYCTGITDVSPLSL----MSRLEMLDVSGC-TGI 374
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTN 303
+ LS L +L L+L+ C D S+I L L + G ITD L LK +
Sbjct: 375 TDVSPLSDLSNLRTLDLSYCTGITD-VSPLSEIIELANLYMIGLTSITDVSL--LKKVKK 431
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 362
LE L L C S T V LS L+ LE ++L + TGI
Sbjct: 432 LEVLYLSGCT--------------------SITDVSP-----LSTLSGLEKLDLRYCTGI 466
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
+D S L+ LS L+ LD R T T ++ L++L+GL LDL G
Sbjct: 467 TDVS--PLSTLSGLE--KLDLRYCTGITDVSPLSTLSGLGKLDLSGCT------------ 510
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
G+TD V + LS L L+LS+ C ++ + L L L +S
Sbjct: 511 -----------GITD--VSPLSTLSRLETLDLSE-CPGVMSDVDSLCSLRMLRELRLSRL 556
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
I A LR + LK LR+L L C D+ L +
Sbjct: 557 AINDAVLRDIVVLKCLRTLDLSHCT-DVTDVSPLST 591
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 124/277 (44%), Gaps = 66/277 (23%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG-----LE----HLRGLSNLTSL 111
+D+SG + +TD L D SNL++LD ++C I+D +E ++ GL+++T +
Sbjct: 366 LDVSGCTGITDVS--PLSDLSNLRTLDLSYCTGITDVSPLSEIIELANLYMIGLTSITDV 423
Query: 112 SFRR----------NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
S + + + + + L L KLDL CT I + L L LE L+
Sbjct: 424 SLLKKVKKLEVLYLSGCTSITDVSPLSTLSGLEKLDLRYCTGI-TDVSPLSTLSGLEKLD 482
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
+++C ITD + PLS L+ L L +S C+ +TD
Sbjct: 483 LRYCTGITD--VSPLSTLSGLGKLDLSGCTGITDVS------------------------ 516
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
L++L +L L+L CP + +DSL +L L L L+R ++D + L
Sbjct: 517 ----PLSTLSRLETLDLSECPGVMSDVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCL 572
Query: 281 KVLNLGF-NEITD----------ECLVHLKGLTNLES 306
+ L+L ++TD E LV L+G T L S
Sbjct: 573 RTLDLSHCTDVTDVSPLSTVIRLEVLV-LRGYTGLRS 608
>gi|290993827|ref|XP_002679534.1| predicted protein [Naegleria gruberi]
gi|284093151|gb|EFC46790.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 17/208 (8%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L G+ NL L +S Q+G G + +SG+ LE + L F + + ++ + +L SL +
Sbjct: 40 LQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFNNVGTEGAKYISEMENLTSLII 99
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG--------- 432
+ I D G L+ + LT+LD+ I + G +RN LRS CG
Sbjct: 100 RSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIRNMTQLRSFVDCGSCALEEVSKM 159
Query: 433 -GLTDAGVKH------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
LT V H I ++LT L++ C + D LELIS L L VSN+ ITS
Sbjct: 160 DQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTC-IGDNELELISKYPKLTKLFVSNNFITS 218
Query: 486 AGLRHLKPLKNLRSLTLESCKVTANDIK 513
G++ L +K L++L + + +K
Sbjct: 219 EGVKPLSEMKQLKALHIGDNGINEEGVK 246
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 18/260 (6%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
FL ++ +L + L+ + +L + +L LN++ Q+ +G + S + L+ L
Sbjct: 14 FLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKL 73
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
L FN + E ++ + NL SL + S IGDEG ++L+G+ L L++SD + G+
Sbjct: 74 ILVFNNVGTEGAKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGM 133
Query: 344 RHLSGLTNLESI---------------NLSFTGISDG-SLRKLAGLSSLKSLNLDARQIT 387
R + +T L S L++ +S S + ++L L++ I
Sbjct: 134 RAIRNMTQLRSFVDCGSCALEEVSKMDQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTCIG 193
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
D L ++ LT L + IT G L K L++L I G+ + GVK I ++
Sbjct: 194 DNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQ 253
Query: 448 LTLLNLSQNCNLTDKTLELI 467
LT LN+ + N+++ E++
Sbjct: 254 LTELNV-EGLNISENDREVL 272
>gi|320163275|gb|EFW40174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 989
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 8/223 (3%)
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNL 328
G + + +L+VL+LG + D+ + + L L LNL+ I D GL L L L
Sbjct: 529 GINHIAGLNNLRVLDLGITRLNDQAMPTISQLP-LTVLNLERTLITDSGLARLAPLGATL 587
Query: 329 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
+ L++SD +++ GL L+ L + L+ G+ + +L+ L+SLNL I
Sbjct: 588 QHLDISDCSKLTERGLALLAAFPQLRT--LAIAGLPLTDVGRLSNFPELRSLNLARTAIV 645
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLS 446
+ L ++ L HL L ++ D+ YL+ NL SL++ + ++ + HI L
Sbjct: 646 EGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKL- 704
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGL 488
LT L+L+ ++TD+ ++ IS L LVSL++SN+++TSAG+
Sbjct: 705 PLTELDLTDYIHVTDEGIQFISALAPTLVSLSLSNTKLTSAGI 747
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 116/433 (26%), Positives = 194/433 (44%), Gaps = 61/433 (14%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
+++ Q+ +LV + L++ ++ F C LQ + L YP
Sbjct: 460 QEVGMQLMAQLVRDKQLSDKNMGVFLPCHLQVIRLDAYPY-------------------- 499
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF---RRNNAIT 120
VT+ L ++ S LQ L ++ G+ H+ GL+NL L R N+
Sbjct: 500 -----VTNELLCAMRFFSLLQELSIRSAEFVTHVGINHIAGLNNLRVLDLGITRLND--- 551
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGL 179
Q M + L L L+LER GL L L L+ L+I C+ +T+ + L+
Sbjct: 552 -QAMPTISQL-PLTVLNLERTLITDSGLARLAPLGATLQHLDISDCSKLTERGLALLAAF 609
Query: 180 TNLKSLQISCSKVTDSG----IAYLKGLSISSVIFI---LCSMIIRLFCLHVFLTS---- 228
L++L I+ +TD G L+ L+++ + L S+ + +H+ L +
Sbjct: 610 PQLRTLAIAGLPLTDVGRLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTKLG 669
Query: 229 ------LQKLTLLNLEGCP----VTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKI 277
LQ LT L+ P + + + +S L L L+L + ++D+G + S +
Sbjct: 670 DNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKL-PLTELDLTDYIHVTDEGIQFISAL 728
Query: 278 G-SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
+L L+L ++T + + T LE L LD + D+ + L L L+ L LS T
Sbjct: 729 APTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLRTLSLSRT 788
Query: 337 QVGSSGLRH--LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ S+ +R S T LES+NLS+T I + L +L L L +LNLD+ ++T L
Sbjct: 789 HLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQL-RLPMLTTLNLDSTRVTANVPLML 847
Query: 395 TSLTGLTHLDLFG 407
T L LT + + G
Sbjct: 848 TQLPALTTVRMVG 860
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 30/177 (16%)
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGL 400
G+ H++GL NL ++L T ++D ++ ++ L L LNL+ ITD+GLA L L L
Sbjct: 529 GINHIAGLNNLRVLDLGITRLNDQAMPTISQLP-LTVLNLERTLITDSGLARLAPLGATL 587
Query: 401 THLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
HLD+ +++T+ G A L F LR+L I G LTD G
Sbjct: 588 QHLDISDCSKLTERGLALLAAFPQLRTLAIAGLPLTDVG--------------------- 626
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
+S L SLN++ + I L ++ +L L+L + K+ ND++ LQ
Sbjct: 627 ------RLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQ 677
>gi|149174147|ref|ZP_01852775.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
gi|148847127|gb|EDL61462.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
Length = 476
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 10/221 (4%)
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T ESL + D+ L + + L LS ++V +G+ +L G T L S+NLS T
Sbjct: 257 TGFESLG--HSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTE 314
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
++D +L L GL L S+NL Q++ G+ L + + + G + A+
Sbjct: 315 VTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQL 374
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
K L S + G L G ++ L+L LTD+ L + G L +L +SN+
Sbjct: 375 K-LSSPAVTGELLKLFGTVRVQ-----AYLDL-DGIALTDEGLASLGGFEDLRTLRISNT 427
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
+I+SAGL HL L +LR L L V DI +LQ R LPN
Sbjct: 428 QISSAGLNHLAGLASLRELDLRGSAVADEDINKLQ-RALPN 467
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 46/224 (20%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
+ +TD ++ + + L +S SKVTD+GI YL+G + RL+ L
Sbjct: 265 SAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGAT-------------RLYSL--- 308
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKV-- 282
NL G VT A L+ L L L +NL Q+S G E + S+++
Sbjct: 309 ----------NLSGTEVTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAF 358
Query: 283 ---------------LNLGFNEITDECLVHLKGLTNLES-LNLDSCGIGDEGLVNLTGLC 326
L L +T E L+ L G +++ L+LD + DEGL +L G
Sbjct: 359 PGGWVWKLENAHGFQLKLSSPAVTGE-LLKLFGTVRVQAYLDLDGIALTDEGLASLGGFE 417
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
+L+ L +S+TQ+ S+GL HL+GL +L ++L + ++D + KL
Sbjct: 418 DLRTLRISNTQISSAGLNHLAGLASLRELDLRGSAVADEDINKL 461
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 6/196 (3%)
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
+ +L ++D F+ + L L +++TD + +L+G T L SLNL + D
Sbjct: 259 FESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDA 318
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
L +L GL L + L TQV G+ L + + +S+ ++F G G + KL +
Sbjct: 319 TLEHLKGLPELHSVNLRGTQVSPRGVLEL--IASSDSMQIAFPG---GWVWKLENAHGFQ 373
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L L + +T L ++ +LDL G +TD G A L F++LR+L I ++ A
Sbjct: 374 -LKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSA 432
Query: 438 GVKHIKDLSSLTLLNL 453
G+ H+ L+SL L+L
Sbjct: 433 GLNHLAGLASLRELDL 448
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 9/207 (4%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
++A+T Q ++ F + L L R G+ L+G +L SLN+ +TD+ ++
Sbjct: 264 HSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLS-GTEVTDATLEH 322
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L GL L S+ + ++V+ G+ L S S I + +L H F L
Sbjct: 323 LKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGF--------QL 374
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
L VT L + YL+L+ L+D+G L+ L + +I+ L
Sbjct: 375 KLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGL 434
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNL 322
HL GL +L L+L + DE + L
Sbjct: 435 NHLAGLASLRELDLRGSAVADEDINKL 461
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR- 114
+ L S++LSG++VTD+ L HLK L S++ Q+S G+ L S+ ++F
Sbjct: 302 ATRLYSLNLSGTEVTDATLEHLKGLPELHSVNLR-GTQVSPRGVLELIASSDSMQIAFPG 360
Query: 115 ----------------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ A+T + +K F + LDL+ GL +L G L
Sbjct: 361 GWVWKLENAHGFQLKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLR 420
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+L I I+ + + L+GL +L+ L + S V D I L+
Sbjct: 421 TLRIS-NTQISSAGLNHLAGLASLRELDLRGSAVADEDINKLQ 462
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%)
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
+FT I+ G + +L +TD L ++ L L +++TD+G Y
Sbjct: 239 AFTTIAAGDEISMVEFRDTGFESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEY 298
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
LR L SL + G +TDA ++H+K L L +NL LELI+
Sbjct: 299 LRGATRLYSLNLSGTEVTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIA 349
>gi|242071889|ref|XP_002451221.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
gi|241937064|gb|EES10209.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
Length = 569
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 215/449 (47%), Gaps = 60/449 (13%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERC 141
L SLD + C + D L + L+ RR +T G+ K G L +L ++ C
Sbjct: 78 LSSLDLSACAGLDDASLAAALPEAPAPLLAVRRCLGVTDVGLAKVAVGCPGLERLSVKWC 137
Query: 142 TRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIA 198
I V L K +L S++I + +T+ ++ LS L L+ + + C + D G+
Sbjct: 138 REISDIGVELLAKKCPQLRSVDISYLK-VTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQ 196
Query: 199 YLKGLSISSVIFILCSMIIRL-FCLHVFLTSL-QKLTLLNLEGCPVTAACLDSLSALGS- 255
L +C+ + + CL L+++ + LT+L L+G + A+ +L A+GS
Sbjct: 197 MLS----------MCNSLQEIETCLLSKLSTIGETLTVLRLDGLEIFAS---NLQAIGST 243
Query: 256 ---LFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNLGFNEI-TDECLVHL-KGLTNLESLN 308
L + L++C ++DDG + L+ +++ + T++ L + + +E L
Sbjct: 244 CKNLVEIGLSKCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQ 303
Query: 309 LDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L+SC I ++GL +T LC +LK ++L+D ++ + L+HL+ + L + L
Sbjct: 304 LESCPFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKL--------- 354
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSG-AAYLRNFKN 423
GL S I+D GL ++S G L LDL+ ITD G AA K
Sbjct: 355 -----GLCS---------SISDEGLVYISSNCGKLVELDLYRCSGITDDGLAAVASGCKK 400
Query: 424 LRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNS 481
+R L +C +TDAG+KH+ L LT L L +T + I+ G T L+ L++
Sbjct: 401 IRVLNLCYCTQITDAGLKHVSALEELTNLELRCLVRITGIGITSIAIGCTSLIELDLKRC 460
Query: 482 R-ITSAGLRHL-KPLKNLRSLTLESCKVT 508
+ AGL L + +NLR LT+ C+VT
Sbjct: 461 YSVDDAGLWALSRYSQNLRQLTISYCQVT 489
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 32/179 (17%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +++K ++ I + S L +DL+ + D+ L HL CS L L C ISD GL +
Sbjct: 308 PFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVY 367
Query: 102 LRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L L R + IT G+ A A G K+ L
Sbjct: 368 ISSNCGKLVELDLYRCSGITDDGLAAVA-----------------------SGCKKIRVL 404
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
N+ +C ITD+ +K +S L L +L++ C + + G+ I+S I I C+ +I L
Sbjct: 405 NLCYCTQITDAGLKHVSALEELTNLELRC-------LVRITGIGITS-IAIGCTSLIEL 455
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 178/401 (44%), Gaps = 52/401 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D ++++A + L SVD+S VT+ L L L+ + C+ I D GL+ L
Sbjct: 140 ISDIGVELLAKKCPQLRSVDISYLKVTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQMLS 199
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
++L + + + +++LD GL
Sbjct: 200 MCNSLQEI-----ETCLLSKLSTIGETLTVLRLD---------------GLE-------- 231
Query: 164 WCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLSIS-SVIFILCSMIIRLF 220
I S+++ + S NL + +S C+ +TD GI L I + C ++
Sbjct: 232 ----IFASNLQAIGSTCKNLVEIGLSKCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTND 287
Query: 221 CLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG 278
L + +K+ L LE CP ++ L+ ++ L S L ++L C+++D + +
Sbjct: 288 ALAAIAENCRKIECLQLESCPFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCS 347
Query: 279 SLKVLNLGF-NEITDECLVHLKG-LTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELS 334
L +L LG + I+DE LV++ L L+L C GI D+GL + C ++ L L
Sbjct: 348 ELLILKLGLCSSISDEGLVYISSNCGKLVELDLYRCSGITDDGLAAVASGCKKIRVLNLC 407
Query: 335 D-TQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLD-ARQITD 388
TQ+ +GL+H+S L L ++ L TGI S+ G +SL L+L + D
Sbjct: 408 YCTQITDAGLKHVSALEELTNLELRCLVRITGIGITSIA--IGCTSLIELDLKRCYSVDD 465
Query: 389 TGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
GL AL+ + L L + ++T G +L +LR L+
Sbjct: 466 AGLWALSRYSQNLRQLTISYCQVTGLGLCHL--LGSLRCLQ 504
>gi|290972775|ref|XP_002669126.1| predicted protein [Naegleria gruberi]
gi|284082669|gb|EFC36382.1| predicted protein [Naegleria gruberi]
Length = 467
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 196/406 (48%), Gaps = 25/406 (6%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES----- 159
L+ L S+ + NN I M++ A + L+ LD+ C R NL+G+ L S
Sbjct: 63 LTQLKSIVLKFNN-INEYEMESIASMNKLISLDI-GCAR-----TNLEGIKILSSKDNFT 115
Query: 160 -LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLS-ISSVIFILCS 214
LNI++ M+ +S +T+L+ L IS + ++ YLK L ++ +
Sbjct: 116 ELNIEFSFFDQVPYMEYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLD 175
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
M + +++L+ LT L++ G V + + ++ L L++ + ++G +
Sbjct: 176 MDLEFLK---SISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGAKLI 232
Query: 275 SK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S + L L +G N+I D+ + + L +L+L+ IG +GL + + LK L L
Sbjct: 233 SNSLKQLNTLRIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLML 292
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
+ +G S L ++ LTNL I+L T I ++ ++ ++ L+++N+ ++ D L
Sbjct: 293 NFNTIGGSRL-PINALTNLTEISLVLTNIGIEIVKSISLITKLRNVNISDNRLGDECLEI 351
Query: 394 L-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
+ SL LT LD+ +T++G YL + KNL L L D ++H+ L L L
Sbjct: 352 IGNSLFNLTELDISENNMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKSLY 411
Query: 453 LSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNL 497
++ N + D+ LI+ + L ++ N++ T G LK K+L
Sbjct: 412 INNN-QVGDEGFALIANSMKQLRLVHAHNNKETEIGRTLLKSRKHL 456
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 183/384 (47%), Gaps = 18/384 (4%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204
H LV+ L +L+S+ +K+ N I + +M+ ++ + L SL I C++ GI L
Sbjct: 56 HTKLVS--SLTQLKSIVLKFNN-INEYEMESIASMNKLISLDIGCARTNLEGIKILSSKD 112
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNL 261
+ + I S ++ + +++ + L L++ P++ A + L +L L L +
Sbjct: 113 NFTELNIEFSFFDQVPYME-YVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTV 171
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
+ + + S + L L++ N + E + + + L+ L++ IG+EG
Sbjct: 172 TYLDMDLEFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGAKL 231
Query: 322 LTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
++ L L L + D Q+G G +S + L +++L + I L + + LKSL
Sbjct: 232 ISNSLKQLNTLRIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLM 291
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
L+ I + L + +LT LT + L I + LR++ I L D ++
Sbjct: 292 LNFNTIGGSRLP-INALTNLTEISLVLTNIGIEIVKSISLITKLRNVNISDNRLGDECLE 350
Query: 441 HIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
I + L +LT L++S+N N+T+ + +S L L LN ++R+ ++HL LK L+S
Sbjct: 351 IIGNSLFNLTELDISEN-NMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKS 409
Query: 500 LTLESCKV-------TANDIKRLQ 516
L + + +V AN +K+L+
Sbjct: 410 LYINNNQVGDEGFALIANSMKQLR 433
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 98/415 (23%), Positives = 177/415 (42%), Gaps = 60/415 (14%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
++ +N+ M+ IAS + L+S+D+ + G+ L N L+ F +
Sbjct: 72 KFNNINEYEMESIASM-NKLISLDIGCARTNLEGIKILSSKDNFTELNIEFSFFDQVPYM 130
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E++ +++L L NN I+ K+ L K L KL
Sbjct: 131 EYVSKMTDLRKLDIS-NNPISLNRAKSANYL---------------------KSLEKLTD 168
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
L + + D D++ L ++NLK L S + ++G+ I +F L + I L
Sbjct: 169 LTVTYL----DMDLEFLKSISNLKFL---TSLSIYGNLVGIEGVKIICSMFQLKKLDITL 221
Query: 220 FCL-----HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
+ + SL++L L + + +S+S++ +L L+L + G E
Sbjct: 222 NAIGEEGAKLISNSLKQLNTLRIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGLEFI 281
Query: 275 SKIGSLKVLNLGFNEI-------------TD----------ECLVHLKGLTNLESLNLDS 311
++ LK L L FN I T+ E + + +T L ++N+
Sbjct: 282 CQMDQLKSLMLNFNTIGGSRLPINALTNLTEISLVLTNIGIEIVKSISLITKLRNVNISD 341
Query: 312 CGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
+GDE L + L NL L++S+ + +G ++LS L NL +N ++D S++ L
Sbjct: 342 NRLGDECLEIIGNSLFNLTELDISENNMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHL 401
Query: 371 AGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L LKSL ++ Q+ D G A + S+ L + + T+ G L++ K+L
Sbjct: 402 CSLKKLKSLYINNNQVGDEGFALIANSMKQLRLVHAHNNKETEIGRTLLKSRKHL 456
>gi|198432493|ref|XP_002130800.1| PREDICTED: similar to F-box and leucine-rich repeat protein 13
[Ciona intestinalis]
Length = 798
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 138/523 (26%), Positives = 229/523 (43%), Gaps = 123/523 (23%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFC 91
+QDL + GVND+ M IA +LL +++S +++TD L L C N+Q L +C
Sbjct: 321 VQDLNFSECKGVNDEVMRTIAESCPTLLYLNISHTEITDGTLRTLSRCCLNMQYLSLAYC 380
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
+ +D GL ++ +G LT + F ITAQG + A L ++V D+
Sbjct: 381 SKYTDRGLHYMASGKGCRKLTYIDFSGCLQITAQGFRHVAHGCTSLQSIVLNDMPSLTDS 440
Query: 139 ------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK- 191
E+CT NL+ + + S N +TD K L+ L+ L+I ++
Sbjct: 441 CIISLVEKCT-------NLRSVSLIGSPN------LTDMAFKALAQAKKLQKLRIESNQN 487
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
+TD+ L +C I H ++ Q+LT + L+ +LS
Sbjct: 488 ITDNTFKTLGK---------MCPYI-----GHFYVVDCQRLTDMMLK----------ALS 523
Query: 252 ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
L S+ LNL C ++SD G + +V + + +NL
Sbjct: 524 PLRSIIVLNLADCVRISDSGVRQ---------------------MVEGPSGSKIREMNLT 562
Query: 311 SC-GIGDEGLV-------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
+C + D L+ +LT LC C ++D +G+ L + L ++LS T I
Sbjct: 563 NCVRVSDVSLLRVAQRCHSLTHLCLCFCEHVTD-----AGIELLGSMPALLHVDLSGTNI 617
Query: 363 SDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
D L L S ++S+ + Q ITD GL F ++T+
Sbjct: 618 KDQGLASLGVNSRIRSVVMSECQGITDLGLQK------------FCQKVTE--------- 656
Query: 422 KNLRSLEICG-GGLTDAGVKHIKDLSS-LTLLNLSQNCNLTDKTLELISGLTGLVS-LNV 478
L +L++ L+DA +K++ LT LN++ LTD +++ +SG+ + LN+
Sbjct: 657 --LDTLDVSHCMSLSDAAIKNLAFCCRMLTSLNVAGCPLLTDLSIQYLSGVCHYIHFLNL 714
Query: 479 SNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTANDIKRLQSR 518
S I+ +++L K K LRSLT+ C+ +T +RL SR
Sbjct: 715 SGCIHISDRAVKYLRKGCKQLRSLTILYCRSITKITAQRLASR 757
>gi|357150706|ref|XP_003575549.1| PREDICTED: F-box/LRR-repeat protein 3-like [Brachypodium
distachyon]
Length = 666
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 234/501 (46%), Gaps = 50/501 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
A++ +CL + GV + +D + + L +VDLS D L + L+ L+
Sbjct: 110 AVRQVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAAAGLRELNLEK 169
Query: 91 CIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGL 148
C+ ++D GL + G L LSF+ I+ G+ L LD+ + L
Sbjct: 170 CLGVTDMGLAKVAVGCPKLEKLSFKWCREISDIGVDLLVKKCRELRNLDISYLEVSNESL 229
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIA-------Y 199
++ L KLE L++ C CI D ++ LS G +L+S+ +S C VT G+A +
Sbjct: 230 RSISTLEKLEELSMVGCLCIDDKGLELLSRGSNSLQSVDVSRCDHVTSEGLASLIDGHSF 289
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS-ALGSLFY 258
L+ L+ + + I + F L T + LT+L L+G V+++ L +++ +L
Sbjct: 290 LQKLNAADSLH----EIGQNF-LSKLATLKETLTMLRLDGFEVSSSLLLAIAEGCNNLVE 344
Query: 259 LNLNRCQ-LSDDGCEKF-SKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIG 315
+ L++C ++D+G ++ G L+ ++L N +TD LV + D+C +
Sbjct: 345 VGLSKCNGVTDEGISSLVARCGYLRKIDLTCCNLLTDNALVSIA----------DNCKML 394
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
+ L+ + K LE R + NL I+L+ G++D +L+ LA S
Sbjct: 395 ECLLLESCSSLSEKGLE-----------RIATCCPNLSEIDLTDCGVNDAALQHLAKCSE 443
Query: 376 LKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICG 431
L L L I+D GL ++S LT +DL+ ITD G A L + K ++ L +C
Sbjct: 444 LLILKLGLCSSISDKGLGFISSKCVKLTEVDLYRCNSITDDGLATLAKGCKKIKMLNLCY 503
Query: 432 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGL 488
+TD G+ H+ L LT L L +T + ++ G LV +++ + +GL
Sbjct: 504 CNKITDGGLSHLGSLEELTNLELRCLVRITGIGISSVAIGCKSLVEIDLKRCYSVDDSGL 563
Query: 489 RHLKPLK-NLRSLTLESCKVT 508
L NLR LT+ C+VT
Sbjct: 564 WALARYALNLRQLTISYCQVT 584
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 101/416 (24%), Positives = 182/416 (43%), Gaps = 46/416 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
++D +D++ + L ++D+S +V++ L + L+ L C+ I D GLE L
Sbjct: 199 ISDIGVDLLVKKCRELRNLDISYLEVSNESLRSISTLEKLEELSMVGCLCIDDKGLELLS 258
Query: 103 RGLSNLTSLSFRRNNAITAQGM------KAFAGLINLVKLDLERCTRIHGGLVNLK---G 153
RG ++L S+ R + +T++G+ +F +N E L LK
Sbjct: 259 RGSNSLQSVDVSRCDHVTSEGLASLIDGHSFLQKLNAADSLHEIGQNFLSKLATLKETLT 318
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA-------YLKGLSI 205
+++L+ + + + G NL + +S C+ VTD GI+ YL+ + +
Sbjct: 319 MLRLDGFEVS-----SSLLLAIAEGCNNLVEVGLSKCNGVTDEGISSLVARCGYLRKIDL 373
Query: 206 SSVIFILCSMIIRLF--CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
+ + + ++ + C + L+ + L+ +G A C +LS ++L
Sbjct: 374 TCCNLLTDNALVSIADNCKMLECLLLESCSSLSEKGLERIATCCPNLSE------IDLTD 427
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKG-LTNLESLNLDSC-GIGDEGLV 320
C ++D + +K L +L LG + I+D+ L + L ++L C I D+GL
Sbjct: 428 CGVNDAALQHLAKCSELLILKLGLCSSISDKGLGFISSKCVKLTEVDLYRCNSITDDGLA 487
Query: 321 NLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLS 374
L C +K L L ++ GL HL L L ++ L TGI S+ G
Sbjct: 488 TLAKGCKKIKMLNLCYCNKITDGGLSHLGSLEELTNLELRCLVRITGIGISSVA--IGCK 545
Query: 375 SLKSLNLD-ARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
SL ++L + D+GL AL L L + ++T G +L +LR L+
Sbjct: 546 SLVEIDLKRCYSVDDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLRCLQ 599
>gi|270010132|gb|EFA06580.1| hypothetical protein TcasGA2_TC009492 [Tribolium castaneum]
Length = 474
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 151/263 (57%), Gaps = 15/263 (5%)
Query: 255 SLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLD 310
+L L+L+ C Q++D + ++ + +L+VL LG + +T+ L+ + GL L+ LNL
Sbjct: 206 TLTELDLSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLR 265
Query: 311 SCG-IGDEGLVNL-TGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGS 366
SC +GD+G+ +L +G +L+ L L D Q + L+H +GLT+L SINLSF I+D
Sbjct: 266 SCWHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSG 325
Query: 367 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 422
L+ LA +++L+ LNL + I+DTG+A L + ++ LD+ F +I D ++ +
Sbjct: 326 LKHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLF 385
Query: 423 NLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 480
NLR+L + L+D G+ I + L L LN+ Q +TDK L I+ L L +++
Sbjct: 386 NLRNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYG 445
Query: 481 -SRITSAGLRHLKPLKNLRSLTL 502
+RIT+ GL + L L L L
Sbjct: 446 CTRITTVGLERIMKLPQLSVLNL 468
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 163/351 (46%), Gaps = 62/351 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-----KL 157
RG+ + LS R++ QG+ NL L+L C + G V + L
Sbjct: 156 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNV--GDVGISHAFVADSPTL 207
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG---IAY----LKGLSISSV 208
L++ C +TD+ + ++ L NL+ L++ CS VT+SG IA+ LK L++ S
Sbjct: 208 TELDLSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRS- 266
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LS 267
C HV +Q L G P SL +L L CQ LS
Sbjct: 267 ------------CWHVGDQGIQHLA----SGNP-------------SLEHLGLQDCQKLS 297
Query: 268 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-G 324
D+ + + + SL +NL F ITD L HL +TNL LNL SC I D G+ L G
Sbjct: 298 DEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAFLAEG 357
Query: 325 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL 381
+ L++S ++G L H+S GL NL ++ +S +SD L K+A L L++LN+
Sbjct: 358 GSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLETLNI 417
Query: 382 -DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
++TD GL + SL L +DL+G RIT G + L L +
Sbjct: 418 GQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 468
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 5/159 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 270 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 329
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 330 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 389
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI 197
L + C + K + L +L++L I CS+VTD G+
Sbjct: 390 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGL 428
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 346 LSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 397
+ G+ NLES+NL GIS + A +L L+L +Q+TDT L + L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFV---ADSPTLTELDLSLCKQVTDTSLTRIAQHL 230
Query: 398 TGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICGGGLTDAGVKHIKD-LSSLT 449
L L+L G + +T+SG A L+ K NLRS G D G++H+ SL
Sbjct: 231 KNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG----DQGIQHLASGNPSLE 286
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
L L L+D+ L+ +GLT L+S+N+S IT +GL+HL + NLR L L SC
Sbjct: 287 HLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSC 343
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 24/237 (10%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 348
++G+ NLESLNL C +GD G+ + LT L C +++DT + R
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLT----RIAQH 229
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLD 404
L NLE + L + +++ L +A GL LK LNL + + D G+ L S L HL
Sbjct: 230 LKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLG 289
Query: 405 LFG-ARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L +++D + +L S L C +TD+G+KH+ +++L LNL N++D
Sbjct: 290 LQDCQKLSDEALKHATGLTSLISINLSFCVS-ITDSGLKHLAKMTNLRELNLRSCDNISD 348
Query: 462 KTLELIS-GLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 515
+ ++ G + + SL+VS +I L H+ + L NLR+L + +C+++ + ++
Sbjct: 349 TGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 405
>gi|290997880|ref|XP_002681509.1| predicted protein [Naegleria gruberi]
gi|284095133|gb|EFC48765.1| predicted protein [Naegleria gruberi]
Length = 226
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 5/215 (2%)
Query: 242 VTAACLDS-----LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
V+ LDS +S + L L + ++ D+G + S++ L L + N+I + +
Sbjct: 9 VSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVK 68
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
+L L L +L+++ IGDEG ++ + L L + D Q+G G++++S + L +
Sbjct: 69 YLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLY 128
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
+ GI D + ++G+ L L++ +I D G ++ + LT L +F RI D GA
Sbjct: 129 IYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYNRIGDEGAK 188
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
Y+ K L L+I + D G K I + L L
Sbjct: 189 YISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 92/182 (50%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
++ +++L L + + A + L L L L++NR ++ D+G + SK+ L +L+
Sbjct: 45 LISEMKQLISLGISKNQIGAKGVKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLH 104
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G N+I + + ++ + L L + GIGDEG ++G+ L L + ++G G +
Sbjct: 105 VGDNQIGVKGVKYISEMKQLTCLYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAK 164
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + L +++ + I D + ++ + L L++ +I D G ++ + L L
Sbjct: 165 FISEMKQLTELSIFYNRIGDEGAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRLC 224
Query: 405 LF 406
L+
Sbjct: 225 LY 226
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++ + L L + ++G G + +S + L S+ +S I ++ L L L +L++
Sbjct: 22 ISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKGVKYLCKLKQLIALDI 81
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+ +I D G ++ + LT L + +I G Y+ K L L I G G+ D G K
Sbjct: 82 NRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIYGNGIGDEGAKL 141
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
I + LT L++ N + D+ + IS + L L++ +RI G +++ +K L L
Sbjct: 142 ISGMKQLTELSIGHN-EIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYISEMKQLTDLD 200
Query: 502 LESCKV 507
+ ++
Sbjct: 201 IRHNRI 206
>gi|41393121|ref|NP_958890.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|37681873|gb|AAQ97814.1| hypothetical protein MGC40195 [Danio rerio]
gi|66911816|gb|AAH96775.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|157423043|gb|AAI53540.1| Fbxl14a protein [Danio rerio]
gi|182891432|gb|AAI64514.1| Fbxl14a protein [Danio rerio]
Length = 411
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 185/364 (50%), Gaps = 44/364 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L NL+ L + CS +T++G+ L I+ + L S+ +
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGL-----LLIAWGLHNLKSLNL 176
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 274
R C HV + + +L G +AA CL +L +L L CQ L+D +
Sbjct: 177 R-SCRHV-----SDVGIGHLAGMTRSAAEGCL-------TLEHLTLQDCQKLTDLSLKHI 223
Query: 275 SK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKC 330
SK + LKVLNL F I+D ++HL +T L +LNL SC I D G+++L+ G L
Sbjct: 224 SKGLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYG 283
Query: 331 LELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQI 386
L++S +VG L +++ GL L+S++L ISD + R + + LK+LN+ +I
Sbjct: 284 LDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRI 343
Query: 387 TDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
TD GL + LT LT +DL+G +IT G + L+ L + +T+ VK + D
Sbjct: 344 TDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE--VKGLGD 401
Query: 445 LSSL 448
S +
Sbjct: 402 ASEI 405
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 155/277 (55%), Gaps = 23/277 (8%)
Query: 255 SLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLD 310
SL LNL+ C Q++D + ++ + +L++L+LG + IT+ L+ + GL NL+SLNL
Sbjct: 118 SLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLR 177
Query: 311 SC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF 359
SC + D G+ +L G+ L+ L L D Q + L+H+S GL L+ +NLSF
Sbjct: 178 SCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSF 237
Query: 360 TG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGARITDSGA 415
G ISD + L+ ++ L +LNL + I+DTG+ L+ L LD+ F ++ D
Sbjct: 238 CGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSL 297
Query: 416 AYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTG 472
AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT
Sbjct: 298 AYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQ 357
Query: 473 LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 508
L +++ ++IT GL + L L+ L L ++T
Sbjct: 358 LTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMT 394
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 17/266 (6%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSN--------LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
L G++ L L+ + +T +K + GL L L+L C I G+++L
Sbjct: 190 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHL 249
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVI 209
+ +L +LN++ C+ I+D+ + LS G L L +S C KV D +AY+
Sbjct: 250 SHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKS 309
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QL 266
LCS I ++ + + +L LN+ C +T L+ ++ L L ++L C ++
Sbjct: 310 LSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKI 369
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITD 292
+ G E+ +++ LKVLNLG ++T+
Sbjct: 370 TKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 153/303 (50%), Gaps = 28/303 (9%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L + + L NL L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGC 153
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL NL L+L C + G+ +L G+ + LE L ++ C
Sbjct: 154 SNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQ 213
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLH 223
+TD +K +S GL LK L +S C ++D+G+ +L ++ + ++ C I +H
Sbjct: 214 KLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMH 273
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKF-SKIG 278
+ + +L +L L++ C SL+ + Y L+L C +SDDG + ++
Sbjct: 274 LSMGAL-RLYGLDVSFCDKVGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMH 330
Query: 279 SLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 335
LK LN+G ITD+ L + LT L ++L C I GL +T L LK L L
Sbjct: 331 ELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGL 390
Query: 336 TQV 338
Q+
Sbjct: 391 WQM 393
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + ++ L L C +++D+ +G R
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLG----RIAQY 141
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE ++L + I++ L +A GL +LKSLNL + R ++D G+ L +T
Sbjct: 142 LKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 201
Query: 399 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L HL L ++TD ++ N + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 202 LTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGG-ISDAGMIHLSHMTQLWTLNL 260
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ +
Sbjct: 261 RSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDD 320
Query: 511 DIKRL 515
I R+
Sbjct: 321 GINRM 325
>gi|281210637|gb|EFA84803.1| hypothetical protein PPL_01796 [Polysphondylium pallidum PN500]
Length = 739
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 168/347 (48%), Gaps = 12/347 (3%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
+LQ + C +D G+E+ + + +LTSL + A+T +K+ ++ L +L L
Sbjct: 365 HLQKVSLVACFGFTDLGMENFKRMEHLTSLILT-DCAVTNVSVKSLKQMVKLEELSLRNT 423
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL L L++L+ L++ CN + + T L++L +S + VT+ I L
Sbjct: 424 KITDSGLTLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVTEKAIQKLT 483
Query: 202 GLSISSVIFILCSMI--IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
L + S+ C MI LF + +F +L+ LL++ G + A +L L +L L
Sbjct: 484 KLPLVSLYLSNCPMIGNQSLFFITLFGKTLK---LLDIFGTKIGGAGFVNLQRLPNLTVL 540
Query: 260 NLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L R LSD + + +++ L+L + I + L L L L+L + I D+
Sbjct: 541 KLPGRDSLSDAHISHLNALQNVRRLDLS-DYINITTIAPLNPLRYLCELSLSNTKISDDS 599
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ ++ G NL L L T+V G+ L L+ L +++L TGI L L+ L +L S
Sbjct: 600 IDSIIGCSNLVILNLDRTRVRDIGVSKLISLS-LHTLSLMATGIRGDCLTTLSQLITLTS 658
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
LN+ + I D + L L LT++DL R T + A L+ N++
Sbjct: 659 LNISSNDIQDAKVLPLLDLPNLTYIDL---RNTQAFTASLKFNHNVQ 702
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 170/358 (47%), Gaps = 38/358 (10%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ HL+ +S + F T GM+ F + +L L L C + + +LK ++KLE
Sbjct: 363 MYHLQKVSLVACFGF------TDLGMENFKRMEHLTSLILTDCAVTNVSVKSLKQMVKLE 416
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
L+++ ITDS + LS L LK L +S +TD GI + I C +
Sbjct: 417 ELSLRNTK-ITDSGLTLLSSLVELKFLDLSACNITDEGITFA----------IPC--FTK 463
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSK 276
L L++ TS+ + + L P+ + L + +G SLF++ L F K
Sbjct: 464 LETLNLSATSVTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITL------------FGK 511
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSD 335
+LK+L++ +I V+L+ L NL L L + D + +L L N++ L+LSD
Sbjct: 512 --TLKLLDIFGTKIGGAGFVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLSD 569
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+ + + L+ L L ++LS T ISD S+ + G S+L LNLD ++ D G++ L
Sbjct: 570 Y-INITTIAPLNPLRYLCELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLI 628
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
SL+ L L L I L L SL I + DA V + DL +LT ++L
Sbjct: 629 SLS-LHTLSLMATGIRGDCLTTLSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDL 685
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 37/262 (14%)
Query: 278 GSLKVLNLGF------NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 330
++ LNL + N+ CL + +L+ ++L +C G D G+ N + +L
Sbjct: 337 AKIEELNLNYQHLIVSNDFLQNCL---SRMYHLQKVSLVACFGFTDLGMENFKRMEHLTS 393
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L+D V + ++ L + LE ++L T I+D L L+ L LK L+L A ITD G
Sbjct: 394 LILTDCAVTNVSVKSLKQMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSACNITDEG 453
Query: 391 LA-ALTSLTGLTHLDLFGARITDSG----------AAYLRN---------F------KNL 424
+ A+ T L L+L +T+ + YL N F K L
Sbjct: 454 ITFAIPCFTKLETLNLSATSVTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTL 513
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
+ L+I G + AG +++ L +LT+L L +L+D + ++ L + L++S+ I
Sbjct: 514 KLLDIFGTKIGGAGFVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLSD-YIN 572
Query: 485 SAGLRHLKPLKNLRSLTLESCK 506
+ L PL+ L L+L + K
Sbjct: 573 ITTIAPLNPLRYLCELSLSNTK 594
>gi|414076287|ref|YP_006995605.1| hypothetical protein ANA_C11003 [Anabaena sp. 90]
gi|413969703|gb|AFW93792.1| leucine-rich repeat-containing protein [Anabaena sp. 90]
Length = 474
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 195/382 (51%), Gaps = 61/382 (15%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD----SGIAYLK--GLSISSVIFILC-SMIIRLFCLH 223
SD+KPLS LT L SL +S +K++D S + L GLS + + I S + +L L
Sbjct: 98 SDIKPLSNLTKLTSLGLSKNKISDIKSLSNLTKLTSLGLSKNKISDIKSLSNLTKLTKLD 157
Query: 224 VF---------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
+ L++L KLT L+L G ++ + LS L +L +LNL ++SD +
Sbjct: 158 LVGNQISDTTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLNLVGNKISD--IKPL 213
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S + L L L N+I+D + L TNL L+L I D L+ L L L+L
Sbjct: 214 SNLTKLTSLGLSKNKISD--IKSLSNFTNLTKLDLVGNQISDT--TPLSNLTKLTSLDLW 269
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
Q+ S ++ LS LTNL + L IS+ ++ L+ L++L SL L QI+D + L
Sbjct: 270 GNQI--SDIKPLSNLTNLTFLILWGNQISN--IKPLSNLTNLTSLTLSLNQISD--IKPL 323
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------------------ 436
++LT LT+LDL+G +I+D L N NL L + ++D
Sbjct: 324 SNLTNLTYLDLWGNKISD--IKPLSNLTNLTYLYLLSNKISDIKPLSNLTNLTLLFLSLN 381
Query: 437 --AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
+ +K + L++LT L LS+N ++D ++ +S LT L SL +S ++I+ +KPL
Sbjct: 382 QISDIKPLSSLTNLTFLILSKN-QISD--IKPLSNLTNLTSLGLSENKIS-----DIKPL 433
Query: 495 KNLRSLT-LESCKVTANDIKRL 515
NL +LT L + +DIK L
Sbjct: 434 SNLTNLTYLSLWENPISDIKPL 455
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 211/446 (47%), Gaps = 82/446 (18%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTS 110
SQ + +L+ +L+ ++++ + +K SNL L + +S + ++ LSN LTS
Sbjct: 78 SQANQILT-NLTSLGLSENKISDIKPLSNLTKLT---SLGLSKNKISDIKSLSNLTKLTS 133
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L +N +K+ + L L KLDL L L KL SL++ W N I
Sbjct: 134 LGLSKNK---ISDIKSLSNLTKLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI-- 185
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
SD+KPLS LTNL L + +K++D +K LS +L
Sbjct: 186 SDIKPLSNLTNLTFLNLVGNKISD-----IKPLS-----------------------NLT 217
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
KLT L L ++ + SLS +L L+L Q+SD S + L L+L N+I
Sbjct: 218 KLTSLGLSKNKISD--IKSLSNFTNLTKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQI 273
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
+D + L LTNL L L G + L+ L NL L LS Q+ S ++ LS LT
Sbjct: 274 SD--IKPLSNLTNLTFLIL--WGNQISNIKPLSNLTNLTSLTLSLNQI--SDIKPLSNLT 327
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------------------TG 390
NL ++L ISD ++ L+ L++L L L + +I+D +
Sbjct: 328 NLTYLDLWGNKISD--IKPLSNLTNLTYLYLLSNKISDIKPLSNLTNLTLLFLSLNQISD 385
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
+ L+SLT LT L L +I+D L N NL SL + ++D +K + +L++LT
Sbjct: 386 IKPLSSLTNLTFLILSKNQISD--IKPLSNLTNLTSLGLSENKISD--IKPLSNLTNLTY 441
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSL 476
L+L +N ++D ++ +S LT L L
Sbjct: 442 LSLWENP-ISD--IKPLSNLTNLTEL 464
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 177/358 (49%), Gaps = 61/358 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFR 114
+ L S+DL G+ ++D +K SNL +L F + +ISD ++ L L+ LTSL
Sbjct: 173 TKLTSLDLWGNQISD-----IKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLS 225
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N +K+ + NL KLDL L L KL SL++ W N I SD+K
Sbjct: 226 KNK---ISDIKSLSNFTNLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI--SDIK 277
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
PLS LTNL L + +++++ +K LS LT+L LTL
Sbjct: 278 PLSNLTNLTFLILWGNQISN-----IKPLS--------------------NLTNLTSLTL 312
Query: 235 -LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LN + + LS L +L YL+L ++SD + S + +L L L N+I+D
Sbjct: 313 SLN------QISDIKPLSNLTNLTYLDLWGNKISD--IKPLSNLTNLTYLYLLSNKISD- 363
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ L LTNL L L I D + L+ L NL L LS Q+ S ++ LS LTNL
Sbjct: 364 -IKPLSNLTNLTLLFLSLNQISD--IKPLSSLTNLTFLILSKNQI--SDIKPLSNLTNLT 418
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
S+ LS ISD ++ L+ L++L L+L I+D + L++LT LT L L+ T
Sbjct: 419 SLGLSENKISD--IKPLSNLTNLTYLSLWENPISD--IKPLSNLTNLTELYLWENPFT 472
>gi|320169763|gb|EFW46662.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 684
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 107/414 (25%), Positives = 176/414 (42%), Gaps = 33/414 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ L SL F NN IT+ + AF+GL L +L L
Sbjct: 53 FSGLTALNSL-FLSNNPITSIAVNAFSGLTALTQLSLAG--------------------- 90
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
N +T +GLT L L + +++ + GL + V+ + + I +
Sbjct: 91 ----NPLTTIPDNTFTGLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNI-A 145
Query: 222 LHVF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
+ F LT+L +L+L N + A+ LSAL YL+L Q++ F +
Sbjct: 146 SNTFTGLTALTRLSLFNNNITSIPASAFADLSALT---YLDLAGNQMTSLSANAFIGLTE 202
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L L+L NEIT GLT L L L++ I + GL +L L + + Q+
Sbjct: 203 LTYLSLTSNEITSISPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQIT 262
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
S +GL +L ++L ++ AGL+SL L++ QIT L
Sbjct: 263 SLSANGFAGLPSLTELDLDLNLMTSIDASAFAGLTSLNLLSVQNNQITSISANGFAGLPS 322
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
LT L L +IT A +L L + G +T ++SL++L+L N +
Sbjct: 323 LTALGLESNQITSISANAFAGLTSLNFLRLEGNQITSISANAFAAVTSLSVLSLHFN-QI 381
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
T + +GLT ++ L ++++ T+ + L+N L+LE ++ N+
Sbjct: 382 TSFSANAFTGLTTMMYLLLNSNPFTTLPPGLFQGLQNGLILSLEDSSLSPNNFT 435
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 104/238 (43%), Gaps = 4/238 (1%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L L N T GLT L SL L + I + +GL L L L+ + +
Sbjct: 38 LRLHLNLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIP 97
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+GLT L +++ T I+ S AGL L+ L+L+ QIT+ T LT LT
Sbjct: 98 DNTFTGLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTR 157
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L LF IT A+ + L L++ G +T L+ LT L+L+ N +T
Sbjct: 158 LSLFNNNITSIPASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSN-EITSI 216
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 517
+ +GLT L L + N+ I S L +L L + + ++T AN L S
Sbjct: 217 SPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPS 274
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 111/278 (39%), Gaps = 75/278 (26%)
Query: 57 SSLLSVDLSGSDVTD---SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL----- 108
S+L +DL+G+ +T + I L + + L SL N IS L L+ L
Sbjct: 177 SALTYLDLAGNQMTSLSANAFIGLTELTYL-SLTSNEITSISPAAFTGLTALTELVLENN 235
Query: 109 -------------TSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
TSL+ RNN IT+ FAGL +L +LDL+
Sbjct: 236 LIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLD-------------- 281
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
N +T D +GLT+L L + +++T SIS+ F
Sbjct: 282 -----------LNLMTSIDASAFAGLTSLNLLSVQNNQIT----------SISANGF--- 317
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
L LT L LE +T+ ++ + L SL +L L Q++
Sbjct: 318 -------------AGLPSLTALGLESNQITSISANAFAGLTSLNFLRLEGNQITSISANA 364
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
F+ + SL VL+L FN+IT GLT + L L+S
Sbjct: 365 FAAVTSLSVLSLHFNQITSFSANAFTGLTTMMYLLLNS 402
>gi|343414369|emb|CCD21014.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 469
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 139/424 (32%), Positives = 210/424 (49%), Gaps = 48/424 (11%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD + C IS+ + L + L L +T + + +I L KL L CT I
Sbjct: 2 LDLSHCTDISN--VSRLSKIIALQKLDLSHCTGVT--DVSPLSKMIGLEKLYLSHCTGI- 56
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGL 203
+ L L L +L+I C ITD + PLS L N L +S C+ +TD S ++ L L
Sbjct: 57 TDVPPLSKLSSLRTLDISHCTGITD--VSPLSKLNNFVQLDLSHCTGITDVSPLSVLSSL 114
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
+ + F C+ I + L V L+SL+ L L G + LS L SL L+L+
Sbjct: 115 RM--LFFSHCTGITDVSPLSV-LSSLRTLDLSYCTG----IKHVSPLSKLSSLEKLDLSH 167
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 321
C + SK+ SL L+L + I E L L++L +L+L C GI D +
Sbjct: 168 CT-AIKHVSPLSKLSSLCTLDLSYCTGIKHE--SPLSKLSSLRTLDLSHCTGITD--VSP 222
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 380
L+ L +L+ L+LS G + + LS L++L +++LS TGI+D S L+ LSSL++L+
Sbjct: 223 LSELSSLRTLDLSHCT-GITDVSPLSELSSLRTLDLSHCTGITDVS--PLSKLSSLRTLD 279
Query: 381 LD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDA 437
L ITD ++ L+ L+ L LDL ITD + L +LR L + G+TD
Sbjct: 280 LSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRMLYLSHCTGITD- 334
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
V + +LSSL +L+LS +TD +S L+ L SL++ GL H + ++
Sbjct: 335 -VSPLSELSSLRMLDLSHCTGITD-----VSPLSELSSLHI-------LGLSHCTGITDV 381
Query: 498 RSLT 501
LT
Sbjct: 382 SPLT 385
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L + S+L++LD +
Sbjct: 251 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 305
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L L IT + + L +L LDL CT G+ +
Sbjct: 306 CTGITD--VSPLSELSSLRMLYLSHCTGIT--DVSPLSELSSLRMLDLSHCT----GITD 357
Query: 151 LKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
+ L +L SL+I +C +D+ PL+ + + L +S C+ +TD
Sbjct: 358 VSPLSELSSLHILGLSHCTGITDVSPLTTIIGFEKLYLSNCTGITD 403
>gi|91085811|ref|XP_974701.1| PREDICTED: similar to partner of paired CG9952-PA [Tribolium
castaneum]
Length = 439
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 151/263 (57%), Gaps = 15/263 (5%)
Query: 255 SLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLD 310
+L L+L+ C Q++D + ++ + +L+VL LG + +T+ L+ + GL L+ LNL
Sbjct: 171 TLTELDLSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLR 230
Query: 311 SCG-IGDEGLVNL-TGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGS 366
SC +GD+G+ +L +G +L+ L L D Q + L+H +GLT+L SINLSF I+D
Sbjct: 231 SCWHVGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSG 290
Query: 367 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFK 422
L+ LA +++L+ LNL + I+DTG+A L + ++ LD+ F +I D ++ +
Sbjct: 291 LKHLAKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLF 350
Query: 423 NLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN 480
NLR+L + L+D G+ I + L L LN+ Q +TDK L I+ L L +++
Sbjct: 351 NLRNLLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYG 410
Query: 481 -SRITSAGLRHLKPLKNLRSLTL 502
+RIT+ GL + L L L L
Sbjct: 411 CTRITTVGLERIMKLPQLSVLNL 433
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 163/351 (46%), Gaps = 62/351 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-----KL 157
RG+ + LS R++ QG+ NL L+L C + G V + L
Sbjct: 121 RGIKRVQVLSLRKSLRDVIQGIP------NLESLNLRGCYNV--GDVGISHAFVADSPTL 172
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG---IAY----LKGLSISSV 208
L++ C +TD+ + ++ L NL+ L++ CS VT+SG IA+ LK L++ S
Sbjct: 173 TELDLSLCKQVTDTSLTRIAQHLKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRS- 231
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LS 267
C HV +Q L G P SL +L L CQ LS
Sbjct: 232 ------------CWHVGDQGIQHLA----SGNP-------------SLEHLGLQDCQKLS 262
Query: 268 DDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-G 324
D+ + + + SL +NL F ITD L HL +TNL LNL SC I D G+ L G
Sbjct: 263 DEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAFLAEG 322
Query: 325 LCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL 381
+ L++S ++G L H+S GL NL ++ +S +SD L K+A L L++LN+
Sbjct: 323 GSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLETLNI 382
Query: 382 -DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
++TD GL + SL L +DL+G RIT G + L L +
Sbjct: 383 GQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 433
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 5/159 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 235 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 294
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 295 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 354
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI 197
L + C + K + L +L++L I CS+VTD G+
Sbjct: 355 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGL 393
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 346 LSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 397
+ G+ NLES+NL GIS + A +L L+L +Q+TDT L + L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFV---ADSPTLTELDLSLCKQVTDTSLTRIAQHL 195
Query: 398 TGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICGGGLTDAGVKHIKD-LSSLT 449
L L+L G + +T+SG A L+ K NLRS G D G++H+ SL
Sbjct: 196 KNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG----DQGIQHLASGNPSLE 251
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
L L L+D+ L+ +GLT L+S+N+S IT +GL+HL + NLR L L SC
Sbjct: 252 HLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSC 308
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 24/237 (10%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 348
++G+ NLESLNL C +GD G+ + LT L C +++DT + R
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLT----RIAQH 194
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLD 404
L NLE + L + +++ L +A GL LK LNL + + D G+ L S L HL
Sbjct: 195 LKNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLG 254
Query: 405 LFG-ARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L +++D + +L S L C +TD+G+KH+ +++L LNL N++D
Sbjct: 255 LQDCQKLSDEALKHATGLTSLISINLSFCVS-ITDSGLKHLAKMTNLRELNLRSCDNISD 313
Query: 462 KTLELIS-GLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 515
+ ++ G + + SL+VS +I L H+ + L NLR+L + +C+++ + ++
Sbjct: 314 TGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 370
>gi|84043398|ref|XP_951489.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348218|gb|AAQ15545.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359994|gb|AAX80418.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1110
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 135/492 (27%), Positives = 219/492 (44%), Gaps = 62/492 (12%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGLSNL 108
SG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+ +
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGIGVV 362
Query: 109 TSLSFRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+L R + ++ + + +LV+L LE C + G + L L+ LE LN+
Sbjct: 363 WALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENC-KGFGDVKPLSNLVTLEELNLH 421
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL--CSMIIRLFC 221
+C+ +T S M L L L+ L + ++V ++ + + SI V L C I +
Sbjct: 422 YCDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISA 480
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+ LT+L++L + N C VT+ + L L L+ +++D+ S+ SL
Sbjct: 481 I-ASLTALEELNIDN--SCNVTSG-WNVFGTLHQLRVATLSNTRINDENIRHVSECKSLN 536
Query: 282 VLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
LNL F +ITD + L +T LE LNLD C +G+ L L + L + + +G
Sbjct: 537 TLNLAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGKLPKARILSMKECYMGD 594
Query: 341 SGLRHLSGLTNLESINLSFTGISDG--SLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
+ S L N +S+ S G S++ L+ +++L+ L LD + + + S +
Sbjct: 595 GYAQQCSILGNSKSLVKLNLERSMGFISVKALSNIATLEELVLDHAE----EVCCIPSFS 650
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L L + + TD G +T K+I + SL LNLS
Sbjct: 651 CLPRLRVLNLKYTD-----------------INGDVT----KNISESKSLRSLNLSHCKW 689
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS- 517
+TD + ++S L+ L LNV+ G L L LR L + A DI L S
Sbjct: 690 VTD--ISVLSSLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTNIAAKDIACLSSC 747
Query: 518 RDLPNLVSFRPE 529
+ L L FR E
Sbjct: 748 KTLVKLKFFRCE 759
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 199/442 (45%), Gaps = 62/442 (14%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+ L L L FR NN I + ++ L +L + + L N++G+ +L +L
Sbjct: 173 LKRLHMLKRLCFRSNN-IDNNDARHLFNIVTLEELAITDTMQ----LTNIRGISRLTNLK 227
Query: 162 IKWCNC--ITDSDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLSISSVIFILCS 214
N I DS + +S L L +S C+ +TD S +A L+ L+++S
Sbjct: 228 CLELNSTDIDDSCIGEISACAKLSKLSVSECNNITDATPISQLAALEELNLNS------- 280
Query: 215 MIIRLFCLHVF-----LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD 268
C H+ L L +L +L+L G PV CL L GSL LN++ C QL+D
Sbjct: 281 ------CYHITKGIETLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTD 334
Query: 269 ---------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLES 306
+GC + ++ + L+VL++ +++ L + +L
Sbjct: 335 INPLSNATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGSLVR 394
Query: 307 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L+L++C G GD + L+ L L+ L L +SG+ L L L ++L T + +
Sbjct: 395 LSLENCKGFGD--VKPLSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNN 452
Query: 366 SLRKLAGLS-SLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
SL + S L SLNL ++IT ++A+ SLT L L++ + SG
Sbjct: 453 SLENICTSSIPLVSLNLSHCKKIT--SISAIASLTALEELNIDNSCNVTSGWNVFGTLHQ 510
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
LR + + D ++H+ + SL LNL+ ++TD T +S +T L LN+
Sbjct: 511 LRVATLSNTRINDENIRHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCPN 568
Query: 484 TSAGLRHLKPLKNLRSLTLESC 505
G+ L L R L+++ C
Sbjct: 569 IRKGIETLGKLPKARILSMKEC 590
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 119/445 (26%), Positives = 193/445 (43%), Gaps = 39/445 (8%)
Query: 98 GLEHLRGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLM 155
G ++ LSN+ +L ++A + +F+ L L L+L + T I+G + N+
Sbjct: 619 GFISVKALSNIATLEELVLDHAEEVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESK 677
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL--- 212
L SLN+ C +TD + LS L+ L+ L ++C G L L + V +
Sbjct: 678 SLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNGIRKGWESLGKLPLLRVAILSDTN 735
Query: 213 -----------CSMIIRLFCLH-------VFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
C +++L + +Q L L + C L+ L L
Sbjct: 736 IAAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYKIQSLEELIVRSCSDGLKGLNDLGTLP 795
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG 313
L +L L + SD E SL L++ E+TD + L +T+LE L+L CG
Sbjct: 796 RLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMRKELTD--ITPLSNITSLEELSLRECG 853
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAG 372
EG+ L L LK L+L + + +S L + ++ S+NL S ++D S ++
Sbjct: 854 DNLEGVGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNLASSWKLTDIS--HISN 911
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICG 431
L++L+ LNL +G AL+ L L L+L A +T Y+ K+L +L +
Sbjct: 912 LTALEELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVTLNLES 971
Query: 432 GGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
+TDA + +IK L L + C + + L L LN+ S I LR
Sbjct: 972 CDMTDASCLANIKTLEELHI----GRCKELRRGFSPLFTLPRLRILNLICSLIKDEDLRE 1027
Query: 491 LKPLKNLRSLTLESCKVTANDIKRL 515
++P + L L C+ NDI L
Sbjct: 1028 IQPPHTIEELNLSYCE-NLNDITPL 1051
>gi|432862145|ref|XP_004069745.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 403
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 162/286 (56%), Gaps = 25/286 (8%)
Query: 253 LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLN 308
+ SL LNL+ C Q++D + ++ + +L+ L+LG + IT+ L+ + GL L+SLN
Sbjct: 119 IPSLRLLNLSLCKQITDSSLGRIAQYLKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLN 178
Query: 309 LDSC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINL 357
L SC + D G+ +++G+ +L+ L L D Q + L+H+S GL L+ +NL
Sbjct: 179 LRSCRHVSDVGIGHISGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNL 238
Query: 358 SFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITD 412
SF G ISD + L+ ++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D
Sbjct: 239 SFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGD 297
Query: 413 SGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-G 469
AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+
Sbjct: 298 QSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADH 357
Query: 470 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
LT L +++ ++IT GL + L L+ L L ++T ++ R
Sbjct: 358 LTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTDSERVR 403
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 162/323 (50%), Gaps = 32/323 (9%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A L NL LDL
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNLEALDL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
C+ I G L+ GL KL+SLN++ C ++D + +SG+T +S C
Sbjct: 154 GGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMT--RSAAEGC------- 204
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGS 255
LS+ + C + L HV L KL +LNL C ++ A + LS +
Sbjct: 205 ------LSLEKLTLQDCQKLTDLSLKHVS-KGLNKLKVLNLSFCGGISDAGMIHLSHMAH 257
Query: 256 LFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLD 310
L LNL C +SD G + +GSL++ L++ F ++I D+ L ++ +GL L+SL+L
Sbjct: 258 LCSLNLRSCDNISDTGIMHLA-MGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLC 316
Query: 311 SCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGS 366
SC I D+G+ + + LK L + ++ GL ++ LT L I+L T I+
Sbjct: 317 SCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRG 376
Query: 367 LRKLAGLSSLKSLNLDARQITDT 389
L ++ L LK LNL Q+TD+
Sbjct: 377 LERITQLPCLKVLNLGLWQMTDS 399
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 161/314 (51%), Gaps = 30/314 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L+ L +S C ++TDS + YLK L
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNL 148
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALG-------- 254
++ CS I L + L KL LNL C V+ + +S +
Sbjct: 149 --EALDLGGCSNITNTGLL-LIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCL 205
Query: 255 SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 311
SL L L CQ L+D + SK + LKVLNL F I+D ++HL + +L SLNL S
Sbjct: 206 SLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRS 265
Query: 312 C-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL 367
C I D G+++L G L L++S ++G L +++ GL L+S++L ISD +
Sbjct: 266 CDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGI 325
Query: 368 -RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKN 423
R + + LK+LN+ +ITD GL + LT LT +DL+G +IT G +
Sbjct: 326 NRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPC 385
Query: 424 LRSLEICGGGLTDA 437
L+ L + +TD+
Sbjct: 386 LKVLNLGLWQMTDS 399
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 338 LNIGQCVRITDKG-------------------------LELIADHLTQLTGIDLYGCT-- 370
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++TD
Sbjct: 371 ---------------------KITKRGLERITQLPCLKVLNLGLWQMTD 398
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGL--CNLK-CLELSDTQVGSSGLRHLSG 348
++G+ ++ESLNL C G+G + ++ L NL C +++D+ +G R
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLG----RIAQY 144
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE+++L + I++ L +A GL LKSLNL + R ++D G+ ++ +T
Sbjct: 145 LKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGC 204
Query: 399 -GLTHLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L L L ++TD ++ N + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 205 LSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGG-ISDAGMIHLSHMAHLCSLNL 263
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ +
Sbjct: 264 RSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDD 323
Query: 511 DIKRL 515
I R+
Sbjct: 324 GINRM 328
>gi|290994542|ref|XP_002679891.1| predicted protein [Naegleria gruberi]
gi|284093509|gb|EFC47147.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 144/330 (43%), Gaps = 27/330 (8%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+G + L +L LD+ + G ++ + +L LNI N I K +
Sbjct: 51 VNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNN-INAGGTKSICE 109
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+T L L IS + + + G +Y+ G++ KLT L++
Sbjct: 110 MTQLTDLDISNNFIGNEGASYIGGMT--------------------------KLTNLSIS 143
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
+ + SL + +L LN++ C++ D+G S++ L L + NEI +
Sbjct: 144 ENHIGVEGIKSLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAI 203
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
+ L LN+ +G+EG + + L L++S ++ G + LS L+ L ++++
Sbjct: 204 SEMYQLTKLNIRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSLSKLSQLTKLDIN 263
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
I D ++ ++ L L L++ +I D G + ++ LT L + R+ + GA L
Sbjct: 264 TNEIGDEGMKSISKLDQLLYLDIGENEIGDIGTGLIIGMSKLTELLINDNRVGNDGAESL 323
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
L L+IC + D ++ + L L
Sbjct: 324 AQMHQLTQLDICNNPVNDDSLELLSKLPDL 353
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 129/263 (49%), Gaps = 1/263 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F+ KLT L++ V A + +S L L L+++ QL + G + ++ L LN
Sbjct: 34 FIRMCGKLTKLDVSSWLVNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLN 93
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I + +T L L++ + IG+EG + G+ L L +S+ +G G++
Sbjct: 94 ISRNNINAGGTKSICEMTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIK 153
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L + NL +N+S I D R ++ + L +L + +I G A++ + LT L+
Sbjct: 154 SLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLN 213
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ + + GA Y+ + L L+I ++ G K + LS LT L+++ N + D+ +
Sbjct: 214 IRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTN-EIGDEGM 272
Query: 465 ELISGLTGLVSLNVSNSRITSAG 487
+ IS L L+ L++ + I G
Sbjct: 273 KSISKLDQLLYLDIGENEIGDIG 295
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 1/195 (0%)
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ L L +S + + G + + +T L +++S I + + G++ L +L++
Sbjct: 86 MTQLTKLNISRNNINAGGTKSICEMTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISEN 145
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
I G+ +L + L L++ +I D GA + K L +LEI + G K I +
Sbjct: 146 HIGVEGIKSLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISE 205
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ LT LN+ N L ++ I + L L++S++RI+ G + L L L L + +
Sbjct: 206 MYQLTKLNIRYNV-LGNEGAHYIGIMEQLTELDISHNRISGEGAKSLSKLSQLTKLDINT 264
Query: 505 CKVTANDIKRLQSRD 519
++ +K + D
Sbjct: 265 NEIGDEGMKSISKLD 279
>gi|290977411|ref|XP_002671431.1| leucine rich repeat protein [Naegleria gruberi]
gi|284085000|gb|EFC38687.1| leucine rich repeat protein [Naegleria gruberi]
Length = 389
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 155/334 (46%), Gaps = 23/334 (6%)
Query: 130 LINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWC---NCITDSDMKPLSGLTNL 182
L N+ K+ L C I G + LK +L S++I +C N T S+MK L+
Sbjct: 68 LHNISKIKLRACDDYLESIKGLMEILKSYDQLRSVDIGYCYIGNSQTISEMKQLT----- 122
Query: 183 KSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLTLLNLE-- 238
SL I + V + G+ + L + + I C+ I L F ++ ++++ LN+
Sbjct: 123 -SLDIDNNCVDEQGVKLIGELHNLTRLNIGCNRI----GLEGFKSISGMKQMRDLNVSSS 177
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
G V A L +S L L N++ ++ ++G + ++ L +L++ N+I E +
Sbjct: 178 GAGVEGAKL--MSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSI 235
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
L L L + GIG EG +++ L +L L + Q+GS G + +S L L + +
Sbjct: 236 SQLERLTKLYISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYID 295
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
I ++ LS+LK L + QI D G +++ L LT L++ I D GA +
Sbjct: 296 SNEIGSEGANSISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSI 355
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
K L L I + D G K + + +L+N
Sbjct: 356 SQLKQLTRLHISCNRIGDQGAKLLNRMKINSLIN 389
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 143/322 (44%), Gaps = 33/322 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L+S+D +C G + + + LTSL NN + QG+K L NL +L
Sbjct: 93 LKSYDQLRSVDIGYCY---IGNSQTISEMKQLTSLDID-NNCVDEQGVKLIGELHNLTRL 148
Query: 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
++ C RI G ++ G+ ++ LN+ + K +S L +L IS +++ +
Sbjct: 149 NI-GCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEG-AKLMSQLKHLTKFNISGNEIGEE 206
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS 255
G + L+ LT+L++ + A S+S L
Sbjct: 207 GAKS--------------------------IGELKWLTMLDICSNQIGAEGAKSISQLER 240
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
L L ++ + +G + S++ L L +G N+I + + L L L +DS IG
Sbjct: 241 LTKLYISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIG 300
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
EG +++ L NLK L +SD Q+G G + +S L +L ++ + I D + ++ L
Sbjct: 301 SEGANSISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQ 360
Query: 376 LKSLNLDARQITDTGLAALTSL 397
L L++ +I D G L +
Sbjct: 361 LTRLHISCNRIGDQGAKLLNRM 382
>gi|290997259|ref|XP_002681199.1| predicted protein [Naegleria gruberi]
gi|284094822|gb|EFC48455.1| predicted protein [Naegleria gruberi]
Length = 449
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 163/362 (45%), Gaps = 35/362 (9%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNIK 163
L+N+TSL R N + M L L + + + T I G + L LES ++
Sbjct: 61 LNNITSLKVRFNTVVLIPRMNHLKHLEILENPNEKSQFTDIRVGTI--CKLKNLESFVVR 118
Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV-----IFILCSMII 217
+ N + + LS L+ L L+IS TDS + K SIS+ + I CS I
Sbjct: 119 FPNPRLPPEYFEKLSVLSKLTELEIS----TDSSNDWEKAKSISTFSQLTKLNIQCSKNI 174
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
+ V SL LT LN C +++ L L L L L+L++ + DG + + +
Sbjct: 175 NMIITSV--GSLSNLTYLNASQCNISSVNLKFLQ-LFKLTKLDLSKNNIGGDGMKVIALL 231
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-- 335
+LK LNL IT++C+ HL LT L LN+ IG+EGL ++ L NL L +
Sbjct: 232 TNLKYLNLQDCNITNDCITHLTSLTKLVHLNVGDNYIGNEGLFLISSLRNLTYLSVERGT 291
Query: 336 ---------------TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
++ G+ HL+ L NL ++ S I D + + L+S++ LN
Sbjct: 292 GRRFNERQVDIANQGMEINHQGIAHLTNLHNLRHLDFSGKPICDKGIEFIGKLNSIEILN 351
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
+ +R + +L L +L++ G I D GA L L L G++ GVK
Sbjct: 352 V-SRCNCSGDIESLQKSPHLINLNIVGNPIGDKGAEILSRM-TLEELNARNCGISYDGVK 409
Query: 441 HI 442
I
Sbjct: 410 LI 411
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 44/392 (11%)
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
I+ C T ++K L L+ LK L + ++ I YL ++ V F +I R+
Sbjct: 22 IQLSQCPTVDELKALRHLSALKELTLLRELPLSYGSIYYLNNITSLKVRFNTVVLIPRMN 81
Query: 221 CLHVF-----------LTSLQKLT---LLNLEGCPV-------TAACLDSLSALGSLFYL 259
L T ++ T L NLE V + LS L L L
Sbjct: 82 HLKHLEILENPNEKSQFTDIRVGTICKLKNLESFVVRFPNPRLPPEYFEKLSVLSKLTEL 141
Query: 260 NLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
++ +D + + S L LN+ ++ + + + L+NL LN C I
Sbjct: 142 EISTDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVN 201
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L L L L L+LS +G G++ ++ LTNL+ +NL I++ + L L+ L
Sbjct: 202 LKFLQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVH 260
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLF-----------------GARITDSGAAYLRNF 421
LN+ I + GL ++SL LT+L + G I G A+L N
Sbjct: 261 LNVGDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQVDIANQGMEINHQGIAHLTNL 320
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
NLR L+ G + D G++ I L+S+ +LN+S+ CN + +E + L++LN+ +
Sbjct: 321 HNLRHLDFSGKPICDKGIEFIGKLNSIEILNVSR-CNCSGD-IESLQKSPHLINLNIVGN 378
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
I G L + L L +C ++ + +K
Sbjct: 379 PIGDKGAEILSRM-TLEELNARNCGISYDGVK 409
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 343 LRHLSGLTNLESINL--SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+ HL L LE+ N FT I G++ KL L S + ++ L+ L+ L
Sbjct: 80 MNHLKHLEILENPNEKSQFTDIRVGTICKLKNLESF-VVRFPNPRLPPEYFEKLSVLSKL 138
Query: 401 THLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
T L++ D A + F L L I + + + LS+LT LN SQ CN+
Sbjct: 139 TELEISTDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQ-CNI 197
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+ L+ + L L L++S + I G++ + L NL+ L L+ C +T + I L S
Sbjct: 198 SSVNLKFLQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTS 254
>gi|440802686|gb|ELR23615.1| leucine rich repeat domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 431
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 186/429 (43%), Gaps = 50/429 (11%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ ++I L + LT +LE F+ ++ L L V D W+DV+ SSL
Sbjct: 29 LPIEVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGY-SSLTY 87
Query: 62 VDLSGS-DVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNA 118
+DLS S +TD+GL LK L+SL + C +I+D GL L NL +
Sbjct: 88 LDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHV-GGTM 146
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + A L +L + + TR L L+K + W + D +
Sbjct: 147 ITYYALAALNSLEDLQDVSVN-GTRFPDK--ALYTLLKRKEAPDSWA----EEDYGEVRQ 199
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
LT+ Q S + V D G+ LKGL S LH LNL
Sbjct: 200 LTD---FQASRTLVRDDGVRLLKGLGAS---------------LHT----------LNLA 231
Query: 239 GCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
P A L +L SL +L+++ +D K+ SL +LNL E+TDE +
Sbjct: 232 FNPGIADW-SFLGSLASLTHLDISLNVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPA 290
Query: 298 LKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L L+ L SL++ I L L L NL L L T VG R+L+ L L S
Sbjct: 291 LMELSQLRSLDVGKTAITHRALGPGLAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFK 350
Query: 357 LSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
+ G L G L +L++ Q+TD+GLA + L L + +++ ++T+ GA
Sbjct: 351 ------TTGLLELAKGRYPHLTALDVGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGA 404
Query: 416 AYLRNFKNL 424
++ L
Sbjct: 405 ELVQQLTGL 413
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 167/372 (44%), Gaps = 40/372 (10%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN-LKGLMKLESLNIKWCNCITDSDMK 174
A+ + G +L LDL RI GL LK + +L SL + C ITD+ +
Sbjct: 69 RAVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLA 128
Query: 175 PL-SGLTNLKSLQISCSKVTDSGIAYLKGL------SISSVIFILCSMIIRLFCLHVFLT 227
PL + NL+ + + + +T +A L L S++ F ++
Sbjct: 129 PLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALY----------- 177
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLG 286
TLL + P + A D + L +R + DDG +G SL LNL
Sbjct: 178 -----TLLKRKEAPDSWAEED-YGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLA 231
Query: 287 FNE-ITDECLV-HLKGLTNLE-SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
FN I D + L LT+L+ SLN+ G D+ ++ L +L L LS T++ G+
Sbjct: 232 FNPGIADWSFLGSLASLTHLDISLNV---GFTDQFAADVGKLSSLTLLNLSKTELTDEGI 288
Query: 344 RHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
L L+ L S+++ T I+ +L LA L +L +L+L + LT L LT
Sbjct: 289 PALMELSQLRSLDVGKTAITHRALGPGLAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTS 348
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
G G + +L +L++ LTD+G+ HI +L++L N+ N +T++
Sbjct: 349 FKTTGLLELAKG-----RYPHLTALDVGCDQLTDSGLAHIGELAALRNFNM-WNTKVTNQ 402
Query: 463 TLELISGLTGLV 474
EL+ LTGLV
Sbjct: 403 GAELVQQLTGLV 414
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 136/320 (42%), Gaps = 58/320 (18%)
Query: 244 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGL 301
A CL + L SLF ++RC+ ++D G + +L+ +++G IT L L L
Sbjct: 102 AECLKCMPQLRSLF---VDRCKRITDAGLAPLGTHCPNLRRVHVGGTMITYYALAALNSL 158
Query: 302 TNLESLNLDSCGIGDEGLVNLTG---------------LCNLKCLELSDTQVGSSGLRHL 346
+L+ ++++ D+ L L + L + S T V G+R L
Sbjct: 159 EDLQDVSVNGTRFPDKALYTLLKRKEAPDSWAEEDYGEVRQLTDFQASRTLVRDDGVRLL 218
Query: 347 SGL-TNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD---------------------- 382
GL +L ++NL+F GI+D S L L+SL L++
Sbjct: 219 KGLGASLHTLNLAFNPGIADWSF--LGSLASLTHLDISLNVGFTDQFAADVGKLSSLTLL 276
Query: 383 ---ARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAG 438
++TD G+ AL L+ L LD+ IT L NL +L + T+ G
Sbjct: 277 NLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPGLAKLPNLTALSLP---YTNVG 333
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNL 497
K + L+ L L + L LEL G L +L+V ++T +GL H+ L L
Sbjct: 334 GKFSRYLTVLHRLTSFKTTGL----LELAKGRYPHLTALDVGCDQLTDSGLAHIGELAAL 389
Query: 498 RSLTLESCKVTANDIKRLQS 517
R+ + + KVT + +Q
Sbjct: 390 RNFNMWNTKVTNQGAELVQQ 409
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 126/294 (42%), Gaps = 50/294 (17%)
Query: 242 VTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
V LD L SL YL+L N +++D G ECL K
Sbjct: 71 VEDTWLDVLKGYSSLTYLDLSNSYRITDTGLA--------------------ECL---KC 107
Query: 301 LTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
+ L SL +D C I D GL L C NL+ + + T + L L+ L +L+ ++++
Sbjct: 108 MPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVN 167
Query: 359 FTGISDGSL-----RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
T D +L RK A S + + RQ+TD A +L + D
Sbjct: 168 GTRFPDKALYTLLKRKEAPDSWAEEDYGEVRQLTD--FQASRTL------------VRDD 213
Query: 414 GAAYLRNF-KNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
G L+ +L +L + G+ D + L+SLT L++S N TD+ + L+
Sbjct: 214 GVRLLKGLGASLHTLNLAFNPGIADWSF--LGSLASLTHLDISLNVGFTDQFAADVGKLS 271
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
L LN+S + +T G+ L L LRSL + +T + ++ LPNL +
Sbjct: 272 SLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPGLAK-LPNLTA 324
>gi|351713942|gb|EHB16861.1| F-box/LRR-repeat protein 14 [Heterocephalus glaber]
Length = 399
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 27/319 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GSL LNL+ C Q++D + ++
Sbjct: 82 LSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQY 141
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL SC + D G+ +L G+
Sbjct: 142 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 201
Query: 328 --LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA 383
L+ L L D Q + +H+S G +NLSF G ISD L L+ + SL+SLNL +
Sbjct: 202 LGLEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRS 261
Query: 384 -RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 438
I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D G
Sbjct: 262 CDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDG 320
Query: 439 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 495
+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 INRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLP 380
Query: 496 NLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 381 CLKVLNLGLWQMTDSEKVR 399
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 173/356 (48%), Gaps = 49/356 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLKGLSISSVIFILCSM 215
LN+ C ITDS + ++ LK L++ CS +T++G+ L I+ + L S+
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGL-----LLIAWGLQRLKSL 174
Query: 216 IIRLFCLH---VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+R C H V + L +T EGC LG L L L CQ D +
Sbjct: 175 NLR-SCRHLSDVGIGHLAGMTRSAAEGC------------LG-LEQLTLQDCQKLTDLSQ 220
Query: 273 KFSKIGSL--KVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCN 327
S+ G ++LNL F I+D L+HL + +L SLNL SC I D G+++L G
Sbjct: 221 HISR-GRWRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR 279
Query: 328 LKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DA 383
L L++S +VG L +++ GL L+S++L ISD + R + + L++LN+
Sbjct: 280 LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQC 339
Query: 384 RQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
+ITD GL + L+ LT +DL+G RIT G + L+ L + +TD+
Sbjct: 340 VRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 395
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 33/245 (13%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + + L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNL 453
GL L L ++TD R R +L CGG ++DAG+ H+ + SL LNL
Sbjct: 201 CLGLEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNL 259
Query: 454 SQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ +
Sbjct: 260 RSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 319
Query: 511 DIKRL 515
I R+
Sbjct: 320 GINRM 324
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 143/301 (47%), Gaps = 69/301 (22%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDG----------GLEHLR---- 103
S++LSG ++TD+GL H +++ +L++L+ + C QI+D GLE L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 153
Query: 104 -------------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCT 142
GL L SL+ R ++ G+ AG+ + L +L L+ C
Sbjct: 154 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 213
Query: 143 RIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL 200
++ ++ +G + LN+ +C I+D+ + LS + +L+SL + SC ++D+GI +L
Sbjct: 214 KLTDLSQHISRGRWRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 273
Query: 201 K-------GLSIS--------SVIFI-----------LCSMIIRLFCLHVFLTSLQKLTL 234
GL +S S+ +I LCS I ++ + + L
Sbjct: 274 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 333
Query: 235 LNLEGC-PVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEIT 291
LN+ C +T L+ ++ L L ++L C +++ G E+ +++ LKVLNLG ++T
Sbjct: 334 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 393
Query: 292 D 292
D
Sbjct: 394 D 394
>gi|343419347|emb|CCD19427.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1478
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 224/437 (51%), Gaps = 47/437 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +S+L +L+ IT + + LI L LDL
Sbjct: 725 SRLETLNLMYCTGITD--VSPLSKMSSLYTLNLSYCTGIT--DVSPLSMLIRLETLDLTG 780
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAY 199
CT I + L L +LE+LN+++C IT D+ PLS L+ L++L + C+ +TD ++
Sbjct: 781 CTGI-TDVSPLSKLSRLETLNLRYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSP 835
Query: 200 LKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L LS + ++ + C+ I + L +++L+ L L + G +T + LS + +L
Sbjct: 836 LSKLSRLETLNLMYCTGITDVSPLS-LISNLRTLDLSHCTG--ITD--VSPLSLMSNLCS 890
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L L+ C D S + L+ L+L G ITD + L L+ LE+LNL C
Sbjct: 891 LYLSHCTGITD-VPPLSMLIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYC----T 943
Query: 318 GLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 374
G+ +++ L L LE + G + + LS L+ LE++NL + TGI+D S L+
Sbjct: 944 GITDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGITDVS--PLSDFI 1001
Query: 375 SLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG- 431
+L++L+L ITD ++ L+ L L +L L A ITD + L L L + G
Sbjct: 1002 NLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGITD--VSPLSTLIRLNVLYLSGC 1057
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
G+TD V + LSSL L+LS +TD + +S L+ L +LN+ + G+ +
Sbjct: 1058 TGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSKLSRLETLNL----MYCTGITDV 1109
Query: 492 KPL---KNLRSLTLESC 505
PL NLR+L L C
Sbjct: 1110 SPLSLISNLRTLDLSHC 1126
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 191/388 (49%), Gaps = 57/388 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
SNL++LD + C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 1116 SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPPLSMLIRLEKLDLSG 1171
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
CT I + L L +LE+LN+ +C IT D+ PLS ++NL SL +S C+ +TD
Sbjct: 1172 CTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD----- 1223
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
+S + SM+IR L+K L+L GC + LS L L L
Sbjct: 1224 -----VSPL-----SMLIR----------LEK---LDLSGCTGITD-VSPLSKLSRLETL 1259
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDE 317
NL C D SK+ L+ LNL + ITD + L ++NL SL L C GI D
Sbjct: 1260 NLMYCTGITD-VSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD- 1315
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
+ L+ L L+ L L G + + LS L+ LE++NL + TGI+D S L+ +S+L
Sbjct: 1316 -VPPLSKLSRLETLNLMYC-TGITDVSPLSKLSRLETLNLMYCTGITDVS--PLSLISNL 1371
Query: 377 KSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GG 433
++L+L ITD ++ L+ ++ L L L ITD L L ++ G G
Sbjct: 1372 RTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKSDLSGCTG 1427
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
+TD V + LS L LNL +TD
Sbjct: 1428 ITD--VSPLSKLSRLETLNLMYCTGITD 1453
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 180/356 (50%), Gaps = 43/356 (12%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLSISSVIFI 211
L +L++ C ITD + PLS L++L++L +S C+ +TD S ++ L+ +S
Sbjct: 426 LRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITDVSPLSKLSSLRTFDLSH---- 479
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
C+ I + L++L L +LNL GC A+ +DSL +L L L L+R ++D
Sbjct: 480 -CTGITDVS----PLSTLSGLEVLNLSGCTGVASGVDSLCSLRMLRELRLSRLAINDAVL 534
Query: 272 EKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ L+ L+L IT+ + L L+ LE LNL C + +++ L +L
Sbjct: 535 RDIVVLKCLRTLDLSHCTGITN--VSPLSTLSGLEVLNLSGCA----DITDISPLSDLNI 588
Query: 331 LELSDTQ--VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQI 386
+ + G + + LS L+ LE++NL + TGI+D S L+ +S+L++L+L I
Sbjct: 589 MHTLNLSFCTGITDVSPLSKLSRLETLNLMYCTGITDVS--PLSLISNLRTLDLSHCTGI 646
Query: 387 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 444
TD ++ L+ ++ L LDL ITD L L L++ G G+TD V +
Sbjct: 647 TD--VSPLSLISNLRTLDLSHCTGITD--VPPLSMLIRLEKLDLSGCTGITD--VSPLSK 700
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
LS L LNL +TD + +S L+ L +LN+ + G+ + PL + SL
Sbjct: 701 LSRLETLNLMYCTGITD--VSPLSKLSRLETLNL----MYCTGITDVSPLSKMSSL 750
>gi|315301494|ref|ZP_07872641.1| internalin A, partial [Listeria ivanovii FSL F6-596]
gi|313630136|gb|EFR98122.1| internalin A [Listeria ivanovii FSL F6-596]
Length = 759
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 133/471 (28%), Positives = 210/471 (44%), Gaps = 93/471 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ ++ +L + V+D+ + D + SL+ + + S G+E+L N+T L+F N
Sbjct: 54 AEVVKTNLGKATVSDT--VTQTDLDGITSLEADRNVIKSIAGVEYLN---NVTQLNFSYN 108
Query: 117 NAITAQGMKAFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ L NL KL L L L+ L L L + + N ITD + P
Sbjct: 109 Q------ITDLTPLANLSKLTSLVMNNNQVADLTPLQNLTSLTDLTL-FYNKITD--VTP 159
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+ LTNL +L I+ ++++D LT + LT
Sbjct: 160 LANLTNLTTLAITGNEISD-------------------------------LTPIGSLT-- 186
Query: 236 NLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
NLE + D L L +L LNL+ +++D +K+ +L+ L L N+ +D
Sbjct: 187 NLEALSIGNQVTDIKPLDKLTNLEQLNLSDNKITD--ISPVAKLINLQSLTLDNNQFSD- 243
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L LTNL L+L S + D G L L NLK L L D Q+ S L +S LTNL
Sbjct: 244 -LTPLGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLMDNQI--SNLAPISNLTNLT 298
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+N+S ISD L+ ++ L++L L + Q+ D ++ ++SLT L L L+ +I+D
Sbjct: 299 DLNVSTNQISD--LKPISNLTNLTVLQVPTNQVED--ISPISSLTNLDFLTLYSNQISD- 353
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ L N L+ L ++D V + +L++L L+ N IS LT L
Sbjct: 354 -ISPLENLTKLKQLFFYDNKVSD--VSPLANLTTLQELSAGTNQ---------ISDLTPL 401
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
L +R+T GL + KVT+ +K + +PN V
Sbjct: 402 AKL----TRLTQLGL--------------DKQKVTSQPVKYQSNIVVPNAV 434
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 186/420 (44%), Gaps = 88/420 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+++ ++ S + +TD L L + S L SL N Q++D L L+ L++LT L+ N
Sbjct: 98 NNVTQLNFSYNQITD--LTPLANLSKLTSLVMNNN-QVAD--LTPLQNLTSLTDLTLFYN 152
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSD 172
IT + A L NL L I G L + L LE+L+I N +TD
Sbjct: 153 -KIT--DVTPLANLTNLTTL------AITGNEISDLTPIGSLTNLEALSI--GNQVTD-- 199
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+KPL LTNL+ L +S +K+TD S + +L +LQ L
Sbjct: 200 IKPLDKLTNLEQLNLSDNKITD------------------ISPVAKLI-------NLQSL 234
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
TL N + +T L L +L L+L LSD G + + +LK LNL N+I++
Sbjct: 235 TLDNNQFSDLTP-----LGILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLMDNQISN 287
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
L + LTNL LN+ + I D L ++ L NL L++ QV + +S LTNL
Sbjct: 288 --LAPISNLTNLTDLNVSTNQISD--LKPISNLTNLTVLQVPTNQV--EDISPISSLTNL 341
Query: 353 ESINLSFTGISDGS--------------------LRKLAGLSSLKSLNLDARQITDTGLA 392
+ + L ISD S + LA L++L+ L+ QI+D L
Sbjct: 342 DFLTLYSNQISDISPLENLTKLKQLFFYDNKVSDVSPLANLTTLQELSAGTNQISD--LT 399
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNF------KNLRSLEICGGGLTDAGVKHIKDLS 446
L LT LT L L ++T Y N KN+ I ++D G D++
Sbjct: 400 PLAKLTRLTQLGLDKQKVTSQPVKYQSNIVVPNAVKNVTGALINPATISDNGTYTNPDIT 459
>gi|290980460|ref|XP_002672950.1| predicted protein [Naegleria gruberi]
gi|284086530|gb|EFC40206.1| predicted protein [Naegleria gruberi]
Length = 331
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 4/210 (1%)
Query: 270 GCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
G EK I +K L ++ +N I E + + L SLN++ IG EG ++G+
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L L + + ++G G +++S + L S+++ I D ++ ++ + L SLN+ I
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
D G + + LT L++ I D GA Y+ K L SL I + +AG K I ++
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMK 300
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
LT L+++ N + + + IS + L+SL
Sbjct: 301 QLTSLDIAGN-RIGGEGAKFISEMKQLISL 329
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
G E L ++ + L L++S ++ G + +S + L S+N++ I + ++G+
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L SL + +I G ++ + L LD+ G +I D + K L SL I +
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
DAG K I D+ LT LN+S N + D+ + I+ + L SLN++ + I +AG + + +
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNV-IGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEM 299
Query: 495 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528
K L SL + ++ K + ++ L+S R
Sbjct: 300 KQLTSLDIAGNRIGGEGAKFIS--EMKQLISLRK 331
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 6/234 (2%)
Query: 217 IRLFCLHVFLTSLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
+ LF F+ S+ L L L G L +S + L L+++ ++ +G +
Sbjct: 97 VELFMKSQFMNSIVNLKFLGYLLGGIE----KLKFISEMKQLISLDISYNRIDGEGAKLI 152
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ L LN+ N I E + G+ L SL + + IG EG ++ + L L++
Sbjct: 153 SEMKQLTSLNINGNVIGGEGAKFISGMKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIG 212
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
Q+G ++ +S + L S+N++ I D + + + L SLN+ I D G +
Sbjct: 213 GNQIGDEEVKLISEMKQLTSLNIANNVIGDAGAKFIGDMKQLTSLNISYNVIGDEGAKYI 272
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+ LT L++ I ++GA ++ K L SL+I G + G K I ++ L
Sbjct: 273 NEMKQLTSLNITRNEIGNAGAKFISEMKQLTSLDIAGNRIGGEGAKFISEMKQL 326
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 12/173 (6%)
Query: 355 INLSFTGISDGSLRKLAGLSSLK---SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
+NL F G G + KL +S +K SL++ +I G ++ + LT L++ G I
Sbjct: 110 VNLKFLGYLLGGIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIG 169
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
GA ++ K L SL I + G K+I ++ L L++ N + D+ ++LIS +
Sbjct: 170 GEGAKFISGMKQLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGN-QIGDEEVKLISEMK 228
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-------ESCKVTANDIKRLQS 517
L SLN++N+ I AG + + +K L SL + E K N++K+L S
Sbjct: 229 QLTSLNIANNVIGDAGAKFIGDMKQLTSLNISYNVIGDEGAKYI-NEMKQLTS 280
>gi|290990752|ref|XP_002678000.1| predicted protein [Naegleria gruberi]
gi|284091610|gb|EFC45256.1| predicted protein [Naegleria gruberi]
Length = 369
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 2/239 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+S L L YL++ + + G + SK+ +LK L + N I + + + L SL +
Sbjct: 130 ISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQIPLNNIGPNGAISISKMKQLTSLVI 189
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLR 368
I EG + + NLK L++S G G+R LS GL NL S+++S I+ +
Sbjct: 190 CWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRLLSSGLVNLTSLDVSRNEINPEGAK 249
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
L + +L L + G+ ++ L LT LD+ I GA +++ KNL+ L
Sbjct: 250 YLGEMKNLIELRATFNIVELGGIKFISQLRNLTLLDVQSNIIESEGARFIKKLKNLKILN 309
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
+ + G +I +++ LT L++S N + + IS L LV L++S++ I G
Sbjct: 310 VSATKMNATGANYIGEMTQLTELDISYN-HFGVEGARAISRLPNLVILDISSNNIGPEG 367
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 162/389 (41%), Gaps = 48/389 (12%)
Query: 22 EVSLEAFRDCALQDLCLGQY-------------PGVNDKWMDVIASQGSSLLSVDLSGSD 68
EVS+ F D L D + + P ++ +W + +Q S L +D
Sbjct: 11 EVSIRNFSDNFLPDDIIHEIMSFLTGWEILKYCPLISKQWTYFLINQYSKL-CLDFH-QI 68
Query: 69 VTDSGLIHLKDCSNLQSL---DFNFCIQISDGG-LEHLRGLSNLTSLSFRRNNAITAQGM 124
+ + + HL++ L S+ N+ I D L L + NLT LS N + +
Sbjct: 69 IQEERVQHLRNSQVLNSIRNVKVNYANLIRDKQFLTVLSLMKNLTCLSINEN-GLKEKEA 127
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K + L L LD+ + N + K +S + NLK+
Sbjct: 128 KLISKLKELTYLDIGK-------------------------NSVGRKGAKYISKMKNLKT 162
Query: 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMI-IRLFCLHVFLTSLQKLTLLNLEGCPVT 243
LQI + + +G + + + + I +MI + F + +L+ L + P
Sbjct: 163 LQIPLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEG 222
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
L S L +L L+++R +++ +G + ++ +L L FN + + + L N
Sbjct: 223 MRLLSS--GLVNLTSLDVSRNEINPEGAKYLGEMKNLIELRATFNIVELGGIKFISQLRN 280
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L L++ S I EG + L NLK L +S T++ ++G ++ +T L +++S+
Sbjct: 281 LTLLDVQSNIIESEGARFIKKLKNLKILNVSATKMNATGANYIGEMTQLTELDISYNHFG 340
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLA 392
R ++ L +L L++ + I G A
Sbjct: 341 VEGARAISRLPNLVILDISSNNIGPEGAA 369
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LS + NL ++++ G+ + + ++ L L L++ + G ++ + L L +
Sbjct: 106 LSLMKNLTCLSINENGLKEKEAKLISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQI 165
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
I +GA + K L SL IC + G + I +++L L +S N +
Sbjct: 166 PLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRL 225
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
L SGL L SL+VS + I G ++L +KNL L
Sbjct: 226 LSSGLVNLTSLDVSRNEINPEGAKYLGEMKNLIEL 260
>gi|18568221|gb|AAL75965.1|AF467461_1 PpaA [Danio rerio]
Length = 386
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 151/271 (55%), Gaps = 23/271 (8%)
Query: 255 SLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLD 310
SL LNL+ C Q++D + ++ + +L++L+LG + IT+ L+ + GL NL+SLNL
Sbjct: 113 SLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLR 172
Query: 311 SC-GIGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF 359
SC + D G+ +L G+ L+ L L D Q + L+H+S GL L+ +NLSF
Sbjct: 173 SCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSF 232
Query: 360 TG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDL-FGARITDSGA 415
G ISD + L+ ++ L +LNL + I+DTG+ L+ L LD+ F ++ D
Sbjct: 233 CGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSL 292
Query: 416 AYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTG 472
AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ LT
Sbjct: 293 AYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQ 352
Query: 473 LVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L +++ ++IT GL + L L+ L
Sbjct: 353 LTGIDLYGCTKITKRGLERITQLPCLKVFNL 383
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 109/330 (33%), Positives = 170/330 (51%), Gaps = 42/330 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 63 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 116
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITDS + ++ L NL+ L + CS +T++G+ L I+ + L S+ +
Sbjct: 117 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGL-----LLIAWGLHNLKSLNL 171
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQ-LSDDGCEKF 274
R C HV + + +L G +AA CL +L +L L CQ L+D +
Sbjct: 172 R-SCRHV-----SDVGIGHLAGMTRSAAEGCL-------TLEHLTLQDCQKLTDLSLKHI 218
Query: 275 SK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKC 330
SK + LK LNL F I+D ++HL +T L +LNL SC I D G+++L+ G L
Sbjct: 219 SKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYG 278
Query: 331 LELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQI 386
L++S +VG L +++ GL L+S++L ISD + R + + LK+LN+ +I
Sbjct: 279 LDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRI 338
Query: 387 TDTGLAALT-SLTGLTHLDLFG-ARITDSG 414
TD GL + LT LT +DL+G +IT G
Sbjct: 339 TDKGLELIADHLTQLTGIDLYGCTKITKRG 368
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 150/298 (50%), Gaps = 28/298 (9%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L + + L NL L
Sbjct: 89 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGC 148
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL NL L+L C + G+ +L G+ + LE L ++ C
Sbjct: 149 SNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQ 208
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLH 223
+TD +K +S GL LK L +S C ++D+G+ +L ++ + ++ C I +H
Sbjct: 209 KLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMH 268
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKF-SKIG 278
+ + +L +L L++ C SL+ + Y L+L C +SDDG + ++
Sbjct: 269 LSMGAL-RLYGLDVSFCDKVGD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMH 325
Query: 279 SLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 333
LK LN+G ITD+ L + LT L ++L C I GL +T L LK L
Sbjct: 326 ELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVFNL 383
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 131/261 (50%), Gaps = 17/261 (6%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 125 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184
Query: 102 LRGLSN--------LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
L G++ L L+ + +T +K + GL L L+L C I G+++L
Sbjct: 185 LAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHL 244
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVI 209
+ +L +LN++ C+ I+D+ + LS G L L +S C KV D +AY+
Sbjct: 245 SHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKS 304
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QL 266
LCS I ++ + + +L LN+ C +T L+ ++ L L ++L C ++
Sbjct: 305 LSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKI 364
Query: 267 SDDGCEKFSKIGSLKVLNLGF 287
+ G E+ +++ LKV NLG
Sbjct: 365 TKRGLERITQLPCLKVFNLGL 385
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 30/244 (12%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + ++ L L C +++D+ +G R
Sbjct: 81 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLG----RIAQY 136
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE ++L + I++ L +A GL +LKSLNL + R ++D G+ L +T
Sbjct: 137 LKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGC 196
Query: 399 -GLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 454
L HL L ++TD ++ + L+ L + GG++DAG+ H+ ++ L LNL
Sbjct: 197 LTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLR 256
Query: 455 QNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 511
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ +
Sbjct: 257 SCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDG 316
Query: 512 IKRL 515
I R+
Sbjct: 317 INRM 320
>gi|428173790|gb|EKX42690.1| hypothetical protein GUITHDRAFT_73681, partial [Guillardia theta
CCMP2712]
Length = 439
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 173/348 (49%), Gaps = 11/348 (3%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
+ + +T + +GL++L++L++S ++++ GLS + + + ++ L +
Sbjct: 2 YWSYLTSLPLGVFNGLSSLQTLELSNNRLSSLSEGVFSGLSALQFLQLHHNALLNLPS-N 60
Query: 224 VF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
VF L+SLQ+L + N ++ ++ L SL L+L+ QLS + F+ SL+
Sbjct: 61 VFDGLSSLQQLYVHN---NVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQ 117
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVG 339
L+L N+IT+ +GL L+ L L + EG+ +GL L+ L L + +V
Sbjct: 118 TLSLFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGV--FSGLSGLQILSLYNNRVT 175
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
S SGL+ L+ ++L+ ISD SL GLS LK+LNL++ Q++ A L+
Sbjct: 176 SLPSNAFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSA 235
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L L L G RI+ L L + L + LS+L LL++ QN +
Sbjct: 236 LQQLQLDGNRISSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDI-QNNQI 294
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+ + +GLT L SL+++ +++TS L+ L SL L S ++
Sbjct: 295 SSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLILSSNQL 342
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 182/427 (42%), Gaps = 56/427 (13%)
Query: 105 LSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
S L++L F + +NA+ F GL +L +L + G KGL L++L++
Sbjct: 38 FSGLSALQFLQLHHNALLNLPSNVFDGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLDL 97
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
+ N ++ +G ++L++L + +K+T+ +GL L L
Sbjct: 98 SY-NQLSTLPPDSFNGSSSLQTLSLFSNKITNISSDAFRGLP-------------GLKYL 143
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
+F L L+ EG S L L L+L +++ FS + L+
Sbjct: 144 GLFDNQLSSLS----EGV---------FSGLSGLQILSLYNNRVTSLPSNAFSGLSVLQE 190
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+L N+I+D L GL+ L++LNL+S + GL L+ L+L ++ S
Sbjct: 191 LDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRISSIS 250
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ GL+ LE +++SF + GLS+LK L++ QI+ A LT LT
Sbjct: 251 MDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTS 310
Query: 403 LDLFGARITD------SGAAYLRN--------------------FKNLRSLEICGGGLTD 436
L L G ++T G YL + F NL L + LT
Sbjct: 311 LSLNGNKLTSIPAGVFDGLQYLESLILSSNQLECISSNAFASLLFLNLEELYLSYNQLTS 370
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
+ LS L L LS N ++ + + +GL+ L LN+ ++ + S L L +
Sbjct: 371 LPLGVFNGLSKLVTLTLSNN-HVKELPAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTS 429
Query: 497 LRSLTLE 503
L +TLE
Sbjct: 430 LEQVTLE 436
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 173/412 (41%), Gaps = 63/412 (15%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK-----GLMK 156
GLS+L +L NN +++ F+GL L L L H L+NL GL
Sbjct: 14 FNGLSSLQTLELS-NNRLSSLSEGVFSGLSALQFLQLH-----HNALLNLPSNVFDGLSS 67
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
L+ L + N ++ GL +L++L +S ++++ G S
Sbjct: 68 LQQLYVH-NNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSS------------ 114
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
SLQ L+L + +T D+ L L YL L QLS FS
Sbjct: 115 -----------SLQTLSLFS---NKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSG 160
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
+ L++L+L N +T GL+ L+ L+L++ I D L GL LK L L+
Sbjct: 161 LSGLQILSLYNNRVTSLPSNAFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLNLNSN 220
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
Q+ S GL+ L+ + L IS S+ GLS+L+ L++ Q+ +
Sbjct: 221 QLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSALEELHMSFNQLQTVLSSNFNG 280
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GVKHIKDL----- 445
L+ L LD+ +I+ + L SL + G LT G+++++ L
Sbjct: 281 LSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLILSSN 340
Query: 446 ----------SSLTLLNLSQ----NCNLTDKTLELISGLTGLVSLNVSNSRI 483
+SL LNL + LT L + +GL+ LV+L +SN+ +
Sbjct: 341 QLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNNHV 392
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 165/359 (45%), Gaps = 39/359 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
K ++LQ+LD ++ Q+S + G S+L +LS N IT AF GL L L
Sbjct: 86 FKGLASLQNLDLSYN-QLSTLPPDSFNGSSSLQTLSLFSN-KITNISSDAFRGLPGLKYL 143
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L + + + G+ GL L+ L++ + N +T SGL+ L+ L ++ ++++D
Sbjct: 144 GLFDNQLSSLSEGV--FSGLSGLQILSL-YNNRVTSLPSNAFSGLSVLQELDLNNNQISD 200
Query: 195 SGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQKLTLLNLEGCPVTAACLDSLSAL 253
++ GLS + + + + L F L++LQ+L L +G +++ +D+ L
Sbjct: 201 ISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQL---DGNRISSISMDAFDGL 257
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD--- 310
+L L+++ QL F+ + +LK+L++ N+I+ GLT L SL+L+
Sbjct: 258 SALEELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNK 317
Query: 311 ----SCGIGDEGLVNLTGLC--------------------NLKCLELSDTQVGSSGLRHL 346
G+ D GL L L NL+ L LS Q+ S L
Sbjct: 318 LTSIPAGVFD-GLQYLESLILSSNQLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVF 376
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+GL+ L ++ LS + + GLSSLK LNL ++ L LT L + L
Sbjct: 377 NGLSKLVTLTLSNNHVKELPAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTL 435
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 11/241 (4%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-----GLCNL 328
F+ + SL+ L L N ++ GL+ L+ L L L+NL GL +L
Sbjct: 14 FNGLSSLQTLELSNNRLSSLSEGVFSGLSALQFLQLH-----HNALLNLPSNVFDGLSSL 68
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
+ L + + + + G GL +L++++LS+ +S G SSL++L+L + +IT+
Sbjct: 69 QQLYVHNNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSLFSNKITN 128
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
A L GL +L LF +++ L+ L + +T LS L
Sbjct: 129 ISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNAFSGLSVL 188
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L+L+ N ++D +L +GL+GL +LN+++++++S L L+ L L+ +++
Sbjct: 189 QELDLNNN-QISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQLDGNRIS 247
Query: 509 A 509
+
Sbjct: 248 S 248
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 127/291 (43%), Gaps = 16/291 (5%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GLS L LS NN +T+ AF+GL L +LDL L GL L++LN
Sbjct: 158 FSGLSGLQILSLY-NNRVTSLPSNAFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLN 216
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+ N ++ GL+ L+ LQ+ ++++ + GLS L + +
Sbjct: 217 LN-SNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSA------LEELHMSFNQ 269
Query: 222 LHVFLTS----LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
L L+S L L LL+++ +++ + + L +L L+LN +L+ F +
Sbjct: 270 LQTVLSSNFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGL 329
Query: 278 GSLKVLNLGFNE---ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
L+ L L N+ I+ L L NLE L L + L GL L L LS
Sbjct: 330 QYLESLILSSNQLECISSNAFASLLFL-NLEELYLSYNQLTSLPLGVFNGLSKLVTLTLS 388
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ V +GL++L+ +NL + L GL+SL+ + L+ Q
Sbjct: 389 NNHVKELPAGVFNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTLEWNQ 439
>gi|421610748|ref|ZP_16051914.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
gi|408498532|gb|EKK03025.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
Length = 341
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 2/219 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L L L + G A S+S L +L + ++DDG +++ L+ ++L
Sbjct: 113 LAALPNLKRLRVYGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSL 172
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+ +TD+ L + L L LNL I E ++ L L+ LEL++T G G+
Sbjct: 173 MNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPA 231
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 404
++ + LE INL T I + SL+ G +SL LN+D IT+ + + SL L L
Sbjct: 232 IANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLH 291
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
L ++ L+ + L +L + GL + K ++
Sbjct: 292 LGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELE 330
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 5/229 (2%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L+
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
+ ++ S + + ++L KLT LNL G +T + +S L L L L
Sbjct: 167 LQDVSLMNSPVTDKTLASI--STLPKLTKLNLRGTKITGEAFEPISKL-PLESLELAETD 223
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
+G + I L+ +NL +I +E L +G T+L LN+D+C I +E + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
L +LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)
Query: 256 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
D +++GL L + DT V G L+ L L+ ++L + ++D +L ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L LNL +IT ++ L L L+L G + N + L + +
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+ + +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Query: 494 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
L+ L +L + + + K L++ PNL F
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V L S VTD L + L L+ +I+ E + L L SL +
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+GM A A + L K++L + L +G L LN+ C IT+ + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
L +LK L + + V+ + LK L +F+
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFV 316
>gi|320165522|gb|EFW42421.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 743
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 125/281 (44%), Gaps = 1/281 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L LT L L+ +T+ D+ L L L LN Q++ + F + L+ L L +N
Sbjct: 81 LTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQITSFPADTFIGLTFLRELFLNYN 140
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+IT T L L+L S I GL LK L + Q S +G
Sbjct: 141 QITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKNLYMDFNQFTSIPANTFTG 200
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
LT L ++L I+ GL++L L+L QIT+T + A T LT LTHLDL
Sbjct: 201 LTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDN 260
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
RIT A+ LR L + G +T L++L L L+ N ++ + +
Sbjct: 261 RITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTTN-QISSISTSAFA 319
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
GLT L ++++N+ ITS L L L L ++T+
Sbjct: 320 GLTVLTEMSLNNNSITSISANTFAVLTALTILDLSDNQITS 360
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 157/372 (42%), Gaps = 29/372 (7%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ NN+IT AFAGL L +L+L+ GL L L + + N IT
Sbjct: 64 YLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNY-NQITSFP 122
Query: 173 MKPLSGLTNLKSLQISCSKVTD---SGIAYLKGL-----------SISSVIFILCSMIIR 218
GLT L+ L ++ +++T S A L S + FI +M+
Sbjct: 123 ADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKN 182
Query: 219 LFC-LHVF-------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
L+ + F T L LT L+L + + ++ + L +L +L+L Q+++
Sbjct: 183 LYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTS 242
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ F+ + +L L+L N IT GLT L LNL+ I +GL L
Sbjct: 243 VDAFTGLTALTHLDLTDNRITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNY 302
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L+ Q+ S +GLT L ++L+ I+ S A L++L L+L QIT
Sbjct: 303 LFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSISANTFAVLTALTILDLSDNQITSIP 362
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGVKHIKD 444
A SLT L L L +IT A + L L + LT G+ +
Sbjct: 363 ADAFASLTALDTLSLNDNQITSIPANAFTSLTTLHRLPLENNPLTTLPPGLFKGLPYGLL 422
Query: 445 LSSLTLLNLSQN 456
LSS + NLS N
Sbjct: 423 LSSSFMPNLSPN 434
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 1/256 (0%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
G+ L LN ++ F+ + +L L L N+IT GLT L L L+
Sbjct: 58 GTTTQLYLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQ 117
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
I GL L+ L L+ Q+ S + T L ++L I+ GL
Sbjct: 118 ITSFPADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGL 177
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
+ LK+L +D Q T T LT LT L L +I A L L++
Sbjct: 178 TMLKNLYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQ 237
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+T+ V L++LT L+L+ N +T + SGLT L LN++ ++IT+
Sbjct: 238 ITNTSVDAFTGLTALTHLDLTDN-RITTISASTFSGLTALRLLNLNGNQITTISANTFSG 296
Query: 494 LKNLRSLTLESCKVTA 509
L L L L + ++++
Sbjct: 297 LTTLNYLFLTTNQISS 312
>gi|440712554|ref|ZP_20893170.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
gi|436442709|gb|ELP35820.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
Length = 341
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 2/219 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L L L + G A S+S L +L + ++DDG +++ L+ ++L
Sbjct: 113 LAALPNLKRLRVYGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSL 172
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+ +TD+ L + L L LNL I E ++ L L+ LEL++T G G+
Sbjct: 173 MNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPA 231
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 404
++ + LE INL T I + SL+ G +SL LN+D IT+ + + SL L L
Sbjct: 232 IANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLH 291
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
L ++ L+ + L +L + GL + K ++
Sbjct: 292 LGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELE 330
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 5/229 (2%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L+
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
+ ++ S + + ++L KLT LNL G +T + +S L L L L
Sbjct: 167 LQDVSLMNSPVTDKTLASI--STLPKLTKLNLRGTKITGEAFEPISKL-PLESLELAETD 223
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
+G + I L+ +NL +I +E L +G T+L LN+D+C I +E + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
L +LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)
Query: 256 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
D +++GL L + DT V G L+ L L+ ++L + ++D +L ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L LNL +IT ++ L L L+L G + N + L + +
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+ + +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Query: 494 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
L+ L +L + + + K L++ PNL F
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V L S VTD L + L L+ +I+ E + L L SL +
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+GM A A + L K++L + L +G L LN+ C IT+ + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
L +LK L + + V+ + LK L +F+
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFV 316
>gi|32477277|ref|NP_870271.1| G protein-coupled receptor LGR4 [Rhodopirellula baltica SH 1]
gi|32447828|emb|CAD77346.1| probable G protein-coupled receptor LGR4 [Rhodopirellula baltica SH
1]
Length = 341
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 2/219 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L L L + G A S+S L +L + ++DDG +++ L+ ++L
Sbjct: 113 LAALPNLKRLRVYGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSL 172
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+ +TD+ L + L L LNL I E ++ L L+ LEL++T G G+
Sbjct: 173 MKSPVTDKTLTSISTLPKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPA 231
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 404
++ + LE INL T I + SL+ G +SL LN+D IT+ + + SL L L
Sbjct: 232 IANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLH 291
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
L ++ L+ + L +L + GL + K ++
Sbjct: 292 LGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELE 330
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 5/229 (2%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L+
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
+ ++ S + + ++L KLT LNL G +T + +S L L L L
Sbjct: 167 LQDVSLMKSPVTDKTLTSI--STLPKLTKLNLRGTKITGEAFEPISKL-PLESLELAETD 223
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
+G + I L+ +NL +I +E L +G T+L LN+D+C I +E + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
L +LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)
Query: 256 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
D +++GL L + DT V G L+ L L+ ++L + ++D +L ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTL 188
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L LNL +IT ++ L L L+L G + N + L + +
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+ + +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKP 307
Query: 494 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
L+ L +L + + + K L++ PNL F
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V L S VTD L + L L+ +I+ E + L L SL +
Sbjct: 167 LQDVSLMKSPVTDKTLTSISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+GM A A + L K++L + L +G L LN+ C IT+ + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIVS 283
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
L +LK L + + V+ + LK L +F+
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFV 316
>gi|290995863|ref|XP_002680502.1| predicted protein [Naegleria gruberi]
gi|284094123|gb|EFC47758.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 108/220 (49%), Gaps = 1/220 (0%)
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ F + L ++ + + D + +T L SLN+ + + + + NL CL
Sbjct: 119 DAFKLMKGLTTFDISYTYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCL 178
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
+ + +G +H+S + L +++ GI + ++ L L L++ + I + G
Sbjct: 179 NIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGA 238
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
++ L LT+LD++ RI GA ++ K L L I + G K+I ++ L L
Sbjct: 239 KYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINVEGAKYISEMKQLINL 298
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
N+++N N+ D+ ISG+ L +L + N+ I++AG +++
Sbjct: 299 NITKN-NIGDEGARHISGMNQLTNLFIGNNNISNAGFQNI 337
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 7/228 (3%)
Query: 277 IGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
I S+K LN N + + +KGLT + ++ + D ++ + L L +S
Sbjct: 102 IASVKALN-AINHLIQYRDAFKLMKGLT---TFDISYTYVHDREAKIISEMTQLTSLNVS 157
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
++ + + + NL +N+ GI + ++ + L L++ I G +
Sbjct: 158 NSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFI 217
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
+ L LT LD+ I + GA Y+ K L +L+I + G KHI ++ LT LN+S
Sbjct: 218 SELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNIS 277
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
N ++ + + IS + L++LN++ + I G RH+ + L +L +
Sbjct: 278 YN-DINVEGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLFI 324
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 97/214 (45%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
++ LT ++ V +S + L LN++ F ++ +L LN+G N
Sbjct: 124 MKGLTTFDISYTYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCLNIGNN 183
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I EC H+ + L L++ GI EG ++ L L L++S +G G +++S
Sbjct: 184 GIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGAKYISQ 243
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L L ++++ I + ++ + L LN+ I G ++ + L +L++
Sbjct: 244 LKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINVEGAKYISEMKQLINLNITKN 303
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
I D GA ++ L +L I +++AG ++I
Sbjct: 304 NIGDEGARHISGMNQLTNLFIGNNNISNAGFQNI 337
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 128/290 (44%), Gaps = 49/290 (16%)
Query: 134 VKLDLERCTRIHGG-LVNLKGLMKLESLN--IKWCNCITDSDMKPLSGLTNLKSLQISCS 190
V++D+ + +R+ G L N+ + L ++N I++ + K + GLT + IS +
Sbjct: 84 VRIDIGKMSRVQGQFLENIASVKALNAINHLIQYRDA-----FKLMKGLT---TFDISYT 135
Query: 191 KVTD------SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
V D S + L L++S+ I I S+ + + LT LN+ +
Sbjct: 136 YVHDREAKIISEMTQLTSLNVSNSIRIKKSI--------AYFREMNNLTCLNIGNNGIGV 187
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
C + S++ L +L++ N I E + L L
Sbjct: 188 EC------------------------AKHVSEMKQLTILHICGNGIKFEGAKFISELQQL 223
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L++ S IG++G ++ L L L++ ++G+ G +H+S + L +N+S+ I+
Sbjct: 224 TKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINV 283
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ ++ + L +LN+ I D G ++ + LT+L + I+++G
Sbjct: 284 EGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLFIGNNNISNAG 333
>gi|290980344|ref|XP_002672892.1| predicted protein [Naegleria gruberi]
gi|284086472|gb|EFC40148.1| predicted protein [Naegleria gruberi]
Length = 283
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN++ IG EG ++G+ L L +S +G G + +S + L SIN+S+
Sbjct: 131 MKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINISYN 190
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I + ++ + L SLN+ I DTG ++ + LT LD++ RI GA Y+
Sbjct: 191 RICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYISE 250
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
K L SL+I G + D VK I ++ LT L
Sbjct: 251 MKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++ + L L ++ +G+ G + +SG+ L S+N+S+ I D + ++ + L S+N+
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+I G ++ + LT L++ I D+GA ++ K L SL+I + G K+
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
I ++ LT L++ N + D+ ++LIS + L SL
Sbjct: 248 ISEMKQLTSLDIGGN-QIGDEEVKLISEMKQLTSL 281
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 82/155 (52%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT LN+ G + A +S + L LN++ + D G + S++ L +N
Sbjct: 127 FISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISIN 186
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ +N I E + + L SLN+ + IGD G ++G+ L L++ + ++G G +
Sbjct: 187 ISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAK 246
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
++S + L S+++ I D ++ ++ + L SL
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
++ + L SLN++ I G ++ + LT L++ I D GA + K L S+ I
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ G K I ++ LT LN++ N + D + ISG+ L SL++ N+RI G +
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNS-IGDTGAKFISGMKELTSLDIYNNRIGREGAK 246
Query: 490 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528
++ +K L SL + ++ ++K + ++ L S R
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLIS--EMKQLTSLRK 283
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 75/154 (48%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+S + L LN+N + +G + S + L LN+ +N I D+ + + L S+N+
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
I EG ++ + L L +++ +G +G + +SG+ L S+++ I +
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
++ + L SL++ QI D + ++ + LT L
Sbjct: 248 ISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 14/158 (8%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG---IAYLKGL-SISSVI 209
+ +L SLNI N I K +SG+ L SL IS + + D G I+ +K L SI+
Sbjct: 131 MKELTSLNIN-GNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINISY 189
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
+C + F++ +++LT LN+ + +S + L L++ ++ +
Sbjct: 190 NRICGEGAK------FISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGRE 243
Query: 270 GCEKFSKIGSLKVLNLGFNEITDE---CLVHLKGLTNL 304
G + S++ L L++G N+I DE + +K LT+L
Sbjct: 244 GAKYISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
>gi|390335362|ref|XP_003724129.1| PREDICTED: uncharacterized protein LOC100890653 [Strongylocentrotus
purpuratus]
Length = 990
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 146/297 (49%), Gaps = 25/297 (8%)
Query: 223 HVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIGSL 280
H+ L+SL NL CP +T L +++L L +LNL N L+D + + SL
Sbjct: 642 HIHLSSL------NLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSL 695
Query: 281 KVLNLGFNEITD---ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
L L +TD E V + NL +L+L+ + D ++ L L LK L L TQ
Sbjct: 696 TTLLLEGTGVTDAGLETFVAVPP-PNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLEQTQ 754
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
V S L H+ L+ L S+N+S + +L KL ++ LK L++ + TG ALT L
Sbjct: 755 VKS--LEHVGHLSQLVSLNVSRNRLQRDALLKLHQVTHLKVLHISHVEGI-TGDEALTCL 811
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG------GGLTDAGVKHIKDLSSLTLL 451
GL + L + D K + + +C +TDAG+ H+ D++SL L
Sbjct: 812 QGLQLMQL---SLPDRHTTTDNGLKCIAGMSLCSIDLTDYSNITDAGIHHLADMTSLHKL 868
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+++ N +T ++ +SGLT L+ L++ + + G + + L L+ L++ K+T
Sbjct: 869 SIT-NTKVTSAGMQYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKIT 924
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 153/317 (48%), Gaps = 31/317 (9%)
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
I+L L+L C I GL+ + L KL+ LN+ +TD + + ++L +L +
Sbjct: 643 IHLSSLNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSLTTLLLEG 702
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS 249
+ VTD+G+ + ++ + + +FL L KL L LE V + L+
Sbjct: 703 TGVTDAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLEQTQVKS--LEH 760
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-IT-DECLVHLKGLTNLE-- 305
+ L L LN++R +L D K ++ LKVL++ E IT DE L L+GL ++
Sbjct: 761 VGHLSQLVSLNVSRNRLQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGLQLMQLS 820
Query: 306 ---------------------SLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
S++L D I D G+ +L + +L L +++T+V S+G+
Sbjct: 821 LPDRHTTTDNGLKCIAGMSLCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTSAGM 880
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA--LTSLTGLT 401
++LSGLT L ++L T + D + + L+ L+ L++ +ITD L + + S ++
Sbjct: 881 QYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCPHIS 940
Query: 402 HLDLFGARITDSGAAYL 418
L+L I++ G L
Sbjct: 941 RLNLSRTNISERGITVL 957
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 171/400 (42%), Gaps = 61/400 (15%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++++ EL S L +L F C LQ L L Y ++ + + L S
Sbjct: 589 VPPTVAERLLTELKKSGHLRPKTLMMFIPCHLQRLALDCYKYTTNELLQTVRPH-IHLSS 647
Query: 62 VDLSGSD-VTDSGLIHLKDCSNLQSLDFN----------FCIQ--------------ISD 96
++L+ +TD GL+ + LQ L+ + +Q ++D
Sbjct: 648 LNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSLTTLLLEGTGVTD 707
Query: 97 GGLEHLRGL--SNLTSLSFRRNNA---------------------ITAQGMKAFAGLINL 133
GLE + NLT+LS R N + ++ L L
Sbjct: 708 AGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLEQTQVKSLEHVGHLSQL 767
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS--- 190
V L++ R L+ L + L+ L+I IT + L+ L L+ +Q+S
Sbjct: 768 VSLNVSRNRLQRDALLKLHQVTHLKVLHISHVEGITGDEA--LTCLQGLQLMQLSLPDRH 825
Query: 191 KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQKLTLLNLEGCPVTAACLDS 249
TD+G+ + G+S+ S+ S I H+ +TSL KL++ N + VT+A +
Sbjct: 826 TTTDNGLKCIAGMSLCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTK---VTSAGMQY 882
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLTNLESL 307
LS L L L+L+R + D+G + ++ L+VL++ +ITD L+ + ++ L
Sbjct: 883 LSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCPHISRL 942
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
NL I + G+ L+ L L L L T V +HL+
Sbjct: 943 NLSRTNISERGITVLS-LPYLTLLNLDYTCVSVDCAQHLT 981
>gi|386333502|ref|YP_006029672.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334195951|gb|AEG69136.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 535
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 128/271 (47%), Gaps = 1/271 (0%)
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ LT L+L + A L A L LN+NR ++ G + +L L++G N
Sbjct: 238 KTLTSLDLSENGLGDAEAQRLGASERLTMLNVNRNRIDVPGARALAACKTLTSLDIGGNS 297
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
I D + L T L +LN++ G+G G+ L L L + + +G G + L+
Sbjct: 298 IGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAAS 357
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
T+L +++ GI + LA + L +LNL + D G A + T L L +
Sbjct: 358 TSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTKLVSLSVRRNG 417
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
++D+GA L K L +L++ + D G + +LT LNLS N + + ++
Sbjct: 418 LSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNLSSN-EIGNAGARALAA 476
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
T L SL++ N+R+ AG+R L + L SL
Sbjct: 477 NTRLASLDLRNNRMLEAGVRALLVNRTLSSL 507
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 115/431 (26%), Positives = 187/431 (43%), Gaps = 33/431 (7%)
Query: 114 RRNNAITAQGMKAFAGLINL-VKLDLERCTRIH-GGLVNLKGLMKLESLN-IKWCNCITD 170
RR+ +T Q ++A + + V+ D+ + + GL K +L + TD
Sbjct: 72 RRSPPVTVQRLRAVSRSVKATVEADIRQLVVTNRAGLAGAKRAGNYPALEKLTLAGPFTD 131
Query: 171 SDMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLSISSVIFI---LCSMIIRLFCLH 223
+D+ L LK L +S + +T +GIA+L L + + + ++ RL H
Sbjct: 132 ADLAGLP--PTLKELDLSRDRGRGFITAAGIAHLSRLPLVRLNLSGNRIGTVEARLLANH 189
Query: 224 VFLTSLQ------------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
LT L +LT LN V + +L +L L+L+
Sbjct: 190 PTLTELDVSRCGIGPEEARALAASARLTTLNASRNGVGGEGVRALVDCKTLTSLDLSENG 249
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
L D ++ L +LN+ N I L L SL++ IGD G+ L
Sbjct: 250 LGDAEAQRLGASERLTMLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDAGVEALLAH 309
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L + VG+ G+R L+ L S+ + I D + LA +SL +L+ ++
Sbjct: 310 TQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAASTSLTALHSESNG 369
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
I G AL + T LT L+L + D+GA A+L N K L SL + GL+DAG +
Sbjct: 370 IGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLANTK-LVSLSVRRNGLSDAGAIRLAA 428
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+LT L++ N + D + L +LN+S++ I +AG R L L SL L +
Sbjct: 429 SKTLTTLDVGDNA-IKDTGARAFAANRTLTTLNLSSNEIGNAGARALAANTRLASLDLRN 487
Query: 505 CKVTANDIKRL 515
++ ++ L
Sbjct: 488 NRMLEAGVRAL 498
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 110/232 (47%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L + + LT L++ G + A +++L A L LN+ R + G + +L L +
Sbjct: 282 LAACKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLTSLRI 341
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N I DE L T+L +L+ +S GIG G L L L L VG +G +
Sbjct: 342 DNNNIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQA 401
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
T L S+++ G+SD +LA +L +L++ I DTG A + LT L+L
Sbjct: 402 WLANTKLVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNL 461
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 462 SSNEIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 513
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 127/299 (42%), Gaps = 5/299 (1%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+++ S + V G+ L DC L SLD + + D + L LT L+ RN I
Sbjct: 218 TLNASRNGVGGEGVRALVDCKTLTSLDLSEN-GLGDAEAQRLGASERLTMLNVNRNR-ID 275
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G +A A L LD+ + G+ L +L +LN++ + ++ L+
Sbjct: 276 VPGARALAACKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAG-VGAHGVRALADCK 334
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
L SL+I + + D G L + + + + I + ++ LT LNL
Sbjct: 335 TLTSLRIDNNNIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTM--LTTLNLGHN 392
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
V A + A L L++ R LSD G + + +L L++G N I D
Sbjct: 393 SVGDAGAQAWLANTKLVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAA 452
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
L +LNL S IG+ G L L L+L + ++ +G+R L L S+ +SF
Sbjct: 453 NRTLTTLNLSSNEIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSF 511
>gi|320170955|gb|EFW47854.1| hypothetical protein CAOG_05792 [Capsaspora owczarzaki ATCC 30864]
Length = 727
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 178/420 (42%), Gaps = 34/420 (8%)
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGL 148
+ S G L + G+ T+ + +N IT+ AF GL + + LD T I
Sbjct: 28 VTCSGGSLTAIPSGIPTDTTKLYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADA 87
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
GL L L++ + N IT +G+T L L +S +++T L+
Sbjct: 88 --FTGLTALTYLSL-YANPITSIPAGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRS 144
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
+F+ ++I + + F TSL LT L+L G +T+ ++ + L +L L+L ++
Sbjct: 145 LFLYANLITSI-SANAF-TSLTALTYLHLYGNQITSIS-NAFTGLTALTELHLYNNHITS 201
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
F+ + +L L+L N+IT GLT L L L+S I TGL L
Sbjct: 202 ISANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSNQITSIPADTFTGLTAL 261
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L+ + S + LT L ++ + I+ S AGL++L L + IT
Sbjct: 262 TYLSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAGLTALTYLFFSSNLITS 321
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
A LT LT+L L +IT I G T GV ++L
Sbjct: 322 ISANAFAGLTALTYLSLGSNQIT----------------SIPAGTFT--GV------TAL 357
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
T L+L N +T + +GLT L L + ++ITS L L L L+S +T
Sbjct: 358 TYLSLDSN-QITSIPADTFTGLTALTYLYLGTNQITSLPSSSFTNLTALTYLVLQSNPIT 416
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 124/286 (43%), Gaps = 6/286 (2%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
T L LT L+L P+T+ + + + +L YL+L+ Q++ F+ + +L+ L L
Sbjct: 88 FTGLTALTYLSLYANPITSIPAGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRSLFL 147
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGL 343
N IT LT L L+L I LT L L T + ++
Sbjct: 148 YANLITSISANAFTSLTALTYLHLYGNQITSISNAFTGLTALTELHLYNNHITSISANAF 207
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L+ LT L I+ T I + GL++L L L++ QIT T LT LT+L
Sbjct: 208 TDLTALTELSLISNQITSIPADTFT---GLTALTYLYLNSNQITSIPADTFTGLTALTYL 264
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
L IT A + L L +T L++LT L S N +T +
Sbjct: 265 SLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAGLTALTYLFFSSNL-ITSIS 323
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+GLT L L++ +++ITS + L L+L+S ++T+
Sbjct: 324 ANAFAGLTALTYLSLGSNQITSIPAGTFTGVTALTYLSLDSNQITS 369
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 2/179 (1%)
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L ++ + S +GLT L ++L + I+ GL++L L+L A IT
Sbjct: 49 LYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIP 108
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
T +T LT+L L +IT A + LRSL + +T L++LT
Sbjct: 109 AGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTY 168
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L+L N +T + +GLT L L++ N+ ITS L L L+L S ++T+
Sbjct: 169 LHLYGN-QITSIS-NAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITS 225
>gi|255524523|ref|ZP_05391478.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|296186022|ref|ZP_06854427.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255511819|gb|EET88104.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|296049290|gb|EFG88719.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 683
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 164/330 (49%), Gaps = 37/330 (11%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
Q + L NL LDL + ++I + LK L KL++L N SD+ PL LT+
Sbjct: 371 QDISGIENLTNLQFLDLSQ-SKI-SDISELKNLTKLQTL---LLNDNEISDISPLQNLTD 425
Query: 182 LKSLQISCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL-NLEG 239
LK L + ++++D + + YL L+ L+ + +T++ KL L NL+
Sbjct: 426 LKQLDLEENRISDITPLQYLSDLN-------------ELYLKNNRITNISKLEWLTNLKI 472
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG---FNEITDEC-L 295
++ + S + +Y NL + I + K NL ++I E
Sbjct: 473 LYLSQNQISDYSPVKR-YYDNLTDKDFNMTNSTDSKDIVTFKDENLEKAVRDKINKETGD 531
Query: 296 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
+++ + N+ SLN I D G+ NLT L + L+L + QV S + LS LTNLE+
Sbjct: 532 IYITDVKNIVSLNASHKNIKDISGIENLTSL---QTLDLGNNQV--SDISVLSSLTNLET 586
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+NLS+ SD + KL GLS L++LNL++ +I D ++A+ +L L L+L +I S
Sbjct: 587 LNLSYNEFSD--ISKLKGLSKLETLNLNSNEIGD--ISAIQTLNNLKSLNLSNCKI--SN 640
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
L+ NL++L + ++D+ + +KD
Sbjct: 641 INPLKGLNNLKTLWLNNNEMSDSDKEALKD 670
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 112/440 (25%), Positives = 190/440 (43%), Gaps = 70/440 (15%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI-------------NLV---KLDLER 140
+ LRGL+NL L +N + +++ I N+V ++LE+
Sbjct: 280 NNINALRGLTNLNLLYLGQNEILDYSPTRSYYAKILNKDFDLIDSNDDNIVTFKDINLEK 339
Query: 141 CTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
R G + + K+ SL N D+ + LTNL+ L +S SK++D
Sbjct: 340 AVRSEINKPSGDIYKSDVEKIVSLQPYHENI---QDISGIENLTNLQFLDLSQSKISD-- 394
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
I+ LK L+ + + + I + L LT L++L L +T L LS L L
Sbjct: 395 ISELKNLTKLQTLLLNDNEISDISPLQ-NLTDLKQLDLEENRISDITP--LQYLSDLNEL 451
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
YL NR K + +LK+L L N+I+D V + NL + + D
Sbjct: 452 -YLKNNRIT----NISKLEWLTNLKILYLSQNQISDYSPVK-RYYDNLTDKDFNMTNSTD 505
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
+ NL+ + D +G +++ + N+ S+N S I D + + L+SL
Sbjct: 506 SKDIVTFKDENLEK-AVRDKINKETGDIYITDVKNIVSLNASHKNIKD--ISGIENLTSL 562
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
++L+L Q++D ++ L+SLT L L+L +D + K L LE +
Sbjct: 563 QTLDLGNNQVSD--ISVLSSLTNLETLNLSYNEFSD-----ISKLKGLSKLETLNLNSNE 615
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
G D+S++ LN L SLN+SN +I + + LK L N
Sbjct: 616 IG-----DISAIQTLN-------------------NLKSLNLSNCKI--SNINPLKGLNN 649
Query: 497 LRSLTLESCKVTANDIKRLQ 516
L++L L + +++ +D + L+
Sbjct: 650 LKTLWLNNNEMSDSDKEALK 669
>gi|417302467|ref|ZP_12089567.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327541207|gb|EGF27751.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 341
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 2/219 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L L L + G A S+S L +L + ++DDG +++ L+ ++L
Sbjct: 113 LAALPNLKRLRVYGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSL 172
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+ +TD+ L + L L LNL I E ++ L L+ LEL++T G G+
Sbjct: 173 MNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPA 231
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 404
++ + LE INL T I + SL+ G +SL LN+D IT+ + + SL L L
Sbjct: 232 IANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPHLKLLH 291
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
L ++ L+ + L +L + GL + K ++
Sbjct: 292 LGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELE 330
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 5/229 (2%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L+
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
+ ++ S + + ++L KLT LNL G +T + +S L L L L
Sbjct: 167 LQDVSLMNSPVTDKTLASI--STLPKLTKLNLRGTKITGEAFEPISKL-PLESLELAETD 223
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
+G + I L+ +NL +I +E L +G T+L LN+D+C I +E + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIIS 283
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
L +LK L L T V L L L LE++ ++ G+ + ++L +
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKELEAM 332
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)
Query: 256 LFYLNLNRCQLSD-DGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+ ++L SD DG K S ++ L + +D ++ L L NL+ L +
Sbjct: 69 VVVVDLREVAESDLDGAVKLLSNTSTVSELFMPAAAWSDGTVLRLAALPNLKRLRVYGKA 128
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
D +++GL L + DT V G L+ L L+ ++L + ++D +L ++ L
Sbjct: 129 FDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTL 188
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L LNL +IT ++ L L L+L G + N + L + +
Sbjct: 189 PKLTKLNLRGTKITGEAFEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTK 247
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+ + +K + +SLT+LN+ +T++ + +I L L L++ + ++ L LKP
Sbjct: 248 IDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKP 307
Query: 494 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
L+ L +L + + + K L++ PNL F
Sbjct: 308 LQELETLFVTNLGLEEEPAKELEAM-FPNLKRFE 340
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 3/153 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V L S VTD L + L L+ +I+ E + L L SL +
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISKLP-LESLELAETD- 223
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+GM A A + L K++L + L +G L LN+ C IT+ + +
Sbjct: 224 FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDNCPAITEEAIPVIIS 283
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
L +LK L + + V+ + LK L +F+
Sbjct: 284 LPHLKLLHLGKTSVSPDALPQLKPLQELETLFV 316
>gi|290981770|ref|XP_002673604.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
gi|284087189|gb|EFC40860.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
Length = 494
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 116/234 (49%), Gaps = 3/234 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ L +LT LN+ V + + L YL+++ +SD+G + S++ L LN+
Sbjct: 221 ISQLHQLTCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNV 280
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
I E ++ LT L +L EG + + L L++S +G++G+++
Sbjct: 281 NCTIIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKY 340
Query: 346 LSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
LS + L +N++ I+ + + LS L L++ + I G+ A+++++ L
Sbjct: 341 LSKMKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQLRT 400
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L++F RI +GA + +NL L+IC + G K I + LT L++++N
Sbjct: 401 LNIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARN 454
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 155/380 (40%), Gaps = 66/380 (17%)
Query: 37 CLGQYPGVNDKWMD-----VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
CL Q+ +N + + I + L +D+ S + G + + +L SLD N
Sbjct: 147 CLEQFESMNVRGISRLQFYKIFEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNM 206
Query: 92 IQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
+ + LE + L LT L+ NN G F + N+ +L
Sbjct: 207 VFMEKESKLELLESISQLHQLTCLNISSNNV----GFNTFKPIGNVKQLTY--------- 253
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
L++ W N I+D K LS L+ L L ++C+ + G Y
Sbjct: 254 ------------LDVSW-NYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKY-------- 292
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
I +L L + + + EGC S + L L+++ +
Sbjct: 293 --------ISKLTKLRTLIAARNNFWI---EGCQY-------FSEMEQLTALDVSHNSIG 334
Query: 268 DDGCEKFSKIGSLKVLNLGFNEI----TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
+ G + SK+ L LN+ N I T+E + ++ L+ L L++ S IG EG+ ++
Sbjct: 335 NTGIKYLSKMKQLTELNINDNAINQFGTEESKL-IRELSQLTKLSISSNNIGIEGVTAIS 393
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
+ L+ L + ++G +G + +SG+ NL +++ I ++++ + L L++
Sbjct: 394 TMSQLRTLNIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIAR 453
Query: 384 RQITDTGLAALTSLTGLTHL 403
I + G AL S+ L L
Sbjct: 454 NMIGNEGAKALKSMKQLKSL 473
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 119/261 (45%), Gaps = 33/261 (12%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-----EGLVNLTGLCNL 328
F K L L++G + I E + L +L SL++++ + E L +++ L L
Sbjct: 168 FEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQL 227
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
CL +S VG + + + + L +++S+ ISD + L+ LS L LN++ I
Sbjct: 228 TCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGI 287
Query: 389 TGLAALTSLTGL------------------------THLDLFGARITDSGAAYLRNFKNL 424
G ++ LT L T LD+ I ++G YL K L
Sbjct: 288 EGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQL 347
Query: 425 RSLEICGGGLTDAGVKH---IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
L I + G + I++LS LT L++S N N+ + + IS ++ L +LN+ +
Sbjct: 348 TELNINDNAINQFGTEESKLIRELSQLTKLSISSN-NIGIEGVTAISTMSQLRTLNIFFN 406
Query: 482 RITSAGLRHLKPLKNLRSLTL 502
RI AG + + ++NL L +
Sbjct: 407 RIGLAGAKLISGMQNLTVLDI 427
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 13/229 (5%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
++++LT L++ ++ LS L L +LN+N + +G + SK+ L+ L
Sbjct: 247 NVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKYISKLTKLRTLIAAR 306
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG----- 342
N E + + L +L++ IG+ G+ L+ + L L ++D + G
Sbjct: 307 NNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNINDNAINQFGTEESK 366
Query: 343 -LRHLSGLTNLE--SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
+R LS LT L S N+ G++ ++ +S L++LN+ +I G ++ +
Sbjct: 367 LIRELSQLTKLSISSNNIGIEGVT-----AISTMSQLRTLNIFFNRIGLAGAKLISGMQN 421
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
LT LD+ I +GA + K L L+I + + G K +K + L
Sbjct: 422 LTVLDICNNDIGTNGAKEISKMKQLTKLDIARNMIGNEGAKALKSMKQL 470
>gi|290971663|ref|XP_002668605.1| predicted protein [Naegleria gruberi]
gi|284082078|gb|EFC35861.1| predicted protein [Naegleria gruberi]
Length = 968
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 1/189 (0%)
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
IG EG +++ + L L++ + Q+G G + +S + L S+ +S I D ++ + +
Sbjct: 773 IGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKM 832
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L S N+ + G ++ + LT LD+ I D GA + K L SL I G
Sbjct: 833 KQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNS 892
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+ G K I ++ LTLL++ +N + D+ + IS L L SL +S ++I G + +
Sbjct: 893 IGVEGAKSISEMKQLTLLDIGEN-QIGDEGAKSISELKQLKSLTISENQIGDEGAKFIIG 951
Query: 494 LKNLRSLTL 502
+K S L
Sbjct: 952 MKQYGSFKL 960
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 87/174 (50%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G + S++ L L++G N+I DE + + L SL + IGDEG+ ++ + L
Sbjct: 776 EGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQL 835
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
+S + G +G + +S + L S+++S+ I D + ++ L L SL + I
Sbjct: 836 TSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGV 895
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
G +++ + LT LD+ +I D GA + K L+SL I + D G K I
Sbjct: 896 EGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEGAKFI 949
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SL++ IGDEG +++ + L L +S +G G++ + + L S N+S+
Sbjct: 784 MKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN 843
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+ ++ + L SL++ +I D G +++ L LT L + G I GA +
Sbjct: 844 ETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAKSISE 903
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
K L L+I + D G K I +L L L +S+N + D+ + I G+
Sbjct: 904 MKQLTLLDIGENQIGDEGAKSISELKQLKSLTISEN-QIGDEGAKFIIGM 952
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 1/176 (0%)
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
E + +G G + +S + L S+++ I D + ++ + L SL + I D G+
Sbjct: 767 EEMEHSIGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGV 826
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
++ + LT ++ +GA ++ K L SL+I + D G K I +L LT L
Sbjct: 827 KSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSL 886
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+S N ++ + + IS + L L++ ++I G + + LK L+SLT+ ++
Sbjct: 887 TISGN-SIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQI 941
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 28/231 (12%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F+ LI+ K ++E + G ++ + +L SL+I N I D K +S + L SL
Sbjct: 758 FSKLISEEKEEMEHSIGVEGA-KSISEMKQLTSLDIG-ENQIGDEGAKSISEMKQLTSLT 815
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
IS + + D G+ ++ +++LT N+ A
Sbjct: 816 ISGNSIGDEGVKSIR--------------------------KMKQLTSFNISYNETGVAG 849
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
+S + L L+++ ++ D+G + S++ L L + N I E + + L
Sbjct: 850 AKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAKSISEMKQLTL 909
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L++ IGDEG +++ L LK L +S+ Q+G G + + G+ S L
Sbjct: 910 LDIGENQIGDEGAKSISELKQLKSLTISENQIGDEGAKFIIGMKQYGSFKL 960
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 78/165 (47%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ +++LT L++ + S+S + L L ++ + D+G + K+ L N+
Sbjct: 781 ISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNI 840
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+NE + + L SL++ IGDEG +++ L L L +S +G G +
Sbjct: 841 SYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAKS 900
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
+S + L +++ I D + ++ L LKSL + QI D G
Sbjct: 901 ISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEG 945
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ +SG+ + D G+ ++ L S + ++ + G + + + LTSL
Sbjct: 806 SEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN-ETGVAGAKFISEMKQLTSLDI 864
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + L L L + + G ++ + +L L+I N I D
Sbjct: 865 SYNE-IGDEGAKSISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIG-ENQIGDEGA 922
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
K +S L LKSL IS +++ D G ++ G+
Sbjct: 923 KSISELKQLKSLTISENQIGDEGAKFIIGM 952
>gi|158299381|ref|XP_319486.4| AGAP010289-PA [Anopheles gambiae str. PEST]
gi|157014337|gb|EAA14603.5| AGAP010289-PA [Anopheles gambiae str. PEST]
Length = 381
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 26/244 (10%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG----------SLKVLNLGF-NEITDECLVH 297
S + GSL + R Q+ GC + + +LKVLNL ++TD L
Sbjct: 124 SPTLFGSLVKRGIKRVQV---GCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGR 180
Query: 298 L-KGLTNLESLNLDSCG-IGDEGLVNLT--GLCNLKCLELSDTQ-VGSSGLRHLS-GLTN 351
+ + L N+E L L C I + GL T G L+ L L D Q + LRH++ GLT+
Sbjct: 181 ITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTS 240
Query: 352 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FG 407
L SINLSF ++D L+ LA +S L+ LNL A I+D G+A LT ++ LD+ F
Sbjct: 241 LRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFC 300
Query: 408 ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 465
++ D ++ + LRSL + +TD G+ I K L L LN+ Q +TD+ LE
Sbjct: 301 DKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLE 360
Query: 466 LISG 469
+++
Sbjct: 361 IVAA 364
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 132/269 (49%), Gaps = 47/269 (17%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT-------L 234
+K +Q+ C +TD I + ++ + S+ C V +SL ++T +
Sbjct: 136 IKRVQVGCYNITDMAIGHAFAADFPNLKVLNLSL-----CKQVTDSSLGRITQHLKNIEV 190
Query: 235 LNLEGCP-VTAACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-N 288
L L GC +T L +A G +L YL L CQ LSD+ ++ + SL+ +NL F
Sbjct: 191 LELGGCSNITNTGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFCV 250
Query: 289 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+TD L HL ++ LE LNL +C I D G+ LT CN
Sbjct: 251 SVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCN-------------------- 290
Query: 348 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLD 404
++ ++++SF ++D ++ ++ GL L+SL+L A QITD GL+ + SL L L+
Sbjct: 291 ---SISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLN 347
Query: 405 LFG-ARITDSGAAYL-RNFKNLRSLEICG 431
+ +RITD G + NLR++++ G
Sbjct: 348 IGQCSRITDRGLEIVAAELINLRAIDLYG 376
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 127/273 (46%), Gaps = 56/273 (20%)
Query: 62 VDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSN 107
V + ++TD + H D NL+ L+ + C Q++D L +HL+ G SN
Sbjct: 139 VQVGCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSN 198
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWC 165
+T+ + TA G A L L L+ C R+ + +GL L S+N+ +C
Sbjct: 199 ITNTGLSKE---TADGTPA------LEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFC 249
Query: 166 NCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGL-SISSVIFILCSMIIRLFCL 222
+TDS +K L+ ++ L+ L + +C ++D G+AYL +G SIS++ C + +
Sbjct: 250 VSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMV 309
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLK 281
H+ L L L+L+ CQ++D+G + +K + L+
Sbjct: 310 HIS-------------------------QGLFQLRSLSLSACQITDEGLSRIAKSLHDLE 344
Query: 282 VLNLGF-NEITDECL-VHLKGLTNLESLNLDSC 312
LN+G + ITD L + L NL +++L C
Sbjct: 345 TLNIGQCSRITDRGLEIVAAELINLRAIDLYGC 377
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
AL+ L L ++D+ + IA +SL S++LS VTDSGL HL S L+ L+
Sbjct: 214 ALEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRA 273
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGL 148
C ISD G+ +L G +++++L + + Q M + GL L L L C GL
Sbjct: 274 CDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSACQITDEGL 333
Query: 149 VNL-KGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQI-SCSKVT 193
+ K L LE+LNI C+ ITD ++ ++ L NL+++ + C+++T
Sbjct: 334 SRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLYGCTRLT 381
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 18/199 (9%)
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-RQI 386
C ++D +G + + NL+ +NLS ++D SL ++ L +++ L L I
Sbjct: 143 CYNITDMAIGHA---FAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNI 199
Query: 387 TDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGV 439
T+TGL+ T+ G L+ G R++D ++ + +LRS L C +TD+G+
Sbjct: 200 TNTGLSKETA-DGTPALEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFCVS-VTDSGL 257
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKN 496
KH+ +S L LNL N++D + L G + +L+VS ++ + H+ + L
Sbjct: 258 KHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQ 317
Query: 497 LRSLTLESCKVTANDIKRL 515
LRSL+L +C++T + R+
Sbjct: 318 LRSLSLSACQITDEGLSRI 336
>gi|195150157|ref|XP_002016021.1| GL10712 [Drosophila persimilis]
gi|194109868|gb|EDW31911.1| GL10712 [Drosophila persimilis]
Length = 529
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 169/397 (42%), Gaps = 112/397 (28%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R AL+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-ALKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNT 294
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 295 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEA 354
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G
Sbjct: 355 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 414
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
I+S+ C I S Q LT + L L L+LN+
Sbjct: 415 GINSLDVSFCDKI-----------SDQALTHIA--------------QGLYRLRSLSLNQ 449
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL 322
CQ++D G K + K L LE+LN+ C I D+GL L
Sbjct: 450 CQITDQGMVKIA-----------------------KSLQELENLNIGQCSRITDKGLQTL 486
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 487 AEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 19/222 (8%)
Query: 300 GLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-G 348
GL L LNL SC I D+G+ +L G L+ L L D Q + L H++ G
Sbjct: 302 GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQG 361
Query: 349 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL 405
LT+L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+
Sbjct: 362 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 421
Query: 406 -FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK 462
F +I+D ++ + LRSL + +TD G VK K L L LN+ Q +TDK
Sbjct: 422 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDK 481
Query: 463 TLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 482 GLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 281
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-------- 398
NLE N++ TG+ L GL L+ LNL + I+D G+ L +
Sbjct: 282 NLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 337
Query: 399 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L HL L R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 338 QLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 396
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 397 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453
>gi|320168280|gb|EFW45179.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 769
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 174/423 (41%), Gaps = 18/423 (4%)
Query: 103 RGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLE 158
+ LT+L R NN IT AFAGL L LDL+ + T I GL L+
Sbjct: 74 NAFATLTALESLRLYNNQITGLSANAFAGLSALTLLDLKGNQITTIPENA--FTGLASLQ 131
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI----LCS 214
L + + N IT +GL+ L L + + + + GL+ + + + L S
Sbjct: 132 QLWL-YTNQITSISANAFAGLSALTQLWMYSNPLPNITANAFAGLTALNSMQLDRNQLTS 190
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
++ F + LT L L+ +T+ + + L +L YLN+ + ++ F
Sbjct: 191 IVANAFA------GMPALTDLELQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSF 244
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+ + +L L L N IT GLT L SL L S I T L L L L
Sbjct: 245 TGLSALNELYLSQNSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQ 304
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ S + L L S+ L I+ S L +L +L+L +IT + A
Sbjct: 305 SNSITSISSNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAF 364
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
T+L GLT L L+ +IT A L SL++ G +T I L++L L L+
Sbjct: 365 TNLPGLTDLKLYANKITTIFANAFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLN 424
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+N +T+ + LT L L + +++ S L L L L +T +
Sbjct: 425 EN-QITNIPANAFASLTALTGLFLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNA 483
Query: 515 LQS 517
+
Sbjct: 484 FTA 486
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 172/384 (44%), Gaps = 29/384 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ L S+ RN +T+ AFAG+ L L+L+ GL L LN
Sbjct: 172 FAGLTALNSMQLDRNQ-LTSIVANAFAGMPALTDLELQNNAITSISPSAFAGLTALTYLN 230
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
+ N IT +GL+ L L +S + +T GL+ S +++ + I +
Sbjct: 231 MVQ-NHITGISANSFTGLSALNELYLSQNSITVISSNAFNGLTALSSLYLPSNQITSI-S 288
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+VF T+L L+ L L+ +T+ ++ + L +L L L ++ F+ + +L
Sbjct: 289 ANVF-TNLPALSSLRLQSNSITSISSNAFTNLPALSSLRLKSNSITSISSNAFTNLPALS 347
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L+L NEIT ++ + TNL GL +LK L ++ +
Sbjct: 348 ALDLSDNEIT---VIPVNAFTNLP------------------GLTDLK---LYANKITTI 383
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
SGL+ L+S++LS I+ +A L++L L L+ QIT+ A SLT LT
Sbjct: 384 FANAFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNENQITNIPANAFASLTALT 443
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L L ++ A L L++ +T V L++LT L LS N +T
Sbjct: 444 GLFLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTALTALTSLYLSLN-QITT 502
Query: 462 KTLELISGLTGLVSLNVSNSRITS 485
+ + + LT L L++S ++ITS
Sbjct: 503 ISANVFASLTALNYLDLSANQITS 526
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 112/257 (43%), Gaps = 3/257 (1%)
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
F+ + +L+ L L N+IT GL+ L L+L I TGL +L+
Sbjct: 73 ANAFATLTALESLRLYNNQITGLSANAFAGLSALTLLDLKGNQITTIPENAFTGLASLQQ 132
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L Q+ S +GL+ L + + + + + AGL++L S+ LD Q+T
Sbjct: 133 LWLYTNQITSISANAFAGLSALTQLWMYSNPLPNITANAFAGLTALNSMQLDRNQLTSIV 192
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
A + LT L+L IT + L L + +T LS+L
Sbjct: 193 ANAFAGMPALTDLELQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFTGLSALNE 252
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
L LSQN ++T + +GLT L SL + +++ITS L L SL L+S +T+
Sbjct: 253 LYLSQN-SITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSI 311
Query: 511 DIKRLQSRDLPNLVSFR 527
+LP L S R
Sbjct: 312 SSNAF--TNLPALSSLR 326
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 102/243 (41%), Gaps = 3/243 (1%)
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L N IT LT LESL L + I GL L L+L Q+ +
Sbjct: 63 LSSNPITSIPANAFATLTALESLRLYNNQITGLSANAFAGLSALTLLDLKGNQITTIPEN 122
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+GL +L+ + L I+ S AGLS+L L + + + + A LT L +
Sbjct: 123 AFTGLASLQQLWLYTNQITSISANAFAGLSALTQLWMYSNPLPNITANAFAGLTALNSMQ 182
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L ++T A L LE+ +T L++LT LN+ QN ++T +
Sbjct: 183 LDRNQLTSIVANAFAGMPALTDLELQNNAITSISPSAFAGLTALTYLNMVQN-HITGISA 241
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
+GL+ L L +S + IT L L SL L S ++T+ I +LP L
Sbjct: 242 NSFTGLSALNELYLSQNSITVISSNAFNGLTALSSLYLPSNQITS--ISANVFTNLPALS 299
Query: 525 SFR 527
S R
Sbjct: 300 SLR 302
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 142/342 (41%), Gaps = 27/342 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 160
G+ LT L + NNAIT+ AFAGL L L++ + I G N GL L L
Sbjct: 196 FAGMPALTDLELQ-NNAITSISPSAFAGLTALTYLNMVQ-NHITGISANSFTGLSALNEL 253
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLSISSV----------- 208
+ N IT +GLT L SL + +++T S + ++SS+
Sbjct: 254 YLSQ-NSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSIS 312
Query: 209 ------IFILCSMIIRLFCLHVF----LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
+ L S+ ++ + T+L L+ L+L +T +++ + L L
Sbjct: 313 SNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTD 372
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L L +++ FS + L L+L N IT + LT L L L+ I +
Sbjct: 373 LKLYANKITTIFANAFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNENQITNIP 432
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L L L L Q+ S +GLT L ++L I+ + L++L S
Sbjct: 433 ANAFASLTALTGLFLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTALTALTS 492
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLR 419
L L QIT SLT L +LDL +IT +A+ R
Sbjct: 493 LYLSLNQITTISANVFASLTALNYLDLSANQITSIEASAFTR 534
>gi|290989491|ref|XP_002677371.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
gi|284090978|gb|EFC44627.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
Length = 350
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 21/279 (7%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L +LT LN++ + +DS+ L L L++N L + ++ L VL++
Sbjct: 90 LGNLHQLTDLNVDDSFIVEPAIDSIRYLTKLSTLSINSNNLKTKELKIIKEMKQLTVLSI 149
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N + L+ L+NL LN+ + IG+EG L + L L +S T + S G+ +
Sbjct: 150 AKNSMQSGGAKLLRNLSNLTILNISNNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISY 209
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+ NL +N F+G + SLR Q L+ L LT L +
Sbjct: 210 LTNFPNLTELN--FSG--NTSLR--------------FSQKVQEQLSELKYLTKLVINYI 251
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
I D Y+ + L SL + + DA HI LT L+++ N NL+D E
Sbjct: 252 HPIPIDD--LQYIHKLEKLTSLSLKSNFMYDASAIHISKCEKLTYLDVAIN-NLSDAAAE 308
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
S L L LN+S + ++ G+ L+ + L SL ES
Sbjct: 309 AFSHLPNLKYLNISENYLSKKGVELLRNMPQLTSLIYES 347
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 123/282 (43%), Gaps = 29/282 (10%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G +L +DL + + HL + L L+ + I + ++ +R L+ L++LS
Sbjct: 69 GRNLTKLDLRRNFIHAKLAEHLGNLHQLTDLNVDDSF-IVEPAIDSIRYLTKLSTLSINS 127
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN T + +K + L L + + + GG L+ L L LNI N I + K
Sbjct: 128 NNLKTKE-LKIIKEMKQLTVLSIAKNSMQSGGAKLLRNLSNLTILNIS-NNRIGNEGWKY 185
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLS----------------------ISSVIFILC 213
L + L L IS + ++ GI+YL +S + ++
Sbjct: 186 LCSMKQLTKLNISGTNISSEGISYLTNFPNLTELNFSGNTSLRFSQKVQEQLSELKYLTK 245
Query: 214 SMIIRLFCLHV----FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
+I + + + ++ L+KLT L+L+ + A +S L YL++ LSD
Sbjct: 246 LVINYIHPIPIDDLQYIHKLEKLTSLSLKSNFMYDASAIHISKCEKLTYLDVAINNLSDA 305
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
E FS + +LK LN+ N ++ + + L+ + L SL +S
Sbjct: 306 AAEAFSHLPNLKYLNISENYLSKKGVELLRNMPQLTSLIYES 347
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 384 RQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
R LA L +L LT L++ + I + +R L +L I L +K I
Sbjct: 79 RNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSIRYLTKLSTLSINSNNLKTKELKII 138
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
K++ LT+L++++N + +L+ L+ L LN+SN+RI + G ++L +K L L +
Sbjct: 139 KEMKQLTVLSIAKNS-MQSGGAKLLRNLSNLTILNISNNRIGNEGWKYLCSMKQLTKLNI 197
Query: 503 ESCKVTANDIKRLQSRDLPNL 523
+++ I L + PNL
Sbjct: 198 SGTNISSEGISYLT--NFPNL 216
>gi|119485475|ref|ZP_01619803.1| Rab family protein [Lyngbya sp. PCC 8106]
gi|119457231|gb|EAW38357.1| Rab family protein [Lyngbya sp. PCC 8106]
Length = 457
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 201/384 (52%), Gaps = 37/384 (9%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L+ +++LDL R ++I L L L L LN+ N ITD + PLS LTNL L
Sbjct: 94 AQKSLLQVIELDLSR-SKI-SDLSPLITLPHLTRLNLSE-NQITD--LTPLSNLTNLTRL 148
Query: 186 QISCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
+S + + D S I+ L L I +L I + L++L LT L+L+ ++
Sbjct: 149 NLSSNLIQDLSPISELPNLQ----ILLLYKNEIEVLS---PLSNLSGLTELSLDSNKISD 201
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
+ SLS L +L L+L+ Q+ D + + +L L+L N++ D L+ L NL
Sbjct: 202 --ISSLSELNNLTNLSLSENQIQDLSI--IANLENLTQLSLNGNKVNDISLIS--ELQNL 255
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
LNL + I D + + L NLK L L ++ + LS LT LE+++LS I++
Sbjct: 256 TKLNLKTNQIEDLSSL--SNLSNLKELNLDSNKLI--DVSALSSLTQLETLSLSENNITN 311
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH-LDLFGARITDSGAAYLRNFKN 423
++ L+ L +L +L L + QI+D + AL+SLT LT L+L +I+D L N KN
Sbjct: 312 --IQPLSNLENLITLQLRSNQISD--IKALSSLTNLTEDLNLIDNQISD--IKPLSNLKN 365
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
L + + ++D +K + DLS L +L L +N +T+ ++ +S LT L LN+ N++I
Sbjct: 366 LSRVGLSKNQISD--LKPLSDLSKLVILYLDEN-KITE--VQPLSNLTNLTELNLWNNQI 420
Query: 484 TSAGLRHLKPLKNLRSLTLESCKV 507
+ + L L NL L L+ +
Sbjct: 421 KT--IESLSTLDNLTYLGLQENPI 442
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 24/194 (12%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
+LD N I +S L L+ L +LS NN Q + L NL+ L L R +I
Sbjct: 281 NLDSNKLIDVS-----ALSSLTQLETLSLSENNITNIQ---PLSNLENLITLQL-RSNQI 331
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
++K L L +L + N I + SD+KPLS L NL + +S ++++D LK
Sbjct: 332 S----DIKALSSLTNL-TEDLNLIDNQISDIKPLSNLKNLSRVGLSKNQISD-----LKP 381
Query: 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
LS S + IL ++ + L++L LT LNL + ++SLS L +L YL L
Sbjct: 382 LSDLSKLVILYLDENKITEVQP-LSNLTNLTELNLWNNQI--KTIESLSTLDNLTYLGLQ 438
Query: 263 RCQLSDDGCEKFSK 276
+ C K
Sbjct: 439 ENPIEKKECPVQPK 452
>gi|290991310|ref|XP_002678278.1| predicted protein [Naegleria gruberi]
gi|284091890|gb|EFC45534.1| predicted protein [Naegleria gruberi]
Length = 346
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 134/297 (45%), Gaps = 30/297 (10%)
Query: 149 VNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
+N + L ++ ++N +K C+CI D + L NL +L ++C K+ D G+
Sbjct: 71 INGQFLQRIVAVNGMKKCDCIPFLDQ--VFDLKNLTTLDVNCMKIKDEGVK--------- 119
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
++ +++LT LN+ ++ + +S + L LN++R +
Sbjct: 120 -----------------IISEMKQLTNLNVGSSGISVEGVKYISGMNQLTNLNISRNNIR 162
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
+G S++ L LN+ N I E ++ + L LN+ S I D+G +L +
Sbjct: 163 AEGARYVSEMKLLTNLNIYLNGIRAEGTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPK 222
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L L ++ + G + +S + +L ++++ F I D ++ ++ + L L I
Sbjct: 223 LNTLNINSNSISVEGAKFISEIQSLTNLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIG 282
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+ G ++ + LT L++ + GA YL K+L + IC + D + IKD
Sbjct: 283 EKGAKHISEMEQLTSLNINSNNVGTEGAKYLCEMKHLTYMNICNNNV-DKQSQFIKD 338
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 118/237 (49%), Gaps = 1/237 (0%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
LD + L +L L++N ++ D+G + S++ L LN+G + I+ E + ++ G+ L +
Sbjct: 94 LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGSSGISVEGVKYISGMNQLTN 153
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
LN+ I EG ++ + L L + + + G +++S + L +N+ I D
Sbjct: 154 LNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGTKYISEMKELTCLNIMSNAIHDKG 213
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
L + L +LN+++ I+ G ++ + LT+LD+ I D G ++ + L
Sbjct: 214 AEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLTNLDIGFNTIGDDGVKFISKMEKLTK 273
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
L + + G KHI ++ LT LN++ N N+ + + + + L +N+ N+ +
Sbjct: 274 LYTMYINIGEKGAKHISEMEQLTSLNINSN-NVGTEGAKYLCEMKHLTYMNICNNNV 329
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
L ++ L +L +L+++ +I D G+ ++ + LT+L++ + I+ G Y+ L +
Sbjct: 94 LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGSSGISVEGVKYISGMNQLTN 153
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L I + G +++ ++ LT LN+ N + T + IS + L LN+ ++ I
Sbjct: 154 LNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGT-KYISEMKELTCLNIMSNAIHDK 212
Query: 487 GLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 517
G HL+ + L +L + S ++ A I +QS
Sbjct: 213 GAEHLRQMPKLNTLNINSNSISVEGAKFISEIQS 246
>gi|297171918|gb|ADI22905.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
Length = 307
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+T L+ L LG++ YL+L+ + DDG +K+ L+VL L EITD L L
Sbjct: 58 LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNL 117
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
++L L +GD + L L L+++ QV SGL HLSG+ NL+ + LS T
Sbjct: 118 SDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITD 388
I+D L L ++ L+ L L+ +ITD
Sbjct: 177 ITDKGLEHLQSITVLQDLQLNNTKITD 203
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+T + L L L + L+L +GD+G+V++ L L+ L LS T++ +G LS L
Sbjct: 58 LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNL 117
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
++L + S + DG++ LA + L L++ Q+TD+GL+ L+ + L L L
Sbjct: 118 SDLNQLTASEL-MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTD 436
ITD G +L++ L+ L++ +TD
Sbjct: 177 ITDKGLEHLQSITVLQDLQLNNTKITD 203
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 27/198 (13%)
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L + L+LSDT VG G+ H++ L L+ + LS T I+D +L+ LS L L +
Sbjct: 69 LGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNLSDLNQLTA-SE 127
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+ D +AAL S T L LD+ GG +TD+G+ H+
Sbjct: 128 LMGDGTMAALASATKLNFLDM------------------------TGGQVTDSGLSHLSG 163
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ +L L LS+ +TDK LE + +T L L ++N++IT GL L+ L NL L +
Sbjct: 164 MKNLKRLTLSRTA-ITDKGLEHLQSITVLQDLQLNNTKITDEGLLLLEGLSNLNLLAITD 222
Query: 505 CKVTANDIKRLQSRDLPN 522
T N + +LQ+ LP+
Sbjct: 223 TGTTLNGVTKLQAA-LPD 239
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
L L L + +LDL + D G ++ + L+ L + G +TDAG + +LS L
Sbjct: 63 LEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDAGFSQLSNLSDLNQ 122
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
L S+ + D T+ ++ T L L+++ ++T +GL HL +KNL+ LTL +T
Sbjct: 123 LTASEL--MGDGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTAITDK 180
Query: 511 DIKRLQS 517
++ LQS
Sbjct: 181 GLEHLQS 187
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 349 LTNLESINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
++ + S+ + FT ++ L L L ++ L+L + D G+ + L GL L L
Sbjct: 43 VSGIRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLS 102
Query: 407 GARITDSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNL--SQNCNLTD 461
G ITD+G + L N +L L E+ G G A L+S T LN +TD
Sbjct: 103 GTEITDAGFSQLSNLSDLNQLTASELMGDGTMAA-------LASATKLNFLDMTGGQVTD 155
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L +SG+ L L +S + IT GL HL+ + L+ L L + K+T
Sbjct: 156 SGLSHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKIT 202
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 157 LESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+ S+ +++ N +T D++PL L + L +S + V D G+ ++ L V+ + +
Sbjct: 46 IRSVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTE 105
Query: 216 IIRL-FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
I F L+ L +LT L G AA L++ L +L++ Q++D G
Sbjct: 106 ITDAGFSQLSNLSDLNQLTASELMGDGTMAA----LASATKLNFLDMTGGQVTDSGLSHL 161
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
S + +LK L L ITD+ L HL+ +T L+ L L++ I D
Sbjct: 162 SGMKNLKRLTLSRTAITDKGLEHLQSITVLQDLQLNNTKITD 203
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLS + V D G++H+ LQ L + +I+D G L LS+L L+ +
Sbjct: 75 LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDAGFSQLSNLSDLNQLTASE---LMG 130
Query: 122 QG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G M A A L LD+ GL +L G+ L+ L + ITD ++ L +T
Sbjct: 131 DGTMAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSIT 189
Query: 181 NLKSLQISCSKVTD 194
L+ LQ++ +K+TD
Sbjct: 190 VLQDLQLNNTKITD 203
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D M +AS + L +D++G VTDSGL HL NL+ L + I+D GLEHL+
Sbjct: 129 MGDGTMAALAS-ATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQ 186
Query: 104 GLSNLTSLSFRRNNAIT 120
++ L L N IT
Sbjct: 187 SITVLQDLQL-NNTKIT 202
>gi|290973003|ref|XP_002669239.1| predicted protein [Naegleria gruberi]
gi|284082784|gb|EFC36495.1| predicted protein [Naegleria gruberi]
Length = 313
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 1/177 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SL++ IG EG ++ + L L +S Q+G+ G++ + + L+S+N+
Sbjct: 125 MKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLNIIGN 184
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I ++ ++ + L SLN+ QI D G+ + + LT L++ RI GA +
Sbjct: 185 QIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAKLISE 244
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
K L SL+IC + GVK I+++ L LN+S N + D+ + IS + L SLN
Sbjct: 245 MKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGN-QIGDEEAKFISEMKQLTSLN 300
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 3/187 (1%)
Query: 269 DGCEKFSKIGSLKVL---NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
D E+ I +K L ++G N+I E + + L SLN+ IG +G+ + +
Sbjct: 114 DSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEM 173
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
LK L + Q+G+ G++ +S + L S+N+ I D ++ + + L SLN+ +
Sbjct: 174 KQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNR 233
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
I G ++ + LT LD+ RI G ++R K L+SL I G + D K I ++
Sbjct: 234 IGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEM 293
Query: 446 SSLTLLN 452
LT LN
Sbjct: 294 KQLTSLN 300
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 94/187 (50%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F+ +++LT L++ G + A +S + L LN++ Q+ G + ++ LK LN
Sbjct: 121 FINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLN 180
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N+I E + + + L SLN+ IGDEG+ + + L L + ++G+ G +
Sbjct: 181 IIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAK 240
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + L S+++ + I ++ + + LKSLN+ QI D ++ + LT L+
Sbjct: 241 LISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEMKQLTSLN 300
Query: 405 LFGARIT 411
+ ++
Sbjct: 301 TYKIKLV 307
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ ++ + L S+++ I + ++ + L SLN+ QI G+ + + L L
Sbjct: 120 KFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSL 179
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
++ G +I G + K L SL I G + D GVK I ++ LT LN+ N + +
Sbjct: 180 NIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLN-RIGAEG 238
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPN 522
+LIS + L SL++ +RI + G++ ++ +K L+SL + ++ + K + + + L +
Sbjct: 239 AKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEMKQLTS 298
Query: 523 LVSFR 527
L +++
Sbjct: 299 LNTYK 303
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 406 FGARITDS--GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
F ++ DS A ++ K L SL+I G + G K I ++ LT LN+S N + K
Sbjct: 108 FSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYN-QIGAKG 166
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
++ I + L SLN+ ++I + G++ + +K L SL +
Sbjct: 167 VKFIIEMKQLKSLNIIGNQIGAEGVKLISEMKQLASLNI 205
>gi|407424780|gb|EKF39143.1| hypothetical protein MOQ_000636 [Trypanosoma cruzi marinkellei]
Length = 936
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 125/489 (25%), Positives = 216/489 (44%), Gaps = 43/489 (8%)
Query: 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
CAL+DL L Y V ++ M S+ L + L G + GL L+ + L+ LD +
Sbjct: 373 CALRDLDLS-YTQVTEEGMHRDVSRLKKLSRLSLEGCRKIE-GLQWLRALTQLRELDLGY 430
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGL 148
++D L LR L L + IT+ +K G + +L +L+L + GL
Sbjct: 431 S-SVTDDSLTALRFCPELVRLDLQWCGRITS--LKCLVGALCDSLRELNLTETSVTDEGL 487
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
V LK LE ++++ C ++D ++ L LT L+ + + ++VT+ G+ LS+S
Sbjct: 488 VPLKDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNGGV-----LSLSQC 540
Query: 209 IFILCSMIIRLFCL--HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
+ + + + L FL +LQ+L ++L CPVT + +L SL L L C
Sbjct: 541 QALRAMRMRQCYRLTDASFLGALQQLEEVDLSDCPVTNEGIAALCGARSLRKLQLQSCHA 600
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GL 325
D + L +L+L + + V L L +L + S + N L
Sbjct: 601 VSD-VNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHSLQHWNAALFL 659
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESI---------NLSFTGISDGSLRKLAGLSSL 376
LK L+LS T+V S L L LE++ +L F I S + G++
Sbjct: 660 PRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCKNITHLDFLIIQTSSGVGVCGIAPH 719
Query: 377 KSLNLDA--------RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+ D + D G + + ++T + I + AA + LR L
Sbjct: 720 DAEPHDTLVDIIAGKEKNPDDGPSPIENMT------INDGAIKSTAAAPVVGRHRLRELT 773
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G+T+ G++ ++ L L L+ N+T+ + ++ L+ L L++S + +T +GL
Sbjct: 774 LSDTGVTNDGLRALQYCPGLERLRLAHCKNVTE--VAVLRWLSQLKELDLSATGVTGSGL 831
Query: 489 RHLKPLKNL 497
+L P NL
Sbjct: 832 ANLSPSGNL 840
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 128/538 (23%), Positives = 217/538 (40%), Gaps = 84/538 (15%)
Query: 8 QQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
QQ+ + + TEV + A R+ L LG P K V LS+ +S S
Sbjct: 310 QQVSDVTPFLPHCTEVRVLALRNTHLTSEKLGLLP---QKCRHV------EQLSLCMSSS 360
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKA 126
L H C+ L+ LD ++ Q+++ G+ + L L+ LS I +G++
Sbjct: 361 VSCTRFLRHRSLCA-LRDLDLSY-TQVTEEGMHRDVSRLKKLSRLSLEGCRKI--EGLQW 416
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKS 184
L L +LDL + L L+ +L L+++WC IT +K L G +L+
Sbjct: 417 LRALTQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRIT--SLKCLVGALCDSLRE 474
Query: 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
L ++ + VTD G+ LK + L ++LEGC +
Sbjct: 475 LNLTETSVTDEGLVPLKDFA--------------------------ALEWISLEGCGAVS 508
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTN 303
++ L L L +++ R ++++ G S+ +L+ + + +TD L L
Sbjct: 509 D-VNVLCNLTRLREVDVGRTRVTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQ 565
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
LE ++L C + +EG+ L G +L+ L+L S + L GL +L ++L T +
Sbjct: 566 LEEVDLSDCPVTNEGIAALCGARSLRKLQLQSCH-AVSDVNFLGGLEHLMLLDLHHTTVD 624
Query: 364 DGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAY----- 417
+ LA L +L + + + A L L LDL ++T ++
Sbjct: 625 EAGSVGLAQCPQLTTLIMHSVLVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCP 684
Query: 418 ------LRNFKNLRSLE-----------ICGGGLTD-----------AGVKHIKDLSSLT 449
LR KN+ L+ +CG D AG + D
Sbjct: 685 ILETLSLRGCKNITHLDFLIIQTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSP 744
Query: 450 LLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
+ N++ N T + G L L +S++ +T+ GLR L+ L L L CK
Sbjct: 745 IENMTINDGAIKSTAAAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCK 802
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 164/407 (40%), Gaps = 77/407 (18%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG----LEHLR----GLSNLT 109
SL ++L+ + VTD GL+ LKD + L+ + C +SD L LR G + +T
Sbjct: 471 SLRELNLTETSVTDEGLVPLKDFAALEWISLEGCGAVSDVNVLCNLTRLREVDVGRTRVT 530
Query: 110 S---LSFRRNNAITAQGMK--------AFAG-LINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ LS + A+ A M+ +F G L L ++DL C + G+ L G L
Sbjct: 531 NGGVLSLSQCQALRAMRMRQCYRLTDASFLGALQQLEEVDLSDCPVTNEGIAALCGARSL 590
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
L ++ C+ ++D + L GL +L L + + V ++G SV C +
Sbjct: 591 RKLQLQSCHAVSDVNF--LGGLEHLMLLDLHHTTVDEAG----------SVGLAQCPQLT 638
Query: 218 RLFCLHVFLTSLQ---------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ--- 265
L V + SLQ +L L+L VT+ L L L L+L C+
Sbjct: 639 TLIMHSVLVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCKNIT 698
Query: 266 ----------------------------LSD--DGCEKFSKIGSLKVLNLGFNE--ITDE 293
L D G EK G + N+ N+ I
Sbjct: 699 HLDFLIIQTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTINDGAIKST 758
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ G L L L G+ ++GL L L+ L L+ + + + L L+ L+
Sbjct: 759 AAAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCK-NVTEVAVLRWLSQLK 817
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
++LS TG++ L L+ +L + R+ + G + ++TG+
Sbjct: 818 ELDLSATGVTGSGLANLSPSGNLPVRCMREREWKEEGGVSGDNMTGV 864
>gi|290986246|ref|XP_002675835.1| predicted protein [Naegleria gruberi]
gi|284089434|gb|EFC43091.1| predicted protein [Naegleria gruberi]
Length = 820
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L LN+C S++ K+ L +L+ +N I DE + + L SL++ IG EG
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDFIYN-IGDEGAKLISEMKQLTSLDISENNIGVEG 663
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
++ + L L + ++G G++++S + L S+++S+ I + ++ + L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L++ I G ++ + LT LD+ +I D GA Y+ K L SL I + G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783
Query: 439 VKHIKDLSSLTLLNLSQN 456
VK+I ++ LT L++S N
Sbjct: 784 VKYISEMKQLTSLDISYN 801
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 103/204 (50%), Gaps = 13/204 (6%)
Query: 225 FLTSLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
FL +++LTLL+ EG + +S + L L+++ + +G + S++
Sbjct: 619 FLKKMKQLTLLDFIYNIGDEGAKL-------ISEMKQLTSLDISENNIGVEGAKYISEMK 671
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L LN+ NEI E + ++ + L SL++ IG EG ++ + L L++S+ +
Sbjct: 672 QLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTSLDISENNI 731
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G G +++S + L S+++++ I D + ++ + L SLN+ +I G+ ++ +
Sbjct: 732 GVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMK 791
Query: 399 GLTHLDLFGARITDSGAAYLRNFK 422
LT LD+ +I GA YL K
Sbjct: 792 QLTSLDISYNKIGVEGAKYLSEMK 815
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 2/217 (0%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L L CP + ++ L + L L+ + D+G + S++ L L++ N I E
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDF-IYNIGDEGAKLISEMKQLTSLDISENNIGVEG 663
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++ + L SLN+ IG EG+ ++ + L L++S ++G G +++S + L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+++S I + ++ + L SL+++ +I D G ++ + LT L++ I G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
Y+ K L SL+I + G K++ ++ + T+
Sbjct: 784 VKYISEMKQLTSLDISYNKIGVEGAKYLSEMKTKTIY 820
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 54/249 (21%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L LDF I D G + + + LTSL NN I +G K + + L L
Sbjct: 620 LKKMKQLTLLDF--IYNIGDEGAKLISEMKQLTSLDISENN-IGVEGAKYISEMKQLTSL 676
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ R N I +K +S + L SL IS +K+ G
Sbjct: 677 NICR-------------------------NEIGVEGVKYISEMKQLTSLDISYNKIGVEG 711
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
Y ++ +++LT L++ + +S + L
Sbjct: 712 AKY--------------------------ISEMKQLTSLDISENNIGVEGAKYISEMKQL 745
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
L++N ++ D+G + SK+ L LN+ NEI E + ++ + L SL++ IG
Sbjct: 746 TSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGV 805
Query: 317 EGLVNLTGL 325
EG L+ +
Sbjct: 806 EGAKYLSEM 814
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +++ G ++ + L SLD N+ +I D G +++ + LTSL+
Sbjct: 716 SEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYN-KIGDEGAKYISKMKQLTSLNI 774
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL 138
RR N I +G+K + + L LD+
Sbjct: 775 RR-NEIGVEGVKYISEMKQLTSLDI 798
>gi|395538856|ref|XP_003771390.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Sarcophilus
harrisii]
Length = 341
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 169/320 (52%), Gaps = 28/320 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + + + LNL GC +T L + +GS LNL+ C Q++D + ++
Sbjct: 23 LSYVIQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQY 82
Query: 277 IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN------ 327
+ L+VL LG + IT+ L+ + GL L+SLNL C + D G+ +L G+
Sbjct: 83 LKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGC 142
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + L+H+S GL L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 143 LGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 202
Query: 383 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L SL C ++D
Sbjct: 203 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDD 261
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 262 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 321
Query: 495 KNLRSLTLESCKVTANDIKR 514
L+ L L ++T ++ R
Sbjct: 322 PCLKVLNLGLWQMTESEKVR 341
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 162/331 (48%), Gaps = 38/331 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + + +L+ IT + A + L
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQYLKGL 86
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 87 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMT--RSAAEGC-- 142
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
L + + C + L H+ L L LLNL C ++ A L L
Sbjct: 143 -----------LGLEQLTLQDCQKLTDLSLKHIS-RGLAGLRLLNLSFCGGISDAGLLHL 190
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLE 305
S +GSL LNL C +SD G + +GSL++ L++ F +++ D+ L ++ +GL L
Sbjct: 191 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLN 249
Query: 306 SLNLDSCGIGDEGL----VNLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINLS 358
SL+ C I D+G+ + GL L +C+ ++D + HLS LT ++
Sbjct: 250 SLSRCPCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA-EHLSQLTGIDLYG-- 306
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
T I+ L ++ L LK LNL Q+T++
Sbjct: 307 CTRITKRGLERITQLPCLKVLNLGLWQMTES 337
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 120/246 (48%), Gaps = 34/246 (13%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGL-------VNLTGLCNLK-CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C + D GL + NL C +++D+ +G ++L G
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIA-QYLKG 85
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL R ++D G+ L +T
Sbjct: 86 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEG 141
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 142 CLGLEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 200
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D + L G L L+VS ++ L ++ + L L SL+ C ++
Sbjct: 201 LRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISD 260
Query: 510 NDIKRL 515
+ I R+
Sbjct: 261 DGINRM 266
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 53/229 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 156 LTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 215
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L SL+ C+ D + + + L++
Sbjct: 216 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRT 275
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 276 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 308
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+++ G E+ +++ LKVLNLG ++T+
Sbjct: 309 ---------------------RITKRGLERITQLPCLKVLNLGLWQMTE 336
>gi|406830743|ref|ZP_11090337.1| hypothetical protein SpalD1_03864 [Schlesneria paludicola DSM
18645]
Length = 304
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 35/240 (14%)
Query: 314 IGDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTNLESINLSFTGISD------ 364
+ DEG L L L +E DT++ + LR L G +L+ +++SF ISD
Sbjct: 58 VTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLSISFAKISDDSAKLL 117
Query: 365 GSLRKLA-------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
G+LR L L+SLK L L R D + L + L L +
Sbjct: 118 GTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAMEELRRMPYLKTLTV 177
Query: 406 FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKT 463
++D+G A LR K+LR+L I G +T+ GV+H LS L L +L N+TDK
Sbjct: 178 RSVFVSDAGLASLRQVKSLRNLRILLGPKVTEEGVRH---LSELDLADLDITYLNVTDKE 234
Query: 464 LELISGLTGLVSLN-VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
L+ + GL L VS +++T + L L L+ L + K++ I +L+ R LPN
Sbjct: 235 LKSLRKFKGLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGIGQLE-RALPN 293
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 121/270 (44%), Gaps = 32/270 (11%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
L L L ++ +L +L SLK L++ F +I+D+ L L +LE
Sbjct: 65 ALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLSISFAKISDDSAKLLGTLRSLE 124
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + ++ L + LT+L+ + LS D
Sbjct: 125 VLELR-----------------------AQVEIHPKVLGEVFNLTSLKELTLSDRLADDP 161
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD-LFGARITDSGAAYLRNFKNL 424
++ +L + LK+L + + ++D GLA+L + L +L L G ++T+ G +L +L
Sbjct: 162 AMEELRRMPYLKTLTVRSVFVSDAGLASLRQVKSLRNLRILLGPKVTEEGVRHLSEL-DL 220
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L+I +TD +K ++ L L L +TD+ + +S L+ L L++++++++
Sbjct: 221 ADLDITYLNVTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLS 280
Query: 485 SAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
AG+ L+ L +CK+ + I R
Sbjct: 281 KAGIGQLE-------RALPNCKIAYDSIPR 303
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 28/202 (13%)
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-------------FN-- 288
A L +L SL L+++ ++SDD + + SL+VL L FN
Sbjct: 87 PATLRALQGKRSLKRLSISFAKISDDSAKLLGTLRSLEVLELRAQVEIHPKVLGEVFNLT 146
Query: 289 ---EIT-------DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-LSDTQ 337
E+T D + L+ + L++L + S + D GL +L + +L+ L L +
Sbjct: 147 SLKELTLSDRLADDPAMEELRRMPYLKTLTVRSVFVSDAGLASLRQVKSLRNLRILLGPK 206
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTS 396
V G+RHLS L +L +++++ ++D L+ L LK L L A ++TD + L+
Sbjct: 207 VTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFLSE 265
Query: 397 LTGLTHLDLFGARITDSGAAYL 418
L+ L LD+ A+++ +G L
Sbjct: 266 LSELKRLDIADAKLSKAGIGQL 287
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--- 428
G S+ + NL RQ+TD G AL L L ++ G T+ A LR + RSL+
Sbjct: 46 GPVSVVTYNL--RQVTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLS 103
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
I ++D K + L SL +L L + K L + LT L L +S+ +
Sbjct: 104 ISFAKISDDSAKLLGTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAM 163
Query: 489 RHLKPLKNLRSLTLESCKVT 508
L+ + L++LT+ S V+
Sbjct: 164 EELRRMPYLKTLTVRSVFVS 183
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL + LS D + L+ L++L + +SD GL LR + +L +L
Sbjct: 146 TSLKELTLSDRLADDPAMEELRRMPYLKTLTVR-SVFVSDAGLASLRQVKSLRNLRILLG 204
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +G++ + L +L LD+ L +L+ L+ L + +TD + L
Sbjct: 205 PKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S L+ LK L I+ +K++ +GI L+
Sbjct: 264 SELSELKRLDIADAKLSKAGIGQLE 288
>gi|397781344|ref|YP_006545817.1| Internalin-A [Methanoculleus bourgensis MS2]
gi|396939846|emb|CCJ37101.1| Internalin-A [Methanoculleus bourgensis MS2]
Length = 2759
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 89/273 (32%), Positives = 142/273 (52%), Gaps = 23/273 (8%)
Query: 137 DLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
D+ TR+ G+ +L GL +L + + SD+ PL+GLTNL++L + ++V+
Sbjct: 1506 DMATLTRLSAAGRGIRDLSGLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVS 1565
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
D ++ L GL+ ++ L IR LT+L++L L + + L L+ L
Sbjct: 1566 D--LSPLAGLTNLQRLW-LNQNQIRDVSPLAGLTNLRELLLAVNQ-----ISDLSPLAGL 1617
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+L Y+ L R Q+SD + + +L + L N+I+D L L GLTNL L++
Sbjct: 1618 TNLGYVQLYRNQISD--LSPLAGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQ 1673
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
I D L L L NL L++S Q+ S + L+GLT L ++L ISD + LAGL
Sbjct: 1674 ISD--LSPLASLTNLYFLDISYNQI--SDISPLAGLTRLSRLSLDNNQISD--ISPLAGL 1727
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+L LNL+ QI D ++ L + +GL D++
Sbjct: 1728 INLYVLNLNYNQIRD--ISPLVANSGLAGDDVY 1758
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 93/291 (31%), Positives = 136/291 (46%), Gaps = 39/291 (13%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
G + +NL +S++ S + +L+ L L N+++D L L GLTNL+ L L+
Sbjct: 1525 GLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVSD--LSPLAGLTNLQRLWLN 1582
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
I D + L GL NL+ L L+ Q+ S L L+GLTNL + L ISD L L
Sbjct: 1583 QNQIRD--VSPLAGLTNLRELLLAVNQI--SDLSPLAGLTNLGYVQLYRNQISD--LSPL 1636
Query: 371 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
AGL++L + L QI+D L+ L LT L LD+ +I+D + L + NL L+I
Sbjct: 1637 AGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQISD--LSPLASLTNLYFLDI- 1691
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
I D+S L L +L + + IS L GL++L V N + +R
Sbjct: 1692 -------SYNQISDISPLAGLTRLSRLSLDNNQISDISPLAGLINLYVLN--LNYNQIRD 1742
Query: 491 LKPLK------------NLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
+ PL L L NDI+ LQSR + V + P+
Sbjct: 1743 ISPLVANSGLAGDDVYLQYNYLDLTPGSAAMNDIQTLQSRGV--YVVYEPQ 1791
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 318 GLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
G+ +L+GL NL+ L L + S L L+GLT+L++++L ISD L LAGL+
Sbjct: 727 GIRDLSGLEYAVNLQHLYLQQNR-QISDLGPLAGLTDLQTLDLWNNQISD--LSPLAGLT 783
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
+L L L + QI+D G L LT L L L+ +I D G L NL L + +
Sbjct: 784 NLSVLLLGSNQISDIG--PLAGLTDLQRLHLYDNQIRDIGP--LAGLTNLWELRLYNNQI 839
Query: 435 TDAG 438
D G
Sbjct: 840 RDIG 843
Score = 41.2 bits (95), Expect = 1.2, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD L L GL+NL + RN + AGL NL LD+ +I L L
Sbjct: 1629 QISD--LSPLAGLTNLGYVQLYRNQI---SDLSPLAGLTNLYFLDISY-NQI-SDLSPLA 1681
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L L L+I + N I SD+ PL+GLT L L + ++++D I+ L GL
Sbjct: 1682 SLTNLYFLDISY-NQI--SDISPLAGLTRLSRLSLDNNQISD--ISPLAGL 1727
Score = 41.2 bits (95), Expect = 1.2, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 7/78 (8%)
Query: 122 QGMKAFAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+G++ +GL +NL L L++ +I L L GL L++L++ W N I SD+ PL+G
Sbjct: 726 RGIRDLSGLEYAVNLQHLYLQQNRQI-SDLGPLAGLTDLQTLDL-WNNQI--SDLSPLAG 781
Query: 179 LTNLKSLQISCSKVTDSG 196
LTNL L + ++++D G
Sbjct: 782 LTNLSVLLLGSNQISDIG 799
>gi|421888173|ref|ZP_16319281.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
gi|378966462|emb|CCF96029.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
Length = 466
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 132/314 (42%), Gaps = 51/314 (16%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L SL++L L G P+TAA + L AL L L++ C+L+ D + +L
Sbjct: 143 LQRLPPSLRELDLSQCTG-PITAAGIARLLAL-PLDRLDVGGCRLNADSARLLAGHPTLT 200
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L++ N I D + L +LN S GIG G+ L + L++SD ++G
Sbjct: 201 ALDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDE 260
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
G R L+G T L ++ S +GI R LA +L SL+L +I G AL T LT
Sbjct: 261 GARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLT 320
Query: 402 HL------------------------DLFGARITDSGA---------------------- 415
L DL I +GA
Sbjct: 321 TLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGIERV 380
Query: 416 -AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
A+ N K L L+I + DA + + D +LT LN S N + D ++G T L
Sbjct: 381 SAWANNSK-LTKLDISNNRIGDAAAQVLADSRTLTTLNASSN-RIGDAGASALAGNTTLA 438
Query: 475 SLNVSNSRITSAGL 488
+LNVS +RI AGL
Sbjct: 439 TLNVSFNRIGEAGL 452
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 121/309 (39%), Gaps = 51/309 (16%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A + AG L LD+ R G+ KL +LN N I + ++ L+
Sbjct: 185 LNADSARLLAGHPTLTALDIRRNAIGDAGVAAFARNKKLTALNAS-SNGIGPAGVRALAA 243
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL-TLLNL 237
T + +L IS +++ D G L G H LT L + +
Sbjct: 244 NTTIATLDISDNEIGDEGARALAG--------------------HTALTKLDASDSGIGP 283
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN-----LGFNEITD 292
EG A + +L L+L+ ++ +G E + +L L+ LG E
Sbjct: 284 EGTRALATSM-------TLASLDLSYNEIGAEGAEALGENTTLTTLHVCGNALGHREAAL 336
Query: 293 ECLVHLKGLTNLESLNLDSCG--------------IGDEGLVNLTGLCN---LKCLELSD 335
+L S + S G + + G+ ++ N L L++S+
Sbjct: 337 LAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGIERVSAWANNSKLTKLDISN 396
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++G + + L+ L ++N S I D LAG ++L +LN+ +I + GL AL
Sbjct: 397 NRIGDAAAQVLADSRTLTTLNASSNRIGDAGASALAGNTTLATLNVSFNRIGEAGLLALE 456
Query: 396 SLTGLTHLD 404
+ T L L+
Sbjct: 457 ANTTLKKLE 465
>gi|290996873|ref|XP_002681006.1| predicted protein [Naegleria gruberi]
gi|284094629|gb|EFC48262.1| predicted protein [Naegleria gruberi]
Length = 207
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 103/201 (51%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT LN+ G + +S + L L+++R ++ +G + S++ L LN+ +N
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
EI E ++ + +L SLN+ IG EG ++ + L L ++D ++G G + +S
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ +L S+ + + I + ++ + L SLN+ QI D G ++ + LT L++
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180
Query: 409 RITDSGAAYLRNFKNLRSLEI 429
I GA ++ K L SL I
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 1/204 (0%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L LN+G NEI E ++ + +L SL++ IG EG ++ + +L L + ++G
Sbjct: 4 LTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYNEIG 63
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G +++S + +L S+N+ I + ++ + L SLN+ +I G ++ +
Sbjct: 64 VEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISEMKH 123
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
LT L ++ I GA ++ K+L SL I G + D G K I ++ SLT LN+ N +
Sbjct: 124 LTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN-EI 182
Query: 460 TDKTLELISGLTGLVSLNVSNSRI 483
+ + ISG+ L SLN+ ++ +
Sbjct: 183 GVEGAKFISGMKQLTSLNIDDNEL 206
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 1/203 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ IG EG ++ + +L L++ ++G G + +S + +L S+N+ +
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I + ++ + L SLN+ +I G ++ + LT L++ I G+ ++
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K+L SL I + G K I ++ LT LN+S N + D+ + IS + L SLN+ +
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGN-QIGDEGSKFISEMKSLTSLNIGD 179
Query: 481 SRITSAGLRHLKPLKNLRSLTLE 503
+ I G + + +K L SL ++
Sbjct: 180 NEIGVEGAKFISGMKQLTSLNID 202
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 92/181 (50%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ ++ LT L++ + +S + L LN+ ++ +G + S++ L LN
Sbjct: 21 YMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYNEIGVEGSKYISEMKHLTSLN 80
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G NEI E ++ + L SLN+ IG EG ++ + +L L + ++G G +
Sbjct: 81 IGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISEMKHLTSLYIYYNEIGVEGAK 140
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+S + +L S+N+S I D + ++ + SL SLN+ +I G ++ + LT L+
Sbjct: 141 FISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDNEIGVEGAKFISGMKQLTSLN 200
Query: 405 L 405
+
Sbjct: 201 I 201
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 81/162 (50%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ ++ LT LN+ + +S + L LN+ ++ +G + S++ L LN
Sbjct: 45 FISEMKHLTSLNIYYNEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLN 104
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ NEI E + + +L SL + IG EG ++ + +L L +S Q+G G +
Sbjct: 105 IADNEIGVEGSKFISEMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSK 164
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+S + +L S+N+ I + ++G+ L SLN+D ++
Sbjct: 165 FISEMKSLTSLNIGDNEIGVEGAKFISGMKQLTSLNIDDNEL 206
>gi|443316011|ref|ZP_21045475.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
gi|442784393|gb|ELR94269.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
Length = 437
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 174/348 (50%), Gaps = 39/348 (11%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
D++PLS LTNL SL +S ++++D I L L+ +F+ + I + L L
Sbjct: 94 DVRPLSTLTNLTSLVLSGNQISD--IQPLASLTKLESLFLESNQITNIQSLG----GLHN 147
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
LT L+L G V + LS L L +L L+ Q+ D + + +L+ L L +N+I
Sbjct: 148 LTWLSLSGNQVVD--VQPLSNLTGLEWLFLDDNQIVD--VAPLATLQNLERLLLSYNQI- 202
Query: 292 DECLVHLKGLTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
V + L+ LE L NL G E + L+GL NL LEL + QV ++ L+ L
Sbjct: 203 ----VEIGALSALEKLQNLYLNGNQIEDVQPLSGLRNLAWLELKENQV--MNIQPLADLE 256
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
NL + L I D ++ LA LS+LK+L L+ QITD +++L +LT L L L +I
Sbjct: 257 NLRWLGLDDNQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQI 312
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
D + L +NL L + G I ++S L+ L + L D ++ + L
Sbjct: 313 VDIQSLSL--LENLTFLVLSG--------NQIVNVSPLSALVRLERLGLNDNQIQDVQPL 362
Query: 471 TGLVSLNV---SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L +L+V SN++I + L L+N+ L+L+ ++ DI+ L
Sbjct: 363 ATLTNLSVLVLSNNQIVD--VEPLAALENVGLLSLDHNQIV--DIQPL 406
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 166/364 (45%), Gaps = 65/364 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LSG+ ++D + L + L+SL F QI++ ++ L GL NLT LS N
Sbjct: 102 TNLTSLVLSGNQISD--IQPLASLTKLESL-FLESNQITN--IQSLGGLHNLTWLSLSGN 156
Query: 117 NAITAQGMKAFAGL----------INLVKL----DLERCTRIHGGLVNLKGLMKLESLNI 162
+ Q + GL +++ L +LER + +V + L LE L
Sbjct: 157 QVVDVQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGALSALEKLQN 216
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
+ N D++PLSGL NL L++ ++V ++I
Sbjct: 217 LYLNGNQIEDVQPLSGLRNLAWLELKENQV----------MNIQP--------------- 251
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
L L+ L L L+ + + L+AL +L L LN Q++D + + +L+
Sbjct: 252 ---LADLENLRWLGLDDNQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLES 304
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN---LTGLCNLKCLELSDTQVG 339
L LG N+I D ++ L+ LE NL + +VN L+ L L+ L L+D Q+
Sbjct: 305 LVLGDNQIVD-----IQSLSLLE--NLTFLVLSGNQIVNVSPLSALVRLERLGLNDNQI- 356
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
++ L+ LTNL + LS I D + LA L ++ L+LD QI D + S G
Sbjct: 357 -QDVQPLATLTNLSVLVLSNNQIVD--VEPLAALENVGLLSLDHNQIVDIQPLSQLSRLG 413
Query: 400 LTHL 403
L HL
Sbjct: 414 LLHL 417
>gi|290977818|ref|XP_002671634.1| predicted protein [Naegleria gruberi]
gi|284085204|gb|EFC38890.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 27/304 (8%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F + L K+ L T G L GL L +++ N + + LS L+ L L
Sbjct: 58 FESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 187 I-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
I S + +T G+ YL LS KLT L + G T
Sbjct: 118 IGSKNNITYEGVEYLSQLS--------------------------KLTYLCITGNETTDE 151
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+ +S+ L LN+ +SD E S + L VL + N+I + + G+ L+
Sbjct: 152 QVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTVLVINNNQIGSKGAKFISGMKQLK 211
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L+ +G+ G+ ++ + L L + +T++G+SG +++ L L+ +++S+ GI++
Sbjct: 212 QLSDSYTKLGETGVKHICEMTQLTHLYICNTKIGNSGAKNIIKLKQLQLLDISYNGINNE 271
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
+ L+ L L LN+ I + L + + LT+LD+ I D G Y+ K L+
Sbjct: 272 IVELLSQLDQLTFLNISGSAIDNLALTFINKMNQLTYLDVSYNGINDEGLIYISKMKPLK 331
Query: 426 SLEI 429
+ I
Sbjct: 332 QVGI 335
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 137/291 (47%), Gaps = 7/291 (2%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
D + + L + +S + G YL GL+ + I + L+ +L+ L +
Sbjct: 54 DCEIFESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLY-YLSKLSQ 112
Query: 232 LTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
LT L++ +T ++ LS L L YL + + +D+ + S LK LN+ N I
Sbjct: 113 LTKLSIGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLI 172
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
+D+ ++ L L L +++ IG +G ++G+ LK L S T++G +G++H+ +T
Sbjct: 173 SDKSAEYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMT 232
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L + + T I + + + L L+ L++ I + + L+ L LT L++ G+ I
Sbjct: 233 QLTHLYICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAI 292
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQN 456
+ ++ L L++ G+ D G+ +I + L L LS+N
Sbjct: 293 DNLALTFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRN 343
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 97/177 (54%), Gaps = 3/177 (1%)
Query: 333 LSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTG 390
LS + S G ++L+GL NL I++ S+ + SL L+ LS L L++ ++ IT G
Sbjct: 69 LSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNNITYEG 128
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
+ L+ L+ LT+L + G TD + +FK L++L I ++D ++I +L LT+
Sbjct: 129 VEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTV 188
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L ++ N + K + ISG+ L L+ S +++ G++H+ + L L + + K+
Sbjct: 189 LVINNN-QIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNTKI 244
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 117/256 (45%), Gaps = 27/256 (10%)
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 329
CE F + L + L I + +L GL NL +++DS G+E L L+ L L
Sbjct: 55 CEIFESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLT 114
Query: 330 CLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L + S + G+ +LS L+ L + ++ +D ++ ++ LK+LN+ + I+D
Sbjct: 115 KLSIGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISD 174
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+++L LT L + +I GA ++ K L+ L L + GVKHI +++ L
Sbjct: 175 KSAEYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQL 234
Query: 449 T------------------------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
T LL++S N + ++ +EL+S L L LN+S S I
Sbjct: 235 THLYICNTKIGNSGAKNIIKLKQLQLLDISYN-GINNEIVELLSQLDQLTFLNISGSAID 293
Query: 485 SAGLRHLKPLKNLRSL 500
+ L + + L L
Sbjct: 294 NLALTFINKMNQLTYL 309
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 16/291 (5%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V LS + G +L +NL + + + L +L LS LT LS N
Sbjct: 64 LTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNN 123
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G++ + L L L + + + +L++LNI + N I+D + +S
Sbjct: 124 ITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNI-YSNLISDKSAEYISN 182
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGL----SISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L L L I+ +++ G ++ G+ +S L ++ C + +LT
Sbjct: 183 LDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHIC------EMTQLTH 236
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L + + + ++ L L L+++ ++++ E S++ L LN+ + I +
Sbjct: 237 LYICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLA 296
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK-----CLELSDTQVGS 340
L + + L L++ GI DEGL+ ++ + LK L+LS Q+GS
Sbjct: 297 LTFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRNQMGS 347
>gi|290979547|ref|XP_002672495.1| predicted protein [Naegleria gruberi]
gi|284086072|gb|EFC39751.1| predicted protein [Naegleria gruberi]
Length = 665
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 18/229 (7%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT L++ T + + ++G L NL + S D E +S + V
Sbjct: 433 MKQLTYLDI---SFTGISYNGMRSIGQL--TNLTQLIFSSDDYENYSAPKGVTVA----- 482
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+HL+ L L L++ IGDEG ++ L NL LE+ + Q+ + G + +S
Sbjct: 483 -------IHLRNLKKLTHLDITYNEIGDEGSQFISELLNLTYLEMPNNQLRNEGFKMISK 535
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFG 407
L NL +N+S + S++ L L +L SL IT + + + L LT LDL
Sbjct: 536 LENLTHLNISNNDFNCESMKHLCELKNLTSLEAFNTGITSNDVKLIANHLKYLTELDLSC 595
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
I + GA Y+ K L+SL++ L GVK++ L LT L++S+N
Sbjct: 596 NDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYLVRLDQLTDLDVSEN 644
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 9/235 (3%)
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+IT E L ++ L + +++ + IGDEG + + L L++S T + +G+R +
Sbjct: 397 KITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDISFTGISYNGMRSIGQ 456
Query: 349 LTNLESINLSFTGISDGSLRK-------LAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
LTNL + S + S K L L L L++ +I D G ++ L LT
Sbjct: 457 LTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISELLNLT 516
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
+L++ ++ + G + +NL L I +KH+ +L +LT L + N +T
Sbjct: 517 YLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCELKNLTSLE-AFNTGITS 575
Query: 462 KTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
++LI+ L L L++S + I + G +++ LK L+SL L + + +K L
Sbjct: 576 NDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYL 630
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 28/151 (18%)
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
IHL++ L LD + +I D G + + L NLT L NN + +G K + L NL
Sbjct: 483 IHLRNLKKLTHLDITYN-EIGDEGSQFISELLNLTYLEMP-NNQLRNEGFKMISKLENLT 540
Query: 135 KLDLER----CTRIHGGLVNLKGLMKLESLN--------------IKW-------CNCIT 169
L++ C + L LK L LE+ N +K+ CN I
Sbjct: 541 HLNISNNDFNCESM-KHLCELKNLTSLEAFNTGITSNDVKLIANHLKYLTELDLSCNDIG 599
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
+ K +S L L+SLQ++ + + G+ YL
Sbjct: 600 NEGAKYVSELKQLQSLQLAQTNLDSEGVKYL 630
>gi|427735495|ref|YP_007055039.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
gi|427370536|gb|AFY54492.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
Length = 396
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 163/317 (51%), Gaps = 27/317 (8%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
SD+KPLSGLTNL ++ + +K++D + L L+ + + I + I + L SL
Sbjct: 84 SDLKPLSGLTNLTNIDLWGNKISD--VKPLVNLTNLTNLNIGGNKISDVKP----LASLT 137
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
LT L+L G ++ L++L +L L++ Q+SD + +L L +G N I
Sbjct: 138 NLTNLDLGGNKISDVT--PLASLTNLIRLDVYSNQISD--INSLENLNNLTFLRVGSNRI 193
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
D + TNL L L+ I D + L+ L NL L L Q+ S ++ ++ L
Sbjct: 194 VD--VKQFANFTNLTELWLEENQISD--VRPLSSLNNLTKLNLMSNQI--SDIKPIASLN 247
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
+L S++L ISD + L+ L++L +L LD QI + + L++LT L L L +I
Sbjct: 248 SLNSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IKPLSNLTKLRWLFLRQNQI 303
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
+D L + NLR LE+ + D VK + +L+ L LNLS N +T+ ++ ++ L
Sbjct: 304 SD--IKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLSSN-QITN--VQSLANL 356
Query: 471 TGLVSLNVSNSRITSAG 487
T LV+ NV + I +
Sbjct: 357 TNLVNFNVEENPINTKS 373
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SSL + L ++D L L +NL ++D + +ISD ++ L L+NLT+L+ N
Sbjct: 71 SSLTELRLLTKQISD--LKPLSGLTNLTNIDL-WGNKISD--VKPLVNLTNLTNLNIGGN 125
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K A L NL LDL GG N I SD+ PL
Sbjct: 126 ---KISDVKPLASLTNLTNLDL-------GG------------------NKI--SDVTPL 155
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LTNL L + ++++D I L+ L+ + + + + I+ + F LT L
Sbjct: 156 ASLTNLIRLDVYSNQISD--INSLENLNNLTFLRVGSNRIVDVKQFANF----TNLTELW 209
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
LE ++ + LS+L +L LNL Q+SD + + + SL L+L N+I+D +
Sbjct: 210 LEENQISD--VRPLSSLNNLTKLNLMSNQISD--IKPIASLNSLNSLDLDKNQISD--IE 263
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L LTNL +L LD I + + L+ L L+ L L Q+ S ++ LS LTNL +
Sbjct: 264 ALSNLTNLTTLGLDRNQIIN--IKPLSNLTKLRWLFLRQNQI--SDIKPLSSLTNLRWLE 319
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGL 400
L I D ++ L L+ L++LNL + QIT+ LA LT+L
Sbjct: 320 LKSNKIRD--VKPLTNLAKLRNLNLSSNQITNVQSLANLTNLVNF 362
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 73/310 (23%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DL G+ ++D + L +NL LD + QISD + L NL +L+F R
Sbjct: 137 TNLTNLDLGGNKISD--VTPLASLTNLIRLDV-YSNQISD-----INSLENLNNLTFLRV 188
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +K FA NL +L LE N I SD++PL
Sbjct: 189 GSNRIVDVKQFANFTNLTELWLEE-------------------------NQI--SDVRPL 221
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
S L NL L + ++++D +K ++ SL L L+
Sbjct: 222 SSLNNLTKLNLMSNQISD-----IKPIA-----------------------SLNSLNSLD 253
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L+ ++ +++LS L +L L L+R Q+ + + S + L+ L L N+I+D +
Sbjct: 254 LDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IKPLSNLTKLRWLFLRQNQISD--IK 307
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L LTNL L L S I D + LT L L+ L LS Q+ + ++ L+ LTNL + N
Sbjct: 308 PLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLSSNQI--TNVQSLANLTNLVNFN 363
Query: 357 LSFTGISDGS 366
+ I+ S
Sbjct: 364 VEENPINTKS 373
>gi|149178815|ref|ZP_01857396.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148842356|gb|EDL56738.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1189
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG 407
LT++E IN+ ++D L L G +L+ +NL + + TD GLA L+ GL LDL+G
Sbjct: 547 LTHVELINMK--KVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWG 604
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNLTDK 462
IT G Y +F +LR L + L+ + +K +SL +L+L+Q D
Sbjct: 605 TNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQA---DDS 661
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
TL ++SG + L LN+ + I GL L+ +NLR+L L VT I+RL ++ LP
Sbjct: 662 TLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRL-AQALPE 720
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 20/260 (7%)
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
+N +++D G +L+ +NL ++ E TD L HL L+ L+L I +GL
Sbjct: 553 INMKKVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWGTNITKQGL 612
Query: 320 VNLTGLCNLKCLELSDTQVGS---SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
T +L+ L L DTQ+ + S L+ + L LE + LS T D +L L+G S L
Sbjct: 613 EYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQADDSTLAILSGASQL 672
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--------NFKNLRSLE 428
LNL+ I D GL +L L +L L +T G L ++ L+
Sbjct: 673 GQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRLAQALPECDIDWSELKKTS 732
Query: 429 ICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-- 485
G T DAG + D + Q ++ K +E+ G G + + N +
Sbjct: 733 TSNGRWTPDAGQQKFFD-EVARMKATDQVVAVSQKLMEVNPGFDGKLKETIENGHVVGLT 791
Query: 486 --AG--LRHLKPLKNLRSLT 501
AG + + P++ L LT
Sbjct: 792 FLAGDHIAEIWPVRALSDLT 811
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
I+ KVTD+G+A L+G + + S L L+ + L L+L G +T
Sbjct: 553 INMKKVTDTGLAALRGTKNLRFVNLAYSPEFTDAGL-AHLSDNRGLQRLDLWGTNITKQG 611
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
L+ + L L L QLS + ++++ + L++L L + D L L G +
Sbjct: 612 LEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQADDSTLAILSGASQ 671
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
L LNL+ I D GL +L NL+ L L+ T V + G+R L+
Sbjct: 672 LGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRLA 715
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL L+ NL+ ++ + + +D GL HL L L N IT QG++ F
Sbjct: 558 VTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWGTN-ITKQGLEYFT 616
Query: 129 GLINLVKLDLERCTRIHGGLVNLK---GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+L L L L LK L KLE L + DS + LSG + L L
Sbjct: 617 DFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQA-DDSTLAILSGASQLGQL 675
Query: 186 QISCSKVTDSGIAYLK 201
+ + + D G+ L+
Sbjct: 676 NLEQTNINDVGLESLE 691
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG--- 123
+ TD+GL HL D LQ LD + I+ GLE+ +L L + ++A+
Sbjct: 581 PEFTDAGLAHLSDNRGLQRLDL-WGTNITKQGLEYFTDFPDLRDLRL-GDTQLSAEDLSI 638
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K +A L L L L L L G +L LN++ N I D ++ L NL+
Sbjct: 639 LKRYASLQKLELLMLSLTQADDSTLAILSGASQLGQLNLEQTN-INDVGLESLEQNRNLR 697
Query: 184 SLQISCSKVTDSGIAYL 200
+L ++ + VT GI L
Sbjct: 698 NLYLNKTPVTTEGIRRL 714
>gi|299067411|emb|CBJ38610.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CMR15]
Length = 620
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 123/458 (26%), Positives = 188/458 (41%), Gaps = 61/458 (13%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC---- 167
S R +T + +KA L L++ RCT G ++ +GL L + +K N
Sbjct: 145 SVRFKGELTLEALKALP--PTLEHLEIGRCT---GSAISAEGLAHLAEMPLKSLNLTGIE 199
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I + L+ T+L SL + + D L + + +MI R +
Sbjct: 200 IGVEGARTLAASTSLVSLTLIGCGIGDRAAQALAASQSIKSLDLSVNMIGRDGAQAL--- 256
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+ LT LNL + +L+A +L L+ ++ + + G E +K L+ LNL
Sbjct: 257 AAAPLTSLNLYYNEIGDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLAH 316
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL---- 343
N I + L G T+L L+L +GD G + L G +L L++ ++G G
Sbjct: 317 NMIGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALA 376
Query: 344 RH--------------------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
RH L T L +NLSF GI S LA SL L L+
Sbjct: 377 RHATLTSLDLSYNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNG 436
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------- 436
I D G L LT LDL I ++GA L + L SL++ G G+ D
Sbjct: 437 NWIGDYGALELAKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALA 496
Query: 437 -----------------AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
G +H+ ++L L+LSQN + E +S T L++LNVS
Sbjct: 497 RHPRLTTLDLSRNRIGAEGARHLAQSATLAELDLSQN-RIGPDGAEALSQSTALITLNVS 555
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
++ I AG R L +L SL + + K L++
Sbjct: 556 HNAIGEAGARSLADSASLTSLDARRNGIGEDGAKVLEA 593
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 160/384 (41%), Gaps = 26/384 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL+S+ L G + D L +++SLD + + DG + LTSL+ N
Sbjct: 212 TSLVSLTLIGCGIGDRAAQALAASQSIKSLDLSVNMIGRDGA--QALAAAPLTSLNLYYN 269
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G A A L LD + + G L L LN+ N I ++ L
Sbjct: 270 E-IGDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLA-HNMIGTPGVRAL 327
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG----LSISSVIFILCSMIIRLFCLHVFLTSLQ-- 230
+G T+L L + +++ D+G L G LS+ + + H LTSL
Sbjct: 328 AGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARHATLTSLDLS 387
Query: 231 ----------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
L++LNL C + + +L+ SL L LN + D G +
Sbjct: 388 YNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNGNWIGDYGALEL 447
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+K +L +L+L N I + L G L SL L GI D+G L L L+LS
Sbjct: 448 AKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARHPRLTTLDLS 507
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
++G+ G RHL+ L ++LS I L+ ++L +LN+ I + G +L
Sbjct: 508 RNRIGAEGARHLAQSATLAELDLSQNRIGPDGAEALSQSTALITLNVSHNAIGEAGARSL 567
Query: 395 TSLTGLTHLDLFGARITDSGAAYL 418
LT LD I + GA L
Sbjct: 568 ADSASLTSLDARRNGIGEDGAKVL 591
>gi|320167107|gb|EFW44006.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 98/204 (48%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
T L LT L +T+ D+ + L SL YL+L Q++ F+ + +L L+L
Sbjct: 102 FTGLTALTALFFAYNQITSIPADTFTGLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSL 161
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G N+IT GLT L +L+L + I TGL L CL Q+ S
Sbjct: 162 GPNQITSIPADTFTGLTALTTLSLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGA 221
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+G+T+L ++L I+ S AGL++L L+L +IT + A T LTGLT L L
Sbjct: 222 FTGMTSLTYLSLYLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYL 281
Query: 406 FGARITDSGAAYLRNFKNLRSLEI 429
G +IT ++ N L +L +
Sbjct: 282 DGNQITSIPSSSFTNLTALTALAL 305
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 112/255 (43%), Gaps = 1/255 (0%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+T+ ++ + L +L YL+L Q++ F+ + +L L +N+IT GL
Sbjct: 70 ITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFTGL 129
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T+L L+L + + TGL L L L Q+ S +GLT L +++L
Sbjct: 130 TSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQNNQ 189
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
I+ S GL++L L + QIT A T +T LT+L L+ +IT A
Sbjct: 190 ITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFAGL 249
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
L L + +T V L+ LT L L N +T + LT L +L + N+
Sbjct: 250 TALTYLSLFNNKITSIPVGAFTGLTGLTDLYLDGN-QITSIPSSSFTNLTALTALALQNN 308
Query: 482 RITSAGLRHLKPLKN 496
IT+ K L N
Sbjct: 309 PITTLPPGLFKGLPN 323
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 112/263 (42%), Gaps = 11/263 (4%)
Query: 226 LTSLQKLTLLNLE-----GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
T L LT L+L+ G P A L+AL +LF+ Q++ + F+ + SL
Sbjct: 78 FTGLTALTYLSLQYNQITGIP--AGTFTGLTALTALFFA---YNQITSIPADTFTGLTSL 132
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L+L N++T GLT L SL+L I TGL L L L + Q+ S
Sbjct: 133 TYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQNNQITS 192
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+GLT L + I+ G++SL L+L +IT A LT L
Sbjct: 193 ISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFAGLTAL 252
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
T+L LF +IT L L + G +T +L++LT L L QN +T
Sbjct: 253 TYLSLFNNKITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALAL-QNNPIT 311
Query: 461 DKTLELISGLTGLVSLNVSNSRI 483
L GL ++L+ N +
Sbjct: 312 TLPPGLFKGLPNGLALSNPNPYL 334
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 99/243 (40%), Gaps = 6/243 (2%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L L N IT GLT L L+L I TGL L L + Q+ S
Sbjct: 63 LTLDLNSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIP 122
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+GLT+L ++L ++ S GL++L SL+L QIT T LT LT
Sbjct: 123 ADTFTGLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTT 182
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L L +IT L L +T ++SLT L+L N +T
Sbjct: 183 LSLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLN-KITSI 241
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
+ +GLT L L++ N++ITS + L L L L+ N I + S N
Sbjct: 242 SANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLD-----GNQITSIPSSSFTN 296
Query: 523 LVS 525
L +
Sbjct: 297 LTA 299
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 122/309 (39%), Gaps = 55/309 (17%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N+IT+ AF GL L L L+ + T I G GL L +L + N IT
Sbjct: 68 NSITSISANAFTGLTALTYLSLQYNQITGIPAG--TFTGLTALTALFFAY-NQITSIPAD 124
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+GLT+L L + ++VT SIS F T L LT
Sbjct: 125 TFTGLTSLTYLSLQNNQVT----------SISGTAF----------------TGLTALTS 158
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L+L +T+ D+ + L +L L+L Q++ F+ + +L L G N+IT
Sbjct: 159 LSLGPNQITSIPADTFTGLTALTTLSLQNNQITSISGTAFTGLTALTCLYFGSNQITSIP 218
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
G+T+L L+L I T + ++ L+ LT L
Sbjct: 219 AGAFTGMTSLTYLSLYLNKI---------------------TSISANAFAGLTALTYLSL 257
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
N T I G+ L GL+ L LD QIT ++ T+LT LT L L IT
Sbjct: 258 FNNKITSIPVGAFTGLTGLTDLY---LDGNQITSIPSSSFTNLTALTALALQNNPITTLP 314
Query: 415 AAYLRNFKN 423
+ N
Sbjct: 315 PGLFKGLPN 323
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ + GL+ LT+LS + NN IT+ AF GL L L + T I G
Sbjct: 165 QITSIPADTFTGLTALTTLSLQ-NNQITSISGTAFTGLTALTCLYFGSNQITSIPAGA-- 221
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
G+ L L++ + N IT +GLT L L + +K+T + GL+ + ++
Sbjct: 222 FTGMTSLTYLSL-YLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY 280
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
+ + I + T+L LT L L+ P+T
Sbjct: 281 LDGNQITSI--PSSSFTNLTALTALALQNNPIT 311
>gi|28555894|emb|CAD45029.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare]
Length = 1262
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 207/428 (48%), Gaps = 12/428 (2%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLER 140
NL+++D + C ++ + E L NL L+ +N + + ++F L NL L+L
Sbjct: 755 NLRTIDLSGCKKL-ETFPESFGSLENLQILNL--SNCFELESLPESFGSLKNLQTLNLVE 811
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C ++ +L GL L++L+ C+ + +S + L GL NL++L++S V D+ ++ L
Sbjct: 812 CKKLESLPESLGGLKNLQTLDFSVCHKL-ESVPESLGGLNNLQTLKLS---VCDNLVSLL 867
Query: 201 KGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
K L S+ ++ + S +L L L SL+ L +LNL C + +SL L +L L
Sbjct: 868 KSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTL 927
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
N++ C + + +L L+L + L L NLE+LNL C +
Sbjct: 928 NISWCTELVFLPKNLGNLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLP 987
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+L GL NL+ L+L S L GL NL+++ LSF + L GL +L++L
Sbjct: 988 ESLGGLQNLQTLDLLVCHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTL 1047
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
L ++ +L SL L L L S L + KNL +L + ++
Sbjct: 1048 TLSVCDKLESLPESLGSLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIP 1107
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLR 498
+ + L +L +LNLS NC + + + L L +L +S +R+ S ++L LKNL+
Sbjct: 1108 ESVGSLENLQILNLS-NCFKLESIPKSLGSLKNLQTLILSWCTRLVSLP-KNLGNLKNLQ 1165
Query: 499 SLTLESCK 506
+L L CK
Sbjct: 1166 TLDLSGCK 1173
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 194/428 (45%), Gaps = 14/428 (3%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQ+LDF+ C ++ + E L GL+NL +L + + + +K+ L NL LDL C
Sbjct: 827 NLQTLDFSVCHKL-ESVPESLGGLNNLQTLKLSVCDNLVSL-LKSLGSLKNLQTLDLSGC 884
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCIT-DSDMKPLSGLTNLKSLQIS-CSKVT--DSGI 197
++ +L L L+ LN+ NC +S + L L NL++L IS C+++ +
Sbjct: 885 KKLESLPESLGSLENLQILNLS--NCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNL 942
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
LK L + S ++L L L SL+ L LNL C + +SL L +L
Sbjct: 943 GNLKNLPRLDL-----SGCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQ 997
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L+L C + E + +L+ L L F + L GL NL++L L C +
Sbjct: 998 TLDLLVCHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVCDKLES 1057
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
+L L NL L+L S L + NL ++NLS + + L +L+
Sbjct: 1058 LPESLGSLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIPESVGSLENLQ 1117
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
LNL ++ +L SL L L L S L N KNL++L++ G ++
Sbjct: 1118 ILNLSNCFKLESIPKSLGSLKNLQTLILSWCTRLVSLPKNLGNLKNLQTLDLSGCKKLES 1177
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
+ L +L LNLS NC + E++ L L +LN+ + L LK+L
Sbjct: 1178 LPDSLGSLENLQTLNLS-NCFKLESLPEILGSLKKLQTLNLFRCGKLESLPESLGSLKHL 1236
Query: 498 RSLTLESC 505
++L L C
Sbjct: 1237 QTLVLIDC 1244
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 185/426 (43%), Gaps = 34/426 (7%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLER 140
NLQ+LD ++C ++ + E L + NL L+ +N + + ++ L ++ LDL
Sbjct: 659 NLQTLDLSWCEKL-ESLPESLGSVQNLQRLNL--SNCFELEALPESLGSLKDVQTLDLSS 715
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY 199
C ++ +L L +++L++ C + S K L L NL+++ +S C K+ ++
Sbjct: 716 CYKLESLPESLGSLKNVQTLDLSRCYKLV-SLPKNLGRLKNLRTIDLSGCKKLETFPESF 774
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
SL+ L +LNL C + +S +L +L L
Sbjct: 775 ---------------------------GSLENLQILNLSNCFELESLPESFGSLKNLQTL 807
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
NL C+ + E + +L+ L+ + L GL NL++L L C L
Sbjct: 808 NLVECKKLESLPESLGGLKNLQTLDFSVCHKLESVPESLGGLNNLQTLKLSVCDNLVSLL 867
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+L L NL+ L+LS + S L L NL+ +NLS + L L +L++L
Sbjct: 868 KSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTL 927
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
N+ L +L L LDL G +S L + +NL +L + ++
Sbjct: 928 NISWCTELVFLPKNLGNLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLP 987
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
+ + L +L L+L C+ + E + GL L +L +S + L LKNL++
Sbjct: 988 ESLGGLQNLQTLDLLV-CHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQT 1046
Query: 500 LTLESC 505
LTL C
Sbjct: 1047 LTLSVC 1052
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 130/281 (46%), Gaps = 1/281 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+T L KL LNL G + S+ L SL +L+L+ C + + +L+ L+L
Sbjct: 606 ITRLSKLHYLNLSGSRGISEIPSSVGKLVSLVHLDLSYCTNVKVIPKALGILRNLQTLDL 665
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+ E + L + NL+ LNL +C + +L L +++ L+LS S
Sbjct: 666 SWCEKLESLPESLGSVQNLQRLNLSNCFELEALPESLGSLKDVQTLDLSSCYKLESLPES 725
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L L N+++++LS + L L +L++++L + +T + SL L L+L
Sbjct: 726 LGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLENLQILNL 785
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+S + KNL++L + ++ + + L +L L+ S C+ + E
Sbjct: 786 SNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFSV-CHKLESVPE 844
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
+ GL L +L +S + L+ L LKNL++L L CK
Sbjct: 845 SLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCK 885
>gi|71650734|ref|XP_814059.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878999|gb|EAN92208.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 934
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 127/487 (26%), Positives = 215/487 (44%), Gaps = 39/487 (8%)
Query: 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
CAL+DL L Y V ++ M S+ + L + L G +S L L+ + L+ LD +
Sbjct: 371 CALRDLDLS-YTQVTEEGMYRDVSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGY 428
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGL 148
++D L LR L L + IT+ +K G + +L +L+L + GL
Sbjct: 429 S-SVTDDSLTALRFCPELAKLDLQWCGRITS--LKCLVGALCDSLRELNLTETSVTDEGL 485
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
V LK LE ++++ C ++D ++ L LT L+ + + ++VT+ G+ L V
Sbjct: 486 VPLKYFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRV 543
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
+ + RL FL +LQ+L ++L CPVT + L SL L L C
Sbjct: 544 MRM--RQCYRLTDAS-FLGALQQLEEVDLSDCPVTNEGIAELFGARSLRKLRLQSCHAVS 600
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCN 327
D + L +L+L + +E V L L +L + S + N L
Sbjct: 601 D-VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNTALFLPR 659
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINL----SFTGISDGSLRKLAGLSSLKSLNLDA 383
LK L+LS T+V S L + LE+++L + T + L+ +G + DA
Sbjct: 660 LKRLDLSTTKVTSDALSFVRMCPILETLSLRGCKNITHLDFLILQPSSGAGVCAIVPRDA 719
Query: 384 R-------------QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
+ D G + + ++T + I + AA + + LR L +
Sbjct: 720 EPHDTVGDTIAGKEKNPDDGPSPIETMT------INDGVIKSTAAAAVVDRHRLRELTLS 773
Query: 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
G+TD G++ ++ L L L+ N+TD + ++ L+ L L++S + +T +GL
Sbjct: 774 DTGVTDDGLRALQYCPGLERLRLAHCKNVTD--VAVLRWLSQLKELDLSATGVTGSGLAK 831
Query: 491 LKPLKNL 497
L P NL
Sbjct: 832 LSPSGNL 838
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 131/272 (48%), Gaps = 22/272 (8%)
Query: 265 QLSDDGCEKFS------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+LS +GC K + L+VL+LG++ +TD+ L L+ L L+L CG
Sbjct: 400 RLSLEGCRKIESLQWLRALNQLRVLDLGYSSVTDDSLTALRFCPELAKLDLQWCGRITSL 459
Query: 319 LVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSL 376
+ LC+ L+ L L++T V GL L LE I+L G +SD ++ L L+ L
Sbjct: 460 KCLVGALCDSLRELNLTETSVTDEGLVPLKYFAALEWISLEGCGAVSDVNV--LCNLTRL 517
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLT 435
+ +++ ++T+ G+ +L+ L + + R+TD A++L + L +++ +T
Sbjct: 518 REVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTD--ASFLGALQQLEEVDLSDCPVT 575
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
+ G+ + SL L L Q+C+ + + GL L+ L++ ++ + G L
Sbjct: 576 NEGIAELFGARSLRKLRL-QSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCP 633
Query: 496 NLRSLTLESCKV-------TANDIKRLQSRDL 520
L +L + S V TA + RL+ DL
Sbjct: 634 QLMTLIMHSVLVHSLQQWNTALFLPRLKRLDL 665
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 132/310 (42%), Gaps = 37/310 (11%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG------CEKFSKIG- 278
++ L KL+ L+LEGC + L L AL L L+L ++DD C + +K+
Sbjct: 392 VSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGYSSVTDDSLTALRFCPELAKLDL 450
Query: 279 ------------------SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
SL+ LNL +TDE LV LK LE ++L+ CG +
Sbjct: 451 QWCGRITSLKCLVGALCDSLRELNLTETSVTDEGLVPLKYFAALEWISLEGCG----AVS 506
Query: 321 NLTGLCNLKCLELSD---TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSL 376
++ LCNL L D T+V + G+ LS L + + ++D S L L L
Sbjct: 507 DVNVLCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDASF--LGALQQL 564
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ ++L +T+ G+A L L L L S +L ++L L++ + +
Sbjct: 565 EEVDLSDCPVTNEGIAELFGARSLRKLRLQSCHAV-SDVNFLGGLEHLMLLDLHHTTVDE 623
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
G + L L + + + L L L++S +++TS L ++
Sbjct: 624 EGSVGLAQCPQLMTLIMHSVLVHSLQQWNTALFLPRLKRLDLSTTKVTSDALSFVRMCPI 683
Query: 497 LRSLTLESCK 506
L +L+L CK
Sbjct: 684 LETLSLRGCK 693
>gi|290998760|ref|XP_002681948.1| predicted protein [Naegleria gruberi]
gi|284095574|gb|EFC49204.1| predicted protein [Naegleria gruberi]
Length = 391
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 155/359 (43%), Gaps = 32/359 (8%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGG 147
N ++ D L+++ L LTSL I + A L L +LD+ + G
Sbjct: 53 NKKFKVDDETLQYIGELKQLTSLHIH---GIGIDNVWDIADLKQLTELDISDNKINSEGA 109
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
V + L L+I N D K +S L L L +S +++ + + Y+
Sbjct: 110 RVISESFKHLTKLDI--SNNTIDVGTKYISQLKQLTYLDVSNNEIEEEDVKYI------- 160
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
++ LT L+++ + +S L + L++ +
Sbjct: 161 -------------------GNMNGLTSLSIQYNHIGNIGAQYISGLKQITTLSIYSGDIG 201
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D+G + S++ L LN+GFN I +H+ L L L++ + G GL +T L
Sbjct: 202 DEGAKYISEMKQLTNLNIGFNNINIRGAIHISKLKQLTELSISANNFGSGGLKYITQLKQ 261
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L L D+++ S G++++S + L ++LS+ I+ ++ L L L L + +
Sbjct: 262 LTKLYCCDSEIDSEGVKYISEMKQLTDVDLSYNNINSEGVKYLNKLKKLTKLYIGGNDLG 321
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
+ G ++ L LTHLD+ ++D G + K L SL I ++ GV++I+ ++
Sbjct: 322 NKGAMYISRLNQLTHLDICRNNVSDEGFKSISKMKQLSSLFISENTISGEGVEYIRKMT 380
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 131/277 (47%), Gaps = 2/277 (0%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
V S + LT L++ + +S L L YL+++ ++ ++ + + L L
Sbjct: 111 VISESFKHLTKLDISNNTIDVGT-KYISQLKQLTYLDVSNNEIEEEDVKYIGNMNGLTSL 169
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
++ +N I + ++ GL + +L++ S IGDEG ++ + L L + + G
Sbjct: 170 SIQYNHIGNIGAQYISGLKQITTLSIYSGDIGDEGAKYISEMKQLTNLNIGFNNINIRGA 229
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
H+S L L +++S G L+ + L L L +I G+ ++ + LT +
Sbjct: 230 IHISKLKQLTELSISANNFGSGGLKYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLTDV 289
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
DL I G YL K L L I G L + G +I L+ LT L++ +N N++D+
Sbjct: 290 DLSYNNINSEGVKYLNKLKKLTKLYIGGNDLGNKGAMYISRLNQLTHLDICRN-NVSDEG 348
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ IS + L SL +S + I+ G+ +++ + S+
Sbjct: 349 FKSISKMKQLSSLFISENTISGEGVEYIRKMTQAASI 385
>gi|334145937|ref|YP_004508864.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
gi|333803091|dbj|BAK24298.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
Length = 1384
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 159/498 (31%), Positives = 239/498 (47%), Gaps = 85/498 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FR 114
+SL +DLSG+ + + L L ++L LD +SD + L GL +LTSL+ +
Sbjct: 131 ASLTELDLSGNQI--AKLEGLNALTSLTRLD------LSDNQIAKLEGLDSLTSLTELYL 182
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I ++ L +L +LDL R +I L L L L LN+ N I ++
Sbjct: 183 SGNQIAK--LEGLDHLTSLTRLDL-RGNQI-AKLEGLDHLTSLTGLNLS-GNQI--RKLE 235
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGL-SISSV--IFILCSMIIRLFCLHVFLTSLQK 231
L LT+L L +S ++ IA L+GL +++S+ +++ + I +L L+ +L
Sbjct: 236 GLDSLTSLTELYLSGNQ-----IAKLEGLNALTSLTELYLSGNQIAKLEGLN----ALTS 286
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
LT LNL G ++ L+SL++L SL LNL+ Q++ E + + SL L+L N+I
Sbjct: 287 LTGLNLSGNQISK--LESLASLTSLTRLNLSDNQIA--KLEGLNALTSLTGLDLRGNQIA 342
Query: 292 D-ECLVHLKGLT----------NLESLN-------LDSCGIGDEGLVNLTGLCNLKCLEL 333
E L HL LT LE L+ LD G L +L L +L L+L
Sbjct: 343 KLEGLDHLTSLTRLDLRGNQIRKLEGLDSLTSLTQLDLSGNQISKLESLNALTSLTELDL 402
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISD-----------------GSLRKLAGLSSL 376
SD Q+ + L L+ LT+L ++LS I+ + KL GL L
Sbjct: 403 SDNQIAT--LESLASLTSLTELDLSDNQIAKLEGLNALTSLTGLDLRGNQIAKLEGLDHL 460
Query: 377 KSL-NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
SL LD R L L SLT LT LDL G +I S L +L L++ +
Sbjct: 461 TSLTRLDLRGNQIRKLEGLDSLTSLTQLDLSGNQI--SKLESLNALTSLTELDLSDNQI- 517
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
A ++ + L+SLT L+LS N LE ++ LT L L++S+++I A L LK L
Sbjct: 518 -ATLEGLNALTSLTRLDLSDN---QIAKLESLASLTSLTRLDLSDNQI--AKLEGLKDLT 571
Query: 496 NLRSLTLESCKVTANDIK 513
L+ L V+ NDI+
Sbjct: 572 QLQEL-----DVSGNDIQ 584
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 151/326 (46%), Gaps = 52/326 (15%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L LT L+L G + A L+ L+AL SL L+L+ Q+ E + SL L+L
Sbjct: 83 LDHLASLTELDLSGNQI--AKLEGLNALTSLTRLDLSYNQIR--KFEGLDHLASLTELDL 138
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGS-SGL 343
N+I L L LT+L L+L I EGL +LT L L LS Q+ GL
Sbjct: 139 SGNQIAK--LEGLNALTSLTRLDLSDNQIAKLEGLDSLTSLTELY---LSGNQIAKLEGL 193
Query: 344 RHLSGLT----------NLESIN--LSFTGI--SDGSLRKLAGLSSLKSLN---LDARQI 386
HL+ LT LE ++ S TG+ S +RKL GL SL SL L QI
Sbjct: 194 DHLTSLTRLDLRGNQIAKLEGLDHLTSLTGLNLSGNQIRKLEGLDSLTSLTELYLSGNQI 253
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
L L +LT LT L L G +I L +L L + G + + ++ + L+
Sbjct: 254 A--KLEGLNALTSLTELYLSGNQIAKLEG--LNALTSLTGLNLSGNQI--SKLESLASLT 307
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHL-------------K 492
SLT LNLS N LE ++ LT L L++ ++I GL HL +
Sbjct: 308 SLTRLNLSDN---QIAKLEGLNALTSLTGLDLRGNQIAKLEGLDHLTSLTRLDLRGNQIR 364
Query: 493 PLKNLRSLT-LESCKVTANDIKRLQS 517
L+ L SLT L ++ N I +L+S
Sbjct: 365 KLEGLDSLTSLTQLDLSGNQISKLES 390
>gi|384252696|gb|EIE26172.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 663
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 23/225 (10%)
Query: 298 LKGLTNLESLNL--DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLES 354
LK LT L SL + DS + L+ L +L+ L L++ + GL +LS LT+L
Sbjct: 245 LKSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLRQ 304
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+ L G+++G LR L+ L+SL++ DA ++TDTGL L+SLTGLTHLD
Sbjct: 305 LRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDF-------C 357
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
++ R+ +T+AGV + L++L LNL+ + +T + L ++ T L
Sbjct: 358 SPSHRRD-----------EDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATAL 406
Query: 474 VSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L++S + + G+ L L NLRSL L+ +++ +++L S
Sbjct: 407 TCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGS 451
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 157/352 (44%), Gaps = 40/352 (11%)
Query: 102 LRGLSNLTSLSFRRNNAITAQG---MKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMK 156
L GLS L L F NA+ G + + L L +L++ + G LK L K
Sbjct: 194 LGGLSRLQHLQF---NAVAFDGRTLISKLSSLQGLRQLEMANVVGAYPAEGDAFLKSLTK 250
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
L SL ++ N + + P+ L+ L+SLQ LS++ + +L +
Sbjct: 251 LSSLRMR--NDSATAKLPPMHCLSELRSLQ---------------ELSLTEHLHLLLPGL 293
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
L L T L++L L+ + C +L+ L SL + R ++D G S
Sbjct: 294 TNLSAL----TDLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFR--VTDTGLHHLSS 347
Query: 277 IGSLKVLNL------GFNEITDECLVHLKGLTNLESLNLD-SCGIGDEGLVNLTGLCNLK 329
+ L L+ +IT+ + L LTNL SLNL + EGL L L
Sbjct: 348 LTGLTHLDFCSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADATALT 407
Query: 330 CLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
CL+LS +G +G + L+ LTNL S+ L T +S+ +++L L++L SL L I D
Sbjct: 408 CLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLTALTSLGLAWCAIDD 467
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 439
AAL LT L LD+ +T++G L R +L + G T G+
Sbjct: 468 EAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGCPATSIGI 519
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ-------ISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VTD+GL HL + L LDF C I++ G+ L L+NL SL+ ++ +TA
Sbjct: 337 VTDTGLHHLSSLTGLTHLDF--CSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTA 394
Query: 122 QGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ A L LDL GG+ L L L SL ++ +++ ++ L LT
Sbjct: 395 EGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQ-LSNEHVQQLGSLT 453
Query: 181 NLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
L SL ++ + D A L L+ ++ + C M C ++ L + +EG
Sbjct: 454 ALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCPMTNAGLC--QLSRAMPDLAIFAVEG 511
Query: 240 CPVTA 244
CP T+
Sbjct: 512 CPATS 516
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 11/201 (5%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-----RRNNAITAQGMKAFAGLINLVK 135
+ LQSL +++D GL HL L+ LT L F RR+ IT G+ A + L NL
Sbjct: 324 TKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPSHRRDEDITNAGVAALSALTNLRS 383
Query: 136 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L + + GL L L L++ + L+ LTNL+SL + +++++
Sbjct: 384 LNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSN 443
Query: 195 SGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS-A 252
+ L L +++S+ C++ L L KL L++ CP+T A L LS A
Sbjct: 444 EHVQQLGSLTALTSLGLAWCAIDDE---AAAALAPLTKLADLDVRYCPMTNAGLCQLSRA 500
Query: 253 LGSLFYLNLNRCQLSDDGCEK 273
+ L + C + G +
Sbjct: 501 MPDLAIFAVEGCPATSIGIWR 521
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Query: 314 IGDEGLVNLTGLCNLKCLELS----DTQVGSSGLRHLSGLTNLESINL--SFTGISDGSL 367
I + V L GL L+ L+ + D + S L L GL LE N+ ++ D L
Sbjct: 186 ITERDAVLLGGLSRLQHLQFNAVAFDGRTLISKLSSLQGLRQLEMANVVGAYPAEGDAFL 245
Query: 368 RKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLT---HLDLFGARITDSGAAYLRNFK 422
+ L LSSL+ N A+ L+ L SL L+ HL L +T+ L
Sbjct: 246 KSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTN-----LSALT 300
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV---S 479
+LR L + G+T+ ++ L+ L L++ +TD L +S LTGL L+ S
Sbjct: 301 DLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPS 360
Query: 480 NSR---ITSAGLRHLKPLKNLRSLTLE-SCKVTANDIKRL 515
+ R IT+AG+ L L NLRSL L +VTA + L
Sbjct: 361 HRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFL 400
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L S++L+G S+VT GL L D + L LD + GG++ L L+NL SL +R
Sbjct: 379 TNLRSLNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQR 438
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
++ + ++ L L L L C L L KL L++++C +T++ +
Sbjct: 439 TQ-LSNEHVQQLGSLTALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCP-MTNAGLCQ 496
Query: 176 LS-GLTNLKSLQISCSKVTDSGIAYL 200
LS + +L + T GI L
Sbjct: 497 LSRAMPDLAIFAVEGCPATSIGIWRL 522
>gi|198456933|ref|XP_001360491.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
gi|198135799|gb|EAL25066.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
Length = 529
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 169/397 (42%), Gaps = 112/397 (28%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNT 294
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 295 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEA 354
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G
Sbjct: 355 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 414
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
I+S+ C I S Q LT + L L L+LN+
Sbjct: 415 GINSLDVSFCDKI-----------SDQALTHIA--------------QGLYRLRSLSLNQ 449
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL 322
CQ++D G K + K L LE+LN+ C I D+GL L
Sbjct: 450 CQITDQGMVKIA-----------------------KSLQELENLNIGQCSRITDKGLQTL 486
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 487 AEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 19/222 (8%)
Query: 300 GLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-G 348
GL L LNL SC I D+G+ +L G L+ L L D Q + L H++ G
Sbjct: 302 GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEALGHIAQG 361
Query: 349 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL 405
LT+L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+
Sbjct: 362 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 421
Query: 406 -FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK 462
F +I+D ++ + LRSL + +TD G VK K L L LN+ Q +TDK
Sbjct: 422 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDK 481
Query: 463 TLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 482 GLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 281
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-------- 398
NLE N++ TG+ L GL L+ LNL + I+D G+ L +
Sbjct: 282 NLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 337
Query: 399 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L HL L R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 338 QLEHLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 396
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 397 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453
>gi|157877504|ref|XP_001687069.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130144|emb|CAJ09455.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 1207
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 146/289 (50%), Gaps = 17/289 (5%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L SL++L L++ P+ A L +L+ SL + L+RC+ E ++ L+ L+L
Sbjct: 426 LGSLKQLRCLHILYTPLHEAFLQALTTCSSLECIILHRCR-GVRSLEPLRRLQHLQSLSL 484
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGL 343
+TD L+ L G T L L LD C I D L NL G L+ L + T + ++ +
Sbjct: 485 HGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLLSNANM 542
Query: 344 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+H+ L ++L S ++D + L L++L+ LNL +TD G +AL + L
Sbjct: 543 QHIGLCDKLVELHLQSLRQLTDIGV--LKDLTALRVLNLSDNLVTDEGCSALHCMPSLQR 600
Query: 403 LDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L+L R IT AA+ R L SL++ +TDAGV+ +++ + L LNL C
Sbjct: 601 LNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQECTDLRYLNL---CG 657
Query: 459 LTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESC 505
++ + L + ++ L LN+ +R+T H P +NLR L+L C
Sbjct: 658 CSELRRLSWLQKMSSLRWLNLGGTRVTDEETNHYLPCARNLRFLSLSDC 706
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 140/334 (41%), Gaps = 50/334 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 479 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 535
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ M+ LV+L L+ +L+ L +D+ L
Sbjct: 536 LLSNANMQHIGLCDKLVELHLQ----------SLRQL----------------TDIGVLK 569
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTS---LQKLT 233
LT L+ L +S + VTD G + L + S+ + C I L F S + +L
Sbjct: 570 DLTALRVLNLSDNLVTDEGCSALHCMPSLQRLNLAFCRCITSLAA--AFTASGRWMHRLL 627
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRC----QLSDDGCEKFSKIGSLKVLNLGFNE 289
L++ +T A + + L YLNL C +LS K+ SL+ LNLG
Sbjct: 628 SLDVSHTNITDAGVQCMQECTDLRYLNLCGCSELRRLS-----WLQKMSSLRWLNLGGTR 682
Query: 290 ITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+TDE H L NL L+L C G L L L+ L L T V S L L
Sbjct: 683 VTDEETNHYLPCARNLRFLSLSDCS-GVRSLSFAVRLHQLEYLSLESTSVADSELPCLCH 741
Query: 349 LTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 381
L ++L S I D S L L +L LN+
Sbjct: 742 CRKLRYLSLESCVDIRDVS--PLCALPALLELNI 773
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 123/272 (45%), Gaps = 45/272 (16%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQK 231
++PL L +L+SL + VTD+ + L G + + ++ C I L L +L++
Sbjct: 470 LEPLRRLQHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLER 529
Query: 232 LTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 287
L + P T ++ +G L L+L QL+D G K + +L+VLNL
Sbjct: 530 LLM------PRTLLSNANMQHIGLCDKLVELHLQSLRQLTDIGVLK--DLTALRVLNLSD 581
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N +TDE L + +L+ LNL C +C+ +SG
Sbjct: 582 NLVTDEGCSALHCMPSLQRLNLAFC----------------RCITSLAAAFTASG----R 621
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGLTHL 403
+ L S+++S T I+D ++ + + L+ LNL + R+ L+ L ++ L L
Sbjct: 622 WMHRLLSLDVSHTNITDAGVQCMQECTDLRYLNLCGCSELRR-----LSWLQKMSSLRWL 676
Query: 404 DLFGARITDSGA-AYLRNFKNLR--SLEICGG 432
+L G R+TD YL +NLR SL C G
Sbjct: 677 NLGGTRVTDEETNHYLPCARNLRFLSLSDCSG 708
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 29/191 (15%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDG-----------------------SLRKLAGLSSLK 377
SG+R L L L +++ +T + + SL L L L+
Sbjct: 421 SGVRSLGSLKQLRCLHILYTPLHEAFLQALTTCSSLECIILHRCRGVRSLEPLRRLQHLQ 480
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGLT 435
SL+L +TDT L +LT T L L L R ITD ++L N + L L + L+
Sbjct: 481 SLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLLS 538
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
+A ++HI L L+L LTD + ++ LT L LN+S++ +T G L +
Sbjct: 539 NANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCMP 596
Query: 496 NLRSLTLESCK 506
+L+ L L C+
Sbjct: 597 SLQRLNLAFCR 607
>gi|290991127|ref|XP_002678187.1| predicted protein [Naegleria gruberi]
gi|284091798|gb|EFC45443.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 97/195 (49%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+ L KLT L+++ C + + A+ L L++N C L G K+ + L
Sbjct: 59 VIRELDKLTELHIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLG 118
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I+D + + +T L L+ IG EG +++ + NLK L L +G G++
Sbjct: 119 IRKNHISDSLALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVK 178
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
++SG+ L S+N+S I D ++ ++ + +L L++ + I D G ++ ++ LT LD
Sbjct: 179 YISGMKQLISLNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLD 238
Query: 405 LFGARITDSGAAYLR 419
+ +T G L+
Sbjct: 239 ISCNVLTQKGIKLLQ 253
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 56/257 (21%)
Query: 222 LHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
L ++ L++L LN+ C + ++ + L L L+++ C + + G +K IG++
Sbjct: 31 LRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTELHIDNCCIGEKGAKK---IGAM 87
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK----------- 329
+ L +L+++ CG+G +G+ + +C LK
Sbjct: 88 Q---------------------QLRTLSINGCGLGKKGVAS---VCKLKDMTKLGIRKNH 123
Query: 330 -----CLELSD-----------TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
LE+S +G G + +S +TNL+++ L F I ++ ++G+
Sbjct: 124 ISDSLALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGM 183
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
L SLN+ I D G+ +++ + LT L + I D GA Y+ NL L+I
Sbjct: 184 KQLISLNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNV 243
Query: 434 LTDAGVKHIKD-LSSLT 449
LT G+K +++ L+ LT
Sbjct: 244 LTQKGIKLLQESLNKLT 260
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 3/209 (1%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 355
+K L L+SL + S I E L + G L L L +SD +G+ G+ + L L +
Sbjct: 10 MKKLNQLKSLKIRSKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTEL 69
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
++ I + +K+ + L++L+++ + G+A++ L +T L + I+DS A
Sbjct: 70 HIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSLA 129
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+ L L+ + G K I +++L L L N ++ + ++ ISG+ L+S
Sbjct: 130 LEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFN-DIGKEGVKYISGMKQLIS 188
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLES 504
LN+S + I G++ + +KNL L++ S
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRS 217
>gi|290983780|ref|XP_002674606.1| predicted protein [Naegleria gruberi]
gi|284088197|gb|EFC41862.1| predicted protein [Naegleria gruberi]
Length = 232
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 1/226 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+ +LT L++ + A + + L +L LN+ LS +G E K+ L VLN+ FN
Sbjct: 1 MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I D ++ L+ L +L++ S I +EG +++ L L L+L+D ++ G ++L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L+ L+ +NL I D + ++ L +L LNL I + G+ ++ L LT L++
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
RI++ A + K L+ L + + G K + ++ L +L+LS
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLS 225
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 1/216 (0%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L L++GFN + D + LT L LN+ + EG ++ L L L ++ +G
Sbjct: 4 LTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIG 63
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G ++ L+ L +++++ I++ R ++ L L L+L+ +I G L L+
Sbjct: 64 DLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQ 123
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L L+L I D GA + +NL L + + + G+K I +L LT LN+SQN +
Sbjct: 124 LKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN-RI 182
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
+++ +LISG+ L L ++++I + G + L ++
Sbjct: 183 SNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEME 218
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
D G + L L L +++ + G + LT L +N++F GI D + LS
Sbjct: 16 DAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIGELSK 75
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
L +L++ + IT+ G +++ L LT LDL RI GA YL L+ L + +
Sbjct: 76 LTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLANYIQ 135
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
D G K + L +LT LNL++N + ++ ++ I L L LN+S +RI++ + + +K
Sbjct: 136 DKGAKSVSQLENLTELNLTRNS-IQNEGIKSIIELPLLTKLNISQNRISNEEAQLISGMK 194
Query: 496 NLRSLTLESCKVTANDIKRLQSRDL 520
L+ L ++ K+L +L
Sbjct: 195 QLKELVATHTQIDNEGAKKLHEMEL 219
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 28/229 (12%)
Query: 143 RIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+H + G L L LN+ N ++ + + LT L L I+ + + D G AY+
Sbjct: 13 RLHDAGAEIIGQLTTLTELNVAE-NFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIG 71
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
LS KLT L++ +T S+S L L L+L
Sbjct: 72 ELS--------------------------KLTNLSIASNFITEEGARSISKLKQLTILDL 105
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
N +++ G + ++ LK LNL N I D+ + L NL LNL I +EG+ +
Sbjct: 106 NDNRIACKGAQYLGELSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKS 165
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
+ L L L +S ++ + + +SG+ L+ + + T I + +KL
Sbjct: 166 IIELPLLTKLNISQNRISNEEAQLISGMKQLKELVATHTQIDNEGAKKL 214
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 5/165 (3%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L L +G + ++D ++I Q ++L ++++ + ++ G + + L L+ NF
Sbjct: 4 LTKLSIG-FNRLHDAGAEIIG-QLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN- 60
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I D G ++ LS LT+LS +N IT +G ++ + L L LDL G L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIA-SNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLG 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L +L+ LN+ N I D K +S L NL L ++ + + + GI
Sbjct: 120 ELSQLKKLNL-LANYIQDKGAKSVSQLENLTELNLTRNSIQNEGI 163
>gi|87311421|ref|ZP_01093541.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
3645]
gi|87285833|gb|EAQ77747.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
3645]
Length = 192
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
+E+SD V + L+ LS T L+ I L T ++D + L L L+ +NL ITD
Sbjct: 35 SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
GLA + L LT L + +TD+G A LR+ +LR L + LTDA ++HI +++SL
Sbjct: 95 GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154
Query: 450 LLNLSQNCNLTDKTL 464
L Q N+T+ L
Sbjct: 155 SFYLDQ-TNITEPGL 168
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+SI +S +S L+ L+ + L+ + LD + D A L +L L ++L A ITD
Sbjct: 34 DSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITD 93
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+G A + L L I LTDAG+ ++D SL L+L Q LTD LE I+ +
Sbjct: 94 AGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTP-LTDAALEHIAEINS 152
Query: 473 LVSLNVSNSRITSAGLRHL 491
L S + + IT GL L
Sbjct: 153 LESFYLDQTNITEPGLAKL 171
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
V+ A L LS L + L++ L+D + L+ +NL +ITD L + L
Sbjct: 43 VSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKL 102
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
L L + S + D G+ L +L+ L L T + + L H++ + +LES L T
Sbjct: 103 PQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTN 162
Query: 362 ISDGSLRKL 370
I++ L KL
Sbjct: 163 ITEPGLAKL 171
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S+ L+ + L + D L L L+ +NL I D GL + L L L +
Sbjct: 51 LSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKLPQLTQLRI 110
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
+ +G+ L +L ++L T ++D +L +A ++SL+S LD IT+ GLA
Sbjct: 111 GSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTNITEPGLAK 170
Query: 394 LTSLTGLTHL 403
L H+
Sbjct: 171 LIERRPQLHV 180
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L +L +L +NL +T A L ++ L L L + L+D G SL+ L+L
Sbjct: 75 LGALPELQFVNLPQADITDAGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHL 134
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
+TD L H+ + +LES LD I + GL L
Sbjct: 135 LQTPLTDAALEHIAEINSLESFYLDQTNITEPGLAKL 171
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L+ +L + L+ P+ L AL L ++NL + ++D G + +K+ L L
Sbjct: 50 LLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKLPQLTQLR 109
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G +TD + L+ +L L+L + D L ++ + +L+ L T + GL
Sbjct: 110 IGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTNITEPGLA 169
Query: 345 HL 346
L
Sbjct: 170 KL 171
>gi|149173875|ref|ZP_01852504.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
gi|148847405|gb|EDL61739.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
Length = 525
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 178/409 (43%), Gaps = 49/409 (11%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFR-----RNNAITAQGMKAFAGLINLVKLDLERCTRI-H 145
+ ++D L L+ L + +L+ R + N T G++ L L LDL ++
Sbjct: 77 LPLADDDLTVLKELPEVQTLTLRGVHTIKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTD 136
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G+ +L+ L +LE L++ C TD+ K L+ LT+L++L++ + +T + L L
Sbjct: 137 AGMRHLESLKQLEHLDLSGCRRFTDASGKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPE 196
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
+ + S ++ + L+K+ L LEG + L ++ + SL L + +
Sbjct: 197 LKHLAVKYSK--GMWLNENTIVPLEKMPLEELEGMLIKDENLPLIAQMKSLKSLPFEQDR 254
Query: 266 -LSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLE--SLNLDSCGIGDE--- 317
+ DD + I +K LN+ T + L+ L+ L LE S++L + GD
Sbjct: 255 SIKDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQLQALPELETLSISLGNSTEGDPLDR 314
Query: 318 -GLVNLT----------GLCNLKCLE--------------LSDTQVGSSGLRHLSGLTNL 352
GL+ L GL N+ LE + +Q + L +L ++ L
Sbjct: 315 SGLLALAKIPALKELGIGLVNVPILEAISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSRL 374
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNL--------DARQITDTGLAALTSLTGLTHLD 404
+ + + +SD L + SL+ ++ + + T L L +L L LD
Sbjct: 375 KDLTVQIALVSDDLWATLGQVKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLD 434
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
L G +TD G YL + L L + +T+AG+ ++ LS L L+
Sbjct: 435 LNGFPVTDEGLGYLGQCRTLERLGLNNAPITNAGLLQLRHLSQLKKLSF 483
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 164/394 (41%), Gaps = 32/394 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+ G+ TD GL ++ L+ LD + Q++D G+ HL L L L T
Sbjct: 104 IKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLKQLEHLDLSGCRRFTDAS 163
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-------NCITDSDMKPL 176
K+ A L +L L L + + L L L +L+ L +K+ N I + PL
Sbjct: 164 GKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSKGMWLNENTIVPLEKMPL 223
Query: 177 SGLTNL----KSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
L + ++L + + + + + SI + I ++ L++ LT
Sbjct: 224 EELEGMLIKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSD 283
Query: 233 T--LLNLEGCPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-N 288
T L+ L+ P L++LS +LG+ + L G +KI +LK L +G N
Sbjct: 284 TSQLIQLQALPE----LETLSISLGN----STEGDPLDRSGLLALAKIPALKELGIGLVN 335
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
E + H + L +LN+D+ L L + LK L + V L
Sbjct: 336 VPILEAISHCTQVQKL-NLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQ 394
Query: 349 LTNLESINLSF--------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+ +LE I+ ++ S SL++L L LK L+L+ +TD GL L L
Sbjct: 395 VKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTL 454
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L L A IT++G LR+ L+ L G +
Sbjct: 455 ERLGLNNAPITNAGLLQLRHLSQLKKLSFYGSKI 488
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 407 GARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G TD G Y+ K LR L++ LTDAG++H++ L L L+LS TD + +
Sbjct: 106 GNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLKQLEHLDLSGCRRFTDASGK 165
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
++ LT L +L + + +T L L L L+ L ++ K
Sbjct: 166 SLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSK 206
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+DL+G VTD GL +L C L+ L N I++ GL LR LS L LSF
Sbjct: 433 LDLNGFPVTDEGLGYLGQCRTLERLGLNNA-PITNAGLLQLRHLSQLKKLSF 483
>gi|66807643|ref|XP_637544.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
gi|60465980|gb|EAL64047.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
Length = 722
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 200/413 (48%), Gaps = 42/413 (10%)
Query: 47 KWMDVIASQGSSLLSVDLSG--SDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLR 103
K MD I + G+ + S+DLS + V + L++ K + L ++ F C ++D GL+ R
Sbjct: 309 KKMDQIVASGARIYSLDLSHQFAVVNNDFLLNCFKYMAELSNVYFRNCENLNDIGLQIFR 368
Query: 104 GLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLE 158
+ NL +L R +N IT G++ GL+NL +L L CT I GL L L+KL+
Sbjct: 369 QPNFEKNLKTLDLR-DNRITDVGIRNLKGLLNLEELYLGSTGCTDI--GLALLCNLLKLK 425
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
+L++ CN ITDS M + T LK L +S ++VTD GI + L ++I + S +R
Sbjct: 426 TLDVSKCN-ITDSSMDIICRFTELKFLYLSGTQVTDKGINTISKL--PNLIQLYVSNCLR 482
Query: 219 LFCLHVFLTSL--QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFS 275
+ +F + + L LL++ + L L +L L R ++D +
Sbjct: 483 ITNQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLN 542
Query: 276 KIGSLKVLNLG-FNEITDECLVHLKGLTNLESLN---LDSCGIGDEGLVN-LTGLCNLKC 330
+ +L+ L+L + I+D L LTNL+SL L + I D ++N + + +L+
Sbjct: 543 SLSNLRKLDLSDYRNISD-----LSPLTNLQSLTELLLSNTKISDNSIINSIKTMDSLEV 597
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L+ T+V + G+ L L S T I SL L + SL+ L++ ITD
Sbjct: 598 LSLNKTEVTTEGVSQLVNLNLTSLSLSS-TKIDGKSLYYLGQMKSLQKLDISFNDITDNS 656
Query: 391 LAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
+ L + L+H+DL G TD+ RSL + + VK+I
Sbjct: 657 MDYLKPIADTLSHIDLRG---TDT----------FRSLHMFNEKIVRPPVKNI 696
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 145/340 (42%), Gaps = 72/340 (21%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+Q+L L + +T +D + A G+ Y S D +F+ + + +LN
Sbjct: 293 IQRLIELMVSSNRLTRKKMDQIVASGARIY--------SLDLSHQFAVVNNDFLLN---- 340
Query: 289 EITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
C ++ L+N+ N ++ IG + NLK L+L D ++ G+R+L
Sbjct: 341 -----CFKYMAELSNVYFRNCENLNDIGLQIFRQPNFEKNLKTLDLRDNRITDVGIRNLK 395
Query: 348 GLTNLESINLSFTG------------------------ISDGSLRKLAGLSSLKSLNLDA 383
GL NLE + L TG I+D S+ + + LK L L
Sbjct: 396 GLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNITDSSMDIICRFTELKFLYLSG 455
Query: 384 RQITDTGLAALTSLTGLTH--------------------------LDLFGARITDSGAAY 417
Q+TD G+ ++ L L LD+F +I +G
Sbjct: 456 TQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQ 515
Query: 418 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
LR FK L+ L + G + DA + H+ LS+L L+LS N++D L ++ L L L
Sbjct: 516 LRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSDYRNISD--LSPLTNLQSLTEL 573
Query: 477 NVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTANDIKRL 515
+SN++I+ + +K + +L L+L +VT + +L
Sbjct: 574 LLSNTKISDNSIINSIKTMDSLEVLSLNKTEVTTEGVSQL 613
>gi|290996013|ref|XP_002680577.1| predicted protein [Naegleria gruberi]
gi|284094198|gb|EFC47833.1| predicted protein [Naegleria gruberi]
Length = 395
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 140/325 (43%), Gaps = 50/325 (15%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK------ 281
++LT+LN+ P+ +++ L L L++ C++ ++G + SK+G L
Sbjct: 51 KFKQLTILNISDNPIMKGV-EAIGLLKQLTELDVRYCRMGEEGSKIISKLGQLTNLDISH 109
Query: 282 ------------------VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
+L + +N++ ++ L L L++ I DEG ++
Sbjct: 110 NSIRSKGFKFICEMKQLIILKVQYNKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIG 169
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L L L++S + + G++HLS L L +N+S+ + + + + + L LN+
Sbjct: 170 QLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGG 229
Query: 384 RQIT------------------------DTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
+ + G ++ L LT LD+ +I D+GA L
Sbjct: 230 NDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLS 289
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
++L L++ + D G++ I L LT LN ++N ++ + IS + L L V
Sbjct: 290 RMEHLTKLDVGFNSIGDRGIRSISMLKKLTDLN-ARNNEFGNEGAKYISEMMQLTILQVD 348
Query: 480 NSRITSAGLRHLKPLKNLRSLTLES 504
++ G+ + +KNL+ L + S
Sbjct: 349 ENKFGDEGIIAITKMKNLKKLRIFS 373
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 6/225 (2%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L++LT L++ ++ + LS L L YLN++ + ++ + + L LN+G
Sbjct: 170 QLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGG 229
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N++ E + + +L+ L G+G++G ++ L +L L++S+ Q+ +G LS
Sbjct: 230 NDLNIESFSMIGKMDHLKKLEFGVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLS 289
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+ +L +++ F I D +R ++ L L LN + + G ++ + LT L +
Sbjct: 290 RMEHLTKLDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDE 349
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAG------VKHIKDLS 446
+ D G + KNL+ L I + G KHI L
Sbjct: 350 NKFGDEGIIAITKMKNLKKLRIFSEYMDKEGKDALLNTKHITKLK 394
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 61/290 (21%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +D+SG+++ D G + L LD + +S+ G++HL L L L+ N
Sbjct: 148 KQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNY-LSNVGVKHLSDLQQLIYLNVSYN 206
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL----ESLNIKWCNCITDSD 172
+ +D E I+ N+K L KL LNI+ + I D
Sbjct: 207 D------------------VDEEVAKDIY----NMKKLSKLNIGGNDLNIESFSMIGKMD 244
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+LK L+ + + G F++ L+ L
Sbjct: 245 --------HLKKLEFGVVGLGNDGFE--------------------------FISKLKHL 270
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T+L++ + + LS + L L++ + D G S + L LN NE +
Sbjct: 271 TMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRSISMLKKLTDLNARNNEFGN 330
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
E ++ + L L +D GDEG++ +T + NLK L + + G
Sbjct: 331 EGAKYISEMMQLTILQVDENKFGDEGIIAITKMKNLKKLRIFSEYMDKEG 380
>gi|195346821|ref|XP_002039953.1| GM15616 [Drosophila sechellia]
gi|194135302|gb|EDW56818.1| GM15616 [Drosophila sechellia]
Length = 538
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 169/397 (42%), Gaps = 112/397 (28%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 303
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 304 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 363
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G
Sbjct: 364 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 423
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
I+S+ C I S Q LT + L L L+LN+
Sbjct: 424 GINSLDVSFCDKI-----------SDQALTHI--------------AQGLYRLRSLSLNQ 458
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL 322
CQ++D G K + K L LE+LN+ C I D+GL L
Sbjct: 459 CQITDHGMLKIA-----------------------KALHELENLNIGQCSRITDKGLQTL 495
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 496 AEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 157/298 (52%), Gaps = 28/298 (9%)
Query: 232 LTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL 285
LT LNL GC A ++ A L +L L+L+ C Q++D + ++ + +L+ L L
Sbjct: 236 LTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLEL 294
Query: 286 GF--NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELS 334
G N L+ GL L+ LNL SC I D+G+ +L G L+ L L
Sbjct: 295 GGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQ 354
Query: 335 DTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 390
D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL + I+D G
Sbjct: 355 DCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIG 414
Query: 391 LAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLS 446
+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+ I K L
Sbjct: 415 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALH 474
Query: 447 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L LN+ Q +TDK L+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 475 ELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 171/377 (45%), Gaps = 82/377 (21%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
++L++ C ITD+ + ++ L NL++L++ C +T++G+
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLL----------------- 306
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSL--FYLNLNRCQ- 265
+ L+KL LNL C + A +A G+L YL L CQ
Sbjct: 307 --------LIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQR 358
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 359 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 418
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLN 380
T G SG + S+++SF ISD +L +A GL L+SL+
Sbjct: 419 T--------------EGGSG---------INSLDVSFCDKISDQALTHIAQGLYRLRSLS 455
Query: 381 LDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTD 436
L+ QITD G+ + +L L +L++ +RITD G L + NL+++++ G L+
Sbjct: 456 LNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 515
Query: 437 AGVKHIKDLSSLTLLNL 453
G+ I L L LNL
Sbjct: 516 KGIDIIMKLPKLQKLNL 532
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 401
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 462
>gi|343423900|emb|CCD18013.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 648
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 145/438 (33%), Positives = 223/438 (50%), Gaps = 54/438 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVK 135
L + S+L++LD + C I+D + L S+L +L IT + F+ +L
Sbjct: 131 LSELSSLRTLDLSHCTGITD--VSPLLKFSSLHTLDLSHCTGITDVSPLLMFS---SLRM 185
Query: 136 LDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LD+ CT G+ N+ L KL SL + + C +++ PLS L++L++L IS C+ +T
Sbjct: 186 LDISHCT----GITNVSPLSKLSSLRTLYFLYCTGITNVSPLSELSSLRTLDISHCTGIT 241
Query: 194 D----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS 249
D S ++ L+ L +S I S + RL + +LQKL L + G VT +
Sbjct: 242 DVSPLSELSSLRMLDLSHCTDI--SNVSRL----SKIIALQKLDLSHCTG--VTD--VSP 291
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 308
LS + L L L+ C D S++ SL++LNL ITD + L ++L +L+
Sbjct: 292 LSKMIGLEKLYLSHCTGITD-VPPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLD 348
Query: 309 LDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGS 366
L C GI D + L+ L +L+ L+LS G + + LS L++L +++LS TGI+D S
Sbjct: 349 LSHCTGITD--VSPLSELSSLRTLDLSHCT-GITDVSPLSELSSLCTLDLSHCTGITDVS 405
Query: 367 LRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNL 424
L+ LSSL +L L ITD ++ L+ L+ L LDL ITD + L L
Sbjct: 406 --PLSKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSGL 459
Query: 425 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SR 482
R L + +TD V + +LSSL +LNLS +TD +S L+ SL++ S
Sbjct: 460 RMLYLSHCPSITD--VSPLSELSSLRMLNLSHCTGITD-----VSPLSEFSSLHILGLSH 512
Query: 483 ITSAGLRHLKPLKNLRSL 500
T G+ + PL L SL
Sbjct: 513 CT--GITDVSPLSKLSSL 528
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 209/437 (47%), Gaps = 52/437 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L L I + + +I L KL
Sbjct: 223 LSELSSLRTLDISHCTGITD--VSPLSELSSLRMLDLSHCTDI--SNVSRLSKIIALQKL 278
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD- 194
DL CT + + L ++ LE L + C ITD + PLS L++L+ L +S C+ +TD
Sbjct: 279 DLSHCTGV-TDVSPLSKMIGLEKLYLSHCTGITD--VPPLSELSSLRMLNLSHCTGITDV 335
Query: 195 ---SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
S + L L +S C+ I + L+ L L L+L C + LS
Sbjct: 336 SPLSEFSSLHTLDLSH-----CTGITDV----SPLSELSSLRTLDLSHC-TGITDVSPLS 385
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLD 310
L SL L+L+ C D SK+ SL L L ITD + L L++L +L+L
Sbjct: 386 ELSSLCTLDLSHCTGITD-VSPLSKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLS 442
Query: 311 SC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLR 368
C GI D + L+ L L+ L LS + + LS L++L +NLS TGI+D S
Sbjct: 443 HCTGITD--VSPLSELSGLRMLYLSHCP-SITDVSPLSELSSLRMLNLSHCTGITDVS-- 497
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR----ITD-SGAAYLRNFKN 423
L+ SSL L L TG+ ++ L+ L+ L + G ITD S + F+
Sbjct: 498 PLSEFSSLHILGLSHC----TGITDVSPLSKLSSLHILGLSHCTGITDVSPLTTIIGFEK 553
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
L L C G +TD V + +LSSL L+LS +TD + +S L+ L +L S+
Sbjct: 554 LY-LSNCTG-ITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLYFSH--- 604
Query: 484 TSAGLRHLKPLKNLRSL 500
G+ + PL L SL
Sbjct: 605 -CTGITDVSPLSELSSL 620
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L+ L+ + C I+D + L S+L L IT + + L +L L
Sbjct: 476 LSELSSLRMLNLSHCTGITD--VSPLSEFSSLHILGLSHCTGIT--DVSPLSKLSSLHIL 531
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L CT I + L ++ E L + C ITD + PLS L++L++L +S C+ +TD
Sbjct: 532 GLSHCTGI-TDVSPLTTIIGFEKLYLSNCTGITD--VSPLSELSSLRTLDLSHCTGITD- 587
Query: 196 GIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
++ L L S+ ++ F C+ I + L L+SL+ L LL+ G + L LS+LG
Sbjct: 588 -VSPLSKLSSLRTLYFSHCTGITDVSPL-SELSSLRTLDLLHCTGI-TDVSPLSELSSLG 644
Query: 255 SLFY 258
+L +
Sbjct: 645 TLDF 648
>gi|405954703|gb|EKC22070.1| F-box/LRR-repeat protein 14 [Crassostrea gigas]
Length = 403
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 161/299 (53%), Gaps = 36/299 (12%)
Query: 235 LNLEGCPVTAACLDSLSALGSLF--------YLNLNRC-QLSDDGCEKFSK-IGSLKVLN 284
LNL GC V ALG F LNL+ C Q++D+ + ++ + +L+VL
Sbjct: 102 LNLSGCFVVTD-----HALGHAFSQDLPCMTVLNLSLCKQITDNSLGRIAQYLTNLEVLE 156
Query: 285 LG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTG--------LCNLKCLEL 333
LG + IT+ L+ + GL L++LNL SC I D G+ +L G ++ L L
Sbjct: 157 LGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEIENLGL 216
Query: 334 SDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDT 389
D Q + L+HLS GL NL+++NLSF G ++D ++ L+ + +++ +NL + I+D
Sbjct: 217 QDCQKLTDLSLKHLSCGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDV 276
Query: 390 GLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKH-IKDL 445
GL L + +T LD+ F ++ D G +L + +LR++ + ++D G+ + L
Sbjct: 277 GLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTL 336
Query: 446 SSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
+T LN+ Q +TDK L LI+ L L S+++ +RIT+ GL + L+ L +L L
Sbjct: 337 QDITTLNIGQCVRITDKGLSLIADHLKNLQSIDLYGCTRITTVGLERIMQLRGLTTLNL 395
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 195/422 (46%), Gaps = 68/422 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L++ S V D G + + C + + +N C+ HLR R N
Sbjct: 17 PEVLTIIFSYLSVRDKGRVA-QVCVKWRDVAYNRCVWRGVCAKLHLR----------RAN 65
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ +K G+ + L L+R R + G+ +E+LN+ C +TD +
Sbjct: 66 PSLFPSLVKR--GIKRVQILSLKRSLRD-----VVVGIPNVETLNLSGCFVVTDHALGHA 118
Query: 177 --SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
L + L +S C ++TD+ + + +LT+L+
Sbjct: 119 FSQDLPCMTVLNLSLCKQITDNSLGRIAQ----------------------YLTNLE--- 153
Query: 234 LLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF------SKIGSLKVLN 284
+L L GC L L L LNL C+ +SD G + G+L++ N
Sbjct: 154 VLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEIEN 213
Query: 285 LGFNE---ITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL-SDTQV 338
LG + +TD L HL GL NL++LNL CG + D G+ L+ + ++ + L S +
Sbjct: 214 LGLQDCQKLTDLSLKHLSCGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNI 273
Query: 339 GSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT 395
GL +L+ G + + S+++SF + D L LA GL SL++++L A I+D GL L
Sbjct: 274 SDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLV 333
Query: 396 -SLTGLTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLL 451
+L +T L++ RITD G + + + KNL+S+++ G +T G++ I L LT L
Sbjct: 334 NTLQDITTLNIGQCVRITDKGLSLIADHLKNLQSIDLYGCTRITTVGLERIMQLRGLTTL 393
Query: 452 NL 453
NL
Sbjct: 394 NL 395
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 141/299 (47%), Gaps = 56/299 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA ++L ++L G S++T++GL+ + L++L+ C ISD G+ H
Sbjct: 137 ITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGH 196
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----GLMKL 157
L G S A AG + + L L+ C ++ ++LK GL+ L
Sbjct: 197 LAGNSP-----------------NAAAGTLEIENLGLQDCQKLTD--LSLKHLSCGLVNL 237
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCS 214
++LN+ +C +TDS +K LS + ++ + + SC ++D G+ YL G I+S+ C
Sbjct: 238 KTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCD 297
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEK 273
+ +H L L ++L C ++ L+ L + L + LN+ +C
Sbjct: 298 KVGDEGLVH-LAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQC--------- 347
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNL 328
+++ + G + I D HLK NL+S++L C +G E ++ L GL L
Sbjct: 348 ------VRITDKGLSLIAD----HLK---NLQSIDLYGCTRITTVGLERIMQLRGLTTL 393
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 34/244 (13%)
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL---------ELSDTQVGSSGLRHLSGLT 350
G+ N+E+LNL C + + + +L C+ +++D +G R LT
Sbjct: 95 GIPNVETLNLSGCFVVTDHALGHAFSQDLPCMTVLNLSLCKQITDNSLG----RIAQYLT 150
Query: 351 NLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALT-----SLTGLTH 402
NLE + L + I++ L +A GL LK+LNL + R I+D G+ L + G
Sbjct: 151 NLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLE 210
Query: 403 LDLFG----ARITDSGAAYLR----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454
++ G ++TD +L N K L +L CG +TD+GVK + + ++ +NL
Sbjct: 211 IENLGLQDCQKLTDLSLKHLSCGLVNLKTL-NLSFCGS-VTDSGVKFLSKMQTMREINLR 268
Query: 455 QNCNLTDKTL-ELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 511
N++D L L G + + SL+VS ++ GL HL + L +LR+++L +C ++
Sbjct: 269 SCDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEG 328
Query: 512 IKRL 515
+ RL
Sbjct: 329 LNRL 332
>gi|302767392|ref|XP_002967116.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
gi|300165107|gb|EFJ31715.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
Length = 637
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 143/490 (29%), Positives = 221/490 (45%), Gaps = 82/490 (16%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA-GLINLVKLD 137
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A LV+LD
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELD 124
Query: 138 LERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKV 192
L C + L + L L L++ C I+D+ + L+ K LQ+ C +
Sbjct: 125 LRCCNSLGDLELAAVCQLGSLRKLDLTGCYMISDAGLGCLAA--GCKKLQVVVLKGCVGI 182
Query: 193 TDSGIAYL----KGLSISSVIFI-LCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAAC 246
+D+G+ +L K L+ V + + +R L++L L +LNL C V A
Sbjct: 183 SDAGLCFLASNCKELTTIDVSYTEITDDGVRC------LSNLPSLRVLNLAACSNVGDAG 236
Query: 247 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHL 298
L S SL L+L+ C+ +++ G SK SL+ L LGF ++IT + L +
Sbjct: 237 LTRTST--SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAV 293
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGL 349
LT +++L L C I +GL G C CL+LSD T G + + H G
Sbjct: 294 GKLTQIQTLKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GC 347
Query: 350 TNLESINLS----FTGISDGSL-RKLAGLSSLK-----------------------SLNL 381
NL ++L+ T I+ ++ R AGL SLK L++
Sbjct: 348 KNLRKLDLTCCLDLTEITAYNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDV 407
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGV 439
I D GL + L L L +++D+G ++ RN +L L++ G + DAGV
Sbjct: 408 TDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGV 467
Query: 440 KHIK-DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNL 497
I L +LNLS N+TD ++ IS L+ L L + + GL + L KNL
Sbjct: 468 ASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCK--RVGLEKKLPEFKNL 525
Query: 498 RSLTLESCKV 507
L L+ C +
Sbjct: 526 VELDLKHCGI 535
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 106/438 (24%), Positives = 190/438 (43%), Gaps = 70/438 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L+ L ++C AY S + ++ + + + + LT N+
Sbjct: 350 LRKLDLTCCLDLTEITAYNIARSSAGLV-------------SLKIEACRILTENNIPLLM 396
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KG 300
+CL+ L++ C + D G E +K LK L LGF +++D + H+ +
Sbjct: 397 ERCSCLEE---------LDVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRN 447
Query: 301 LTNLESLNLDSCG-IGDEGLVNLTGLC------NLK-CLELSDTQVGSSGLRHLSGLTNL 352
++L L+L G +GD G+ ++ C NL C ++D + S + LS L L
Sbjct: 448 CSDLIELDLYRSGNVGDAGVASIAAGCRKLRILNLSYCPNITDASIVS--ISQLSHLQQL 505
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARIT 411
E G+ +KL +L L+L I D G+ ++ L L+L RI+
Sbjct: 506 EIRGCKRVGLE----KKLPEFKNLVELDLKHCGIGDRGMTSIVYCFPNLQQLNLSYCRIS 561
Query: 412 DSGAAYLRNFKNLRSLEI 429
++G L N + L+++++
Sbjct: 562 NAGLVMLGNLRCLQNVKL 579
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 132/499 (26%), Positives = 227/499 (45%), Gaps = 42/499 (8%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFC 91
L+ L L + G + +A S+L+ +DL + + D L + +L+ LD C
Sbjct: 94 LRSLGLARMGGFTVAGIVALARNCSALVELDLRCCNSLGDLELAAVCQLGSLRKLDLTGC 153
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLV 149
ISD GL L G L + + I+ G+ A L +D+ G+
Sbjct: 154 YMISDAGLGCLAAGCKKLQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVR 213
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLSISSV 208
L L L LN+ C+ + D+ + S T+L L +SC + VT+ GI++L S+ +
Sbjct: 214 CLSNLPSLRVLNLAACSNVGDAGLTRTS--TSLLELDLSCCRSVTNVGISFLSKRSLQFL 271
Query: 209 IFILCSMII-RLFCLHVFLTSLQKLT---LLNLEGCPVTAACLDSLSALGS----LFYLN 260
CS + R L ++ KLT L L GC + D L +GS L L+
Sbjct: 272 KLGFCSPVKKRSQITGQLLEAVGKLTQIQTLKLAGCEIAG---DGLRFVGSCCLQLSDLS 328
Query: 261 LNRCQLSDD--------GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
L++C+ D GC+ K+ L+L EIT + + L SL +++C
Sbjct: 329 LSKCRGVTDSGMASIFHGCKNLRKLDLTCCLDL--TEITAYNIA--RSSAGLVSLKIEAC 384
Query: 313 GIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
I E + L + CLE ++D + +GL ++ L+++ L F +SD +
Sbjct: 385 RILTENNIPLL-MERCSCLEELDVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEH 443
Query: 370 LA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLR 425
+ S L L+L + + D G+A++ + L L+L + ITD+ + +L+
Sbjct: 444 VGRNCSDLIELDLYRSGNVGDAGVASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQ 503
Query: 426 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRI 483
LEI G G+ K + + +L L+L ++C + D+ + ++ L LN+S RI
Sbjct: 504 QLEI--RGCKRVGLEKKLPEFKNLVELDL-KHCGIGDRGMTSIVYCFPNLQQLNLSYCRI 560
Query: 484 TSAGLRHLKPLKNLRSLTL 502
++AGL L L+ L+++ L
Sbjct: 561 SNAGLVMLGNLRCLQNVKL 579
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 39/258 (15%)
Query: 271 CEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 327
C++F G S K + L +E+ L G+ ESL+L SC I DE L L G
Sbjct: 35 CKRFYAAGAESQKTMRLFNSELLPRALARHTGI---ESLDLSSCIKITDEDLA-LVG--- 87
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLS-------------FTGISDGSLRKLAGLS 374
EL+ T++ S GL + G T + L+ + D L + L
Sbjct: 88 ----ELAGTRLRSLGLARMGGFTVAGIVALARNCSALVELDLRCCNSLGDLELAAVCQLG 143
Query: 375 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR----ITDSGAAYL-RNFKNLRSLE 428
SL+ L+L I+D GL L + G L + + I+D+G +L N K L +++
Sbjct: 144 SLRKLDLTGCYMISDAGLGCLAA--GCKKLQVVVLKGCVGISDAGLCFLASNCKELTTID 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 487
+ +TD GV+ + +L SL +LNL+ N+ D L S T L+ L++S R +T+ G
Sbjct: 202 VSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTS--TSLLELDLSCCRSVTNVG 259
Query: 488 LRHLKPLKNLRSLTLESC 505
+ L ++L+ L L C
Sbjct: 260 ISFLSK-RSLQFLKLGFC 276
>gi|255523032|ref|ZP_05390004.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513147|gb|EET89415.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 676
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 171/347 (49%), Gaps = 56/347 (16%)
Query: 124 MKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+K F+G L NL +L+L R + I+ + LK L+KL+S+++ + SD+ L LT
Sbjct: 170 IKDFSGIENLTNLKQLNL-RESEIND-ISELKNLVKLQSIDLSYNKI---SDISALKNLT 224
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK L + +KV D +S+ S + L + + H F T + E
Sbjct: 225 NLKKLNLGNNKVRD--------ISVLSKLTNLQELNLGYIPYHDFETP-------DPEAN 269
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVH-L 298
+ + +L L +L LNL ++ D + +LK L+L N+I+D +V+ L
Sbjct: 270 YNEISDISALKNLTNLQTLNLGYTKIKD--LNALKGLNNLKTLDLSGNQISDISSIVNVL 327
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
K LT+L LNL + I + + L L +LK L+L+ ++ S + L GL+NL++++LS
Sbjct: 328 KELTSLNDLNLSTNEISN--IDELNKLTSLKMLKLNSNKI--SNINRLKGLSNLQTLDLS 383
Query: 359 FTGISD---------------------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
ISD ++ +L L++LK+LNL +I+D ++AL L
Sbjct: 384 SNQISDTANTLKELNNLNDLNLSNNQISNIGELNKLTNLKALNLYYNKISD--ISALKGL 441
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+ L +DL I+D + N NLR L + ++D ++ +K+
Sbjct: 442 SNLQMIDLSYNEISD--ISVFENLANLRELILLSNPISDVDIQALKN 486
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 47/240 (19%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
+ISD + L+ L+NL +L+ + + A GL NL LDL + + I +
Sbjct: 272 EISD--ISALKNLTNLQTLNL---GYTKIKDLNALKGLNNLKTLDLSGNQISDISSIVNV 326
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
LK L L LN+ N I++ D L+ LT+LK L+++ +K+ S I LKGLS
Sbjct: 327 LKELTSLNDLNLS-TNEISNID--ELNKLTSLKMLKLNSNKI--SNINRLKGLS------ 375
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
L L+L ++ ++L L +L LNL+ Q+S+ G
Sbjct: 376 --------------------NLQTLDLSSNQISDTA-NTLKELNNLNDLNLSNNQISNIG 414
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTGLC 326
+ +K+ +LK LNL +N+I+D + LKGL+NL+ ++L I D E L NL L
Sbjct: 415 --ELNKLTNLKALNLYYNKISD--ISALKGLSNLQMIDLSYNEISDISVFENLANLRELI 470
>gi|290990083|ref|XP_002677666.1| predicted protein [Naegleria gruberi]
gi|284091275|gb|EFC44922.1| predicted protein [Naegleria gruberi]
Length = 262
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 7/224 (3%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L L+ LT LN+ P+ L + L L L++ C ++++ + ++ +L+ L
Sbjct: 24 LGQLKDLTCLNINHIPIGLEGLKIIGENLQQLKSLDVTNCGITNEAAQYIRQLNNLESLT 83
Query: 285 LGFNEITDECLVHLKGLT---NLESLNL-DSCGIG-DEGLVNLTGLCNLKCLELSDTQVG 339
+ F +CL ++ L+ L+SLN+ +S IG +G ++ L NL L + T +
Sbjct: 84 ITF-VFYQKCLKGVEALSEMKQLKSLNIGNSSDIGGPQGAKLISSLYNLTSLRMDGTMIE 142
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G R +S L +L ++L+ ISD + ++GL + L++ I D G A+ ++
Sbjct: 143 DEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAIATMNQ 202
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
L L L +I D GA Y+ LRSL +CG +T +++++
Sbjct: 203 LKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVSIQNLR 246
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC 141
L SL+ +C + D + L L +LT L+ + I +G+K L L LD+ C
Sbjct: 8 LNSLNIGYC-SVED--IAPLGQLKDLTCLNIN-HIPIGLEGLKIIGENLQQLKSLDVTNC 63
Query: 142 TRIHGGLVNLKGLMKLESLNIKWC---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ ++ L LESL I + C+ ++ LS + LKSL I S S I
Sbjct: 64 GITNEAAQYIRQLNNLESLTITFVFYQKCL--KGVEALSEMKQLKSLNIGNS----SDIG 117
Query: 199 YLKGLSISSVIFILCSMIIRLFCLH----VFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
+G + S ++ L S+ + + F++ L+ L L+L G ++ S+S L
Sbjct: 118 GPQGAKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLK 177
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+ L++ R + D+G + + + LK L L N+I D+ ++ L L SL + CG
Sbjct: 178 HVTDLDMARNDIGDEGAKAIATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAV--CG 234
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGL 105
+ + +I L S+D++ +T+ +++ +NL+SL F Q G+E L +
Sbjct: 43 EGLKIIGENLQQLKSLDVTNCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEM 102
Query: 106 SNLTSLSFRRNNAI-TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L SL+ ++ I QG K + L NL L ++ G + L L L++
Sbjct: 103 KQLKSLNIGNSSDIGGPQGAKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTG 162
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
N I+D K +SGL ++ L ++ + + D G
Sbjct: 163 -NNISDEGAKSISGLKHVTDLDMARNDIGDEG 193
>gi|171912739|ref|ZP_02928209.1| Leucine-rich repeat [Verrucomicrobium spinosum DSM 4136]
Length = 443
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 201/433 (46%), Gaps = 51/433 (11%)
Query: 20 LTEVSLEAFRDCALQDLCLG-QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
L EV LE L+ L LG Y KW + S + G+ S L HL
Sbjct: 34 LDEVPLEVAELSHLRQLSLGWNYSPSAKKW-----NPDRSFFN---PGAMSNLSELAHLP 85
Query: 79 -DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ +L++ FN C + G LR L NL S S+ RN ++ + L L L+
Sbjct: 86 LEWLDLRATGFNNCAALE--GFSALRSL-NL-SHSYVRN-------IEPLSALSQLQCLE 134
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L C + + K L +L +L + SD++PL+ L L+ L I +KVTD +
Sbjct: 135 L--C---QTQVTDFKPLQRLGALQQLDLYSTSVSDLEPLAALHALQQLNICSTKVTD--L 187
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
L GLS + + L L +T+LQ+ L P+ LD+L+ L L
Sbjct: 188 EPLAGLSSLRQFNFSFTGVTELDPL-AKITTLQQ---LEFRLAPIFD--LDALAGLRELQ 241
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
L+L+ ++ D E S +G+L+ L ++D L L GL+ L L+L C
Sbjct: 242 KLDLSTTEVRD--LEPLSGLGALQKLYFNHTAVSD--LGPLAGLSALRKLDL-RCARRVT 296
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
+ L GL L+ L L+ TQV + L L+ L NL+ ++LS T +SD L L L++L+
Sbjct: 297 DIGPLAGLHALQRLILASTQV--TDLTPLTELRNLQHLDLSRTKVSD--LSPLTSLTALR 352
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD- 436
SL L + Q++D LA L + L L L +++D G + +L+ L + +TD
Sbjct: 353 SLGLTSTQVSD--LAPLAAYRDLQRLFLDSTQVSDLGP--VAGMNSLQELYVSHTSVTDL 408
Query: 437 ---AGVKHIKDLS 446
AG+ +K LS
Sbjct: 409 GPLAGLTELKRLS 421
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 146/326 (44%), Gaps = 76/326 (23%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++ + VTD L L S+L+ +F+F G+ L L+ +T+L
Sbjct: 173 ALQQLNICSTKVTD--LEPLAGLSSLRQFNFSFT------GVTELDPLAKITTLQQLEFR 224
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A AGL L KLDL T + L L GL L+ L + N SD+ PL+
Sbjct: 225 LAPIFDLDALAGLRELQKLDLS-TTEVRD-LEPLSGLGALQKL---YFNHTAVSDLGPLA 279
Query: 178 GLTNLKSLQISCS-KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
GL+ L+ L + C+ +VTD I L GL +LQ+L L +
Sbjct: 280 GLSALRKLDLRCARRVTD--IGPLAGLH-----------------------ALQRLILAS 314
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
+ +T L+ L +L +L+L+R ++SD L
Sbjct: 315 TQVTDLTP-----LTELRNLQHLDLSRTKVSD--------------------------LS 343
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L LT L SL L S + D L L +L+ L L TQV S L ++G+ +L+ +
Sbjct: 344 PLTSLTALRSLGLTSTQVSD--LAPLAAYRDLQRLFLDSTQV--SDLGPVAGMNSLQELY 399
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLD 382
+S T ++D L LAGL+ LK L++D
Sbjct: 400 VSHTSVTD--LGPLAGLTELKRLSVD 423
>gi|195487977|ref|XP_002092120.1| GE11843 [Drosophila yakuba]
gi|194178221|gb|EDW91832.1| GE11843 [Drosophila yakuba]
Length = 533
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 169/397 (42%), Gaps = 112/397 (28%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 197 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 238
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 239 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 298
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 299 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 358
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G
Sbjct: 359 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 418
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
I+S+ C I S Q LT + L L L+LN+
Sbjct: 419 GINSLDVSFCDKI-----------SDQALTHIA--------------QGLYRLRSLSLNQ 453
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL 322
CQ++D G K + K L LE+LN+ C I D+GL L
Sbjct: 454 CQITDHGMLKIA-----------------------KALHELENLNIGQCSRITDKGLQTL 490
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 491 AEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 527
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 157/298 (52%), Gaps = 28/298 (9%)
Query: 232 LTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL 285
LT LNL GC A ++ A L +L L+L+ C Q++D + ++ + +L+ L L
Sbjct: 231 LTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLEL 289
Query: 286 GF--NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELS 334
G N L+ GL L+ LNL SC I D+G+ +L G L+ L L
Sbjct: 290 GGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQ 349
Query: 335 DTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 390
D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL + I+D G
Sbjct: 350 DCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIG 409
Query: 391 LAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLS 446
+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+ I K L
Sbjct: 410 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALH 469
Query: 447 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L LN+ Q +TDK L+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 470 ELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 527
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 171/377 (45%), Gaps = 82/377 (21%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 207 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 258
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
++L++ C ITD+ + ++ L NL++L++ C +T++G+
Sbjct: 259 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLL----------------- 301
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSL--FYLNLNRCQ- 265
+ L+KL LNL C + A +A G+L YL L CQ
Sbjct: 302 --------LIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQR 353
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 354 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 413
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLN 380
T G SG + S+++SF ISD +L +A GL L+SL+
Sbjct: 414 T--------------EGGSG---------INSLDVSFCDKISDQALTHIAQGLYRLRSLS 450
Query: 381 LDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTD 436
L+ QITD G+ + +L L +L++ +RITD G L + NL+++++ G L+
Sbjct: 451 LNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 510
Query: 437 AGVKHIKDLSSLTLLNL 453
G+ I L L LNL
Sbjct: 511 KGIDIIMKLPKLQKLNL 527
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 285
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 401
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 286 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 341
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 342 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 400
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 401 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 457
>gi|157865947|ref|XP_001681680.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124978|emb|CAJ02759.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 610
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 125/259 (48%), Gaps = 3/259 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+TSL+ L++ E ++ A S++ SL +LNL+ ++S ++S + SL+ L+L
Sbjct: 155 MTSLESLSIEKCES--ISGALPPQWSSMKSLSFLNLDGAKVSGSLPPQWSSMKSLRTLDL 212
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G +++ +T L LNLD + + + L L++ TQV +
Sbjct: 213 GDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQWSSMTLLAVLDVQGTQVSGTLPPQ 272
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
S + +L +NL T IS + + ++SL L++ Q++ T + +T LT LD+
Sbjct: 273 WSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAVLDVQGTQVSGTLPPQWSLMTSLTSLDV 332
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G +++ S + +L +L + G ++ ++SLT L++ Q ++
Sbjct: 333 QGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTLPPQWSSMTSLTSLDV-QGTQVSGTLPP 391
Query: 466 LISGLTGLVSLNVSNSRIT 484
S +T L +L+V ++++
Sbjct: 392 QWSSMTSLAALDVQGTQVS 410
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 162/369 (43%), Gaps = 28/369 (7%)
Query: 143 RIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
++ G L + + LESL+I+ C I+ + S + +L L + +KV+ S
Sbjct: 143 KVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLNLDGAKVSGS------ 196
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
L +S++ L L+L V+ + S++ L +LNL
Sbjct: 197 --------------------LPPQWSSMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNL 236
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
+ ++S ++S + L VL++ +++ + +L LNL I
Sbjct: 237 DGAKVSGALPPQWSSMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQ 296
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
+ + +L L++ TQV + S +T+L S+++ T +S + + ++SL +LNL
Sbjct: 297 WSSMTSLAVLDVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNL 356
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
Q++ T +S+T LT LD+ G +++ + + +L +L++ G ++
Sbjct: 357 RGTQVSGTLPPQWSSMTSLTSLDVQGTQVSGTLPPQWSSMTSLAALDVQGTQVSGTLPPQ 416
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+ LT L L+ E S L LV+L +S+S+++ + +SL
Sbjct: 417 WSSMRRLTHLLLTDTLLSGTLPAEW-SALQSLVTLQLSSSKVSGTLPPQWSGMSKAQSLQ 475
Query: 502 LESCKVTAN 510
L+ C ++ +
Sbjct: 476 LQDCDLSGS 484
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 166/426 (38%), Gaps = 77/426 (18%)
Query: 6 ISQQIFNEL---VYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
+S +F L Y+ L E+ + +R ++DL P + D W S+
Sbjct: 78 VSVNVFVSLDVSTYAGTLPEMPVGVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SKLE 132
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L + L G+ V+ + ++L+SL C IS G L S++ SLSF +
Sbjct: 133 KLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESIS-GALPPQ--WSSMKSLSFLNLD 189
Query: 118 AITAQG--MKAFAGLINLVKLDLERCTRIHGGL------------VNLKGLMKLESLNIK 163
G ++ + +L LDL T++ G L +NL G +L +
Sbjct: 190 GAKVSGSLPPQWSSMKSLRTLDLGD-TQVSGSLPPQWSSMTLLSFLNLDGAKVSGALPPQ 248
Query: 164 WCN----CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
W + + D +SG +L S + + L+G SIS + S
Sbjct: 249 WSSMTLLAVLDVQGTQVSG-----TLPPQWSSMKSLSVLNLRGTSISGSVPPQWS----- 298
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
S+ L +L+++G V+ S + SL L++ Q+S ++S + S
Sbjct: 299 --------SMTSLAVLDVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTS 350
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L LNL +++ +T+L SL++ + + + +L L++ TQV
Sbjct: 351 LTALNLRGTQVSGTLPPQWSSMTSLTSLDVQGTQVSGTLPPQWSSMTSLAALDVQGTQVS 410
Query: 340 S------SGLR------------------HLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
S +R S L +L ++ LS + +S + +G+S
Sbjct: 411 GTLPPQWSSMRRLTHLLLTDTLLSGTLPAEWSALQSLVTLQLSSSKVSGTLPPQWSGMSK 470
Query: 376 LKSLNL 381
+SL L
Sbjct: 471 AQSLQL 476
>gi|17647819|ref|NP_523812.1| partner of paired, isoform A [Drosophila melanogaster]
gi|194884489|ref|XP_001976275.1| GG20101 [Drosophila erecta]
gi|10441427|gb|AAG17034.1|AF187980_1 Partner of Paired [Drosophila melanogaster]
gi|7291460|gb|AAF46886.1| partner of paired, isoform A [Drosophila melanogaster]
gi|21430560|gb|AAM50958.1| RE01138p [Drosophila melanogaster]
gi|190659462|gb|EDV56675.1| GG20101 [Drosophila erecta]
gi|220947678|gb|ACL86382.1| CG9952-PA [synthetic construct]
gi|220957060|gb|ACL91073.1| ppa-PA [synthetic construct]
Length = 538
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 169/397 (42%), Gaps = 112/397 (28%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 303
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 304 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 363
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G
Sbjct: 364 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 423
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
I+S+ C I S Q LT + L L L+LN+
Sbjct: 424 GINSLDVSFCDKI-----------SDQALTHIA--------------QGLYRLRSLSLNQ 458
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL 322
CQ++D G K + K L LE+LN+ C I D+GL L
Sbjct: 459 CQITDHGMLKIA-----------------------KALHELENLNIGQCSRITDKGLQTL 495
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 496 AEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 157/298 (52%), Gaps = 28/298 (9%)
Query: 232 LTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL 285
LT LNL GC A ++ A L +L L+L+ C Q++D + ++ + +L+ L L
Sbjct: 236 LTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLEL 294
Query: 286 GF--NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELS 334
G N L+ GL L+ LNL SC I D+G+ +L G L+ L L
Sbjct: 295 GGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQ 354
Query: 335 DTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 390
D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL + I+D G
Sbjct: 355 DCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIG 414
Query: 391 LAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLS 446
+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+ I K L
Sbjct: 415 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALH 474
Query: 447 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L LN+ Q +TDK L+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 475 ELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 171/377 (45%), Gaps = 82/377 (21%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
++L++ C ITD+ + ++ L NL++L++ C +T++G+
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLL----------------- 306
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSL--FYLNLNRCQ- 265
+ L+KL LNL C + A +A G+L YL L CQ
Sbjct: 307 --------LIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQR 358
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 359 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 418
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLN 380
T G SG + S+++SF ISD +L +A GL L+SL+
Sbjct: 419 T--------------EGGSG---------INSLDVSFCDKISDQALTHIAQGLYRLRSLS 455
Query: 381 LDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTD 436
L+ QITD G+ + +L L +L++ +RITD G L + NL+++++ G L+
Sbjct: 456 LNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 515
Query: 437 AGVKHIKDLSSLTLLNL 453
G+ I L L LNL
Sbjct: 516 KGIDIIMKLPKLQKLNL 532
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 401
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 462
>gi|442624469|ref|NP_001261138.1| partner of paired, isoform B [Drosophila melanogaster]
gi|440214583|gb|AGB93669.1| partner of paired, isoform B [Drosophila melanogaster]
Length = 562
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 169/397 (42%), Gaps = 112/397 (28%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 303
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 304 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 363
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G
Sbjct: 364 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 423
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
I+S+ C I S Q LT + L L L+LN+
Sbjct: 424 GINSLDVSFCDKI-----------SDQALTHI--------------AQGLYRLRSLSLNQ 458
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL 322
CQ++D G K + K L LE+LN+ C I D+GL L
Sbjct: 459 CQITDHGMLKIA-----------------------KALHELENLNIGQCSRITDKGLQTL 495
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 496 AEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 157/298 (52%), Gaps = 28/298 (9%)
Query: 232 LTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL 285
LT LNL GC A ++ A L +L L+L+ C Q++D + ++ + +L+ L L
Sbjct: 236 LTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLEL 294
Query: 286 G--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELS 334
G N L+ GL L+ LNL SC I D+G+ +L G L+ L L
Sbjct: 295 GGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQ 354
Query: 335 DTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 390
D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL + I+D G
Sbjct: 355 DCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIG 414
Query: 391 LAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLS 446
+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+ I K L
Sbjct: 415 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALH 474
Query: 447 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L LN+ Q +TDK L+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 475 ELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 175/377 (46%), Gaps = 82/377 (21%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 263
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG---IAY----LKGLSISSV 208
++L++ C ITD+ + ++ L NL++L++ C +T++G IA+ LK L++ S
Sbjct: 264 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRS- 322
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQ- 265
C H+ + L + E +A G+L YL L CQ
Sbjct: 323 ------------CWHISDQGIGHLAGFSRE------------TAEGNLQLEYLGLQDCQR 358
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 359 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 418
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLN 380
T G SG + S+++SF ISD +L +A GL L+SL+
Sbjct: 419 T--------------EGGSG---------INSLDVSFCDKISDQALTHIAQGLYRLRSLS 455
Query: 381 LDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTD 436
L+ QITD G+ + +L L +L++ +RITD G L + NL+++++ G L+
Sbjct: 456 LNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSS 515
Query: 437 AGVKHIKDLSSLTLLNL 453
G+ I L L LNL
Sbjct: 516 KGIDIIMKLPKLQKLNL 532
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 290
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 401
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 291 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 346
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 347 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 405
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 406 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 462
>gi|290996875|ref|XP_002681007.1| leucine-rich repeat family protein [Naegleria gruberi]
gi|284094630|gb|EFC48263.1| leucine-rich repeat family protein [Naegleria gruberi]
Length = 398
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 10/311 (3%)
Query: 162 IKWCNCIT-DSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
++ C C+T D D++P+S ++ L L IS +K S I +K L I + I
Sbjct: 84 LELCECLTGDKDIRPISRMSQLTKLNISKNAKYHLSDIFDMKQLKILEI----GENFIGD 139
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
+ L++LT+L + + + + LS L L L+L+ +D + +K+
Sbjct: 140 EQAELLSNHLKQLTILRINNNLIHSQGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQ 199
Query: 280 LKVLN---LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
LK L+ L + + L L SL++ + IGDEG ++ L L L +
Sbjct: 200 LKTLHVNKLARHRMGSRLGSQFGNLFQLTSLSISNNYIGDEGANEISNLTQLTELYVHGA 259
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
++G G R LS L L +++S I D +R LS L L + +I D G ++
Sbjct: 260 EIGYRGARSLSVLHQLTKLDISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISE 319
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ LT L + +I + GA + L+ L I G + D G K + +++ L + + N
Sbjct: 320 IPQLTSLVVSSNQIGNEGAKSISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGN 379
Query: 457 CNLTDKTLELI 467
N++++ +L
Sbjct: 380 -NISNEIFQLF 389
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 48/310 (15%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN-LTSLSFRR--NNAITAQ 122
+++ + HL D +++ L ++I + G E LSN L L+ R NN I +Q
Sbjct: 109 NISKNAKYHLSDIFDMKQLK---ILEIGENFIGDEQAELLSNHLKQLTILRINNNLIHSQ 165
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNL---KGLMKLESLNIKWCNCITDSDM-----K 174
G+K + L L +LDL G N + K+E L N + M
Sbjct: 166 GVKHLSKLDQLTELDLS------GNAFNDTIGSEIAKMEQLKTLHVNKLARHRMGSRLGS 219
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L L SL IS + + D G +++L +LT
Sbjct: 220 QFGNLFQLTSLSISNNYIGDEGANE--------------------------ISNLTQLTE 253
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L + G + SLS L L L+++ + D+G F ++ L L + N I D
Sbjct: 254 LYVHGAEIGYRGARSLSVLHQLTKLDISTNHIGDEGVRLFKQLSKLTELVVFNNRIGDVG 313
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
+ + L SL + S IG+EG +++ + LK L ++ Q+G G + LS + L
Sbjct: 314 AQLISEIPQLTSLVVSSNQIGNEGAKSISQMSKLKYLSINGNQIGDQGAKLLSEMNQLRR 373
Query: 355 INLSFTGISD 364
I + IS+
Sbjct: 374 IEVYGNNISN 383
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 28/256 (10%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
+K + NL+SL++ +C IG+E L + + +L LEL + G +R +S ++ L +N+
Sbjct: 51 IKMMKNLKSLSIGNCSIGEEDLKFIGEMNHLTELELCECLTGDKDIRPISRMSQLTKLNI 110
Query: 358 SFTG----------------------ISDGSLRKLAG-LSSLKSLNLDARQITDTGLAAL 394
S I D L+ L L L ++ I G+ L
Sbjct: 111 SKNAKYHLSDIFDMKQLKILEIGENFIGDEQAELLSNHLKQLTILRINNNLIHSQGVKHL 170
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK---HIKDLSSLTLL 451
+ L LT LDL G D+ + + + L++L + G + +L LT L
Sbjct: 171 SKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTLHVNKLARHRMGSRLGSQFGNLFQLTSL 230
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
++S N + D+ IS LT L L V + I G R L L L L + + +
Sbjct: 231 SISNNY-IGDEGANEISNLTQLTELYVHGAEIGYRGARSLSVLHQLTKLDISTNHIGDEG 289
Query: 512 IKRL-QSRDLPNLVSF 526
++ Q L LV F
Sbjct: 290 VRLFKQLSKLTELVVF 305
>gi|307215039|gb|EFN89866.1| F-box/LRR-repeat protein 14 [Harpegnathos saltator]
Length = 457
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 160/306 (52%), Gaps = 25/306 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L L + L LNL GC +T + S L +L LNL+ C Q++D + ++
Sbjct: 146 LSAVLRGVPNLEALNLSGCYNITDTGIMSGFCQELPTLTVLNLSLCKQVTDTSLGRIAQY 205
Query: 277 IGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN------ 327
+ +L+ L LG N +V GL L+ L+L SC + D+G+ L GL
Sbjct: 206 LKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIAYLAGLNREADGNL 265
Query: 328 -LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 383
L+ L L D Q + LR++S GLT L+SINLSF I+D ++ LA +SSL+ LNL +
Sbjct: 266 ALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRS 325
Query: 384 -RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 439
I+D G+A L + +T LD+ F +I D ++ + NL+SL + ++D G+
Sbjct: 326 CDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGI 385
Query: 440 -KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKN 496
K K L L LN+ Q LTD++L ++ + L +++ ++IT++GL + L
Sbjct: 386 CKIAKTLHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLPQ 445
Query: 497 LRSLTL 502
L +L L
Sbjct: 446 LSTLNL 451
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 142/312 (45%), Gaps = 65/312 (20%)
Query: 68 DVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMK 125
VTD+ L + NL+ L+ C I++ GL + GL L L R ++ QG+
Sbjct: 193 QVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIA 252
Query: 126 AFAGL-------INLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPL 176
AGL + L L L+ C R+ L N+ GL L+S+N+ +C CITDS +K L
Sbjct: 253 YLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHL 312
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ +++L+ L + SC ++D G+AYL G I+S+ C I +H+
Sbjct: 313 ARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHI------SQG 366
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L NL+ L+L+ CQ+SD+G K +K
Sbjct: 367 LFNLKS-------------------LSLSACQISDEGICKIAKT---------------- 391
Query: 294 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLT 350
L +LE+LN+ C + D L + + +LKC++L T++ +SGL + L
Sbjct: 392 -------LHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLP 444
Query: 351 NLESINLSFTGI 362
L ++NL +
Sbjct: 445 QLSTLNLGLWHV 456
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 166/336 (49%), Gaps = 33/336 (9%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--- 178
Q FA L+ ++ + HG L+G+ LE+LN+ C ITD+ + +SG
Sbjct: 121 QAPALFASLVRRGVKKVQVLSLRHGLSAVLRGVPNLEALNLSGCYNITDTGI--MSGFCQ 178
Query: 179 -LTNLKSLQIS-CSKVTDSGIA----YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
L L L +S C +VTD+ + YLK L + C I L V L+KL
Sbjct: 179 ELPTLTVLNLSLCKQVTDTSLGRIAQYLKNL--EHLELGGCCNITNTG-LMVIAWGLKKL 235
Query: 233 TLLNLEGC-PVTAACLDSLSALG-------SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKV 282
L+L C V+ + L+ L +L +L+L CQ LSD+ S + +LK
Sbjct: 236 KRLDLRSCWHVSDQGIAYLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKS 295
Query: 283 LNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQV 338
+NL F ITD + HL +++L LNL SC I D G+ L G + L++S ++
Sbjct: 296 INLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKI 355
Query: 339 GSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALT 395
G L H+S GL NL+S++LS ISD + K+A L L++LN+ ++TD L +
Sbjct: 356 GDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMA 415
Query: 396 -SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
++ L +DL+G +IT SG + L +L +
Sbjct: 416 ENMKHLKCIDLYGCTKITTSGLERIMKLPQLSTLNL 451
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 45/248 (18%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 346
L+G+ NLE+LNL C I D G+ ++G C NL C +++DT +G R
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGI--MSGFCQELPTLTVLNLSLCKQVTDTSLG----RIA 203
Query: 347 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 398
L NLE + L I++ L +A GL LK L+L + ++D G+A L L
Sbjct: 204 QYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIAYLAGLNREADG 263
Query: 399 --GLTHLDLFG-ARITDSGAAYLRN----FKNLRSLE----ICGGGLTDAGVKHIKDLSS 447
L HL L R++D LRN L+S+ +C +TD+GVKH+ +SS
Sbjct: 264 NLALEHLSLQDCQRLSDEA---LRNVSLGLTTLKSINLSFCVC---ITDSGVKHLARMSS 317
Query: 448 LTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLES 504
L LNL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +
Sbjct: 318 LRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSA 377
Query: 505 CKVTANDI 512
C+++ I
Sbjct: 378 CQISDEGI 385
>gi|157866007|ref|XP_001681710.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68125008|emb|CAJ02922.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 760
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 26/323 (8%)
Query: 144 IHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ G L GLM +L +L + C +T S S L N + I L+
Sbjct: 144 VSGTLPASWGLMVRLRALTVGNCRHLTGSLPSEWSWLPNFQ-------------ILVLRQ 190
Query: 203 LSISSVIFILCSMIIRLFCLHVF------------LTSLQKLTLLNLEGCPVTAACLDSL 250
L +S + S + L L + +S++ L LNLEG V+
Sbjct: 191 LQLSGTLPAEWSRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEGTQVSGTLPSGW 250
Query: 251 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
S + SL L L Q+S +S I SL+ LNL +++ + +L +LNL+
Sbjct: 251 SEMKSLTSLELEGTQVSGTLPPGWSSIKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLE 310
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
+ + + +L LEL TQV + S + +L ++NL T +S +
Sbjct: 311 GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQW 370
Query: 371 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
++SL++LNL+ Q++ T + + LT+L L G +++ S R K+L +L +
Sbjct: 371 VSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLK 430
Query: 431 GGGLTDAGVKHIKDLSSLTLLNL 453
G ++ + L+SL L+L
Sbjct: 431 GTQVSGSLPPQWSSLTSLRTLDL 453
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 97/413 (23%), Positives = 173/413 (41%), Gaps = 38/413 (9%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+S +F N Y+ L E+ + +R ++DL P ++ D + G LLS
Sbjct: 78 VSVDVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSWSKLGG-LLS 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR---NNA 118
V SG V+ + L++L C ++ L N L R+ +
Sbjct: 137 VTFSGCGVSGTLPASWGLMVRLRALTVGNCRHLTGSLPSEWSWLPNFQILVLRQLQLSGT 196
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+ ++ + +L++L++ I G +L KW S +K L
Sbjct: 197 LPAE----WSRVTSLLELEIVAAGDITG------------TLPAKW------SSIKSLRT 234
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L NL+ Q+S SG + +K L+ + S L +S++ L LNLE
Sbjct: 235 L-NLEGTQVS--GTLPSGWSEMKSLTSLELEGTQVSGT-----LPPGWSSIKSLRTLNLE 286
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
G V+ + ++ SL LNL Q+S +S++ SL L L +++ +
Sbjct: 287 GTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGW 346
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
+ +L +LNL+ + + +L+ L L TQV + S + +L ++ L
Sbjct: 347 SEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLE 406
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
T +S + G+ SL +L L Q++ + +SLT L LDL G +++
Sbjct: 407 GTQLSGSLPTEWRGIKSLTNLYLKGTQVSGSLPPQWSSLTSLRTLDLEGTQVS 459
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L + + ++ L LNLEG V+ + ++ SL LNL Q+S +S++ SL
Sbjct: 342 LPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLT 401
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L L +++ +G+ +L +L L + + L +L+ L+L TQV
Sbjct: 402 NLYLEGTQLSGSLPTEWRGIKSLTNLYLKGTQVSGSLPPQWSSLTSLRTLDLEGTQVSGR 461
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
S + + E++ L +S + + + L+ + L
Sbjct: 462 LPPEWSRMLSAENLQLEHCDLSGSLPPEWSAMPRLRLVGL 501
>gi|17548893|ref|NP_522233.1| GALA protein [Ralstonia solanacearum GMI1000]
Length = 981
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 175/402 (43%), Gaps = 33/402 (8%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 578 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 635
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L G L SL ++ I D ++
Sbjct: 636 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGIE 693
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ T L+SL IS + ++D A L + + LT
Sbjct: 694 ALAANTVLRSLDISGNDLSDQSAAAL--------------------------AANRTLTS 727
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L GC +T L+ + SL L + + D G ++ SL+ LNL N IT +
Sbjct: 728 LKANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQG 787
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L L+SL++ G GD G + L+G L L+L +V S G R L+ L S
Sbjct: 788 LYPLALSRTLKSLDVSRIGCGDRGALLLSGNRALTSLKLGFNRVSSEGARRLAANRTLVS 847
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
++L I + R LA L SLN+ ++ D AL LT LD+ R++
Sbjct: 848 LDLRGNTIDVAAARALANAEPLASLNVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRA 907
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
A L N L SL I + G + + D +SLT L+ N
Sbjct: 908 ARALANNPVLASLYISHNDIGPEGAQALADSASLTFLDARAN 949
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 51/303 (16%)
Query: 255 SLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
S+ +L+L+ C +S+ G +++ L L+L I + L +L SLNL
Sbjct: 578 SVRHLDLSGCTGSAVSEAGLAYLARL-PLASLDLSDTGIGNRGAQALAASASLTSLNLSG 636
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
GIG G L L L++S + ++G + L+G +L S+ L TGI DG + LA
Sbjct: 637 NGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTGIEDGGIEALA 696
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
+ L+SL++ ++D AAL + LT L G +T+ A L ++LR+LE+
Sbjct: 697 ANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGS 756
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNC-----------NLTDKTLE------------LIS 468
+ DAGV I +SL LNLS+N + T K+L+ L+S
Sbjct: 757 NSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGALLLS 816
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKP------------------------LKNLRSLTLES 504
G L SL + +R++S G R L + L SL +
Sbjct: 817 GNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVSD 876
Query: 505 CKV 507
C++
Sbjct: 877 CRL 879
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
Query: 294 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
L L+ L ++ L+L C + + GL L L L L+LSDT +G+ G + L+
Sbjct: 568 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 626
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+L S+NLS GI L + L +L++ A I + G AL LT L+L
Sbjct: 627 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTG 686
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I D G L LRSL+I G L+D + +LT L + C LT+ + ++
Sbjct: 687 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 745
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ L +L V ++ I AG+ + +LRSL L +T
Sbjct: 746 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPIT 784
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+ +L GL LESLN+ IGD G L +LK L + + +SG R L+ L
Sbjct: 90 RAIAYLAGLP-LESLNVAGAEIGDGGARLLAANPSLKSLNAASGGISASGARMLAESPTL 148
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 405
ES++L+ I D + LAG SL+ L + +TD G AL L LDL
Sbjct: 149 ESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDLGTRALALNPALVSLDLGNLVTET 208
Query: 406 -----------FGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNL 453
IT GA L ++L+SL + G L D GV+ + +LT LN+
Sbjct: 209 GNQVEQDGYDKTANNITAQGAWALAQNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNV 268
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+ N+T + + ++ L SL+V N + AG L ++L SL ++A
Sbjct: 269 AF-TNMTSASAKALADNPVLTSLSVRWNYGLDDAGAMELAMSRSLTSLDARDTGMSA 324
>gi|302754944|ref|XP_002960896.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
gi|300171835|gb|EFJ38435.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
Length = 637
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 143/490 (29%), Positives = 221/490 (45%), Gaps = 82/490 (16%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFA-GLINLVKLD 137
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A LV+LD
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELD 124
Query: 138 LERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKV 192
L C + L + L L L++ C I+D+ + L+ K LQ+ C +
Sbjct: 125 LRCCNSLGDLELAAVCQLGNLRKLDLTGCYMISDAGLGCLAA--GCKKLQVVVLKGCVGI 182
Query: 193 TDSGIAYL----KGLSISSVIFI-LCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAAC 246
+D+G+ +L K L+ V + + +R L++L L +LNL C V A
Sbjct: 183 SDAGLCFLASNCKELTTIDVSYTEITDDGVRC------LSNLPSLRVLNLAACSNVGDAG 236
Query: 247 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-------NEITDECLVHL 298
L S SL L+L+ C+ +++ G SK SL+ L LGF ++IT + L +
Sbjct: 237 LTRTST--SLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFCSPVKKRSQITGQLLEAV 293
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---------TQVGSSGLRHLSGL 349
LT +++L L C I +GL G C CL+LSD T G + + H G
Sbjct: 294 GKLTQIQTLKLAGCEIAGDGL-RFVGSC---CLQLSDLSLSKCRGVTDSGMASIFH--GC 347
Query: 350 TNLESINLS----FTGISDGSL-RKLAGLSSLK-----------------------SLNL 381
NL ++L+ T I+ ++ R AGL SLK L++
Sbjct: 348 KNLRKLDLTCCLDLTEITACNIARSSAGLVSLKIEACRILTENNIPLLMERCSCLEELDV 407
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGV 439
I D GL + L L L +++D+G ++ RN +L L++ G + DAGV
Sbjct: 408 TDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGV 467
Query: 440 KHIK-DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNL 497
I L +LNLS N+TD ++ IS L+ L L + + GL + L KNL
Sbjct: 468 ASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCK--GVGLEKKLPEFKNL 525
Query: 498 RSLTLESCKV 507
L L+ C +
Sbjct: 526 VELDLKHCGI 535
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 116/461 (25%), Positives = 199/461 (43%), Gaps = 77/461 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISC----SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
L+ L ++C +++T IA +S + I I+ + + + L L++
Sbjct: 350 LRKLDLTCCLDLTEITACNIARSSAGLVS--LKIEACRILTENNIPLLMERCSCLEELDV 407
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK---------------IG---- 278
C + A L+ ++ L L L C++SD+G E + +G
Sbjct: 408 TDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAGV 467
Query: 279 --------SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 328
L++LNL + ITD +V + L++L+ L + C G+G E L NL
Sbjct: 468 ASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCKGVGLEK--KLPEFKNL 525
Query: 329 KCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L+L +G G+ + NL+ +NLS+ IS+ +L L L L+++ L QI
Sbjct: 526 VELDLKHCGIGDRGMTSIVHCFPNLQQLNLSYCRISNAALVMLGNLRCLQNVKL--VQIG 583
Query: 388 DTGL----AALTSLTGLTHLDLF-GARITDSGAAYLRNFKN 423
D + AAL S L LF A + DS A + ++
Sbjct: 584 DVSIEVLAAALLSCVCLKKAKLFCNALLNDSINARYQQLED 624
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 39/258 (15%)
Query: 271 CEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN 327
C++F G S K + L +E+ L G+ ESL+L SC I DE L L G
Sbjct: 35 CKRFYAAGAESQKTMRLFNSELLPRALARHTGI---ESLDLSSCIKITDEDLA-LVG--- 87
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLS-------------FTGISDGSLRKLAGLS 374
EL+ T++ S GL + G T + L+ + D L + L
Sbjct: 88 ----ELAGTRLRSLGLARMGGFTVAGIVALARDCSALVELDLRCCNSLGDLELAAVCQLG 143
Query: 375 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR----ITDSGAAYL-RNFKNLRSLE 428
+L+ L+L I+D GL L + G L + + I+D+G +L N K L +++
Sbjct: 144 NLRKLDLTGCYMISDAGLGCLAA--GCKKLQVVVLKGCVGISDAGLCFLASNCKELTTID 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 487
+ +TD GV+ + +L SL +LNL+ N+ D L S T L+ L++S R +T+ G
Sbjct: 202 VSYTEITDDGVRCLSNLPSLRVLNLAACSNVGDAGLTRTS--TSLLELDLSCCRSVTNVG 259
Query: 488 LRHLKPLKNLRSLTLESC 505
+ L ++L+ L L C
Sbjct: 260 ISFLSK-RSLQFLKLGFC 276
>gi|428212495|ref|YP_007085639.1| hypothetical protein Oscil6304_2053 [Oscillatoria acuminata PCC
6304]
gi|428000876|gb|AFY81719.1| leucine-rich repeat (LRR) protein [Oscillatoria acuminata PCC 6304]
Length = 455
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 32/331 (9%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
D+ PL+GLTNL+ L++S +K+ D IA L GL+ + + + I + L +L
Sbjct: 90 DIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSYNKIEDIAS----LANLNN 143
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L + + L+ L +L L L+ ++ + F+ + L L+L N+I
Sbjct: 144 LKFLAIRDNQIEDVA--PLTNLTNLEVLWLDENKIGE--VASFASLTQLTQLHLSGNQIE 199
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
D + L LTNLESL L+ I D + +L + L L LS ++ L L GL
Sbjct: 200 D--VAPLANLTNLESLWLNENKIKD--VASLVSMTKLTQLYLSSNEI--EDLAPLKGLPE 253
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
+ + L+ I + + LA L++L +L L+ QI D +A L SLT L L L +I
Sbjct: 254 MAELQLNNNQIVN--VAPLASLTNLTTLELNENQIKD--IAPLASLTQLGFLQLTKNQIV 309
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+ + L L +L++ + D V + L++LT L L +N K + ++ LT
Sbjct: 310 N--ISPLATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGEN---QIKDVAPLASLT 362
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L SL++SN+ I + + PL NL LT
Sbjct: 363 ELTSLDLSNNEI-----KDIDPLANLTQLTF 388
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 184/398 (46%), Gaps = 60/398 (15%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GL+NL L N + + AGL NL LDL +I + +L L L+ L
Sbjct: 94 LAGLTNLEWLELSYNKI---EDIAPLAGLTNLEWLDL-SYNKIE-DIASLANLNNLKFLA 148
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
I+ N I D+ PL+ LTNL+ L + +K+ + ++S
Sbjct: 149 IR-DNQI--EDVAPLTNLTNLEVLWLDENKIGE----------VAS-------------- 181
Query: 222 LHVFLTSLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
SL +LT L+L G + A L +L+ L SL +LN N+ + + L
Sbjct: 182 ----FASLTQLTQLHLSGNQIEDVAPLANLTNLESL-WLNENKIK----DVASLVSMTKL 232
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L L NEI D L LKGL + L L++ I + + L L NL LEL++ Q+
Sbjct: 233 TQLYLSSNEIED--LAPLKGLPEMAELQLNNNQIVN--VAPLASLTNLTTLELNENQI-- 286
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+ L+ LT L + L+ I + S LA L+ L++L L +I D +A L SLT L
Sbjct: 287 KDIAPLASLTQLGFLQLTKNQIVNIS--PLATLTKLETLQLLYNEIKD--VAPLASLTNL 342
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
T L L +I D A L + L SL++ + D + + +L+ LT L+LS N
Sbjct: 343 TFLTLGENQIKD--VAPLASLTELTSLDLSNNEIKD--IDPLANLTQLTFLHLSDN---Q 395
Query: 461 DKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNL 497
K + ++ LT L L++ N+ I A L +L + N
Sbjct: 396 IKDVAPLASLTQLKHLHLRNNEIKDIARLPNLTQMDNF 433
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 33/251 (13%)
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D E SK+ L + +EI D + L GLTNLE L L I D + L GL N
Sbjct: 69 DRAQESLSKMTELGIRG---DEIKD--IAPLAGLTNLEWLELSYNKIED--IAPLAGLTN 121
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---LDAR 384
L+ L+LS ++ ++ L NL NL F I D + +A L++L +L LD
Sbjct: 122 LEWLDLSYNKI-----EDIASLANLN--NLKFLAIRDNQIEDVAPLTNLTNLEVLWLDEN 174
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+I + +A+ SLT LT L L G +I D A L N NL SL + + D V +
Sbjct: 175 KIGE--VASFASLTQLTQLHLSGNQIED--VAPLANLTNLESLWLNENKIKD--VASLVS 228
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
++ LT L LS N + D L + GL + L ++N++I + PL +L +LT +
Sbjct: 229 MTKLTQLYLSSN-EIED--LAPLKGLPEMAELQLNNNQIVNVA-----PLASLTNLT--T 278
Query: 505 CKVTANDIKRL 515
++ N IK +
Sbjct: 279 LELNENQIKDI 289
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 136/312 (43%), Gaps = 43/312 (13%)
Query: 27 AFRDCALQDLC-LGQYPGVNDKWMDV-----IASQGS--SLLSVDLSGSDVTDSGLIHLK 78
A RD ++D+ L + W+D +AS S L + LSG+ + D L
Sbjct: 148 AIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIEDVA--PLA 205
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ +NL+SL N +I D L ++ LT L N + + GL + +L L
Sbjct: 206 NLTNLESLWLNEN-KIKDVA--SLVSMTKLTQLYLSSNEI---EDLAPLKGLPEMAELQL 259
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ +VN+ L L +L N D+ PL+ LT L LQ++ +++ + S +
Sbjct: 260 N-----NNQIVNVAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPL 314
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLH--VFLT-------------SLQKLTLLNLEGCPV 242
A L L +++ + L L FLT SL +LT L+L +
Sbjct: 315 ATLTKLETLQLLYNEIKDVAPLASLTNLTFLTLGENQIKDVAPLASLTELTSLDLSNNEI 374
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 302
+D L+ L L +L+L+ Q+ D + + LK L+L NEI D + L LT
Sbjct: 375 KD--IDPLANLTQLTFLHLSDNQIKD--VAPLASLTQLKHLHLRNNEIKD--IARLPNLT 428
Query: 303 NLESLNLDSCGI 314
+++ ++D I
Sbjct: 429 QMDNFSVDGNPI 440
>gi|297171917|gb|ADI22904.1| hypothetical protein [uncultured Rhizobium sp. HF0500_35F13]
Length = 412
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+T L+ L LG++ YL+L+ + DDG +K+ L+VL L EITD L L
Sbjct: 58 LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDTGFSQLSNL 117
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
++L L +GD L L L+++ QV SGL HLSG+ NL+ + LS T
Sbjct: 118 SDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITD 388
I+D L L ++ L+ L L+ +ITD
Sbjct: 177 ITDKGLEHLQSITVLRDLQLNNTKITD 203
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 1/147 (0%)
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+T + L L L + L+L +GD+G+V++ L L+ L LS T++ +G LS L
Sbjct: 58 LTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEITDTGFSQLSNL 117
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
++L + S + DG+ LA + L L++ Q+TD+GL+ L+ + L L L
Sbjct: 118 SDLNQLTASEL-MGDGTTAALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTA 176
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTD 436
ITD G +L++ LR L++ +TD
Sbjct: 177 ITDKGLEHLQSITVLRDLQLNNTKITD 203
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 33/201 (16%)
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L + L+LSDT VG G+ H++ L L+ + LS T
Sbjct: 69 LGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGT------------------------ 104
Query: 385 QITDTGLAALTSLTGLTHL---DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+ITDTG + L++L+ L L +L G D A L + L L++ GG +TD+G+ H
Sbjct: 105 EITDTGFSQLSNLSDLNQLTASELMG----DGTTAALASATKLNFLDMTGGQVTDSGLSH 160
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+ + +L L LS+ +TDK LE + +T L L ++N++IT GL L+ L NL L
Sbjct: 161 LSGMKNLKRLTLSRTA-ITDKGLEHLQSITVLRDLQLNNTKITDEGLLLLEGLSNLNVLA 219
Query: 502 LESCKVTANDIKRLQSRDLPN 522
+ T N + +LQ+ LP+
Sbjct: 220 ITGTGTTLNGVTKLQAA-LPD 239
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 354 SINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
S+ + FT ++ L L L ++ L+L + D G+ + L GL L L G IT
Sbjct: 48 SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGMVHINKLEGLQVLVLSGTEIT 107
Query: 412 DSGAAYLRNFKNLRSL---EICGGGLTDAGVKHIKDLSSLTLLNL--SQNCNLTDKTLEL 466
D+G + L N +L L E+ G G T A L+S T LN +TD L
Sbjct: 108 DTGFSQLSNLSDLNQLTASELMGDGTTAA-------LASATKLNFLDMTGGQVTDSGLSH 160
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+SG+ L L +S + IT GL HL+ + LR L L + K+T
Sbjct: 161 LSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTKIT 202
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 159 SLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
S+ +++ N +T D++PL L + L +S + V D G+
Sbjct: 48 SVTVRFTNSALTGKDLEPLGKLGTVHYLDLSDTSVGDDGM-------------------- 87
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
V + L+ L +L L G +T LS L L L + + D +
Sbjct: 88 ------VHINKLEGLQVLVLSGTEITDTGFSQLSNLSDLNQLTASEL-MGDGTTAALASA 140
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
L L++ ++TD L HL G+ NL+ L L I D+GL +L + L+ L+L++T+
Sbjct: 141 TKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRTAITDKGLEHLQSITVLRDLQLNNTK 200
Query: 338 V 338
+
Sbjct: 201 I 201
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAI 119
+DLS + V D G++H+ LQ L + +I+D G L LS+L L+ +
Sbjct: 75 LDLSDTSVGDDGMVHINKLEGLQVLVLS-GTEITDTGFSQLSNLSDLNQLTASELMGDGT 133
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
TA A A L LD+ GL +L G+ L+ L + ITD ++ L +
Sbjct: 134 TA----ALASATKLNFLDMTGGQVTDSGLSHLSGMKNLKRLTLSRT-AITDKGLEHLQSI 188
Query: 180 TNLKSLQISCSKVTD 194
T L+ LQ++ +K+TD
Sbjct: 189 TVLRDLQLNNTKITD 203
>gi|149918909|ref|ZP_01907395.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
gi|149820283|gb|EDM79700.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
Length = 1503
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 113/251 (45%), Gaps = 32/251 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I D+ ++ LS LT L+ L +S + +T +G+ L ++
Sbjct: 90 IDDAMVEVLSKLTGLQILDLSRNAITATGVESLS-----------------------WIG 126
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L +L+L + +G A + L++L SL LNL+RC + G + K+G L+ L L
Sbjct: 127 GLTQLSLRSNQGVGDRGAEI--LASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSH 184
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N I DE V L L L L L C +GDEG L L L+ L L VG +
Sbjct: 185 NRILDEGAVALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFA 244
Query: 348 G-LTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTG-----L 400
G L L+ + L+ + + R L+G L L+ L+L +I D GL L G L
Sbjct: 245 GHLDKLQELELAVNQVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRRVAL 304
Query: 401 THLDLFGARIT 411
HLDL IT
Sbjct: 305 EHLDLIENGIT 315
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 4/227 (1%)
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 347
+I D + L LT L+ L+L I G+ +L+ + L L L Q VG G L+
Sbjct: 89 DIDDAMVEVLSKLTGLQILDLSRNAITATGVESLSWIGGLTQLSLRSNQGVGDRGAEILA 148
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L +LE +NL GI + L L L+ L L +I D G AL L L L+L
Sbjct: 149 SLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNRILDEGAVALAKLAKLRELELSV 208
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
++ D GAA L + L L + G + A L L L L+ N + ++
Sbjct: 209 CQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGHLDKLQELELAVN-QVGEEGARS 267
Query: 467 ISGLTG-LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
+SG+ G L L++S ++I AGL L R + LE + N I
Sbjct: 268 LSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRRVALEHLDLIENGI 314
>gi|334116578|ref|ZP_08490670.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333461398|gb|EGK90003.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 576
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
+DD E + S+ L L ++ ITD + L+ LTNL +LN ++ I D + +L L
Sbjct: 42 TDDAQEAEQILSSMTELALSYDHITD--ISFLRWLTNLTTLNFENNKITD--ISSLGSLT 97
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
NL L LS Q+ + + L LTNL +++LS+ I D S L L++L LNL+ I
Sbjct: 98 NLTRLNLSYNQI--TDISFLGSLTNLTTLDLSYNRIIDIS--SLGSLTNLTRLNLNINTI 153
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
TD +++L SLT LT LDL +ITD + L + NL L++ +TD + ++ L+
Sbjct: 154 TD--ISSLGSLTNLTRLDLLSNQITDLSS--LGSLTNLTRLDLSSNPITD--INALRKLT 207
Query: 447 SLTLLNLSQNCNLTD 461
+LT+L++ N +T+
Sbjct: 208 NLTILDILSNTRITN 222
>gi|290984930|ref|XP_002675179.1| predicted protein [Naegleria gruberi]
gi|284088774|gb|EFC42435.1| predicted protein [Naegleria gruberi]
Length = 330
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 5/255 (1%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+ +LT L + G + S+S L L L+++ QL D G + S++ L LN+ N
Sbjct: 77 VMQLTRLCIAGNNIGEKGAKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGN 136
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
ITD+ + L L L LN+ S I EG+ +LT L L L++S + S + +S
Sbjct: 137 RITDKGAIFLSDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISE 196
Query: 349 LTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+ L ++NLS+ GS +R + + +LK+L I + + L L+
Sbjct: 197 MDQLTNLNLSYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLN 256
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ + I S A + + L L+I + D G KHI ++ LT LN+ + C + +
Sbjct: 257 IRSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNV-EGCRINSEGT 315
Query: 465 ELISGLTGLVSLNVS 479
E + + L LN+S
Sbjct: 316 EYLKQMKQLTYLNIS 330
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 129/288 (44%), Gaps = 21/288 (7%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
++ LT L++ + S+ + L L + + + G + S++ L L++ FN
Sbjct: 53 MKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQLTQLTTLDVSFN 112
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
++ D + L+ L LN+ I D+G + L+ L L+ L +S + G++ L+
Sbjct: 113 QLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTILLEGIKSLTN 172
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L L +++S+ I + ++ + L +LNL +G
Sbjct: 173 LKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSYND--------------------YGW 212
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+G Y+ KNL++L G + +IK++ L LN+ ++ + + +LIS
Sbjct: 213 GSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNI-RSSYIGSSSAKLIS 271
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
+ L L++S + I G +H+ + L SL +E C++ + + L+
Sbjct: 272 SMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGTEYLK 319
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 25/271 (9%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
++G+++ + G + + L +LD +F Q+ D G + + LS LT L+ R N IT +G
Sbjct: 85 IAGNNIGEKGAKSISQLTQLTTLDVSFN-QLCDYGTKFISQLSRLTDLNIR-GNRITDKG 142
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L L L++ T + G+ +L L +L L+I + N I S + +S + L
Sbjct: 143 AIFLSDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNN-ILPSYAQTISEMDQLT 201
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
+L +S D G S S+ + +C M + L L G +
Sbjct: 202 NLNLS---YNDYGWG-----SDSNGVRYICEM--------------KNLKTLTFGGICIR 239
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
+ + + L LN+ + + S + L L++ +NEI D H+ +
Sbjct: 240 QYIFNYIKEMKQLACLNIRSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQ 299
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
L SLN++ C I EG L + L L +S
Sbjct: 300 LTSLNVEGCRINSEGTEYLKQMKQLTYLNIS 330
>gi|95108203|emb|CAD17823.3| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum GMI1000]
Length = 1035
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 175/402 (43%), Gaps = 33/402 (8%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 689
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L G L SL ++ I D ++
Sbjct: 690 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELR-DTGIEDGGIE 747
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ T L+SL IS + ++D A L + + LT
Sbjct: 748 ALAANTVLRSLDISGNDLSDQSAAAL--------------------------AANRTLTS 781
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L GC +T L+ + SL L + + D G ++ SL+ LNL N IT +
Sbjct: 782 LKANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPITPQG 841
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L L+SL++ G GD G + L+G L L+L +V S G R L+ L S
Sbjct: 842 LYPLALSRTLKSLDVSRIGCGDRGALLLSGNRALTSLKLGFNRVSSEGARRLAANRTLVS 901
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
++L I + R LA L SLN+ ++ D AL LT LD+ R++
Sbjct: 902 LDLRGNTIDVAAARALANAEPLASLNVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRA 961
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
A L N L SL I + G + + D +SLT L+ N
Sbjct: 962 ARALANNPVLASLYISHNDIGPEGAQALADSASLTFLDARAN 1003
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 51/303 (16%)
Query: 255 SLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
S+ +L+L+ C +S+ G +++ L L+L I + L +L SLNL
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARL-PLASLDLSDTGIGNRGAQALAASASLTSLNLSG 690
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
GIG G L L L++S + ++G + L+G +L S+ L TGI DG + LA
Sbjct: 691 NGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTGIEDGGIEALA 750
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
+ L+SL++ ++D AAL + LT L G +T+ A L ++LR+LE+
Sbjct: 751 ANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGS 810
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNC-----------NLTDKTLE------------LIS 468
+ DAGV I +SL LNLS+N + T K+L+ L+S
Sbjct: 811 NSIGDAGVLTIARNASLRSLNLSRNPITPQGLYPLALSRTLKSLDVSRIGCGDRGALLLS 870
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKP------------------------LKNLRSLTLES 504
G L SL + +R++S G R L + L SL +
Sbjct: 871 GNRALTSLKLGFNRVSSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVSD 930
Query: 505 CKV 507
C++
Sbjct: 931 CRL 933
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 6/219 (2%)
Query: 294 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
L L+ L ++ L+L C + + GL L L L L+LSDT +G+ G + L+
Sbjct: 622 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 680
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+L S+NLS GI L + L +L++ A I + G AL LT L+L
Sbjct: 681 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALAGSRSLTSLELRDTG 740
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I D G L LRSL+I G L+D + +LT L + C LT+ + ++
Sbjct: 741 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 799
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ L +L V ++ I AG+ + +LRSL L +T
Sbjct: 800 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNPIT 838
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+ +L GL LESLN+ IGD G L +LK L + + +SG R L+ L
Sbjct: 144 RAIAYLAGLP-LESLNVAGAEIGDGGARLLAANPSLKSLNAASGGISASGARMLAESPTL 202
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 405
ES++L+ I D + LAG SL+ L + +TD G AL L LDL
Sbjct: 203 ESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDLGTRALALNPALVSLDLGNLVTET 262
Query: 406 -----------FGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNL 453
IT GA L ++L+SL + G L D GV+ + +LT LN+
Sbjct: 263 GNQVEQDGYDKTANNITAQGAWALAQNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNV 322
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+ N+T + + ++ L SL+V N + AG L ++L SL ++A
Sbjct: 323 AF-TNMTSASAKALADNPVLTSLSVRWNYGLDDAGAMELAMSRSLTSLDARDTGMSA 378
>gi|383852952|ref|XP_003701989.1| PREDICTED: F-box/LRR-repeat protein 14-like [Megachile rotundata]
Length = 479
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 141/304 (46%), Gaps = 74/304 (24%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T++GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 240 NITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 282
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 283 AGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRE 342
Query: 185 LQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L + SC ++D G+AYL G ISS+ C I +H+ L NL+
Sbjct: 343 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHI------SQGLFNLKS-- 394
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
L+L+ CQ+SD+G K +K L
Sbjct: 395 -----------------LSLSACQISDEGICKIAKT-----------------------L 414
Query: 302 TNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
+LE+LN+ C + D+GL + + +LKC++L T++ ++GL + L L ++NL
Sbjct: 415 HDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLG 474
Query: 359 FTGI 362
+
Sbjct: 475 LWHV 478
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 161/347 (46%), Gaps = 64/347 (18%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L G+ NL++L +S C +TD+G+ ++ F LT
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGL------------------------INAFCQEYSTLTE 206
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LNL C + +LG + N L GC + G +L + +N
Sbjct: 207 LNLSLCKQVSDI-----SLGRIVQYLKNLEHLELGGCCNITNTG---LLCIAWN------ 252
Query: 295 LVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLR 344
L L+ L+L SC + D G+ +L G+ L+ L L D Q + LR
Sbjct: 253 ------LKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFALEHLSLQDCQRLSDEALR 306
Query: 345 HLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGL 400
H+S GLT L+SINLSF I+D ++ LA +SSL+ LNL + I+D G+A L + +
Sbjct: 307 HISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRI 366
Query: 401 THLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNC 457
+ LD+ F +I D ++ + NL+SL + ++D G+ K K L L LN+ Q
Sbjct: 367 SSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCS 426
Query: 458 NLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
LTDK L I+ + L +++ +RI++ GL + L L +L L
Sbjct: 427 RLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 473
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 168/352 (47%), Gaps = 56/352 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL--KGLMKLES 159
RG+ + LS RR G+ NL L+L C I GL+N + L
Sbjct: 153 RGVKRVQVLSLRRGLG------DVLRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTE 206
Query: 160 LNIKWCNCITDSDM-KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ++D + + + L NL+ L++ C +T++G
Sbjct: 207 LNLSLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNTG--------------------- 245
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALG--SLFYLNLNRCQ-LS 267
L C+ +L+KL L+L C + A ++ +A G +L +L+L CQ LS
Sbjct: 246 -LLCI---AWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFALEHLSLQDCQRLS 301
Query: 268 DDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT- 323
D+ S + +LK +NL F ITD + HL +++L LNL SC I D G+ L
Sbjct: 302 DEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRELNLRSCDNISDIGMAYLAE 361
Query: 324 GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 380
G + L++S ++G L H+S GL NL+S++LS ISD + K+A L L++LN
Sbjct: 362 GGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLN 421
Query: 381 L-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
+ ++TD GL + S+ L +DL+G RI+ +G + L +L +
Sbjct: 422 IGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 473
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 94/351 (26%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGL------EH----------------------LRGLSNL 108
L+ NL++L+ + C I+D GL E+ ++ L NL
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLGRIVQYLKNL 230
Query: 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LE 158
L IT G+ A L L +LDL C ++ G+ +L G+ + LE
Sbjct: 231 EHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFALE 290
Query: 159 SLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMI 216
L+++ C ++D ++ +S GLT LKS+ +S C +TDSG+ +L +S
Sbjct: 291 HLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMS------------ 338
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
L LNL C D++S +G + L++ G S+
Sbjct: 339 --------------SLRELNLRSC-------DNISDIGMAY--------LAEGG----SR 365
Query: 277 IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLEL 333
I SL V F ++I D+ LVH+ +GL NL+SL+L +C I DEG+ + L +L+ L +
Sbjct: 366 ISSLDV---SFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNI 422
Query: 334 SD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 381
+++ GL ++ + +L+ I+L T IS L ++ L L +LNL
Sbjct: 423 GQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 473
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 36/244 (14%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 348
L+G+ NLE+LNL C I D GL+N LT L C ++SD +G R +
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLG----RIVQY 226
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L I++ L +A L LK L+L + Q++D G+A L +
Sbjct: 227 LKNLEHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGN 286
Query: 399 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 451
L HL L R++D ++ L+S+ +C +TD+GVKH+ +SSL L
Sbjct: 287 FALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVC---ITDSGVKHLAKMSSLREL 343
Query: 452 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
NL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C+++
Sbjct: 344 NLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQIS 403
Query: 509 ANDI 512
I
Sbjct: 404 DEGI 407
>gi|195430566|ref|XP_002063325.1| GK21848 [Drosophila willistoni]
gi|194159410|gb|EDW74311.1| GK21848 [Drosophila willistoni]
Length = 543
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 169/397 (42%), Gaps = 112/397 (28%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 207 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 248
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 249 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 308
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 309 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 368
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G
Sbjct: 369 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 428
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
I+S+ C I S Q LT + L L L+LN+
Sbjct: 429 GINSLDVSFCDKI-----------SDQALTHIA--------------QGLYRLRSLSLNQ 463
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNL 322
CQ++D G K + K L LE+LN+ C I D+GL L
Sbjct: 464 CQITDQGMLKIA-----------------------KSLQELENLNIGQCSRITDKGLQTL 500
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 501 AEDLTNLKTIDLYGCTQLTSKGIDIIMKLPKLQKLNL 537
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 157/298 (52%), Gaps = 28/298 (9%)
Query: 232 LTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL 285
LT LNL GC A ++ A L +L L+L+ C Q++D + ++ + +L+ L L
Sbjct: 241 LTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLEL 299
Query: 286 GF--NEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELS 334
G N L+ GL L+ LNL SC I D+G+ +L G L+ L L
Sbjct: 300 GGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQ 359
Query: 335 DTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 390
D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL + I+D G
Sbjct: 360 DCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIG 419
Query: 391 LAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLS 446
+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+ I K L
Sbjct: 420 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLQ 479
Query: 447 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L LN+ Q +TDK L+ L LT L ++++ +++TS G+ + L L+ L L
Sbjct: 480 ELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGIDIIMKLPKLQKLNL 537
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 171/377 (45%), Gaps = 82/377 (21%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 217 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 268
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
++L++ C ITD+ + ++ L NL++L++ C +T++G+
Sbjct: 269 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLL----------------- 311
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSL--FYLNLNRCQ- 265
+ L+KL LNL C + A +A G+L YL L CQ
Sbjct: 312 --------LIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQR 363
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 364 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 423
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLN 380
T G SG + S+++SF ISD +L +A GL L+SL+
Sbjct: 424 TE--------------GGSG---------INSLDVSFCDKISDQALTHIAQGLYRLRSLS 460
Query: 381 LDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTD 436
L+ QITD G+ + SL L +L++ +RITD G L + NL+++++ G LT
Sbjct: 461 LNQCQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLTS 520
Query: 437 AGVKHIKDLSSLTLLNL 453
G+ I L L LNL
Sbjct: 521 KGIDIIMKLPKLQKLNL 537
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 237 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 295
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 401
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 296 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 351
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 352 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 410
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 411 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 467
>gi|290994554|ref|XP_002679897.1| leucine rich repeat domain protein [Naegleria gruberi]
gi|284093515|gb|EFC47153.1| leucine rich repeat domain protein [Naegleria gruberi]
Length = 331
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 155/332 (46%), Gaps = 16/332 (4%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
PLS T L +I V I+Y++ I CS+I + FL + +
Sbjct: 8 PLSQQTELGKKEIFSDDVCFEIISYIEN---PKFILYKCSLISK-----QFLNVINERAK 59
Query: 235 LNLEGCPVTAACLDS------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L++E +T + ++ L + SL ++++ E + +L L +G N
Sbjct: 60 LSIEFKNITDSKFNAVRKSQFLESFTSLKFISVEEV-FDIKYLELVGLMRNLTKLCVGGN 118
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
EI + + L SL +DS IG EG ++G+ L L++S + + G + +SG
Sbjct: 119 EIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAKSISG 178
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ +L +N+S + I ++ ++ + +L L++ + G +++ + LT+L +
Sbjct: 179 MDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGAKSISQMKQLTYLKAYTN 238
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+ GA ++ L +L IC + D G K I + +LT L + N + + + IS
Sbjct: 239 SLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDLRIDGN-RIGPEGAKSIS 297
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ L L++S +RI G++++K +K+L L
Sbjct: 298 EMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 53/264 (20%)
Query: 91 CIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
C+ ++ GL+ + +S L+ + ++ I +G K +G+ L +LD+
Sbjct: 114 CVGGNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDIS--------- 164
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
N + K +SG+ +L L IS S + GI SIS
Sbjct: 165 ----------------ANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIK-----SIS-- 201
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
++ LT L++ G + A S+S + L YL L
Sbjct: 202 -------------------EMKNLTKLDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRS 242
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G S++ L LN+ +NEI DE + + NL L +D IG EG +++ + L
Sbjct: 243 EGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDLRIDGNRIGPEGAKSISEMKQL 302
Query: 329 KCLELSDTQVGSSGLRHLSGLTNL 352
+ L++S ++G G++++ G+ +L
Sbjct: 303 RLLDISFNRIGEEGVKYVKGMKHL 326
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 355 INLSFTGISDG---SLRKLAGLSSLKSLN-LDARQITDTGLAALTSLT-GLTHLDLFGAR 409
+++ F I+D ++RK L S SL + ++ D L L LT L + G
Sbjct: 60 LSIEFKNITDSKFNAVRKSQFLESFTSLKFISVEEVFDIKYLELVGLMRNLTKLCVGGNE 119
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I GA + FK L SL I + G K I ++ LT L++S N L + + ISG
Sbjct: 120 IGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANY-LCAEGAKSISG 178
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ L LN+S+S I G++ + +KNL L +
Sbjct: 179 MDHLTFLNISSSNIDQEGIKSISEMKNLTKLDI 211
>gi|300693896|ref|YP_003749869.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299075933|emb|CBJ35242.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum PSI07]
Length = 1002
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 171/371 (46%), Gaps = 12/371 (3%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISC---SKVTDSGIAYLKGLSISSVIFILC 213
LESL+ +T +D+K L +++ L +S + V+ +G+AYL G + S+
Sbjct: 555 LESLSFH--GNLTIADLKALP--PSVRHLDLSGCTGTAVSGAGLAYLAGRKLESLDLSDT 610
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+ R L L S LT LNL G ++ A + + SL LNL +SD G E
Sbjct: 611 PIGDRGAQL---LASSTSLTSLNLSGNEISDAGAAAFADNTSLTSLNLRGNHISDAGAEA 667
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
+ L L++ N I + + L +L SLNL S I DEG+ L L+ L++
Sbjct: 668 LGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLDI 727
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
S + G+ L+ L S+ + +++ ++LA + SL +L L + I D G+ A
Sbjct: 728 SHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQA 787
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
+ L LDL I G L + L SL++ G D G + SLTLL L
Sbjct: 788 IVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLKL 847
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
N + + +++++ L+SL++S + I R L L SL SC + +
Sbjct: 848 GSN-GIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDDAAVS 906
Query: 514 RL-QSRDLPNL 523
L +SR L +L
Sbjct: 907 ALAESRSLTSL 917
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 182/404 (45%), Gaps = 13/404 (3%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG + V+ +GL +L L+SLD + I D G + L ++LTSL+
Sbjct: 575 SVRHLDLSGCTGTAVSGAGLAYLAG-RKLESLDLSDT-PIGDRGAQLLASSTSLTSLNLS 632
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I+ G AFA +L L+L G L L SL++ N I ++ ++
Sbjct: 633 -GNEISDAGAAAFADNTSLTSLNLRGNHISDAGAEALGRNTVLTSLDVS-ANPIGNTGVQ 690
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ +L SL + + + D G+ L S+ + + F Q TL
Sbjct: 691 ALASSRSLTSLNLCSTWIEDEGVEALA----SNTVLRSLDISHNRFGAQFAAELAQNRTL 746
Query: 235 LNLEG--CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+L+ C +T L+++ SL L L+ + D G + + SL+ L+L N I
Sbjct: 747 ASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGL 806
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
L L L SL++ G GD G + L+ +L L+L + S G++ L+ +L
Sbjct: 807 GGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLKLGSNGIASEGVQILAANRSL 866
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S++LS I + R LA L SLN + + D ++AL LT LD+ R+
Sbjct: 867 ISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDDAAVSALAESRSLTSLDVSKNRLFS 926
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
GA L + L SL I + G + + +SLT L+ N
Sbjct: 927 PGARALAGNRVLTSLNISHNRIGFHGAAALAESTSLTFLDARAN 970
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 180/412 (43%), Gaps = 50/412 (12%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT--RIHG-GLVNLKGLMKLESLNI 162
S L SLSF N +T +KA + LDL CT + G GL L G KLESL++
Sbjct: 553 SALESLSFHGN--LTIADLKALPPSVR--HLDLSGCTGTAVSGAGLAYLAG-RKLESLDL 607
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-YLKGLSISSVIFILCSMIIRLFC 221
I D + L+ T+L SL +S ++++D+G A + S++S + L
Sbjct: 608 S-DTPIGDRGAQLLASSTSLTSLNLSGNEISDAGAAAFADNTSLTS---------LNLRG 657
Query: 222 LHVFLTSLQKL------TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
H+ + L T L++ P+ + +L++ SL LNL + D+G E +
Sbjct: 658 NHISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALA 717
Query: 276 KIGSLKVLNLGFNE------------------------ITDECLVHLKGLTNLESLNLDS 311
L+ L++ N +T+ L + +L +L L S
Sbjct: 718 SNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSS 777
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
I D G+ + +L+ L+LS +G GL L+ L S+++S G D L+
Sbjct: 778 NLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLS 837
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
SL L L + I G+ L + L LDL G I A L L SL
Sbjct: 838 KSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASS 897
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
GL DA V + + SLT L++S+N L ++G L SLN+S++RI
Sbjct: 898 CGLDDAAVSALAESRSLTSLDVSKN-RLFSPGARALAGNRVLTSLNISHNRI 948
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 109/387 (28%), Positives = 175/387 (45%), Gaps = 11/387 (2%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+DLS + + D G L ++L SL+ + +ISD G ++LTSL+ R
Sbjct: 599 GRKLESLDLSDTPIGDRGAQLLASSTSLTSLNLSGN-EISDAGAAAFADNTSLTSLNLRG 657
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDM 173
N+ I+ G +A L LD+ + G+ L L SLN+ W I D +
Sbjct: 658 NH-ISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTW---IEDEGV 713
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+ L+ T L+SL IS ++ A L + +++S+ CS+ + L S++ L
Sbjct: 714 EALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQ---LASIRSL 770
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T L L + A + ++ SL L+L++ + G + +L L++ D
Sbjct: 771 TALELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGD 830
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+ L +L L L S GI EG+ L +L L+LS + R L+ L
Sbjct: 831 RGGLVLSKSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRL 890
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S+N S G+ D ++ LA SL SL++ ++ G AL LT L++ RI
Sbjct: 891 ASLNASSCGLDDAAVSALAESRSLTSLDVSKNRLFSPGARALAGNRVLTSLNISHNRIGF 950
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGV 439
GAA L +L L+ G+ +AG
Sbjct: 951 HGAAALAESTSLTFLDARANGIGEAGA 977
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 174/384 (45%), Gaps = 35/384 (9%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L P + D+ ++AS +SL S++LSG++++D+G D ++L SL+
Sbjct: 602 LESLDLSDTP-IGDRGAQLLASS-TSLTSLNLSGNEISDAGAAAFADNTSLTSLNLRGN- 658
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
ISD G E L + LTSL N I G++A A +L L+L G+ L
Sbjct: 659 HISDAGAEALGRNTVLTSLDVSAN-PIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALA 717
Query: 153 GLMKLESLNI----------------------KWCNC-ITDSDMKPLSGLTNLKSLQISC 189
L SL+I K +C +T++ + L+ + +L +L++S
Sbjct: 718 SNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSS 777
Query: 190 SKVTDSGI-AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE--GCPVTAAC 246
+ + D+G+ A ++ S+ S L I L LH S + LT L++ GC
Sbjct: 778 NLIDDAGVQAIVRNASLRS--LDLSQNPIGLGGLHALALS-RTLTSLDVSCIGCGDRGGL 834
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
+ LS SL L L ++ +G + + SL L+L N I L L S
Sbjct: 835 V--LSKSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLAS 892
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
LN SCG+ D + L +L L++S ++ S G R L+G L S+N+S I
Sbjct: 893 LNASSCGLDDAAVSALAESRSLTSLDVSKNRLFSPGARALAGNRVLTSLNISHNRIGFHG 952
Query: 367 LRKLAGLSSLKSLNLDARQITDTG 390
LA +SL L+ A I + G
Sbjct: 953 AAALAESTSLTFLDARANGIGEAG 976
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 122/286 (42%), Gaps = 26/286 (9%)
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-----DECLVHLKGLTNLESLNLDS 311
+Y NL L + K +L+L +E T + + +L L LESLN+
Sbjct: 104 YYPNLESVHLKGNFTLADLKALPATLLHLDLSECTGSARSSKAIAYLASLP-LESLNVKG 162
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
IGD G L +LK L ++ +G++G +L+ L S++L+ I D ++ LA
Sbjct: 163 AQIGDHGARLLAANPSLKTLNMAIGGIGAAGAANLAESRTLMSLDLTQNKIGDKGVQALA 222
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------------------FGARITDS 413
SL +L + +TD GL AL LT LDL IT
Sbjct: 223 ASRSLTNLTVSNCLVTDIGLEALARSRTLTSLDLGNLVSATYDEAEQADFDRTANDITVK 282
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
G L +L SL + G DAGV + +LT LN++ N+ + ++ L
Sbjct: 283 GTRALVQSPSLTSLSVQGNLCGDAGVLELAKSRTLTHLNVAF-TNMGPVSARALARNPVL 341
Query: 474 VSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
SLNV N I + G L ++L SL + A + L+++
Sbjct: 342 TSLNVRWNYDIGTEGALELTKSESLISLDARDASIGAEGVLALEAK 387
>gi|12581504|gb|AAG59625.1| GU1 [Trypanosoma brucei]
gi|261333153|emb|CBH16148.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 846
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 119/445 (26%), Positives = 203/445 (45%), Gaps = 53/445 (11%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT--------LL 235
L ++ + VT+ GI+ L K +S+ V C +I L L L +LQ++ +
Sbjct: 538 LDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITHLEFLRP-LPNLQQVVADQMNLTDIG 596
Query: 236 NLEGCP-VTAACLDSLSALGS--------LFYLNLNRCQLSDDGCEK-FSKIGSLKVLNL 285
L G P + L+ LG+ L L+L + +S+ G + SL+ L++
Sbjct: 597 GLTGAPSLRRVTLNESKRLGTVGEVRLPYLQELSLRKSTISNAGIRSLLASCRSLQHLDM 656
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
E L L L NL L L + + E + ++ NL+ L++++ + +
Sbjct: 657 QHCHSVTE-LSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTEC-ADITDVNC 714
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD 404
LS L +LE I+LS T ++ ++ L+ +L+ LNL + R +T+ L L L L
Sbjct: 715 LSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTNVN--CLGKLPFLRELH 772
Query: 405 LFGARITDSGAAYLRNFKNLRSLEI 429
L +TD G A L N L +L +
Sbjct: 773 LEKTNVTDKGIAGLSNCIQLETLAL 797
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 123/518 (23%), Positives = 220/518 (42%), Gaps = 98/518 (18%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ----------------------ISDGGLEHLRGLS 106
+TD GL + C +LQ + + C++ I + G++ LR L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNCMKLRSLNCLGSLRNLRTLIVSRNRIPEEGVQGLRKLR 322
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+L L F N TA ++ + L +LV+LDL G + +L+ L + C
Sbjct: 323 DLEVLRFSVFNRPTA--VEFISSLGSLVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCR 380
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL---FCLH 223
+ SD++ L+ LT L++L +S + V + L+ C ++ L +C
Sbjct: 381 RV--SDVRWLAALTCLRTLDLSHTNVRSRWLESLRA----------CRYLVELNVAYCRD 428
Query: 224 V----FLTSLQKLTLLNLEGCPVTAACLDS-----------------------LSALGSL 256
V FL+ L+ L L+L G + LD L L L
Sbjct: 429 VVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKDLHFLETLREL 488
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD-ECLVHLKGLTNLESLNLDSCGI 314
L+ R + D + L+ L+ + + +TD +C L+GL NL++L+L +
Sbjct: 489 VKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTDVKC---LEGLRNLKTLDLAGTNV 545
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-------GSL 367
+EG+ +L +L+ +++S+ + + L L L NL+ + ++D SL
Sbjct: 546 TNEGISSLPKCVSLEYVDVSECCL-ITHLEFLRPLPNLQQVVADQMNLTDIGGLTGAPSL 604
Query: 368 RKL-------------AGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-ITD 412
R++ L L+ L+L I++ G+ + L S L HLD+ +T+
Sbjct: 605 RRVTLNESKRLGTVGEVRLPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTE 664
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
A L NLR L + +T + HI +L L +++ ++TD + +S L
Sbjct: 665 LSA--LSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSALQS 720
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
L +++S + +T+ G++ L LR L L C+ N
Sbjct: 721 LEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTN 758
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 182/405 (44%), Gaps = 17/405 (4%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+A+T + M + +L L + C + L ++ ++ + N + S +
Sbjct: 139 KSAVTNEMMHIVSMARDLESLTVRNCFSESEASLCSVTSILNSRATNRRDARTFYLSGVT 198
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
L L L+SL + + +++ ++Y + ++ V+ C ++ L C +LQ+LT
Sbjct: 199 SLGVLRCLRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLVSLECF----AALQRLT 254
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L++ C +T L +S SL Y+ L+ C +L C + +L+ L + N I +
Sbjct: 255 HLSVLNCTITDEGLPPISKCFSLQYVMLDNCMKLRSLNC--LGSLRNLRTLIVSRNRIPE 312
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E + L+ L +LE L S + ++ L +L L+L D VG +G L
Sbjct: 313 EGVQGLRKLRDLEVLRF-SVFNRPTAVEFISSLGSLVELDLRDNWVGDAGCASFVHCRQL 371
Query: 353 ESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
+ + LS +SD +R LA L+ L++L+L + L +L + L L++ R
Sbjct: 372 QQLKLSCCRRVSD--VRWLAALTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDV 429
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
++L + L+ L++ G + + + I LT L L ++C+ + K L + L
Sbjct: 430 -VEVSFLSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFL-LLKDCS-SVKDLHFLETLR 486
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
LV L+ + I A + + K L L+ C + D+K L+
Sbjct: 487 ELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLT-DVKCLE 530
>gi|281206083|gb|EFA80272.1| hypothetical protein PPL_07099 [Polysphondylium pallidum PN500]
Length = 1036
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 194/424 (45%), Gaps = 53/424 (12%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLIN 132
++L +C+N FN I G L +LRGL NLT+ S IT +K A N
Sbjct: 262 FLNLSNCTNFTLAQFNKTI----GRLRNLRGL-NLTNCSH-----ITDDSVKNIAKNCAN 311
Query: 133 LVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC- 189
L +L L C + + +K L+ L++ C +TD + +S NLK+L+ C
Sbjct: 312 LEELHLNNCYLLTDNSITFLVKRCKNLKVLSMSRCERVTDYTLFEISK--NLKALESICI 369
Query: 190 ---SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
VTD G+A LK L+I S F ++ + ++L +LN+ A C
Sbjct: 370 NRMKYVTDKGLADLKNLNIKS--FYAYETLLTDQSISELALRWRQLEVLNV------AKC 421
Query: 247 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFS---------KIGSLKVLNL-GFNEITDECL 295
++ + S L+ + Q L +GC K S K ++VL + ITDE +
Sbjct: 422 INVTNQALSTVALHCPQIQKLFVNGCPKISSEAIVLVAQKCPLIRVLRIDNCPNITDEAI 481
Query: 296 VHLKGLTNLESLNLDS-CGIGDEGLV-------NLTGLCNLKCLELSDTQVGSSGLRHLS 347
+ L+ L +L +LN+ + C ++ L+ NL L +C +SD V G +H
Sbjct: 482 LALEFLKSLHTLNVSNLCKFNEQSLIKILPSLPNLEQLFLYQCPRISDATVAVIG-QHCP 540
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDL 405
L L F G D + L SLK LNL + I D + +L T LTGL L L
Sbjct: 541 NLKVLRLDQSIFPG--DAGVSCLVNCKSLKGLNLSNLENIHDQTIISLSTELTGLQKLYL 598
Query: 406 FGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
G + +TD+ + N + + L I ++ + ++ L +L++LN+S N TDK
Sbjct: 599 TGCKGLTDASLDAITNIRTIEILRINDSFQFSEDALCNLAKLQNLSVLNMSGCVNTTDKV 658
Query: 464 LELI 467
L+L+
Sbjct: 659 LDLL 662
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 103/452 (22%), Positives = 186/452 (41%), Gaps = 75/452 (16%)
Query: 67 SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
++ D +I L + + LQ L C ++D L+ + + + L + + +
Sbjct: 576 ENIHDQTIISLSTELTGLQKLYLTGCKGLTDASLDAITNIRTIEILRINDSFQFSEDALC 635
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L NL L++ C +++L +L L + CITD + P+
Sbjct: 636 NLAKLQNLSVLNMSGCVNTTDKVLDLLICYCQQLTQLYLSNLPCITDRILPPMLASLLKL 695
Query: 184 SLQI--SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L CS VTD+ + L+ L+ L + N G
Sbjct: 696 RLLRIDGCSNVTDNALIGLR------------------------FNGLRYLEVFNCSGTF 731
Query: 242 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGF-NEITDECLVH- 297
+ L S+ + +L L + C+ ++D+G +K + +L+VL + +ITD+ +
Sbjct: 732 IGDEGLYSIVSQSALRELYMWNCETITDNGLKKIDMYLQNLEVLRVDRCKKITDKGIRSI 791
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNL----------------------------- 328
L+ L +LN+ +GD+ L + G C L
Sbjct: 792 LQKAVLLRTLNISHTNLGDDTLTTVAGYCKLLKKLICTNLSRISDSGVSAVALQCPLLKM 851
Query: 329 ----KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-D 382
+C ++SDT V +R S SIN + I++ S+ KL+ G LK +NL +
Sbjct: 852 IDVSRCFKISDTAVIELSVR--SKYLKKFSIN-GNSKITNTSIIKLSVGCPRLKVVNLQE 908
Query: 383 ARQITDTGLAALTSL-TGLTHLDL-FGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGV 439
++ + G+ AL++ +T L++ +TD S R L+SL L DAGV
Sbjct: 909 CSKVGEVGILALSTYCKYITTLNVSHCPLVTDLSIVGIGRECLGLKSLNASHTLLGDAGV 968
Query: 440 KHIKDLSSLTLLNLS-QNCNLTDKTLELISGL 470
+ S++ L L Q+ N+TD+ L +++ +
Sbjct: 969 IEVAVRSNINLEFLDIQSTNVTDQALSMVAQM 1000
>gi|343416403|emb|CCD20380.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 1256
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 206/458 (44%), Gaps = 77/458 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L + L+ +V D+ L L L+ L N C +I+D
Sbjct: 584 TTLQKLCLANVNVDDAFLRDLTCHERLRELSLNSCTRITD-------------------- 623
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ A + +L LDL CT I GL L GL L+ L ++ + + D+ ++ L
Sbjct: 624 -------VSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQELCLRQLS-VDDAFLRDL 675
Query: 177 SGLTNLKSLQI-SCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKL 232
+ L+ L + SC+++TD S +A ++ L I + C+ I+R LHV LT+LQ+L
Sbjct: 676 TCHERLRRLSLNSCTRITDVSPLARMRSLEILDLNG--CTGIVR--GLHVLCGLTTLQEL 731
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L N+ V A + L+ L L+LN C ITD
Sbjct: 732 CLANVN---VDDAFVRDLTCHERLRRLSLNSC-----------------------TRITD 765
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+ L + +LE LNL+ C GL L GL L+ L L V + LR L+ L
Sbjct: 766 --VSPLARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPKVYVDDAFLRDLTCHERL 823
Query: 353 ESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
++L S T I+D S LA + SL+ LNL+ GL L LT L L L +
Sbjct: 824 RRLSLNSCTRITDVS--PLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMSVD 881
Query: 412 DSGAAYLRNF---KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
D A+LR+ + LR L + +TD V + + SL +L+L+ +C + L +
Sbjct: 882 D---AFLRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLN-DCTGIVRGLHEL 935
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
GLT L L ++N + A LR L + LR L+L SC
Sbjct: 936 CGLTTLQELCLANVNVDDAFLRDLTCHERLRELSLNSC 973
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 154/566 (27%), Positives = 248/566 (43%), Gaps = 89/566 (15%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ LCL V+D ++ D+ + LS++ S + +TD S L ++ +L++LD N
Sbjct: 585 TLQKLCLANV-NVDDAFLRDLTCHERLRELSLN-SCTRITDVSPLARMR---SLENLDLN 639
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRR----------------------NNAITAQGMKAF 127
C I G L L GL+ L L R+ N+ +
Sbjct: 640 DCTGIVRG-LHVLCGLTTLQELCLRQLSVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 698
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL CT I GL L GL L+ L + N + D+ ++ L+ L+ L +
Sbjct: 699 ARMRSLEILDLNGCTGIVRGLHVLCGLTTLQELCLANVN-VDDAFVRDLTCHERLRRLSL 757
Query: 188 -SCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
SC+++TD S +A ++ L + ++ C+ I+R LT+LQ+L L + V A
Sbjct: 758 NSCTRITDVSPLARMRSLEMLNLND--CTGIVRGLHELCGLTTLQELYLPKVY---VDDA 812
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
L L+ L L+LN C D +++ SL++LNL L L GLT L+
Sbjct: 813 FLRDLTCHERLRRLSLNSCTRITD-VSPLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQ 871
Query: 306 SLNLDSCGIGDEGLVNLT-----------------------GLCNLKCLELSDTQVGSSG 342
L L + D L +LT + +L+ L+L+D G
Sbjct: 872 ELYLRQMSVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDLNDCTGIVRG 931
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT 401
L L GLT L+ + L+ + D LR L L+ L+L++ +ITD ++ L + L
Sbjct: 932 LHELCGLTTLQELCLANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLE 989
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKD 444
LDL G G L L+ L + + DA ++ I D
Sbjct: 990 KLDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNSCTRITD 1049
Query: 445 LSSLTLLNLSQNCNLTDKT-----LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
+S L + +N +L T L ++ GLT L L + + A LR L + LR
Sbjct: 1050 VSPLARMRSLENMDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDAFLRDLTCHERLRK 1109
Query: 500 LTLESC-KVT-ANDIKRLQSRDLPNL 523
L+L SC ++T + + R++S ++ +L
Sbjct: 1110 LSLNSCTRITDVSPLARMRSLEMLDL 1135
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 207/441 (46%), Gaps = 50/441 (11%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+ + D L L L LS N+ + A + +L LDL CT I GL L
Sbjct: 381 VSVDDAFLRDLTCHERLRELSL--NSCTRITDVSPLARMRSLEMLDLNGCTGIVRGLHEL 438
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD-SGIAYLKGLSISSVI 209
GL L+ L ++ + + D+ ++ L+ L+ L + SC+++TD S +A ++ L + +
Sbjct: 439 CGLTTLQELYLRQMS-VDDALLRDLTCHERLRELSLNSCTRITDVSPLARMRSLEMLDLN 497
Query: 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
C+ I+R LT+LQ+L L + V A L L+ L L+LN C
Sbjct: 498 G--CTGIVRGLHELCGLTTLQELYLRQM---SVDDALLRDLTCHERLRELSLNSC----- 547
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
ITD + L + +LE LNL+ C GL L GL L+
Sbjct: 548 ------------------TRITD--VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQ 587
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L++ V + LR L+ L ++L S T I+D S LA + SL++L+L+
Sbjct: 588 KLCLANVNVDDAFLRDLTCHERLRELSLNSCTRITDVS--PLARMRSLENLDLNDCTGIV 645
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICG-GGLTDAGVKHIKD 444
GL L LT L L L + D A+LR+ + LR L + +TD V +
Sbjct: 646 RGLHVLCGLTTLQELCLRQLSVDD---AFLRDLTCHERLRRLSLNSCTRITD--VSPLAR 700
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ SL +L+L+ C + L ++ GLT L L ++N + A +R L + LR L+L S
Sbjct: 701 MRSLEILDLN-GCTGIVRGLHVLCGLTTLQELCLANVNVDDAFVRDLTCHERLRRLSLNS 759
Query: 505 C-KVT-ANDIKRLQSRDLPNL 523
C ++T + + R++S ++ NL
Sbjct: 760 CTRITDVSPLARMRSLEMLNL 780
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 150/525 (28%), Positives = 241/525 (45%), Gaps = 78/525 (14%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL V+D ++ D+ + LS++ S + +TD S L ++ +L+ L+ N
Sbjct: 727 TLQELCLANV-NVDDAFVRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLNLN 781
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
C I G L L GL+ L L RR N+ +
Sbjct: 782 DCTGIVRG-LHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 840
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L L+L CT I GL L GL L+ L ++ + + D+ ++ L+ L+ L +
Sbjct: 841 ARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMS-VDDAFLRDLTCHERLRRLSL 899
Query: 188 -SCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
SC+++TD S +A ++ L + + C+ I+R LT+LQ+L L N+ V A
Sbjct: 900 NSCTRITDVSPLARMRSLEMLDLND--CTGIVRGLHELCGLTTLQELCLANVN---VDDA 954
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
L L+ L L+LN C ITD + L + +LE
Sbjct: 955 FLRDLTCHERLRELSLNSC-----------------------TRITD--VSPLARMRSLE 989
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISD 364
L+L+ C GL L GL L+ L L V + LR L+ L ++L S T I+D
Sbjct: 990 KLDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNSCTRITD 1049
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF--- 421
S LA + SL++++L+ GL L LT L L L + D A+LR+
Sbjct: 1050 VS--PLARMRSLENMDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDD---AFLRDLTCH 1104
Query: 422 KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
+ LR L + +TD V + + SL +L+L+ C + L ++ GLT L L +
Sbjct: 1105 ERLRKLSLNSCTRITD--VSPLARMRSLEMLDLN-GCTGIVRGLHVLCGLTTLQELYLRQ 1161
Query: 481 SRITSAGLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSRDLPNL 523
+ A LR L + LR L+L SC ++T + + R++S ++ +L
Sbjct: 1162 MCVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDL 1206
>gi|334117577|ref|ZP_08491668.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333460686|gb|EGK89294.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 348
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 146/285 (51%), Gaps = 46/285 (16%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
D+KPL+ LTNL L + +++ D +K L+ SL
Sbjct: 91 DIKPLASLTNLTWLFLGSNQIGD-----IKPLA-----------------------SLTN 122
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
LT L+L P+ + L++L +L +L+L+ Q+ D + + + +L +L L N+I
Sbjct: 123 LTRLSLSENPI--GDIKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLTILFLSDNQIG 178
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
D + L LTNL L L IGD + L L NL L+LSD Q+G ++ L+ LTN
Sbjct: 179 D--IKPLASLTNLTFLFLSDNKIGD--IKPLASLTNLTFLDLSDNQIGD--IKPLASLTN 232
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L S++LS I G ++ LA L++L LNL QI D + L SLT LT L+L G I
Sbjct: 233 LSSLDLSDNRI--GDIKPLASLTNLTRLNLLDNQIGD--IKPLASLTNLTRLNLDGNVIG 288
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
D L + NLRSL++ + D +K + L+ LT+L+LS N
Sbjct: 289 D--IKPLASLTNLRSLDLSRNVIGD--IKPLASLTKLTVLHLSGN 329
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
T++C + L++L L+L IGD + L L NL L L Q+G ++ L+ LT
Sbjct: 66 TNDCDAADRKLSSLTKLDLFDNQIGD--IKPLASLTNLTWLFLGSNQIGD--IKPLASLT 121
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
NL ++LS I G ++ LA L++L L+L QI D + L SLT LT L L +I
Sbjct: 122 NLTRLSLSENPI--GDIKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLTILFLSDNQI 177
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS---LTLLNLSQNCNLTDKTLELI 467
D L + NL L L+D + IK L+S LT L+LS N + D ++ +
Sbjct: 178 GD--IKPLASLTNLTFL-----FLSDNKIGDIKPLASLTNLTFLDLSDN-QIGD--IKPL 227
Query: 468 SGLTGLVSLNVSNSRI 483
+ LT L SL++S++RI
Sbjct: 228 ASLTNLSSLDLSDNRI 243
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 139/296 (46%), Gaps = 46/296 (15%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+ D+ + +K ++L +L + F G ++ L L+NLT LS N +K
Sbjct: 83 DLFDNQIGDIKPLASLTNLTWLFLGSNQIGDIKPLASLTNLTRLSLSEN---PIGDIKPL 139
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A L NL LDL + ++K L L +L I + + D+KPL+ LTNL L +
Sbjct: 140 ASLTNLTFLDLS-----DNQIGDIKPLASLTNLTILFLSDNQIGDIKPLASLTNLTFLFL 194
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
S +K+ D +K L+ SL LT L+L + +
Sbjct: 195 SDNKIGD-----IKPLA-----------------------SLTNLTFLDLSDNQI--GDI 224
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
L++L +L L+L+ ++ D + + + +L LNL N+I D + L LTNL L
Sbjct: 225 KPLASLTNLSSLDLSDNRIGD--IKPLASLTNLTRLNLLDNQIGD--IKPLASLTNLTRL 280
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
NLD IGD + L L NL+ L+LS +G ++ L+ LT L ++LS I+
Sbjct: 281 NLDGNVIGD--IKPLASLTNLRSLDLSRNVIGD--IKPLASLTKLTVLHLSGNEIA 332
>gi|290982223|ref|XP_002673830.1| predicted protein [Naegleria gruberi]
gi|284087416|gb|EFC41086.1| predicted protein [Naegleria gruberi]
Length = 572
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 129/266 (48%), Gaps = 19/266 (7%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
F + ++K LNL N I +E ++L L+NL LNL + IG +GL L LK L L
Sbjct: 289 FPYLENMKSLNLQNNRIGNEGAINLCSLSNLTELNLSNNLIGGQGLKYFYKLSQLKILNL 348
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
S QVG G +LS LE+++L + I + LR L LK L L+ +I + GL
Sbjct: 349 SSNQVGDVGANYLSENVKLENLSLKESLIGEEGLRNFGNLKLLKYLMLNNNKIGN-GLKY 407
Query: 394 LTSLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
L++ L +L + I D L F+NL L+I ++ I ++ L L
Sbjct: 408 LSNCNELEYLHVGSNDIGDESVIELFRSEFRNLIHLDISHNYVSYKCCDVISKMNQLKEL 467
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL------------RHLKPLKNLRS 499
N+S N ++ D L L+S L+ ++ L +N ++ +G+ H+K K L +
Sbjct: 468 NISNNPSIGDTGLSLLSPLS-IIKLEANNCGVSDSGIIDYLNFEPKISTLHIKSNK-LSN 525
Query: 500 LTLESCKVTAND--IKRLQSRDLPNL 523
+TL++ A + I L+ D PN
Sbjct: 526 MTLQALISYAQNRSISELKISDSPNF 551
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 153/323 (47%), Gaps = 40/323 (12%)
Query: 151 LKGLMKLESLNIKWC----NCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLSI 205
+ + KLES+ +C N + + +MK +S L NLK IS ++ + + L L
Sbjct: 214 FEHIRKLESITDLFCLTFRNNLFEEEMKFISPLGNLKKFHFISKGRIKEEAVKDLSTLKK 273
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
+ + ++I C +L +++ L NL+ + +L +L +L LNL+
Sbjct: 274 LEELHLDNNLITA--CNFPYLENMKSL---NLQNNRIGNEGAINLCSLSNLTELNLSNNL 328
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ G + F K+ LK+LNL N++ D +L LE+L+L IG+EGL N L
Sbjct: 329 IGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLSENVKLENLSLKESLIGEEGLRNFGNL 388
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL--------------- 370
LK L L++ ++G +GL++LS LE +++ I D S+ +L
Sbjct: 389 KLLKYLMLNNNKIG-NGLKYLSNCNELEYLHVGSNDIGDESVIELFRSEFRNLIHLDISH 447
Query: 371 -----------AGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
+ ++ LK LN+ + I DTGL+ L+ L+ + L+ ++DSG
Sbjct: 448 NYVSYKCCDVISKMNQLKELNISNNPSIGDTGLSLLSPLS-IIKLEANNCGVSDSGIIDY 506
Query: 419 RNFK-NLRSLEICGGGLTDAGVK 440
NF+ + +L I L++ ++
Sbjct: 507 LNFEPKISTLHIKSNKLSNMTLQ 529
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 140/321 (43%), Gaps = 41/321 (12%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NL+ F +I + ++ L L L L NN ITA F L N+ L+L+
Sbjct: 248 NLKKFHFISKGRIKEEAVKDLSTLKKLEELHLD-NNLITACN---FPYLENMKSLNLQNN 303
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+ G +NL L L LN+ N I +K L+ LK L +S ++V D G Y
Sbjct: 304 RIGNEGAINLCSLSNLTELNLS-NNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANY-- 360
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
L+ KL L+L+ + L + L L YL L
Sbjct: 361 ------------------------LSENVKLENLSLKESLIGEEGLRNFGNLKLLKYLML 396
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGL 319
N ++ +G + S L+ L++G N+I DE ++ L NL L++ + +
Sbjct: 397 NNNKIG-NGLKYLSNCNELEYLHVGSNDIGDESVIELFRSEFRNLIHLDISHNYVSYKCC 455
Query: 320 VNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLT--NLESINLSFTGISD-GSLRKLAGLSS 375
++ + LK L +S+ +G +GL LS L+ LE+ N G+SD G + L
Sbjct: 456 DVISKMNQLKELNISNNPSIGDTGLSLLSPLSIIKLEANN---CGVSDSGIIDYLNFEPK 512
Query: 376 LKSLNLDARQITDTGLAALTS 396
+ +L++ + ++++ L AL S
Sbjct: 513 ISTLHIKSNKLSNMTLQALIS 533
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESIN-LSF-TGISDGSLRKLAGLSSLKSLNLDAR- 384
LK + +T + S H+ L ++ + L+F + + ++ ++ L +LK + ++
Sbjct: 199 LKNFGICNTFIEKSIFEHIRKLESITDLFCLTFRNNLFEEEMKFISPLGNLKKFHFISKG 258
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+I + + L++L L L L IT YL N++SL + + + G ++
Sbjct: 259 RIKEEAVKDLSTLKKLEELHLDNNLITACNFPYLE---NMKSLNLQNNRIGNEGAINLCS 315
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
LS+LT LNLS N + + L+ L+ L LN+S++++ G +L L +L+L+
Sbjct: 316 LSNLTELNLSNNL-IGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLSENVKLENLSLKE 374
>gi|71748370|ref|XP_823240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832908|gb|EAN78412.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 846
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 119/445 (26%), Positives = 203/445 (45%), Gaps = 53/445 (11%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT--------LL 235
L ++ + VT+ GI+ L K +S+ V C +I L L L +LQ++ +
Sbjct: 538 LDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITHLEFLRP-LPNLQQVVADQMNLTDIG 596
Query: 236 NLEGCP-VTAACLDSLSALGS--------LFYLNLNRCQLSDDGCEK-FSKIGSLKVLNL 285
L G P + L+ LG+ L L+L + +S+ G + SL+ L++
Sbjct: 597 GLTGAPSLRRVTLNESKRLGTVGEVRLPYLQELSLRKSTISNAGIRSLLASCRSLQHLDM 656
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
E L L L NL L L + + E + ++ NL+ L++++ + +
Sbjct: 657 QHCHSVTE-LSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTEC-ADITDVNC 714
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLD 404
LS L +LE I+LS T ++ ++ L+ +L+ LNL + R +T+ L L L L
Sbjct: 715 LSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTNVN--CLGKLPFLRELH 772
Query: 405 LFGARITDSGAAYLRNFKNLRSLEI 429
L +TD G A L N L +L +
Sbjct: 773 LEKTNVTDKGIAGLSNCIQLETLAL 797
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 123/518 (23%), Positives = 220/518 (42%), Gaps = 98/518 (18%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ----------------------ISDGGLEHLRGLS 106
+TD GL + C +LQ + + C++ I + G++ LR L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNCMKLRSLNCLGSLRNLRTLIVSRNRIPEEGVQGLRKLR 322
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
+L L F N TA ++ + L +LV+LDL G + +L+ L + C
Sbjct: 323 DLEVLRFSVFNRPTA--VEFISSLGSLVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCR 380
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL---FCLH 223
+ SD++ L+ LT L++L +S + V + L+ C ++ L +C
Sbjct: 381 RV--SDVRWLAALTCLRTLDLSHTNVRSRWLESLRA----------CRYLVELNVAYCRD 428
Query: 224 V----FLTSLQKLTLLNLEGCPVTAACLDS-----------------------LSALGSL 256
V FL+ L+ L L+L G + LD L L L
Sbjct: 429 VVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKDLHFLETLREL 488
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD-ECLVHLKGLTNLESLNLDSCGI 314
L+ R + D + L+ L+ + + +TD +C L+GL NL++L+L +
Sbjct: 489 VKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTDVKC---LEGLRNLKTLDLAGTNV 545
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-------GSL 367
+EG+ +L +L+ +++S+ + + L L L NL+ + ++D SL
Sbjct: 546 TNEGISSLPKCVSLEYVDVSECCL-ITHLEFLRPLPNLQQVVADQMNLTDIGGLTGAPSL 604
Query: 368 RKL-------------AGLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-ITD 412
R++ L L+ L+L I++ G+ + L S L HLD+ +T+
Sbjct: 605 RRVTLNESKRLGTVGEVRLPYLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTE 664
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
A L NLR L + +T + HI +L L +++ ++TD + +S L
Sbjct: 665 LSA--LSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSALQS 720
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
L +++S + +T+ G++ L LR L L C+ N
Sbjct: 721 LEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTN 758
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 182/405 (44%), Gaps = 17/405 (4%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+A+T + M + +L L + C + L ++ ++ + N + S +
Sbjct: 139 KSAVTNEMMHIVSMARDLESLTVRNCFSESEASLCSVTSILNSRATNRRDARTFYLSGVT 198
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
L L L+SL + + +++ ++Y + ++ V+ C ++ L C +LQ+LT
Sbjct: 199 SLGVLRCLRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLVSLECF----AALQRLT 254
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L++ C +T L +S SL Y+ L+ C +L C + +L+ L + N I +
Sbjct: 255 HLSVLNCTITDEGLPPISKCFSLQYVMLDNCMKLRSLNC--LGSLRNLRTLIVSRNRIPE 312
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E + L+ L +LE L S + ++ L +L L+L D VG +G L
Sbjct: 313 EGVQGLRKLRDLEVLRF-SVFNRPTAVEFISSLGSLVELDLRDNWVGDAGCASFVHCRQL 371
Query: 353 ESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
+ + LS +SD +R LA L+ L++L+L + L +L + L L++ R
Sbjct: 372 QQLKLSCCRRVSD--VRWLAALTCLRTLDLSHTNVRSRWLESLRACRYLVELNVAYCRDV 429
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
++L + L+ L++ G + + + I LT L L ++C+ + K L + L
Sbjct: 430 -VEVSFLSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFL-LLKDCS-SVKDLHFLETLR 486
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
LV L+ + I A + + K L L+ C + D+K L+
Sbjct: 487 ELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLT-DVKCLE 530
>gi|291001373|ref|XP_002683253.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
gi|284096882|gb|EFC50509.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
Length = 461
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 163/367 (44%), Gaps = 63/367 (17%)
Query: 67 SDVTDSGLIH---LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
D+ +G+I + +NLQ L+ N C +I + G++ + L NL LS N + A+G
Sbjct: 144 KDIPKAGIIFCQAISQLTNLQKLNVNNC-KIGNLGVQFITQLGNLMELSVI-NTGMDAKG 201
Query: 124 MKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ A L NL KL + L N+K +L SL++ + + K +S + NL
Sbjct: 202 LNLIATRLKNLTKLQFNGTVQHVTSLSNMK---QLTSLSMGFDVDVDVKGAKAISEMNNL 258
Query: 183 KSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV 242
+L ++ + D G+ + C M +LT L + G +
Sbjct: 259 TNLSLNTN---DEGLEEI------------CKMT--------------QLTSLKVCGFYL 289
Query: 243 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
T L L L L LNLN + ++G + S+ L
Sbjct: 290 TTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISE------------------------L 325
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
L SL ++ GI +G +T L L L +S+ + + G+++L+ L L ++N FT
Sbjct: 326 DQLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLNARFTK 385
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
I + ++ L+ +++LK LN+ + D G+ ++ + LT LD+ I++ G A L+
Sbjct: 386 IDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKEM 445
Query: 422 KNLRSLE 428
K L+ L+
Sbjct: 446 KQLKVLK 452
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 132/266 (49%), Gaps = 23/266 (8%)
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKG--------------LTNLESLNLDSCGIGDEGLV 320
+++ SL++ N+ EI+ E H+K LTNL+ LN+++C IG+ G+
Sbjct: 121 TQLTSLEIPNVDLGEIS-ESYFHVKDIPKAGIIFCQAISQLTNLQKLNVNNCKIGNLGVQ 179
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+T L NL L + +T + + GL ++ L NL + + T SL + L+SL S+
Sbjct: 180 FITQLGNLMELSVINTGMDAKGLNLIATRLKNLTKLQFNGTVQHVTSLSNMKQLTSL-SM 238
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
D + G A++ + LT+L L D G + L SL++CG LT G+
Sbjct: 239 GFDV-DVDVKGAKAISEMNNLTNLSL---NTNDEGLEEICKMTQLTSLKVCGFYLTTLGL 294
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
K + L L LNL+ + + ++ +LIS L L SL +++ I G + + LK L S
Sbjct: 295 KFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTS 354
Query: 500 LTLESCKVTANDIKRLQSRDLPNLVS 525
LT+ + + +K L +LP L +
Sbjct: 355 LTISNNPIFNEGVKYLT--ELPQLTN 378
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 138/286 (48%), Gaps = 11/286 (3%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+ +S LTNL+ L ++ K+ + G+ ++ L ++ + I M + L++ T L+ L
Sbjct: 155 QAISQLTNLQKLNVNNCKIGNLGVQFITQLGNLMELSVINTGMDAK--GLNLIATRLKNL 212
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
T L G T + SLS + L L++ + G + S++ +L L+L N
Sbjct: 213 TKLQFNG---TVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLNTN--- 266
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLT 350
DE L + +T L SL + + GL L L L+ L L+D + G+ G + +S L
Sbjct: 267 DEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELD 326
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L S+ ++ GI + + L L SL + I + G+ LT L LT+L+ +I
Sbjct: 327 QLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLNARFTKI 386
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ G YL NL+ L I + D GV+ I + +LT L++ QN
Sbjct: 387 DNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQN 432
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 156/345 (45%), Gaps = 26/345 (7%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
+T L SL+I + + +Y I I C I +L T+LQKL N+
Sbjct: 120 MTQLTSLEIPNVDLGEISESYFHVKDIPKAGIIFCQAISQL-------TNLQKL---NVN 169
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL-NLGFNEITDECLVH 297
C + + ++ LG+L L++ + G + LK L L FN + H
Sbjct: 170 NCKIGNLGVQFITQLGNLMELSVINTGMDAKGLNLIA--TRLKNLTKLQFNG----TVQH 223
Query: 298 LKGLTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
+ L+N++ L S G + +G ++ + NL L L+ GL + +T L
Sbjct: 224 VTSLSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLN---TNDEGLEEICKMTQLT 280
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITD 412
S+ + ++ L+ L L L+ LNL D + G ++ L LT L++ I
Sbjct: 281 SLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDK 340
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
GA ++ N K L SL I + + GVK++ +L LT LN ++ + ++ ++ +S +
Sbjct: 341 KGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLN-ARFTKIDNEGVKYLSEMAN 399
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L LN+ + + G+ + +KNL L +E +++ + +L+
Sbjct: 400 LKILNIKRNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKE 444
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 135/299 (45%), Gaps = 33/299 (11%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K +++IA++ +L + +G T + L + L SL F + + G + +
Sbjct: 196 GMDAKGLNLIATRLKNLTKLQFNG---TVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAI 252
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
++NLT+LS N+ +G++ + L L + GL L L KL LN+
Sbjct: 253 SEMNNLTNLSLNTND----EGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNL 308
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
+ K +S L L SL+I+ D GI KG
Sbjct: 309 NDHEDFGNEGAKLISELDQLTSLEIN-----DIGIDK-KGAK------------------ 344
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
F+T+L++LT L + P+ + L+ L L LN ++ ++G + S++ +LK+
Sbjct: 345 --FITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLNARFTKIDNEGVKYLSEMANLKI 402
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
LN+ N + D + + G+ NL L+++ I +EG+ L + LK L+ +D +
Sbjct: 403 LNIKRNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKEMKQLKVLKKADQRASKE 461
>gi|48096980|ref|XP_393659.1| PREDICTED: f-box/LRR-repeat protein 14 [Apis mellifera]
gi|380017700|ref|XP_003692785.1| PREDICTED: F-box/LRR-repeat protein 14-like [Apis florea]
Length = 481
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 140/304 (46%), Gaps = 74/304 (24%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 242 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 284
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 285 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 344
Query: 185 LQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L + SC V+D G+AYL G ISS+ C I +H+
Sbjct: 345 LNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHIS---------------- 388
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
L +L L+L+ CQ+SD+G K +K L
Sbjct: 389 ---------QGLFNLKLLSLSACQISDEGICKIAKT-----------------------L 416
Query: 302 TNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
+LE+LN+ C + D+GL + + +LKC++L T++ ++GL + L L ++NL
Sbjct: 417 HDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLG 476
Query: 359 FTGI 362
+
Sbjct: 477 LWHV 480
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 160/347 (46%), Gaps = 64/347 (18%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L G+ NL++L +S C +TD+G+ ++ F LT
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGL------------------------INAFCQEYTTLTE 208
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LNL C + +LG + N L GC + G +L + +N
Sbjct: 209 LNLSLCKQVSDI-----SLGRIVQYLKNLEHLELGGCCNITNGG---LLCIAWN------ 254
Query: 295 LVHLKGLTNLESLNLDSCG-IGDEGLVNLTGL--------CNLKCLELSDTQ-VGSSGLR 344
L L+ L+L SC + D G+ +L G+ L+ L L D Q + LR
Sbjct: 255 ------LKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLALEHLSLQDCQRLSDEALR 308
Query: 345 HLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGL 400
H+S GLT L+SINLSF I+D L+ LA +SSL+ LNL + ++D G+A L + +
Sbjct: 309 HVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLAEGGSRI 368
Query: 401 THLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNC 457
+ LD+ F +I D ++ + NL+ L + ++D G+ K K L L LN+ Q
Sbjct: 369 SSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCS 428
Query: 458 NLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
LTDK L I+ + L +++ +RI++ GL + L L +L L
Sbjct: 429 RLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 475
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 164/352 (46%), Gaps = 56/352 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL--KGLMKLES 159
RG+ + LS RR G+ NL L+L C I GL+N + L
Sbjct: 155 RGVKRVQVLSLRRGLG------DVLKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTE 208
Query: 160 LNIKWCNCITDSDM-KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ++D + + + L NL+ L++ C +T+ G
Sbjct: 209 LNLSLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNGG--------------------- 247
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALG--SLFYLNLNRCQLSD 268
L C+ +L+KL L+L C + A ++ +A G +L +L+L CQ
Sbjct: 248 -LLCI---AWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLALEHLSLQDCQRLS 303
Query: 269 DGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT- 323
D + IG +LK +NL F ITD L HL +++L LNL SC + D G+ L
Sbjct: 304 DEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLAE 363
Query: 324 GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 380
G + L++S ++G L H+S GL NL+ ++LS ISD + K+A L L++LN
Sbjct: 364 GGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLN 423
Query: 381 L-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
+ ++TD GL + S+ L +DL+G RI+ +G + L +L +
Sbjct: 424 IGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 475
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 36/244 (14%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSG 348
LKG+ NLE+LNL C I D GL+N T L L C ++SD +G R +
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLG----RIVQY 228
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT------- 398
L NLE + L I++G L +A L LK L+L + Q++D G+A L +
Sbjct: 229 LKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGN 288
Query: 399 -GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLL 451
L HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL L
Sbjct: 289 LALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLREL 345
Query: 452 NLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
NL N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+++
Sbjct: 346 NLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQIS 405
Query: 509 ANDI 512
I
Sbjct: 406 DEGI 409
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 117/272 (43%), Gaps = 63/272 (23%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + + G +L LS D ++D L H+ +
Sbjct: 263 LRSCWQVSDLGIAHLAGVNRE------AAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 316
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC 141
L+S++ +FC+ I+D GL+HL +S+L L+ R + ++ GM A G + LD+ C
Sbjct: 317 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLAEGGSRISSLDVSFC 376
Query: 142 TRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIA 198
+I LV++ +GL L+ L++ C + K L +L++L I CS++TD G
Sbjct: 377 DKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKG-- 434
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L+ S++ L ++L GC
Sbjct: 435 -----------------------LYTIAESMKHLKCIDLYGCT----------------- 454
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
++S +G E+ K+ L LNLG +
Sbjct: 455 ------RISTNGLERIMKLPQLSTLNLGLWHV 480
>gi|290979200|ref|XP_002672322.1| predicted protein [Naegleria gruberi]
gi|284085898|gb|EFC39578.1| predicted protein [Naegleria gruberi]
Length = 318
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 4/231 (1%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
++ LNL +EIT + L NL+ L+L S I EG L+ L NL L L+D +
Sbjct: 1 MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
GLR+ S LTNL + L I L+ +++K L L I D GL +L
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCN 458
L HL+L + G YL K L+ L+I LTD + D S+ L+LS+N
Sbjct: 121 LIHLNLNFNNV-QRGLIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDLSENKK 179
Query: 459 LTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L+ K+ + I L LN+ SN ++ L HL L NL +L +C +T
Sbjct: 180 LSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASL-NLLTLRANNCGIT 229
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 16/238 (6%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LNL +T++ + L +L L+L+ ++ +G S + +L L L N IT E
Sbjct: 4 LNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSITGEG 63
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L + LTNL L LD+ IG G L+ N+K L LS+ + GL + L +L
Sbjct: 64 LRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKSLIH 123
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARITDS 413
+NL+F + G L L+ LK L++ +TD L + LDL +++
Sbjct: 124 LNLNFNNVQRG-LIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDL-----SEN 177
Query: 414 GAAYLRNFKNL---RSLEICGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
++FKN+ R L I G L D + H+ L+ LTL + NC +TDK L
Sbjct: 178 KKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASLNLLTL--RANNCGITDKGL 233
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 8/200 (4%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
++ L LS++++ SSG+ L NL+ ++LS I+ L+ L +L SL L+ IT
Sbjct: 1 MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
GL ++LT LT L L I GA YL + N++ L + + D G+++ +L S
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L LNL N N + L +S L L++ ++ +T L + L++E +
Sbjct: 121 LIHLNL--NFNNVQRGLIYLSECKLLKQLDIQHNNLTDQELIDFFD----KELSIEELDL 174
Query: 508 TANDIKRLQSRDLPNLVSFR 527
+ N K+L + N+ R
Sbjct: 175 SEN--KKLSGKSFKNICKQR 192
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 126/265 (47%), Gaps = 38/265 (14%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++LS S++T SG+ NLQ LD + + I+ G +L L NLTSL+ +N+IT
Sbjct: 3 SLNLSNSEITSSGISQFGILKNLQELDLSSNL-INSEGANYLSSLYNLTSLAL-NDNSIT 60
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCITDSDMKPL 176
+G++ F+ L NL +L L+ G L + NIK+ N I D ++
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSS-----NTNIKFLTLSNNSIADEGLENF 115
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
L +L L ++ + V G+ YL C ++ +L H LT + + +
Sbjct: 116 GNLKSLIHLNLNFNNV-QRGLIYLSE----------CKLLKQLDIQHNNLTDQELIDFFD 164
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECL 295
E ++ LD L+ N+ +LS + K L +LN+G N ++ D L
Sbjct: 165 KE---LSIEELD----------LSENK-KLSGKSFKNICKQRKLSILNIGSNPKLGDLSL 210
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLV 320
HL L NL +L ++CGI D+GLV
Sbjct: 211 SHLASL-NLLTLRANNCGITDKGLV 234
>gi|261334051|emb|CBH17045.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense DAL972]
Length = 1399
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 130/519 (25%), Positives = 203/519 (39%), Gaps = 100/519 (19%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + +TD + H C L +LD +FC ++ D + LSN+T+L
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------ 165
L+L+ C++I GL L L +L LN+K
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVK 682
Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
NC SD+ LS L+ LK L + SGI L G + + L I
Sbjct: 683 LILDNCKGLSDVTFLSSLSTLKELNLHHCDAVTSGIGTL-GRLLQLRVLDLGWTKIDNNS 741
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L L LNL C + + ++++L +L LN++ C G F + L+
Sbjct: 742 LEDICACSSPLVSLNLSHCKEITS-ISAIASLNALEKLNIDNCCHVTSGWNVFGTLHQLR 800
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-- 339
V L I DE + H+ +L +LNL C + ++T L N+ L +
Sbjct: 801 VAVLSNTRINDENIRHISECKSLNTLNLAFCN----DITDITALSNITMLRELNIDWCFN 856
Query: 340 -SSGLRHLSGLTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLD------------- 382
G+ L L L ++ G S +++ SL LNL+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 383 ---------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
R L ++SL L L+L R+ D + K+L+SL +
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSLNV---- 972
Query: 434 LTDAGVKHIKDLSSL----TLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ +I D+S+L TL L+ N C+ K E LT L +S + +T+ G+
Sbjct: 973 ---SNCNYITDISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGI 1029
Query: 489 RHLKPLKNLRSLTLESCKVTA-----NDIKRLQSRDLPN 522
R L KNLR+L L C+ + N+IK L+ + N
Sbjct: 1030 RLLSGCKNLRNLELYCCRDVSNIEPINNIKSLEELTIQN 1068
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 130/512 (25%), Positives = 214/512 (41%), Gaps = 99/512 (19%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+ P+S L L+ L + +V D +L+G+S S
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCD---IWLEGISQSK-------- 965
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
SLQ L N+ C + +LS+L +L LN+N C G E F
Sbjct: 966 ------------SLQSL---NVSNCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTN-----------------------LESLNLDSC 312
+ L+V L +T+E + L G N LE L + +C
Sbjct: 1010 ALTRLRVATLSVTWVTNEGIRLLSGCKNLRNLELYCCRDVSNIEPINNIKSLEELTIQNC 1069
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLA 371
+EGL+ + L L+ L L Q L L +L + L+ G + ++ ++
Sbjct: 1070 HNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSL--VKLTIEGPEELCDIKLIS 1127
Query: 372 GLSSLKSLNLDA--RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
+++LK L + R + D G L L L L L + ++ + ++L+SL+I
Sbjct: 1128 NIATLKELKIAHGDRLLNDVG--DLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDI 1185
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGL 488
+ HI +L++L LNLS C E ++ L L LN+S++R+ TS G
Sbjct: 1186 -THSFELPDIYHISNLTALEELNLS-GCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 489 RHLKPLKNLRSLTLESCKVTA----NDIKRLQ 516
++ K+L +L LESC +T DIK L+
Sbjct: 1244 YYISRCKSLITLNLESCDMTDASCLADIKTLE 1275
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 127/481 (26%), Positives = 210/481 (43%), Gaps = 42/481 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D W++ I SQ SL S+++S + +TD + L S L+ L+ N C +I G E
Sbjct: 953 VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+ L + +T +G++ +G NL L+L C R + + + LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLEL-YCCRDVSNIEPINNIKSLEELTI 1066
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
+ C+ I + +K + L L++ + S L L S + L C
Sbjct: 1067 QNCHNINEGLLK----VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD 1122
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
++++ L L + + L L L L L+ + + E KI SLK
Sbjct: 1123 IKLISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKS 1182
Query: 283 LNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L++ + E+ D + H+ LT LE LNL C G LT L L+ L LS T+V +S
Sbjct: 1183 LDITHSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTS 1240
Query: 342 -GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G ++S +L ++NL ++D S LA + +L+ L++ + G +AL +L L
Sbjct: 1241 YGGYYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGKCEELTRGFSALFTLPQL 1298
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
L+L + ITD ++LR +++ I+DL NLS L
Sbjct: 1299 RILNLMDSLITD---------EDLREIQLS---------HTIEDL------NLSYCKELN 1334
Query: 461 DKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519
D T + I + + S R G R L L L + +++ V+ + K L+ R
Sbjct: 1335 DITPVRRIKSIKKMDLHRSSEGRGLREGFRSLLELPCLSWVDIKNANVSFDVYKELKERK 1394
Query: 520 L 520
+
Sbjct: 1395 V 1395
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 120/448 (26%), Positives = 189/448 (42%), Gaps = 71/448 (15%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC L+ L+ ++CIQ+++ + LSN T++
Sbjct: 307 SGVSVEDNFLKDLCDCGPLERLNLSYCIQLTN-----INPLSNATAIE------------ 349
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+L+L C RI G+ + L KL L+ +K
Sbjct: 350 ----------ELNLNGCRRITRGIGVVWALPKLRVLH--------------------MKG 379
Query: 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
+ +S + G G S+ V C+ F L+S+ L LN++ C A
Sbjct: 380 VHLSEPSLDSVG----TGGSLVKVSLDNCAG----FGDMTLLSSIVTLEELNIQKC---A 428
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTN 303
+ + LG+L YL + + + F+ IG+ K +L L IT L +++ L N
Sbjct: 429 DIISGVCCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLTLESITG--LSNVEALAN 486
Query: 304 ---LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LE L+L C D G+ L L LK L+LS T S LR L + S+NLS
Sbjct: 487 ILTLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSGTNTDSDSLRGLCVSQTIVSLNLSHC 546
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
S+ ++ L +L LNL + G AL L L L ITD ++
Sbjct: 547 W-KVTSVFHISALETLNELNLSDCIRINAGWEALEKLQQLHVAILSNTHITDRDISHFSK 605
Query: 421 FKNLRSLEICGGGLTDA--GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
K L +L++ D + + ++++L LNL NC+ K L ++ L L LNV
Sbjct: 606 CKELVTLDL---SFCDELFDITSLSNITTLEDLNL-DNCSKIRKGLSVLGELPRLRVLNV 661
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCK 506
+T++ + L K+ L L++CK
Sbjct: 662 KGVHLTNSVIGSLGNGKSFVKLILDNCK 689
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 111/436 (25%), Positives = 195/436 (44%), Gaps = 54/436 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
L +L +L++ W +T+ ++ LSG NL++L++ C + S I + +
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCRDV-SNIEPINNIK------ 1059
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
SL++LT+ N C L + L L L L + Q +
Sbjct: 1060 -----------------SLEELTIQN---CHNINEGLLKVGMLPRLRVLVLRKLQSTYFS 1099
Query: 271 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L 325
+ SL L + G E+ D +K ++N+ +L GD L+N G L
Sbjct: 1100 LSSLGESKSLVKLTIEGPEELCD-----IKLISNIATLKELKIAHGDR-LLNDVGDLGKL 1153
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L LS +G++ + + +L+S++++ + + ++ L++L+ LNL
Sbjct: 1154 PWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHS-FELPDIYHISNLTALEELNLSGCY 1212
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+G ALT+L L L+L R+T S G Y+ K+L +L + +TDA + D
Sbjct: 1213 HIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTDASC--LAD 1270
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ +L L++ + C + + L L LN+ +S IT LR ++ + L L
Sbjct: 1271 IKTLEELHIGK-CEELTRGFSALFTLPQLRILNLMDSLITDEDLREIQLSHTIEDLNLSY 1329
Query: 505 CKVTANDI---KRLQS 517
CK NDI +R++S
Sbjct: 1330 CK-ELNDITPVRRIKS 1344
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 113/464 (24%), Positives = 193/464 (41%), Gaps = 87/464 (18%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +DL+ +++ DS + + C+ L L + C I D + L+ L L+
Sbjct: 225 SRLTNLKCLDLNSTNIDDSCIGEISACAKLSKLSVSECNNIIDA--TPISQLAALEELNL 282
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N IT +G+ L+ L LDL + L +L LE LN+ +C I +++
Sbjct: 283 NSNCHIT-KGIGTLGMLLRLRMLDLSGVSVEDNFLKDLCDCGPLERLNLSYC--IQLTNI 339
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
PLS T ++ L ++ C ++T +G+ + + +L KL
Sbjct: 340 NPLSNATAIEELNLNGCRRIT-------RGIGV--------------------VWALPKL 372
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+L+++G ++ LDS+ GSL ++L+ C GF ++T
Sbjct: 373 RVLHMKGVHLSEPSLDSVGTGGSLVKVSLDNCA--------------------GFGDMT- 411
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
L + LE LN+ C G+ L L L+ L + + + S
Sbjct: 412 ----LLSSIVTLEELNIQKCADIISGVCCLGTLPYLRVLNIKEAHISS------------ 455
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT 411
L FTGI G+ + L L L IT + + AL ++ L L L G
Sbjct: 456 ----LDFTGI--GASKSL--------LQLTLESITGLSNVEALANILTLEKLSLLGCNGI 501
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
D+G L N L+ L++ G ++ + ++ LNLS +T ++ IS L
Sbjct: 502 DAGIGCLGNLPQLKVLDLSGTNTDSDSLRGLCVSQTIVSLNLSHCWKVT--SVFHISALE 559
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L LN+S+ +AG L+ L+ L L + +T DI
Sbjct: 560 TLNELNLSDCIRINAGWEALEKLQQLHVAILSNTHITDRDISHF 603
>gi|124004058|ref|ZP_01688905.1| Rab family protein [Microscilla marina ATCC 23134]
gi|123990637|gb|EAY30117.1| Rab family protein [Microscilla marina ATCC 23134]
Length = 1165
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 136/477 (28%), Positives = 216/477 (45%), Gaps = 78/477 (16%)
Query: 89 NFCIQISD---GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
N IQ+ D G LEHLR ++ N + + L L +DL RI
Sbjct: 76 NSLIQVPDCMPGSLEHLR-------IAGHWPNQWKIEDIGLLQNLPELRAIDLSD-NRI- 126
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----------- 194
L L+ L L+ L++ N + +D+ PL L L+S+ +S +KV D
Sbjct: 127 SDLKPLQNLANLQMLDMS-DNRV--ADLTPLQNLPGLQSIVLSKNKVRDLTPLQHLTGLH 183
Query: 195 -SGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQKLT-LLNLEGCPVTAACLDSLS 251
+ Y K ++ + + C ++ L + L LQKL LL L+ L L
Sbjct: 184 TLLLHYNKIGDLAPLQHLTCLTMLSLHHNKISDLAPLQKLRGLLKLDLSNNQLDDLHPLK 243
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
+L SL L L Q+SD + SL+++ L N +TD L L+ L NL+SL+L +
Sbjct: 244 SLNSLQSLVLRNNQISD--LTPLQALHSLQLIVLRDNPVTD--LTPLQSLRNLQSLDLRN 299
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGS--------------------SGLRHLSGLTN 351
I D L L L +L+ ++L + + L L L N
Sbjct: 300 NQISD--LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPN 357
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
LESI+LS ISD L L LS+L+S++L Q+ LA+L L L +DL +I
Sbjct: 358 LESIDLSDNQISD--LTPLQNLSNLQSIDLSNNQVN--HLASLQYLPNLESIDLSDNQIN 413
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT---LELIS 468
D A L+N +L+S+++ I DL+ L L ++ +L+D L +
Sbjct: 414 D--LAPLQNLGDLQSIDLSNN--------QIHDLTPLQNLPNLESIDLSDNQISDLTPLQ 463
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 525
L L S+N+ N++++ L L+ L +L+++ L +++ D+ LQ LP+L S
Sbjct: 464 NLGSLQSINLRNNQVSD--LSPLQALHDLQAINLSDNQIS--DLAPLQK--LPHLKS 514
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 177/380 (46%), Gaps = 48/380 (12%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
G L L+ L+ LT LS N ++ GL+ KLDL L LK L
Sbjct: 193 GDLAPLQHLTCLTMLSLHHNKISDLAPLQKLRGLL---KLDLSNNQL--DDLHPLKSLNS 247
Query: 157 LESLNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSG 196
L+SL ++ N I+D +D+ PL L NL+SL + ++++D
Sbjct: 248 LQSLVLR-NNQISDLTPLQALHSLQLIVLRDNPVTDLTPLQSLRNLQSLDLRNNQISD-- 304
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
+ L+ LS L S+ +R ++ L L +++ L L L +L
Sbjct: 305 LTPLQNLSS------LQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNL 358
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
++L+ Q+SD + +L+ ++L N++ L L+ L NLES++L I D
Sbjct: 359 ESIDLSDNQISD--LTPLQNLSNLQSIDLSNNQVN--HLASLQYLPNLESIDLSDNQIND 414
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
L L L +L+ ++LS+ Q+ L L L NLESI+LS ISD L L L SL
Sbjct: 415 --LAPLQNLGDLQSIDLSNNQI--HDLTPLQNLPNLESIDLSDNQISD--LTPLQNLGSL 468
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+S+NL Q++D L+ L +L L ++L +I+D A L+ +L+S+++ +
Sbjct: 469 QSINLRNNQVSD--LSPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSIDLRDNQIEV 524
Query: 437 AGVKHIKDLSSLTLLNLSQN 456
I + LT L+L N
Sbjct: 525 FPEHLITNCPQLTSLHLYHN 544
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 99/321 (30%)
Query: 57 SSLLSVDLSGSDVTDSGLI--------------HLKDCSNLQSLDFNFCIQISDGGLEHL 102
SSL S+DL + + D + H+ D + LQ+L I +SD + L
Sbjct: 312 SSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESIDLSDNQISDL 371
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L NL+ NL +DL H L +L+ L LES+++
Sbjct: 372 TPLQNLS----------------------NLQSIDLSNNQVNH--LASLQYLPNLESIDL 407
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
N I +D+ PL L +L+S+ +S +++ D
Sbjct: 408 S-DNQI--NDLAPLQNLGDLQSIDLSNNQIHD---------------------------- 436
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
LT LQ L NLE ++ + L+ L +L GSL+
Sbjct: 437 ---LTPLQNLP--NLESIDLSDNQISDLTPLQNL---------------------GSLQS 470
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
+NL N+++D L L+ L +L+++NL I D L L L +LK ++L D Q+
Sbjct: 471 INLRNNQVSD--LSPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSIDLRDNQIEVFP 526
Query: 343 LRHLSGLTNLESINLSFTGIS 363
++ L S++L I
Sbjct: 527 EHLITNCPQLTSLHLYHNPIQ 547
>gi|302802011|ref|XP_002982761.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
gi|300149351|gb|EFJ16006.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
Length = 516
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 148/525 (28%), Positives = 223/525 (42%), Gaps = 79/525 (15%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS-QGSSL 59
+LP +++ + ++L+ + LE F+ ++++L L V+ +WM I + +
Sbjct: 28 ILPAHLAESLLHQLLVKNLFSPPLLELFQ-LSVEELDLNGELSVDAEWMAYIGGFRHLRV 86
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-------CIQISDGGLEHLRGLSNLTSLS 112
L V+ S + +S + HL L F+F C +I++ GLEH+ L L L
Sbjct: 87 LKVE-SCKALNNSAIWHLSG-----KLHFSFERKLIDRCSKITNQGLEHILTLGKLKHLG 140
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
I QG+ A L NL LDL GGL +TDS
Sbjct: 141 LS-ETGIGEQGIGKLAVLRNLSHLDL-------GGLP------------------VTDSH 174
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+ L L L LQ+ S +T+ G L+G ++ + + + + S+ ++
Sbjct: 175 VSSLLVLQLLIDLQLWGSSITNEGANMLRGFPRLEILNLAWTKV-------SVVPSMPRV 227
Query: 233 TLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEI 290
+ LNL C V S+S GS L L L+ + D S + L VL L +
Sbjct: 228 SQLNLSHCVVL-----SVSEEGSALDQLRLSGATIQDPLRVLHSHSLPELSVLELSATNL 282
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRHLSG 348
L L L + L+L S +NL C NLK L+LSDT+VGS G+ L+G
Sbjct: 283 A--ALTFLGSLKRVVKLDLSSMPSVSSDTMNLLAKCARNLKHLDLSDTRVGSEGVAVLTG 340
Query: 349 -LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+ LE ++L T I+D L + L ++L TSLTG+ +
Sbjct: 341 HVPALEHLSLRGTSITDSVFGYLGLMPLLIDIDLSN-----------TSLTGMPVFEFTK 389
Query: 408 ARIT----DSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
T DS +L+ NLR L++ +D K + L LT L L LT
Sbjct: 390 VYYTCAPVDSSFWSVLHLQQLHNLRRLDLRRTRFSDKSCKRLACLVRLTHLLLCAEF-LT 448
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
D +L +S L L SL + +T AGLR LKP L L L C
Sbjct: 449 DASLHELSALPNLRSLAFQGTVLTDAGLRSLKPPPPLEELDLTDC 493
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 108/446 (24%), Positives = 183/446 (41%), Gaps = 79/446 (17%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKL--ESLNIKWCNCITDSDMK 174
++ A+ M G +L L +E C ++ + +L G + E I C+ IT+ ++
Sbjct: 69 SVDAEWMAYIGGFRHLRVLKVESCKALNNSAIWHLSGKLHFSFERKLIDRCSKITNQGLE 128
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+ L LK L +S + + + GI L L+ L+
Sbjct: 129 HILTLGKLKHLGLSETGIGEQGIGKL--------------------------AVLRNLSH 162
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L+L G PVT + + SL L L L L ++++G L++LNL + +++
Sbjct: 163 LDLGGLPVTDSHVSSLLVLQLLIDLQLWGSSITNEGANMLRGFPRLEILNLAWTKVSV-- 220
Query: 295 LVHLKGLTNLESLNLDSC---GIGDEG------------------LVNLTGLCNLKCLEL 333
+ + + LNL C + +EG +++ L L LEL
Sbjct: 221 ---VPSMPRVSQLNLSHCVVLSVSEEGSALDQLRLSGATIQDPLRVLHSHSLPELSVLEL 277
Query: 334 SDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLS-SLKSLNLDARQITDTGL 391
S T + + L L L + ++LS +S ++ LA + +LK L+L ++ G+
Sbjct: 278 SATNLAA--LTFLGSLKRVVKLDLSSMPSVSSDTMNLLAKCARNLKHLDLSDTRVGSEGV 335
Query: 392 AALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK------- 443
A LT + L HL L G ITDS YL L +++ LT V
Sbjct: 336 AVLTGHVPALEHLSLRGTSITDSVFGYLGLMPLLIDIDLSNTSLTGMPVFEFTKVYYTCA 395
Query: 444 --DLSSLTLLNLSQNCN----------LTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
D S ++L+L Q N +DK+ + ++ L L L + +T A L L
Sbjct: 396 PVDSSFWSVLHLQQLHNLRRLDLRRTRFSDKSCKRLACLVRLTHLLLCAEFLTDASLHEL 455
Query: 492 KPLKNLRSLTLESCKVTANDIKRLQS 517
L NLRSL + +T ++ L+
Sbjct: 456 SALPNLRSLAFQGTVLTDAGLRSLKP 481
>gi|343417958|emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]
Length = 389
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 183/382 (47%), Gaps = 57/382 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+L+ LD + C I+D + L LS+L L IT + + L +L LDL
Sbjct: 20 SSLRMLDLSHCTGITD--VSPLSVLSSLRMLDLSHCTGIT--DVSPLSELSSLRTLDLSH 75
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD----S 195
CT I + L L L +L++ C ITD + PLS L++L+ L +S C+ +TD S
Sbjct: 76 CTGI-TDVSPLSKLSSLRTLDLSHCTAITD--VSPLSKLSSLRMLDLSHCTGITDVSPLS 132
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS 255
++ L+ L +S C+ I + L+ L L L+L C + LS L S
Sbjct: 133 KLSSLRTLDLSH-----CTGITDV----SPLSELSSLRTLDLSHC-TGITDVSPLSELSS 182
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLV------------HLKGLT 302
L L+L+ C D SK+ SL L+L ITD L+ H G+T
Sbjct: 183 LRTLDLSHCTGITD-VSPLSKLSSLHELDLSHCTGITDVSLLYRFFGLDKLGLSHCTGIT 241
Query: 303 N---------LESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+ L +L+L C GI D L L GLC L +LS G + + LS L++
Sbjct: 242 DVSPLSKLSGLRTLDLSHCTGITDVSPLSKLGGLCEL---DLSHCT-GITDVSPLSKLSS 297
Query: 352 LESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR 409
L ++LS TGI+D S L+ LSSL++L+L R ITD ++ L++L+GL LDL G
Sbjct: 298 LRKLDLSHCTGITDVS--PLSVLSSLRTLDLSHCRGITD--VSPLSTLSGLEVLDLSGCT 353
Query: 410 ITDSGAAYLRNFKNLRSLEICG 431
SG L + LR L G
Sbjct: 354 GVRSGLESLCSLSFLRYLSFLG 375
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 199/432 (46%), Gaps = 75/432 (17%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD + C I+D + L LS+L L IT + + L +L LDL CT I
Sbjct: 2 LDLSHCTGITD--VSPLSVLSSLRMLDLSHCTGIT--DVSPLSVLSSLRMLDLSHCTGI- 56
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS 204
+ L L L +L++ C ITD + PLS L++L++L +S C+ +TD
Sbjct: 57 TDVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAITDVSP------- 107
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
L+ L L +L+L C + LS L SL L+L+ C
Sbjct: 108 ---------------------LSKLSSLRMLDLSHC-TGITDVSPLSKLSSLRTLDLSHC 145
Query: 265 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
D S++ SL+ L+L ITD + L L++L +L+L C G+ +++
Sbjct: 146 TGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC----TGITDVS 198
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTN---------LESINLSF-TGISDGSLRKLAGL 373
L L L D L H +G+T+ L+ + LS TGI+D S L+ L
Sbjct: 199 PLSKLSSLHELD-------LSHCTGITDVSLLYRFFGLDKLGLSHCTGITDVS--PLSKL 249
Query: 374 SSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG 431
S L++L+L ITD ++ L+ L GL LDL ITD + L +LR L++
Sbjct: 250 SGLRTLDLSHCTGITD--VSPLSKLGGLCELDLSHCTGITD--VSPLSKLSSLRKLDLSH 305
Query: 432 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490
G+TD V + LSSL L+LS +TD + +S L+GL L++S +GL
Sbjct: 306 CTGITD--VSPLSVLSSLRTLDLSHCRGITD--VSPLSTLSGLEVLDLSGCTGVRSGLES 361
Query: 491 LKPLKNLRSLTL 502
L L LR L+
Sbjct: 362 LCSLSFLRYLSF 373
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 29/237 (12%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L LD +
Sbjct: 159 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLHELDLSH 213
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D L L L L IT + + L L LDL CT G+ +
Sbjct: 214 CTGITDVSL--LYRFFGLDKLGLSHCTGIT--DVSPLSKLSGLRTLDLSHCT----GITD 265
Query: 151 LKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYLKGLS 204
+ L KL L + +C +D+ PLS L++L+ L +S C+ +TD S ++ L+ L
Sbjct: 266 VSPLSKLGGLCELDLSHCTGITDVSPLSKLSSLRKLDLSHCTGITDVSPLSVLSSLRTLD 325
Query: 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
+S C I + L++L L +L+L GC + L+SL +L L YL+
Sbjct: 326 LSH-----CRGITDV----SPLSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373
>gi|406835554|ref|ZP_11095148.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 392
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 137/296 (46%), Gaps = 11/296 (3%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L ++T +N + VT+A S+S L L L L+ +++++ CEK +++ +L+VL L
Sbjct: 89 LNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTNEACEKIAELPALEVLILSDT 148
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+ D + L L+NL+SL L C + G + L+ LE+ T + L +
Sbjct: 149 VVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLVCN 208
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG---LTHLDL 405
L S+ LS I+D L L L ++ L + I GLA G L L L
Sbjct: 209 AKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKELSL 268
Query: 406 FGARITDSGAAYLRNFKNLRSL---EICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTD 461
F + GA + NFK++ L EI L D G + ++ + +L LN S+ +L
Sbjct: 269 FKCPLDGMGAKAIGNFKSVEKLVLGEIP--QLDDEGLMTMVRGMKNLKYLNCSKTPSLFG 326
Query: 462 K-TLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ + G L L++ SRI + +K +KNL+ L + ++A + L
Sbjct: 327 TLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAEL 382
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 4/192 (2%)
Query: 328 LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
LK E++D+ + + L LS GL + IN F+ ++ + ++ LS L+ L L + ++
Sbjct: 69 LKPSEINDSAI--TQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRV 126
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
T+ + L L L L + D G A L NL+SLE+ LT AG + I
Sbjct: 127 TNEACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFP 186
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
+L L + + NL D +L+L+ LVSL +SN+ IT GL L L + L
Sbjct: 187 ALEYLEI-RRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETG 245
Query: 507 VTANDIKRLQSR 518
+ + Q R
Sbjct: 246 IHGWGLAHAQKR 257
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 26/231 (11%)
Query: 281 KVLNLGFNEITDECLVHL----KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
K L +EI D + L +GL + +N D + +++ L L+ L LS T
Sbjct: 65 KFKTLKPSEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSST 124
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+V + ++ L LE + LS T + D + L+ LS+LKSL L +T G A+ +
Sbjct: 125 RVTNEACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGA 184
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L +L++ + D + N K L SL + +TD G+ + L + +L ++
Sbjct: 185 FPALEYLEIRRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNE- 243
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
TG+ +++++ G KNL+ L+L C +
Sbjct: 244 --------------TGIHGWGLAHAQKRGGG-------KNLKELSLFKCPL 273
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 133/325 (40%), Gaps = 63/325 (19%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
+GL ++ +N + + +T + +S L+ L+ L++S ++VT+
Sbjct: 87 EGLNEITEINADF-STVTSAAFASISKLSKLRQLRLSSTRVTNEA--------------- 130
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
C I L L V + L V + +LS L +L L L+RC L+ G
Sbjct: 131 -CEKIAELPALEVLI----------LSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGF 179
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ +L+ L + + D L + L SL L + I D+GL L L ++ L
Sbjct: 180 QAIGAFPALEYLEIRRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVL 239
Query: 332 ELSDTQVGSSGLRHLS---GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQIT 387
E ++T + GL H G NL+ ++L + + + S++ L L + Q+
Sbjct: 240 EFNETGIHGWGLAHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQLD 299
Query: 388 DTGLAALTSLTGLTHLD---------LFG---------------------ARITDSGAAY 417
D GL +T + G+ +L LFG +RI D +
Sbjct: 300 DEGL--MTMVRGMKNLKYLNCSKTPSLFGTLGFKALLGSKDLEELHIGECSRIGDDAVPF 357
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHI 442
++ KNL+ L + G ++ G+ +
Sbjct: 358 IKKMKNLKILRVHGTSISARGMAEL 382
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 25/295 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S VT + + S L+ L + ++++ E + L L L + + G+ A
Sbjct: 100 STVTSAAFASISKLSKLRQLRLS-STRVTNEACEKIAELPALEVLILS-DTVVDDVGVAA 157
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L NL L+L RC G + LE L I+ N + D + + L SL+
Sbjct: 158 LSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEIRRTN-LDDVSLDLVCNAKTLVSLR 216
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK-LTLLNLEGCPVTAA 245
+S + +TD G+ L L V+ + I H K L L+L CP+
Sbjct: 217 LSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAHAQKRGGGKNLKELSLFKCPLDGM 276
Query: 246 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLN----------LGFNEITDE 293
++ S+ L L QL D+G + + +LK LN LGF
Sbjct: 277 GAKAIGNFKSVEKLVLGEIPQLDDEGLMTMVRGMKNLKYLNCSKTPSLFGTLGFK----- 331
Query: 294 CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
L G +LE L++ C IGD+ + + + NLK L + T + + G+ L+
Sbjct: 332 ---ALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 19/202 (9%)
Query: 14 LVYSRC-LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
L SRC LT +A + + ++D +D++ + +L+S+ LS + +TD
Sbjct: 167 LELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLVCN-AKTLVSLRLSNNPITDQ 225
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFAG 129
GL L ++ L+FN I GL H + G NL LS + + G KA
Sbjct: 226 GLDALGKLPGIEVLEFNET-GIHGWGLAHAQKRGGGKNLKELSLFK-CPLDGMGAKAIGN 283
Query: 130 LINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDM------KPLSGLTNL 182
++ KL L ++ GL+ + MK N+K+ NC + K L G +L
Sbjct: 284 FKSVEKLVLGEIPQLDDEGLMTMVRGMK----NLKYLNCSKTPSLFGTLGFKALLGSKDL 339
Query: 183 KSLQI-SCSKVTDSGIAYLKGL 203
+ L I CS++ D + ++K +
Sbjct: 340 EELHIGECSRIGDDAVPFIKKM 361
>gi|325111037|ref|YP_004272105.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
gi|324971305|gb|ADY62083.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
Length = 407
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 139/278 (50%), Gaps = 12/278 (4%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
LDSL L L L +++ ++ S I SL L+L E DE + L L L+
Sbjct: 115 LDSLKDFNRLEVLILAHTRITGSRLDQLSSITSLHTLDLTAIEFDDESVPSLASLRQLQR 174
Query: 307 LNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT-GIS 363
L + + + ++G L T + L+ L+LS + V +S L HL+ + L + +SF I
Sbjct: 175 LKVPTSKLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNID 234
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLR 419
D ++ LAGL +LK L+L+ IT AAL +LT L L L F A T + LR
Sbjct: 235 DDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLR 294
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
+ K L +L C +K ++ +S L + L +N NLTD L+ + L ++++
Sbjct: 295 SLKQL-NLNDCKNI---TSLKFLRGMSHLEAIGL-KNTNLTDAILKELQYCLQLKYVDLT 349
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
RI + + LK L++++L ++ +++I ++S
Sbjct: 350 RCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIRS 387
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 151/326 (46%), Gaps = 19/326 (5%)
Query: 26 EAFRDCALQDL-CL-GQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
E++RD + +L C +P + + + V Q + VDLS S+++D L LKD + L
Sbjct: 68 ESYRDASTLELDCRRAHFPDGSLELLKVFEKQT---VIVDLSLSNISDDSLDSLKDFNRL 124
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA--QGMKAFAGLINLVKLDLERC 141
+ L +I+ L+ L +++L +L AI + + + A L L +L +
Sbjct: 125 EVLILAHT-RITGSRLDQLSSITSLHTLDL---TAIEFDDESVPSLASLRQLQRLKVPTS 180
Query: 142 TRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAY 199
G L M L SL++ + +S + L+ + L L +S +K + D I
Sbjct: 181 KLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPL 240
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA-CLDSLSALGSLFY 258
L GL + + + I +F L +L L L+L C A L+SLS L SL
Sbjct: 241 LAGLPALKWLSLEGTSITGMF--PAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQ 298
Query: 259 LNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
LNLN C+ + KF + + L+ + L +TD L L+ L+ ++L C IG E
Sbjct: 299 LNLNDCK--NITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTRCRIGKE 356
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGL 343
+ ++ L L+ + LS TQ+ S +
Sbjct: 357 TISTISQLKLLQTISLSGTQIDSDNI 382
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 26/181 (14%)
Query: 355 INLSFTGISDGS------------------------LRKLAGLSSLKSLNLDARQITDTG 390
++LS + ISD S L +L+ ++SL +L+L A + D
Sbjct: 103 VDLSLSNISDDSLDSLKDFNRLEVLILAHTRITGSRLDQLSSITSLHTLDLTAIEFDDES 162
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 448
+ +L SL L L + +++++ G A L LRSL++ G G+ ++ + H+ + L
Sbjct: 163 VPSLASLRQLQRLKVPTSKLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRL 222
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+L +S N+ D + L++GL L L++ + IT L L NL +L+L C
Sbjct: 223 NVLGVSFAKNIDDDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFN 282
Query: 509 A 509
A
Sbjct: 283 A 283
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 129/311 (41%), Gaps = 65/311 (20%)
Query: 142 TRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-- 198
TRI G L L + L +L++ D + L+ L L+ L++ SK+++ G A
Sbjct: 132 TRITGSRLDQLSSITSLHTLDLTAIE-FDDESVPSLASLRQLQRLKVPTSKLSEDGFALL 190
Query: 199 -----YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
+L+ L +S R + +LT L K+ LN+ L
Sbjct: 191 CTRMPFLRSLDLSG----------RRGVANSWLTHLAKMPRLNV---------------L 225
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
G F N++ DD + + +LK L+L IT L LTNL++L+L C
Sbjct: 226 GVSFAKNID-----DDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCT 280
Query: 314 I-GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
+ L +L+ L +LK L L+D + N++ SL+ L G
Sbjct: 281 FNAPQTLESLSKLRSLKQLNLNDCK------------------NIT-------SLKFLRG 315
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
+S L+++ L +TD L L L ++DL RI + + K L+++ + G
Sbjct: 316 MSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTRCRIGKETISTISQLKLLQTISLSGT 375
Query: 433 GLTDAGVKHIK 443
+ + I+
Sbjct: 376 QIDSDNIIPIR 386
>gi|290979178|ref|XP_002672311.1| predicted protein [Naegleria gruberi]
gi|284085887|gb|EFC39567.1| predicted protein [Naegleria gruberi]
Length = 347
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 5/261 (1%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
+L+D+ + F K+ L L + + EI + +V LK LT L ++ SC E + +
Sbjct: 84 KLNDEWFDVFEKMNQLTELQIDWVREIDLKRIVDLKQLTKL---SVCSCTEDVEQVKLIG 140
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
+ L L++S + G G + + G+T L + + I + L L LK L +
Sbjct: 141 EMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRISE 200
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+ +G +++ L LT L + ++ GA + NL +L IC + AG K I
Sbjct: 201 NALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKSIS 260
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
+ L L+ N + DK + I + L SL++S + I G + + LKNLR L +
Sbjct: 261 KMKQLLTLSADGNA-IGDKGAKAIGEMKQLTSLHLSFNHIGFEGAKAISELKNLRYLNMT 319
Query: 504 SCKVTANDIKRLQSRDLPNLV 524
+ +++ + LQ+ LP L+
Sbjct: 320 TNPLSSEGAQLLQNMKLPKLI 340
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ L++LT L++ C + + + L L ++ + D+G + + L L +
Sbjct: 115 IVDLKQLTKLSVCSCTEDVEQVKLIGEMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEI 174
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N I L L L+ L + +G G +++ L L L + Q+G G +
Sbjct: 175 KSNRIGKLGAKALCNLKELKELRISENALGASGAKSISQLKQLTTLTIDYNQLGPEGAKA 234
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S + NL ++++ I + ++ + L +L+ D I D G A+ + LT L L
Sbjct: 235 ISEIPNLTNLSICSDQIGAAGAKSISKMKQLLTLSADGNAIGDKGAKAIGEMKQLTSLHL 294
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
I GA + KNLR L + L+ G + ++++
Sbjct: 295 SFNHIGFEGAKAISELKNLRYLNMTTNPLSSEGAQLLQNM 334
>gi|401420706|ref|XP_003874842.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491078|emb|CBZ26343.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1207
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 145/302 (48%), Gaps = 43/302 (14%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L SL++L L++ P+ L +L+ SL + L+RC+ E ++ L+ L+L
Sbjct: 426 LGSLKQLRCLHILHTPLHETFLQALNTCSSLECIILHRCR-GVRSLEPLRRLEHLQSLSL 484
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLR 344
+TD L+ L G T+L L LD C + +L+ L NL+ LE R
Sbjct: 485 HGLSVTDTDLLSLAGCTHLRQLVLDEC----RQITDLSFLANLRGTLE-----------R 529
Query: 345 HLSGLTNLESINLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGL 391
L T L ++N+ G+ D SLR+L L++L+ LNL +TD G
Sbjct: 530 LLMPRTLLSNVNMQHIGLCDKLVELHLQSLRQLTDIGMLKDLTALRVLNLSDNLVTDEGC 589
Query: 392 AALTSLTGLTHLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
+AL L L L+L R IT AA+ R L SL++ +TD GV+ +++ +
Sbjct: 590 SALHCLPSLQRLNLASCRCITSLAAAFTASGRWMHRLLSLDLSHTNITDVGVQFVQECTD 649
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVS---LNVSNSRITSAGLRHLKP-LKNLRSLTLE 503
L LNL C + L L+ L ++S LN+ +R+T+ +H P +NLR L+L
Sbjct: 650 LRYLNL-YGC----RELRLLPWLQKMISLRWLNLGGTRVTNEETKHYLPCARNLRFLSLS 704
Query: 504 SC 505
C
Sbjct: 705 GC 706
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 9/192 (4%)
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
G+ +L L L+CL + T + + L+ L+ ++LE I L G+ SL L L L
Sbjct: 422 GVRSLGSLKQLRCLHILHTPLHETFLQALNTCSSLECIILHRCRGVR--SLEPLRRLEHL 479
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 434
+SL+L +TDT L +L T L L L R ITD ++L N + L L + L
Sbjct: 480 QSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 537
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
++ ++HI L L+L LTD + ++ LT L LN+S++ +T G L L
Sbjct: 538 SNVNMQHIGLCDKLVELHLQSLRQLTD--IGMLKDLTALRVLNLSDNLVTDEGCSALHCL 595
Query: 495 KNLRSLTLESCK 506
+L+ L L SC+
Sbjct: 596 PSLQRLNLASCR 607
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 148/338 (43%), Gaps = 77/338 (22%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+ L+ L C++L+ L + C QI+D LSF N
Sbjct: 479 LQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD--------------LSFLANLR 524
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + + L++ V + H GL + KL L+++ +TD M L
Sbjct: 525 GTLERLLMPRTLLSNVNMQ-------HIGLCD-----KLVELHLQSLRQLTDIGM--LKD 570
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
LT L+ L +S + VTD G CS L C L SLQ+ LNL
Sbjct: 571 LTALRVLNLSDNLVTDEG----------------CSA---LHC----LPSLQR---LNLA 604
Query: 239 GCPVTAACLDSLSA--------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNE 289
C C+ SL+A + L L+L+ ++D G + + L+ LNL G E
Sbjct: 605 SC----RCITSLAAAFTASGRWMHRLLSLDLSHTNITDVGVQFVQECTDLRYLNLYGCRE 660
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLS- 347
+ L L+ + +L LNL + +E + L NL+ L LS G S +R LS
Sbjct: 661 L--RLLPWLQKMISLRWLNLGGTRVTNEETKHYLPCARNLRFLSLS----GCSSVRLLSF 714
Query: 348 --GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L +LE +NL T ++D L L L+ L+L++
Sbjct: 715 AVKLHHLEYLNLESTSVADSELSCLCHCRKLRYLSLES 752
>gi|290989399|ref|XP_002677325.1| predicted protein [Naegleria gruberi]
gi|284090932|gb|EFC44581.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 135/273 (49%), Gaps = 12/273 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLSISSVIFILCSMIIRLFCLHVFLTSL 229
MK S + NLKSL + ++ YL K L ++I ++ C T+L
Sbjct: 95 MKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFSNITNEEIC--KICTNL 152
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
L + G + L ++ + SL L+++ +L ++ ++ K+ L LN+G N
Sbjct: 153 TNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLNIGDNG 212
Query: 290 ITDECLVHLKGLTNLESLNLDSCGI--GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL- 346
L ++K L L+SLN++ I G L L L +L L +S + + GL++L
Sbjct: 213 TIP--LQYIKSLAGLKSLNINGRFINNGFYELRELKDLHSLTELSVSHNTIKTKGLKYLI 270
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+L S+++S+ G+ GS++K+ L L L++ I+D L +T L LT L++
Sbjct: 271 DTFPDLTSLDISYNGL--GSIKKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLNIS 328
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
+ITD+GA + ++LR++++ +T+ V
Sbjct: 329 SNQITDNGALLFASMESLRNIDVRFNDITNDKV 361
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 328 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-- 384
+K L+ S + S+ ++ S + NL+S+++ I L + L+SLN+
Sbjct: 79 IKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFS 138
Query: 385 QITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
IT+ + + T+LT L + G + Y+ N K+L SL+I L + ++ I
Sbjct: 139 NITNEEICKICTNLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIG 198
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
++ LT LN+ N + L+ I L GL SLN+ N R + G L+ LK+L SLT
Sbjct: 199 KMTHLTSLNIGDNGTI---PLQYIKSLAGLKSLNI-NGRFINNGFYELRELKDLHSLT-- 252
Query: 504 SCKVTANDIKRLQSRDLPNLVSFRPE 529
V+ N IK ++ L L+ P+
Sbjct: 253 ELSVSHNTIK---TKGLKYLIDTFPD 275
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 35/252 (13%)
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL--DSCGIGDEGLVNL-T 323
S D + +S + +LK L++ I + V+L + LESLN+ I +E + + T
Sbjct: 91 STDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFSNITNEEICKICT 150
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L NLK +S + L++++ + +L S+++S T + + L+++ ++ L SLN
Sbjct: 151 NLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLN--- 207
Query: 384 RQITDTG---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
I D G L + SL GL L++ G R ++G F LR L
Sbjct: 208 --IGDNGTIPLQYIKSLAGLKSLNING-RFINNG------FYELREL------------- 245
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
KDL SLT L++S N T LI L SL++S + + S ++ ++ LK+L L
Sbjct: 246 --KDLHSLTELSVSHNTIKTKGLKYLIDTFPDLTSLDISYNGLGS--IKKIRKLKHLTKL 301
Query: 501 TLESCKVTANDI 512
+ + ++ D+
Sbjct: 302 DISNNSISDQDL 313
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 119/263 (45%), Gaps = 36/263 (13%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+SG + L ++ + +L SLD + ++ + L+ + +++LTSL+ N I Q
Sbjct: 160 ISGMSLQYKTLQYITNMKSLTSLDIS-NTELYEEYLQEIGKMTHLTSLNIGDNGTIPLQY 218
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K+ AGL +L I+G +N G +L + L L +L
Sbjct: 219 IKSLAGLKSL---------NINGRFIN-NGFYEL----------------RELKDLHSLT 252
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLTLLNLEGCP 241
L +S + + G+ YL L S+ I L + L+ LT L++
Sbjct: 253 ELSVSHNTIKTKGLKYL-----IDTFPDLTSLDISYNGLGSIKKIRKLKHLTKLDISNNS 307
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
++ L ++ L L LN++ Q++D+G F+ + SL+ +++ FN+IT++ + +G+
Sbjct: 308 ISDQDLIYITCLPQLTKLNISSNQITDNGALLFASMESLRNIDVRFNDITNDKV--FQGM 365
Query: 302 TNLESLNLDSCGIGDEGLVNLTG 324
NLE L S + N G
Sbjct: 366 INLEKLKFKSFSLEPSSRKNKDG 388
>gi|290997409|ref|XP_002681274.1| predicted protein [Naegleria gruberi]
gi|284094897|gb|EFC48530.1| predicted protein [Naegleria gruberi]
Length = 237
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 104/207 (50%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+T L +L + + I D + ++ + L CL+L Q+ + G + +S L NL +N+
Sbjct: 5 MTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGNN 64
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I+D + + L +L L + + +IT ++ L LT L++ I D GA ++
Sbjct: 65 PINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFISE 124
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K+L+ L+I G++ G K I +L LT+L +SQN + D+ +IS + L L + +
Sbjct: 125 IKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQD 184
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKV 507
I +AG + + L L + ++
Sbjct: 185 CFIGNAGAISISRMDKLTHLDISENEI 211
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 5/194 (2%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ D+ + S++ L L+L N+I +E + L NL LN+ + I DEG+ ++ L
Sbjct: 18 IDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGNNPINDEGIESICQL 77
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
NL L +S ++ S + +S L NL +N+++ I D + ++ + SLK L++
Sbjct: 78 DNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFISEIKSLKILDISLNG 137
Query: 386 ITDTGLAALTSLTGLTHLDL---FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
I+ G +++ L LT L + FG I D GA + K L L I + +AG I
Sbjct: 138 ISPIGAKSISELDQLTVLYISQNFG--IGDEGARMISEMKQLNELYIQDCFIGNAGAISI 195
Query: 443 KDLSSLTLLNLSQN 456
+ LT L++S+N
Sbjct: 196 SRMDKLTHLDISEN 209
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 1/234 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L + +LT L + + + +S + L L+L Q+ ++G + S++ +L LN
Sbjct: 1 MLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLN 60
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G N I DE + + L NL L + S I + ++ L NL L ++ +G G +
Sbjct: 61 IGNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAK 120
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHL 403
+S + +L+ +++S GIS + ++ L L L + I D G ++ + L L
Sbjct: 121 FISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNEL 180
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
+ I ++GA + L L+I + G I+D+ L+ L++ C
Sbjct: 181 YIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGETVIRDMKHLSYLSIEYQC 234
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 114/279 (40%), Gaps = 62/279 (22%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
++ LT+L NN I +K + + L LDLE
Sbjct: 5 MTQLTTLEIG-NNLIDDNMVKLISEMKQLTCLDLE------------------------- 38
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
N I + K +S L NL L I + + D GI +C
Sbjct: 39 INQIFNEGAKSISELRNLTYLNIGNNPINDEGIES------------IC----------- 75
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L LT L + +T+ +S L +L +LN+ + D+G + S+I SLK+L+
Sbjct: 76 ---QLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFISEIKSLKILD 132
Query: 285 LGFNEITDECLVHLKGLTNLESLNL----DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
+ N I+ + K ++ L+ L + + GIGDEG ++ + L L + D +G+
Sbjct: 133 ISLNGISP---IGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQDCFIGN 189
Query: 341 SGLRHLSGLTNLESINLSFTGIS---DGSLRKLAGLSSL 376
+G +S + L +++S I + +R + LS L
Sbjct: 190 AGAISISRMDKLTHLDISENEIQIEGETVIRDMKHLSYL 228
>gi|290971190|ref|XP_002668408.1| predicted protein [Naegleria gruberi]
gi|284081802|gb|EFC35664.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++ + L L++S +G G +++S + L S+N+ + ISD + ++ + L LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+ +I D G ++ + LT L++ I D GA ++ K L SL + ++ G K+
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
I ++ L LLN+ N ++D+ + IS + L SL+ +N
Sbjct: 249 ISEMKQLILLNIGSN-RISDEGAKYISEMKQLTSLHTTN 286
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Query: 331 LELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
+E S +GS ++ +S + L S+++S I + ++ + L SLN+ QI+D
Sbjct: 113 VEFSGYLLGSRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDK 172
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G ++ + L L++ RI D GA Y+ K L SL + + D G K I ++ LT
Sbjct: 173 GAKYISEMKQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLT 232
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
LN+ +N ++ + + IS + L+ LN+ ++RI+ G +++ +K L SL
Sbjct: 233 SLNVYKN-RISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%)
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
E + + + L SL++ IG EG ++ + L L + Q+ G +++S + L
Sbjct: 124 ERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQL 183
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+N+ I D + ++ + L SLN+ +I D G ++ + LT L+++ RI+
Sbjct: 184 ILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISV 243
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
GA Y+ K L L I ++D G K+I ++ LT L+
Sbjct: 244 EGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
++ + LT LD+ I GA Y+ K L SL I ++D G K+I ++ L LLN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
N + D+ + IS + L SLNVSN+ I G + + +K L SL + +++ K
Sbjct: 189 GSN-RIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAK 247
Query: 514 RL 515
+
Sbjct: 248 YI 249
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%)
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ L L++ N I E ++ + L SLN+ I D+G ++ + L L +
Sbjct: 130 SEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNIG 189
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
++G G +++S + L S+N+S I D + ++ + L SLN+ +I+ G +
Sbjct: 190 SNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKYI 249
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
+ + L L++ RI+D GA Y+ K L SL
Sbjct: 250 SEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 80/156 (51%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT L++ + +S + L LN+ Q+SD G + S++ L +LN
Sbjct: 128 FISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLN 187
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G N I DE ++ + L SLN+ + I DEG ++ + L L + ++ G +
Sbjct: 188 IGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAK 247
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
++S + L +N+ ISD + ++ + L SL+
Sbjct: 248 YISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 81/154 (52%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+S + L L+++ + +G + S++ L LN+ +N+I+D+ ++ + L LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
S IGDEG ++ + L L +S+ ++ G + +S + L S+N+ IS +
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
++ + L LN+ + +I+D G ++ + LT L
Sbjct: 249 ISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ + +K + + L LD+ + G + + +L SLNI + N I+D K +S +
Sbjct: 122 SRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNI-YYNQISDKGAKYISEM 180
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
L L I +++ D G Y ++ +++LT LN+
Sbjct: 181 KQLILLNIGSNRIGDEGAKY--------------------------ISEMKQLTSLNVSN 214
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---CLV 296
+ +S + L LN+ + ++S +G + S++ L +LN+G N I+DE +
Sbjct: 215 NEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKYISEMKQLILLNIGSNRISDEGAKYIS 274
Query: 297 HLKGLTNLESLN 308
+K LT+L + N
Sbjct: 275 EMKQLTSLHTTN 286
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 27/182 (14%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SL+I N I K +S + L SL I ++++D G Y+
Sbjct: 132 MKQLTSLDIS-HNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYI------------- 177
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+ +++L LLN+ + +S + L LN++ ++ D+G +
Sbjct: 178 -------------SEMKQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKF 224
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S++ L LN+ N I+ E ++ + L LN+ S I DEG ++ + L L
Sbjct: 225 ISEMKQLTSLNVYKNRISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLHT 284
Query: 334 SD 335
++
Sbjct: 285 TN 286
>gi|343418611|emb|CCD19670.1| hypothetical protein, conserved in T. vivax [Trypanosoma vivax
Y486]
Length = 840
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 151/523 (28%), Positives = 238/523 (45%), Gaps = 74/523 (14%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+L L + V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 169 TLQELYLPKVY-VDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLDLN 223
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
CI I GL L GL+ L L RR N+ +
Sbjct: 224 GCIGIV-RGLHELCGLTTLQELYLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVSPL 282
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L +
Sbjct: 283 ARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELYL-WQLCVDDAFLRDLTCHERLRRLSL 341
Query: 188 -SCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLTLLNLEGCPVT 243
SC+++TD S +A ++ S+ ++ C+ I+R LHV LT+LQ+L L L V
Sbjct: 342 NSCTRITDVSPLARMR--SLENLDLNDCTGIVRG--LHVLCGLTTLQELCLWQL---CVD 394
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
A + L+ L L+LN C + + + L + +
Sbjct: 395 DAFVRDLTCHERLRRLSLN-------SCTRITNVSPLARMR------------------S 429
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGI 362
LE LNL+ C GL L GL L+ L L V + LR L+ L ++L S T I
Sbjct: 430 LEILNLNGCTGIVRGLHVLCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRI 489
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
+D S LA + SL+ L+L+ GL L LT L L L + D+ L +
Sbjct: 490 TDVS--PLARMRSLEMLDLNGCTGIVRGLHVLCGLTTLQELCLAEVPVNDALLRDLTCHE 547
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
LR L + V + + SL +L+L+ +C + L + GLT L L +
Sbjct: 548 RLRELSL-NSCTRITDVSPLARMRSLEMLDLN-DCTGIVRGLHELCGLTTLQELCLWQLC 605
Query: 483 ITSAGLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSRDLPNL 523
+ +A LR L + LR L+L SC ++T + + R++S ++ +L
Sbjct: 606 VDNAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDL 648
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 198/449 (44%), Gaps = 73/449 (16%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCS 190
+L LDL CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L + SC+
Sbjct: 3 SLEMLDLNDCTGIVRGLHVLCGLTTLQELCL-WQLCVDDALLRDLTCHERLRELSLNSCT 61
Query: 191 KVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLTLLNLEGCPVTAACL 247
++TD S +A ++ L I ++ C+ I+R LHV LT+LQ+L L N+ V A +
Sbjct: 62 RITDVSPLARMRSLEILNLND--CTGIVRG--LHVLCGLTTLQELCLANVN---VDDAFV 114
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
L+ L L+LN C D +++ SL++LNL L L GLT L+ L
Sbjct: 115 RDLTCHERLRRLSLNSCTRITDV-SPLARMRSLEMLNLNDCTGIVRGLHELCGLTTLQEL 173
Query: 308 NLDSCGIGDEGLVNLT--------------------GLCNLKCLELSDTQ--VG-SSGLR 344
L + D L +LT L ++ LE+ D +G GL
Sbjct: 174 YLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDLNGCIGIVRGLH 233
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDT-------------- 389
L GLT L+ + L + + LR L L+ L+L++ +ITD
Sbjct: 234 ELCGLTTLQELYLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDL 293
Query: 390 --------GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
GL L LT L L L+ + D+ L + LR L +
Sbjct: 294 NDCTGIVRGLHELCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSL-------NSCTR 346
Query: 442 IKDLSSLTLLNLSQNCNLTDKT-----LELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
I D+S L + +N +L D T L ++ GLT L L + + A +R L +
Sbjct: 347 ITDVSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQELCLWQLCVDDAFVRDLTCHER 406
Query: 497 LRSLTLESCKVTAN--DIKRLQSRDLPNL 523
LR L+L SC N + R++S ++ NL
Sbjct: 407 LRRLSLNSCTRITNVSPLARMRSLEILNL 435
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 152/523 (29%), Positives = 240/523 (45%), Gaps = 74/523 (14%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+L L Q V+D ++ D+ + LS++ S + +TD S L ++ +L++LD N
Sbjct: 311 TLQELYLWQL-CVDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLENLDLN 365
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
C I GL L GL+ L L RR N+ +
Sbjct: 366 DCTGIV-RGLHVLCGLTTLQELCLWQLCVDDAFVRDLTCHERLRRLSLNSCTRITNVSPL 424
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L L+L CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L +
Sbjct: 425 ARMRSLEILNLNGCTGIVRGLHVLCGLTTLQELYL-WQLCVDDAFLRDLTCHERLRRLSL 483
Query: 188 -SCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLTLLNLEGCPVT 243
SC+++TD S +A ++ L + + C+ I+R LHV LT+LQ+L L + PV
Sbjct: 484 NSCTRITDVSPLARMRSLEMLDLNG--CTGIVRG--LHVLCGLTTLQELCLAEV---PVN 536
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
A L L+ L L+LN C ITD + L + +
Sbjct: 537 DALLRDLTCHERLRELSLNSC-----------------------TRITD--VSPLARMRS 571
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGI 362
LE L+L+ C GL L GL L+ L L V ++ LR L+ L ++L S T I
Sbjct: 572 LEMLDLNDCTGIVRGLHELCGLTTLQELCLWQLCVDNAFLRDLTCHERLRRLSLNSCTRI 631
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
+D S LA + SL+ L+L+ GL L LT L L L+ + ++ L +
Sbjct: 632 TDVS--PLARMRSLEMLDLNGCIGIVRGLHELCGLTTLQELYLWQLCVDNAFLRDLTCHE 689
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
LR L + V + + SL +L+L+ +C + L + GLT L L +
Sbjct: 690 RLRRLSL-NSCTRITDVSPLARMRSLEMLDLN-DCTGIVRGLHELCGLTTLQELYLWQLC 747
Query: 483 ITSAGLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSRDLPNL 523
+ A LR L + LR L+L SC ++T + + R++S ++ +L
Sbjct: 748 VDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDL 790
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 147/521 (28%), Positives = 235/521 (45%), Gaps = 70/521 (13%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL V+D ++ D+ + LS++ S + +TD S L ++ +L+ L+ N
Sbjct: 98 TLQELCLANV-NVDDAFVRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLNLN 152
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
C I GL L GL+ L L RR N+ +
Sbjct: 153 DCTGIV-RGLHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 211
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL C I GL L GL L+ L + W C+ ++ ++ L+ L+ L +
Sbjct: 212 ARMRSLEMLDLNGCIGIVRGLHELCGLTTLQELYL-WQLCVDNAFLRDLTCHERLRRLSL 270
Query: 188 -SCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
SC+++TD S +A ++ L + + C+ I+R LT+LQ+L L L V A
Sbjct: 271 NSCTRITDVSPLARMRSLEMLDLND--CTGIVRGLHELCGLTTLQELYLWQL---CVDDA 325
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
L L+ L L+LN C ITD + L + +LE
Sbjct: 326 FLRDLTCHERLRRLSLNSC-----------------------TRITD--VSPLARMRSLE 360
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISD 364
+L+L+ C GL L GL L+ L L V + +R L+ L ++L S T I++
Sbjct: 361 NLDLNDCTGIVRGLHVLCGLTTLQELCLWQLCVDDAFVRDLTCHERLRRLSLNSCTRITN 420
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
S LA + SL+ LNL+ GL L LT L L L+ + D+ L + L
Sbjct: 421 VS--PLARMRSLEILNLNGCTGIVRGLHVLCGLTTLQELYLWQLCVDDAFLRDLTCHERL 478
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
R L + V + + SL +L+L+ C + L ++ GLT L L ++ +
Sbjct: 479 RRLSL-NSCTRITDVSPLARMRSLEMLDLN-GCTGIVRGLHVLCGLTTLQELCLAEVPVN 536
Query: 485 SAGLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSRDLPNL 523
A LR L + LR L+L SC ++T + + R++S ++ +L
Sbjct: 537 DALLRDLTCHERLRELSLNSCTRITDVSPLARMRSLEMLDL 577
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 124/458 (27%), Positives = 195/458 (42%), Gaps = 63/458 (13%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
LQ+LCL Q V+D ++ D+ + LS++ S L ++ +L+ L+ N
Sbjct: 382 TLQELCLWQL-CVDDAFVRDLTCHERLRRLSLNSCTRITNVSPLARMR---SLEILNLNG 437
Query: 91 CIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAFA 128
C I GL L GL+ L L RR N+ + A
Sbjct: 438 CTGIV-RGLHVLCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLA 496
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI- 187
+ +L LDL CT I GL L GL L+ L + + D+ ++ L+ L+ L +
Sbjct: 497 RMRSLEMLDLNGCTGIVRGLHVLCGLTTLQELCLAEVP-VNDALLRDLTCHERLRELSLN 555
Query: 188 SCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
SC+++TD S +A ++ L + + C+ I+R LT+LQ+L L L V A
Sbjct: 556 SCTRITDVSPLARMRSLEMLDLND--CTGIVRGLHELCGLTTLQELCLWQL---CVDNAF 610
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L L+ L L+LN C D +++ SL++L+L L L GLT L+
Sbjct: 611 LRDLTCHERLRRLSLNSCTRITDV-SPLARMRSLEMLDLNGCIGIVRGLHELCGLTTLQE 669
Query: 307 LNLDSCGIGDEGLVNLT-----------------------GLCNLKCLELSDTQVGSSGL 343
L L + + L +LT + +L+ L+L+D GL
Sbjct: 670 LYLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDLNDCTGIVRGL 729
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 402
L GLT L+ + L + D LR L L+ L+L++ +ITD ++ L + L
Sbjct: 730 HELCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEM 787
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
LDL G G L L+ L + + DA V+
Sbjct: 788 LDLNGCIGIVRGLHVLCGLTTLQELCLANVNVDDAFVR 825
>gi|320166209|gb|EFW43108.1| ephrin type-B receptor 3 [Capsaspora owczarzaki ATCC 30864]
Length = 1219
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 142/342 (41%), Gaps = 35/342 (10%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLSISSVIF-ILCSMIIRLFC 221
N IT +GLT L LQ++ + +T D A L L+ + F + S+ F
Sbjct: 63 NQITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISANSFA 122
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L L LLN C +T+ ++ + L L + ++ Q++ FS + +LK
Sbjct: 123 ------GLTVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALK 176
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
+L L N+IT GLT L L+LDS I L G+ LK L L+ Q+
Sbjct: 177 ILYLNGNQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQI--- 233
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
TGIS G LS+LK L L+ QIT A T LT LT
Sbjct: 234 ------------------TGISAG---VFTDLSALKELWLNDNQITSISANAFTGLTALT 272
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L L+ +IT + L +L + +T L++LT L L N +T
Sbjct: 273 FLRLYVNQITSISPGAFTDLGALTTLILSTNKITSISENAFTGLTALTFLQLDAN-QITS 331
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
+ + L L +L +S + ITS L L +L L+
Sbjct: 332 ISAGAFTDLGALTTLILSINTITSISANAFTGLTALTALYLQ 373
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 168/412 (40%), Gaps = 64/412 (15%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL D ++L FN QI+ GL+ LT L NN IT FA L L +
Sbjct: 54 HLGD----RTLSFN---QITSISANAFAGLTALTDLQLNNNN-ITIIPDYTFANLPALTE 105
Query: 136 LDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L T I + GL L LN C IT + L+ L ++Q+S +++T
Sbjct: 106 LHLFFNPITSISAN--SFAGLTVLNLLNSYNCQ-ITSIAANAFTDLSKLTNMQMSGNQIT 162
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
SI+ +F + + L +L L G +T+ + + L
Sbjct: 163 ----------SIAPNVF----------------SGMSALKILYLNGNQITSISASAFTGL 196
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
+L YL+L+ Q+S F + +LK+L L N+IT G+ S G
Sbjct: 197 TALTYLSLDSNQISSIALNAFPGMSALKILRLNINQIT--------GI---------SAG 239
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+ T L LK L L+D Q+ S +GLT L + L I+ S L
Sbjct: 240 V-------FTDLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQITSISPGAFTDL 292
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
+L +L L +IT A T LT LT L L +IT A + L +L +
Sbjct: 293 GALTTLILSTNKITSISENAFTGLTALTFLQLDANQITSISAGAFTDLGALTTLILSINT 352
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
+T L++LT L L QN L + +GLT L L + + ITS
Sbjct: 353 ITSISANAFTGLTALTALYLQQN-QLDSISAIAFTGLTALRELWLQVNLITS 403
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 1/268 (0%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+T+ ++ + L +L L LN ++ F+ + +L L+L FN IT GL
Sbjct: 65 ITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISANSFAGL 124
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T L LN +C I T L L +++S Q+ S SG++ L+ + L+
Sbjct: 125 TVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALKILYLNGNQ 184
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
I+ S GL++L L+LD+ QI+ L A ++ L L L +IT A +
Sbjct: 185 ITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQITGISAGVFTDL 244
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
L+ L + +T L++LT L L N +T + + L L +L +S +
Sbjct: 245 SALKELWLNDNQITSISANAFTGLTALTFLRLYVN-QITSISPGAFTDLGALTTLILSTN 303
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTA 509
+ITS L L L L++ ++T+
Sbjct: 304 KITSISENAFTGLTALTFLQLDANQITS 331
>gi|290991638|ref|XP_002678442.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
gi|284092054|gb|EFC45698.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
Length = 646
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 159/351 (45%), Gaps = 59/351 (16%)
Query: 64 LSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITA 121
L+ S VT +GL L+ S+ +S+ C +++G L+ L L +L SL+ NN I +
Sbjct: 256 LTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKS 315
Query: 122 QGMKAFAG--LINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
G K A L +L++L+L + C + G GL+ L LN+ C D+
Sbjct: 316 NGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNG-----GLLTLTHLNLSCCALDFDAC 370
Query: 173 MKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
+G L NL L +S + + SGI + +F ++
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQF------------------------IFNGNMPN 406
Query: 232 LTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---- 285
LT L+LE C V + + + SL YLN++ +SD+GC+ +K L + +L
Sbjct: 407 LTWLSLESCEVRPSDCAFIGNADVSSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRD 466
Query: 286 ------GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
GF E+T G+ L L +D+ IGDEG +N++ L L L +S+ +G
Sbjct: 467 CQIGSSGFAELT------ANGIGKLTKLYVDNNNIGDEGCLNISSLPFLNLLSVSNNNLG 520
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
S G R +S L L+ + +S + L LS L+ L+L I D G
Sbjct: 521 SKGCRCISLLPQLQHLTISRNNVGSSGCLYLNALSKLEYLDLVGNDIRDAG 571
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 340 SSGLRHLSGLTNLESINLSFT-------GISDGSLRKLAGLS-SLKSLN-LDARQITDTG 390
SS + L+GLT+LE ++ + +++G L+ L L SL+SLN + I G
Sbjct: 258 SSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKSNG 317
Query: 391 LAALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
L + L L L+L G RI G YL N GG LT L
Sbjct: 318 CKYLANGNLNHLIQLNLSGNRIYSKGCQYLSN----------GGLLT------------L 355
Query: 449 TLLNLSQNCNLTDKTLELISG--LTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLES 504
T LNLS C L + + L LV LN+S + + +G++ + + NL L+LES
Sbjct: 356 THLNLSC-CALDFDACQYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLES 414
Query: 505 CKVTANDIKRLQSRDLPNLV 524
C+V +D + + D+ +LV
Sbjct: 415 CEVRPSDCAFIGNADVSSLV 434
>gi|283779449|ref|YP_003370204.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
gi|283437902|gb|ADB16344.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
Length = 633
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+LG +TD+ L L L+ L+L + D GL L L L L L T + S+
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ ++ L NLE ++LS I+D L K+A L LK L L +TD GLA L SL L
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 403 LDLFGARITDSGAAYLRN 420
LDL G R++ A L++
Sbjct: 598 LDLRGTRVSADAAEKLKS 615
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+GF +++D+ L+ +L+L + D+GL L LK L+LS T+V +GL
Sbjct: 456 VGFLDVSDQDLLACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLE 515
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L LT L + L T IS S+ +A L +L+ L+L I D LA + +L L L
Sbjct: 516 QLDQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLY 575
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVK---HIKDLSSLTL 450
L G +TD+G A L + +NL L++ G ++ DA K IK L+++ L
Sbjct: 576 LVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSRIKSLANVLL 625
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 359 FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
F +SD L LA +S ++NL +TD GLA L L LDL ++TD+G
Sbjct: 458 FLDVSDQDL--LACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLE 515
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
L L L + G ++ A + I L +L L+LS+ N+ D L I+ L L L
Sbjct: 516 QLDQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSK-VNIADDDLAKIATLKQLKVL 574
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
+ + +T AGL L L+NL L L +V+A+ ++L+SR
Sbjct: 575 YLVGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSR 616
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
VT L L L +L+L+ +++D G E+ ++ L L L I+ + + L
Sbjct: 485 VTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIARL 544
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
NLE L+L I D+ L + L LK L L T V +GL L L NLE ++L T
Sbjct: 545 RNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRGTR 604
Query: 362 ISDGSLRKLAGLSSLKSL 379
+S + KL S +KSL
Sbjct: 605 VSADAAEKLK--SRIKSL 620
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L+L R ++D G + + LK L+L ++TD L L LT L L L+ I
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ + L NL+ L+LS + L ++ L L+ + L T ++D L KL L +L+
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 379 LNLDARQIT 387
L+L +++
Sbjct: 598 LDLRGTRVS 606
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
+TD + L LK L +S +KVTD+G+ L L+
Sbjct: 483 TTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLT--------------------- 521
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+L L LEG +++A + +++ L +L L+L++ ++DD K + + LKVL L
Sbjct: 522 -----QLNQLFLEGTAISSASIPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYL 576
Query: 286 GFNEITDECLVHLKGLTNLESLNL 309
+TD L L L NLE L+L
Sbjct: 577 VGTPVTDAGLAKLVSLQNLEMLDL 600
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ +++ L + VTD GL L L+ LD + +++D GLE L L+ L L F
Sbjct: 473 ATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLT-KVTDTGLEQLDQLTQLNQL-FLEG 530
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AI++ + A A L NL +LDL + L + L +L+ L + +TD+ + L
Sbjct: 531 TAISSASIPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLV-GTPVTDAGLAKL 589
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
L NL+ L + ++V+ LK
Sbjct: 590 VSLQNLEMLDLRGTRVSADAAEKLK 614
>gi|300704109|ref|YP_003745711.1| leucine-rich-repeat type III effector protein (gala5) [Ralstonia
solanacearum CFBP2957]
gi|299071772|emb|CBJ43096.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CFBP2957]
Length = 535
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 175/393 (44%), Gaps = 12/393 (3%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR----NNAITAQGMK 125
TD+ L L L++LD + C + GL G+++L+ L R N I G++
Sbjct: 128 TDADLAGLPPT--LKTLDLSRC-RGRGQGLITAAGIAHLSRLPLVRLNLSGNRIGLAGVQ 184
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L +LD+ RC L +L +LN N + ++ L G L SL
Sbjct: 185 RLANHPTLTELDVSRCGIGPEEARALAASARLTTLNASH-NGVGSEGVQALVGCKTLTSL 243
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCPVTA 244
+S + + D A + L S + L R+ L + + LT L++ G +
Sbjct: 244 DLSDNGLGD---AEAQRLGSSERLTTLNVNRNRIDVQGARALAACKTLTSLDIGGNSIGD 300
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
A +++L A L LN+ R ++ G + + +L L + N I DE L T+L
Sbjct: 301 AGVNALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRIDNNNIGDEGANTLAASTSL 360
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
+L+ +S GIG G L L L L +G +G + T L +++ G+SD
Sbjct: 361 TTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLANTTLVWLSVRRNGLSD 420
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
+LA +L +L+ I D G AL + LT L++ I ++GA L L
Sbjct: 421 ACAIRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSNEIGNAGARALAANTML 480
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
+SL++ + +AGV+ + +L+ L +S NC
Sbjct: 481 KSLDLRNNRMLEAGVRALLANRTLSSLGVSFNC 513
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 139/297 (46%), Gaps = 5/297 (1%)
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T LN V + + +L +L L+L+ L D ++ L LN+ N I
Sbjct: 217 TTLNASHNGVGSEGVQALVGCKTLTSLDLSDNGLGDAEAQRLGSSERLTTLNVNRNRIDV 276
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+ L L SL++ IGD G+ L L L + ++G+ G++ L+ L
Sbjct: 277 QGARALAACKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTL 336
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S+ + I D LA +SL +L+ ++ I TG AL + T LT L+L I D
Sbjct: 337 TSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGD 396
Query: 413 SGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+GA A+L N L L + GL+DA + +LT L+ S N + D ++
Sbjct: 397 AGAQAWLAN-TTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNA-IKDAGARALAANR 454
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL-VSF 526
L +LNVS++ I +AG R L L+SL L + ++ ++ L +R L +L VSF
Sbjct: 455 TLTALNVSSNEIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGVSF 511
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 133/305 (43%), Gaps = 17/305 (5%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-----EHLRGLSNLTSLSFRR 115
+++ S + V G+ L C L SLD +SD GL + L LT+L+ R
Sbjct: 218 TLNASHNGVGSEGVQALVGCKTLTSLD------LSDNGLGDAEAQRLGSSERLTTLNVNR 271
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I QG +A A L LD+ + G+ L +L +LN++ I ++
Sbjct: 272 NR-IDVQGARALAACKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAE-IGAHGVQA 329
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTL 234
L+ L SL+I + + D G L+ S+ + L S + L + +LT
Sbjct: 330 LADCKTLTSLRIDNNNIGDEGA---NTLAASTSLTTLHSESNGIGPTGAQALAANTRLTT 386
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LNL + A + A +L +L++ R LSD + + +L L+ N I D
Sbjct: 387 LNLGHNSIGDAGAQAWLANTTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNAIKDAG 446
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L +LN+ S IG+ G L LK L+L + ++ +G+R L L S
Sbjct: 447 ARALAANRTLTALNVSSNEIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSS 506
Query: 355 INLSF 359
+ +SF
Sbjct: 507 LGVSF 511
>gi|421897504|ref|ZP_16327872.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
gi|206588710|emb|CAQ35673.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
Length = 533
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 1/242 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L A L LN+NR ++ G + +L L++G N I D + L L +LN+
Sbjct: 256 LGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNV 315
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ G+G G+ L L L + + +G G + L+ T+L +++ GI +
Sbjct: 316 ERAGVGAHGVQALADSKTLTSLRIDNNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKA 375
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
LA + L +LNL I D G A + T L L + ++D+GA L K L +L+
Sbjct: 376 LAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDA 435
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ DAG + + +LT L++S N + + ++ T L SL++ N+R+ AG+R
Sbjct: 436 GDNAIKDAGARALAANRTLTTLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVR 494
Query: 490 HL 491
L
Sbjct: 495 AL 496
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%)
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ LT L++ G + A +++L A L LN+ R + G + + +L L + N
Sbjct: 284 KTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDNNN 343
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
I DE L T+L +L+ +S GIG G L L L L +G +G +
Sbjct: 344 IGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLAN 403
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
T L S+++ G+SD +LA +L +L+ I D G AL + LT LD+
Sbjct: 404 TTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNE 463
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 464 IGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 511
>gi|413936142|gb|AFW70693.1| F-box family member [Zea mays]
Length = 643
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 148/507 (29%), Positives = 225/507 (44%), Gaps = 94/507 (18%)
Query: 49 MDVIASQGSSLLSVDLSGSD----VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGL-EHL 102
M V+A L + + GS VTD GL + + NL SL I+D GL E
Sbjct: 154 MAVVAGSCGGLEKLSVRGSHPARGVTDQGLSAVARGSPNLSSLALWDVPLITDAGLVEIA 213
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
G L L R IT +G+ AFA G +LV L +E C+ + GL + + MKL++
Sbjct: 214 AGCPLLERLDISRCPLITDKGLAAFAQGCPDLVSLTIEACSSVGDEGLRAIGRSCMKLQA 273
Query: 160 LNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYL--KGLSISSVIFI-LCS 214
+NIK C + D + L S +L +++ +TD+ +A + G +I+ + L +
Sbjct: 274 VNIKNCPLVGDQGISSLVCSATASLAKIRLQGLNITDASLAVIGYYGKAITDLSLTRLAT 333
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSAL-GSLFYLNLNRC-QLSDDGC 271
+ R F + LQ L +++ CP VT L S++ SL L L +C +SD G
Sbjct: 334 VGERGFWVMANAAGLQNLRCMSVTSCPGVTDLALASIAKFCPSLKKLYLRKCGHVSDAGL 393
Query: 272 EKFSKIGSLKVL-NLGFNEITDECLVHLKGLTN----LESLNLDSC-GIGDEGLVNLTGL 325
+ F++ S KV NL E LV + N +L+L C GI D V
Sbjct: 394 KAFTE--SAKVFENLQLEECNRVTLVGILAFLNCSQKFRALSLVKCMGIKDICSVPQLPF 451
Query: 326 C-NLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
C +L+ L + D ++ + G+ LE ++LS G
Sbjct: 452 CRSLRFLTIKDCPGFTNASLAVVGMICPQLEQVDLSGLG--------------------- 490
Query: 383 ARQITDTGLAAL--TSLTGLTHLDLFGAR-ITDSGAAYL--RNFKNLR--SLEICGGGLT 435
++TD GL L +S +GL +DL G + ITD + L R+ K+L+ SLE C +T
Sbjct: 491 --EVTDNGLLPLIQSSESGLIKVDLSGCKNITDVAVSSLVKRHGKSLKKVSLEGC-SKIT 547
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL------R 489
DA +L +S++C T L L++SN ++ G+ R
Sbjct: 548 DA-----------SLFTMSESC-------------TELAELDLSNCMVSDYGVAMLASAR 583
Query: 490 HLKPLKNLRSLTLESC-KVTANDIKRL 515
HLK LR L+L C KVT + L
Sbjct: 584 HLK----LRVLSLSGCSKVTQKSVPFL 606
>gi|449530965|ref|XP_004172462.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 3-like
[Cucumis sativus]
Length = 661
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 206/449 (45%), Gaps = 57/449 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ LCL + D + +IA++ L S+DLS +T+ L + +L+ L C
Sbjct: 187 LKLLCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECH 246
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
I D GLE L+ SL F L+L RC I H GL +L
Sbjct: 247 GIDDEGLEALQRNCKRNSLKF----------------------LNLSRCPSISHSGLSSL 284
Query: 152 -KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-------AYLKGL 203
G L+ LN+ + + IT K L + L+S+++ C +T SG+ A LK L
Sbjct: 285 IIGSEDLQKLNLSYGSSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKPLXNWRASLKEL 344
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL-SALGSLFYLNL 261
S+S C+ + CL + + ++L L++ C +T ++S+ S+ L L +
Sbjct: 345 SLSK-----CAGVTD-ECLSILVQKHKQLRKLDITCCRKITYGSINSITSSCSFLVSLKM 398
Query: 262 NRCQLSDDGCEKFSKIGS----LKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGD 316
C L E + IG L+ L+L NEI +E L + + L L L C I D
Sbjct: 399 ESCSLVPR--EAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCSRLSVLKLGICLNIND 456
Query: 317 EGLVNLTGLC-NLKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLAG 372
+GL ++ C +K L+L T + G+ + G LE IN+++ I+D SL L+
Sbjct: 457 DGLCHIASACPKIKELDLYRSTGITDRGIAATAGGCPALEMINIAYNDKITDSSLISLSK 516
Query: 373 LSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNF-KNLRSLE 428
+LK+L + I+ GL+A+ LT LD+ + D G L F NL+ +
Sbjct: 517 CLNLKALEIRGCCCISSIGLSAIAMGCKQLTVLDIKKCVNVNDDGMLPLAQFSHNLKQIN 576
Query: 429 ICGGGLTDAG---VKHIKDLSSLTLLNLS 454
+ +TD G + I L ++T+L+L+
Sbjct: 577 LSYCSVTDVGLLSLASINCLRNMTILHLA 605
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 215/482 (44%), Gaps = 54/482 (11%)
Query: 59 LLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRN 116
L+ ++LS G +TDS + L + NL+ L + C I+D G+ + G L L
Sbjct: 136 LVEINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAVGCKKLKLLCLNWC 195
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
IT G+ A L LDL L + L LE L ++ C+ I D ++
Sbjct: 196 LHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGIDDEGLEA 255
Query: 176 LS---GLTNLKSLQIS-CSKVTDSGIAY-------LKGLSISSVIFILCSMIIRLFCLHV 224
L +LK L +S C ++ SG++ L+ L++S I M CLH
Sbjct: 256 LQRNCKRNSLKFLNLSRCPSISHSGLSSLIIGSEDLQKLNLSYGSSITTDMA---KCLHN 312
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSAL-GSLFYLNLNRCQLSDDGC-----EKFSKIG 278
F + LQ + L+ C +T + + L SL L+L++C D C +K ++
Sbjct: 313 F-SGLQS---IKLDCCSLTTSGVKPLXNWRASLKELSLSKCAGVTDECLSILVQKHKQLR 368
Query: 279 SL------KVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKC 330
L K+ N IT C + L SL ++SC + E V + C L+
Sbjct: 369 KLDITCCRKITYGSINSITSSC-------SFLVSLKMESCSLVPREAYVLIGQRCPYLEE 421
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNL-DARQIT 387
L+L+D ++ + GL+ +S + L + L I+D L +A +K L+L + IT
Sbjct: 422 LDLTDNEIDNEGLKSISKCSRLSVLKLGICLNINDDGLCHIASACPKIKELDLYRSTGIT 481
Query: 388 DTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 442
D G+AA G L++ + +ITDS L NL++LEI G ++ G+ I
Sbjct: 482 DRGIAATAG--GCPALEMINIAYNDKITDSSLISLSKCLNLKALEIRGCCCISSIGLSAI 539
Query: 443 K-DLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
LT+L++ + N+ D L L L +N+S +T GL L + LR++
Sbjct: 540 AMGCKQLTVLDIKKCVNVNDDGMLPLAQFSHNLKQINLSYCSVTDVGLLSLASINCLRNM 599
Query: 501 TL 502
T+
Sbjct: 600 TI 601
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 126/489 (25%), Positives = 208/489 (42%), Gaps = 65/489 (13%)
Query: 49 MDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHL-RG 104
+ ++ + S+ +DL+ V DS LI + + L+S+D + S+ GL +L
Sbjct: 73 IQTVSPRYPSISKLDLTLCPHVEDSFLISVSTAWKTTLRSIDLSRSRSFSNVGLSNLVTS 132
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLESLN 161
+ L ++ A+T +K A NL KL L RC I G V + G KL+ L
Sbjct: 133 CTGLVEINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAV-GCKKLKLLC 191
Query: 162 IKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
+ WC ITD + ++ L+SL +S +T+
Sbjct: 192 LNWCLHITDLGVGLIATKCKELRSLDLSFLPITEK------------------------- 226
Query: 221 CLHVFLTSLQKLTLLNLEGCP-VTAACLDSLS---ALGSLFYLNLNRCQ-LSDDGCEKFS 275
CL L LQ L L LE C + L++L SL +LNL+RC +S G
Sbjct: 227 CLPTIL-QLQHLEELILEECHGIDDEGLEALQRNCKRNSLKFLNLSRCPSISHSGLSSLI 285
Query: 276 KIGS--LKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGL-------VNLTGL 325
IGS L+ LNL + + IT + L + L+S+ LD C + G+ +L L
Sbjct: 286 -IGSEDLQKLNLSYGSSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKPLXNWRASLKEL 344
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL-AGLSSLKSLNLDA 383
KC ++D + +H L ++++ I+ GS+ + + S L SL +++
Sbjct: 345 SLSKCAGVTDECLSILVQKH----KQLRKLDITCCRKITYGSINSITSSCSFLVSLKMES 400
Query: 384 RQITDTGLAAL--TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGV 439
+ L L LDL I + G + L L+ IC + D G+
Sbjct: 401 CSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCSRLSVLKLGICLN-INDDGL 459
Query: 440 KHIKDL-SSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVS-NSRITSAGLRHLKPLKN 496
HI + L+L ++ +TD+ + +G L +N++ N +IT + L L N
Sbjct: 460 CHIASACPKIKELDLYRSTGITDRGIAATAGGCPALEMINIAYNDKITDSSLISLSKCLN 519
Query: 497 LRSLTLESC 505
L++L + C
Sbjct: 520 LKALEIRGC 528
>gi|326427049|gb|EGD72619.1| hypothetical protein PTSG_04354 [Salpingoeca sp. ATCC 50818]
Length = 1165
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 166/398 (41%), Gaps = 59/398 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP +++++ L S++AFR C +Q L V D ++ V+ +Q +L
Sbjct: 736 LPETLAREVMTAAAEKETLNSKSIKAFRSCGIQHLAFRSSVVVTDAFLRVLGTQFPTLYE 795
Query: 62 VDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA-I 119
+++ + T G+ LK NL SL + +D ++ L L L S N A +
Sbjct: 796 LEIYDCPMLTFRGIAALKGAPNLASLHLSGA--FTDSCVDALMSLHPLEHFSL--NGARV 851
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
++Q F L T H L+SL + C + D + + GL
Sbjct: 852 SSQQFARF----------LSSPTATH-----------LQSLALTSCPALDDGILPSICGL 890
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
T+L L +S + V G L SL L LNL
Sbjct: 891 TDLGHLSLSKTPVRAVGQ----------------------------LASLPHLYSLNLSY 922
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHL 298
+ + +L+A ++ L L LS D ++ GSL L L + D CL H+
Sbjct: 923 TRASEREVGALAAATNMTTLGLFGLNLSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHV 982
Query: 299 KGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESI 355
LT++ +L+L + +GL + + L+ L LS+T + + L H+ GL +L++
Sbjct: 983 CTLTHVTTLDLSGYYQLTPDGLKAIAAMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTF 1042
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
++S T ++D G +++ LNL +IT+T A
Sbjct: 1043 DISRTDVTDACAPAFKGFAAVARLNLSRTRITNTFFHA 1080
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 110/401 (27%), Positives = 173/401 (43%), Gaps = 92/401 (22%)
Query: 157 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
++ L + +TD+ ++ L + L L+I C +T GIA LKG
Sbjct: 767 IQHLAFRSSVVVTDAFLRVLGTQFPTLYELEIYDCPMLTFRGIAALKGAP---------- 816
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
L L+L G T +C+D+L +L L + +LN ++S ++F
Sbjct: 817 ----------------NLASLHLSGA-FTDSCVDALMSLHPLEHFSLNGARVS---SQQF 856
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLEL 333
++ S T+L+SL L SC D+G L ++ GL +L L L
Sbjct: 857 ARFLSSPTA------------------THLQSLALTSCPALDDGILPSICGLTDLGHLSL 898
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA---------------------- 371
S T V + G L+ L +L S+NLS+T S+ + LA
Sbjct: 899 SKTPVRAVG--QLASLPHLYSLNLSYTRASEREVGALAAATNMTTLGLFGLNLSSDAYAP 956
Query: 372 --GLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSL 427
G SL L L +R D LA + +LT +T LDL G ++T G + + L+SL
Sbjct: 957 WAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLTPDGLKAIAAMQQLQSL 1016
Query: 428 EICGGGLTDAGVKHIKD--LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
+ LTDA + HI L SL ++S+ ++TD G + LN+S +RIT+
Sbjct: 1017 SLSNTALTDAALLHIGGVGLPSLDTFDISRT-DVTDACAPAFKGFAAVARLNLSRTRITN 1075
Query: 486 AGLRHLKPLKN---LRSLTLESCKVTA------NDIKRLQS 517
H L + L++L++E + N + RLQS
Sbjct: 1076 TFF-HAHALNDCAALQTLSIERTHTSTKGLAELNGLSRLQS 1115
>gi|320165418|gb|EFW42317.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 953
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 114/255 (44%), Gaps = 2/255 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
T L LT L +T+ D+ + L +L +L+L Q++ F+ + +L L+L
Sbjct: 43 FTGLTALTALYFASNQITSIPADAFTGLTALTHLSLQYNQITSISGTAFTSLTALTYLSL 102
Query: 286 GFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+N+IT LT L L+LDS I + TGL L L L Q+ S +
Sbjct: 103 QYNQITSISGTAFTFNLTALTYLSLDSNQITSIPVGAFTGLTALTYLSLYTNQITSISVN 162
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+GLT L S+ L I+ GL +L L+L QIT A T LT LT+L
Sbjct: 163 AFTGLTALASLVLQNNQITSIPAAACTGLPALTELSLGINQITSIPADAFTGLTALTYLS 222
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ +IT A + L L + G +T L++LT L L QN +T
Sbjct: 223 VENNQITSIPAGAFTDLAALTDLHLDGNQITSIPDFSFTGLTALTTLAL-QNNPITTLPP 281
Query: 465 ELISGLTGLVSLNVS 479
L GL ++L++S
Sbjct: 282 GLFKGLPNALALSLS 296
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 4/253 (1%)
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
Y+N N ++ F+ + +L L+L +N+IT GLT L +L S I
Sbjct: 5 YINSN--PITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSI 62
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSL 376
TGL L L L Q+ S + LT L ++L + I+ S L++L
Sbjct: 63 PADAFTGLTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTAL 122
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
L+LD+ QIT + A T LT LT+L L+ +IT L SL + +T
Sbjct: 123 TYLSLDSNQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITS 182
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
L +LT L+L N +T + +GLT L L+V N++ITS L
Sbjct: 183 IPAAACTGLPALTELSLGIN-QITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAA 241
Query: 497 LRSLTLESCKVTA 509
L L L+ ++T+
Sbjct: 242 LTDLHLDGNQITS 254
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 121/279 (43%), Gaps = 14/279 (5%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
SL +N IS G GL+ LT+L F N IT+ AF GL L L L+ + T
Sbjct: 29 SLLYNQITGISAGTF---TGLTALTALYFASNQ-ITSIPADAFTGLTALTHLSLQYNQIT 84
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
I G L L L++++ + S LT L L + +++T + G
Sbjct: 85 SISG--TAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDSNQITSIPVGAFTG 142
Query: 203 LSISSVIFILCSMIIRLFCLHVF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
L+ + + + + I + ++ F LT+L L L N + + AA L AL L +
Sbjct: 143 LTALTYLSLYTNQITSI-SVNAFTGLTALASLVLQNNQITSIPAAACTGLPALTEL---S 198
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
L Q++ + F+ + +L L++ N+IT L L L+LD I
Sbjct: 199 LGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLDGNQITSIPDF 258
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
+ TGL L L L + + + GL N +++LS+
Sbjct: 259 SFTGLTALTTLALQNNPITTLPPGLFKGLPNALALSLSY 297
>gi|290976088|ref|XP_002670773.1| predicted protein [Naegleria gruberi]
gi|284084335|gb|EFC38029.1| predicted protein [Naegleria gruberi]
Length = 681
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 1/245 (0%)
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
C++SD S++ LK LN+ N + E + +K + L L++ + + ++
Sbjct: 423 CKISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKLKCLDVEVVS 482
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
G+ NL L ++D +G G ++ L L + + I D + ++ + +L L++ +
Sbjct: 483 GMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMKNLTKLDVSS 542
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
I + G +++ L GLT +++ I GA + + L +L I + G K I
Sbjct: 543 NGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEIGPTGAKFIS 602
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
+ +T L++S N ++ D+ IS L L L V+N+ IT GL+ + +KNL+ L +
Sbjct: 603 KMQRVTELDISLN-DIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMKNLQLLDVS 661
Query: 504 SCKVT 508
K++
Sbjct: 662 GNKIS 666
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 111/231 (48%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ +++L LN+ G + + + + L L+++ +L E S + +L L +
Sbjct: 433 ISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKLKCLDVEVVSGMRNLTSLRI 492
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N++ + + L L L + S IGDEG+ +++ + NL L++S +G G
Sbjct: 493 NDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMKNLTKLDVSSNGIGEEGANS 552
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+S L L IN+ F I + L L +L ++ +I TG ++ + +T LD+
Sbjct: 553 ISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDI 612
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
I D GA Y+ + L L + +TD G+K I + +L LL++S N
Sbjct: 613 SLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMKNLQLLDVSGN 663
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 125/255 (49%), Gaps = 1/255 (0%)
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ L L++ C ++ + +S + L LN++ + S + K + L +L++ + +
Sbjct: 413 EHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTK 472
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+ + + G+ NL SL ++ +G +G + L L+ L + +G G+ +S +
Sbjct: 473 LKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHM 532
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
NL +++S GI + ++ L L +N+ I G ++ L LT L +
Sbjct: 533 KNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCE 592
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I +GA ++ + + L+I + D G +I +L L++L ++ N +TD+ L+ I+
Sbjct: 593 IGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNN-EITDEGLKAITQ 651
Query: 470 LTGLVSLNVSNSRIT 484
+ L L+VS ++I+
Sbjct: 652 MKNLQLLDVSGNKIS 666
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 117/249 (46%), Gaps = 5/249 (2%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
D + ++ L+ L++ F +I+D + + + L+ LN+ E + + + L
Sbjct: 404 DRSKSIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQL 463
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLES--INLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L++S T++ + +SG+ NL S IN + GI L +A L L+ L + + I
Sbjct: 464 TILDMSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAEL--IAQLDQLRELFIGSNNI 521
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
D G+ +++ + LT LD+ I + GA + K L + + + G + I +L
Sbjct: 522 GDEGMYSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELE 581
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
LT L L NC + + IS + + L++S + I G ++ L+ L L + + +
Sbjct: 582 QLTTL-LINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNE 640
Query: 507 VTANDIKRL 515
+T +K +
Sbjct: 641 ITDEGLKAI 649
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 124/281 (44%), Gaps = 44/281 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF----CIQISDGGL 99
++D+ + VI SQ L +++SG+ + + +KD L LD ++ C+ +
Sbjct: 425 ISDREISVI-SQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKLKCLDV----- 478
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E + G+ NLTSL +N + QG + A L L +L +
Sbjct: 479 EVVSGMRNLTSLRIN-DNDLGIQGAELIAQLDQLRELFIG-------------------- 517
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG---IAYLKGLSISSVIFILCSMI 216
N I D M +S + NL L +S + + + G I+ LKGL+ +V F L
Sbjct: 518 -----SNNIGDEGMYSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQ- 571
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
+ L++LT L + C + +S + + L+++ + D+G S+
Sbjct: 572 ----QGAESIGELEQLTTLLINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISE 627
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
+ L +L + NEITDE L + + NL+ L++ I DE
Sbjct: 628 LEKLSILYVNNNEITDEGLKAITQMKNLQLLDVSGNKISDE 668
>gi|300697280|ref|YP_003747941.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
gi|299074004|emb|CBJ53541.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
Length = 1051
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 167/377 (44%), Gaps = 7/377 (1%)
Query: 82 NLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+++ LD + C +S+ GL L L SL R I + ++A A +L L+L
Sbjct: 648 SVRHLDLSGCTGAAVSEAGLADL-ARRPLASLDLSRTR-IGDREVQALASSASLTSLNLS 705
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L L SLN+ N I D+ ++ L+G +L SL++ ++ ++GIA
Sbjct: 706 GNRIGDAGAQALGRNTVLTSLNVS-ANPIGDTGVQALAGSRSLTSLELRGIRIGEAGIAA 764
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
L ++ + I + + L Q LT L C +T L+ + SL L
Sbjct: 765 LASNTVLRSLDISSNDLSEQSAAE--LARNQTLTSLKANDCGLTNGMAQQLARIRSLRTL 822
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
+ + D G ++ SL+ LNL N IT + L L+ L SL++ G GD G
Sbjct: 823 EVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDRGA 882
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+ L+ L L+L +GS+G + L+ L S++L I + LA L SL
Sbjct: 883 LLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSL 942
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
N+ ++ D +AL LT LD+ R++ A L L SL I + G
Sbjct: 943 NVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHNHIGPDGA 1002
Query: 440 KHIKDLSSLTLLNLSQN 456
+ + + +SLT L+ N
Sbjct: 1003 QALAESTSLTFLDARAN 1019
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 161/380 (42%), Gaps = 33/380 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L SL+ + I D G++ L
Sbjct: 685 IGDREVQALASS-ASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVS-ANPIGDTGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G +LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 GSRSLTSLELR-GIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
C +T+ + L+ + +L++L++ + + D+G V+ I + +R
Sbjct: 802 DCG-LTNGMAQQLARIRSLRTLEVGSNSIGDTG-----------VLAIARNASLRT---- 845
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
LNL P+T L L +L L+++R D G SK +L L
Sbjct: 846 -----------LNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDRGALLLSKNRALTSL 894
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
LGFN I L L SL+L I L L L +SD ++
Sbjct: 895 KLGFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAA 954
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L+ L ++++S +S + R LAG ++L SLN+ I G AL T LT L
Sbjct: 955 SALAESLTLTALDVSMNRLSSQAARALAGNATLTSLNISHNHIGPDGAQALAESTSLTFL 1014
Query: 404 DLFGARITDSGAAYLRNFKN 423
D AR D G A R +N
Sbjct: 1015 D---ARANDIGEAGARALEN 1031
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 4/198 (2%)
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L SL+L IGD + L +L L LS ++G +G + L T L S+N+S I
Sbjct: 675 LASLDLSRTRIGDREVQALASSASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVSANPIG 734
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
D ++ LAG SL SL L +I + G+AAL S T L LD+ +++ AA L +
Sbjct: 735 DTGVQALAGSRSLTSLELRGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQT 794
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
L SL+ GLT+ + + + SL L + N ++ D + I+ L +LN+S++ I
Sbjct: 795 LTSLKANDCGLTNGMAQQLARIRSLRTLEVGSN-SIGDTGVLAIARNASLRTLNLSHNPI 853
Query: 484 TSAGLRHLKPLKNLRSLT 501
T GLR PL+ R+LT
Sbjct: 854 TLQGLR---PLELSRTLT 868
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 136/310 (43%), Gaps = 26/310 (8%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L S++ L L G V+ A L L A L L+L+R ++ D + + SL
Sbjct: 642 LRALPPSVRHLDLSGCTGAAVSEAGLADL-ARRPLASLDLSRTRIGDREVQALASSASLT 700
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
LNL N I D L T L SLN+ + IGD G+ L G +L LEL ++G +
Sbjct: 701 SLNLSGNRIGDAGAQALGRNTVLTSLNVSANPIGDTGVQALAGSRSLTSLELRGIRIGEA 760
Query: 342 GLRHLSGLTNLESINLSFT------------------------GISDGSLRKLAGLSSLK 377
G+ L+ T L S+++S G+++G ++LA + SL+
Sbjct: 761 GIAALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKANDCGLTNGMAQQLARIRSLR 820
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
+L + + I DTG+ A+ L L+L IT G L + L SL++ G D
Sbjct: 821 TLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDR 880
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
G + +LT L L N + L + T L+SL++ + I A L L
Sbjct: 881 GALLLSKNRALTSLKLGFNGIGSAGAQGLTANRT-LISLDLRGNTIDVAAATALAHTGRL 939
Query: 498 RSLTLESCKV 507
SL + CK+
Sbjct: 940 GSLNVSDCKL 949
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 123/268 (45%), Gaps = 63/268 (23%)
Query: 222 LHVF--LTSLQ---KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
LH + LTSLQ LTL +L+ P T L +L+L+ C
Sbjct: 102 LHHYPNLTSLQLKGNLTLADLKALPAT------------LRHLDLSAC------------ 137
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
GS K + E + +L GL LESLN+ IGD G L +L+ L ++
Sbjct: 138 TGSAK---------SSEAIAYLAGLP-LESLNVAGADIGDGGARLLAANPSLRALNAANG 187
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+G++G R L+ L S++LS GI D R LAG SL +L + +TD G AL
Sbjct: 188 GIGAAGARALAESPVLTSLDLSQNGIGDEGARALAGSRSLTNLAVLNCLVTDVGARALAG 247
Query: 397 LTGLTHLDLFGARITDSG-----AAYLRNF--------------KNLRSLEICGGGLTDA 437
LT LDL G IT++G AAY R ++L SL I G DA
Sbjct: 248 NRTLTALDL-GNLITETGNELEQAAYDRTANEITAQGAWALAQNRSLTSLSIQGNLCGDA 306
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
GV+ + S+LT LN++ TD TLE
Sbjct: 307 GVQALAGSSTLTSLNVA----YTDMTLE 330
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 341 SGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA---RQITDTGLAALTS 396
+ L L LES LSF G +S LR L S++ L+L +++ GLA L
Sbjct: 617 AALGRLQNYPALES--LSFHGHLSIEDLRALP--PSVRHLDLSGCTGAAVSEAGLADLAR 672
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L LDL RI D L + +L SL + G + DAG + + + LT LN+S N
Sbjct: 673 RP-LASLDLSRTRIGDREVQALASSASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVSAN 731
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES---CKVTANDIK 513
+ D ++ ++G L SL + RI AG+ L LRSL + S + +A ++
Sbjct: 732 P-IGDTGVQALAGSRSLTSLELRGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELA 790
Query: 514 RLQS 517
R Q+
Sbjct: 791 RNQT 794
>gi|242057027|ref|XP_002457659.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
gi|241929634|gb|EES02779.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
Length = 81
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 45/53 (84%)
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
L+K++GLSS+K LNLD RQIT+TGLA+L SLTGLTHLDLFGARI DSG R
Sbjct: 29 LKKISGLSSMKPLNLDNRQITNTGLASLASLTGLTHLDLFGARIIDSGMNCFR 81
>gi|4972088|emb|CAB43884.1| putative protein [Arabidopsis thaliana]
gi|7269233|emb|CAB81302.1| putative protein [Arabidopsis thaliana]
Length = 364
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 138/286 (48%), Gaps = 32/286 (11%)
Query: 241 PVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
P T + L SL L G+ F ++ C + + + N F
Sbjct: 10 PKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSF---------- 59
Query: 298 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLES 354
L+ + NLE L+L S GD+ G V G NLK L +SDTQ+ SG+ +L+G + LE+
Sbjct: 60 LETMFNLEHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDTQITPSGVGNLAGHVPQLET 118
Query: 355 INLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+++S T + D S+ ++ + +K+L+L + S G +L + +
Sbjct: 119 LSMSQTFVDDLSILLISTTMPCIKALDL-----------GMNSTLGFYYL-ISPQEEKEK 166
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
A L++ +L +L + L D + + L+ LT L+L+ + +LTD TL +S L L
Sbjct: 167 SLAALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNL 225
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 518
VSL V + +TS GL +P LR+L L+ C +T +DI L R
Sbjct: 226 VSLGVRDGVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDIAGLCKR 271
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 46/206 (22%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC 240
NLK+L +S +++T SG+ L G + +L L + T + L++L +
Sbjct: 90 NLKNLNVSDTQITPSGVGNLAG------------HVPQLETLSMSQTFVDDLSILLIS-- 135
Query: 241 PVTAACLDSL-----SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
T C+ +L S LG +YL + E ++ L
Sbjct: 136 -TTMPCIKALDLGMNSTLG-FYYL-------------------------ISPQEEKEKSL 168
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L+ LT+LE+L+L+ +GD+ L L+ L L L L+ T + S L HLS L NL S+
Sbjct: 169 AALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLTSTSLTDSTLHHLSSLPNLVSL 228
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNL 381
+ ++ L K + L++L+L
Sbjct: 229 GVRDGVLTSNGLEKFRPPNRLRTLDL 254
>gi|195585785|ref|XP_002082659.1| GD25110 [Drosophila simulans]
gi|194194668|gb|EDX08244.1| GD25110 [Drosophila simulans]
Length = 522
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 147/333 (44%), Gaps = 75/333 (22%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCI 92
D+ LG + D + IA +L +++L G ++T++GL+ + L+ L+ C
Sbjct: 249 DMNLGHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCW 308
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-- 150
ISD G+ HL G S T+ G + L L L+ C R+ +
Sbjct: 309 HISDQGIGHLAGFSRETA-----------------EGNLQLEYLGLQDCQRLSDEALGHI 351
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLSISS 207
+GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G I+S
Sbjct: 352 AQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINS 411
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
+ C I S Q LT + L L L+LN+CQ++
Sbjct: 412 LDVSFCDKI-----------SDQALTHI--------------AQGLYRLRSLSLNQCQIT 446
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GL 325
D G K + K L LE+LN+ C I D+GL L L
Sbjct: 447 DHGMLKIA-----------------------KALHELENLNIGQCSRITDKGLQTLAEDL 483
Query: 326 CNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 357
NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 484 TNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 516
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 19/222 (8%)
Query: 300 GLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-G 348
GL L+ LNL SC I D+G+ +L G L+ L L D Q + L H++ G
Sbjct: 295 GLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQG 354
Query: 349 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL 405
LT+L+SINLSF ++D L+ LA + L+ LNL + I+D G+A LT +G+ LD+
Sbjct: 355 LTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDV 414
Query: 406 -FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDK 462
F +I+D ++ + LRSL + +TD G+ I K L L LN+ Q +TDK
Sbjct: 415 SFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDK 474
Query: 463 TLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L+ L LT L ++++ ++++S G+ + L L+ L L
Sbjct: 475 GLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 516
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 163/370 (44%), Gaps = 84/370 (22%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVN--LKGLM 155
RG+ + LS RR+ G+ A +G N+ ++L I + + L
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSITDTSLGRIAQHLR 271
Query: 156 KLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILC 213
LE+L + C IT++ + ++ GL LK L + SC ++D GI +L G S
Sbjct: 272 NLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFS--------- 322
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
++ NL+ L YL L CQ LSD+
Sbjct: 323 ----------------RETAEGNLQ-----------------LEYLGLQDCQRLSDEALG 349
Query: 273 KFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLK 329
++ + SLK +NL F +TD L HL + LE LNL SC I D G+ LT
Sbjct: 350 HIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLT------ 403
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQIT 387
G + + S+++SF ISD +L +A GL L+SL+L+ QIT
Sbjct: 404 -----------------EGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 446
Query: 388 DTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIK 443
D G+ + +L L +L++ +RITD G L + NL+++++ G L+ G+ I
Sbjct: 447 DHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIM 506
Query: 444 DLSSLTLLNL 453
L L LNL
Sbjct: 507 KLPKLQKLNL 516
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 32/228 (14%)
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SIN 356
G+ L SLNL C N+ + ++DT +G +HL L LE N
Sbjct: 232 GVPALTSLNLSGC-------FNVADMNLGHAFSITDTSLGRIA-QHLRNLETLELGGCCN 283
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDLFG--- 407
++ TG+ L GL LK LNL + I+D G+ L + G L+ G
Sbjct: 284 ITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQD 339
Query: 408 -ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
R++D ++ + +L+S L C +TD+G+KH+ + L LNL N++D
Sbjct: 340 CQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIG 398
Query: 464 LE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
+ L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 399 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 446
>gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134]
gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134]
Length = 1282
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 133/484 (27%), Positives = 231/484 (47%), Gaps = 62/484 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L +D+ + +L L+SL+ F S LE+L L+ LT LS N
Sbjct: 219 LKQLELEENDI--KKIENLHHLPQLKSLNLRFN---SFEKLENLDALTELTELSLGYNGI 273
Query: 119 ITAQGMKA----------FAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNIKW 164
+G++ F + L LD LE+ H G+ ++ L KL L
Sbjct: 274 SKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHTGIKKIENLDKLTKLTHLS 333
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
C + ++ L LT L SL + +K+ S I L+ L+ + + + + + ++
Sbjct: 334 LMCSKVTKIENLEALTQLTSLSLHATKI--SKIENLEALTNLTKLRVDGNKVAKIEN--- 388
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L +L +L L L G P++ +++L L L L+L ++ E + +L+ L+
Sbjct: 389 -LDNLTQLDDLMLGGNPISK--IENLGHLIKLRKLDLGGLAITK--IENLEGLRTLEQLD 443
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
LG ++I E + +L+GLT L+ L L + + + NL L L L+LS+T + + +
Sbjct: 444 LGGSQI--ETIENLEGLTGLQKLELRATKVSK--IENLNHLPALTELDLSETAI--TKIE 497
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L+GL L+ ++LS I+ + LAGLS L+ L+L A + L+ + +LTGL L
Sbjct: 498 GLTGLEGLKELSLSKNKIT--KIENLAGLSKLEKLSLCA-----SNLSKIENLTGLPKLR 550
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNLSQNCNLTD 461
+ + L N + L +L+ L + + HI+ + L LNLSQN +
Sbjct: 551 ELC--LEKNAIECLENLRGLPALKEL--DLNNNQITHIQPNALPTQLAELNLSQNQLI-- 604
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL-TLESCKVTANDIKRLQS-RD 519
+E ++G+TGL L++S + I+ ++N L LE+ ++ N I RL++
Sbjct: 605 -KVEHLAGVTGLTELDLSENNISK--------IENFEDLPALETLDLSYNKITRLENLTA 655
Query: 520 LPNL 523
LPNL
Sbjct: 656 LPNL 659
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 40/239 (16%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LTNL+ L+L+ I E + NL L L+ L L + G +L+ LT L + LS
Sbjct: 106 LTNLQYLDLEENDI--EVIENLDHLARLEYLNLRGNAIEKIG--NLNALTQLVHLELS-- 159
Query: 361 GISDGSLRKLAGLSSLKSL-NLDARQITDTGLAALTSLTGLTHLDL----FGARITDSGA 415
SL ++ L+ LK L NLD R+ + L LT LT LDL FG
Sbjct: 160 ---SNSLERVENLNHLKHLQNLDLRENNIKKIENLAGLTALTRLDLGYNGFGK------I 210
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
L N L+ LE+ + ++++ L L LNL N + + LE + LT L
Sbjct: 211 EGLHNLPRLKQLELEENDIKK--IENLHHLPQLKSLNLRFN---SFEKLENLDALTELTE 265
Query: 476 LNVSNSRITS-AGLRHLKPLK-------------NLRSLT-LESCKVTANDIKRLQSRD 519
L++ + I+ GL L LK NL +LT LE + IK++++ D
Sbjct: 266 LSLGYNGISKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHTGIKKIENLD 324
>gi|29823175|emb|CAD15502.2| probable lrr-gala family type III effector protein (gala 4)
[Ralstonia solanacearum GMI1000]
Length = 462
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 128/305 (41%), Gaps = 31/305 (10%)
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
I + I RL L L L++ GC + A L++ +L LN++R + DDG
Sbjct: 156 ITSAGIARLLAL--------PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDG 207
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ L LN+G N I+D L L L++ IGD G L G L
Sbjct: 208 AAALAANPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNK 267
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+ D +G G R L+ L ++L + I G LA L SLN+ + G
Sbjct: 268 LDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAG 327
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
A L + LT LD+ I ++GA L L L + G+ +AG + + ++LT
Sbjct: 328 AALLAASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTA 387
Query: 451 LNLSQN-----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAG 487
L++ N N T TL+ + G L +LNV +RI AG
Sbjct: 388 LDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 447
Query: 488 LRHLK 492
+R L+
Sbjct: 448 MRALE 452
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 27/259 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G +
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSA----------- 263
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
KL L+ C + +L+A +L L+L ++ G E +
Sbjct: 264 ---------------KLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALA 308
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
L LN+ N + L L L++ + GIG+ G L L L +++
Sbjct: 309 ANPRLTSLNVCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKLSVAN 368
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+ +G R L+ T L ++++ I D + LA +L +L+ A I D G AL
Sbjct: 369 NGIEEAGARALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALA 428
Query: 396 SLTGLTHLDLFGARITDSG 414
T L L++ RI ++G
Sbjct: 429 DNTRLATLNVGANRIGEAG 447
>gi|290976022|ref|XP_002670740.1| predicted protein [Naegleria gruberi]
gi|284084302|gb|EFC37996.1| predicted protein [Naegleria gruberi]
Length = 213
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 101/195 (51%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
LN+ ++ +G + S++ L L++ NEI E ++ + L SL++ IG EG
Sbjct: 7 LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
++ + L L++ Q+G G +++S + L S+++ + I + ++ ++ L S
Sbjct: 67 SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L++ + QI G ++ + LT LD+ I G+ Y+ K+L SL+I + G
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSNEIGVEG 186
Query: 439 VKHIKDLSSLTLLNL 453
K+I +++ LT L++
Sbjct: 187 AKYISEMNQLTSLDM 201
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 104/211 (49%), Gaps = 1/211 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ IG EG ++ + L L++ ++G G +++S + L S+++ +
Sbjct: 1 MKQLTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I + ++ ++ L SL++ + QI G ++ + LT LD+ I G+ Y+
Sbjct: 61 EIGVEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISE 120
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
L SL+I + G K I ++ SLT L++ N + + + IS + L SL++ +
Sbjct: 121 MNQLTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYN-EIGVEGSKYISEMKSLTSLDIYS 179
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+ I G +++ + L SL + K+ +
Sbjct: 180 NEIGVEGAKYISEMNQLTSLDMLPIKLVQKE 210
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 90/174 (51%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
LN+G+NEI E + + L SL++ S IG EG ++ + L L++ ++G G
Sbjct: 7 LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+++S + L S+++ I + ++ + L SL++ +I G ++ + LT
Sbjct: 67 SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
LD+ +I GA ++ K+L SL+I + G K+I ++ SLT L++ N
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSN 180
>gi|238008968|gb|ACR35519.1| unknown [Zea mays]
Length = 520
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 148/507 (29%), Positives = 225/507 (44%), Gaps = 94/507 (18%)
Query: 49 MDVIASQGSSLLSVDLSGSD----VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGL-EHL 102
M V+A L + + GS VTD GL + + NL SL I+D GL E
Sbjct: 31 MAVVAGSCGGLEKLSVRGSHPARGVTDQGLSAVARGSPNLSSLALWDVPLITDAGLVEIA 90
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
G L L R IT +G+ AFA G +LV L +E C+ + GL + + MKL++
Sbjct: 91 AGCPLLERLDISRCPLITDKGLAAFAQGCPDLVSLTIEACSSVGDEGLRAIGRSCMKLQA 150
Query: 160 LNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYL--KGLSISSVIFI-LCS 214
+NIK C + D + L S +L +++ +TD+ +A + G +I+ + L +
Sbjct: 151 VNIKNCPLVGDQGISSLVCSATASLAKIRLQGLNITDASLAVIGYYGKAITDLSLTRLAT 210
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSAL-GSLFYLNLNRC-QLSDDGC 271
+ R F + LQ L +++ CP VT L S++ SL L L +C +SD G
Sbjct: 211 VGERGFWVMANAAGLQNLRCMSVTSCPGVTDLALASIAKFCPSLKKLYLRKCGHVSDAGL 270
Query: 272 EKFSKIGSLKVL-NLGFNEITDECLVHLKGLTN----LESLNLDSC-GIGDEGLVNLTGL 325
+ F++ S KV NL E LV + N +L+L C GI D V
Sbjct: 271 KAFTE--SAKVFENLQLEECNRVTLVGILAFLNCSQKFRALSLVKCMGIKDICSVPQLPF 328
Query: 326 C-NLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
C +L+ L + D ++ + G+ LE ++LS G
Sbjct: 329 CRSLRFLTIKDCPGFTNASLAVVGMICPQLEQVDLSGLG--------------------- 367
Query: 383 ARQITDTGLAAL--TSLTGLTHLDLFGAR-ITDSGAAYL--RNFKNLR--SLEICGGGLT 435
++TD GL L +S +GL +DL G + ITD + L R+ K+L+ SLE C +T
Sbjct: 368 --EVTDNGLLPLIQSSESGLIKVDLSGCKNITDVAVSSLVKRHGKSLKKVSLEGC-SKIT 424
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL------R 489
DA +L +S++C T L L++SN ++ G+ R
Sbjct: 425 DA-----------SLFTMSESC-------------TELAELDLSNCMVSDYGVAMLASAR 460
Query: 490 HLKPLKNLRSLTLESC-KVTANDIKRL 515
HLK LR L+L C KVT + L
Sbjct: 461 HLK----LRVLSLSGCSKVTQKSVPFL 483
>gi|168700133|ref|ZP_02732410.1| hypothetical protein GobsU_11435 [Gemmata obscuriglobus UQM 2246]
Length = 167
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 364 DGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
D +++LA L+ L +LNL ++TD G+ L +L LT+LDL G +TD+G L K
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
L LE+ +TDAGVK + L +L L+L +TD + +SGL LV+L++SN++
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLG-GTKVTDAGAKELSGLNFLVTLDLSNTQ 123
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 521
+T AG++ L L L +L L VT +K L + LP
Sbjct: 124 VTDAGVKALTALTGLTTLDLHGTGVTDAGLKELNAA-LP 161
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 316 DEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
D G+ L L L L L T+V G++ L+ L L +++L TG++D +++L+GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L L L + +ITD G+ L +L L HLDL G ++TD+GA L L +L++ +
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 435 TDAGVK 440
TDAGVK
Sbjct: 125 TDAGVK 130
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 268 DDGCEKFSKIGS-LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
D G ++ + + L LNL +TD + L L L +L+L G+ D G+ L+GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L LEL T++ +G++ L+ L NL ++L T ++D ++L+GL+ L +L+L Q+
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSG 414
TD G+ ALT+LTGLT LDL G +TD+G
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAG 152
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
KGLT +LNL + D G+ L L L L+L T V +G++ LSGL L + L
Sbjct: 16 KGLT---TLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLELR 72
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
T I+D +++LA L +L L+L ++TD G L+ L L LDL ++TD+G L
Sbjct: 73 STKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKAL 132
Query: 419 RNFKNLRSLEICGGGLTDAGVKHI 442
L +L++ G G+TDAG+K +
Sbjct: 133 TALTGLTTLDLHGTGVTDAGLKEL 156
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 245 ACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
A + L+AL L LNL R +++D G ++ + + +L L+LG +TD + L GL
Sbjct: 6 AGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKG 65
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L L L S I D G+ L L NL L+L T+V +G + LSGL L +++LS T ++
Sbjct: 66 LTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVT 125
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
D ++ L L+ L +L+L +TD GL L +
Sbjct: 126 DAGVKALTALTGLTTLDLHGTGVTDAGLKELNA 158
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 226 LTSLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L +L K LT LNL VT + L+AL +L L+L ++D G ++ S + L L
Sbjct: 11 LAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKGLTRLE 70
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L +ITD + L L NL L+L + D G L+GL L L+LS+TQV +G++
Sbjct: 71 LRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVK 130
Query: 345 HLSGLTNLESINLSFTGISDGSLRKL 370
L+ LT L +++L TG++D L++L
Sbjct: 131 ALTALTGLTTLDLHGTGVTDAGLKEL 156
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 96 DGGLEHLRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G++ L L+ LT+L+ RR +T G+K A L L LDL G+ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTR-VTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGL 63
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
L L ++ ITD+ +K L+ L NL L + +KVTD+G L GL+
Sbjct: 64 KGLTRLELRSTK-ITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNF 113
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 27/152 (17%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D + +A+ L +++L + VTD G+ L L +LD ++D G++ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLG-GTGVTDAGVKELSGL 63
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT L R+ IT G+K A L NL LDL GG
Sbjct: 64 KGLTRLEL-RSTKITDAGVKELAALKNLNHLDL-------GG------------------ 97
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
+TD+ K LSGL L +L +S ++VTD+G+
Sbjct: 98 TKVTDAGAKELSGLNFLVTLDLSNTQVTDAGV 129
>gi|51850106|dbj|BAD42394.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 462
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 128/305 (41%), Gaps = 31/305 (10%)
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
I + I RL L L L++ GC + A L++ +L LN++R + DDG
Sbjct: 156 ITSAGIARLLAL--------PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDG 207
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ L LN+G N I+D L L L++ IGD G L G L
Sbjct: 208 AAALAANPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNK 267
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+ D +G G R L+ L ++L + I G LA L SLN+ + G
Sbjct: 268 LDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAG 327
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
A L + LT LD+ I ++GA L L L + G+ +AG + + ++LT
Sbjct: 328 AALLAASAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTA 387
Query: 451 LNLSQN-----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAG 487
L++ N N T TL+ + G L +LNV +RI AG
Sbjct: 388 LDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 447
Query: 488 LRHLK 492
+R L+
Sbjct: 448 MRALE 452
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 27/259 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G +
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSA----------- 263
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
KL L+ C + +L+A +L L+L ++ G E +
Sbjct: 264 ---------------KLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALA 308
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
L LN+ N + L L L++ + GIG+ G L L L +++
Sbjct: 309 ANPRLTSLNVCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKLNVAN 368
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+ +G R L+ T L ++++ I D + LA +L +L+ A I D G AL
Sbjct: 369 NGIEEAGARALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALA 428
Query: 396 SLTGLTHLDLFGARITDSG 414
T L L++ RI ++G
Sbjct: 429 DNTRLATLNVGANRIGEAG 447
>gi|256395747|ref|YP_003117311.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
gi|256361973|gb|ACU75470.1| hypothetical protein Caci_6624 [Catenulispora acidiphila DSM 44928]
Length = 175
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+F +G+ +V + +T E LV L G+ L +LNL++ IGD+ L + L L+ L+
Sbjct: 7 RFFDVGAERVY--ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLD 64
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
+S T + +G+RHLSGLT++ + + T ++D LR LA + +L+++NL I+D GL
Sbjct: 65 VSTTDITDAGVRHLSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLR 124
Query: 393 AL 394
L
Sbjct: 125 GL 126
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L+ LNL I D+ L + L L+ L++ + I D G+ +L+GL +++ L + +T+V
Sbjct: 36 LRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGLTDMRHLRIKETRVT 95
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
+GLR L+ + LE++NL ISD LR LA
Sbjct: 96 DAGLRLLAPMGALETVNLRRLDISDEGLRGLA 127
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 53/98 (54%)
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
E LV L G+ L+ L L+ +G L + L L+ +++S T I+D +R L+GL+ +
Sbjct: 25 EDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGLTDM 84
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ L + ++TD GL L + L ++L I+D G
Sbjct: 85 RHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEG 122
Score = 56.2 bits (134), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393
+D +V L L+G+ L ++NL+ I D L + L L+ L++ ITD G+
Sbjct: 18 ADDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRH 77
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRNFK-----NLRSLEICGGGLTDAGVKHIKDLSSL 448
L+ LT + HL + R+TD+G L NLR L+I GL +H + L ++
Sbjct: 78 LSGLTDMRHLRIKETRVTDAGLRLLAPMGALETVNLRRLDISDEGLRGLAERH-RCLDTI 136
Query: 449 TLLNLSQNCNLT 460
+ + C T
Sbjct: 137 VISDEVDECRFT 148
Score = 48.5 bits (114), Expect = 0.009, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+R TR LV L G+ +L +LN+ I D D++ + L L+ L +S + +TD+G+
Sbjct: 20 DRVTR--EDLVALAGMPRLRALNLN-TAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVR 76
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
+L GL+ + L ++ VT A L L+ +G+L
Sbjct: 77 HLSGLT--------------------------DMRHLRIKETRVTDAGLRLLAPMGALET 110
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLN-LGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+NL R +SD+G ++ + L+ + ++ DEC + GL ++ L L +C I
Sbjct: 111 VNLRRLDISDEGLRGLAE--RHRCLDTIVISDEVDECRFTVAGLAEVQRL-LPACEI 164
Score = 47.8 bits (112), Expect = 0.014, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 49/152 (32%)
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
L LAG+ L++LNL+ I D L A+ L GL +
Sbjct: 27 LVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGL------------------------QD 62
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L++ +TDAGV+H+ SGLT + L + +R+T A
Sbjct: 63 LDVSTTDITDAGVRHL-------------------------SGLTDMRHLRIKETRVTDA 97
Query: 487 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
GLR L P+ L ++ L ++ ++ L R
Sbjct: 98 GLRLLAPMGALETVNLRRLDISDEGLRGLAER 129
Score = 43.5 bits (101), Expect = 0.29, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ L LNL+ + D LE + L GL L+VS + IT AG+RHL L ++R L ++
Sbjct: 33 MPRLRALNLN-TAAIGDDDLEAVGRLVGLQDLDVSTTDITDAGVRHLSGLTDMRHLRIKE 91
Query: 505 CKVTANDIKRLQSRDLPNLVSFR 527
+VT ++ L V+ R
Sbjct: 92 TRVTDAGLRLLAPMGALETVNLR 114
Score = 40.8 bits (94), Expect = 1.9, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
++ +T + + A AG+ L L+L L + L+ L+ L++ + ITD+ ++
Sbjct: 19 DDRVTREDLVALAGMPRLRALNLNTAAIGDDDLEAVGRLVGLQDLDVSTTD-ITDAGVRH 77
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYL 200
LSGLT+++ L+I ++VTD+G+ L
Sbjct: 78 LSGLTDMRHLRIKETRVTDAGLRLL 102
>gi|315301242|ref|ZP_07872475.1| internalin A [Listeria ivanovii FSL F6-596]
gi|313630386|gb|EFR98286.1| internalin A [Listeria ivanovii FSL F6-596]
Length = 595
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 39/282 (13%)
Query: 249 SLSALGSLFYLN-LNRCQLSDDGCEKFSK---IGSLKVLNLGFNEITDECLVHLKGLTNL 304
++ ++ + YLN L+R ++ S+ + SL +++G N I++ L L LTNL
Sbjct: 86 NIQSIEGIQYLNNLDRLYFGENNISDISQLSGVTSLTYVDVGENNISN--LSPLANLTNL 143
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
ESL LD I D + NL GL L L L+D + L +SGL NL+ + ISD
Sbjct: 144 ESLGLDKNNISD--ISNLAGLSKLSNLSLNDNNL--DNLSDVSGLINLKELKAGGNSISD 199
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L L+ L ++ SL L I+D L+ L LT + +L+L+ I S + + NF ++
Sbjct: 200 --LTPLSNLINMVSLYLADNNISD--LSPLAKLTKIDYLNLYTNNI--SNISVVANFTDI 253
Query: 425 RSLEICGGGLTDAGV---------KH-----IKDLSSLT-LLNLSQ----NCNLTDKTLE 465
L + +TD V H I D+S+L L NL++ N N+TD L
Sbjct: 254 WGLYLGENNITDIAVLTNLTGLGELHLADNDIGDISNLANLTNLTELQLDNTNITD--LN 311
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
+S LT L L + N+RI+ ++ L+PL NL L L++ ++
Sbjct: 312 PLSNLTNLEYLYLENNRISD--IKSLQPLSNLLFLDLDNNQI 351
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 114/233 (48%), Gaps = 26/233 (11%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSISSVIFILCSMI---IRLFCLH 223
S++ PL+ LTNL+SL + + ++D +G++ L LS++ S + I L L
Sbjct: 132 SNLSPLANLTNLESLGLDKNNISDISNLAGLSKLSNLSLNDNNLDNLSDVSGLINLKELK 191
Query: 224 VFLTSLQKLT----LLNLEGCPVTAACLDSLSALGSLF---YLNLNRCQLSD-DGCEKFS 275
S+ LT L+N+ + + LS L L YLNL +S+ F+
Sbjct: 192 AGGNSISDLTPLSNLINMVSLYLADNNISDLSPLAKLTKIDYLNLYTNNISNISVVANFT 251
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
I L LG N ITD + L LT L L+L IGD + NL L NL L+L +
Sbjct: 252 DIWGLY---LGENNITD--IAVLTNLTGLGELHLADNDIGD--ISNLANLTNLTELQLDN 304
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
T + + L LS LTNLE + L ISD ++ L LS+L L+LD QI D
Sbjct: 305 TNI--TDLNPLSNLTNLEYLYLENNRISD--IKSLQPLSNLLFLDLDNNQIRD 353
>gi|290980573|ref|XP_002673006.1| predicted protein [Naegleria gruberi]
gi|284086587|gb|EFC40262.1| predicted protein [Naegleria gruberi]
Length = 361
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 5/246 (2%)
Query: 272 EKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
+ ++I SLK +N I D E L+G+ +L+ + + G +G+ + L L
Sbjct: 82 QYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIKKIGSLKQLT 141
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L++S +G G++ L+ L+ L + + I D ++ ++ + L L+L +I D
Sbjct: 142 ILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLDLSNCRIMD- 200
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
G+ L+ L LT L L G R+TD + N K L L I L G K I +++ LT
Sbjct: 201 GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLT 260
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
LN+ QN + ++ + L L LN+S ++I G+ + + L LT+ K++
Sbjct: 261 RLNIQQNR--ISQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISE 318
Query: 510 NDIKRL 515
K L
Sbjct: 319 EGAKTL 324
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 3/222 (1%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
SL++LT+L++ + + L+ L L L + + DD + S++ L L+L
Sbjct: 136 SLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLDLSN 195
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
I D + +L L NL SL L + DE + +++ L L L + + Q+G+ G + +
Sbjct: 196 CRIMD-GVQYLSKLENLTSLRLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIG 254
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+T L +N+ IS G ++ L L L LN+ +I DTG+ ++ + LT L +
Sbjct: 255 NMTQLTRLNIQQNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRD 313
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSL 448
+I++ GA L + L L+I +++ + K++ SL
Sbjct: 314 NKISEEGAKTLGLLQKLTYLDISDNSVSNVTANSMQKNMKSL 355
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 4/204 (1%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+LT L +LT L + + + +S + L L+L+ C++ D G + SK+ +L L
Sbjct: 157 WLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLDLSNCRIMD-GVQYLSKLENLTSLR 215
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L N +TDE + + L L L + +G EG ++ + L L + ++ S G++
Sbjct: 216 LCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQQNRI-SQGVK 274
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+L L L +N+S I D + ++ ++ L L + +I++ G L L LT+LD
Sbjct: 275 YLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEEGAKTLGLLQKLTYLD 334
Query: 405 LFGARITDSGAAYLRNFKNLRSLE 428
+ +++ A ++ KN++SL+
Sbjct: 335 ISDNSVSNVTANSMQ--KNMKSLK 356
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I GG++ L LS LT L NN+I +K + + L KLDL C RI G+ L
Sbjct: 150 IGYGGVKWLTQLSQLTELRIG-NNSIFDDDIKMISEMKQLTKLDLSNC-RIMDGVQYLSK 207
Query: 154 LMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
L L SL + C N +TD ++ +S L L L I +++ G + ++ + + I
Sbjct: 208 LENLTSLRL--CGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQ 265
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+ R+ +L L +LT LN+ + + +S + L L + ++S++G +
Sbjct: 266 QN---RISQGVKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEEGAK 322
Query: 273 KFSKIGSLKVLNLGFNEITD 292
+ L L++ N +++
Sbjct: 323 TLGLLQKLTYLDISDNSVSN 342
>gi|71754651|ref|XP_828240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833626|gb|EAN79128.1| hypothetical protein Tb11.53.0001 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1399
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 130/519 (25%), Positives = 202/519 (38%), Gaps = 100/519 (19%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + +TD + H C L +LD +FC ++ D + LSN+T+L
Sbjct: 590 LSNTHITDRDISHFSKCKELVTLDLSFCDELFD-----ITSLSNITTLE----------- 633
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------ 165
L+L+ C++I GL L L +L LN+K
Sbjct: 634 -----------DLNLDNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVK 682
Query: 166 ----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
NC SD+ LS L+ LK L + SGI L G + + L I
Sbjct: 683 LILDNCKGLSDVTFLSSLSTLKELNLHHCDAVTSGIGTL-GRLLQLRVLDLGWTKIDNNS 741
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
L L LNL C + + ++++L +L LN++ C G F + L+
Sbjct: 742 LEDICACSSPLVSLNLSHCKEITS-ISAIASLNALEKLNIDNCCHVTSGWNVFGTLHQLR 800
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-- 339
V L I DE + H+ +L +LNL C + ++T L N+ L +
Sbjct: 801 VAVLSNTRINDENIRHISECKSLNTLNLAFCN----DITDITALSNITMLRELNIDWCFN 856
Query: 340 -SSGLRHLSGLTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLD------------- 382
G+ L L L ++ G S +++ SL LNL+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 383 ---------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
R L ++SL L L+L R+ D + K+L+SL +
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSLNV---- 972
Query: 434 LTDAGVKHIKDLSSL----TLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ +I D+S+L TL L+ N C+ K E LT L +S + +T+ G+
Sbjct: 973 ---SNCNYITDISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGI 1029
Query: 489 RHLKPLKNLRSLTLESCKVTA-----NDIKRLQSRDLPN 522
R L KNLR+L L C + N+IK L+ + N
Sbjct: 1030 RLLSGCKNLRNLELYCCGDVSNIEPINNIKSLEELTIQN 1068
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 130/514 (25%), Positives = 214/514 (41%), Gaps = 103/514 (20%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
+ P+S L L+ L + +V D +L+G+S S
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCD---IWLEGISQSK-------- 965
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
SLQ L N+ C + +LS+L +L LN+N C G E F
Sbjct: 966 ------------SLQSL---NVSNCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ L+V L +T+E + L G NL +L L CG + N+ + N+K LE
Sbjct: 1010 ALTRLRVATLSVTWVTNEGIRLLSGCKNLRNLELYCCG----DVSNIEPINNIKSLEELT 1065
Query: 336 TQ-----------VGSSGLRHLSGLTNLESINLSFTGISDGS---------------LRK 369
Q VG + L L+S S + + + ++
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 370 LAGLSSLKSLNLDA--RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
++ +++LK L + R + D G L L L L L + ++ + ++L+SL
Sbjct: 1126 ISNIATLKELKIAHGDRLLNDVG--DLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSL 1183
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI-TSA 486
+I + HI +L++L LNLS C E ++ L L LN+S++R+ TS
Sbjct: 1184 DI-THSFELPDIYHISNLTALEELNLS-GCYHIISGWEALTALPRLRVLNLSSTRVTTSY 1241
Query: 487 GLRHLKPLKNLRSLTLESCKVTA----NDIKRLQ 516
G ++ K+L +L LESC +T DIK L+
Sbjct: 1242 GGYYISRCKSLITLNLESCDMTDASCLADIKTLE 1275
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 127/478 (26%), Positives = 202/478 (42%), Gaps = 68/478 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL+ L+FN+ I D +E + + L+ LS N++T + + L L +L+L
Sbjct: 228 TNLKCLEFNY-TSIDDSCIEEICECATLSKLSVSECNSLT--DVTPISQLAALEELNLSN 284
Query: 141 CTRIHGG------------------------LVNLKGLMKLESLNIKWCNCITDSDMKPL 176
C I G L +L LE LN+ +CI +D+ PL
Sbjct: 285 CYHITKGIGALVRLLRLRALDLSGVSVEDNFLKDLCDCGPLERLNLS--HCIQLTDINPL 342
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFI--------------LCSMIIRL-- 219
S T ++ L ++ C ++T GI+ + L V+ + +++L
Sbjct: 343 SNATAIQELNLNRCHRIT-QGISVVWELPKLRVLHMKDMHLSESSLDSVGTSESLVKLSI 401
Query: 220 -----FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
F L+S L LN++ C + + L L L LN+ +S G F
Sbjct: 402 ENCAGFGDMTLLSSFVALEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSIG---F 458
Query: 275 SKIGSLK-VLNLGFNEITDECLVHLKGLTN---LESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ IG+ K +L L T L ++ L N LE L+L C D G+ L L LK
Sbjct: 459 TGIGASKSLLQLTIESTTG--LSDVEALANILTLEKLSLLGCNGIDAGIGCLGNLPQLKV 516
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+LS T S LR L + S+NLS S+ ++ L +L LNL + G
Sbjct: 517 LDLSGTNTDSDSLRGLCVSQTIVSLNLSHCW-KVTSVFHISALETLNELNLSDCIRINAG 575
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA--GVKHIKDLSSL 448
AL L L L ITD ++ K L +L++ D + + ++++L
Sbjct: 576 WEALEKLQQLHVAILSNTHITDRDISHFSKCKELVTLDL---SFCDELFDITSLSNITTL 632
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
LNL NC+ K L ++ L L LNV +T++ + L K+ L L++CK
Sbjct: 633 EDLNL-DNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVKLILDNCK 689
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 126/481 (26%), Positives = 210/481 (43%), Gaps = 42/481 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D W++ I SQ SL S+++S + +TD + L S L+ L+ N C +I G E
Sbjct: 953 VCDIWLEGI-SQSKSLQSLNVSNCNYITD--ISALSSLSTLEELNVNCCDRIRKG-WEAF 1008
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+ L + +T +G++ +G NL L+L C + + + + LE L I
Sbjct: 1009 EALTRLRVATLSVT-WVTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELTI 1066
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL 222
+ C+ I + +K + L L++ + S L L S + L C
Sbjct: 1067 QNCHNINEGLLK----VGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD 1122
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
++++ L L + + L L L L L+ + + E KI SLK
Sbjct: 1123 IKLISNIATLKELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKS 1182
Query: 283 LNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L++ + E+ D + H+ LT LE LNL C G LT L L+ L LS T+V +S
Sbjct: 1183 LDITHSFELPD--IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTS 1240
Query: 342 -GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G ++S +L ++NL ++D S LA + +L+ L++ + G +AL +L L
Sbjct: 1241 YGGYYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGKCEELTRGFSALFTLPQL 1298
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
L+L + ITD ++LR +++ I+DL NLS L
Sbjct: 1299 RILNLMDSLITD---------EDLREIQLS---------HTIEDL------NLSYCKELN 1334
Query: 461 DKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519
D T + I + + S R G R L L L + +++ V+ + K L+ R
Sbjct: 1335 DITPVRRIKSIKKMDLHRSSEGRGLREGFRSLLELPCLSWVDIKNANVSFDVYKELKERK 1394
Query: 520 L 520
+
Sbjct: 1395 V 1395
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 111/436 (25%), Positives = 194/436 (44%), Gaps = 54/436 (12%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
L +L +L++ W +T+ ++ LSG NL++L++ C S I + +
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIK------ 1059
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
SL++LT+ N C L + L L L L + Q +
Sbjct: 1060 -----------------SLEELTIQN---CHNINEGLLKVGMLPRLRVLVLRKLQSTYFS 1099
Query: 271 CEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L 325
+ SL L + G E+ D +K ++N+ +L GD L+N G L
Sbjct: 1100 LSSLGESKSLVKLTIEGPEELCD-----IKLISNIATLKELKIAHGDR-LLNDVGDLGKL 1153
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L LS +G++ + + +L+S++++ + + ++ L++L+ LNL
Sbjct: 1154 PWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHS-FELPDIYHISNLTALEELNLSGCY 1212
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+G ALT+L L L+L R+T S G Y+ K+L +L + +TDA + D
Sbjct: 1213 HIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTDASC--LAD 1270
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ +L L++ + C + + L L LN+ +S IT LR ++ + L L
Sbjct: 1271 IKTLEELHIGK-CEELTRGFSALFTLPQLRILNLMDSLITDEDLREIQLSHTIEDLNLSY 1329
Query: 505 CKVTANDI---KRLQS 517
CK NDI +R++S
Sbjct: 1330 CK-ELNDITPVRRIKS 1344
>gi|290979617|ref|XP_002672530.1| predicted protein [Naegleria gruberi]
gi|284086107|gb|EFC39786.1| predicted protein [Naegleria gruberi]
Length = 401
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 157/337 (46%), Gaps = 13/337 (3%)
Query: 163 KWCNCITDSDM--KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
K N + +D+ + LS L + K + +C+ V+ K L +S + C ++L
Sbjct: 23 KLSNSVFSNDVLYEILSFLDDFKFIVTTCTLVSSQFANISKKLKLS----LYCENDMKL- 77
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
FL ++Q LT+ N + C + + + LN++ + C+ ++ L
Sbjct: 78 -KGQFLQNIQSLTV-NRRNRIIAFDC-QLFNLMKDISTLNVSENTFENGHCKYIGQLKHL 134
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L++ N I DE + +L+ L L +LN+ + IG++G + + L CL ++ +GS
Sbjct: 135 TNLDISINLIGDEGVGYLRKLKQLTNLNISNNMIGEKGAQYIGKMKQLTCLNINSNHIGS 194
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G++ L L L ++++ + I + + L+ + L L+++ I + G L L L
Sbjct: 195 EGVKFLKELKELRTLDMVYCYIGEVGAKYLSEMKQLTHLDVECNNI-NGGAKYLGELKEL 253
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
T+L+ I YL + L L + G++ G K I +++ L LN+ N N+
Sbjct: 254 TYLNA-KYNILGDDVRYLSRLELLTDLNVANNGISAKGAKFISEMNRLVNLNIGHN-NIG 311
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
+ + IS + L L++S + I G + + +K L
Sbjct: 312 KEGAKFISQMKKLTCLDISCNSIQDEGAKCISEMKQL 348
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 12/239 (5%)
Query: 271 CEKFSKIGSLKVLNLGFNEITD---ECLVHLKGLTNLE-SLNLDSCGIGDEGLVNLTGLC 326
C+ F+ + + LN+ N + + + LK LTNL+ S+NL IGDEG+ L L
Sbjct: 101 CQLFNLMKDISTLNVSENTFENGHCKYIGQLKHLTNLDISINL----IGDEGVGYLRKLK 156
Query: 327 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L L +S+ +G G +++ + L +N++ I ++ L L L++L++ I
Sbjct: 157 QLTNLNISNNMIGEKGAQYIGKMKQLTCLNINSNHIGSEGVKFLKELKELRTLDMVYCYI 216
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
+ G L+ + LTHLD+ I + GA YL K L L L D V+++ L
Sbjct: 217 GEVGAKYLSEMKQLTHLDVECNNI-NGGAKYLGELKELTYLNAKYNILGD-DVRYLSRLE 274
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
LT LN++ N ++ K + IS + LV+LN+ ++ I G + + +K L L + SC
Sbjct: 275 LLTDLNVANN-GISAKGAKFISEMNRLVNLNIGHNNIGKEGAKFISQMKKLTCLDI-SC 331
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 142/328 (43%), Gaps = 30/328 (9%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L N+ L + R RI L LMK + +LN+ N + K + L +L +L IS
Sbjct: 82 LQNIQSLTVNRRNRIIAFDCQLFNLMKDISTLNVSE-NTFENGHCKYIGQLKHLTNLDIS 140
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+ + D G+ YL+ L + + I +MI ++ +++LT LN+ + + +
Sbjct: 141 INLIGDEGVGYLRKLKQLTNLNISNNMIGEKGAQYI--GKMKQLTCLNINSNHIGSEGVK 198
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
L L L L++ C + + G + S++ L L++ N I +L L L LN
Sbjct: 199 FLKELKELRTLDMVYCYIGEVGAKYLSEMKQLTHLDVECNNINGGA-KYLGELKELTYLN 257
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
+GD+ +R+LS L L +N++ GIS +
Sbjct: 258 AKYNILGDD-------------------------VRYLSRLELLTDLNVANNGISAKGAK 292
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
++ ++ L +LN+ I G ++ + LT LD+ I D GA + K L SL
Sbjct: 293 FISEMNRLVNLNIGHNNIGKEGAKFISQMKKLTCLDISCNSIQDEGAKCISEMKQLTSLN 352
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
I + G +I +++ LT L + N
Sbjct: 353 INSNNINKKGANYIAEMNQLTYLKIRFN 380
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 30/283 (10%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G+ +LR L LT+L+ NN I +G + + L L++ G+ LK
Sbjct: 144 IGDEGVGYLRKLKQLTNLNIS-NNMIGEKGAQYIGKMKQLTCLNINSNHIGSEGVKFLKE 202
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L +L +L++ +C I + K LS + L L + C+ + + G YL
Sbjct: 203 LKELRTLDMVYC-YIGEVGAKYLSEMKQLTHLDVECNNI-NGGAKYL------------- 247
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
L++LT LN + + + LS L L LN+ +S G +
Sbjct: 248 -------------GELKELTYLNAK-YNILGDDVRYLSRLELLTDLNVANNGISAKGAKF 293
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
S++ L LN+G N I E + + L L++ I DEG ++ + L L +
Sbjct: 294 ISEMNRLVNLNIGHNNIGKEGAKFISQMKKLTCLDISCNSIQDEGAKCISEMKQLTSLNI 353
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
+ + G +++ + L + + F +G+ L L +L
Sbjct: 354 NSNNINKKGANYIAEMNQLTYLKIRFNIGDNGARNILKQLPNL 396
>gi|350417674|ref|XP_003491538.1| PREDICTED: F-box/LRR-repeat protein 14-like [Bombus impatiens]
Length = 485
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 140/304 (46%), Gaps = 74/304 (24%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ ++
Sbjct: 246 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------ES 288
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 289 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 348
Query: 185 LQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L + SC ++D G+AYL G ISS+ C I +H+
Sbjct: 349 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHIS---------------- 392
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
L +L L+L+ CQ+SD+G K +K L
Sbjct: 393 ---------QGLFNLKLLSLSACQISDEGICKIAKT-----------------------L 420
Query: 302 TNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
+LE+LN+ C + D+GL + + +LKC++L T++ ++GL + L L ++NL
Sbjct: 421 HDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLG 480
Query: 359 FTGI 362
+
Sbjct: 481 LWHV 484
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 156/308 (50%), Gaps = 34/308 (11%)
Query: 225 FLTSLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK 276
L + L LNL GC + A C + +L LNL+ C Q+SD + +
Sbjct: 176 VLKGVPNLEALNLSGCYNITDVGLINAFCQE----YATLIELNLSLCKQVSDISLGRIVQ 231
Query: 277 -IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGL------- 325
+ +L+ L LG IT+ L+ + L L+ L+L SC + D G+ +L G+
Sbjct: 232 YLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGG 291
Query: 326 -CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 381
L+ L L D Q + LRH+S GLT L+SINLSF I+D L+ LA +SSL+ LNL
Sbjct: 292 NLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNL 351
Query: 382 DA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+D G+A L + ++ LD+ F +I D ++ + NL+ L + ++D
Sbjct: 352 RSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDE 411
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ K K L L LN+ Q LTDK L I+ + L +++ +RI++ GL + L
Sbjct: 412 GICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKL 471
Query: 495 KNLRSLTL 502
L +L L
Sbjct: 472 PQLSTLNL 479
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 164/352 (46%), Gaps = 56/352 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL--KGLMKLES 159
RG+ + LS RR G+ NL L+L C I GL+N + L
Sbjct: 159 RGVKRVQVLSLRRGLG------DVLKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIE 212
Query: 160 LNIKWCNCITDSDM-KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ++D + + + L NL+ L++ C +T+ G
Sbjct: 213 LNLSLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNGG--------------------- 251
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALG--SLFYLNLNRCQLSD 268
L C+ +L+KL L+L C + A ++ SA G +L +L+L CQ
Sbjct: 252 -LLCI---AWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALEHLSLQDCQRLS 307
Query: 269 DGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT- 323
D + IG +LK +NL F ITD L HL +++L LNL SC I D G+ L
Sbjct: 308 DEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLAE 367
Query: 324 GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 380
G + L++S ++G L H+S GL NL+ ++LS ISD + K+A L L++LN
Sbjct: 368 GGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLN 427
Query: 381 L-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
+ ++TD GL + S+ L +DL+G RI+ +G + L +L +
Sbjct: 428 IGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 479
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 124/246 (50%), Gaps = 40/246 (16%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 346
LKG+ NLE+LNL C I D GL+N C NL C ++SD +G R +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIV 230
Query: 347 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 398
L NLE + L I++G L +A L LK L+L + Q++D G+A L +
Sbjct: 231 QYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAG 290
Query: 399 ---GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLT 449
L HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL
Sbjct: 291 GNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLR 347
Query: 450 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCK 506
LNL N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+
Sbjct: 348 ELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQ 407
Query: 507 VTANDI 512
++ I
Sbjct: 408 ISDEGI 413
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 63/272 (23%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC 141
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A G + LD+ C
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVSFC 380
Query: 142 TRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIA 198
+I LV++ +GL L+ L++ C + K L +L++L I CS++TD G
Sbjct: 381 DKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKG-- 438
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L+ S++ L ++L GC
Sbjct: 439 -----------------------LYTIAESMKHLKCIDLYGCT----------------- 458
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
++S +G E+ K+ L LNLG +
Sbjct: 459 ------RISTNGLERIMKLPQLSTLNLGLWHV 484
>gi|340728038|ref|XP_003402339.1| PREDICTED: f-box/LRR-repeat protein 14-like [Bombus terrestris]
Length = 485
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 140/304 (46%), Gaps = 74/304 (24%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ ++
Sbjct: 246 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------ES 288
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 289 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 348
Query: 185 LQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L + SC ++D G+AYL G ISS+ C I +H+
Sbjct: 349 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHIS---------------- 392
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
L +L L+L+ CQ+SD+G K +K L
Sbjct: 393 ---------QGLFNLKLLSLSACQISDEGICKIAKT-----------------------L 420
Query: 302 TNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS 358
+LE+LN+ C + D+GL + + +LKC++L T++ ++GL + L L ++NL
Sbjct: 421 HDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNLG 480
Query: 359 FTGI 362
+
Sbjct: 481 LWHV 484
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 156/308 (50%), Gaps = 34/308 (11%)
Query: 225 FLTSLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK 276
L + L LNL GC + A C + +L LNL+ C Q+SD + +
Sbjct: 176 VLKGVPNLEALNLSGCYNITDVGLINAFCQE----YATLIELNLSLCKQVSDISLGRIVQ 231
Query: 277 -IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSCG-IGDEGLVNLTGL------- 325
+ +L+ L LG IT+ L+ + L L+ L+L SC + D G+ +L G+
Sbjct: 232 YLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGG 291
Query: 326 -CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 381
L+ L L D Q + LRH+S GLT L+SINLSF I+D L+ LA +SSL+ LNL
Sbjct: 292 NLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNL 351
Query: 382 DA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 437
+ I+D G+A L + ++ LD+ F +I D ++ + NL+ L + ++D
Sbjct: 352 RSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDE 411
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 494
G+ K K L L LN+ Q LTDK L I+ + L +++ +RI++ GL + L
Sbjct: 412 GICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKL 471
Query: 495 KNLRSLTL 502
L +L L
Sbjct: 472 PQLSTLNL 479
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 164/352 (46%), Gaps = 56/352 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL--KGLMKLES 159
RG+ + LS RR G+ NL L+L C I GL+N + L
Sbjct: 159 RGVKRVQVLSLRRGLG------DVLKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIE 212
Query: 160 LNIKWCNCITDSDM-KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ++D + + + L NL+ L++ C +T+ G
Sbjct: 213 LNLSLCKQVSDISLGRIVQYLKNLEHLELGGCCNITNGG--------------------- 251
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALG--SLFYLNLNRCQLSD 268
L C+ +L+KL L+L C + A ++ SA G +L +L+L CQ
Sbjct: 252 -LLCI---AWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNLALEHLSLQDCQRLS 307
Query: 269 DGCEKFSKIG--SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT- 323
D + IG +LK +NL F ITD L HL +++L LNL SC I D G+ L
Sbjct: 308 DEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLAE 367
Query: 324 GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 380
G + L++S ++G L H+S GL NL+ ++LS ISD + K+A L L++LN
Sbjct: 368 GGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLN 427
Query: 381 L-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
+ ++TD GL + S+ L +DL+G RI+ +G + L +L +
Sbjct: 428 IGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 479
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 124/246 (50%), Gaps = 40/246 (16%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHL 346
LKG+ NLE+LNL C I D GL+N C NL C ++SD +G R +
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIV 230
Query: 347 SGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT----- 398
L NLE + L I++G L +A L LK L+L + Q++D G+A L +
Sbjct: 231 QYLKNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAG 290
Query: 399 ---GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLT 449
L HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL
Sbjct: 291 GNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLR 347
Query: 450 LLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCK 506
LNL N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+
Sbjct: 348 ELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQ 407
Query: 507 VTANDI 512
++ I
Sbjct: 408 ISDEGI 413
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 63/272 (23%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC 141
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A G + LD+ C
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVSFC 380
Query: 142 TRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIA 198
+I LV++ +GL L+ L++ C + K L +L++L I CS++TD G
Sbjct: 381 DKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKG-- 438
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
L+ S++ L ++L GC
Sbjct: 439 -----------------------LYTIAESMKHLKCIDLYGCT----------------- 458
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
++S +G E+ K+ L LNLG +
Sbjct: 459 ------RISTNGLERIMKLPQLSTLNLGLWHV 484
>gi|196229410|ref|ZP_03128275.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
Ellin428]
gi|196226642|gb|EDY21147.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
Ellin428]
Length = 299
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 11/222 (4%)
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
D+ G+ D + GL +LK L + +GL+ L+GL LE ++ + SD +R
Sbjct: 57 DNKGLTDADYRQIRGLDHLKMLGCG-AGLDDAGLKALAGLPALEQLSTNGMTASDEGVRT 115
Query: 370 LAGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRS 426
LA +L+S+ + T TGLAAL ++ L L + G+ D G A + +L+
Sbjct: 116 LAACKALRSIAFFHPGKSFTGTGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQIAHLKE 175
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN------CNLTDKTLELISGLTGLVSLNVSN 480
G T G++ ++ L L L + Q ++D T+ ++G+ L L++
Sbjct: 176 FRTWHAGATVEGIRKLQALKELKSLTIGQRLANKPPVMVSDDTVAAVAGMPSLEMLSLQE 235
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
+R+T L LK L NL+ LTL+ + I L+ ++LP
Sbjct: 236 ARLTLPALGKLKQLPNLKRLTLDGIDIPEAQIAELR-QELPK 276
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 96/240 (40%), Gaps = 43/240 (17%)
Query: 157 LESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
L+ L + C + D+ +K L+GL L+ L + +D G+ L C
Sbjct: 72 LDHLKMLGCGAGLDDAGLKALAGLPALEQLSTNGMTASDEGVRTLAA----------CKA 121
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKF 274
+ + H G T L +L+A+ +L L + + DDG
Sbjct: 122 LRSIAFFH--------------PGKSFTGTGLAALAAIPNLERLTVAGSTEFGDDGLAAV 167
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
++I LK T E + L+ L L+SL IG L N + +S
Sbjct: 168 AQIAHLKEFRTWHAGATVEGIRKLQALKELKSLT-----IGQR-------LANKPPVMVS 215
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
D V + ++G+ +LE ++L ++ +L KL L +LK L LD I + +A L
Sbjct: 216 DDTVAA-----VAGMPSLEMLSLQEARLTLPALGKLKQLPNLKRLTLDGIDIPEAQIAEL 270
>gi|17546519|ref|NP_519921.1| GALA protein [Ralstonia solanacearum GMI1000]
Length = 401
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 128/305 (41%), Gaps = 31/305 (10%)
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
I + I RL L L L++ GC + A L++ +L LN++R + DDG
Sbjct: 95 ITSAGIARLLAL--------PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDG 146
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ L LN+G N I+D L L L++ IGD G L G L
Sbjct: 147 AAALAANPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNK 206
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L+ D +G G R L+ L ++L + I G LA L SLN+ + G
Sbjct: 207 LDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAG 266
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
A L + LT LD+ I ++GA L L L + G+ +AG + + ++LT
Sbjct: 267 AALLAASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTA 326
Query: 451 LNLSQN-----------CNLTDKTLELISGLTG------------LVSLNVSNSRITSAG 487
L++ N N T TL+ + G L +LNV +RI AG
Sbjct: 327 LDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAG 386
Query: 488 LRHLK 492
+R L+
Sbjct: 387 MRALE 391
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 114/290 (39%), Gaps = 27/290 (9%)
Query: 191 KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL 250
+T +GIA L L + + C + L L S LT+LN+ + +L
Sbjct: 94 PITSAGIARLLALPLERLDVSGCGLDAESARL---LASHPTLTVLNISRNAIGDDGAAAL 150
Query: 251 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
+A L LN+ R +SD G L L++ N I D L G L L+
Sbjct: 151 AANPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAG 210
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN-------------- 356
CGIG EG L L L+L ++G G L+ L S+N
Sbjct: 211 DCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALL 270
Query: 357 ----------LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+ GI + R L ++L L++ I + G AL + T LT LD+
Sbjct: 271 AASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIG 330
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
RI D+GA L L +L+ + D G + D + L LN+ N
Sbjct: 331 SNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGAN 380
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 27/259 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G +
Sbjct: 155 KLTSLNVGR-NGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSA----------- 202
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
KL L+ C + +L+A +L L+L ++ G E +
Sbjct: 203 ---------------KLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALA 247
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
L LN+ N + L L L++ + GIG+ G L L L +++
Sbjct: 248 ANPRLTSLNVCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKLSVAN 307
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+ +G R L+ T L ++++ I D + LA +L +L+ A I D G AL
Sbjct: 308 NGIEEAGARALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALA 367
Query: 396 SLTGLTHLDLFGARITDSG 414
T L L++ RI ++G
Sbjct: 368 DNTRLATLNVGANRIGEAG 386
>gi|290992602|ref|XP_002678923.1| predicted protein [Naegleria gruberi]
gi|284092537|gb|EFC46179.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 89/162 (54%), Gaps = 7/162 (4%)
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+ ++ + L SL++ I G +++ + LT LD+ G RI D GA ++ K L+S
Sbjct: 122 INEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKS 181
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L I + G+K I ++ LT L++ +N ++ D+ + IS + L SL V+N+RI
Sbjct: 182 LNIYNDWIGIDGIKPISEMKQLTSLDIGRN-HIGDEVAKFISDMKQLTSLTVNNNRIGVE 240
Query: 487 GLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDLPN 522
G + + +K L+SL + + ++ A +++K+L S D+ +
Sbjct: 241 GAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISD 282
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 100/206 (48%), Gaps = 7/206 (3%)
Query: 217 IRLFCLHVFLTSLQKLT----LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
I+LF F++S+ + L N E P ++ ++ + L L+++ + +G +
Sbjct: 91 IKLFMNSRFMSSIVDVKFSEMLFNSEETP---KFINEMTKMKQLTSLDISYNLIYAEGAK 147
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
S++ L L++G N I D+ + L L+SLN+ + IG +G+ ++ + L L+
Sbjct: 148 SISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLNIYNDWIGIDGIKPISEMKQLTSLD 207
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
+ +G + +S + L S+ ++ I + ++ + LKSL ++ QI G
Sbjct: 208 IGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGAKFISEMKQLKSLGINNNQIYAEGAK 267
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYL 418
++ + LT LD+ +I GA ++
Sbjct: 268 FISEMKQLTSLDISDNQIYAEGAKFI 293
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
+T + L L++S + + G + +S + L S+++ I D + ++ L LKSLN+
Sbjct: 125 MTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLNI 184
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
I G+ ++ + LT LD+ I D A ++ + K L SL + + G K
Sbjct: 185 YNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGAKF 244
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 491
I ++ L L ++ N + + + IS + L SL++S+++I + G + +
Sbjct: 245 ISEMKQLKSLGINNN-QIYAEGAKFISEMKQLTSLDISDNQIYAEGAKFI 293
>gi|290974240|ref|XP_002669854.1| predicted protein [Naegleria gruberi]
gi|284083406|gb|EFC37110.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 17/228 (7%)
Query: 228 SLQKLTLLNLEGCPVTA--ACLDSLSALG-------------SLFYLNLNRCQLSDDGCE 272
SL++L L+ LE V A L+SLS +G L YLNLN ++ + C+
Sbjct: 107 SLKRLNLIGLEVSNVVARFGSLESLSLIGMGAEIGNSIGNLSRLTYLNLNASSVTSESCQ 166
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
K +K LNL N+I +E ++L L NL L L+ C I ++G+ +L+ + L L
Sbjct: 167 YIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILN 226
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
+S ++ G ++ L NL S L S S++ + L L SLNL I + G+
Sbjct: 227 VSKNRIEDDGFVNICKLKNLTS--LKAASCSVESIKNITNLIKLTSLNLGQNSIDNEGVK 284
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
+ LT L L L YL ++ L++ L+ VK
Sbjct: 285 IIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLDLRDNNLSFDNVK 332
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ L+ L L ++ S VT Y++ + + + + I CL +LT L+ LT+L
Sbjct: 144 IGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCL--YLTKLKNLTIL 201
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
LE C +S+ G E S+I +L +LN+ N I D+
Sbjct: 202 RLED------------------------CNISEKGVEHLSQIETLTILNVSKNRIEDDGF 237
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
V++ L NL SL SC + E + N+T L L L L + + G++ + LTNL+++
Sbjct: 238 VNICKLKNLTSLKAASCSV--ESIKNITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTL 295
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNL 381
L +++ L LSS++ L+L
Sbjct: 296 TLENNVFQPEAVQYLTKLSSMEVLDL 321
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 42/238 (17%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
NE +C + LD C +NL GL E+S+ ++
Sbjct: 83 NEFVSDCPYSFEEFVKY----LDECQFDSLKRLNLIGL------EVSNV---------VA 123
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+LES++L G G+ + LS L LNL+A +T + + +L+L
Sbjct: 124 RFGSLESLSLIGMGAEIGN--SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSD 181
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------C 457
+I + YL KNL L + +++ GV+H+ + +LT+LN+S+N C
Sbjct: 182 NKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNIC 241
Query: 458 NLTD-----------KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L + ++++ I+ L L SLN+ + I + G++ + L NL++LTLE+
Sbjct: 242 KLKNLTSLKAASCSVESIKNITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLEN 299
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
++ +L+ LT+L+L + +T Y++ + +++L + + + ++ L +LT+L
Sbjct: 143 SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILR 202
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
L ++CN+++K +E +S + L LNVS +RI G ++ LKNL SL SC V +
Sbjct: 203 L-EDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSVES 258
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+++LS + + + ++L NL L C IS+ G+EHL + LT L+ + N I
Sbjct: 176 NLNLSDNKIGNESCLYLTKLKNLTILRLEDC-NISEKGVEHLSQIETLTILNVSK-NRIE 233
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L NL L C+ + N+ L+KL SLN+ N I + +K + LT
Sbjct: 234 DDGFVNICKLKNLTSLKAASCSV--ESIKNITNLIKLTSLNLGQ-NSIDNEGVKIIGELT 290
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVI 209
NLK+L + + + YL LS V+
Sbjct: 291 NLKTLTLENNVFQPEAVQYLTKLSSMEVL 319
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L L+L G +++ A F +L SL + G G + G I +LS LT LNL+ + +
Sbjct: 107 SLKRLNLIGLEVSNVVAR----FGSLESLSLIGMG-AEIG-NSIGNLSRLTYLNLNAS-S 159
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+T ++ + I + +LN+S+++I + +L LKNL L LE C ++ ++ L
Sbjct: 160 VTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHL 216
>gi|332661885|ref|YP_004451355.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
gi|332337382|gb|AEE54482.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
Length = 1141
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 152/321 (47%), Gaps = 54/321 (16%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q+SD L LS L++LSF LDL T++
Sbjct: 191 QVSD-----LDALSALSNLSF----------------------LDLS-FTQVSDLSGLST 222
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLSISSVIFI 211
SD++ L L NL L++S ++V+D S +A+L LS + +
Sbjct: 223 LSNLSSLN----LRDTYSSDLRSLRPLINLSDLKLSSTEVSDLSVLAHLHNLSSLHLSYT 278
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
S + L++L L+ L+L V+ L +LSAL +L +LNL+ Q+SD
Sbjct: 279 QVSDL-------SALSALSNLSFLDLSDTQVSD--LSALSALYNLSFLNLSNTQISD--L 327
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ +L +++L E+TD L L+ L NL S+NL+ D L L+ L NL L
Sbjct: 328 SALRHLLNLSIIDLSSTELTD--LTTLRHLQNLNSINLNKTHASD--LSALSNLSNLSEL 383
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
LSDTQ +S L LS L NL S+NLS+T +S L LA L +L SL+L ++ D L
Sbjct: 384 YLSDTQ--ASDLSALSALFNLNSLNLSYTQVS--GLSALANLQNLSSLDLGDTEVFD--L 437
Query: 392 AALTSLTGLTHLDLFGARITD 412
+ L +L L+ LDL + D
Sbjct: 438 SPLANLQNLSSLDLSDTEVVD 458
>gi|406830657|ref|ZP_11090251.1| hypothetical protein SpalD1_03434 [Schlesneria paludicola DSM
18645]
Length = 254
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 93/174 (53%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
L+ L L +L+++ +++ G + K+ SL L L ++I+D L L+ L NL
Sbjct: 65 YLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLT 124
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+L++ GI +EG+ ++ L L+ L L T + GL L LT+L +NL + ++D
Sbjct: 125 TLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDD 184
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
+ L+ L+SL +L+L +I+D GLA+ L LT L + T +G L+
Sbjct: 185 AANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK 238
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 2/179 (1%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L +L +++S T I++ + ++ L+SL +L L QI+D GL+ L SL LT L +
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G I++ G + LR L + +T+ G+ +K L+ L+ LNL NL D
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIH-SNLNDDAAN 187
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
++S LT L +L++ + I+ GL L NL LT + K T + L+ + LPNL+
Sbjct: 188 VLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK-QALPNLM 245
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 82/159 (51%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
LK +L L++ I + G+ + L +L L LS +Q+ +GL L L NL ++++
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
GIS+ +R + L L+ L+L IT+ GL L LT L+ L+L + + D A
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANV 188
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L +L +L + ++D G+ L++LT+L +N
Sbjct: 189 LSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRN 227
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SG+ +T++G+ + ++L +L + QISD GL LR L NLT+L N I+
Sbjct: 78 LDVSGTTITNAGMPEIGKLTSLTALYLSKS-QISDAGLSELRSLKNLTTLHIV-GNGISN 135
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+GM++ L L L L R T GL LK L L LN+ N + D LS LT+
Sbjct: 136 EGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSN-LNDDAANVLSELTS 194
Query: 182 LKSLQISCSKVTDSGIAYLKGLS 204
L +L + ++++D G+A L+
Sbjct: 195 LTTLHLGRNEISDVGLASFNKLN 217
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 161 NIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
++ W + IT++ M + LT+L +L +S S+++D+G++ L+ L + + I+ + I
Sbjct: 74 DLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHIVGNGI 133
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
+ L +L +L+L +T L L L L LNL L+DD S+
Sbjct: 134 SNEGMRSI--GELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANVLSE 191
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNL 304
+ SL L+LG NEI+D L L NL
Sbjct: 192 LTSLTTLHLGRNEISDVGLASFNKLNNL 219
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 37/204 (18%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
VN KG K N K+ N +KP LT L +S + +T++G+ + L+
Sbjct: 53 VNFKGNKKF---NYKYLNL-----LKPFRDLT---WLDVSGTTITNAGMPEIGKLT---- 97
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
LT L L ++ A L L +L +L L++ +S+
Sbjct: 98 ----------------------SLTALYLSKSQISDAGLSELRSLKNLTTLHIVGNGISN 135
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G ++ L++L+LG IT+E L LK LT+L LNL + D+ L+ L +L
Sbjct: 136 EGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANVLSELTSL 195
Query: 329 KCLELSDTQVGSSGLRHLSGLTNL 352
L L ++ GL + L NL
Sbjct: 196 TTLHLGRNEISDVGLASFNKLNNL 219
>gi|290987030|ref|XP_002676226.1| predicted protein [Naegleria gruberi]
gi|284089827|gb|EFC43482.1| predicted protein [Naegleria gruberi]
Length = 298
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 12/251 (4%)
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
K+ LK+ N G N I+ T L L+ +C + D+GL +L + L L L
Sbjct: 56 KVRDLKICNEGVNWISQS--------TQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPS 106
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++ + + LT L S+N+ GI+D + L+ L L++ QI + +++
Sbjct: 107 CPKYANKVELIGQLTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESIS 166
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
LT L L++ I D GA + LR L++ +TDAGV I L L L++S
Sbjct: 167 QLTNLIILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISN 226
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
N ++ E ISGL L LN+ + I G + L LRSL + +++ IK +
Sbjct: 227 N-EISKTGAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSI 285
Query: 516 QSRDLPNLVSF 526
R+L L S
Sbjct: 286 --RNLRKLTSL 294
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 142/311 (45%), Gaps = 27/311 (8%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI--SCSKVTDSGIAYLKGLSISSVIFILCS 214
LE+L + I D +K +S L NL+ L I C T G+ + S
Sbjct: 1 LENLTFLEISRIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESI-------------S 47
Query: 215 MIIRLFCLHV-----------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
+ +L CL V +++ +LT L+ C + L+SL + L L L
Sbjct: 48 EMPKLTCLKVRDLKICNEGVNWISQSTQLTDLDFTTCTLDQG-LESLCEMKRLTSLWLPS 106
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
C + E ++ L LN+ I D+ VH+K LT L L++ I E + +++
Sbjct: 107 CPKYANKVELIGQLTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESIS 166
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L NL L +S +G G + L+ L + + I+D + ++ L L L++
Sbjct: 167 QLTNLIILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISN 226
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+I+ TG +++ L LT+L++ I D G ++ + LRSL G++ G+K I+
Sbjct: 227 NEISKTGAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIR 286
Query: 444 DLSSLTLLNLS 454
+L LT L+LS
Sbjct: 287 NLRKLTSLSLS 297
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 34/296 (11%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
S + D GL ++ + NL+ L+ + C + GLE + + LT L R + I +G+
Sbjct: 10 SRIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVR-DLKICNEGVN 68
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L LD CT + GL +L + +L SL + C + ++ + LT L SL
Sbjct: 69 WISQSTQLTDLDFTTCT-LDQGLESLCEMKRLTSLWLPSCPKYANK-VELIGQLTQLTSL 126
Query: 186 QISCSKVTDSGIAYLKGL--------SISSVIFILCSMIIRL-----------------F 220
I + D ++K L S++ ++F I +L
Sbjct: 127 NICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMSYCNIGDDGA 186
Query: 221 CLHVFLTSLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
CL L+ L++L +L NL +T A + S+S L L L+++ ++S G E S + +
Sbjct: 187 CLIGELSQLRELKVLKNL----ITDAGVISISQLKHLIKLDISNNEISKTGAESISGLRN 242
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
L LN+G+N I DE + L+ L SL+ D GI EG+ ++ L L L LS+
Sbjct: 243 LTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLTSLSLSN 298
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGLTGLVSLNVS 479
+NL LEI G D G+K+I +L +L +LN+ C T LE IS + L L V
Sbjct: 1 LENLTFLEISRIG--DMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVR 58
Query: 480 NSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIKRLQSRDLPNLVSF 526
+ +I + G+ + L L +C + ++KRL S LP+ +
Sbjct: 59 DLKICNEGVNWISQSTQLTDLDFTTCTLDQGLESLCEMKRLTSLWLPSCPKY 110
>gi|320168649|gb|EFW45548.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 977
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 160/382 (41%), Gaps = 32/382 (8%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIK 163
SN T LS + N IT+ + AF GL L+ L L + T I GL L L +K
Sbjct: 58 SNTTHLSLQSNQ-ITSISVNAFTGLTALIWLYLTDNQITSISANA--FTGLSALTYLVLK 114
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
N I+ +GL+ LK + +S +++ D A GL S +
Sbjct: 115 E-NEISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMSTL-------------- 159
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+L+ P TA L+AL L YL+ N +S F+ +L L
Sbjct: 160 -------RLSRNQFNSIPSTA-ITTGLTALKEL-YLDANN--ISSISTAAFTGFPALTYL 208
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
L N ITD LT L L L + I GL L L+LS ++ S
Sbjct: 209 YLADNPITDIPANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSA 268
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+GLT L + L +S L++L+ L L + Q T+ AA T L L L
Sbjct: 269 SVFTGLTALSILYLQSNQLSSIPASSFTDLAALQHLYLSSNQFTNLPAAAFTGLDALIVL 328
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
L G +T + L + LR+L++ +T L++LT+L L N + +
Sbjct: 329 WLSGNPLTSVPTSALTSLSALRNLDLSSTKITSISANAFAGLNALTVLALHYN-PIASIS 387
Query: 464 LELISGLTGLVSLNVSNSRITS 485
+GLT L +L++SN+ +T+
Sbjct: 388 GSAFTGLTALTALHLSNTPLTT 409
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 2/285 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
T L L L L +T+ ++ + L +L YL L ++S F+ + +LK ++L
Sbjct: 78 FTGLTALIWLYLTDNQITSISANAFTGLSALTYLVLKENEISSISANAFTGLSALKEVDL 137
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLR 344
N I D GL + +L L TGL LK L L + S
Sbjct: 138 SNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTAITTGLTALKELYLDANNISSISTA 197
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+G L + L+ I+D A L+ L+ L L QI+ A L+ L +LD
Sbjct: 198 AFTGFPALTYLYLADNPITDIPANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLD 257
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L +I+ A+ L L + L+ DL++L L LS N T+
Sbjct: 258 LSMNKISSLSASVFTGLTALSILYLQSNQLSSIPASSFTDLAALQHLYLSSN-QFTNLPA 316
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+GL L+ L +S + +TS L L LR+L L S K+T+
Sbjct: 317 AAFTGLDALIVLWLSGNPLTSVPTSALTSLSALRNLDLSSTKITS 361
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 17/215 (7%)
Query: 309 LDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+D+CG G G+ + +G +CN + L + + S HLS +N I+
Sbjct: 26 VDACGTG--GVCDCSGTTVICNTESLTTIPSGI-PSNTTHLSLQSN---------QITSI 73
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
S+ GL++L L L QIT A T L+ LT+L L I+ A L+
Sbjct: 74 SVNAFTGLTALIWLYLTDNQITSISANAFTGLSALTYLVLKENEISSISANAFTGLSALK 133
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
+++ + D L ++ L LS+N + + + +GLT L L + + I+S
Sbjct: 134 EVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTAITTGLTALKELYLDANNISS 193
Query: 486 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 520
L L L +T DI DL
Sbjct: 194 ISTAAFTGFPALTYLYLADNPIT--DIPANTFADL 226
>gi|430746594|ref|YP_007205723.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
gi|430018314|gb|AGA30028.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
Length = 170
Score = 75.9 bits (185), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
LK L + +T+VG +G+ L+ + ++L T I+D L+ L G+ SL L+L A IT
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
D GLA L + L LDL +I+D AG++H+K L
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISD------------------------AGIEHLKGLKG 118
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
L ++ N+TD+++ +I G L ++N S+IT AG L+ +
Sbjct: 119 LDIV----ETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161
Score = 71.6 bits (174), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L+ L +++ +GD G+ L + L+L T++ +GL+ L G+ +L ++L TGI+
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
D L LAG+ L+ L+L +I+D G+ L L G LD+ +TD + F+
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKG---LDIVETNVTDRSIPIIGGFER 139
Query: 424 LRSLEICGGGLTDAGVKHIKDL 445
L ++ G +T+AG + ++ +
Sbjct: 140 LEAINPRGSKITEAGEEQLRKM 161
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
NL+GCP LSA+ L L + ++ D G + + + L+L +ITD L
Sbjct: 6 NLQGCPNANGI--RLSAV-VLKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGL 62
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
LKG+ +L L+L + GI D GL +L G+ L+ L+L T++ +G+ HL GL L+ +
Sbjct: 63 KPLKGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIV 122
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
T ++D S+ + G L+++N +IT+ G L + L LD+
Sbjct: 123 E---TNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM--LPKLDI 167
Score = 62.0 bits (149), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 25/122 (20%)
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
LK L ++ ++ D G+A L S G+ LDL G +ITD+G L+ K+L L + G+T
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
DAG+ H+ +G+ L L++ ++I+ AG+ HLK LK
Sbjct: 83 DAGLAHL-------------------------AGMDRLERLDLGYTKISDAGIEHLKGLK 117
Query: 496 NL 497
L
Sbjct: 118 GL 119
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+ + V D+G+ L + LD + +I+D GL+ L+G+ +L LS R IT G
Sbjct: 28 IENTRVGDAGMAQLASHPGIAELDLH-GTKITDAGLKPLKGMKSLVHLSLRAT-GITDAG 85
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ AG+ L +LDL G+ +LKGL L+ + +TD + + G L+
Sbjct: 86 LAHLAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIVETN----VTDRSIPIIGGFERLE 141
Query: 184 SLQISCSKVTDSGIAYLKGL 203
++ SK+T++G L+ +
Sbjct: 142 AINPRGSKITEAGEEQLRKM 161
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L +E V A + L++ + L+L+ +++D G + + SL L+L IT
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
D L HL G+ LE L+L I D G+ +L G LK L++ +T V + + G
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIVETNVTDRSIPIIGGFER 139
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
LE+IN + I++ +L + L L++D
Sbjct: 140 LEAINPRGSKITEAGEEQLRKM--LPKLDID 168
Score = 47.0 bits (110), Expect = 0.024, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L S + L+L G +T A L L + SL +L+L ++D G + + L+ L+L
Sbjct: 41 LASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDL 100
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G+ +I+D + HLKG L+ L++ + D + + G L+ + +++ +G
Sbjct: 101 GYTKISDAGIEHLKG---LKGLDIVETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQ 157
Query: 346 L 346
L
Sbjct: 158 L 158
Score = 45.1 bits (105), Expect = 0.091, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-------SNLTS 110
SL+ + L + +TD+GL HL L+ LD + +ISD G+EHL+GL +N+T
Sbjct: 70 SLVHLSLRATGITDAGLAHLAGMDRLERLDLGY-TKISDAGIEHLKGLKGLDIVETNVTD 128
Query: 111 LS------FRRNNAITAQGMK 125
S F R AI +G K
Sbjct: 129 RSIPIIGGFERLEAINPRGSK 149
Score = 40.4 bits (93), Expect = 2.1, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 25/117 (21%)
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
L L + R+ D+G A L + + L++ G +TDAG+K +K
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLK---------------- 66
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
G+ LV L++ + IT AGL HL + L L L K++ I+ L+
Sbjct: 67 ---------GMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLK 114
>gi|290980890|ref|XP_002673164.1| predicted protein [Naegleria gruberi]
gi|284086746|gb|EFC40420.1| predicted protein [Naegleria gruberi]
Length = 287
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 131/274 (47%), Gaps = 4/274 (1%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+ L +LT+LN+ + S+S L L L + Q+ + G S++ L L+
Sbjct: 12 LIGKLSQLTILNISNNQIGDLGAQSISELKLLKELFADNNQIGNTGVSFISQLKQLLKLS 71
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
L N +E + + + L L++ + I ++G + + L+ L +S TQ+GS G +
Sbjct: 72 LMGNYFDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAK 131
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+SGL NL ++N+ ++ I + + G+ L L + +I + L LT L
Sbjct: 132 AISGLPNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLV 191
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT- 463
+ G I D GA Y+ K L+ L I G + G ++I L LT L++S CN D
Sbjct: 192 IEGNNIGDEGAKYISEAK-LKKLVISNGRIGGEGAQYIAKLHQLTNLDIS--CNNVDTAG 248
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
IS L L L++S ++I S G R +K + L
Sbjct: 249 ARSISKLPNLTILDISVNKIGSGGARLIKGMTQL 282
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 124/258 (48%), Gaps = 2/258 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+ L L LN++ Q+ D G + S++ LK L N+I + + + L L L+L
Sbjct: 13 IGKLSQLTILNISNNQIGDLGAQSISELKLLKELFADNNQIGNTGVSFISQLKQLLKLSL 72
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+EG+ +++ + L L++ ++ G +++ + L + +S T I +
Sbjct: 73 MGNYFDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKA 132
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
++GL +L +LN+ QI G + + LT L + +RI A + K+L L I
Sbjct: 133 ISGLPNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVI 192
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
G + D G K+I + + L L +S N + + + I+ L L +L++S + + +AG R
Sbjct: 193 EGNNIGDEGAKYISE-AKLKKLVIS-NGRIGGEGAQYIAKLHQLTNLDISCNNVDTAGAR 250
Query: 490 HLKPLKNLRSLTLESCKV 507
+ L NL L + K+
Sbjct: 251 SISKLPNLTILDISVNKI 268
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 23/207 (11%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
++G SK+ L L++G N+I ++ ++ + L L + IG EG ++GL
Sbjct: 77 FDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAISGL 136
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINL--SFTGISD----GSLRKLAGL------ 373
NL L + +Q+G G +++ G+ L + + S G+ G L+ L L
Sbjct: 137 PNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGNN 196
Query: 374 -----------SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
+ LK L + +I G + L LT+LD+ + +GA +
Sbjct: 197 IGDEGAKYISEAKLKKLVISNGRIGGEGAQYIAKLHQLTNLDISCNNVDTAGARSISKLP 256
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLT 449
NL L+I + G + IK ++ LT
Sbjct: 257 NLTILDISVNKIGSGGARLIKGMTQLT 283
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I K +SGL NL +L I S++ G Y+ C M
Sbjct: 125 IGSEGAKAISGLPNLTNLNIGYSQIGIEGAKYV------------CGM------------ 160
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+LT L + + + L L +L + + D+G + S+ LK L +
Sbjct: 161 --HQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGNNIGDEGAKYISE-AKLKKLVISN 217
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
I E ++ L L +L++ + G +++ L NL L++S ++GS G R +
Sbjct: 218 GRIGGEGAQYIAKLHQLTNLDISCNNVDTAGARSISKLPNLTILDISVNKIGSGGARLIK 277
Query: 348 GLTNLESI 355
G+T L +
Sbjct: 278 GMTQLTKV 285
>gi|84043404|ref|XP_951492.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348240|gb|AAQ15567.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62358736|gb|AAX79191.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1394
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 136/588 (23%), Positives = 236/588 (40%), Gaps = 139/588 (23%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG V D+ L L DC +L+ L+ ++CIQ++D +E L RG+
Sbjct: 300 LDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINPLSNATAIEELNLNGCRRITRGI 359
Query: 106 SNLTSLSFRR----------------------------NNAITAQGMKAFAGLINLVKLD 137
+ +L R +N M + ++ L +L+
Sbjct: 360 GVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELN 419
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKS 184
+++C I G+ +L L L LNIK + + +M+ ++GL ++++
Sbjct: 420 IQKCADIISGVGSLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLIDVEA 479
Query: 185 LQ--ISCSKVT-------DSGI------AYLKGLSISSV--------IFILCSMIIRLFC 221
L ++ K++ D+GI LK L +S L ++ L
Sbjct: 480 LANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNL 539
Query: 222 LHVF-------LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
H + ++SL+ L LNL C A +++ L L L+ ++D F
Sbjct: 540 SHCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRNISHF 599
Query: 275 SKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTGLC--NL 328
SK +L L+L F N++ D + L +T LE LNLDSC +GL L LC N+
Sbjct: 600 SKCKNLVTLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNI 657
Query: 329 KCLELSDTQVGSSG------------------LRHLSGLTNLESINLSFTGISDGSLRKL 370
K ++L D+ + S G + LS L LE +NL + + L
Sbjct: 658 KGVQLEDSVIVSLGNGGSLVKVSLDDCAGFGDVTPLSNLVTLEELNLHYCDKVTSGMGTL 717
Query: 371 AGLSSLKSLNLDARQITD------------------------TGLAALTSLTGLTHLDLF 406
L L+ L+L Q+ + T ++++ SLT L L++
Sbjct: 718 GRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKITSISSIASLTALEELNID 777
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
+ SG LR + + D ++++ + SL LNL+ ++TD T
Sbjct: 778 NSCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITDVT--A 835
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
+S +T L LN+ G+ L L L+++ C + +D ++
Sbjct: 836 LSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDAQQ 883
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 185/463 (39%), Gaps = 89/463 (19%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTDIDDSCIGEISA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFIL 212
KL L++ CN ITD+ P+S L+ L+ L + SC +T GI L
Sbjct: 247 CAKLSKLSVSECNNITDA--TPISQLSALEELNLNSCYHIT-KGIGTL------------ 291
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD--- 268
M++RL +L+L G PV CL L GSL LN++ C QL+D
Sbjct: 292 -GMLLRL-------------RILDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTDINP 337
Query: 269 ------------DGCEKFSK-------IGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+GC + ++ + L+VL++ +++ L + L ++L
Sbjct: 338 LSNATAIEELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSL 397
Query: 310 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
D+C G GD L L+ + L+ L + SG+ L L L +N+ IS
Sbjct: 398 DNCAGFGDMTL--LSSIVTLEELNIQKCADIISGVGSLGTLPYLRVLNIKEAHISSLDFT 455
Query: 369 KLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
+ SL LN+++ TGL AL ++ L L L G D+G L N L+
Sbjct: 456 GIGASKSLLQLNMESI----TGLIDVEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLK 511
Query: 426 SLEICGGGLTD-----------------------AGVKHIKDLSSLTLLNLSQNCNLTDK 462
L++ G + V HI L +L LNLS NC +
Sbjct: 512 MLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVSHISSLEALNELNLS-NCFGINA 570
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
E I L L +SN+ IT + H KNL +L L C
Sbjct: 571 GWEAIEKLQQLHVAILSNTHITDRNISHFSKCKNLVTLDLSFC 613
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 198/442 (44%), Gaps = 30/442 (6%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
H+ L L+ + C I + G E + L L ++ N IT + + F+ NLV
Sbjct: 550 HISSLEALNELNLSNCFGI-NAGWEAIEKLQQL-HVAILSNTHITDRNISHFSKCKNLVT 607
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL C ++ + L + LE LN+ C+ I + L L L L I ++ DS
Sbjct: 608 LDLSFCNKLLD-VTALSNITTLEELNLDSCSNIRKG-LSVLGELPRLCVLNIKGVQLEDS 665
Query: 196 GIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
I L G S+ V C+ F L++L L LNL C + + +L L
Sbjct: 666 VIVSLGNGGSLVKVSLDDCAG----FGDVTPLSNLVTLEELNLHYCDKVTSGMGTLGRLP 721
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLD- 310
L L+L R Q+ ++ E S+ +++L + +IT + + LT LE LN+D
Sbjct: 722 QLRVLDLGRTQVDNNSLENICT-SSIPLVSLNLSHCKKITS--ISSIASLTALEELNIDN 778
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRK 369
SC + G L L+ LS+T++ +R++S +L ++NL+F I+D +
Sbjct: 779 SCNV-TSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNLAFCKDITD--VTA 835
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLR- 425
L+ ++ L+ LNLD G+ L +L L + + DS A + L N K+L
Sbjct: 836 LSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDAQQCSILWNSKSLVK 895
Query: 426 -SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
+LE G ++ + +I L L L + + C + S L L LN+ +
Sbjct: 896 LNLERSMGFISVKALSNIATLEELVLGHARKVCCIPS-----FSCLPRLRVLNLKYTDFN 950
Query: 485 SAGLRHLKPLKNLRSLTLESCK 506
+++ K+L+SL L CK
Sbjct: 951 DDVTKNISESKSLQSLNLSHCK 972
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 15/276 (5%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
LS + SL L+L C + G K+ LK L+LG ++I++ L ++ ++ SLNL
Sbjct: 1122 LSNITSLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFLSRSITSLNL 1181
Query: 310 DSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNLESINLSFTGIS--- 363
DS L +++ + NL LE L +SG + LS L L +NL T ++
Sbjct: 1182 DS----SWELTDISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLESTRVTTRY 1237
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
DG ++ SL +LNL+ +TD A ++ L L + + G + L
Sbjct: 1238 DGYY--ISRCKSLVTLNLELCDMTDASYIA--NIKTLEELHIGKCKELTQGFSALFTLPR 1293
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSR 482
LR L + +TD ++ I+ ++ LNLS L D T L I + L ++R
Sbjct: 1294 LRILNLICSLITDEDLREIQPPHTIEELNLSYCVELNDITPLGRIKSIKKLHLRQSHDAR 1353
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
++ G R L L L + L++ V+++ ++ L R
Sbjct: 1354 RSTEGFRSLLELPCLSWVDLKNASVSSDILRELGKR 1389
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 127/338 (37%), Gaps = 73/338 (21%)
Query: 33 LQDLCLGQYPGVN-DKWMDVIASQGSSLLSVDLSG----SDVTDSGLIHLKDCSNLQSLD 87
L LC+ GV + + V G SL+ V L DVT L + L+ L+
Sbjct: 649 LPRLCVLNIKGVQLEDSVIVSLGNGGSLVKVSLDDCAGFGDVTP-----LSNLVTLEELN 703
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
++C +++ G+ L L L L R I LV L+L C +I
Sbjct: 704 LHYCDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCKKI-TS 761
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-SIS 206
+ ++ L LE LNI +C S L L+ +S +++ D I Y+ S++
Sbjct: 762 ISSIASLTALEELNID-NSCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLN 820
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLL---NLEGCPVTAACLDSLSALGSLFYLNLNR 263
++ C I + T+L K+T+L NL+ CP +++L L L++
Sbjct: 821 TLNLAFCKDITDV-------TALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKE 873
Query: 264 CQLSDDGCEK-------------------------------------------------F 274
C + D ++ F
Sbjct: 874 CYMGDSDAQQCSILWNSKSLVKLNLERSMGFISVKALSNIATLEELVLGHARKVCCIPSF 933
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
S + L+VLNL + + D+ ++ +L+SLNL C
Sbjct: 934 SCLPRLRVLNLKYTDFNDDVTKNISESKSLQSLNLSHC 971
>gi|242067197|ref|XP_002448875.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
gi|241934718|gb|EES07863.1| hypothetical protein SORBIDRAFT_05g000740 [Sorghum bicolor]
Length = 691
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 190/422 (45%), Gaps = 43/422 (10%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L GV+D + ++A + L S+DLS + +T + NLQ L CI
Sbjct: 202 LRELSLKWCLGVSDLGIQLLALKCRKLTSLDLSYTMITKDSFPPIMKLPNLQELTLVGCI 261
Query: 93 QISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
I D L L+ +L L IT G+ + L+ NL +LDL C + +V
Sbjct: 262 GIDDDALGSLQKECSKSLQVLDLSHCQNITDVGVSSILKLVPNLFELDLSYCCPVTPSMV 321
Query: 150 -NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLSIS 206
+ + + KL +L ++ C + D + +LK L +S CS +TD+ ++ + L
Sbjct: 322 RSFQKIPKLRTLKLEGCKFMVDGLKAIGTSCVSLKELNLSKCSGMTDTEFSFAMSRLKNL 381
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLN 262
+ I C I L +S L L +E C ++ +L +G L L+L
Sbjct: 382 LKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRVSS--GALQLIGKHCSHLEQLDLT 439
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSC-GIGDEGL 319
L D+G + S+ G L L +G +I+DE L H+ + NL ++L C G+ D+G+
Sbjct: 440 DSDLDDEGLKALSRCGKLSSLKIGICLKISDEGLTHIGRSCPNLRDIDLYRCGGLSDDGI 499
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKS 378
+ + C + LESINLS+ T I+D SL L+ + L +
Sbjct: 500 IPIAQGCPM-----------------------LESINLSYCTEITDRSLISLSKCTKLNT 536
Query: 379 LNLDA-RQITDTGLAALT-SLTGLTHLDLFGA-RITDSGAAYLRNFKN-LRSLEICGGGL 434
L + IT TGL+ + L+ LD+ + D G YL F + LR + + +
Sbjct: 537 LEIRGCPMITSTGLSEIAMGCRLLSKLDIKKCFEVNDVGMLYLSQFSHSLREINLSYCSV 596
Query: 435 TD 436
TD
Sbjct: 597 TD 598
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 199/457 (43%), Gaps = 52/457 (11%)
Query: 59 LLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +VDLS S +G+ L C L LD + + + D + L LS R
Sbjct: 125 LRAVDLSRSRGFGSAGVAALAASCPGLADLDLSNGVDLGDAAAAEVARAKGLRRLSLARW 184
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDM 173
+T G+ A G + L +L L+ C + + L L KL SL++ + IT
Sbjct: 185 KPLTDMGLGCVAVGCMELRELSLKWCLGVSDLGIQLLALKCRKLTSLDLSY-TMITKDSF 243
Query: 174 KPLSGLTNLKSLQ-ISCSKVTDSGIAYL-KGLSISSVIFIL--CSMIIRLFCLHVFLTSL 229
P+ L NL+ L + C + D + L K S S + L C I V ++S+
Sbjct: 244 PPIMKLPNLQELTLVGCIGIDDDALGSLQKECSKSLQVLDLSHCQNIT-----DVGVSSI 298
Query: 230 QKLT--LLNLE---GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVL 283
KL L L+ CPVT + + S + L L L C+ DG + + SLK L
Sbjct: 299 LKLVPNLFELDLSYCCPVTPSMVRSFQKIPKLRTLKLEGCKFMVDGLKAIGTSCVSLKEL 358
Query: 284 NLG-FNEITD-ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQVG 339
NL + +TD E + L NL L++ C I D L +T C +L L +
Sbjct: 359 NLSKCSGMTDTEFSFAMSRLKNLLKLDITCCRNITDVSLAAMTSSCTSLISLRMESCSRV 418
Query: 340 SSGLRHLSG--LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
SSG L G ++LE ++L+ + + D L+ L+ L SL + G+ S
Sbjct: 419 SSGALQLIGKHCSHLEQLDLTDSDLDDEGLKALSRCGKLSSLKI--------GICLKISD 470
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQ 455
GLTH+ R+ NLR +++ GGL+D G+ I + L +NLS
Sbjct: 471 EGLTHIG--------------RSCPNLRDIDLYRCGGLSDDGIIPIAQGCPMLESINLSY 516
Query: 456 NCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHL 491
+TD++L +S T L +L + ITS GL +
Sbjct: 517 CTEITDRSLISLSKCTKLNTLEIRGCPMITSTGLSEI 553
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GL 130
GL L C L SL C++ISD GL H+ R NL + R ++ G+ A G
Sbjct: 447 GLKALSRCGKLSSLKIGICLKISDEGLTHIGRSCPNLRDIDLYRCGGLSDDGIIPIAQGC 506
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI- 187
L ++L CT I L++L KL +L I+ C IT + + ++ G L L I
Sbjct: 507 PMLESINLSYCTEITDRSLISLSKCTKLNTLEIRGCPMITSTGLSEIAMGCRLLSKLDIK 566
Query: 188 SCSKVTDSGIAYLKGLSIS--SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
C +V D G+ YL S S + CS+ ++ LQ +T+++L G
Sbjct: 567 KCFEVNDVGMLYLSQFSHSLREINLSYCSVTDIGLLSLSSISGLQNMTIVHLAG 620
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 16/262 (6%)
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN--LKCLE 332
K L L+L + IT + + L NL+ L L C GI D+ L +L C+ L+ L+
Sbjct: 224 KCRKLTSLDLSYTMITKDSFPPIMKLPNLQELTLVGCIGIDDDALGSLQKECSKSLQVLD 283
Query: 333 LSDTQ----VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQIT 387
LS Q VG S + L + NL ++LS+ ++ +R + L++L L+ +
Sbjct: 284 LSHCQNITDVGVSSILKL--VPNLFELDLSYCCPVTPSMVRSFQKIPKLRTLKLEGCKFM 341
Query: 388 DTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAY-LRNFKNLRSLEI-CGGGLTDAGVKHI- 442
GL A+ TS L L+L +TD+ ++ + KNL L+I C +TD + +
Sbjct: 342 VDGLKAIGTSCVSLKELNLSKCSGMTDTEFSFAMSRLKNLLKLDITCCRNITDVSLAAMT 401
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+SL L + ++ L+LI + L L++++S + GL+ L L SL
Sbjct: 402 SSCTSLISLRMESCSRVSSGALQLIGKHCSHLEQLDLTDSDLDDEGLKALSRCGKLSSLK 461
Query: 502 LESCKVTANDIKRLQSRDLPNL 523
+ C +++ R PNL
Sbjct: 462 IGICLKISDEGLTHIGRSCPNL 483
>gi|344248327|gb|EGW04431.1| Insulin-like growth factor-binding protein complex acid labile
chain [Cricetulus griseus]
Length = 416
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 150/335 (44%), Gaps = 15/335 (4%)
Query: 176 LSGLTNLKSLQISCSKVTD------SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
GL NL+ L ++ +K+ G+ L+ L +S L S+ +F + L L
Sbjct: 3 FQGLGNLRELVLAGNKLAYLQPSLFCGLGELRELDLSRNA--LRSVKANVF---IHLPRL 57
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
QKL L + VTA + + +L +L+L+ +++ + F + L VL L N
Sbjct: 58 QKLYL---DRNFVTAVAPGAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNA 114
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
IT K L LE L L I G GL L+ L L+D Q+ + SGL
Sbjct: 115 ITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKMGAFSGL 174
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
N+ +NLS + + R GLS L SL+L+ + L T L+GL L L G
Sbjct: 175 FNVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEHSCLGRIRLHTFTGLSGLRRLFLRGNS 234
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I+ + L L L++ LT + + L L L LS N L+ + +++S
Sbjct: 235 ISITEEQSLAGLSELLELDLTANQLTHLPRRLFQGLGQLEYLLLSNN-RLSALSEDVLSP 293
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L + L++S++R+ + PL LR L+L +
Sbjct: 294 LQRVFWLDISHNRLEALSEGLFSPLGRLRYLSLRN 328
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 161/421 (38%), Gaps = 57/421 (13%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-----LMK 156
+GL NL L N Q F GL L +LDL R L ++K L +
Sbjct: 3 FQGLGNLRELVLAGNKLAYLQP-SLFCGLGELRELDLSR-----NALRSVKANVFIHLPR 56
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
L+ L + N +T G+ L+ L +S ++V GL + +L +
Sbjct: 57 LQKLYLD-RNFVTAVAPGAFLGMKALRWLDLSHNRVA--------GLLEDTFPGLLGLHV 107
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
+RL H +TSL+ T +L L L L ++ G + F
Sbjct: 108 LRL--AHNAITSLRPRTFKDLH----------------FLEELQLGHNRIRQLGEKTFEG 149
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
+G L+VL L N+I + + GL N+ +NL + + GL L L L +
Sbjct: 150 LGQLEVLTLNDNQIHEVKMGAFSGLFNVAVMNLSGNCLRNLPERVFQGLSKLHSLHLEHS 209
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+G L +GL+ L + L IS + LAGLS L L+L A Q+T
Sbjct: 210 CLGRIRLHTFTGLSGLRRLFLRGNSISITEEQSLAGLSELLELDLTANQLTHLPRRLFQG 269
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L L +L L R++ L + + L+I L L L L+L N
Sbjct: 270 LGQLEYLLLSNNRLSALSEDVLSPLQRVFWLDISHNRLEALSEGLFSPLGRLRYLSLRNN 329
Query: 457 CNLTDKTLELISGLTGLVSL----NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
+L+ S GL L N + R PLK LR L++ + +
Sbjct: 330 ------SLQTFSPQPGLERLWLDANPWDCRC---------PLKALRDFALQNPSIVPRFV 374
Query: 513 K 513
+
Sbjct: 375 Q 375
>gi|354476331|ref|XP_003500378.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cricetulus griseus]
Length = 340
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 148/272 (54%), Gaps = 25/272 (9%)
Query: 265 QLSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLV 320
Q++D + ++ + L+VL LG + IT+ L+ + GL L+SLNL SC + D G+
Sbjct: 72 QITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIG 131
Query: 321 NLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRK 369
+L G+ L+ L L D Q + L+H+S GLT L +NLSF GISD L
Sbjct: 132 HLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLH 191
Query: 370 LAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLR 425
L+ + SL+ D I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+
Sbjct: 192 LSHMGSLRLPTCD--NISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLK 248
Query: 426 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SR 482
SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +R
Sbjct: 249 SLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTR 308
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
IT GL + L L+ L L ++T ++ R
Sbjct: 309 ITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 340
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 132/270 (48%), Gaps = 28/270 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 73 ITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGH 132
Query: 102 LRGLSN--------LTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNL 151
L G++ L L+ + +T +K + GL L L+L C I GL++L
Sbjct: 133 LAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL 192
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAY----LKGLSI 205
+ SL + C+ I+D+ + L+ G L L +S C KV D +AY L GL
Sbjct: 193 S---HMGSLRLPTCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKS 249
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSA-LGSLFYLNLNR 263
S LCS I ++ + + L LN+ C +T L+ ++ L L ++L
Sbjct: 250 LS----LCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYG 305
Query: 264 C-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
C +++ G E+ +++ LKVLNLG ++TD
Sbjct: 306 CTRITKRGLERITQLPCLKVLNLGLWQMTD 335
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 125/254 (49%), Gaps = 44/254 (17%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
GL +L+SLN++ C ++D + L+G+T +S C L + +
Sbjct: 110 GLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-------------LGLEQLTLQD 154
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 270
C + L H+ L L LLNL C ++ A L LS +GS L L C +SD G
Sbjct: 155 CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHLSHMGS---LRLPTCDNISDTG 210
Query: 271 CEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VNL 322
+ +GSL++ L++ F +++ D+ L ++ +GL L+SL+L SC I D+G+ +
Sbjct: 211 IMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQM 269
Query: 323 TGLCNL---KCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
GL L +C+ ++D GL HLS LT ++ T I+ L ++ L
Sbjct: 270 HGLRTLNIGQCVRITD-----KGLELIAEHLSQLTGIDLYG--CTRITKRGLERITQLPC 322
Query: 376 LKSLNLDARQITDT 389
LK LNL Q+TD+
Sbjct: 323 LKVLNLGLWQMTDS 336
>gi|428313363|ref|YP_007124340.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
7113]
gi|428254975|gb|AFZ20934.1| Leucine Rich Repeat (LRR)-containing protein [Microcoleus sp. PCC
7113]
Length = 254
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 15/158 (9%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L L+ +L L L+ Q++D +++ +LK L L ++ITD L L GLT LE
Sbjct: 88 LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQITD--LTPLAGLTKLEV 143
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L L+S I D + L GL NLK L+L Q+ L L+GL NLE+++LS I+D
Sbjct: 144 LYLESNQIKD--INPLAGLANLKTLQLMYNQIAD--LTPLAGLKNLEALHLSGNQITD-- 197
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
+ L GL +LK LNLD QITD +T L GL +LD
Sbjct: 198 ITPLGGLKNLKVLNLDNNQITD-----ITPLAGLANLD 230
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 97/196 (49%), Gaps = 39/196 (19%)
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+ITD L L G TNLE L LDS I D + L L NLK L L+ +Q+ + L L+G
Sbjct: 84 QITD--LTPLAGFTNLEVLILDSNQITD--VTPLARLTNLKDLTLAGSQI--TDLTPLAG 137
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
LT LE + L I D + LAGL++LK+L L QI D LT L GL
Sbjct: 138 LTKLEVLYLESNQIKD--INPLAGLANLKTLQLMYNQIAD-----LTPLAGL-------- 182
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
KNL +L + G +TD + + L +L +LNL N +TD T ++
Sbjct: 183 -------------KNLEALHLSGNQITD--ITPLGGLKNLKVLNLDNN-QITDIT--PLA 224
Query: 469 GLTGLVSLNVSNSRIT 484
GL L SL V + IT
Sbjct: 225 GLANLDSLYVPGNPIT 240
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 88/215 (40%), Gaps = 66/215 (30%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L G +NL L +N IT + A L NL L L L L
Sbjct: 84 QITD--LTPLAGFTNLEVL-ILDSNQIT--DVTPLARLTNLKDLTLAGSQITD--LTPLA 136
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
GL KLE L ++ N I D+ PL+GL NLK+LQ+ +++ D + L GL
Sbjct: 137 GLTKLEVLYLE-SNQI--KDINPLAGLANLKTLQLMYNQIAD--LTPLAGLK-------- 183
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
NLE ++ + ++ LG L
Sbjct: 184 -----------------------NLEALHLSGNQITDITPLGGL---------------- 204
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
+LKVLNL N+ITD + L GL NL+SL
Sbjct: 205 -----KNLKVLNLDNNQITD--ITPLAGLANLDSL 232
>gi|89111184|dbj|BAE80273.1| leucine-rich repeat protein [Acidovorax avenae subsp. avenae]
Length = 547
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 114/250 (45%), Gaps = 19/250 (7%)
Query: 172 DMKPLSGLT---------------NLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
DM+ L GLT L+SL++S C+ +T G+++L ++ L M
Sbjct: 119 DMRGLRGLTLRGDFCDDDLRLLPATLQSLELSDCTGLTARGLSWLL--ALPLATLALRRM 176
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
+R +H L +L L L P+ A +L+ GSL L L+ C L+ +G S
Sbjct: 177 ALRPEAVHA-LARHSRLATLELAHVPLDAEGARALAGAGSLATLRLDHCGLTPEGLAAVS 235
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ L L N + E L GL +L L+LD +G EG + + L+ L L+
Sbjct: 236 SLPRLSRLQARGNGLGPEAAPALPGLRSLVELDLDGNRLGAEGAAVIARMQGLRTLSLNH 295
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+G G R L+ L L+++++ I LA +L++L+L ++ D G+ AL
Sbjct: 296 NALGDDGARALAALPGLQTLSVQANQIGAAGAAALARGPALRALDLHRNRLGDAGVRALA 355
Query: 396 SLTGLTHLDL 405
T LDL
Sbjct: 356 GGTRWQQLDL 365
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 136/340 (40%), Gaps = 45/340 (13%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+G +A AG +L L L+ C GL + L +L L + N + L G
Sbjct: 202 LDAEGARALAGAGSLATLRLDHCGLTPEGLAAVSSLPRLSRLQAR-GNGLGPEAAPALPG 260
Query: 179 LTNLKSLQISCSKVTDSG---IAYLKGLSISSVIF-ILCSMIIRLFCLHVFLTSLQKLTL 234
L +L L + +++ G IA ++GL S+ L R L +L L
Sbjct: 261 LRSLVELDLDGNRLGAEGAAVIARMQGLRTLSLNHNALGDDGAR------ALAALPGLQT 314
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE- 293
L+++ + AA +L+ +L L+L+R +L D G + + L+L N I E
Sbjct: 315 LSVQANQIGAAGAAALARGPALRALDLHRNRLGDAGVRALAGGTRWQQLDLARNGIGAEG 374
Query: 294 -------------CLVHLKGLT----------NLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ H +L L+ C IGD G L+ L
Sbjct: 375 AAALAHLPALDTLVIAHNPLGDAGAGALAASDSLRFLDAGDCRIGDTGASALSRCPQLAS 434
Query: 331 LELSDT-----QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L+++ ++G G L+ +LE I+L + R A L+ L L Q
Sbjct: 435 LVLNNSSAEGVRIGERGALALAASPSLEEIDLEGHAVGSAGARAFAANPRLRRLGLARNQ 494
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDS-----GAAYLRN 420
+ + G AL L LDL+ R+TD GA +LR
Sbjct: 495 VGNAGAHALAGSASLASLDLWDNRVTDKALHSRGAPWLRR 534
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 157/414 (37%), Gaps = 59/414 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ LQSL+ + C ++ GL L L+ + R A+ + + A A L L+L
Sbjct: 142 ATLQSLELSDCTGLTARGLSWL--LALPLATLALRRMALRPEAVHALARHSRLATLELAH 199
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
G L G L +L + C +T + +S L L LQ + + L
Sbjct: 200 VPLDAEGARALAGAGSLATLRLDHCG-LTPEGLAAVSSLPRLSRLQARGNGLGPEAAPAL 258
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
GL + L L+L+G + A ++ + L L+
Sbjct: 259 PGL--------------------------RSLVELDLDGNRLGAEGAAVIARMQGLRTLS 292
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
LN L DDG + + L+ L++ N+I L L +L+L +GD G+
Sbjct: 293 LNHNALGDDGARALAALPGLQTLSVQANQIGAAGAAALARGPALRALDLHRNRLGDAGVR 352
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG------------------- 361
L G + L+L+ +G+ G L+ L L+++ ++
Sbjct: 353 ALAGGTRWQQLDLARNGIGAEGAAALAHLPALDTLVIAHNPLGDAGAGALAASDSLRFLD 412
Query: 362 -----ISDGSLRKLAGLSSLKSLNL-----DARQITDTGLAALTSLTGLTHLDLFGARIT 411
I D L+ L SL L + +I + G AL + L +DL G +
Sbjct: 413 AGDCRIGDTGASALSRCPQLASLVLNNSSAEGVRIGERGALALAASPSLEEIDLEGHAVG 472
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+GA LR L + + +AG + +SL L+L N +TDK L
Sbjct: 473 SAGARAFAANPRLRRLGLARNQVGNAGAHALAGSASLASLDLWDN-RVTDKALH 525
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 143/368 (38%), Gaps = 66/368 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +++L+ + G L +L +L + C ++ GL + L L+ L R
Sbjct: 190 SRLATLELAHVPLDAEGARALAGAGSLATLRLDHC-GLTPEGLAAVSSLPRLSRLQAR-G 247
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + + A GL +LV+LDL+ G + + L +L++ N + D + L
Sbjct: 248 NGLGPEAAPALPGLRSLVELDLDGNRLGAEGAAVIARMQGLRTLSLN-HNALGDDGARAL 306
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH------------V 224
+ L L++L + ++ + + + +R LH
Sbjct: 307 AALPGLQTLSVQANQ-----------IGAAGAAALARGPALRALDLHRNRLGDAGVRALA 355
Query: 225 FLTSLQKLTL----LNLEGC-----------------PVTAACLDSLSALGSLFYLNLNR 263
T Q+L L + EG P+ A +L+A SL +L+
Sbjct: 356 GGTRWQQLDLARNGIGAEGAAALAHLPALDTLVIAHNPLGDAGAGALAASDSLRFLDAGD 415
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
C++ D G S+ L L L N + E + IG+ G + L
Sbjct: 416 CRIGDTGASALSRCPQLASLVL--NNSSAEGVR-----------------IGERGALALA 456
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
+L+ ++L VGS+G R + L + L+ + + LAG +SL SL+L
Sbjct: 457 ASPSLEEIDLEGHAVGSAGARAFAANPRLRRLGLARNQVGNAGAHALAGSASLASLDLWD 516
Query: 384 RQITDTGL 391
++TD L
Sbjct: 517 NRVTDKAL 524
>gi|320163290|gb|EFW40189.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 830
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 132/284 (46%), Gaps = 28/284 (9%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LT+LQ+L NL+ +T ++ L +L L+L QL+ F+ +G+L L+L
Sbjct: 83 LTALQRL---NLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGLGALTNLDL 139
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N++T GL L +L L S I ++ TGL L L +++ V +
Sbjct: 140 TENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNLVTTIPENA 199
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L GL LE ++L + I+ S AGL SL+SL++ A + GLT L L
Sbjct: 200 LPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISAN-----------AFAGLTALTL 248
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
F N L +L + LT LS+LT L+L+ N LT +
Sbjct: 249 F-------------NLTALHTLTLENNLLTSISANAFSGLSALTWLHLAYN-RLTSISAN 294
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
SGL+ L SL ++N+ T+ L +L+SLTL + ++T+
Sbjct: 295 AFSGLSALSSLYLNNNPCTAIAAEAFNGLTSLKSLTLVANQLTS 338
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 179/426 (42%), Gaps = 12/426 (2%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
DL +D+T + + L+SL QI+ GL LT L+ RRN ++A
Sbjct: 18 DLYFTDITSIPAGTFANLTALESLSL-VSGQITSVSPNAFAGLVALTELNLRRN-PLSAV 75
Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
AF GL L +L+L E T +L L L SL I ++ L L
Sbjct: 76 PTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSL-SLTDNQLTTIPENAFAGLGAL 134
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
TNL + + + ++ A GL + + + + I+ + + T L LT L +
Sbjct: 135 TNLDLTENQLTTIPENAFA---GLGALTNLQLPSNKIVSMAAIS--FTGLAGLTTLIMNN 189
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
VT ++L L +L L+L ++ F+ + SL+ L++ N + L
Sbjct: 190 NLVTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLF 249
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
LT L +L L++ + +GL L L L+ ++ S SGL+ L S+ L+
Sbjct: 250 NLTALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNN 309
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
+ + GL+SLKSL L A Q+T A L LT+L L RI A
Sbjct: 310 NPCTAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFT 369
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
L L+I +T L+ L L L N +T + + L+ L L +
Sbjct: 370 GLPVLIYLDIYSNPITSIPSNAFTGLTKLVFLRLDTN-QITSISANAFTELSALRGLWLH 428
Query: 480 NSRITS 485
++RIT+
Sbjct: 429 SNRITT 434
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 150/357 (42%), Gaps = 8/357 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL LT+L N +T AFAGL L L L + ++ GL L +L
Sbjct: 128 FAGLGALTNLDLTENQ-LTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTL- 185
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLSISSVIFILCSMIIRLF 220
I N +T L GL L+ L + + +T SG A+ LS+ S + I + L
Sbjct: 186 IMNNNLVTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRS-LDISANAFAGLT 244
Query: 221 CLHVF-LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
L +F LT+L LTL E +T+ ++ S L +L +L+L +L+ FS + +
Sbjct: 245 ALTLFNLTALHTLTL---ENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSA 301
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L L L N T GLT+L+SL L + + GL L L L + ++
Sbjct: 302 LSSLYLNNNPCTAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYLQNNRIV 361
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
S +GL L +++ I+ GL+ L L LD QIT A T L+
Sbjct: 362 SFSADAFTGLPVLIYLDIYSNPITSIPSNAFTGLTKLVFLRLDTNQITSISANAFTELSA 421
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L L L RIT A L +L + LT K L + L+ S N
Sbjct: 422 LRGLWLHSNRITTLSANAFIGLTALTNLPLNDNPLTTTPPGLFKGLPNSLFLSYSSN 478
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 110/466 (23%), Positives = 186/466 (39%), Gaps = 85/466 (18%)
Query: 81 SNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+N D F I G +L L +L+ +S + IT+ AFAGL+ L +L+L
Sbjct: 12 TNTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQ----ITSVSPNAFAGLVALTELNL 67
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
R N ++ +GLT L+ L + +++T
Sbjct: 68 RR-------------------------NPLSAVPTSAFTGLTALQRLNLDHNEIT----- 97
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258
++S+ F L LT L+L +T ++ + LG+L
Sbjct: 98 -----TLSANAF----------------PHLPALTSLSLTDNQLTTIPENAFAGLGALTN 136
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
L+L QL+ F+ +G+L L L N+I + GL L +L +++ +
Sbjct: 137 LDLTENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNLVTTIP 196
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L GL L+ L+L + S +GL +L S+++S + + L L++L +
Sbjct: 197 ENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNLTALHT 256
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA-----------YLRN------- 420
L L+ +T A + L+ LT L L R+T A YL N
Sbjct: 257 LTLENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNPCTAIA 316
Query: 421 ------FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
+L+SL + LT L++LT L L QN + + + +GL L+
Sbjct: 317 AEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYL-QNNRIVSFSADAFTGLPVLI 375
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 517
L++ ++ ITS L L L L++ ++T AN L +
Sbjct: 376 YLDIYSNPITSIPSNAFTGLTKLVFLRLDTNQITSISANAFTELSA 421
>gi|421888174|ref|ZP_16319282.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
gi|378966463|emb|CCF96030.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
Length = 468
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 184/437 (42%), Gaps = 45/437 (10%)
Query: 72 SGLIHLKDCSNLQSLD-FNFCIQISDGGLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAG 129
+GL K N +L+ + +D L+ L L L R ITA G+ A
Sbjct: 41 AGLAGAKRTGNYPALEKLTLAVPFTDADLKGL--PPTLKELDLSRCRGGITAAGI-AHLN 97
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLE------SLNIKWCNCITDSDMKPLSGLTNLK 183
+ LV+L+L +G + L G +L +L++ C I + + L+ L
Sbjct: 98 RLPLVRLNL------NGNRIGLAGAQRLANHPTLTALDVGRCR-IGPEEARELAASARLT 150
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
+L +S +++ G+ L + LT L++ +
Sbjct: 151 TLNVSRNRIGGEGVRAL--------------------------ADCKTLTSLDVSENGLG 184
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
A L A L LN+NR ++ G + +L L++G N I DE + L
Sbjct: 185 DAEAQRLGASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQ 244
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L +LN++ G+G G+ L L L + +G G L+ +L +++ GI
Sbjct: 245 LTTLNVERAGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEGNGIG 304
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
+ LA + L +LNL + D G AL + T L L + ++D+GA L +
Sbjct: 305 LAGAKALAANTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRT 364
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
L +L+I + DAG + + +LT LN+S N + + ++ L SL++ N+R+
Sbjct: 365 LTTLDIGDNAIKDAGARALAANRTLTTLNVSSN-EIGNAGARALAANARLKSLDLRNNRM 423
Query: 484 TSAGLRHLKPLKNLRSL 500
G+R L + L SL
Sbjct: 424 LEGGVRALLANRTLSSL 440
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 164/377 (43%), Gaps = 8/377 (2%)
Query: 83 LQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ LD + C I+ G+ HL L L L+ N I G + A L LD+ RC
Sbjct: 76 LKELDLSRCRGGITAAGIAHLNRLP-LVRLNLN-GNRIGLAGAQRLANHPTLTALDVGRC 133
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
L +L +LN+ N I ++ L+ L SL +S + + D A +
Sbjct: 134 RIGPEEARELAASARLTTLNVSR-NRIGGEGVRALADCKTLTSLDVSENGLGD---AEAQ 189
Query: 202 GLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
L S + L R+ L + + LT L++ G + +D+L A L LN
Sbjct: 190 RLGASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQLTTLN 249
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
+ R + G + + +L L + N I DE L +L +L+ + GIG G
Sbjct: 250 VERAGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLHSEGNGIGLAGAK 309
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
L L L L VG +G + L T L +++ G+SD +LA +L +L+
Sbjct: 310 ALAANTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLD 369
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
+ I D G AL + LT L++ I ++GA L L+SL++ + + GV+
Sbjct: 370 IGDNAIKDAGARALAANRTLTTLNVSSNEIGNAGARALAANARLKSLDLRNNRMLEGGVR 429
Query: 441 HIKDLSSLTLLNLSQNC 457
+ +L+ L +S NC
Sbjct: 430 ALLANRTLSSLGVSFNC 446
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 137/304 (45%), Gaps = 7/304 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++++S + + G+ L DC L SLD + + D + L LT+L+ RN
Sbjct: 147 ARLTTLNVSRNRIGGEGVRALADCKTLTSLDVSEN-GLGDAEAQRLGASERLTTLNVNRN 205
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I G +A A L LD+ + G+ L +L +LN++ + ++ L
Sbjct: 206 R-IDVPGARALAACKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERAG-VGAHGVQAL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSIS-SVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ L SL+I + + D G L SIS + + + I + ++ LT L
Sbjct: 264 ADCKTLTSLRIDSNNIGDEGANTLAA-SISLTTLHSEGNGIGLAGAKALAANTM--LTTL 320
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
NL V A +L A +L +L++ R LSD G + + +L L++G N I D
Sbjct: 321 NLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGA 380
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L L +LN+ S IG+ G L LK L+L + ++ G+R L L S+
Sbjct: 381 RALAANRTLTTLNVSSNEIGNAGARALAANARLKSLDLRNNRMLEGGVRALLANRTLSSL 440
Query: 356 NLSF 359
+SF
Sbjct: 441 GVSF 444
>gi|261331192|emb|CBH14182.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
gambiense DAL972]
Length = 490
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 124/467 (26%), Positives = 208/467 (44%), Gaps = 47/467 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V L L+ C+++Q+L F +D L + L +L LS A ++ F
Sbjct: 48 VERESLRFLRLCTSIQTLRFEGEYPFAD--LSPIPELRSLGELSIEE-----APKLENFV 100
Query: 129 GLINLVKLDLERCTR--IHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
G+ NL +L I GG L L L L + C + D+ PL+ +T L+ L
Sbjct: 101 GIKNLPQLKALEVAEAPIRGGCLQTLTAGCNLVKLCLDSCPYL--KDVSPLAEMTALEHL 158
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL----TLLNLEGCP 241
I ++GI L L ++++ + + SL+ L +LLNL C
Sbjct: 159 AICKCVGIETGIGSLGKLPALRELYLIGT--------SMRGNSLRGLGATTSLLNL--CI 208
Query: 242 VTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
V+ CL ++ + L L L C ++G K + +L L+L ++ I D V L
Sbjct: 209 VSCGCLTDVLHIADVQVLRQLTLESCTSLEEGVGKLGGLPALYELDLSYSSIVD---VFL 265
Query: 299 KGLTN---LESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNL 352
+GL++ L LNL C + L +++ L LK L+ L + +G+ L L L
Sbjct: 266 QGLSSSRSLVKLNLSWC----DQLTDVSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGL 321
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARIT 411
++LS T I+D +LR L SL L++ + +TD L+AL SL L L+L
Sbjct: 322 YELDLSCTPITDCALRDLCSSRSLVRLDISSCDNLTD--LSALVSLKTLGELNLDACTEV 379
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
G + LR L+ +TD ++ + SL +L L ++TD + ++ +
Sbjct: 380 KQGIGNISQLPELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITD--VSCLAAVK 437
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
L +++++ G+ L L LRS+ L K+ + + LQ+R
Sbjct: 438 TLEEISLNSCLSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQAR 484
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 121/295 (41%), Gaps = 62/295 (21%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S + D L L +L L+ ++C Q++D
Sbjct: 248 PALYELDLSYSSIVDVFLQGLSSSRSLVKLNLSWCDQLTD-------------------- 287
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ A L L L+L+ C + G+ +L L L L++ C ITD ++ L
Sbjct: 288 -------VSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGLYELDLS-CTPITDCALRDL 339
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+L L I SC +TD +S+++ SL+ L L
Sbjct: 340 CSSRSLVRLDISSCDNLTD----------LSALV------------------SLKTLGEL 371
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD-E 293
NL+ C + ++S L L L+ ++DD S SL VL L +ITD
Sbjct: 372 NLDACTEVKQGIGNISQLPELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITDVS 431
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
CL +K LE ++L+SC ++G+ LT L L+ + L ++ S L L
Sbjct: 432 CLAAVK---TLEEISLNSCLSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQA 483
>gi|290991093|ref|XP_002678170.1| predicted protein [Naegleria gruberi]
gi|284091781|gb|EFC45426.1| predicted protein [Naegleria gruberi]
Length = 156
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
LK L++ ++ +G G + +S +T+LE+++LS + D L + L L++ ++T
Sbjct: 4 LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVT 63
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
G +++SL L L++ I D+GA ++ N KNL L G G+++ GV+ I + S
Sbjct: 64 SIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMES 123
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
LT L+L +N + + T LIS + L SL++SN
Sbjct: 124 LTALSLQKNDDFEENTPLLISTMKQLTSLDLSN 156
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+T+LE+L+L +GD+G V L + L L + +V S G +S L NL ++N+S
Sbjct: 25 MTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVTSIGAESISSLQNLITLNISQN 84
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
I+D + ++ L +L L D I++ G+ +TS+ LT L L
Sbjct: 85 IIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMESLTALSL 129
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN- 458
L L ++ + + + GA + +L +L + G + D G + + L + LS CN
Sbjct: 4 LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQL--VKLSIPCNR 61
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
+T E IS L L++LN+S + I G + + LKNL L + ++ + ++ + S
Sbjct: 62 VTSIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSM 121
Query: 519 D 519
+
Sbjct: 122 E 122
>gi|290970032|ref|XP_002668015.1| predicted protein [Naegleria gruberi]
gi|284081037|gb|EFC35271.1| predicted protein [Naegleria gruberi]
Length = 224
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 102/197 (51%), Gaps = 2/197 (1%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L L++ + IG+EG + + L L++ + S GL H++ L L+ + + +
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+ DG+ + ++ + L +LN++ I + G ++ L +T+L++ I + G ++
Sbjct: 61 SVGDGA-KYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISR 119
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
K L L I + D GV + L LT L++S++ + +K +L+S + L L++S
Sbjct: 120 MKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHI-IGEKGTKLLSEMEQLTHLDISE 178
Query: 481 SRITSAGLRHLKPLKNL 497
I G++H+ +KNL
Sbjct: 179 CCIQYEGVKHISEMKNL 195
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ ++G + ++ L L++G N+I + L H+ L L+ L + +GD G ++ +
Sbjct: 14 IGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYNSVGD-GAKYISEM 72
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L ++ + G + +S L + ++N+SF I + L ++ + L LN+ +
Sbjct: 73 KQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISRMKQLTHLNIQSNN 132
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
I DTG+ L L LT LD+ I + G L + L L+I + GVKHI ++
Sbjct: 133 IDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDISECCIQYEGVKHISEM 192
Query: 446 SSLTLLNLSQNC 457
+LT N+ NC
Sbjct: 193 KNLTYPNICLNC 204
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 5/225 (2%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT L++ + + + L YL++ R ++ G + + LK L + +N
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 289 EITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
+ D + + +K LTNL N+++ I ++G ++ L + L +S ++G+ GL H+
Sbjct: 61 SVGDGAKYISEMKQLTNL---NVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHI 117
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
S + L +N+ I D + L GL L +L++ I + G L+ + LTHLD+
Sbjct: 118 SRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDIS 177
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
I G ++ KNL IC G K + ++ +L L
Sbjct: 178 ECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
+ L L++ I + G + + LT+LD+ I G ++ N L+ L I
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
+ D G K+I ++ LT LN++ C + +K + IS L + +LN+S + I + GL H+
Sbjct: 61 SVGD-GAKYISEMKQLTNLNVNTAC-INEKGAKFISELPLVTNLNISFNEIGNQGLEHIS 118
Query: 493 PLKNLRSLTLESCKVTANDIKRLQSRD 519
+K L L ++S + + L D
Sbjct: 119 RMKQLTHLNIQSNNIDDTGVYFLHGLD 145
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 77/155 (49%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ +++LT LN+ + +S L + LN++ ++ + G E S++ L LN
Sbjct: 68 YISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISRMKQLTHLN 127
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I D + L GL L +L++ IG++G L+ + L L++S+ + G++
Sbjct: 128 IQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDISECCIQYEGVK 187
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
H+S + NL N+ G + L + +L L
Sbjct: 188 HISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222
>gi|71744514|ref|XP_803787.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831052|gb|EAN76557.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 490
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 124/467 (26%), Positives = 208/467 (44%), Gaps = 47/467 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V L L+ C+++Q+L F +D L + L +L LS A ++ F
Sbjct: 48 VERESLRSLRLCTSIQTLRFEGEYPFAD--LSPIPELRSLGELSIEE-----APKLENFV 100
Query: 129 GLINLVKLDLERCTR--IHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
G+ NL +L I GG L L L L + C + D+ PL+ +T L+ L
Sbjct: 101 GIKNLPQLKALEVAEAPIRGGCLQTLTAGCNLVKLCLDSCPYL--KDVSPLAEMTALEHL 158
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL----TLLNLEGCP 241
I ++GI L L ++++ + + SL+ L +LLNL C
Sbjct: 159 AICKCVGIETGIGSLGKLPALRELYLIGT--------SMRGNSLRGLGATTSLLNL--CI 208
Query: 242 VTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
V+ CL ++ + L L L C ++G K + +L L+L ++ I D V L
Sbjct: 209 VSCGCLTDVLHIADVQVLRQLTLESCTSLEEGVGKLGGLPALYELDLSYSSIVD---VFL 265
Query: 299 KGLTN---LESLNLDSCGIGDEGLVNLTGLCNLKCLE---LSDTQVGSSGLRHLSGLTNL 352
+GL++ L LNL C + L +++ L LK L+ L + +G+ L L L
Sbjct: 266 QGLSSSRSLVKLNLSWC----DQLTDVSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGL 321
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARIT 411
++LS T I+D +LR L SL L++ + +TD L+AL SL L L+L
Sbjct: 322 YELDLSCTPITDCALRDLCSSRSLVRLDISSCDNLTD--LSALVSLKTLGELNLDACTEV 379
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
G + LR L+ +TD ++ + SL +L L ++TD + ++ +
Sbjct: 380 KQGIGNISQLPELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITD--VSCLAAVK 437
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
L +++++ G+ L L LRS+ L K+ + + LQ+R
Sbjct: 438 TLEEISLNSCLSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQAR 484
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 121/295 (41%), Gaps = 62/295 (21%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S + D L L +L L+ ++C Q++D
Sbjct: 248 PALYELDLSYSSIVDVFLQGLSSSRSLVKLNLSWCDQLTD-------------------- 287
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ A L L L+L+ C + G+ +L L L L++ C ITD ++ L
Sbjct: 288 -------VSPLAELKTLKYLNLQSCEAVVAGIGDLGKLPGLYELDLS-CTPITDCALRDL 339
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+L L I SC +TD +S+++ SL+ L L
Sbjct: 340 CSSRSLVRLDISSCDNLTD----------LSALV------------------SLKTLGEL 371
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD-E 293
NL+ C + ++S L L L+ ++DD S SL VL L +ITD
Sbjct: 372 NLDACTEVKQGIGNISQLPELRRLDGTCLPITDDSLRDLSASRSLVVLCLDTCMDITDVS 431
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
CL +K LE ++L+SC ++G+ LT L L+ + L ++ S L L
Sbjct: 432 CLAAVK---TLEEISLNSCLSVEKGVEALTTLPRLRSVNLRGVKIDSEVLSELQA 483
>gi|290988772|ref|XP_002677066.1| predicted protein [Naegleria gruberi]
gi|284090672|gb|EFC44322.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 109/220 (49%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N + D L +T L +L + + I D + ++ + L L+L Q+ + G + +S
Sbjct: 44 NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L NL +N+ I+D + ++ L +L L + + +IT ++ L LT L++
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
I D GA ++ K+L+ L+I G++ G K I +L LT+L +SQN ++ D+ +I
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
S + L L + + I +AG + + L L + ++
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEI 263
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 1/192 (0%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+ D+ + S++ L L+L N+I +E + L NL LN+ + I DEG+ +++ L
Sbjct: 70 IDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNIGNNPINDEGIESISQL 129
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
NL L +S ++ S + +S L NL +N+++ I D + ++ + SLK L++
Sbjct: 130 DNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAKFISEIKSLKILDISLNG 189
Query: 386 ITDTGLAALTSLTGLTHLDLF-GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
I+ G +++ L LT L + I D GA + K L L I + +AG I
Sbjct: 190 ISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNELYIQDCFIGNAGAISISR 249
Query: 445 LSSLTLLNLSQN 456
+ LT L++S+N
Sbjct: 250 MDKLTHLDISEN 261
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 108/234 (46%), Gaps = 1/234 (0%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
L + +LT L + + + +S + L L+L Q+ ++G + S++ +L LN
Sbjct: 53 MLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLN 112
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G N I DE + + L NL L + S I + ++ L NL L ++ +G G +
Sbjct: 113 IGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAK 172
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHL 403
+S + +L+ +++S GIS + ++ L L L + I D G ++ + L L
Sbjct: 173 FISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMISEMKQLNEL 232
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
+ I ++GA + L L+I + G I+D+ L+ L++ C
Sbjct: 233 YIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIEGQC 286
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
SI + ++D L ++ L +L + I D + ++ + LT LDL +I +
Sbjct: 38 SITFARNILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNE 97
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
GA + +NL L I + D G++ I L +LT L +S + +T K+ + IS L L
Sbjct: 98 GAKSISELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVS-SLRITSKSAKFISKLNNL 156
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
LN++ + I G + + +K+L+ L +
Sbjct: 157 TLLNIAYNNIGDEGAKFISEIKSLKILDI 185
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 113/264 (42%), Gaps = 35/264 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
++D L ++ LT+L NN I +K + + L LDLE + G ++
Sbjct: 46 LNDNWFNMLGRMTQLTTLEIG-NNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISE 104
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L L LNI N I D ++ +S L NL L +S ++T
Sbjct: 105 LRNLTYLNIG-NNPINDEGIESISQLDNLTDLTVSSLRITSKSAK--------------- 148
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
F++ L LTLLN+ + +S + SL L+++ +S G +
Sbjct: 149 -----------FISKLNNLTLLNIAYNNIGDEGAKFISEIKSLKILDISLNGISPIGAKS 197
Query: 274 FSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
S++ L VL + N I DE + + L L + C IG+ G ++++ + L L+
Sbjct: 198 ISELDQLTVLYISQNFSIGDEGARMISEMKQLNELYIQDCFIGNAGAISISRMDKLTHLD 257
Query: 333 LSDTQVGSSG------LRHLSGLT 350
+S+ ++ G ++HLS L+
Sbjct: 258 ISENEIQIEGESVIRDMKHLSYLS 281
>gi|290991576|ref|XP_002678411.1| predicted protein [Naegleria gruberi]
gi|284092023|gb|EFC45667.1| predicted protein [Naegleria gruberi]
Length = 153
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 75/145 (51%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
LN+G+NEIT E + + L SL + + I D+G L+ + L L +S+ + G
Sbjct: 7 LNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNNETSDEG 66
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+H+S + L S+ + I D + ++ + L SLN+ +I+D G ++ + LT
Sbjct: 67 AKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISEMKQLTL 126
Query: 403 LDLFGARITDSGAAYLRNFKNLRSL 427
L ++ I+D GA YL K L SL
Sbjct: 127 LYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ L S+N+ + I+ + ++ + L SL + +I+D G L+ + LT L++
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+D GA ++ K L SL I + D G K+I ++ LT LN+ N ++D+ + IS
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYN-EISDEGAKYIS 119
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ L L + N+ I+ G ++L +K L SL
Sbjct: 120 EMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ L L + ++ G + +S + L S+ + ISD + L+ + L SLN+
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+ +D G ++ + LT L ++ +I D GA Y+ K L SL I ++D G K+I +
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
+ LTLL + N ++DK + +S + L SL
Sbjct: 121 MKQLTLLYIYNN-EISDKGAKYLSEMKQLTSL 151
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ I EG ++ + L L + + ++ G ++LS + L S+N+S
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
SD + ++ + L SL + QI D G ++ + LT L++ I+D GA Y+
Sbjct: 61 ETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISE 120
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
K L L I ++D G K++ ++ LT L
Sbjct: 121 MKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT LN+ +T +S + L L + ++SD G + S++ L LN+ N
Sbjct: 1 MKQLTSLNIGYNEITVEGAKFISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
E +DE H+ + L SL + D Q+G G +++S
Sbjct: 61 ETSDEGAKHISEMKQLTSLY------------------------IYDNQIGDKGAKYISE 96
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ L S+N+ + ISD + ++ + L L + +I+D G L+ + LT L
Sbjct: 97 MKQLTSLNIGYNEISDEGAKYISEMKQLTLLYIYNNEISDKGAKYLSEMKQLTSL 151
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 67/131 (51%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT L + ++ LS + L LN++ + SD+G + S++ L L
Sbjct: 21 FISEMKQLTSLCIYNNEISDKGAKYLSEMKQLTSLNVSNNETSDEGAKHISEMKQLTSLY 80
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N+I D+ ++ + L SLN+ I DEG ++ + L L + + ++ G +
Sbjct: 81 IYDNQIGDKGAKYISEMKQLTSLNIGYNEISDEGAKYISEMKQLTLLYIYNNEISDKGAK 140
Query: 345 HLSGLTNLESI 355
+LS + L S+
Sbjct: 141 YLSEMKQLTSL 151
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNLTSLSFRR 115
L S+++ +++T G + + L SL CI +ISD G ++L + LTSL+
Sbjct: 4 LTSLNIGYNEITVEGAKFISEMKQLTSL----CIYNNEISDKGAKYLSEMKQLTSLNVS- 58
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN + +G K + + L L + G + + +L SLNI + N I+D K
Sbjct: 59 NNETSDEGAKHISEMKQLTSLYIYDNQIGDKGAKYISEMKQLTSLNIGY-NEISDEGAKY 117
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYL 200
+S + L L I ++++D G YL
Sbjct: 118 ISEMKQLTLLYIYNNEISDKGAKYL 142
>gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 652
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 132/512 (25%), Positives = 229/512 (44%), Gaps = 89/512 (17%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTD--SGLI 75
LT+V+ +A + L+ LCLG+ G+ D + IA + S L V L VTD +GLI
Sbjct: 139 LTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVRCSKLRHVGLRWCIRVTDFGAGLI 198
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AGLINLV 134
+K C ++SLD ++ + I++ L H+ L +L L I G+ A ++
Sbjct: 199 AIK-CKEIRSLDLSY-LPITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMK 256
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L +C I G + + SL SG NL+ L +S S +
Sbjct: 257 MLNLSKCQNI--------GHIGIASLT---------------SGSQNLEKLILSSSVIVT 293
Query: 195 SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
+ +A CL F +L + L+ C T + L ++ LG
Sbjct: 294 TDLAK---------------------CLQSF----SRLQSVKLDSCLGTKSGLKAIGNLG 328
Query: 255 -SLFYLNLNRCQ-LSDDGC----------EKFSKIGSLKVLNLGFNEITDECLVHLKGLT 302
SL LNL++C ++D+ EK + + + +T+ CL
Sbjct: 329 ASLKELNLSKCVGVTDENLPFLVQPHKDLEKLDITCCHTITHASISSLTNSCL------- 381
Query: 303 NLESLNLDSCG-IGDEGLVNLTGLCNL-KCLELSDTQVGSSGLRHLSGLTNLESINLSF- 359
L SL ++SC + EG + G C L + L+++DT++ GL+ +S T L S+ L
Sbjct: 382 RLTSLRMESCSLVSREGFL-FIGRCQLLEELDVTDTEIDDQGLQSISRCTKLSSLKLGIC 440
Query: 360 TGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL----FGARITDS 413
+ I+D L+ +A S LK L+L + +ITD G+ A+ G L++ + + TD+
Sbjct: 441 SMITDNGLKHIASSCSKLKQLDLYRSSRITDEGIVAIA--LGCPSLEVVNIAYNSNTTDT 498
Query: 414 GAAYLRNFKNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDK-TLELISGL 470
+L + LR+LEI G ++ G+ +I L +L++ + + D ++L
Sbjct: 499 SLEFLSKCQKLRTLEIRGCPRISPKGLSNIVARCRYLEMLDIKKCHKINDTGMIQLAQHS 558
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L + +S +T GL L + L+ +++
Sbjct: 559 QNLKHIKLSYCSVTDVGLIALASISCLQHISI 590
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 132/254 (51%), Gaps = 13/254 (5%)
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLEL 333
K ++ L+L + IT++CL H+ L +LE L L+ C GI D GL L C ++K L L
Sbjct: 201 KCKEIRSLDLSYLPITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMKMLNL 260
Query: 334 SDTQ-VGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTG 390
S Q +G G+ L SG NLE + LS + I L K L S L+S+ LD+ T +G
Sbjct: 261 SKCQNIGHIGIASLTSGSQNLEKLILSSSVIVTTDLAKCLQSFSRLQSVKLDSCLGTKSG 320
Query: 391 LAALTSL-TGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI-CGGGLTDAGVKHIKDLS 446
L A+ +L L L+L +TD +L + K+L L+I C +T A + + + S
Sbjct: 321 LKAIGNLGASLKELNLSKCVGVTDENLPFLVQPHKDLEKLDITCCHTITHASISSLTN-S 379
Query: 447 SLTLLNLS-QNCNLTDKTLELISGLTGLV-SLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L L +L ++C+L + L G L+ L+V+++ I GL+ + L SL L
Sbjct: 380 CLRLTSLRMESCSLVSREGFLFIGRCQLLEELDVTDTEIDDQGLQSISRCTKLSSLKLGI 439
Query: 505 CK-VTANDIKRLQS 517
C +T N +K + S
Sbjct: 440 CSMITDNGLKHIAS 453
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 36/238 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
L +D++ +++ D GL + C+ L SL C I+D GL+H+ S L L R++
Sbjct: 408 LEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSS 467
Query: 118 AITAQGMKAFA------GLINLV--------------------KLDLERCTRIHG-GLVN 150
IT +G+ A A ++N+ L++ C RI GL N
Sbjct: 468 RITDEGIVAIALGCPSLEVVNIAYNSNTTDTSLEFLSKCQKLRTLEIRGCPRISPKGLSN 527
Query: 151 LKGLMK-LESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLSISSV 208
+ + LE L+IK C+ I D+ M L+ + NLK +++S VTD G+ L +S
Sbjct: 528 IVARCRYLEMLDIKKCHKINDTGMIQLAQHSQNLKHIKLSYCSVTDVGLIALASISCLQH 587
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
I I + L FL + Q LT + L AC +SL L Y+ C L
Sbjct: 588 ISIFHVEGLTSNGLAAFLLACQTLTKVKLH------ACFESLIPQQILKYMEARGCAL 639
>gi|407859465|gb|EKG07051.1| hypothetical protein TCSYLVIO_001824 [Trypanosoma cruzi]
Length = 929
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 122/484 (25%), Positives = 203/484 (41%), Gaps = 61/484 (12%)
Query: 58 SLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS + VT+ G+ + + L L C +I L+ LR L+ L L+
Sbjct: 367 ALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIE--SLQWLRALNQLRVLNLG-Y 423
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-------------------------GLVNL 151
+++T + A L KLDL+ C RI GLV L
Sbjct: 424 SSVTDDSLTALRFCPELAKLDLQWCGRITSLKYLVGALCDSLRELNLTETSVTDEGLVPL 483
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
K LE ++++ C + SD+ L LT L+ + + ++VT+ G+ L V+ +
Sbjct: 484 KDFAALELISLEGCGAV--SDLNVLCNLTRLREMDVGRTRVTNRGVVSLSQCQALRVMRM 541
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
RL + FL +LQ+L ++L CPVT + L SL L L C D
Sbjct: 542 --RQCYRLTDAN-FLGALQQLEEVDLSDCPVTNEGIAGLFGARSLRKLRLQSCHAVSD-V 597
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKC 330
+ L +L+L + +E V L L +L + S + N L LK
Sbjct: 598 NFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKR 657
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINL-----------------SFTGISDGSLRKLAGL 373
L+LS T+V S L L LE+++L S G+ R +
Sbjct: 658 LDLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLDFLILQPSSGAGVCAIVPRDVEPH 717
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
++ + + +D G + + ++T + I + AA + + LR L + G
Sbjct: 718 DTVGDIIAGKEKNSDDGPSPIETMT------INDGVIKSAAAAAVVSRHRLRELTLSDTG 771
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493
+TD G++ ++ L L L+ N TD + ++ L+ L L++S + +T +GL L P
Sbjct: 772 VTDEGLRALQYCPGLERLRLAHCKNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSP 829
Query: 494 LKNL 497
NL
Sbjct: 830 SGNL 833
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 15/252 (5%)
Query: 265 QLSDDGCEKFS------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+LS +GC K + L+VLNLG++ +TD+ L L+ L L+L CG
Sbjct: 395 RLSLEGCRKIESLQWLRALNQLRVLNLGYSSVTDDSLTALRFCPELAKLDLQWCGRITSL 454
Query: 319 LVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSL 376
+ LC+ L+ L L++T V GL L LE I+L G +SD L L L+ L
Sbjct: 455 KYLVGALCDSLRELNLTETSVTDEGLVPLKDFAALELISLEGCGAVSD--LNVLCNLTRL 512
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLT 435
+ +++ ++T+ G+ +L+ L + + R+TD A +L + L +++ +T
Sbjct: 513 REMDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTD--ANFLGALQQLEEVDLSDCPVT 570
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
+ G+ + SL L L Q+C+ + + GL L+ L++ ++ + G L
Sbjct: 571 NEGIAGLFGARSLRKLRL-QSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCP 628
Query: 496 NLRSLTLESCKV 507
L +L + S V
Sbjct: 629 QLMTLIMHSVLV 640
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 172/431 (39%), Gaps = 81/431 (18%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ SL A R C L L L Q+ G ++ + SL ++L+ + VTD GL+ LK
Sbjct: 426 VTDDSLTALRFCPELAKLDL-QWCGRITSLKYLVGALCDSLRELNLTETSVTDEGLVPLK 484
Query: 79 DCSNLQSLDFNFCIQISD----GGLEHLRGL-------SNLTSLSFRRNNAITAQGMKA- 126
D + L+ + C +SD L LR + +N +S + A+ M+
Sbjct: 485 DFAALELISLEGCGAVSDLNVLCNLTRLREMDVGRTRVTNRGVVSLSQCQALRVMRMRQC 544
Query: 127 --------FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
L L ++DL C + G+ L G L L ++ C+ ++D + L G
Sbjct: 545 YRLTDANFLGALQQLEEVDLSDCPVTNEGIAGLFGARSLRKLRLQSCHAVSDVNF--LGG 602
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ-------- 230
L +L L + + V + G SV C ++ L V + SLQ
Sbjct: 603 LEHLMLLDLHHTTVDEEG----------SVGLAQCPQLMTLIMHSVLVHSLQQWNAALFL 652
Query: 231 -KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ--------------------LSDD 269
+L L+L VT+ L L L L+L C+ +
Sbjct: 653 PRLKRLDLSTTKVTSDALSFLRMCPVLETLSLRGCKNITHLDFLILQPSSGAGVCAIVPR 712
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
E +G + G + +D+ G + +E++ ++ I + L+
Sbjct: 713 DVEPHDTVGDIIA---GKEKNSDD------GPSPIETMTINDGVIKSAAAAAVVSRHRLR 763
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQ 385
L LSDT V GLR L LE + L+ FT ++ L LS LK L+L A
Sbjct: 764 ELTLSDTGVTDEGLRALQYCPGLERLRLAHCKNFTDVA-----VLRWLSQLKELDLSATG 818
Query: 386 ITDTGLAALTS 396
+T +GLA L+
Sbjct: 819 VTGSGLAKLSP 829
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 134/310 (43%), Gaps = 37/310 (11%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG------CEKFSKIG- 278
++ L KL+ L+LEGC + L L AL L LNL ++DD C + +K+
Sbjct: 387 VSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLNLGYSSVTDDSLTALRFCPELAKLDL 445
Query: 279 ------------------SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
SL+ LNL +TDE LV LK LE ++L+ CG +
Sbjct: 446 QWCGRITSLKYLVGALCDSLRELNLTETSVTDEGLVPLKDFAALELISLEGCG----AVS 501
Query: 321 NLTGLCNL---KCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSL 376
+L LCNL + +++ T+V + G+ LS L + + ++D + L L L
Sbjct: 502 DLNVLCNLTRLREMDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQL 559
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ ++L +T+ G+A L L L L S +L ++L L++ + +
Sbjct: 560 EEVDLSDCPVTNEGIAGLFGARSLRKLRLQSCHAV-SDVNFLGGLEHLMLLDLHHTTVDE 618
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
G + L L + + + L L L++S +++TS L L+
Sbjct: 619 EGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPV 678
Query: 497 LRSLTLESCK 506
L +L+L CK
Sbjct: 679 LETLSLRGCK 688
>gi|320165520|gb|EFW42419.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 694
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 132/304 (43%), Gaps = 25/304 (8%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L LT+L L G +T + + L +L LNL+ QL+ + F+ + +L+ LNL N
Sbjct: 114 LAALTMLFLPGNNITGIPANVFAGLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSN 173
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDE-----------GLVNL-------------TG 324
+IT L L+SL L +G G ++L TG
Sbjct: 174 QITSISAAGFADLAALKSLGLSGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTG 233
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L L L LS+ + S ++GLT L+ +++S + AGL++L L+L
Sbjct: 234 LAALNTLFLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNN 293
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
Q T A T LT LT L L + TD A L L + G LT + D
Sbjct: 294 QATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLD 353
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
L+ L L+LS N +T +GLT L SL +S +++TS L L L+L++
Sbjct: 354 LTLLNFLSLSAN-QITSIPASAFTGLTALFSLILSRNQLTSIPAAAFSGLTLLNILSLDT 412
Query: 505 CKVT 508
T
Sbjct: 413 NPFT 416
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 1/260 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+L LT L+L +T ++ + L +L L L ++ F+ + +L VLNL
Sbjct: 87 FANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIPANVFAGLTALLVLNL 146
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N++ GLT L++LNL S I L LK L LS ++GS+
Sbjct: 147 SGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSGNRLGSNLANA 206
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+ + L I+LS I+ GL++L +L L IT A+T LT L +LD+
Sbjct: 207 FTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVTGLTALKYLDV 266
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G + T A+ L L + T L++LT L LS N TD +
Sbjct: 267 SGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNN-QFTDISAN 325
Query: 466 LISGLTGLVSLNVSNSRITS 485
+GL L+ L ++ +++TS
Sbjct: 326 AFAGLPALMELGLAGNQLTS 345
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 112/268 (41%), Gaps = 1/268 (0%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+T+ + + L +L L+L Q++D F+ + +L +L L N IT GL
Sbjct: 79 ITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIPANVFAGL 138
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T L LNL + TGL L+ L L Q+ S + L L+S+ LS
Sbjct: 139 TALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSGNR 198
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
+ S+L ++L QIT A T L L L L IT A +
Sbjct: 199 LGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVTGL 258
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
L+ L++ G T L++LT L+LS N T + +GLT L SL +SN+
Sbjct: 259 TALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNN-QATSISAWAFTGLTALTSLQLSNN 317
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTA 509
+ T L L L L ++T+
Sbjct: 318 QFTDISANAFAGLPALMELGLAGNQLTS 345
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 1/227 (0%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+L N+IT LT L L+L I D GL L L L +
Sbjct: 72 LSLSINQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIP 131
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+GLT L +NLS ++ GL++L++LNL + QIT A L L
Sbjct: 132 ANVFAGLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKS 191
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L L G R+ + A N L +++ +T L++L L LS N N+T
Sbjct: 192 LGLSGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNN-NITSI 250
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
++GLT L L+VS ++ TS L L L+L + + T+
Sbjct: 251 PANAVTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATS 297
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 146/350 (41%), Gaps = 8/350 (2%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCN 166
TSLS N IT+ AFA L L +LDL + T I GL L L + N
Sbjct: 70 TSLSLSINQ-ITSIPASAFANLTALTELDLTVNQITDISANA--FAGLAALTMLFLPGNN 126
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226
IT +GLT L L +S +++ GL+ + + + I +
Sbjct: 127 -ITGIPANVFAGLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAG--F 183
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
L L L L G + + ++ + +L +++L+ Q++ + F+ + +L L L
Sbjct: 184 ADLAALKSLGLSGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLS 243
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
N IT + GLT L+ L++ + GL L L LS+ Q S
Sbjct: 244 NNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAF 303
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
+GLT L S+ LS +D S AGL +L L L Q+T +AL LT L L L
Sbjct: 304 TGLTALTSLQLSNNQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLS 363
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+IT A+ L SL + LT L+ L +L+L N
Sbjct: 364 ANQITSIPASAFTGLTALFSLILSRNQLTSIPAAAFSGLTLLNILSLDTN 413
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
SL+L QIT +A +LT LT LDL +ITD A L L + G +T
Sbjct: 71 SLSLSINQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGI 130
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
L++L +LNLS N L + +GLT L +LN+ +++ITS L L
Sbjct: 131 PANVFAGLTALLVLNLSGN-QLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAAL 189
Query: 498 RSLTLESCKVTAN 510
+SL L ++ +N
Sbjct: 190 KSLGLSGNRLGSN 202
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 128/318 (40%), Gaps = 26/318 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D GL+ LT L F N IT FAGL L+ L+L
Sbjct: 102 QITDISANAFAGLAALTML-FLPGNNITGIPANVFAGLTALLVLNLSGNQLASIPADAFT 160
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV---------TDSGIAYLKGL 203
GL L++LN++ N IT + L LKSL +S +++ S + ++ L
Sbjct: 161 GLTALQTLNLQ-SNQITSISAAGFADLAALKSLGLSGNRLGSNLANAFTNQSALGFID-L 218
Query: 204 SISSVIFILCSMIIRLFCLHVF--------------LTSLQKLTLLNLEGCPVTAACLDS 249
S + + +L L L+ +T L L L++ G T+ S
Sbjct: 219 SNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASS 278
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+ L +L YL+L+ Q + F+ + +L L L N+ TD GL L L L
Sbjct: 279 FAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGL 338
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ L L L L LS Q+ S +GLT L S+ LS ++
Sbjct: 339 AGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRNQLTSIPAAA 398
Query: 370 LAGLSSLKSLNLDARQIT 387
+GL+ L L+LD T
Sbjct: 399 FSGLTLLNILSLDTNPFT 416
>gi|51850115|dbj|BAD42399.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 1035
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 176/402 (43%), Gaps = 33/402 (8%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 689
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L L SL ++ I D ++
Sbjct: 690 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELR-DTGIEDGGIE 747
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ T L+SL IS + ++D A L + + LT
Sbjct: 748 ALAANTVLRSLDISGNDLSDQSAAAL--------------------------AANRTLTS 781
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L GC +T L+ + SL L + + D G ++ SL+ LNL N IT +
Sbjct: 782 LKANGCGLTNDMAQQLARIRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNSITPQG 841
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L L+SL++ G GD G + L+G L L+L ++ S G R L+ L S
Sbjct: 842 LYPLALSRTLKSLDVSRIGCGDRGALLLSGNRALTSLKLGFNRISSEGARRLAANRTLVS 901
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
++L I + R LA L SLN+ ++ D AL LT LD+ R++
Sbjct: 902 LDLRGNTIDVAAARALANAEPLASLNVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRA 961
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
A L + L SL+I + G + + D +SLT+L+ N
Sbjct: 962 ARALADNPVLASLDISHNDIGPEGAQALADSASLTILDARAN 1003
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 134/303 (44%), Gaps = 51/303 (16%)
Query: 255 SLFYLNLNRC---QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
S+ +L+L+ C +S+ G +++ L L+L I + L +L SLNL
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARL-PLASLDLSDTGIGNRGAQALAASASLTSLNLSG 690
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
GIG G L L L++S + ++G + L+ +L S+ L TGI DG + LA
Sbjct: 691 NGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELRDTGIEDGGIEALA 750
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
+ L+SL++ ++D AAL + LT L G +T+ A L ++LR+LE+
Sbjct: 751 ANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGS 810
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQNC-----------NLTDKTLE------------LIS 468
+ DAGV I +SL LNLS+N + T K+L+ L+S
Sbjct: 811 NSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGCGDRGALLLS 870
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKP------------------------LKNLRSLTLES 504
G L SL + +RI+S G R L + L SL +
Sbjct: 871 GNRALTSLKLGFNRISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLNVSD 930
Query: 505 CKV 507
C++
Sbjct: 931 CRL 933
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 6/219 (2%)
Query: 294 CLVHLKGLT-NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
L L+ L ++ L+L C + + GL L L L L+LSDT +G+ G + L+
Sbjct: 622 SLADLRALPPSVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAAS 680
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+L S+NLS GI L + L +L++ A I + G AL S LT L+L
Sbjct: 681 ASLTSLNLSGNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELRDTG 740
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
I D G L LRSL+I G L+D + +LT L + C LT+ + ++
Sbjct: 741 IEDGGIEALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLAR 799
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ L +L V ++ I AG+ + +LRSL L +T
Sbjct: 800 IRSLRTLEVGSNSIGDAGVLTIARNASLRSLNLSRNSIT 838
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+ +L GL LESLN+ IGD G L +LK L + + +SG R L+ L
Sbjct: 144 RAIAYLAGLP-LESLNVAGAEIGDGGARLLAANPSLKSLNAASGGISASGARMLAESPTL 202
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------- 405
ES++L+ I D + LAG SL+ L + +TD G AL L LDL
Sbjct: 203 ESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDVGTRALALNPALVSLDLGNLVTET 262
Query: 406 -----------FGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNL 453
IT GA L ++L+SL + G L D GV+ + +LT LN+
Sbjct: 263 GNQVEQDGYDKTANNITAQGAWALAQNRSLKSLSVQGNDLCGDDGVRALARNRTLTSLNV 322
Query: 454 SQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+ N+T + + ++ L SL+V N + AG L ++L SL ++A
Sbjct: 323 AF-TNMTSASAKALADNPVLTSLSVRWNYGLDDAGAMELARSRSLTSLDARDTGMSA 378
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 139/342 (40%), Gaps = 48/342 (14%)
Query: 14 LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
L SR LT SLE RD G+ D ++ +A+ + L S+D+SG+D++D
Sbjct: 725 LASSRSLT--SLE-LRDT-----------GIEDGGIEALAAN-TVLRSLDISGNDLSDQS 769
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGG--LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L L SL N C +D L +R L L S N+I G+ A
Sbjct: 770 AAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLEVGS----NSIGDAGVLTIARNA 825
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L L+L R + GL L L+SL++ C D LSG L SL++ ++
Sbjct: 826 SLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGC-GDRGALLLSGNRALTSLKLGFNR 884
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
++ G L + + L L+L G + A +L+
Sbjct: 885 ISSEGARRL--------------------------AANRTLVSLDLRGNTIDVAAARALA 918
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L LN++ C+L D ++ +L L++ +N ++ L L SL++
Sbjct: 919 NAEPLASLNVSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALADNPVLASLDISH 978
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
IG EG L +L L+ ++G +G R L T +
Sbjct: 979 NDIGPEGAQALADSASLTILDARANRIGEAGARLLEANTRMR 1020
>gi|124009437|ref|ZP_01694114.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
gi|123984985|gb|EAY24943.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
Length = 966
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 38/227 (16%)
Query: 313 GIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
G GD E L L GL L+ L LS + S ++ L+ +E +NLS I+D L
Sbjct: 92 GYGDLWGIEDLQPLVGLTQLQTLNLSSNHI--SDIKVLANFPTMEKLNLSQNTIAD--LS 147
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
LAGL SLK+LNL+ Q D G L SL LT L L +++D A L+ KNLRSL
Sbjct: 148 PLAGLESLKTLNLNWNQTLDLG--TLPSLPNLTTLYLNSCQLSDIQA--LKQHKNLRSLY 203
Query: 429 ICGGGLTDAGV--------------KHIKDLSSL----TLLNLSQNCNLTDKTLELISGL 470
+ L D HI+D S L TL LS N N K L ++GL
Sbjct: 204 LRSNQLADLSPLTNLETLAYLRLDENHIEDFSPLASLQTLEALSLNKNRI-KDLAPLAGL 262
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L L ++ ++I S LKPL L+ LT+ +T N I+ +Q+
Sbjct: 263 ITLRKLYLNENKIIS-----LKPLAKLQKLTV--LTLTDNKIQDVQA 302
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 123/254 (48%), Gaps = 30/254 (11%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L +L LNL ++ + L+ ++ LNL++ ++D + + SLK LNL
Sbjct: 105 LVGLTQLQTLNLSSNHISD--IKVLANFPTMEKLNLSQNTIAD--LSPLAGLESLKTLNL 160
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
+N+ D L L L NL +L L+SC + D + L NL+ L L Q+
Sbjct: 161 NWNQTLD--LGTLPSLPNLTTLYLNSCQLSD--IQALKQHKNLRSLYLRSNQLAD----- 211
Query: 346 LSGLTNLESI---NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
LS LTNLE++ L I D S LA L +L++L+L+ +I D LA L L L
Sbjct: 212 LSPLTNLETLAYLRLDENHIEDFS--PLASLQTLEALSLNKNRIKD--LAPLAGLITLRK 267
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL---TLLNLSQNCNL 459
L L +I L+ L+ L + LTD ++ ++ L SL L+LSQN +
Sbjct: 268 LYLNENKIIS-----LKPLAKLQKLTVLT--LTDNKIQDVQALHSLLQLDTLDLSQNQIM 320
Query: 460 TDKTLELISGLTGL 473
L+ ++ LTGL
Sbjct: 321 DVSPLQSLARLTGL 334
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 131/306 (42%), Gaps = 47/306 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
L +E LN+ N I +D+ PL+GL +LK+L ++ ++ D G
Sbjct: 127 LANFPTMEKLNLS-QNTI--ADLSPLAGLESLKTLNLNWNQTLDLGT------------- 170
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
L SL LT L L C ++ + +L +L L L QL+D
Sbjct: 171 ---------------LPSLPNLTTLYLNSCQLSD--IQALKQHKNLRSLYLRSNQLAD-- 211
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ + +L L L N I D L L LE+L+L+ I D L L GL L+
Sbjct: 212 LSPLTNLETLAYLRLDENHIED--FSPLASLQTLEALSLNKNRIKD--LAPLAGLITLRK 267
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L++ ++ S L+ L+ L L + L+ I D ++ L L L +L+L QI D
Sbjct: 268 LYLNENKIIS--LKPLAKLQKLTVLTLTDNKIQD--VQALHSLLQLDTLDLSQNQIMD-- 321
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
++ L SL LT L L +I D L L+ L + +T+ V L L +
Sbjct: 322 VSPLQSLARLTGLGLGVNQIQD--ICPLAGLIELKILVLANNQITELPVHFFDKLHQLLV 379
Query: 451 LNLSQN 456
L L N
Sbjct: 380 LELENN 385
>gi|21674346|ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS]
gi|21647522|gb|AAM72753.1| Rab family protein [Chlorobium tepidum TLS]
Length = 1102
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 139/289 (48%), Gaps = 44/289 (15%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
+ ++ L L SL++ W SD+ PL L +L LQ+S +++TD IA
Sbjct: 97 ITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITD--IAP-------- 146
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
L SL+ LT L+L G ++ L +L SL L+L+ Q++
Sbjct: 147 ------------------LASLKSLTELSLSGNNISDIA--PLESLKSLTELSLSSNQIT 186
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D + + SL L+L N+I+D + L+ L +L L L I D + L L +
Sbjct: 187 D--IAPLASLKSLTELSLSSNQISD--IAPLESLKSLTELQLSRNQISD--IAPLESLKS 240
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L L+LS Q+ + + L+ L +L + LS ISD + L L+SL L L+ QIT
Sbjct: 241 LTELQLSSNQI--TDIAPLASLKSLTELQLSRNQISD--IAPLESLNSLSKLWLNGNQIT 296
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
D +A L SL LT L+L +ITD A L + K+L +L + ++D
Sbjct: 297 D--IAPLASLNSLTELELSSNQITD--IAPLASLKSLSTLWLSSNQISD 341
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 165/343 (48%), Gaps = 46/343 (13%)
Query: 190 SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS 249
+++TD I+ L L+ S++++ + I + L SL L++L L G ++
Sbjct: 73 NQITD--ISPLASLNSLSMLWLDRNQITDIAP----LASLNSLSMLWLFGNKISDIA--P 124
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L +L SL L L+ Q++D + + SL L+L N I+D + L+ L +L L+L
Sbjct: 125 LESLKSLTELQLSSNQITD--IAPLASLKSLTELSLSGNNISD--IAPLESLKSLTELSL 180
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
S I D + L L +L L LS Q+ S + L L +L + LS ISD +
Sbjct: 181 SSNQITD--IAPLASLKSLTELSLSSNQI--SDIAPLESLKSLTELQLSRNQISD--IAP 234
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
L L SL L L + QITD +A L SL LT L L +I+D A L + +L L +
Sbjct: 235 LESLKSLTELQLSSNQITD--IAPLASLKSLTELQLSRNQISD--IAPLESLNSLSKLWL 290
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-- 487
G +TD + + L+SLT L LS N +TD + ++ L L +L +S+++I+
Sbjct: 291 NGNQITD--IAPLASLNSLTELELSSN-QITD--IAPLASLKSLSTLWLSSNQISDIAPL 345
Query: 488 ---------------LRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ + PL +L SLT V N IKRL
Sbjct: 346 ASLESLSELSLSSNQISDISPLASLNSLT--GFDVRRNPIKRL 386
>gi|290982306|ref|XP_002673871.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087458|gb|EFC41127.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 529
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 13/209 (6%)
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL------RHLSGLTNL 352
K + NL L++ I D G+ L L LK L + ++ S G + + LTNL
Sbjct: 100 KLMPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNL 159
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
+ +SF + + +++L L L LN+ I TG+ + ++T L L++ G I
Sbjct: 160 D---ISFNSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGNNINC 215
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
GA L N KNL+ L+I L + G KHI + +L L++S N + + + IS L+
Sbjct: 216 KGALLLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHN-QILNGGAKAISSLSK 274
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
L L++SN I GL+++ KNL++LT
Sbjct: 275 LEILHISNCDIGCEGLQYIS--KNLKNLT 301
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 196/447 (43%), Gaps = 77/447 (17%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
+++I+ L ++D+S + + +SG+ LK L L+ ++C I G++ +R ++ L
Sbjct: 146 IEMISKFMKCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSYC-DIDATGIQFIRNMTCL 203
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
L+ NN I +G + L NL +LD+ C+
Sbjct: 204 IKLNISGNN-INCKGALLLSNLKNLQELDIASA-------------------------CL 237
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
+ K +S + NLK L IS +++ + G + +S
Sbjct: 238 KEEGAKHISRMDNLKFLSISHNQILNGGAKAI--------------------------SS 271
Query: 229 LQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L KL +L++ C + L +S L +L +++ DG + + +LKVL+
Sbjct: 272 LSKLEILHISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASMNNLKVLS--- 328
Query: 288 NEITDECL-----VHLKGLTNLESLNL----DSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
I + CL +L + NL LN+ D IG+ ++ L NL L ++ +
Sbjct: 329 --IAESCLGLLGVQYLSKMENLTYLNISDNIDDIFIGE----SINDLQNLTTLLYTNNSL 382
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALT-S 396
+S LT L ++N+ T ISD + L + L L +L D IT G+ ++ S
Sbjct: 383 SMDEAITISSLTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVKLISES 442
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ L L L G RI D G Y+ + ++LR L +C + D GV+ + + + L L +
Sbjct: 443 MIDLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVLVNCAPKKLRELLID 502
Query: 457 C--NLTDKTLELISGLTGLVSLNVSNS 481
C N+T K +LI + L S+ + N+
Sbjct: 503 CNENITSKGCKLIYSIPQLNSIYLENN 529
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 127/258 (49%), Gaps = 5/258 (1%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
LN++ C + G + + L LN+ N I + + L L NL+ L++ S + +EG
Sbjct: 182 LNVSYCDIDATGIQFIRNMTCLIKLNISGNNINCKGALLLSNLKNLQELDIASACLKEEG 241
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLK 377
+++ + NLK L +S Q+ + G + +S L+ LE +++S I L+ ++ L +L
Sbjct: 242 AKHISRMDNLKFLSISHNQILNGGAKAISSLSKLEILHISNCDIGCEGLQYISKNLKNLT 301
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
+++ G+ + S+ L L + + + G YL +NL L I + D
Sbjct: 302 EIDIGGNHFGMDGVIVIASMNNLKVLSIAESCLGLLGVQYLSKMENLTYLNI-SDNIDDI 360
Query: 438 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLK 495
+ + I DL +LT L + N D+ + IS LT L +LN+ ++ I+ + L L
Sbjct: 361 FIGESINDLQNLTTLLYTNNSLSMDEAIT-ISSLTQLTTLNIESTEISDVHIEILCSSLH 419
Query: 496 NLRSLTLESCKVTANDIK 513
+L +L ++ +T+ +K
Sbjct: 420 HLINLYADTNFITSWGVK 437
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 345 HLSGLTNLESINLSFT-GISDG----SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
H+ GLT SF+ ISD S+ KL + +L L++ I D+G+A L L
Sbjct: 77 HIHGLT------FSFSKAISDKTNLISIEKL--MPNLIHLDIYGSDIEDSGVACLCKLKE 128
Query: 400 LTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L L++ ++T G + K L +L+I L ++G+K +K L LT LN+S
Sbjct: 129 LKILNIGSNKLTSKGRGIEMISKFMKCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSY- 186
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516
C++ ++ I +T L+ LN+S + I G L LKNL+ L + S + K +
Sbjct: 187 CDIDATGIQFIRNMTCLIKLNISGNNINCKGALLLSNLKNLQELDIASACLKEEGAKHIS 246
Query: 517 SRD 519
D
Sbjct: 247 RMD 249
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTG-LTHLDL 405
+ NL +++ + I D + L L LK LN+ + ++T G + ++ LT+LD+
Sbjct: 102 MPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNLDI 161
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+ +SG L+ L L + + G++ I++++ L LN+S N N+ K
Sbjct: 162 SFNSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGN-NINCKGAL 219
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L+S L L L+++++ + G +H+ + NL+ L++ ++ K + S
Sbjct: 220 LLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISS 271
>gi|222630606|gb|EEE62738.1| hypothetical protein OsJ_17541 [Oryza sativa Japonica Group]
Length = 973
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 144/323 (44%), Gaps = 36/323 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+V S + L L+ LD + C +ISD G++H+ + +L L + +T G+ A
Sbjct: 649 NVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQ-TGLTDNGVMAI 707
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ LINL LDL L +L+ L +LE L+I W + IT+ L T+L L I
Sbjct: 708 SSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNI 766
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
S ++VT CL + T L LN+ C + + C
Sbjct: 767 SWTRVT---------------------------CLPILPT----LRCLNMSNCTIHSICN 795
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
L L L ++ + E FS I + L + + L L + NLE L
Sbjct: 796 GEFQVLIHLEKLIISAASFGNID-EVFSSILPSSLTYLDMSSCSSSNLYFLGNMRNLEHL 854
Query: 308 NLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDG 365
+L I + + + + NLK L LS+++V S L L+G + +L +++L+ T I D
Sbjct: 855 DLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDS 914
Query: 366 SLRKLAGLSSLKSLNLDARQITD 388
+L ++ + SL+ LNL I D
Sbjct: 915 ALLYISMMPSLRILNLSRTCIKD 937
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 343
G + E L +L L L L C + + L+G+ LK L+LS +++ +G+
Sbjct: 621 GHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGI 680
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+H++ + +LE +++S TG++D + ++ L +L+ L+L + TD L +L LT L HL
Sbjct: 681 KHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHL 740
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
D++G+ IT+ GA+ L F +L L I +T + L +L LN+S NC +
Sbjct: 741 DIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPI-----LPTLRCLNMS-NCTI 790
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 158/351 (45%), Gaps = 53/351 (15%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ V L G+ L+ L++ C+ I+D+ +K +
Sbjct: 624 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHI 683
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ + +L+ L +S + +TD+G+ ++ISS+I L LL+
Sbjct: 684 ASIESLEKLHVSQTGLTDNGV-----MAISSLI---------------------NLRLLD 717
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT----- 291
L G T L SL L L +L++ +++++G SL LN+ + +T
Sbjct: 718 LGGVRFTDKALRSLQVLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPIL 777
Query: 292 --------DECLVH------LKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSD 335
C +H + L +LE L + + G DE ++ +L L++S
Sbjct: 778 PTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILP-SSLTYLDMSS 836
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAAL 394
SS L L + NLE ++LS++ I ++ +A + +LK L+L ++T L L
Sbjct: 837 CS--SSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVL 894
Query: 395 T-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
++ LT L L +I DS Y+ +LR L + + D +K+ K+
Sbjct: 895 AGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKDERIKYSKE 945
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 160/332 (48%), Gaps = 38/332 (11%)
Query: 224 VFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLK 281
+L + + L +L L C V ++ + +LS + +L L+L+RC ++SD G + + I SL+
Sbjct: 631 AYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIESLE 690
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L++ +TD ++ + L NL L+L D+ L +L L L+ L++ +++ +
Sbjct: 691 KLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIWGSEITNE 750
Query: 342 GLRHLSGLTNLESINLSFTGIS----------------------DGSLRKLAGLSSLKSL 379
G L T+L +N+S+T ++ +G + L L L
Sbjct: 751 GASVLIAFTSLSFLNISWTRVTCLPILPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIIS 810
Query: 380 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
I + + L S LT+LD+ + + S +L N +NL L++ + +
Sbjct: 811 AASFGNIDEVFSSILPS--SLTYLDM--SSCSSSNLYFLGNMRNLEHLDLSYSRIISDAI 866
Query: 440 KHIKDLS-SLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNL 497
++I ++ +L L+LS N +T + L +++G + L +L++++++I + L ++ + +L
Sbjct: 867 EYIANIGMNLKFLSLS-NSEVTSQALCVLAGTVPSLTTLSLAHTKIDDSALLYISMMPSL 925
Query: 498 RSLTL-------ESCKVTANDIKRLQSRDLPN 522
R L L E K + ++ LQ + N
Sbjct: 926 RILNLSRTCIKDERIKYSKEEMMELQHQAKSN 957
>gi|322790910|gb|EFZ15576.1| hypothetical protein SINV_11426 [Solenopsis invicta]
Length = 526
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 152/302 (50%), Gaps = 34/302 (11%)
Query: 226 LTSLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK- 276
L + L LNL GC A C + SL LNL+ C Q++D + ++
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQE----YPSLTELNLSLCKQVTDTSLSRIAQY 284
Query: 277 IGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN------ 327
+ +L+ L LG N L+ GL L+ L+L SC + D G+ +L GL
Sbjct: 285 LKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADGN 344
Query: 328 --LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 382
L+ L L D Q + LRH+S G T L+SINLSF I+D ++ LA +SSL+ LNL
Sbjct: 345 LALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDSGVKHLARMSSLRELNLR 404
Query: 383 A-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 438
+ I+D G+A L + +T LD+ F +I D ++ + NL+SL + ++D G
Sbjct: 405 SCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEG 464
Query: 439 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 495
+ K K L L LN+ Q LTD+ L ++ + L +++ ++IT++GL + L
Sbjct: 465 ICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSGLERIMKLP 524
Query: 496 NL 497
L
Sbjct: 525 QL 526
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 144/319 (45%), Gaps = 75/319 (23%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA +L ++L G ++T++GL+ + L+ LD C +SD G+ H
Sbjct: 273 VTDTSLSRIAQYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAH 332
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLES 159
L GL N TA G A L L L+ C R+ L ++ G L+S
Sbjct: 333 LAGL-----------NRETADGNLA------LEHLSLQDCQRLSDEALRHVSLGFTTLKS 375
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMI 216
+N+ +C CITDS +K L+ +++L+ L + SC ++D G+AYL G I+S+ C I
Sbjct: 376 INLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKI 435
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
+H+ L NL+ L+L+ CQ+SD+G K +K
Sbjct: 436 GDQALVHI------SQGLFNLKS-------------------LSLSACQISDEGICKIAK 470
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELS 334
L +LE+LN+ C + D GL + + NLKC++L
Sbjct: 471 T-----------------------LHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLY 507
Query: 335 D-TQVGSSGLRHLSGLTNL 352
T++ +SGL + L L
Sbjct: 508 GCTKITTSGLERIMKLPQL 526
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 151/297 (50%), Gaps = 42/297 (14%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIA--- 198
LKG+ LE+LN+ C ITD G+TN L L +S C +VTD+ ++
Sbjct: 229 LKGVPNLEALNLSGCYNITD------IGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIA 282
Query: 199 -YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSL 250
YLK L + C I L + L+KL L+L C + A L+
Sbjct: 283 QYLKNL--EHLELGGCCNITNTGLL-LIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRE 339
Query: 251 SALG--SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLE 305
+A G +L +L+L CQ LSD+ S +LK +NL F ITD + HL +++L
Sbjct: 340 TADGNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVCITDSGVKHLARMSSLR 399
Query: 306 SLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTG 361
LNL SC I D G+ L G + L++S ++G L H+S GL NL+S++LS
Sbjct: 400 ELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQ 459
Query: 362 ISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 414
ISD + K+A L L++LN+ ++TD GL + S+ L +DL+G +IT SG
Sbjct: 460 ISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSG 516
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 125/245 (51%), Gaps = 38/245 (15%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 348
LKG+ NLE+LNL C I D G+ N LT L C +++DT + S ++L
Sbjct: 229 LKGVPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSL-SRIAQYLKN 287
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L +LE N++ TG+ L GL LK L+L + ++D G+A L L
Sbjct: 288 LEHLELGGCCNITNTGL----LLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADG 343
Query: 399 --GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTL 450
L HL L R++D ++ F L+S+ +C +TD+GVKH+ +SSL
Sbjct: 344 NLALEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVC---ITDSGVKHLARMSSLRE 400
Query: 451 LNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKV 507
LNL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C++
Sbjct: 401 LNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 460
Query: 508 TANDI 512
+ I
Sbjct: 461 SDEGI 465
>gi|427793023|gb|JAA61963.1| Putative f-box and leucine-rich repeat protein 14a, partial
[Rhipicephalus pulchellus]
Length = 372
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 142/290 (48%), Gaps = 31/290 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDF 88
+L +L L + D + IA L +DL G +DVT++GL HL NL+SL+
Sbjct: 82 SLTELNLSMCKQITDNSLGRIAQHLQGLERLDLGGCTDVTNTGL-HLIAWGLHNLRSLNL 140
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
C +SD G+ HL G++ N+AI G + L L L+ C ++
Sbjct: 141 RSCRGVSDPGISHLAGINP--------NSAI---------GTLRLESLCLQDCQKLTDDA 183
Query: 149 VNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL G
Sbjct: 184 LRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGS 243
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLN 262
IS++ C + LH L +L L+L CPV+ + ++ +LG L L+L
Sbjct: 244 RISTLDVSFCDKVGDQGLLHAS-QGLFQLRSLSLNACPVSDDGIGRVARSLGDLQTLHLG 302
Query: 263 RC-QLSDDGCEKFS-KIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNL 309
+C +++D G + + L+ ++L G +IT L L L NL LNL
Sbjct: 303 QCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNLGVLNL 352
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 156/347 (44%), Gaps = 56/347 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLES 159
RG+ + LS +R+ QG+ NL L++ C + +N ++ + L
Sbjct: 32 RGIRRVQVLSLKRSLRDVIQGVP------NLESLNMIGCFNLTDAWLNHAFVQDVHSLTE 85
Query: 160 LNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMII 217
LN+ C ITD+ + ++ L L+ L + C+ VT++G
Sbjct: 86 LNLSMCKQITDNSLGRIAQHLQGLERLDLGGCTDVTNTG--------------------- 124
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSLFY--LNLNRCQLSD 268
LH+ L L LNL C + A ++ SA+G+L L L CQ
Sbjct: 125 ----LHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLESLCLQDCQKLT 180
Query: 269 DGCEKFSKIG--SLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT- 323
D +F IG L+ LNL F +TD L H + L LNL SC I D GL L
Sbjct: 181 DDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDNISDLGLAYLAE 240
Query: 324 GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLN 380
G + L++S +VG GL H S GL L S++L+ +SD + ++A L L++L+
Sbjct: 241 GGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLQTLH 300
Query: 381 L-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNL 424
L ++TD GL+ + L L +DL+G +IT G L NL
Sbjct: 301 LGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNL 347
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 154/327 (47%), Gaps = 46/327 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ NL+SL+ C ++D L H ++ + +LT L+ IT + A
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIA------ 103
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKV 192
+ L LE L++ C +T++ + ++ GL NL+SL + SC V
Sbjct: 104 -----------------QHLQGLERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGV 146
Query: 193 TDSGIAYLKGLSISSVIFIL---------CSMIIRLFCLHVFLTSLQKLTLLNLEGCP-V 242
+D GI++L G++ +S I L C + L LQ L LNL C V
Sbjct: 147 SDPGISHLAGINPNSAIGTLRLESLCLQDCQKLTD-DALRFISIGLQDLRSLNLSFCASV 205
Query: 243 TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGS-LKVLNLGF-NEITDECLVHL- 298
T A L + + L LNL C +SD G ++ GS + L++ F +++ D+ L+H
Sbjct: 206 TDAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHAS 265
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLSG-LTNLESI 355
+GL L SL+L++C + D+G+ + L +L+ L L +V GL ++ L L I
Sbjct: 266 QGLFQLRSLSLNACPVSDDGIGRVARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCI 325
Query: 356 NL-SFTGISDGSLRKLAGLSSLKSLNL 381
+L T I+ L KL L +L LNL
Sbjct: 326 DLYGCTKITTVGLEKLMQLPNLGVLNL 352
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 346 LSGLTNLESINL-SFTGISDGSLRK--LAGLSSLKSLNLDA-RQITDTGLAALTS-LTGL 400
+ G+ NLES+N+ ++D L + + SL LNL +QITD L + L GL
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 401 THLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDL---SSLTLLNLS 454
LDL G +T++G + NLRSL + G++D G+ H+ + S++ L L
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 455 ----QNCN-LTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
Q+C LTD L IS GL L SLN+S + +T AGL+H + LR L L SC
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSC 227
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 32/245 (13%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVN---------LTGLCNLKCLELSDTQVGSSGLRHLSG 348
++G+ NLESLN+ C + +N LT L C +++D +G +HL G
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIA-QHLQG 108
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALT-----SLTGL 400
L E ++L T +++ L +A GL +L+SLNL + R ++D G++ L S G
Sbjct: 109 L---ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGT 165
Query: 401 THLDLFG----ARITDSGAAYLR-NFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNL 453
L+ ++TD ++ ++LRSL + C +TDAG+KH ++ L LNL
Sbjct: 166 LRLESLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCAS-VTDAGLKHAARMARLRELNL 224
Query: 454 SQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 510
N++D L L G + + +L+VS ++ GL H + L LRSL+L +C V+ +
Sbjct: 225 RSCDNISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDD 284
Query: 511 DIKRL 515
I R+
Sbjct: 285 GIGRV 289
>gi|428225640|ref|YP_007109737.1| hypothetical protein GEI7407_2206 [Geitlerinema sp. PCC 7407]
gi|427985541|gb|AFY66685.1| leucine-rich repeat-containing protein [Geitlerinema sp. PCC 7407]
Length = 504
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 175/414 (42%), Gaps = 87/414 (21%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLI 131
L D S L SL + + + L LR LS+L +L S+ +T G +
Sbjct: 86 LTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTDVTVLGTLGTLQAL 145
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
NL R + L L+GL +L +L + W T +D+ L L NL L +S S+
Sbjct: 146 NL------RGNPVRD-LRPLQGLQRLHTLTLGWS---TVTDLSTLPTLPNLHQLDLSGSQ 195
Query: 192 VTD----SGIAYLKGLSISS--VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
V D + L+ L++S+ + I + L L + +L ++T+ P +
Sbjct: 196 VGDIRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTI------PASMG 249
Query: 246 CLDSLS----ALGSLFY----LNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITD-- 292
L+SL+ A+ SL + L R L+ + + I S L+ L+L FN+ITD
Sbjct: 250 KLESLNLANNAIASLQFGGQIPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLG 309
Query: 293 -------------------ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
L L GLT L++L+L I D + L GL NL+ L L
Sbjct: 310 PLASLGAIRVLKISGNRPISDLRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVL 367
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISD--------------------GSLRKLAGL 373
S Q+ L LSGL L + + ISD S+R LA L
Sbjct: 368 SGNQIQQ--LESLSGLNRLSYLAIGGNQISDLRAIAALYSLQTLMLDSNRITSVRPLASL 425
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
LK L L QITD A L +LTGLT L L RIT+ A L NLR L
Sbjct: 426 GQLKVLTLGNNQITDP--APLAALTGLTVLQLPQNRITNFDA--LATLTNLRIL 475
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 179/380 (47%), Gaps = 43/380 (11%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS 206
GL +L L+ L L + SD++PLS L NL++L +S + +TD + L L
Sbjct: 85 GLTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTD--VTVLGTLGTL 142
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
+ + + + L L LQ+L L L VT L +L L +L L+L+ Q+
Sbjct: 143 QALNLRGNPVRDLRPLQ----GLQRLHTLTLGWSTVTD--LSTLPTLPNLHQLDLSGSQV 196
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN--------------LDSC 312
D + L+ LNL N I+ L + L +L+ N L+S
Sbjct: 197 GD--IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESL 254
Query: 313 GIGDEGLVNLT---GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ + + +L + L+ L L+ Q+ + +R ++ L+ ++LSF I+D L
Sbjct: 255 NLANNAIASLQFGGQIPALRRLSLASNQL--TEVRAIASQPQLQELDLSFNQITD--LGP 310
Query: 370 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
LA L +++ L + R I+D L L LT L LDL A I D LR +NL +L
Sbjct: 311 LASLGAIRVLKISGNRPISD--LRPLAGLTTLQALDLSEASIRD--ITPLRGLRNLETLV 366
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G + ++ + L+ L+ L + N ++D L I+ L L +L + ++RITS +
Sbjct: 367 LSGNQIQQ--LESLSGLNRLSYLAIGGN-QISD--LRAIAALYSLQTLMLDSNRITS--V 419
Query: 489 RHLKPLKNLRSLTLESCKVT 508
R L L L+ LTL + ++T
Sbjct: 420 RPLASLGQLKVLTLGNNQIT 439
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 139/308 (45%), Gaps = 56/308 (18%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L L +L L L+L LSD S + +L+ L+L + +TD + L L L++
Sbjct: 89 LSPLVSLPQLTGLSLYNSSLSD--LRPLSSLPNLRALDLSYANLTDVTV--LGTLGTLQA 144
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
LNL + D L L GL L L L + V + L L L NL ++LS + + D
Sbjct: 145 LNLRGNPVRD--LRPLQGLQRLHTLTLGWSTV--TDLSTLPTLPNLHQLDLSGSQVGD-- 198
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGA-------RITD 412
+R LA L++LNL A +I+ L A+ SL LT + + + + +
Sbjct: 199 IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLAN 258
Query: 413 SGAAYLR---NFKNLRSLEICGGGLT--------------DAGVKHIKDLSSLT------ 449
+ A L+ LR L + LT D I DL L
Sbjct: 259 NAIASLQFGGQIPALRRLSLASNQLTEVRAIASQPQLQELDLSFNQITDLGPLASLGAIR 318
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509
+L +S N ++D L ++GLT L +L++S A +R + PL+ LR+ LE+ ++
Sbjct: 319 VLKISGNRPISD--LRPLAGLTTLQALDLSE-----ASIRDITPLRGLRN--LETLVLSG 369
Query: 510 NDIKRLQS 517
N I++L+S
Sbjct: 370 NQIQQLES 377
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 75 IHLKDCSNLQSLDFN------FCIQISDGGLEHLRGLSN-LTSLSF-------RR----N 116
I L +L+SLD I S G LE L +N + SL F RR +
Sbjct: 221 IALPAMPSLRSLDLENNALTRVTIPASMGKLESLNLANNAIASLQFGGQIPALRRLSLAS 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKP 175
N +T ++A A L +LDL + +L L L ++ + K SD++P
Sbjct: 281 NQLTE--VRAIASQPQLQELDLS-----FNQITDLGPLASLGAIRVLKISGNRPISDLRP 333
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
L+GLT L++L +S + + D I L+GL + + + I +L L + L +L+ L
Sbjct: 334 LAGLTTLQALDLSEASIRD--ITPLRGLRNLETLVLSGNQIQQLESL----SGLNRLSYL 387
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
+ G ++ L +++AL SL L L+ +++ + +G LKVL LG N+ITD
Sbjct: 388 AIGGNQISD--LRAIAALYSLQTLMLDSNRIT--SVRPLASLGQLKVLTLGNNQITDPA- 442
Query: 296 VHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSS 341
L LT L L L I + + L LT NL+ L L + V
Sbjct: 443 -PLAALTGLTVLQLPQNRITNFDALATLT---NLRILGLWENPVSPP 485
>gi|290979250|ref|XP_002672347.1| predicted protein [Naegleria gruberi]
gi|284085923|gb|EFC39603.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 32/280 (11%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
FL ++ ++T+ N P A + L A+ L L+++ ++ +G ++ +L L+
Sbjct: 76 FLDNIMEVTVEN----PGLIADVRFLQAVKKLTRLSIDYNRVGVEGASFIGEMKNLTSLS 131
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ FN I E + L NL SL ++ +G EG +++ L L CL++S +G G +
Sbjct: 132 ILFNGIGPEGAKSISKLENLTSLFINVNQLGSEGTKSISELKQLTCLDISGNHLGPEGTK 191
Query: 345 HLSGLTNLES------------------------INLSFTGISDGSLRKLAGLSSLKSLN 380
++ LT L +N+S+ I + L+ + L +L
Sbjct: 192 YIGKLTQLTQLIICNNEIYSERLKFIGELRQLTILNVSYNYIDSEGAKYLSEMKQLTTLR 251
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 439
+D+ I G ++ +L LT+L++ I D G + KNL+ L G+ D G
Sbjct: 252 IDSNNIGPEGAKSICTLQNLTNLNVDSNAIGDEGILSISEKMKNLKYLNASMNGIGDEGA 311
Query: 440 KHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNV 478
+ I ++ LT LN+S CN + + L+L G+ LV L +
Sbjct: 312 QSILSMTQLTNLNIS--CNKIGENVLKLFGGMKQLVILEI 349
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%)
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
+ L L++ +N + E + + NL SL++ GIG EG +++ L NL L ++
Sbjct: 100 VKKLTRLSIDYNRVGVEGASFIGEMKNLTSLSILFNGIGPEGAKSISKLENLTSLFINVN 159
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
Q+GS G + +S L L +++S + + + L+ L L + +I L +
Sbjct: 160 QLGSEGTKSISELKQLTCLDISGNHLGPEGTKYIGKLTQLTQLIICNNEIYSERLKFIGE 219
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L LT L++ I GA YL K L +L I + G K I L +LT LN+ N
Sbjct: 220 LRQLTILNVSYNYIDSEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLNVDSN 279
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
+ L + + L LN S + I G + + + L +L + K+ N +K
Sbjct: 280 AIGDEGILSISEKMKNLKYLNASMNGIGDEGAQSILSMTQLTNLNISCNKIGENVLK 336
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
G MK L SL+I + N I K +S L NL SL I+ +++ G + L
Sbjct: 122 GEMKNLTSLSILF-NGIGPEGAKSISKLENLTSLFINVNQLGSEGTKSISELK------- 173
Query: 212 LCSMIIRLFCLHV-----------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
+L CL + ++ L +LT L + + + L + L L LN
Sbjct: 174 ------QLTCLDISGNHLGPEGTKYIGKLTQLTQLIICNNEIYSERLKFIGELRQLTILN 227
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
++ + +G + S++ L L + N I E + L NL +LN+DS IGDEG++
Sbjct: 228 VSYNYIDSEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTNLNVDSNAIGDEGIL 287
Query: 321 NLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
+++ + NLK L S +G G + + +T L ++N+S I + L+ G+ L
Sbjct: 288 SISEKMKNLKYLNASMNGIGDEGAQSILSMTQLTNLNISCNKIGENVLKLFGGMKQL 344
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 3/260 (1%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ 230
+D++ L + L L I ++V G +++ + + + IL + I + + L+
Sbjct: 92 ADVRFLQAVKKLTRLSIDYNRVGVEGASFIGEMKNLTSLSILFNGIGPEGAKSI--SKLE 149
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
LT L + + + S+S L L L+++ L +G + K+ L L + NEI
Sbjct: 150 NLTSLFINVNQLGSEGTKSISELKQLTCLDISGNHLGPEGTKYIGKLTQLTQLIICNNEI 209
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
E L + L L LN+ I EG L+ + L L + +G G + + L
Sbjct: 210 YSERLKFIGELRQLTILNVSYNYIDSEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQ 269
Query: 351 NLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
NL ++N+ I D G L + +LK LN I D G ++ S+T LT+L++ +
Sbjct: 270 NLTNLNVDSNAIGDEGILSISEKMKNLKYLNASMNGIGDEGAQSILSMTQLTNLNISCNK 329
Query: 410 ITDSGAAYLRNFKNLRSLEI 429
I ++ K L LEI
Sbjct: 330 IGENVLKLFGGMKQLVILEI 349
>gi|255523038|ref|ZP_05390010.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513153|gb|EET89421.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 421
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 22/223 (9%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
+L+ L L + +I D + LKGLTNL+ L L I D + L GL NL+ LEL Q+
Sbjct: 191 NLQSLTLTYCQIED--ISPLKGLTNLKELMLYDDNITD--ISPLKGLTNLEFLELYGNQI 246
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
+ + L GLT L+ I+L I D +L L LS+L+ LNL +ITD +++L LT
Sbjct: 247 --TDIPSLEGLTKLKDIDLGNNKIHDITL--LRELSNLQELNLVYNKITD--ISSLKELT 300
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L LDL I+D + L NL+SL + +TD + +K L++L L L N N
Sbjct: 301 NLNSLDLDNNNISD--ISPLEKLSNLKSLSLGSNKITD--ISSLKGLTNLNSLVLDDN-N 355
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+TD IS L GL +LN N + S + + PL+ L +L+
Sbjct: 356 ITD-----ISPLKGLTNLNFLN--LGSNKISDISPLEGLTNLS 391
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 124/251 (49%), Gaps = 23/251 (9%)
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGL 325
EK +I K N E +++ +V + ++ D + + N+T L
Sbjct: 108 EKNKQIKEGKTFNFKIKETSEKPIVFKDSVFERLIRNKIQVNKPDWETLNKSDVENITEL 167
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
C SD + + + GL NL+S+ L++ I D + L GL++LK L L
Sbjct: 168 MEQNCGIKSDNTIKY--INGIEGLVNLQSLTLTYCQIED--ISPLKGLTNLKELMLYDDN 223
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445
ITD ++ L LT L L+L+G +ITD + L L+ +++ + D + +++L
Sbjct: 224 ITD--ISPLKGLTNLEFLELYGNQITDIPS--LEGLTKLKDIDLGNNKIHDITL--LREL 277
Query: 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
S+L LNL N +TD + + LT L SL++ N+ I + + L+ L NL+SL+L S
Sbjct: 278 SNLQELNLVYN-KITD--ISSLKELTNLNSLDLDNNNI--SDISPLEKLSNLKSLSLGSN 332
Query: 506 KVTANDIKRLQ 516
K+T DI L+
Sbjct: 333 KIT--DISSLK 341
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 16/163 (9%)
Query: 50 DVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
D+ + +G + L +DL + + D L L++ SNLQ L+ + +I+D + L+ L+NL
Sbjct: 248 DIPSLEGLTKLKDIDLGNNKIHDITL--LRELSNLQELNLVYN-KITD--ISSLKELTNL 302
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
SL NN ++ + L +L L + T I LKGL L SL + N
Sbjct: 303 NSLDLDNNNISDISPLEKLSNLKSL-SLGSNKITDISS----LKGLTNLNSLVLDDNNI- 356
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
+D+ PL GLTNL L + +K++D I+ L+GL+ S +++
Sbjct: 357 --TDISPLKGLTNLNFLNLGSNKISD--ISPLEGLTNLSTLWL 395
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 47/162 (29%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK---------------- 125
NLQSL +C QI D + L+GL+NL L +N +K
Sbjct: 191 NLQSLTLTYC-QIED--ISPLKGLTNLKELMLYDDNITDISPLKGLTNLEFLELYGNQIT 247
Query: 126 ---AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------ 170
+ GL L +DL +IH + L+ L L+ LN+ + N ITD
Sbjct: 248 DIPSLEGLTKLKDIDLGN-NKIHD-ITLLRELSNLQELNLVY-NKITDISSLKELTNLNS 304
Query: 171 --------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204
SD+ PL L+NLKSL + +K+TD I+ LKGL+
Sbjct: 305 LDLDNNNISDISPLEKLSNLKSLSLGSNKITD--ISSLKGLT 344
>gi|168702037|ref|ZP_02734314.1| leucine-rich repeat-containing protein typical subtype [Gemmata
obscuriglobus UQM 2246]
Length = 415
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 145/326 (44%), Gaps = 48/326 (14%)
Query: 194 DSGIAYLKGLSISSVIFIL-----CSMIIRLFCLHVF----LTSLQKLTLLNLEG-CPVT 243
D+ A L+GL IS +F + + F H T ++++ LL++ G P
Sbjct: 72 DTWEAPLRGL-ISGPVFRRGFVDEVKVEAKQFLQHAHRIFDATPVRRVHLLDVGGNLPAV 130
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
C LS L +L + + + +G+L+VL+LG N + D+ + HL G N
Sbjct: 131 MQC-PYLSRLSALTVYAQHASEPLARAVARSPHLGALRVLHLGRNRLADDAVEHLAGSPN 189
Query: 304 ---LESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSG---LTNLES 354
LE L+L IG+ G + L G L NL+ LEL + ++G G L+G LT+L +
Sbjct: 190 LPALEELDLSENEIGETGALALAGSPHLGNLRRLELRENRLGPGGAEALAGSDRLTSLRT 249
Query: 355 INLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
+ L I L LA L ++ L+L ++T TGL A + G R
Sbjct: 250 LGLGENEIGTPRLLSLARPHALLTVPVLDLTMNELTHTGLQA-----------ILGRRAA 298
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
D A L L + L DAG + H L+ LT L L+ +C + D+ + ++
Sbjct: 299 DHTAI------RLEELHLGSNTLNDAGAVVLAHSPHLAGLTALTLT-SCGIGDEGVRALA 351
Query: 469 GLTGLVS---LNVSNSRITSAGLRHL 491
L L++SN+ I G R L
Sbjct: 352 NSPHLERVDLLDLSNNPIGETGFRAL 377
>gi|290995979|ref|XP_002680560.1| predicted protein [Naegleria gruberi]
gi|284094181|gb|EFC47816.1| predicted protein [Naegleria gruberi]
Length = 263
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++ + L L +++ Q+ G++++S + L S+N+S I D + ++ + L SLN+
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+I++ G+ L+ + LT L++ RI+D A Y+ K L SL I + D GVK+
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKY 245
Query: 442 IKDLSSLTLLNLSQNCN 458
I ++ LT L++ N N
Sbjct: 246 ISEMKQLTSLDIGDNPN 262
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
++ + L SLN+ QI G+ ++ + L L++ I D GA Y+ K L SL I
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+++ GVK++ ++ LT LN+ N ++D+ + IS + L+SLN+ + I G++
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVN-RISDEEAKYISEMKQLISLNIGYNEIGDKGVK 244
Query: 490 HLKPLKNLRSLTL 502
++ +K L SL +
Sbjct: 245 YISEMKQLTSLDI 257
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 72/131 (54%)
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ L LN+ N+I E + ++ + L SLN+ IGD+G ++ + L L +
Sbjct: 127 SEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIY 186
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
D ++ + G+++LS + L S+N+ ISD + ++ + L SLN+ +I D G+ +
Sbjct: 187 DNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYI 246
Query: 395 TSLTGLTHLDL 405
+ + LT LD+
Sbjct: 247 SEMKQLTSLDI 257
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
V ++ + +S + L S+N++ I ++ ++ + L SLN+ +I D G ++ +
Sbjct: 118 VKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEM 177
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
LT L+++ I++ G YL K L SL I ++D K+I ++ L LN+ N
Sbjct: 178 KQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYN- 236
Query: 458 NLTDKTLELISGLTGLVSLNV 478
+ DK ++ IS + L SL++
Sbjct: 237 EIGDKGVKYISEMKQLTSLDI 257
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 68/129 (52%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ + I EG+ ++ + L L +S+ ++G G +++S + L S+N+
Sbjct: 129 MKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIYDN 188
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
IS+ ++ L+ + L SLN+ +I+D ++ + L L++ I D G Y+
Sbjct: 189 EISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISE 248
Query: 421 FKNLRSLEI 429
K L SL+I
Sbjct: 249 MKQLTSLDI 257
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 72/133 (54%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F++ +++LT LN+ + + +S + L LN++ ++ D G + S++ L LN
Sbjct: 125 FISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLN 184
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ NEI++E + +L + L SLN+ I DE ++ + L L + ++G G++
Sbjct: 185 IYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVK 244
Query: 345 HLSGLTNLESINL 357
++S + L S+++
Sbjct: 245 YISEMKQLTSLDI 257
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
L + + + ++ K L SL I + GVK+I ++ L LN+S+N + DK
Sbjct: 113 LLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISEN-EIGDKGA 171
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524
+ IS + L SLN+ ++ I++ G+++L +K L SL + +++ + K + ++ L+
Sbjct: 172 KYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYIS--EMKQLI 229
Query: 525 S 525
S
Sbjct: 230 S 230
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ +++L LN+ + +S + L LN+ ++S++G + S++ L LN
Sbjct: 149 YISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLN 208
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+G N I+DE ++ + L SLN+ IGD+G+ ++ + L L++ D
Sbjct: 209 IGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIGD 259
>gi|168703296|ref|ZP_02735573.1| hypothetical protein GobsU_27441 [Gemmata obscuriglobus UQM 2246]
Length = 635
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 111/254 (43%), Gaps = 39/254 (15%)
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
+DD F+ I ++ + + ++T L HL L+ L++L +DSC + + + LT
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPV--DSIAPLTACP 285
Query: 327 NLKCLELSDTQ-------VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
NL L ++ V +G L LTNL + L + I +LR+LA L L+SL
Sbjct: 286 NLTELVITAEAGTERRAVVNDTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSL 345
Query: 380 NL---DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
L + I+ T LA LT L L L L I Y+ + LR+L + G D
Sbjct: 346 ELMLFWGQHISGTDLAELTGLLELEKLTLHP--IPPWALEYIGPLRTLRTLTLSLFGEGD 403
Query: 437 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
+ +H+ L++L L L+ +T L HL+ L++
Sbjct: 404 SEFRHLAQLTNLCWLKLT-------------------------GPAVTDCALGHLRTLRS 438
Query: 497 LRSLTLESCKVTAN 510
LR+L + VTA
Sbjct: 439 LRTLHISESAVTAT 452
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 50/274 (18%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
TD +++ + + ++ ++I+ VT +G+ +L LS
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLS------------------------ 263
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
KL L ++ CPV + + L+A +L L + ++ G E+ + V+N
Sbjct: 264 --KLKTLEIDSCPVDS--IAPLTACPNLTELVIT----AEAGTERRA------VVN---- 305
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRH 345
D L+ LTNL L LD C IG + L L L L+ LEL + + L
Sbjct: 306 ---DTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSLELMLFWGQHISGTDLAE 362
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+GL LE + L I +L + L +L++L L D+ L LT L L L
Sbjct: 363 LTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLFGEGDSEFRHLAQLTNLCWLKL 420
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
G +TD +LR ++LR+L I +T G
Sbjct: 421 TGPAVTDCALGHLRTLRSLRTLHISESAVTATGA 454
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 90/222 (40%), Gaps = 23/222 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF------RR 115
V ++ DVT +GL HL S L++L+ + C S + L NLT L R
Sbjct: 244 VRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS---IAPLTACPNLTELVITAEAGTER 300
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK--WCNCITDSDM 173
+ G L NL +L L+ C L L L +L SL + W I+ +D+
Sbjct: 301 RAVVNDTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSLELMLFWGQHISGTDL 360
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF----CLHVFLTSL 229
L+GL L+ L + + + Y+ L L ++ + LF L L
Sbjct: 361 AELTGLLELEKLTL--HPIPPWALEYIGPLR------TLRTLTLSLFGEGDSEFRHLAQL 412
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
L L L G VT L L L SL L+++ ++ G
Sbjct: 413 TNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATGA 454
>gi|290975580|ref|XP_002670520.1| predicted protein [Naegleria gruberi]
gi|284084080|gb|EFC37776.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 2/243 (0%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT L++ + + L +L L + L +G + S++ L +L++ N
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 289 EITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
I DE + + + + L +L++ GI ++GLV L + NLK L D Q+ + +S
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
+ + +++S+ ++ L+ + + L L L IT + ++ L LT L++
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISE 180
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
I + G Y+ K L L+I G+ GV I ++ LT L++ N + ++ L ++
Sbjct: 181 NEIRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNP-IPEEALRIL 239
Query: 468 SGL 470
G+
Sbjct: 240 DGM 242
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 7/250 (2%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L L++ N I D + + GL NL +L + +G G +++ L L L++S ++
Sbjct: 3 QLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHNRI 62
Query: 339 GSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
G++ +S + L ++++SF GIS+ L L + +LK L Q++ ++ +
Sbjct: 63 RDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKM 122
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
+T LD+ + + K L L + G+T V+ I L LT+LN+S+N
Sbjct: 123 KQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISEN- 181
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+ ++ + ISGL L L++SN+ I G+ + + L L+ + N I
Sbjct: 182 EIRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLS-----IYNNPIPEEAL 236
Query: 518 RDLPNLVSFR 527
R L + FR
Sbjct: 237 RILDGMKQFR 246
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 102/203 (50%), Gaps = 2/203 (0%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L +L++ S IGD G + + GL NL L++ + +G +G + +S L L +++S
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 361 GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
I D ++ ++ + L +L++ I++ GL L + L L + +++ A +
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
K + L+I + +K I ++ L L L +N +T +E+IS L L LN+S
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKN-GITSHQVEIISQLKQLTVLNIS 179
Query: 480 NSRITSAGLRHLKPLKNLRSLTL 502
+ I + G+ ++ LK L L +
Sbjct: 180 ENEIRNEGVVYISGLKQLTELDI 202
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 122/272 (44%), Gaps = 32/272 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I DGG + GL NL +L N+ + G K+ + L L LD+ G+ ++
Sbjct: 13 RIGDGGAMLIGGLKNLITLQIYENH-LGPNGAKSISELKQLTILDISHNRIRDEGVKSIS 71
Query: 153 GLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
M +L +L+I + I++ + PL + NLK L D ++ + +IS
Sbjct: 72 EKMDQLTNLDISFVG-ISEKGLVPLVEMKNLKILAF-----YDCQLSTKQAETISK---- 121
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
++++T L++ L S+ + L L L + ++
Sbjct: 122 -----------------MKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQV 164
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
E S++ L VLN+ NEI +E +V++ GL L L++ + GIG EG++++ + L L
Sbjct: 165 EIISQLKQLTVLNISENEIRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKL 224
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
+ + + LR L G+ + TGIS
Sbjct: 225 SIYNNPIPEEALRILDGMKQFRQL---VTGIS 253
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 10/238 (4%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
GG + + GL L +L I + N + + K +S L L L IS +++ D G+ SI
Sbjct: 17 GGAMLIGGLKNLITLQI-YENHLGPNGAKSISELKQLTILDISHNRIRDEGVK-----SI 70
Query: 206 SSVIFILCSMIIRLFCLH----VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
S + L ++ I + V L ++ L +L C ++ +++S + + L++
Sbjct: 71 SEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDI 130
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
+ +++ + ++ L L L N IT + + L L LN+ I +EG+V
Sbjct: 131 SYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVY 190
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
++GL L L++S+ +G G+ + +T L +++ I + +LR L G+ + L
Sbjct: 191 ISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 33/163 (20%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + I+ + L ++D+S +++ GL+ L + NL+ L F C Q+S E +
Sbjct: 62 IRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDC-QLSTKQAETIS 120
Query: 104 GLSNLTSLSFRR---NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ +T L NN I +K+ + L+KL L +
Sbjct: 121 KMKQITELDISYNLTNNEI----LKSIGEMKQLIKLYLVK-------------------- 156
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
N IT ++ +S L L L IS +++ + G+ Y+ GL
Sbjct: 157 -----NGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGL 194
>gi|255525367|ref|ZP_05392306.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296187977|ref|ZP_06856369.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255510938|gb|EET87239.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296047103|gb|EFG86545.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 660
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 159/326 (48%), Gaps = 46/326 (14%)
Query: 125 KAFAGLIN-----LVKLDLERCTRI-------HGGLVNLKGLMKLESLNIKWCNCITDSD 172
KA IN L+K D+ + T + H + ++ GL L +L I SD
Sbjct: 338 KAIRATINKPTGELLKSDVNQITELDVSIINEHTDIKDISGLENLTNLQILALTDTEVSD 397
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+ PL LTNL+ L + C++V+D I+ LK L+ + + C+ + + L LT+LQKL
Sbjct: 398 LSPLKNLTNLQKLNLRCAQVSD--ISPLKYLTNLQNLNLWCAQVSDISPLK-DLTNLQKL 454
Query: 233 --------------TLLNLEGCPV---TAACLDSLSALGSLFYLNLNRCQLSD-DGCEKF 274
L NL+ + + ++ L L +L LNL+R Q+SD G +
Sbjct: 455 DLHIPQISDTSALKNLTNLQQLSLQYTQVSHINGLENLTNLQQLNLDRTQVSDISGLKDL 514
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+ + L + N + I+ LK LTNL+ L+L S + D + L L NL+ L+L+
Sbjct: 515 TNLQKLNLNNNQVSNIS-----PLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLN 567
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ QV S + L LTNL+ + L+ ISD + L L +L+ L L QI+D ++ L
Sbjct: 568 NNQV--SDVSPLKYLTNLQDLLLNVNQISD--ISPLKDLINLQGLYLGINQISD--ISPL 621
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRN 420
L L L+L +++D+ L+N
Sbjct: 622 KYLINLRELNLKHTQVSDADKQSLKN 647
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 287 FNEITD-ECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGL--CNLKCLELSDTQVGSSG 342
NE TD + + L+ LTNL+ L L + D L NLT L NL+C ++SD
Sbjct: 367 INEHTDIKDISGLENLTNLQILALTDTEVSDLSPLKNLTNLQKLNLRCAQVSD------- 419
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ L LTNL+++NL +SD + L L++L+ L+L QI+DT +AL +LT L
Sbjct: 420 ISPLKYLTNLQNLNLWCAQVSD--ISPLKDLTNLQKLDLHIPQISDT--SALKNLTNLQQ 475
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L L +++ L N NL+ L + ++D + +KDL++L N
Sbjct: 476 LSLQYTQVSHING--LENLTNLQQLNLDRTQVSD--ISGLKDLTNLQ---KLNLNNNQVS 528
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ + LT L L++S+++++ + LK L NL+ L L + +V+
Sbjct: 529 NISPLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQVS 572
>gi|46445832|ref|YP_007197.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399473|emb|CAF22922.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 329
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL+ C ++ GL L+ L+ L+ LN+K C+ +TD + L L L+ L +
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQHLDL 316
Query: 188 S-CSKVTDSGIAY 199
C+ +TD+G+A+
Sbjct: 317 DGCNNLTDAGLAH 329
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSL 367
D+ + D L+ L NLK L+L + + GL HL+ L L+ +NLS ++D L
Sbjct: 193 DNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGL 252
Query: 368 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLR 425
L L +L+ L+L ++TD GLA L L L HL+L G +TD G A+LR L+
Sbjct: 253 AHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQ 312
Query: 426 SLEICG-GGLTDAGVKH 441
L++ G LTDAG+ H
Sbjct: 313 HLDLDGCNNLTDAGLAH 329
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 343 LRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 400
L H S +E+I+ S ++D L L +LK L L A R +TD GLA L L L
Sbjct: 179 LNHFSN--EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEAL 236
Query: 401 THLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 458
HL+L +TD+G A+L L+ L++ G LTDAG+ ++ L +L LNL N
Sbjct: 237 KHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDN 296
Query: 459 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRH 490
LTD L + L L L++ + +T AGL H
Sbjct: 297 LTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 410 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+TD+ L+N KNL+ L++ LTD G+ H+ L +L LNLS+ NLTD L ++
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 469 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 505
L L L++ +++T AGL L+PL L+ L L+ C
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGC 294
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 31/171 (18%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCS 214
++E+++ +TD+ + L NLK LQ+ +C +TD G+A+L
Sbjct: 185 EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHL-------------- 230
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 272
L+ L LNL C +T A L L+ L +L YL+L C +L+D G
Sbjct: 231 ------------APLEALKHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLA 278
Query: 273 KFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVN 321
+ + +L+ LNL G + +TD L HL+ L L+ L+LD C + D GL +
Sbjct: 279 RLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+L ++LS D +TD+GL HL LQ LD C +++D GL LR L L L+ +
Sbjct: 234 EALKHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKG 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L+ L LDL+ C +
Sbjct: 294 CDNLTDIGLAHLRPLVALQHLDLDGCNNL 322
>gi|77556733|gb|ABA99529.1| Leucine Rich Repeat family protein, expressed [Oryza sativa
Japonica Group]
Length = 488
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 180/402 (44%), Gaps = 46/402 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
G +LE L++KWC I+D + LS + L+SL IS KV + + + L + +
Sbjct: 9 GCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLRSISSLEKLEELAM 68
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+C I L + L +++ C VT+ L SL G F LN +
Sbjct: 69 VCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLID-GHNFLQKLNAADSLHEM 127
Query: 271 CEKF-SKIGSLK----VLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
+ F S + LK VL L E++ L+ + G NL + L C G+ DEG+ +L
Sbjct: 128 RQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVT 187
Query: 325 LC------NLKCLEL----------------------SDTQVGSSGLRHLS-GLTNLESI 355
C +L C L S + + GL ++ NL+ I
Sbjct: 188 QCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLESCSSISEKGLEQIATSCPNLKEI 247
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITD 412
+L+ G++D +L+ LA S L L L I+D GLA ++S G L LDL+ ITD
Sbjct: 248 DLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITD 307
Query: 413 SGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-G 469
G A L N K ++ L +C +TD+G+ H+ L LT L L +T + ++ G
Sbjct: 308 DGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVAIG 367
Query: 470 LTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVTA 509
L+ +++ + AGL L NLR LT+ C+VT
Sbjct: 368 CKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTG 409
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 229 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 288
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 289 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 325
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV 208
+CN ITDS + L L L +L++ C + + G+ ISSV
Sbjct: 326 CYCNKITDSGLGHLGSLEELTNLELRC-------LVRITGIGISSV 364
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 111/422 (26%), Positives = 189/422 (44%), Gaps = 37/422 (8%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L ++D +D+++ + L S+D+S V + L + L+ L C
Sbjct: 13 LEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLRSISSLEKLEELAMVCCS 72
Query: 93 QISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH------ 145
I D GLE L +G ++L S+ R + +T+QG+ + N ++ L +H
Sbjct: 73 CIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQ-KLNAADSLHEMRQSF 131
Query: 146 -GGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
L LK +++L+ L ++ S + + G NL + +S C+ VTD GI+ L
Sbjct: 132 LSNLAKLKDTLTVLRLDGLE------VSSSVLLAIGGCNNLVEIGLSKCNGVTDEGISSL 185
Query: 201 -KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLF 257
S VI + C ++ L + + + L LE C ++ L+ ++ + +L
Sbjct: 186 VTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLESCSSISEKGLEQIATSCPNLK 245
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSC-GI 314
++L C ++D + +K L VL LG + I+D+ L + L L+L C I
Sbjct: 246 EIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSI 305
Query: 315 GDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLESINL----SFTGISDGSLR 368
D+GL L C +K L L ++ SGL HL L L ++ L TGI S+
Sbjct: 306 TDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGISSVA 365
Query: 369 KLAGLSSLKSLNLD-ARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLRS 426
G +L ++L + D GL AL L L + ++T G +L +LR
Sbjct: 366 --IGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLRC 421
Query: 427 LE 428
L+
Sbjct: 422 LQ 423
>gi|406832462|ref|ZP_11092056.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 306
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 8/191 (4%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS--CGIGDEGLVNLT 323
L+ DGC + + + L L L DE L L LT L L+++ CG G
Sbjct: 92 LTQDGCRRLASLTKLISLRLAVP--NDEALSDLAALTELGDLSVEGNICG---RGFHRFP 146
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLD 382
L L ++ + S +R ++ + + S+T I+D LR L ++ L
Sbjct: 147 ETSELHSLRIASAKNISDEIRSINTFRGIRRLVFSYTPITDNHLRALRPTVARLFGFEAY 206
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
+ITD G+ L L L L GA ITD+G +R LR L + LTD +KH+
Sbjct: 207 GSEITDDGVREFQDLPELERLSLVGAHITDTGVMAMRQLPKLRELTLVDNELTDNCIKHL 266
Query: 443 KDLSSLTLLNL 453
K S L ++L
Sbjct: 267 KQFSQLRHVSL 277
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 31/222 (13%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLESL 160
R L++LT L R + + A L L L +E C R G +L SL
Sbjct: 98 RRLASLTKLISLRLAVPNDEALSDLAALTELGDLSVEGNICGR---GFHRFPETSELHSL 154
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
I I+D +++ ++ ++ L S + +TD+ + L+ + RLF
Sbjct: 155 RIASAKNISD-EIRSINTFRGIRRLVFSYTPITDNHLRALR------------PTVARLF 201
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
+ G +T + L L L+L ++D G ++ L
Sbjct: 202 GFEAY-------------GSEITDDGVREFQDLPELERLSLVGAHITDTGVMAMRQLPKL 248
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
+ L L NE+TD C+ HLK + L ++L + +G V L
Sbjct: 249 RELTLVDNELTDNCIKHLKQFSQLRHVSLCKTKVSVQGGVRL 290
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
+EITD+ + + L LE L+L I D G++ + L L+ L L D ++ + ++HL
Sbjct: 208 SEITDDGVREFQDLPELERLSLVGAHITDTGVMAMRQLPKLRELTLVDNELTDNCIKHLK 267
Query: 348 GLTNLESINLSFTGIS 363
+ L ++L T +S
Sbjct: 268 QFSQLRHVSLCKTKVS 283
>gi|320168558|gb|EFW45457.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 828
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 141/330 (42%), Gaps = 13/330 (3%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCT 142
SL N I+ G GL+ LT+L N +I A L +L +LD + T
Sbjct: 67 SLQGNLIPSIAAGAFT---GLTALTTLHLYANQLTSIPAYNFTVLTALKDL-RLDNNQIT 122
Query: 143 RIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
I V L L +L N + I S L+ L NL Q + + D+ + L
Sbjct: 123 SISANAFVGLTALTQLLLYN-NQISSIPASAWADLNTLINLSLYQNRITSINDASLTSLT 181
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261
L IL + I + F L LT L ++ P+T+ + ++L +L L L
Sbjct: 182 ALKT----LILDNNQITSVPANAF-AGLTSLTYLTVQSNPITSISAGAFASLSALTCLYL 236
Query: 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
+ QL + F+ + +L +LNL N++T GL L L L I
Sbjct: 237 SSNQLVSIPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADA 296
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
TGL L L+L+ Q S L+GL L ++ L I+ AG+++L+++ L
Sbjct: 297 FTGLNALSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVL 356
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARIT 411
QIT +A T LT +T+L L G +T
Sbjct: 357 STNQITSIAASAFTGLTAVTYLVLDGNPVT 386
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 100/235 (42%), Gaps = 7/235 (2%)
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLK 329
F+ + +L L+L N++T + LT L+ L LD+ I V LT L L
Sbjct: 80 AFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLDNNQITSISANAFVGLTALTQLL 139
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
+ + +S L+ L NL T I+D SL L ++LK+L LD QIT
Sbjct: 140 LYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSL---TALKTLILDNNQITSV 196
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
A LT LT+L + IT A + L L + L DL++LT
Sbjct: 197 PANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFTDLTALT 256
Query: 450 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
LLNL N LT + +GL L L + ++ITS L L L L S
Sbjct: 257 LLNLRDN-QLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLTS 310
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 140/337 (41%), Gaps = 32/337 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
GL L +L++ + N +T + LT LK L++ +++T SIS+ F
Sbjct: 81 FTGLTALTTLHL-YANQLTSIPAYNFTVLTALKDLRLDNNQIT----------SISANAF 129
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 268
V LT+L +L L N + P +A + L +L L+L + +++
Sbjct: 130 -------------VGLTALTQLLLYNNQISSIPASA-----WADLNTLINLSLYQNRITS 171
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+ + +LK L L N+IT GLT+L L + S I L L
Sbjct: 172 INDASLTSLTALKTLILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSAL 231
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
CL LS Q+ S + LT L +NL ++ S GL +L L L QIT
Sbjct: 232 TCLYLSSNQLVSIPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITS 291
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
A T L L+ LDL + + ++ L L +L + +T +++L
Sbjct: 292 IAADAFTGLNALSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTAL 351
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
+ LS N +T +GLT + L + + +T+
Sbjct: 352 QAVVLSTN-QITSIAASAFTGLTAVTYLVLDGNPVTT 387
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 129/323 (39%), Gaps = 47/323 (14%)
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
T L+L+G + + + + L +L L+L QL+ F+ + +LK L L N+IT
Sbjct: 64 TRLSLQGNLIPSIAAGAFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLDNNQITS 123
Query: 293 ECLVHLKGLTNLESL--------NLDSCGIGD-EGLVNL---------------TGLCNL 328
GLT L L ++ + D L+NL T L L
Sbjct: 124 ISANAFVGLTALTQLLLYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSLTAL 183
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
K L L + Q+ S +GLT+L + + I+ S A LS+L L L + Q+
Sbjct: 184 KTLILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLVS 243
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
A T LT LT L+L ++T A L L++ G +T L++L
Sbjct: 244 IPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNAL 303
Query: 449 TLLNLSQNC-----------------------NLTDKTLELISGLTGLVSLNVSNSRITS 485
+ L+L+ N ++T +G+T L ++ +S ++ITS
Sbjct: 304 SFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTNQITS 363
Query: 486 AGLRHLKPLKNLRSLTLESCKVT 508
L + L L+ VT
Sbjct: 364 IAASAFTGLTAVTYLVLDGNPVT 386
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 112/284 (39%), Gaps = 30/284 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ LT L NN I++ A+A L L+ L L R T I+ +
Sbjct: 120 QITSISANAFVGLTALTQL-LLYNNQISSIPASAWADLNTLINLSLYQNRITSINDA--S 176
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
L L L++L I N IT +GLT+L L + + +T LS + ++
Sbjct: 177 LTSLTALKTL-ILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLY 235
Query: 211 ILCSMIIRL-----------------------FCLHVFLTSLQKLTLLNLEGCPVTAACL 247
+ + ++ + + F T L LT L L G +T+
Sbjct: 236 LSSNQLVSIPADAFTDLTALTLLNLRDNQLTSISANAF-TGLVALTQLQLPGNQITSIAA 294
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
D+ + L +L +L+L Q S + + +L L L N IT G+T L+++
Sbjct: 295 DAFTGLNALSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQAV 354
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
L + I TGL + L L V + GL N
Sbjct: 355 VLSTNQITSIAASAFTGLTAVTYLVLDGNPVTTLPPGLFQGLPN 398
>gi|195383050|ref|XP_002050239.1| GJ20310 [Drosophila virilis]
gi|194145036|gb|EDW61432.1| GJ20310 [Drosophila virilis]
Length = 542
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 156/298 (52%), Gaps = 28/298 (9%)
Query: 232 LTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL 285
LT LNL GC A ++ A L +L L+L+ C Q++D + ++ + +L+ L L
Sbjct: 240 LTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLEL 298
Query: 286 G--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELS 334
G N L+ GL L LNL SC I D+G+ +L G L+ L L
Sbjct: 299 GGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQ 358
Query: 335 DTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 390
D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL + I+D G
Sbjct: 359 DCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIG 418
Query: 391 LAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLS 446
+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+ I K L
Sbjct: 419 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLH 478
Query: 447 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L LN+ Q +TDK L+ L L+ L ++++ ++++S G+ + L L+ L L
Sbjct: 479 ELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 536
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 75/324 (23%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +++L G ++T++GL+ + L+ L+ C ISD G+ H
Sbjct: 278 ITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGH 337
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLES 159
L G S T+ G + L L L+ C R+ + +GL L+S
Sbjct: 338 LAGFSRETA-----------------EGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKS 380
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMI 216
+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G I+S+ C I
Sbjct: 381 INLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKI 440
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
S Q LT + L L L+LN+CQ++D G K +
Sbjct: 441 -----------SDQALTHIA--------------QGLYRLRSLSLNQCQITDQGMLKIA- 474
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELS 334
K L LE+LN+ C I D+GL L L NLK ++L
Sbjct: 475 ----------------------KSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLY 512
Query: 335 D-TQVGSSGLRHLSGLTNLESINL 357
TQ+ S G+ + L L+ +NL
Sbjct: 513 GCTQLSSKGIDIIMKLPKLQKLNL 536
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 171/377 (45%), Gaps = 82/377 (21%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 216 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 267
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
++L++ C ITD+ + ++ L NL++L++ C +T++G+ +
Sbjct: 268 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAW------------- 314
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSL--FYLNLNRCQ- 265
L+KL LNL C + A +A G+L YL L CQ
Sbjct: 315 ------------GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQR 362
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 363 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 422
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLN 380
T G SG + S+++SF ISD +L +A GL L+SL+
Sbjct: 423 TE--------------GGSG---------INSLDVSFCDKISDQALTHIAQGLYRLRSLS 459
Query: 381 LDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTD 436
L+ QITD G+ + SL L +L++ +RITD G L + NL+++++ G L+
Sbjct: 460 LNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSS 519
Query: 437 AGVKHIKDLSSLTLLNL 453
G+ I L L LNL
Sbjct: 520 KGIDIIMKLPKLQKLNL 536
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 294
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 401
LE N++ TG+ L GL L+ LNL + I+D G+ L + G
Sbjct: 295 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 350
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 351 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 409
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 410 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 466
>gi|325108218|ref|YP_004269286.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
gi|324968486|gb|ADY59264.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
Length = 1046
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 326
+DD S SL+ + + + ITD L L + L + + L +L+ C
Sbjct: 319 NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLS-RC 377
Query: 327 NLKCLELSDTQVGSSGLRH--------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ +EL+ GL+H L+ L + L T ++D +L+ L+ L+SL+
Sbjct: 378 QAEIIELT-----GRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRV 432
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L D Q+T GL L S+ L + L GA TD A L+ K+LR +++ +T+AG
Sbjct: 433 LCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDETIALLQPLKSLRRIDLADSAITNAG 492
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL 497
+ + +++SL ++L Q ++T++ + ++ L L L + +R L KP ++
Sbjct: 493 LAELANITSLEWIDL-QGTDITNQGVAALAALNDLQRLELRGTRCNRGSWNTLSKPFPDI 551
Query: 498 R 498
R
Sbjct: 552 R 552
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 49/271 (18%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
++ W NC D D+ LS +L+ + I+ +TD
Sbjct: 312 DLDWMNC-NDDDVALLSDCPSLRRVYIASDAITDRAAE---------------------- 348
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
L Q+L + L G +T A L LS RCQ ++I +
Sbjct: 349 ----LLADTQQLRHIRLTGNQLTEASLRHLS-----------RCQ---------AEI--I 382
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
++ G I +E L L L L + D+ L L+ L +L+ L Q+
Sbjct: 383 ELTGRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLTSLRVLCADGHQLTP 442
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+GL+ L+ + L+ I L +D ++ L L SL+ ++L IT+ GLA L ++T L
Sbjct: 443 AGLKQLASMPFLQEIRLPGANWTDETIALLQPLKSLRRIDLADSAITNAGLAELANITSL 502
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICG 431
+DL G IT+ G A L +L+ LE+ G
Sbjct: 503 EWIDLQGTDITNQGVAALAALNDLQRLELRG 533
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 43/261 (16%)
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G EK + L +N D+ + L +L + + S I D L L+
Sbjct: 303 GVEKNTNPADLDWMN-----CNDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLR 357
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKLAGLSSLKSLNLDARQI 386
+ L+ Q+ + LRHLS E I L+ G I + +LA +L+ L L +
Sbjct: 358 HIRLTGNQLTEASLRHLS-RCQAEIIELTGRGLKHIPNEIFSQLAKSETLRDLRLWDTAL 416
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
TD L AL+SLT +LR L G LT AG+K + +
Sbjct: 417 TDDNLQALSSLT------------------------SLRVLCADGHQLTPAGLKQLASMP 452
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
L + L N TD+T+ L+ L L +++++S IT+AGL L + +L + L+
Sbjct: 453 FLQEIRLP-GANWTDETIALLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTD 511
Query: 507 VTA---------NDIKRLQSR 518
+T ND++RL+ R
Sbjct: 512 ITNQGVAALAALNDLQRLELR 532
>gi|443723521|gb|ELU11898.1| hypothetical protein CAPTEDRAFT_102929 [Capitella teleta]
Length = 439
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 150/315 (47%), Gaps = 66/315 (20%)
Query: 235 LNLEGCP-VTAACL-DSLSA-LGSLFYLNLNRCQLSDD-------GCEKFSKIGSLKVLN 284
LNL GC VT + +LS L SL LNL+ C++ D G +K L+ L
Sbjct: 140 LNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQK-----QLQELE 194
Query: 285 LG-FNEITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
LG +IT L+ L GL+NL LNL SC I DEG+ LTG + G++
Sbjct: 195 LGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAYLTG-------QSHTVPTGTA 247
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTG 399
L H+ + I+D SL+ L+ G S LKS+NL +TD+GL L+ +
Sbjct: 248 MLEHI--------VLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTDSGLECLSRMPS 299
Query: 400 LTHLDL---------------------------FGARITDSGAAYLRN-FKNLRSLEICG 431
L LDL F RITD+ ++ + +L +L +C
Sbjct: 300 LQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHGLIHLTALSLCD 359
Query: 432 GGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGL 488
++D G++H I + LN+ Q LTD +LELI+ T L ++++ +RIT G+
Sbjct: 360 CSISDEGIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDIYGCTRITKLGV 419
Query: 489 RHLKPLKNLRSLTLE 503
+HL+ ++ ++ +E
Sbjct: 420 KHLRDQPHISAINME 434
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 17/212 (8%)
Query: 130 LINLVKLDLERCTRIHGGLVN-LKGLMK-LESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
L +LV L+L C I + + G K L+ L + C IT + + L+ GL+NL+ L
Sbjct: 161 LPSLVSLNLSLCKVITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLN 220
Query: 187 I-SCSKVTDSGIAYLKGLSISSVI-FILCSMIIRLFCLHVFLTSLQKLTL-------LNL 237
+ SC K+TD G+AYL G S + + I+ C + SL+ L+L +NL
Sbjct: 221 LRSCCKITDEGVAYLTGQSHTVPTGTAMLEHIVLQDCQKITDVSLKYLSLGFSQLKSVNL 280
Query: 238 EGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDE 293
C VT + L+ LS + SL L+L C +SD G ++ + L VL+L F + ITD
Sbjct: 281 SFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDT 340
Query: 294 CLVHL-KGLTNLESLNLDSCGIGDEGLVNLTG 324
L+H+ GL +L +L+L C I DEG+ +L G
Sbjct: 341 ALLHISHGLIHLTALSLCDCSISDEGIQHLIG 372
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 158/328 (48%), Gaps = 50/328 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISS 207
++G+ L SLN+ C +TD M L +L SL +S C +TDS IA + G
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQ--- 187
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNR-C 264
++L L L GC T A L L +L LNL C
Sbjct: 188 ----------------------KQLQELELGGCAQITTNALLLLACGLSNLRRLNLRSCC 225
Query: 265 QLSDDGCEKFS------KIGSLKVLNLGFNE---ITDECLVHLK-GLTNLESLNLDSC-G 313
+++D+G + G+ + ++ + ITD L +L G + L+S+NL C G
Sbjct: 226 KITDEGVAYLTGQSHTVPTGTAMLEHIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTG 285
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKL 370
+ D GL L+ + +L+ L+L + G+ +L+ GLT L ++LSF I+D +L +
Sbjct: 286 VTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHI 345
Query: 371 A-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGA-RITDSGAAYL-RNFKNLRS 426
+ GL L +L+L I+D G+ L S + L++ R+TD+ + +NF L +
Sbjct: 346 SHGLIHLTALSLCDCSISDEGIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHT 405
Query: 427 LEICG-GGLTDAGVKHIKDLSSLTLLNL 453
++I G +T GVKH++D ++ +N+
Sbjct: 406 IDIYGCTRITKLGVKHLRDQPHISAINM 433
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 141/280 (50%), Gaps = 33/280 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G + +T + L+ L SNL+ L+ C +I+D G+ +
Sbjct: 175 ITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAY 234
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L G S+ T M L ++V D ++ T + ++L G +L+S+N
Sbjct: 235 LTGQSHTVP---------TGTAM-----LEHIVLQDCQKITDVSLKYLSL-GFSQLKSVN 279
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLSISSVIFI-LCSMIIR 218
+ +C +TDS ++ LS + +L+ L + +C ++D G+ YL +GL+ SV+ + C I
Sbjct: 280 LSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITD 339
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS---LFYLNLNRC-QLSDDGCE-- 272
LH+ L LT L+L C ++ + L +GS + LN+ +C +L+D E
Sbjct: 340 TALLHIS-HGLIHLTALSLCDCSISDEGIQHL--IGSSQDIVKLNIGQCDRLTDASLELI 396
Query: 273 --KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
F+++ ++ + G IT + HL+ ++ ++N++
Sbjct: 397 AQNFTQLHTIDI--YGCTRITKLGVKHLRDQPHISAINME 434
>gi|328869082|gb|EGG17460.1| hypothetical protein DFA_08455 [Dictyostelium fasciculatum]
Length = 713
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 173/380 (45%), Gaps = 13/380 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD--VTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLE 100
V K MD + G L+ + L D V ++ +++ L L ++ F C ++D G+E
Sbjct: 307 VERKAMDQLKVAGVRLMDMHLDHQDLLVNNNFVLNCLPGFVYLHTISFVGCSNVTDTGME 366
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ ++NLTSL+ I+ +K L L L L G++ L L KLESL
Sbjct: 367 GFKTMTNLTSLNLT-GTRISDVSLKFIRRLTLLRSLSLRNTGITEKGVLLLSPLSKLESL 425
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
++ S M ++ +NL +L + + VT+ GI + L I+++ + C I
Sbjct: 426 DLTNLLLTDTS-MLTVATFSNLNTLLLGNALVTEKGINDISNLPITTLSLLHCKKINN-- 482
Query: 221 CLHVFLTSLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSKIG 278
V+LT Q L L++ G V L L L L NR ++DD + +
Sbjct: 483 ASMVYLTKYQNTLESLDITGTMVMGMGFIHLKRFKKLRDLQLPNRLCITDDTIKHLDSLE 542
Query: 279 SLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
+ L+L + +IT + + L L L+L + I D+ + + NL+ L L T
Sbjct: 543 FISKLHLSDYTQIT--SITSIPNLKRLVDLSLSNTKISDDSIPTILKYLNLEHLNLDRTN 600
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
V G+ L+ L L +++LS T I+ +L+G++ LK LN+ +I D + AL L
Sbjct: 601 VTDFGVSQLAVL-QLTTLSLSSTKINGTCFPELSGITLLKWLNVSNNEIDDAKVPALFKL 659
Query: 398 TGLTHLDLFGARITDSGAAY 417
L +DL G S +
Sbjct: 660 PELQFIDLRGTYAYKSAREF 679
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 35/356 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
L G + L +++ C+ +TD+ M+ +TNL SL ++ ++++D + +++ L++ +
Sbjct: 343 LPGFVYLHTISFVGCSNVTDTGMEGFKTMTNLTSLNLTGTRISDVSLKFIRRLTLLRSLS 402
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+ + I L L+ L KL E +T L S L + NLN L
Sbjct: 403 LRNTGITEKGVL--LLSPLSKL-----ESLDLTNLLLTDTSMLTVATFSNLNTLLL---- 451
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-L 328
G+ V G N+I++ + +L+L C I + +V LT N L
Sbjct: 452 -------GNALVTEKGINDISNLPIT---------TLSLLHCKKINNASMVYLTKYQNTL 495
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQI 386
+ L+++ T V G HL L + L I+D +++ L L + L+L D QI
Sbjct: 496 ESLDITGTMVMGMGFIHLKRFKKLRDLQLPNRLCITDDTIKHLDSLEFISKLHLSDYTQI 555
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
T + ++ +L L L L +I+D + + NL L + +TD GV + L
Sbjct: 556 T--SITSIPNLKRLVDLSLSNTKISDDSIPTILKYLNLEHLNLDRTNVTDFGVSQLAVL- 612
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
LT L+LS + + +SG+T L LNVSN+ I A + L L L+ + L
Sbjct: 613 QLTTLSLS-STKINGTCFPELSGITLLKWLNVSNNEIDDAKVPALFKLPELQFIDL 667
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 126/245 (51%), Gaps = 4/245 (1%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
++D G E F + +L LNL I+D L ++ LT L SL+L + GI ++G++ L+ L
Sbjct: 360 VTDTGMEGFKTMTNLTSLNLTGTRISDVSLKFIRRLTLLRSLSLRNTGITEKGVLLLSPL 419
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L+ L+L++ + + + ++ +NL ++ L +++ + ++ L L ++
Sbjct: 420 SKLESLDLTNLLLTDTSMLTVATFSNLNTLLLGNALVTEKGINDISNLPITTLSLLHCKK 479
Query: 386 ITDTGLAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIK 443
I + + LT L LD+ G + G +L+ FK LR L++ +TD +KH+
Sbjct: 480 INNASMVYLTKYQNTLESLDITGTMVMGMGFIHLKRFKKLRDLQLPNRLCITDDTIKHLD 539
Query: 444 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
L ++ L+LS +T ++ I L LV L++SN++I+ + + NL L L+
Sbjct: 540 SLEFISKLHLSDYTQIT--SITSIPNLKRLVDLSLSNTKISDDSIPTILKYLNLEHLNLD 597
Query: 504 SCKVT 508
VT
Sbjct: 598 RTNVT 602
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 107/204 (52%), Gaps = 12/204 (5%)
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
G V L + + C ++DT G+ +TNL S+NL+ T ISD SL+ + L+ L+
Sbjct: 345 GFVYLHTISFVGCSNVTDT-----GMEGFKTMTNLTSLNLTGTRISDVSLKFIRRLTLLR 399
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
SL+L IT+ G+ L+ L+ L LDL +TD+ + F NL +L + +T+
Sbjct: 400 SLSLRNTGITEKGVLLLSPLSKLESLDLTNLLLTDTSMLTVATFSNLNTLLLGNALVTEK 459
Query: 438 GVKHIKDL--SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
G+ I +L ++L+LL+ + N + + L L SL+++ + + G HLK K
Sbjct: 460 GINDISNLPITTLSLLHCKKINNAS--MVYLTKYQNTLESLDITGTMVMGMGFIHLKRFK 517
Query: 496 NLRSLTLES--CKVTANDIKRLQS 517
LR L L + C +T + IK L S
Sbjct: 518 KLRDLQLPNRLC-ITDDTIKHLDS 540
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 108/258 (41%), Gaps = 30/258 (11%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLVNLK 152
+++ G+ + L +T+LS I M N L LD+ + G ++LK
Sbjct: 456 VTEKGINDISNLP-ITTLSLLHCKKINNASMVYLTKYQNTLESLDITGTMVMGMGFIHLK 514
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
KL L + CITD +K L L + L +S Y + SI+S+
Sbjct: 515 RFKKLRDLQLPNRLCITDDTIKHLDSLEFISKLHLS---------DYTQITSITSI---- 561
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+L++L L+L ++ + ++ +L +LNL+R ++D G
Sbjct: 562 --------------PNLKRLVDLSLSNTKISDDSIPTILKYLNLEHLNLDRTNVTDFGVS 607
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+ + + L L+L +I C L G+T L+ LN+ + I D + L L L+ ++
Sbjct: 608 QLA-VLQLTTLSLSSTKINGTCFPELSGITLLKWLNVSNNEIDDAKVPALFKLPELQFID 666
Query: 333 LSDTQVGSSGLRHLSGLT 350
L T S S +T
Sbjct: 667 LRGTYAYKSAREFNSSVT 684
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 10/194 (5%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
+TE + + + L L +N+ M + ++L S+D++G+ V G IHLK
Sbjct: 456 VTEKGINDISNLPITTLSLLHCKKINNASMVYLTKYQNTLESLDITGTMVMGMGFIHLKR 515
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
L+ L + I+D ++HL L ++ L IT+ + + L LV L L
Sbjct: 516 FKKLRDLQLPNRLCITDDTIKHLDSLEFISKLHLSDYTQITS--ITSIPNLKRLVDLSLS 573
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----- 194
+ + + LE LN+ N +TD + L+ L L +L +S +K+
Sbjct: 574 NTKISDDSIPTILKYLNLEHLNLDRTN-VTDFGVSQLAVL-QLTTLSLSSTKINGTCFPE 631
Query: 195 -SGIAYLKGLSISS 207
SGI LK L++S+
Sbjct: 632 LSGITLLKWLNVSN 645
>gi|149178243|ref|ZP_01856836.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148842892|gb|EDL57262.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 254
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
+L +ITDE L L GL+ ++SLNL + GL L L L L L T+V +
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGL 400
GL+HL L NLE +NL T I+D L +L+ L LK L + ++T GLA +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+ +LS I+D +L+ LAGLS + SLNL ++T GLA L L LTHL L ++ D+
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
G +L+ NL L + G +TDAG+ + L L L + Q L L +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
LSD ++ L+ L+GL+ ++S+NL T ++ L +L L +L L+L+ ++ D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSL 448
GL L L L +L+L+G ITD+G + L + K L+ L + +T AG+ + ++ L
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Query: 449 TLLNLSQNCN 458
++ L +
Sbjct: 178 EVIGLPEEPK 187
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+ +L I DE L L GL + L L T+V S+GL L L L ++L T ++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ L L +L+ LNL +ITD GL+ L+SL L L ++ ++T L+ +
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQE--QIT 175
Query: 426 SLEICG 431
LE+ G
Sbjct: 176 GLEVIG 181
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
+ +L ++ITD L L L+ + L+L G +T +G A L++ K L L + + DA
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
G+KH++ L +L LNL + IT AGL L LK L
Sbjct: 118 GLKHLQQLPNLEYLNLY-------------------------GTEITDAGLSQLSSLKKL 152
Query: 498 RSLTLESCKVT 508
+ L + KVT
Sbjct: 153 KRLYVWQTKVT 163
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+T L +L+ L + LNL +++ G + + +L L+L ++ D L HL+ L
Sbjct: 66 ITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQL 125
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-SSGLRHLSGLTNLESINLS 358
NLE LNL I D GL L+ L LK L + T+V +GL +T LE I L
Sbjct: 126 PNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGLP 183
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ +TD+TL+ ++GL+ + SLN+ + +TSAGL L+ LK L L LE KV +K L
Sbjct: 63 DQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHL 122
Query: 516 QSRDLPNL 523
Q LPNL
Sbjct: 123 QQ--LPNL 128
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L K+ LNL G VT+A L L L +L +L+L + +++D G + ++ +L+ LNL
Sbjct: 74 LAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLNL 133
Query: 286 GFNEITDECLVHLKGLTNLESL 307
EITD L L L L+ L
Sbjct: 134 YGTEITDAGLSQLSSLKKLKRL 155
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +IA+ GS L +L+ +D HL D +I+D L+
Sbjct: 29 PATEQAKAKIIAAGGSVL---ELAQNDDRLEIAFHLSDQ------------KITDETLKT 73
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS + SL+ R +T+ G+ L L L LE+ GL +L+ L LE LN
Sbjct: 74 LAGLSKVDSLNLR-GTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLN 132
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-DSGIA 198
+ + ITD+ + LS L LK L + +KVT +G+A
Sbjct: 133 L-YGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLA 169
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+L+ +++D+ + + + + LNL E+T L L+ L L L+L+ + D G
Sbjct: 59 FHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAG 118
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L +L L NL+ L L T++ +GL LS L L+ + + T ++
Sbjct: 119 LKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVT 163
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 26/124 (20%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
ITD +K L+GL+ + SL + ++VT +G+A L+
Sbjct: 66 ITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQ-------------------------- 99
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
L+ LT L+LE V A L L L +L YLNL +++D G + S + LK L +
Sbjct: 100 HLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQ 159
Query: 288 NEIT 291
++T
Sbjct: 160 TKVT 163
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 408 ARITDSGAAYLRNFKNLRSLEIC----GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
A+I +G + L +N LEI +TD +K + LS + LNL + +T
Sbjct: 36 AKIIAAGGSVLELAQNDDRLEIAFHLSDQKITDETLKTLAGLSKVDSLNL-RGTEVTSAG 94
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L + L L L++ +++ AGL+HL+ L NL L L ++T
Sbjct: 95 LAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLNLYGTEIT 139
>gi|219821342|gb|ACL37806.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + LTGL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLTGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLTGLTALT 262
>gi|406939756|gb|EKD72712.1| hypothetical protein ACD_45C00605G0001 [uncultured bacterium]
Length = 541
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 114/265 (43%), Gaps = 13/265 (4%)
Query: 205 ISSVIFILCSMIIRLFCLHVFLTS----LQKLTLLNLEGCPVTAACLDS---------LS 251
+S IF +II L + F + ++ L G P++ L L
Sbjct: 2 VSRFIFYTFILIINLVGSYAFADPHTYCINRMAELLQRGTPLSQCGLTDKDVPRVISLLQ 61
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
+ LNL + G SK +L L+L N+I D T L L + +
Sbjct: 62 QYPKVDTLNLEMNHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTELYIIA 121
Query: 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 371
IG EG L+ NL+ L + D +GSSG L+ + N++ I+L I D + +
Sbjct: 122 NAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDDGIIPYS 181
Query: 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
+SLKS+ L+ ITD G LT+ L + L I D GA L K + SL++
Sbjct: 182 KNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYITSLDVSN 241
Query: 432 GGLTDAGVKHIKDLSSLTLLNLSQN 456
++ G+K ++ ++T L + N
Sbjct: 242 NHISTIGIKALQQNKNITELETTGN 266
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 119/472 (25%), Positives = 199/472 (42%), Gaps = 55/472 (11%)
Query: 38 LGQYPGVN--DKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDF 88
L QYP V+ + M+ I +G++LLS +DLS + + D+G + L L
Sbjct: 60 LQQYPKVDTLNLEMNHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTEL-- 117
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
I + G E +GLS +L +N I + G + A + N+ ++ L
Sbjct: 118 --YIIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDD 175
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG---IAYLKGL 203
G++ L+S+ + N ITD K L+ +LK + +S +++ D G +AY K +
Sbjct: 176 GIIPYSKNTSLKSIALNK-NHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYI 234
Query: 204 SISSVIFILCSMI-IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL-------GS 255
+ V S I I+ + +T L+ T NL+ P + C + + S
Sbjct: 235 TSLDVSNNHISTIGIKALQQNKNITELE--TTGNLDKPP--SLCFNDIDKRVNVSVEDPS 290
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
+ LNL C+L D ++ F +T +H + L + + IG
Sbjct: 291 IVRLNLYSCELRD--------------ADISF--VTSYLNLH----PYINFLQISNNKIG 330
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
G + L LK L +S+ + S S T L ++L + + + LA +
Sbjct: 331 SNGAILLGQNKTLKTLNISNNLLDSRSAEAFSKNTTLIRLDLEGNHLGENGAKILANNNV 390
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
L LN+ + D G AALT + L L +I+D G + F L + G ++
Sbjct: 391 LDVLNISKNYVGDDGFAALTKMKSLKILIADDNQISDLGVSSPFLF---HELYLSGNNIS 447
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
G I SLT L LS N L D +++ ++SLN++ + I S G
Sbjct: 448 SIGADMISHNPSLTDLGLSDNY-LGDDGATILARNKSIISLNLNYNEIGSTG 498
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 168/413 (40%), Gaps = 49/413 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ +L + + + + SG I L + N+Q + I D G+ ++L S++
Sbjct: 133 SQNKNLRILLIGDNHIGSSGAISLANMRNIQRISL-MNNDIDDDGIIPYSKNTSLKSIAL 191
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N+ IT +G K I+L ++ L G ++L + SL++ N I+ +
Sbjct: 192 NKNH-ITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYITSLDVS-NNHISTIGI 249
Query: 174 KPLSGLTNLKSLQIS---------CSKVTDSGI-AYLKGLSISSVIFILC-------SMI 216
K L N+ L+ + C D + ++ SI + C S +
Sbjct: 250 KALQQNKNITELETTGNLDKPPSLCFNDIDKRVNVSVEDPSIVRLNLYSCELRDADISFV 309
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
LH ++ LQ ++ A L L +L LN++ L E FSK
Sbjct: 310 TSYLNLHPYINFLQ----ISNNKIGSNGAIL--LGQNKTLKTLNISNNLLDSRSAEAFSK 363
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
+L L+L N + + L L+ LN+ +GD+G LT + +LK L D
Sbjct: 364 NTTLIRLDLEGNHLGENGAKILANNNVLDVLNISKNYVGDDGFAALTKMKSLKILIADDN 423
Query: 337 QVGSSGLR--------HLSGLTNLESI-------NLSFT--GISDGSLRK-----LAGLS 374
Q+ G+ +LSG N+ SI N S T G+SD L LA
Sbjct: 424 QISDLGVSSPFLFHELYLSG-NNISSIGADMISHNPSLTDLGLSDNYLGDDGATILARNK 482
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
S+ SLNL+ +I TG A+ L L++ I G A L N K L L
Sbjct: 483 SIISLNLNYNEIGSTGAIAIAQNIILRDLNIAHNHICSIGLAALYNNKTLEKL 535
>gi|157118403|ref|XP_001659098.1| F-Box protein, putative [Aedes aegypti]
gi|108875753|gb|EAT39978.1| AAEL008262-PA, partial [Aedes aegypti]
Length = 381
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 141/296 (47%), Gaps = 67/296 (22%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSV 208
+G+ K++ L C ITD + + + L NL++L +S C +VTDS + +
Sbjct: 132 RGIKKVQILG---CYNITDISLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIA------- 181
Query: 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP--VTAACLDSLSALG--SLFYLNLNRC 264
L+ + +L L GC A L +A G +L YL L C
Sbjct: 182 ------------------QHLKNVEILELGGCSNITNTAGLSKETADGTPALEYLGLQDC 223
Query: 265 Q-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV 320
Q LSD+ ++ + SLK +NL F +TD L HL +T LE LNL +C I D G+
Sbjct: 224 QRLSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMA 283
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKS 378
LT G + + S+++SF I+D +L ++ GL LKS
Sbjct: 284 YLT-----------------------EGGSAIISLDVSFCDKIADQALTHISQGLFHLKS 320
Query: 379 LNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG 431
L+L A QITD GLA + SL L L++ AR+TD G YL + NLR++++ G
Sbjct: 321 LSLSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYG 376
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 280 LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG--IGDEGLVNLT--GLCNLKCLEL 333
L+ L+L ++TD L + + L N+E L L C GL T G L+ L L
Sbjct: 161 LRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKETADGTPALEYLGL 220
Query: 334 SDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDT 389
D Q + LRH++ GLT+L+SINLSF ++D L+ LA ++ L+ LNL A I+D
Sbjct: 221 QDCQRLSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDI 280
Query: 390 GLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDL 445
G+A LT + + LD+ F +I D ++ + +L+SL + +TD G+ I K L
Sbjct: 281 GMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSL 340
Query: 446 SSLTLLNLSQNCNLTDKTLELIS 468
L LN+ Q +TDK LE ++
Sbjct: 341 HDLETLNIGQCARVTDKGLEYLA 363
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 53/260 (20%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSNLTSLSFRRNNAIT 120
G + D NL++LD + C Q++D L +HL+ G SN+T+ + T
Sbjct: 151 GYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKE--T 208
Query: 121 AQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A G A + GL + +L E I GL +LK S+N+ +C +TDS +K L+
Sbjct: 209 ADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLK------SINLSFCVSVTDSGLKHLAK 262
Query: 179 LTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+T L+ L + +C ++D G+AYL G +I S+ C I + Q LT +
Sbjct: 263 MTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKI-----------ADQALTHI 311
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGF-NEITDE 293
+ L L L+L+ CQ++D+G K +K + L+ LN+G +TD+
Sbjct: 312 S--------------QGLFHLKSLSLSACQITDEGLAKIAKSLHDLETLNIGQCARVTDK 357
Query: 294 CLVHLKG-LTNLESLNLDSC 312
L +L L NL +++L C
Sbjct: 358 GLEYLADELNNLRAIDLYGC 377
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++D L H+ + ++L+S++ +FC+ ++D GL+HL ++ L L+ R + I+ GM
Sbjct: 226 LSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYL 285
Query: 128 A-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G ++ LD+ C +I L ++ +GL L+SL++ C + K L +L++
Sbjct: 286 TEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345
Query: 185 LQI-SCSKVTDSGIAYL 200
L I C++VTD G+ YL
Sbjct: 346 LNIGQCARVTDKGLEYL 362
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 105/201 (52%), Gaps = 17/201 (8%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-R 384
L C ++D S G + L NL +++LS ++D SL ++A L +++ L L
Sbjct: 140 LGCYNITDI---SLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCS 196
Query: 385 QITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDA 437
IT+T + + G L+ G R++D ++ + +L+S L C +TD+
Sbjct: 197 NITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSFCVS-VTDS 255
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPL 494
G+KH+ ++ L LNL N++D + L G + ++SL+VS +I L H+ + L
Sbjct: 256 GLKHLAKMTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGL 315
Query: 495 KNLRSLTLESCKVTANDIKRL 515
+L+SL+L +C++T + ++
Sbjct: 316 FHLKSLSLSACQITDEGLAKI 336
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
L++L L ++D M + GS+++S+D+S D + D L H+ + +L+SL +
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSA 325
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
C QI+D GL + + L +L +L+ + +T +G++ A L NL +DL CTR+
Sbjct: 326 C-QITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGCTRL 380
>gi|290980964|ref|XP_002673201.1| predicted protein [Naegleria gruberi]
gi|284086783|gb|EFC40457.1| predicted protein [Naegleria gruberi]
Length = 336
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 12/239 (5%)
Query: 294 CLVHLKGLT--------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
C HLKG T + L L+ GI + G++ ++G+ LK L++ + ++ ++
Sbjct: 48 CGHHLKGATIKPLTMLKQVTDLVLNENGISELGVIYISGMIQLKSLDIRNNEINVESAKY 107
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
++ L L+S+++S ++ L + G+ +L L +D I G ++ + LT L +
Sbjct: 108 ITQLRKLQSLSVSVR--NNEVLTLIGGMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHI 165
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+ GA + + K L L I + G +I +L LT L + NC + D+ +
Sbjct: 166 SNNSLLSEGAKLISSMKKLTELVITNNNIGIMGTFYISELKELTKLCIGFNC-IGDEGAK 224
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNL 523
ISGL LV LNV+ + I AG + + L+NL L+ + A K + Q R+L L
Sbjct: 225 HISGLKKLVDLNVTWNEIGLAGAKSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYL 283
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 149/327 (45%), Gaps = 15/327 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCS 190
N+V L ER + LK + +L + I C + + + +KPL+ L + L ++ +
Sbjct: 17 NVVSLRTERVSDFPKFCTILKSMNQLRRVEI--CGHHLKGATIKPLTMLKQVTDLVLNEN 74
Query: 191 KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV----FLTSLQKLTLLNLEGCPVTAAC 246
+++ G+ Y+ G+ L S+ IR ++V ++T L+KL L++
Sbjct: 75 GISELGVIYISGM------IQLKSLDIRNNEINVESAKYITQLRKLQSLSV--SVRNNEV 126
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
L + + +L L ++R + DG + S++ L L++ N + E + + L
Sbjct: 127 LTLIGGMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHISNNSLLSEGAKLISSMKKLTE 186
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L + + IG G ++ L L L + +G G +H+SGL L +N+++ I
Sbjct: 187 LVITNNNIGIMGTFYISELKELTKLCIGFNCIGDEGAKHISGLKKLVDLNVTWNEIGLAG 246
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+ + L +L L+ I G A++ L LT+LD+ G I D G + L +
Sbjct: 247 AKSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYLDIVGNPIGDEGGLAISELTKLTT 306
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNL 453
L I L++ + +K + L + +L
Sbjct: 307 LFIGVYSLSNCSIDQLKKMKQLRVSDL 333
>gi|300704108|ref|YP_003745710.1| leucine-rich-repeat type III effector protein (gala4) [Ralstonia
solanacearum CFBP2957]
gi|299071771|emb|CBJ43095.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum CFBP2957]
Length = 461
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 118/257 (45%), Gaps = 3/257 (1%)
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
L L++ GC + A L+ +L LNL R + D G F++ L LN+ N I
Sbjct: 169 PLDRLDVSGCELNADSARLLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNGI 228
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
+ L T + +L++ + IGDEG + L L L+ SD +G G + L+ T
Sbjct: 229 GPAGVRALAANTTITTLDISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATST 288
Query: 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L S++LS+ I + L ++L++L+ ++ L + T LT L+L I
Sbjct: 289 TLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAI 348
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
++GA L L + G+ V D LT L+LS N + D ++++
Sbjct: 349 GNAGARAFGANTTLVELNLSNNGIER--VPEWADNGKLTTLDLSNN-QIGDTAAQVLAAS 405
Query: 471 TGLVSLNVSNSRITSAG 487
L +LNV ++RI G
Sbjct: 406 RTLTTLNVGSNRIGDTG 422
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 119/269 (44%), Gaps = 21/269 (7%)
Query: 228 SLQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
S+Q+LT+ N +G P L L+ +G +L R SL+
Sbjct: 100 SIQQLTITNRKGSGGIPSPDDYPALRKLTLVGPFTDADLQRLP------------PSLRE 147
Query: 283 LNLGFNE--ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
L+L E IT + HL L L+ L++ C + + L G L L L +
Sbjct: 148 LDLSLCEGPITAVGIAHLLALP-LDRLDVSGCELNADSARLLAGHPTLTTLNLRRNAIDD 206
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+G+ + L ++N+S GI +R LA +++ +L++ +I D G AL S T L
Sbjct: 207 AGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISNNEIGDEGALALASNTTL 266
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
T LD I G L L SL++ + GV+ + ++L L+ N L
Sbjct: 267 TRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGN-ELG 325
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ EL++ T L LN+S++ I +AG R
Sbjct: 326 HREAELLAANTTLTVLNLSSNAIGNAGAR 354
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 152/363 (41%), Gaps = 40/363 (11%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----ITAQGMK 125
TD+ L L +L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 134 TDADLQRLP--PSLRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCELNADSAR 186
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I + ++ L+ T + +L
Sbjct: 187 LLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAANTTITTL 245
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAA 245
IS +++ D G + L S LT L+ C +
Sbjct: 246 DISNNEIGDEGA--------------------------LALASNTTLTRLDASDCGIGPE 279
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+L+ +L L+L+ + +G E + +L+ L+ NE+ L T L
Sbjct: 280 GTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGNELGHREAELLAANTTLT 339
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
LNL S IG+ G N +EL+ + G + + L +++LS I D
Sbjct: 340 VLNLSSNAIGNAGARAFG--ANTTLVELNLSNNGIERVPEWADNGKLTTLDLSNNQIGDT 397
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
+ + LA +L +LN+ + +I DTG AL T LT L++ RI +G L L
Sbjct: 398 AAQVLAASRTLTTLNVGSNRIGDTGACALAGNTTLTTLNVSLNRIGKAGMLALAANTTLE 457
Query: 426 SLE 428
LE
Sbjct: 458 KLE 460
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 144/344 (41%), Gaps = 52/344 (15%)
Query: 168 ITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLSISSVIFILCSM---IIRLFCL 222
TD+D++ L +L+ L +S +T GIA+L L + + C + RL
Sbjct: 133 FTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLALPLDRLDVSGCELNADSARLLAG 190
Query: 223 HVFLTSL------------------QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264
H LT+L +KLT LN+ + A + +L+A ++ L+++
Sbjct: 191 HPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISN- 249
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
NEI DE + L T L L+ CGIG EG L
Sbjct: 250 -----------------------NEIGDEGALALASNTTLTRLDASDCGIGPEGTQALAT 286
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L L+LS + + G+ L T L +++ + LA ++L LNL +
Sbjct: 287 STTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSN 346
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
I + G A + T L L+L I + + N K L +L++ + D + +
Sbjct: 347 AIGNAGARAFGANTTLVELNLSNNGI-ERVPEWADNGK-LTTLDLSNNQIGDTAAQVLAA 404
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+LT LN+ N + D ++G T L +LNVS +RI AG+
Sbjct: 405 SRTLTTLNVGSN-RIGDTGACALAGNTTLTTLNVSLNRIGKAGM 447
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 133/326 (40%), Gaps = 36/326 (11%)
Query: 57 SSLLSVDLS--GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL +DLS +T G+ HL L LD + C +++ L G LT+L+ R
Sbjct: 143 PSLRELDLSLCEGPITAVGIAHLLALP-LDRLDVSGC-ELNADSARLLAGHPTLTTLNLR 200
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
RN AI G+ AFA L L++ G+ L + +L+I N I D
Sbjct: 201 RN-AIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDIS-NNEIGDEGAL 258
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLK--------GLSISSVIFILCSMIIR---LFCLH 223
L+ T L L S + G L LS +++ + R L LH
Sbjct: 259 ALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLH 318
Query: 224 V-----------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
L + LT+LNL + A + A +L LNL S++G E
Sbjct: 319 ACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNL-----SNNGIE 373
Query: 273 KFSKI---GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
+ + G L L+L N+I D L L +LN+ S IGD G L G L
Sbjct: 374 RVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGACALAGNTTLT 433
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESI 355
L +S ++G +G+ L+ T LE +
Sbjct: 434 TLNVSLNRIGKAGMLALAANTTLEKL 459
>gi|451982090|ref|ZP_21930421.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
gi|451760644|emb|CCQ91701.1| exproted hypothetical protein [Nitrospina gracilis 3/211]
Length = 323
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 103/221 (46%), Gaps = 18/221 (8%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV-- 282
+L +LQ L L N P AA L S + L +LNL Q+ G E + +LK
Sbjct: 94 YLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTLKALE 153
Query: 283 -LNLGFNEITDECLVHLKGLTNLES---LNLDSCGIGDEGLVNLTG---LCNLKCLELSD 335
L+L N I D L+ L LE L LD G+GD GL L L NL+ L LS
Sbjct: 154 YLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVLSLSH 213
Query: 336 TQVGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDT 389
++G G + L+ + L + L I D ++ LA +L+ L+L IT+T
Sbjct: 214 NEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNGITET 273
Query: 390 G---LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
G LA LT L L L+G I ++G ++ NL+++
Sbjct: 274 GAHDLAGSPVLTRLNRLYLWGNEIGNAGVRAIKKSDNLKNV 314
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 29/286 (10%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------KIGSLKVLNLGFNEITDECL 295
+ A L L G+ LN + L DDG + + K+ +L + + GF + L
Sbjct: 31 INAIILKELKQNGTHLKLNFS-GMLGDDGVRQLARSRLLKKVETLDLNSHGFGNAGAQGL 89
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSG---L 349
K L NL++LNL + IG EG L +L L L Q+G SG L+ L
Sbjct: 90 ADSKYLPNLQTLNLFNNRIGPEGAAALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTL 149
Query: 350 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAALTS---LTGLTHL 403
LE ++LS GI D L LA L ++ L LD + D GLAAL S L L L
Sbjct: 150 KALEYLDLSGNGIGDPGLIALARSPVLERIRILRLDKNGVGDRGLAALASSPYLGNLEVL 209
Query: 404 DLFGARITDSGAAYLRN---FKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNLSQNC 457
L I GA L + LR L + + D GVKH+ + +L L+L N
Sbjct: 210 SLSHNEIGQEGAKVLAESPYIRKLRQLRLERNRIGDVGVKHLAESEAFQNLEELDLQWNG 269
Query: 458 NLTDKTLELISG---LTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+T+ ++G LT L L + + I +AG+R +K NL+++
Sbjct: 270 -ITETGAHDLAGSPVLTRLNRLYLWGNEIGNAGVRAIKKSDNLKNV 314
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 23/208 (11%)
Query: 338 VGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGL 391
+G G+R L+ L +E+++L+ G + + LA L +L++LNL +I G
Sbjct: 54 LGDDGVRQLARSRLLKKVETLDLNSHGFGNAGAQGLADSKYLPNLQTLNLFNNRIGPEGA 113
Query: 392 AALTS---LTGLTHLDLFGARITDSGAAYLRNFKNLRSLE---ICGGGLTDAGVKHIKD- 444
AAL S L+HL+L+G +I SGA L N L++LE + G G+ D G+ +
Sbjct: 114 AALASSNKYPHLSHLNLWGNQIGPSGAEALANSDTLKALEYLDLSGNGIGDPGLIALARS 173
Query: 445 --LSSLTLLNLSQNCNLTDKTLELISG---LTGLVSLNVSNSRITSAGLRHLKP---LKN 496
L + +L L +N + D+ L ++ L L L++S++ I G + L ++
Sbjct: 174 PVLERIRILRLDKNG-VGDRGLAALASSPYLGNLEVLSLSHNEIGQEGAKVLAESPYIRK 232
Query: 497 LRSLTLESCKVTANDIKRL-QSRDLPNL 523
LR L LE ++ +K L +S NL
Sbjct: 233 LRQLRLERNRIGDVGVKHLAESEAFQNL 260
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 40 QYPGVN--DKWMDVIASQGSSLLS----------VDLSGSDVTDSGLIHLKDCSNLQ--- 84
+YP ++ + W + I G+ L+ +DLSG+ + D GLI L L+
Sbjct: 121 KYPHLSHLNLWGNQIGPSGAEALANSDTLKALEYLDLSGNGIGDPGLIALARSPVLERIR 180
Query: 85 --SLDFNFCIQISDGGLEHLRG---LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
LD N + D GL L L NL LS +N I +G K A + KL
Sbjct: 181 ILRLDKN---GVGDRGLAALASSPYLGNLEVLSL-SHNEIGQEGAKVLAESPYIRKLRQL 236
Query: 140 RCTRIHGGLVNLKGLMK------LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCS 190
R R G V +K L + LE L+++W N IT++ L+G LT L L + +
Sbjct: 237 RLERNRIGDVGVKHLAESEAFQNLEELDLQW-NGITETGAHDLAGSPVLTRLNRLYLWGN 295
Query: 191 KVTDSGIAYLK 201
++ ++G+ +K
Sbjct: 296 EIGNAGVRAIK 306
>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa]
gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]
Length = 1228
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 150/345 (43%), Gaps = 49/345 (14%)
Query: 83 LQSLD--FNFCIQISDG-GLEHLRG-LSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLD 137
LQSLD +N + S+ G E L L L L RN +G + F GL L LD
Sbjct: 97 LQSLDLSYNGLVGCSENEGFEVLSSKLRKLEVLDLTRNRFNNDKGILSCFNGLSALKSLD 156
Query: 138 LERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L GL L L KLE+L++ C DS ++G ++LKSL +S ++VT SG
Sbjct: 157 LSDNQLTGSGLKVLSSRLKKLENLHLSANQC-NDSIFSSITGFSSLKSLDLSYNEVTGSG 215
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
L V + L++L L+L + SL+ SL
Sbjct: 216 -------------------------LKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSL 250
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNL--------GFNEITDECLVHLKGLTNLESLN 308
LNL+ QL+ K G L + V + GL NLE L+
Sbjct: 251 KSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELH 310
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSL 367
L S + + L +L+G LK L+LS + GS+GL+ GL NLE + L F ++ L
Sbjct: 311 LYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGSTGLK---GLRNLEELYLGFNKFNNSIL 367
Query: 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
L+G S+LKSL+L + T + L GL +L+ TD
Sbjct: 368 SSLSGFSTLKSLDLSNNKFTGS-----IGLKGLRNLETLNLEYTD 407
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 316 DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGL 373
D+G+++ GL LK L+LSD Q+ SGL+ LS L LE+++LS +D + G
Sbjct: 139 DKGILSCFNGLSALKSLDLSDNQLTGSGLKVLSSRLKKLENLHLSANQCNDSIFSSITGF 198
Query: 374 SSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
SSLKSL+L ++T +GL L+S L L +LDL + DS + L F +L+SL +
Sbjct: 199 SSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYN 258
Query: 433 GLTDAGVKHIKDLSSLTLLN-------LSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
LT + + I+ + L L + N L+SGL L L++ ++++ +
Sbjct: 259 QLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNN 318
Query: 486 AGLRHLKPLKNLRSLTLESCKVTA 509
L L L+SL L K T
Sbjct: 319 NILSSLSGFSTLKSLDLSYNKFTG 342
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 66/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLI----HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+L S+DLS + +T SGL LK NL L N C +D + G S+L SL
Sbjct: 150 SALKSLDLSDNQLTGSGLKVLSSRLKKLENLH-LSANQC---NDSIFSSITGFSSLKSLD 205
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N +T G+K + L +LE+L++ C DS
Sbjct: 206 LSYN-EVTGSGLKVLS-----------------------SRLKRLENLDLSDNQC-NDSI 240
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGI------AYLKGLSISSVIFILCSMIIRLFCLHVFL 226
L+G ++LKSL +S +++T S + Y L + I L L V +
Sbjct: 241 FSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLV 300
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 286
+ L+ L L+L + L SLS +L L+L+ + + G + +L+ L LG
Sbjct: 301 SGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFT--GSTGLKGLRNLEELYLG 358
Query: 287 FNEITDECL----------------------VHLKGLTNLESLNLDSCGIGDEGLV-NLT 323
FN+ + L + LKGL NLE+LNL+ + L+ +L
Sbjct: 359 FNKFNNSILSSLSGFSTLKSLDLSNNKFTGSIGLKGLRNLETLNLEYTDFKESILIESLG 418
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L +LK L S ++ G + LS ++LE + L ++ + LR + LS+LK L+L
Sbjct: 419 ALPSLKTLYASYSKFKHFG-KGLSNSSSLEEVFLYYSYLPASFLRNIGHLSTLKVLSLAG 477
Query: 384 RQITDTGLA-ALTSLTGLTHLDL 405
+ T A L L HL L
Sbjct: 478 VDFSSTLPAEGWCELKNLEHLFL 500
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 16/191 (8%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
V+ S +L + L + + ++ L L S L+SLD ++ GL+ LR L L
Sbjct: 296 FQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGSTGLKGLRNLEEL 355
Query: 109 TSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
L F + NN+I + + +G L LDL G + LKGL LE+LN+++ +
Sbjct: 356 Y-LGFNKFNNSI----LSSLSGFSTLKSLDLS--NNKFTGSIGLKGLRNLETLNLEYTDF 408
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSV---IFILCSMIIRLFCLHV 224
++ L L +LK+L S SK G KGLS SS +F+ S + F ++
Sbjct: 409 KESILIESLGALPSLKTLYASYSKFKHFG----KGLSNSSSLEEVFLYYSYLPASFLRNI 464
Query: 225 -FLTSLQKLTL 234
L++L+ L+L
Sbjct: 465 GHLSTLKVLSL 475
>gi|326507660|dbj|BAK03223.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 454
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 131/468 (27%), Positives = 204/468 (43%), Gaps = 86/468 (18%)
Query: 82 NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+L+ LD + C ++ G+ + + L NL L+ +TA K F L L L LE
Sbjct: 41 SLRVLDMSTCRNVTHTGVSSVVKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEG 100
Query: 141 CTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCSK-VTDSGI 197
C + GL ++ + L L++ C+ +TD+D+ +S L NL L I+C++ +TD +
Sbjct: 101 CKFMADGLKHIGISCVSLRELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITDVSL 160
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
A +I+S L S+ I C H S + L L+ C L
Sbjct: 161 A-----AITSSCHSLISLRIE-SCSHF---SSEGLRLIGKRCC--------------HLE 197
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNL-DSCGI 314
L++ L D+G + S L L +G I+D+ L+H+ K L ++L S GI
Sbjct: 198 ELDITDSDLDDEGLKALSGCSKLSSLKIGICMRISDQGLIHIGKSCPELRDIDLYRSGGI 257
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 373
DEG+ TQ+ G LESINLS+ T I+D SL L+
Sbjct: 258 SDEGV----------------TQIA-------QGCPMLESINLSYCTEITDVSLMSLSKC 294
Query: 374 SSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGA-RITDSGAAYLRNFKN-LRSLEI 429
+ L +L + I+ GL+ + L LD+ I D G +L F + LR + +
Sbjct: 295 AKLNTLEIRGCPSISSAGLSEIAIGCRLLAKLDVKKCFAINDVGMFFLSQFSHSLRQINL 354
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG---LVSLNVSN--SRIT 484
+TD G LL+LS C L + T+ ++G+T L +L VS +R+
Sbjct: 355 SYCSVTDIG-----------LLSLSSICGLQNMTIVHLAGITPNGLLAALMVSGGLTRVK 403
Query: 485 -SAGLRHLKPLKNLRSLTLESC---------KVTAN--DIKRLQSRDL 520
A R + P L+ + C KV DI + QSRD+
Sbjct: 404 LHAAFRSMMPPHMLKVVEARGCAFQWIDKPFKVEQERCDIWQQQSRDV 451
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 11/237 (4%)
Query: 13 ELVYSRCLTEVSLEAFRDC--ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
++ +R +T+VSL A +L L + + + + +I + L +D++ SD+
Sbjct: 148 DITCNRNITDVSLAAITSSCHSLISLRIESCSHFSSEGLRLIGKRCCHLEELDITDSDLD 207
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA- 128
D GL L CS L SL C++ISD GL H+ + L + R+ I+ +G+ A
Sbjct: 208 DEGLKALSGCSKLSSLKIGICMRISDQGLIHIGKSCPELRDIDLYRSGGISDEGVTQIAQ 267
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
G L ++L CT I L++L KL +L I+ C I+ + + ++ G L L
Sbjct: 268 GCPMLESINLSYCTEITDVSLMSLSKCAKLNTLEIRGCPSISSAGLSEIAIGCRLLAKLD 327
Query: 187 I-SCSKVTDSGIAYLKGLSIS--SVIFILCSMI-IRLFCLHVFLTSLQKLTLLNLEG 239
+ C + D G+ +L S S + CS+ I L L + LQ +T+++L G
Sbjct: 328 VKKCFAINDVGMFFLSQFSHSLRQINLSYCSVTDIGLLSLSS-ICGLQNMTIVHLAG 383
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 290 ITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLC--NLKCLELSD----TQVGSSG 342
I+ +CL + L NLE L L C GI D+ L L +L+ L++S T G S
Sbjct: 1 ISKDCLPAIMELPNLEVLALVGCVGIDDDALSGLENESSKSLRVLDMSTCRNVTHTGVSS 60
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAAL-TSLTGL 400
+ + L NL +NLS+ S+ K L L++L L+ + GL + S L
Sbjct: 61 V--VKALPNLLELNLSYCCNVTASMGKCFQMLPKLQTLKLEGCKFMADGLKHIGISCVSL 118
Query: 401 THLDLFGAR-ITDSGAAY-LRNFKNLRSLEI-CGGGLTDAGVKHI-KDLSSLTLLNLSQN 456
L L +TD+ ++ + KNL L+I C +TD + I SL L +
Sbjct: 119 RELSLSKCSGVTDTDLSFVVSRLKNLLKLDITCNRNITDVSLAAITSSCHSLISLRIESC 178
Query: 457 CNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+ + + L LI L L++++S + GL+ L L SL + C
Sbjct: 179 SHFSSEGLRLIGKRCCHLEELDITDSDLDDEGLKALSGCSKLSSLKIGIC 228
>gi|241724224|ref|XP_002413721.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215507537|gb|EEC17029.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 315
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 163/361 (45%), Gaps = 86/361 (23%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
V+D GL +L NL SLD + C+ ++D GLEH+ +S+L L+ +T+Q M
Sbjct: 12 VSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGCEDLTSQSMFHL 71
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---GLTNLKS 184
A +L L I +CN I D+ + ++ GL +L +
Sbjct: 72 A-----------------------TARFRLNCLIISYCNQIEDTGIHMINRGQGLVSLTT 108
Query: 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
L ++ +TD G L V L+ LT LN+ C +
Sbjct: 109 LNVNACPITDVG-------------------------LSVVAEKLRDLTALNISECEYVS 143
Query: 245 ACLDSLSALGS----LFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHL 298
D +S + + L ++N+ C L++ + +++ SL+V+NL G +IT
Sbjct: 144 K--DGISVVAANLRKLRFINMRLCTGLTNISLKHLARMSSLEVINLKGCTKITG------ 195
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINL 357
KG+ + S G G ++ L++S T +G +GLR+++ G+ L S++L
Sbjct: 196 KGMAFMAS------GEGQSSVLE---------LDVSFTSIGDTGLRYIAQGMQKLRSLSL 240
Query: 358 SFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARITDS 413
ISD L ++A L +L +L + +ITD G+ + +L L +DL G +RIT +
Sbjct: 241 CGCLISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRLRQIDLKGCSRITSA 300
Query: 414 G 414
G
Sbjct: 301 G 301
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 148/310 (47%), Gaps = 60/310 (19%)
Query: 232 LTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GF 287
L L LE C V+ L+ LS L +L L+L+ C ++D G E +KI SLK L L G
Sbjct: 1 LEYLGLEDCALVSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGC 60
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 346
++T + + HL T L CL +S Q+ +G+ H+
Sbjct: 61 EDLTSQSMFHLA-----------------------TARFRLNCLIISYCNQIEDTGI-HM 96
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDL 405
I+ G GL SL +LN++A ITD GL+ + L LT L++
Sbjct: 97 ---------------INRGQ-----GLVSLTTLNVNACPITDVGLSVVAEKLRDLTALNI 136
Query: 406 FGARIT--DSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
D + N + LR ++ +C G LT+ +KH+ +SSL ++NL +T
Sbjct: 137 SECEYVSKDGISVVAANLRKLRFINMRLCTG-LTNISLKHLARMSSLEVINLKGCTKITG 195
Query: 462 KTLELIS---GLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQS 517
K + ++ G + ++ L+VS + I GLR++ + ++ LRSL+L C ++ + R+ +
Sbjct: 196 KGMAFMASGEGQSSVLELDVSFTSIGDTGLRYIAQGMQKLRSLSLCGCLISDKGLTRI-A 254
Query: 518 RDLPNLVSFR 527
R+L L + +
Sbjct: 255 RNLHALNTLK 264
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 20 LTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIAS-QG-SSLLSVDLSGSDVTDSGLIH 76
LT +SL+ R +L+ + L + K M +AS +G SS+L +D+S + + D+GL +
Sbjct: 168 LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLRY 227
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
+ + L+SL C+ ISD GL + R L L +L R + IT G+K A L L
Sbjct: 228 IAQGMQKLRSLSLCGCL-ISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRL 286
Query: 134 VKLDLERCTRI 144
++DL+ C+RI
Sbjct: 287 RQIDLKGCSRI 297
>gi|320167357|gb|EFW44256.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 766
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 127/283 (44%), Gaps = 7/283 (2%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L L L L P+T+ ++ S L L YL+L+ QL+D F+ + +L LNL F
Sbjct: 106 LTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLNLEFT 165
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+IT L L++L+L++ I TGL L LEL + Q+ S +
Sbjct: 166 QITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELDNNQITSISALAFAN 225
Query: 349 LTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LT L + L+ TGIS+ + GL++L +L L QIT A T LT LT L L
Sbjct: 226 LTALSYLGLANNRITGISENTFT---GLTALAALYLLDNQITSISANAFTDLTALTTLSL 282
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+IT A L L + +T L++L L+L+ N +T +
Sbjct: 283 ALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLDLALN-QITGISTN 341
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+GLT L L + N++I S L L LTL + T
Sbjct: 342 AFTGLTTLAVLRLDNNQIASISANAFTGLTMLFYLTLHNNSFT 384
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 115/274 (41%), Gaps = 25/274 (9%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
++L+ +TA D+ + L SL L L+ ++ FS + L L+L + ++TD
Sbjct: 88 VDLQSNQITAISPDAFAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTDIS 147
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L SLNL+ I T L LK L L++ Q+ S +GLT
Sbjct: 148 ANAFTTLPALVSLNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLT---- 203
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+L SL LD QIT A +LT L++L L RIT
Sbjct: 204 --------------------ALVSLELDNNQITSISALAFANLTALSYLGLANNRITGIS 243
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
L +L + +T DL++LT L+L+ N +T + +GLT L
Sbjct: 244 ENTFTGLTALAALYLLDNQITSISANAFTDLTALTTLSLALN-QITSISANAFTGLTTLA 302
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L+++ ++ITS L L L L ++T
Sbjct: 303 GLSLALNQITSISTNAFTGLTTLAGLDLALNQIT 336
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 1/188 (0%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
GL +L L LSD + S S LT L ++LS+T ++D S L +L SLNL
Sbjct: 103 FAGLTSLNSLYLSDNPITSISANAFSDLTELSYLHLSYTQLTDISANAFTTLPALVSLNL 162
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+ QIT AA TSL L +L L +IT + L SLE+ +T
Sbjct: 163 EFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELDNNQITSISALA 222
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+L++L+ L L+ N +T + +GLT L +L + +++ITS L L +L+
Sbjct: 223 FANLTALSYLGLANN-RITGISENTFTGLTALAALYLLDNQITSISANAFTDLTALTTLS 281
Query: 502 LESCKVTA 509
L ++T+
Sbjct: 282 LALNQITS 289
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 119/297 (40%), Gaps = 51/297 (17%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
++N ITA AFAGL +L L L N IT
Sbjct: 91 QSNQITAISPDAFAGLTSLNSLYLSD-------------------------NPITSISAN 125
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
S LT L L +S +++TD IS+ F T+L L
Sbjct: 126 AFSDLTELSYLHLSYTQLTD----------ISANAF----------------TTLPALVS 159
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LNLE +T + ++L L L+LN Q++ F+ + +L L L N+IT
Sbjct: 160 LNLEFTQITTISAAAFTSLAKLKNLSLNNNQITSVPESAFTGLTALVSLELDNNQITSIS 219
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
+ LT L L L + I TGL L L L D Q+ S + LT L +
Sbjct: 220 ALAFANLTALSYLGLANNRITGISENTFTGLTALAALYLLDNQITSISANAFTDLTALTT 279
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
++L+ I+ S GL++L L+L QIT A T LT L LDL +IT
Sbjct: 280 LSLALNQITSISANAFTGLTTLAGLSLALNQITSISTNAFTGLTTLAGLDLALNQIT 336
>gi|83749483|ref|ZP_00946473.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83723837|gb|EAP71025.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 546
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 2/242 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L A L LN+NR ++ G + +L L++G N I D + L L +LN+
Sbjct: 270 LGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNV 329
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ +G G+ L L L + D +G G + L+ T+L +++ GI +
Sbjct: 330 ERAAVGAHGVRALADSKTLTSLRI-DNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKA 388
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
LA + L +LNL I D G A + T L L + ++D+GA L K L +L+
Sbjct: 389 LAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDA 448
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ DAG + + +LT L++S N + + ++ T L SL++ N+R+ AG+R
Sbjct: 449 GDNAIKDAGARALAANRTLTTLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVR 507
Query: 490 HL 491
L
Sbjct: 508 AL 509
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 1/228 (0%)
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ LT L++ G + A +++L A L LN+ R + G + +L L + N
Sbjct: 298 KTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLTSLRID-NN 356
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
I DE L T+L +L+ +S GIG G L L L L +G +G +
Sbjct: 357 IGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLAN 416
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
T L S+++ G+SD +LA +L +L+ I D G AL + LT LD+
Sbjct: 417 TTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNE 476
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 477 IGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 524
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 114/284 (40%), Gaps = 70/284 (24%)
Query: 228 SLQKLTLL------NLEGCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIGS 279
+L+KLTL +L G P T L L+L+RC+ ++ G S++
Sbjct: 133 ALEKLTLAGAFTDADLAGLPPT------------LKELDLSRCRGCITAAGIAHLSRL-P 179
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L LNL N I L L L++ CGIG E L L L S VG
Sbjct: 180 LVRLNLSGNRIGPVEARLLANHPTLTELDVSHCGIGPEEARALAASARLTTLNASRNGVG 239
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G+R L L S++LS G+ D ++L L +LN++ +I
Sbjct: 240 GEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRI------------- 286
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
D+ GAR L + K L SL+I G + DAGV+ LL +Q
Sbjct: 287 ----DVQGAR-------ALADCKTLTSLDIGGNSIGDAGVE--------ALLANAQ---- 323
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
L +LNV + + + G+R L K L SL ++
Sbjct: 324 -------------LTTLNVERAAVGAHGVRALADSKTLTSLRID 354
>gi|195121256|ref|XP_002005136.1| GI19235 [Drosophila mojavensis]
gi|193910204|gb|EDW09071.1| GI19235 [Drosophila mojavensis]
Length = 545
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 158/305 (51%), Gaps = 28/305 (9%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IG 278
+ + LT LNL GC A ++ A L +L L+L+ C Q++D + ++ +
Sbjct: 236 LVVGVPALTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLK 294
Query: 279 SLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------N 327
+L+ L LG N L+ GL L LNL SC I D+G+ +L G
Sbjct: 295 NLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQ 354
Query: 328 LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA- 383
L+ L L D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL +
Sbjct: 355 LEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC 414
Query: 384 RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVK 440
I+D G+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+
Sbjct: 415 DNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGML 474
Query: 441 HI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNL 497
I K L L LN+ Q +TDK L+ L L+ L ++++ ++++S G+ + L L
Sbjct: 475 KIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKL 534
Query: 498 RSLTL 502
+ L L
Sbjct: 535 QKLNL 539
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 75/324 (23%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +++L G ++T++GL+ + L+ L+ C ISD G+ H
Sbjct: 281 ITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGH 340
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLES 159
L G S T+ G + L L L+ C R+ + +GL L+S
Sbjct: 341 LAGFSRETA-----------------EGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKS 383
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMI 216
+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G I+S+ C I
Sbjct: 384 INLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKI 443
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
S Q LT + L L L+LN+CQ++D G K +
Sbjct: 444 -----------SDQALTHIA--------------QGLYRLRSLSLNQCQITDQGMLKIA- 477
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELS 334
K L LE+LN+ C I D+GL L L NLK ++L
Sbjct: 478 ----------------------KSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLY 515
Query: 335 D-TQVGSSGLRHLSGLTNLESINL 357
TQ+ S G+ + L L+ +NL
Sbjct: 516 GCTQLSSKGIDIIMKLPKLQKLNL 539
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 171/377 (45%), Gaps = 82/377 (21%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 219 RGIKKVQILSLRRSLKDLVVGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 270
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
++L++ C ITD+ + ++ L NL++L++ C +T++G+ +
Sbjct: 271 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAW------------- 317
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSL--FYLNLNRCQ- 265
L+KL LNL C + A +A G+L YL L CQ
Sbjct: 318 ------------GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQR 365
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 366 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 425
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLN 380
T G SG + S+++SF ISD +L +A GL L+SL+
Sbjct: 426 TE--------------GGSG---------INSLDVSFCDKISDQALTHIAQGLYRLRSLS 462
Query: 381 LDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTD 436
L+ QITD G+ + SL L +L++ +RITD G L + NL+++++ G L+
Sbjct: 463 LNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSS 522
Query: 437 AGVKHIKDLSSLTLLNL 453
G+ I L L LNL
Sbjct: 523 KGIDIIMKLPKLQKLNL 539
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 297
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT----- 401
LE N++ TG+ L GL L+ LNL + I+D G+ L + T
Sbjct: 298 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 353
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 354 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 412
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 413 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 469
>gi|343414400|emb|CCD21001.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 511
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 140/426 (32%), Positives = 196/426 (46%), Gaps = 70/426 (16%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD + C I+D + L L L L IT + + LI L KL+L CT I
Sbjct: 2 LDLSHCTGITD--VSPLTTLIELKELDLNDCTGIT--DVSPLSTLIRLEKLNLSDCTGIT 57
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD----SGIAYL 200
+ L L++LE LN+ C IT D+ PL+ L LK L ++ C+++TD S + L
Sbjct: 58 D-VSPLSTLIRLEKLNLSGCTGIT--DVSPLTTLIELKELDLNDCTRITDVSPLSTLIRL 114
Query: 201 KGLSISSVIFI-----LCSMI-IRLFCLH--------VFLTSLQKLTLLNLEGCPVTAAC 246
+ L +S I L ++I ++ CL LT+L +L L L GC
Sbjct: 115 EKLCLSGCTGITDVSPLTTLIELKELCLSGCTGITDVSPLTTLIELKELGLSGC----TG 170
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS------LKVLNL-GFNEITDECLVHLK 299
+ +S L +L L +L GC + + LKVL L G ITD + L
Sbjct: 171 ITDVSPLTTLIELK----ELGLSGCTGITDVSPLTTLIRLKVLYLIGCTGITD--VSPLT 224
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
L L+ L+L C GI D + LT L LK L LS G +G+ +S LT L + +
Sbjct: 225 TLIELKELDLHDCTGITD--VSPLTTLIELKELGLS----GCTGITDVSPLTTLIRLEVL 278
Query: 359 F----TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITD 412
+ TGI+D S L L LK L+L D ITD ++ LT+L L L L+G RITD
Sbjct: 279 YLIGCTGITDVS--PLTTLIELKELDLHDCTGITD--VSPLTTLIELKELALYGCTRITD 334
Query: 413 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+ L L L + G G+TD V + L L +L L +TD +S LT
Sbjct: 335 --VSPLSALIRLEKLCLSGCTGITD--VSPLTTLIRLEVLYLIGCTGITD-----VSPLT 385
Query: 472 GLVSLN 477
L+ L
Sbjct: 386 TLIELK 391
>gi|51850137|dbj|BAD42410.1| leucine-rich repeat protein [Ralstonia solanacearum]
gi|226237546|dbj|BAH47288.1| type III effector protein [Ralstonia solanacearum]
Length = 493
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 155/338 (45%), Gaps = 15/338 (4%)
Query: 170 DSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
D+D++ L +L+ L + S V+ G+A+L L L + +R +H
Sbjct: 132 DADLEGLPA--SLRELDLFSTRYVSAKGLAHLSKLP-------LVRLKVRANGIHAEAAR 182
Query: 229 LQ----KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
LT L++ G + A +L+A S+ L+ + + G + +L L+
Sbjct: 183 ALAASTTLTALDIRGNGIGDAGAQALAANTSITSLDASFNDIGAAGARALAGNTTLTSLD 242
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
LGFN I DE L L T+L SL + SC IGD G L L ++L+ +G G
Sbjct: 243 LGFNAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAE 302
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404
L+ T L S++L+ ISD LAG ++L SL ++ I G L T L LD
Sbjct: 303 GLAANTVLTSLDLTRNSISDRGAAALAGNTALTSLCVNFNDIYGRGARWLAENTTLASLD 362
Query: 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464
+ RI +GA L ++ L I + DAG + + +LT L S N + +
Sbjct: 363 IGENRIEAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYASDNF-IGTAGV 421
Query: 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ ++ T L SL++ +RI AG++ L L LT+
Sbjct: 422 QALAANTRLTSLSIWGNRIGDAGVKALAANTTLTKLTI 459
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 53/328 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++D+ G+ + D+G L +++ SLD +F I G L G + LTSL
Sbjct: 188 TTLTALDIRGNGIGDAGAQALAANTSITSLDASFN-DIGAAGARALAGNTTLTSLDLGF- 245
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
NAI +G++A A +L L + C G L L S+++ CN I + + L
Sbjct: 246 NAIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLT-CNHIGEEGAEGL 304
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ T L SL ++ + ++D G A L G + LTSL
Sbjct: 305 AANTVLTSLDLTRNSISDRGAAALAG--------------------NTALTSL------- 337
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
C +N N + G ++ +L L++G N I
Sbjct: 338 ---C------------------VNFN--DIYGRGARWLAENTTLASLDIGENRIEAAGAQ 374
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L T++ LN++ IGD G L L L SD +G++G++ L+ T L S++
Sbjct: 375 ALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYASDNFIGTAGVQALAANTRLTSLS 434
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ I D ++ LA ++L L + R
Sbjct: 435 IWGNRIGDAGVKALAANTTLTKLTIGKR 462
>gi|406832962|ref|ZP_11092556.1| hypothetical protein SpalD1_15024 [Schlesneria paludicola DSM
18645]
Length = 236
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+ GL L S++L T I D L+++A L +L +L L ITD GL L S L+ LDL
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
G RITD G L +LR L++ +T G+K + L +L LNL +N + D LE
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNL-ENTKVNDTGLE 186
Query: 466 LISGLTGLVSLNVSNSRITSAG 487
+ L+ +N+ + +T AG
Sbjct: 187 CVHEFKHLIRINLRRTSVTDAG 208
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 13/198 (6%)
Query: 256 LFYLNLNRCQLSDDGCEKF----------SKIGSLKVLNLGF---NEITDECLVHLKGLT 302
+ + N R + D+ +K K+ V+++ F + + L +KGL
Sbjct: 13 VLWPNPARAEDQDEAIKKIRLLRGEVRLDDKLPGTPVVSVSFYGSSRFNGKFLHLVKGLD 72
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
L SL+L IGD L + L NL L LS+ + +GL L L +++L+ T I
Sbjct: 73 QLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDLAGTRI 132
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
+D L++L+ SL+ L+L IT GL L+ L L L+L ++ D+G + FK
Sbjct: 133 TDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFK 192
Query: 423 NLRSLEICGGGLTDAGVK 440
+L + + +TDAG K
Sbjct: 193 HLIRINLRRTSVTDAGQK 210
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 18/191 (9%)
Query: 237 LEGCPVTAAC-----------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L G PV + L + L L L+L + + D ++ +++ +L L L
Sbjct: 44 LPGTPVVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRL 103
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
ITD L+ L+ L +L+L I D+GL L+ +L+ L+LS+T + GL+
Sbjct: 104 SNVPITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKD 163
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
LSGL NL S+NL T ++D L + L +NL +TD G A + + +
Sbjct: 164 LSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFS-------VSM 216
Query: 406 FGARITDSGAA 416
RI DSG+
Sbjct: 217 PNTRIYDSGSG 227
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
Query: 355 INLSFTGIS--DGS-LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
+++SF G S +G L + GL L SL+L I DT L + L LT L L IT
Sbjct: 50 VSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPIT 109
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
D+G LR+ K L +L++ G +TD G+K + SL L+LS+ +T L+ +SGL
Sbjct: 110 DAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETT-ITGMGLKDLSGLP 168
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
L+SLN+ N+++ GL + K+L + L VT
Sbjct: 169 NLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVT 205
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
+ GL L L+L T +G + L+ ++ L NL ++ LS I+D L +L L +L+L
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+ITD GL L+ L +LDL IT G L NL SL + + D G++
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLEC 187
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
+ + L +NL + ++TD +G S+++ N+RI +G
Sbjct: 188 VHEFKHLIRINL-RRTSVTD------AGQKAF-SVSMPNTRIYDSG 225
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
L G + SV F S F LH+ + L +LT L+L + L ++ L +L L
Sbjct: 44 LPGTPVVSVSFYGSSRFNGKF-LHL-VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTL 101
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
L+ ++D G + L L+L ITD+ L L +L L+L I GL
Sbjct: 102 RLSNVPITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETTITGMGL 161
Query: 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
+L+GL NL L L +T+V +GL + +L INL T ++D AG + S+
Sbjct: 162 KDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTD------AGQKAF-SV 214
Query: 380 NLDARQITDTG 390
++ +I D+G
Sbjct: 215 SMPNTRIYDSG 225
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G+ ++SV GS + +HL K L SLD I D L+ + L NLT+L
Sbjct: 46 GTPVVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKT-DIGDTHLKEIAELENLTTLRLS 104
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT G+ L LDL GL L L L++ IT +K
Sbjct: 105 -NVPITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSET-TITGMGLK 162
Query: 175 PLSGLTNLKSLQISCSKVTDSGI 197
LSGL NL SL + +KV D+G+
Sbjct: 163 DLSGLPNLLSLNLENTKVNDTGL 185
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++ LS +TD+GLI L+ L +LD +I+D GL+ L +L L
Sbjct: 96 ENLTTLRLSNVPITDAGLIELRSQKKLSTLDLA-GTRITDDGLKELSVHHSLRYLDLS-E 153
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+K +GL NL+ L+LE GL + L +N++ +TD+ K
Sbjct: 154 TTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRT-SVTDAGQKAF 212
Query: 177 SGLTNLKSLQISCSKVTDSG 196
S+ + +++ DSG
Sbjct: 213 -------SVSMPNTRIYDSG 225
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 20/197 (10%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN-IKW 164
+ + S+SF ++ + + GL L LDL R T I G +LK + +LE+L ++
Sbjct: 47 TPVVSVSFYGSSRFNGKFLHLVKGLDQLTSLDL-RKTDI--GDTHLKEIAELENLTTLRL 103
Query: 165 CNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI-SSVIFI-LCSMIIRLFC 221
N ITD+ + L L +L ++ +++TD G LK LS+ S+ ++ L I
Sbjct: 104 SNVPITDAGLIELRSQKKLSTLDLAGTRITDDG---LKELSVHHSLRYLDLSETTITGMG 160
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS------ 275
L L+ L L LNLE V L+ + L +NL R ++D G + FS
Sbjct: 161 LK-DLSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFSVSMPNT 219
Query: 276 ---KIGSLKVLNLGFNE 289
GS N+G N
Sbjct: 220 RIYDSGSGPAFNVGMNR 236
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
++ L SL++ + D +K I +L +LT L LS N +TD L + L +L+
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLS-NVPITDAGLIELRSQKKLSTLD 126
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 526
++ +RIT GL+ L +LR L L +T +K L LPNL+S
Sbjct: 127 LAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSG--LPNLLSL 173
>gi|320165161|gb|EFW42060.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 641
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 91/215 (42%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+T+ + + L +L YLNLN + F+ + +LK L LG+NE+ D GL
Sbjct: 74 ITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNELADISATAFAGL 133
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T L +L+L S I L L L L Q+ + +GL+ L +NL
Sbjct: 134 TALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQ 193
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
I+ S L++L L L QIT +A T LT L L+LF +IT A
Sbjct: 194 ITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGL 253
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
L L + +T L +LT L L N
Sbjct: 254 SALTQLYLFSNQITSIAANAFTGLPALTALALDGN 288
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 1/207 (0%)
Query: 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362
N SL L++ I TGL L L L+ + S +GLT L+ + L + +
Sbjct: 63 NTTSLELNNNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNEL 122
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
+D S AGL++L +L+L + QIT +A SLT LT+L L ++T+ A
Sbjct: 123 ADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLS 182
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482
L L + +T DL++LTLL L +N +T +GLT L L + N++
Sbjct: 183 ALALLNLESNQITSISANAFTDLTALTLLYLQRN-QITSIPTSAFTGLTALKDLELFNNQ 241
Query: 483 ITSAGLRHLKPLKNLRSLTLESCKVTA 509
IT+ L L L L S ++T+
Sbjct: 242 ITAIAANTFSGLSALTQLYLFSNQITS 268
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 31/259 (11%)
Query: 131 INLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+N L+L + T I G GL L LN+ N I +GLT LK L +
Sbjct: 62 VNTTSLELNNNQITSISAGA--FTGLTALTYLNLN-SNSIRSISANAFTGLTALKHLPLG 118
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+++ D IS+ F L L L+L+ +T+
Sbjct: 119 YNELAD----------ISATAF----------------AGLTALNALHLQSNQITSISAS 152
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+ ++L +L YL L+ QL++ F+ + +L +LNL N+IT LT L L
Sbjct: 153 AFASLTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQITSISANAFTDLTALTLLY 212
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L I TGL LK LEL + Q+ + SGL+ L + L I+ +
Sbjct: 213 LQRNQITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGLSALTQLYLFSNQITSIAAN 272
Query: 369 KLAGLSSLKSLNLDARQIT 387
GL +L +L LD + T
Sbjct: 273 AFTGLPALTALALDGNRFT 291
>gi|87307225|ref|ZP_01089370.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
3645]
gi|87289965|gb|EAQ81854.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
3645]
Length = 378
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%)
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+ +L + DE L L + N+ + L T+V +GL HL+GL LE +NL+ T ++D
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
LR LA L LNL A +++D G+ L SL L HL L+ + T A L
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%)
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
LSD V L L + N+ INL T ++D L LAGL L+ LNL ++TD+GL
Sbjct: 255 LSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLR 314
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
L + L++L+L+ ++D+G +L + +LR L + T K +
Sbjct: 315 YLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
+NR S D + +L + DE L L+ + N+ +NL + D GL
Sbjct: 239 INRVAQSSDA--------KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLE 290
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
+L GL L+ L L+ T+V SGLR+L+ L +NL T +SD + L L SL+ L
Sbjct: 291 HLAGLKQLERLNLAKTKVTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLY 350
Query: 381 L 381
L
Sbjct: 351 L 351
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+L+ + D+ KIG++ +NL E+TD L HL GL LE LNL + D G
Sbjct: 253 YHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSG 312
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLK 377
L L L L L T+V +G+ HL L +L + L T + S ++L A + LK
Sbjct: 313 LRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGLK 372
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%)
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+ +LS + D +L L + ++ +NL ++TD GL L L L L+L ++TDS
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
G YL + L L + ++DAG+ H+ L SL L L Q + +L + + GL
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGL 371
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
+ D A LR N+ + + G +TDAG++H+ L L LNL++ +TD L ++
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKT-KVTDSGLRYLAA 318
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L LN+ + ++ AG+ HL L +LR L L K T K+L S +P L
Sbjct: 319 CEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL-SAAIPGL 371
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
V +S K+ +L PV L L +G++ +NL +++D G E + + L+ L
Sbjct: 242 VAQSSDAKVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERL 301
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
NL ++TD L +L L LNL + + D G+ +L L +L+ L L T+
Sbjct: 302 NLAKTKVTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESA 361
Query: 344 RHLSGLTNLESINL 357
+ LS +NL
Sbjct: 362 KQLSAAIPGLKVNL 375
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L+ + VTDSGL +L C L L+ + ++SD G++HL L +L L + A
Sbjct: 298 LERLNLAKTKVTDSGLRYLAACEKLSYLNL-YATEVSDAGIDHLYSLPSLRHLYLWQTKA 356
Query: 119 ITAQGMKAFAGLINLVKLDL 138
T + K + I +K++L
Sbjct: 357 -TPESAKQLSAAIPGLKVNL 375
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
V S + +++ LS V D L L+ N+ ++ +++D GLEHL GL L
Sbjct: 242 VAQSSDAKVVTYHLSDKPVHDEALAPLRKIGNVVEINL-MGTEVTDAGLEHLAGLKQLER 300
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L+ + +T G++ A L L+L G+ +L L L L + W T
Sbjct: 301 LNLAKTK-VTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYL-WQTKATP 358
Query: 171 SDMKPLSG 178
K LS
Sbjct: 359 ESAKQLSA 366
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 26/131 (19%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
+ D + PL + N+ + + ++VTD+G+ +L GL
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGL------------------------ 295
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
++L LNL VT + L L+A L YLNL ++SD G + + SL+ L L
Sbjct: 296 --KQLERLNLAKTKVTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQ 353
Query: 288 NEITDECLVHL 298
+ T E L
Sbjct: 354 TKATPESAKQL 364
>gi|343421695|emb|CCD18730.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 582
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 126/456 (27%), Positives = 201/456 (44%), Gaps = 49/456 (10%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
L L+ C+ L ++ C I D L L+NL SL + GL N
Sbjct: 74 SLEQLRICTRLTHIEIIMCKGIFD-----LSILANLGSLEVLSVRGSRVHVTGSIGGLKN 128
Query: 133 LVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L +LDL TR+ + L L +N++ C + SD+ PL+ + +L+ L + +
Sbjct: 129 LRELDLSG-TRVQDEVFYELSENPNLTKVNLRQCQGL--SDVSPLADIESLQELDLGLCR 185
Query: 192 VTDSGI---AYLKGLSI---------SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
+ G+ A L L + S +F LC SL+KL NL
Sbjct: 186 SINEGVQDLAELPNLRVLNLEKVNVPSDSLFELCKS-----------RSLEKL---NLSS 231
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
C + LS + +L L+L+ C G + K+ L++LNL +TD L L
Sbjct: 232 CKRLLD-VSPLSEIKTLVELDLSLCCSLFTGVSELGKLQCLRILNLRNTAVTDHSLPGLS 290
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKC---LELSDTQVGSSGLRHLSGLTNLESIN 356
+LE LNL SC GL N++ L +K L+LS+ G+ L L L ++
Sbjct: 291 ESDSLEILNLSSC----RGLTNVSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLK 346
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGA 415
L T I++ SLR + SL+ LDA T + + ++ L L L+L G
Sbjct: 347 LRNTAITNESLRDICESESLE--ELDASSCTALSDVFHISVLNTLVELNLSFCPNLVKGM 404
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+ + LR+L+I G +T+ ++ ++ +SL ++L NLTD + +S ++ L+
Sbjct: 405 EAIASLPFLRALDISGTPITNHCLRGLRKSNSLETVSLRSCNNLTD--VFYLSKISTLLR 462
Query: 476 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
L++ G+ L L LR L LE + AND
Sbjct: 463 LDLGCCISLQKGVGTLGKLPRLRILNLEGTR-AAND 497
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 133/481 (27%), Positives = 206/481 (42%), Gaps = 76/481 (15%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +DLSG+ V D L + NL ++ C +SD + L + +L L
Sbjct: 128 NLRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD--VSPLADIESLQELDLGLCR 185
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+I +G++ A L NL L+LE+ L L LE LN+ C + D+ PLS
Sbjct: 186 SIN-EGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLL--DVSPLS 242
Query: 178 GLTNLKSLQIS--CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
+ L L +S CS T G++ L LQ L +L
Sbjct: 243 EIKTLVELDLSLCCSLFT--GVSELG--------------------------KLQCLRIL 274
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
NL VT L LS SL LNL+ C+ G ++
Sbjct: 275 NLRNTAVTDHSLPGLSESDSLEILNLSSCR--------------------GLTNVSP--- 311
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
LK + +L L+L +C +G+ +L L L L+L +T + + LR + +LE +
Sbjct: 312 --LKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNESLRDICESESLEEL 369
Query: 356 NLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+ S T +SD + ++ L++L LNL G+ A+ SL L LD+ G IT+
Sbjct: 370 DASSCTALSD--VFHISVLNTLVELNLSFCPNLVKGMEAIASLPFLRALDISGTPITNHC 427
Query: 415 AAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLELISGLT 471
LR +L SL C LTD V ++ +S TLL L C ++ K + + L
Sbjct: 428 LRGLRKSNSLETVSLRSC-NNLTD--VFYLSKIS--TLLRLDLGCCISLQKGVGTLGKLP 482
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIKRLQSRDLPNLVSF 526
L LN+ +R + + L ++L L L SC ++ +I+ L+ D+ N VS
Sbjct: 483 RLRILNLEGTRAANDWIIGLSTSRSLAVLILSSCLALSDVSLLANIEPLEELDISNCVSI 542
Query: 527 R 527
R
Sbjct: 543 R 543
>gi|290992631|ref|XP_002678937.1| predicted protein [Naegleria gruberi]
gi|284092552|gb|EFC46193.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 7/198 (3%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
L + G E SK+ L LN+ N+I +L+ L L + N+ + I + L+ L
Sbjct: 2 LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L+ LE+ + S+G+ +LS + + ++ I ++ L L L L++ Q
Sbjct: 62 KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121
Query: 386 ITDTG-------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
+ G + LT + L +LD+ G I D GA L K L+ L + +++ G
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEG 181
Query: 439 VKHIKDLSSLTLLNLSQN 456
+HI L LT LN++ N
Sbjct: 182 AQHISKLEKLTFLNIANN 199
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%)
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+G+ G +++ L L L + + Q+GS+G ++L L L + N+ I L+ L
Sbjct: 2 LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC--- 430
L++L + I G+ L+S+ +HL + I G +L N K L L+I
Sbjct: 62 KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121
Query: 431 ----GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
G + V+ + + L L++ N + D+ + +S L L LNV + I+
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNY-IDDEGAKCLSKLKELKHLNVLRNAISEE 180
Query: 487 GLRHLKPLKNLRSLTLESCKVTANDI 512
G +H+ L+ L L + NDI
Sbjct: 181 GAQHISKLEKLTFLN-----IANNDI 201
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 35/229 (15%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G EH+ L LT L+ + NN I + G K L+ L +L
Sbjct: 6 GAEHISKLKQLTYLNIQ-NNQIGSTGAKY------------------------LRELKQL 40
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217
+ NI N I + LS L L++L+I + + +G+ YL + S + + + I+
Sbjct: 41 TNPNIH-TNDIDSKRAEYLSELKQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIV 99
Query: 218 RLFCLHVFLTSLQKLTLLNLE-------GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+L +L++LT L++ G + + ++ L+ + L YL++ + D+G
Sbjct: 100 TEGV--KWLGNLKQLTYLDISCNQVFIIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEG 157
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
+ SK+ LK LN+ N I++E H+ L L LN+ + IG +G+
Sbjct: 158 AKCLSKLKELKHLNVLRNAISEEGAQHISKLEKLTFLNIANNDIGYQGI 206
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 8/207 (3%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ L++LT LN++ + + L L L N++ + E S++ L+ L +
Sbjct: 10 ISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQTLEI 69
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV------- 338
G+N I + +L + L + + I EG+ L L L L++S QV
Sbjct: 70 GYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFIIGDDI 129
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
S + L+G+ L+ +++ I D + L+ L LK LN+ I++ G ++ L
Sbjct: 130 NSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHISKLE 189
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLR 425
LT L++ I G YL K L
Sbjct: 190 KLTFLNIANNDIGYQG-IYLSKMKQLH 215
>gi|430744490|ref|YP_007203619.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
18658]
gi|430016210|gb|AGA27924.1| hypothetical protein Sinac_3679 [Singulisphaera acidiphila DSM
18658]
Length = 242
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
F EI + LV N S + D L+ L L NLK + L+ +Q GL+ L
Sbjct: 53 FQEIAEVSLVRDPFAPN--SFQPINNAKADNLLLQLADLTNLKGVLLTGSQATDQGLKCL 110
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
S + NLE+I + ++A ++TD G+ L L+ L L +
Sbjct: 111 SQMENLENI-----------------------VTVEATEVTDVGVFYLEKLSKLRDLHIS 147
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
+ +TD+ A + L + + G LTDAG+ H+KDL L +L+L+ + LTD LE
Sbjct: 148 YSNLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGLEE 206
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLK 492
+ L L + V ++++T AG++ LK
Sbjct: 207 LRLLAKLRIVCVGDTKVTEAGVQRLK 232
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 13/172 (7%)
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSL 397
G LR L G F I++ SL R +S + +N +A+ D L L L
Sbjct: 40 GPKWLRKLLG-------EEYFQEIAEVSLVRDPFAPNSFQPIN-NAK--ADNLLLQLADL 89
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSL-EICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
T L + L G++ TD G L +NL ++ + +TD GV +++ LS L L++S +
Sbjct: 90 TNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYS 149
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
NLTD + I+ L + V +R+T AGL HLK L+ L+ L L +T
Sbjct: 150 -NLTDAAIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLADTGLT 200
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 27/184 (14%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N D+ + L+ LTNLK + ++ S+ TD G L CL
Sbjct: 76 NAKADNLLLQLADLTNLKGVLLTGSQATDQG----------------------LKCL--- 110
Query: 226 LTSLQKLT-LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+ ++ L ++ +E VT + L L L L+++ L+D +K L+ +
Sbjct: 111 -SQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYSNLTDAAIASIAKHPKLEQIL 169
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N +TD L HLK L L+ L+L G+ D GL L L L+ + + DT+V +G++
Sbjct: 170 VRGNRLTDAGLTHLKDLECLQVLDLADTGLTDVGLEELRLLAKLRIVCVGDTKVTEAGVQ 229
Query: 345 HLSG 348
L
Sbjct: 230 RLKA 233
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 265 QLSDDGCEKFSKIGSLK-VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
Q +D G + S++ +L+ ++ + E+TD + +L+ L+ L L++ + D + ++
Sbjct: 101 QATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYSNLTDAAIASIA 160
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
L+ + + ++ +GL HL L L+ ++L+ TG++D L +L L+ L+ + +
Sbjct: 161 KHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLADTGLTDVGLEELRLLAKLRIVCVGD 220
Query: 384 RQITDTGLAALTSLTGLTHL 403
++T+ G+ L + + HL
Sbjct: 221 TKVTEAGVQRLKA--AMPHL 238
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L V L+GS TD GL L NL+++ +++D G+ +L LS L L +
Sbjct: 90 TNLKGVLLTGSQATDQGLKCLSQMENLENIVTVEATEVTDVGVFYLEKLSKLRDLHISYS 149
Query: 117 NAITAQGMKAFAGLINLVKLD--LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N A A A + KL+ L R R+ GL +LK L L+ L++ +TD +
Sbjct: 150 NLTDA----AIASIAKHPKLEQILVRGNRLTDAGLTHLKDLECLQVLDLA-DTGLTDVGL 204
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ L L L+ + + +KVT++G+ LK
Sbjct: 205 EELRLLAKLRIVCVGDTKVTEAGVQRLKA 233
>gi|401426392|ref|XP_003877680.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493926|emb|CBZ29217.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 811
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 144/320 (45%), Gaps = 31/320 (9%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGL-------SNLTSLSF 113
DLS + + + L+ C NL LD +F Q GLE L L +++ SL
Sbjct: 472 DLSLAHTRVTNVTELQHCHNLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVASLEL 531
Query: 114 RRNNAITAQ---------GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIK 163
+A Q AF G+ L T +N G+ K L LN+
Sbjct: 532 ILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSDINNLGMCKELRLLNV- 590
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
W + +T + L +L+ + ++ + VTD G L I ++I S +R
Sbjct: 591 WSSKVTSEGIAGLCDAKSLQEVDLAETAVTDIG-PLLSCTKIQALILYKSS--VRSL--- 644
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ +LQ+L L++ PV++ + SLSA SL LNL+ + DDG + + SLKV+
Sbjct: 645 DGIGALQRLRRLDIAETPVSS--IRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVV 702
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
++ F IT L L ++LE L SC + EGLV L C L L LS T++ G+
Sbjct: 703 SMSFTAITQ--LGQLGQCSHLEELYAQSCPVTSEGLVGLEKACCLAKLNLSYTKI-QGGI 759
Query: 344 RHLSGLTNLESINLSFTGIS 363
+ L+ L +N+ FT +
Sbjct: 760 QRLTNCRKLLKLNVKFTEVP 779
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 164/362 (45%), Gaps = 18/362 (4%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
L +L L KL L++ NC D D ++ L+S+ +S V D+ + +L L
Sbjct: 276 LSDLVFLQKLRRLDMT--NCKGDFDWAGVARCCFLRSVHLSGCNVKDADVPHLAQLPCVE 333
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
+ + + I + L + + L ++ L V + +D L L L L+L+ +S
Sbjct: 334 ELLLSRTRITNVQAL----ATGKGLRIIQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVS 389
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D C + SL LNL +T E + L L LE L L++ I D + + +
Sbjct: 390 DVNC--LGQSQSLIYLNLAKTHVTSEGIADLSRLLTLEHLMLNNNNIRDVSFLAESH--S 445
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
LK L L T V S+ L L L+ ++L+ T +++ + +L +L L+L +
Sbjct: 446 LKTLSLQSTLVDSAALEGFGRLQTLQDLSLAHTRVTN--VTELQHCHNLWRLDLQGSFVD 503
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLS 446
G+A L L L L L ++ + + +L LE+ + + + + S
Sbjct: 504 QAGIAGLERLPKLRVLLL--SKTDVASLELILQSASLEQLEVKFSRVNEKSAFFGVTKAS 561
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
+LT + L+ +C+++D + + L LNV +S++TS G+ L K+L+ + L
Sbjct: 562 ALTYVTLT-HCDVSD--INNLGMCKELRLLNVWSSKVTSEGIAGLCDAKSLQEVDLAETA 618
Query: 507 VT 508
VT
Sbjct: 619 VT 620
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 115/513 (22%), Positives = 221/513 (43%), Gaps = 77/513 (15%)
Query: 59 LLSVDLSGSDVTDSGLIHLKD-------------CSNLQSLDFN---FCIQISDG----- 97
L SV LSG +V D+ + HL +N+Q+L IQ+S+
Sbjct: 308 LRSVHLSGCNVKDADVPHLAQLPCVEELLLSRTRITNVQALATGKGLRIIQLSNAQVDSD 367
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G++ L+ L LT L ++ + +L+ L+L + G+ +L L+ L
Sbjct: 368 GIDGLQTLPYLTRLDL---SSTLVSDVNCLGQSQSLIYLNLAKTHVTSEGIADLSRLLTL 424
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS----GIAYLKGLSISSVIFILC 213
E L + N D+ L+ +LK+L + S + DS G L+ L S+
Sbjct: 425 EHLMLNNNNI---RDVSFLAESHSLKTLSLQ-STLVDSAALEGFGRLQTLQDLSLAHTRV 480
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
+ + L H L L+L+G V A + L L L L L++ ++ E
Sbjct: 481 TNVTELQHCH-------NLWRLDLQGSFVDQAGIAGLERLPKLRVLLLSKTDVA--SLEL 531
Query: 274 FSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCL 331
+ SL+ L + F+ + ++ + + L + L C + D +N G+C L+ L
Sbjct: 532 ILQSASLEQLEVKFSRVNEKSAFFGVTKASALTYVTLTHCDVSD---INNLGMCKELRLL 588
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-----------------GSLRKLAGLS 374
+ ++V S G+ L +L+ ++L+ T ++D S+R L G+
Sbjct: 589 NVWSSKVTSEGIAGLCDAKSLQEVDLAETAVTDIGPLLSCTKIQALILYKSSVRSLDGIG 648
Query: 375 SLKSL-NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
+L+ L LD + + + +L++ L L+L + D G + ++L+ + +
Sbjct: 649 ALQRLRRLDIAETPVSSIRSLSACQSLEILNLSNTAVDDDGFQGIGQAQSLKVVSMSFTA 708
Query: 434 LTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+T G H+++L +Q+C +T + L + L LN+S ++I G++
Sbjct: 709 ITQLGQLGQCSHLEEL-------YAQSCPVTSEGLVGLEKACCLAKLNLSYTKI-QGGIQ 760
Query: 490 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
L + L L ++ +V +++ ++ R LP+
Sbjct: 761 RLTNCRKLLKLNVKFTEVPYDEVAYVK-RHLPS 792
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 97/447 (21%), Positives = 189/447 (42%), Gaps = 86/447 (19%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITDSDMKPLSGL------- 179
L L +LD+ C G + G+ + L S+++ CN + D+D+ L+ L
Sbjct: 282 LQKLRRLDMTNCK----GDFDWAGVARCCFLRSVHLSGCN-VKDADVPHLAQLPCVEELL 336
Query: 180 ------TNLKSL---------QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
TN+++L Q+S ++V GI L+ L + + + +++ + CL
Sbjct: 337 LSRTRITNVQALATGKGLRIIQLSNAQVDSDGIDGLQTLPYLTRLDLSSTLVSDVNCL-- 394
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD---------------- 268
Q L LNL VT+ + LS L +L +L LN + D
Sbjct: 395 --GQSQSLIYLNLAKTHVTSEGIADLSRLLTLEHLMLNNNNIRDVSFLAESHSLKTLSLQ 452
Query: 269 ------DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
E F ++ +L+ L+L +T+ + L+ NL L+L + G+ L
Sbjct: 453 STLVDSAALEGFGRLQTLQDLSLAHTRVTN--VTELQHCHNLWRLDLQGSFVDQAGIAGL 510
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKLAGLSSLKS 378
L L+ L LS T V S L S +LE + + F+ +++ S + K + L+ +
Sbjct: 511 ERLPKLRVLLLSKTDVASLELILQSA--SLEQLEVKFSRVNEKSAFFGVTKASALTYVTL 568
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
+ D I + G+ L L+++ +++T G A L + K+L+ +++ +TD G
Sbjct: 569 THCDVSDINNLGMCKELRL-----LNVWSSKVTSEGIAGLCDAKSLQEVDLAETAVTDIG 623
Query: 439 V--------------KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL---NVSNS 481
++ L + L + ++ + + I L+ SL N+SN+
Sbjct: 624 PLLSCTKIQALILYKSSVRSLDGIGALQRLRRLDIAETPVSSIRSLSACQSLEILNLSNT 683
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVT 508
+ G + + ++L+ +++ +T
Sbjct: 684 AVDDDGFQGIGQAQSLKVVSMSFTAIT 710
>gi|220932817|ref|YP_002509725.1| hypothetical protein Hore_19830 [Halothermothrix orenii H 168]
gi|219994127|gb|ACL70730.1| leucine-rich repeat protein [Halothermothrix orenii H 168]
Length = 531
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 144/506 (28%), Positives = 231/506 (45%), Gaps = 82/506 (16%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
LTE S+ +FR + + G +N K + + G + +S D+T L HL D
Sbjct: 66 LTEFSIPSFRHYEINSIK-GLEAFLNIKTLRI----GPNYIS------DLT--PLAHLTD 112
Query: 80 CSNLQSLDFNFCIQISD----GGLEHLRGLSNLTSLSFRR---NNAITAQGMKAFAGLIN 132
L + F I D G L+ LR L +++ + + ++ + L
Sbjct: 113 LERL----YIFENHIEDLSPLGKLKELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAG 168
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCS 190
LVKL+ + + H + NL+ L +L N+K N +S D+KPL+ LT L L + +
Sbjct: 169 LVKLEYLKLS--HQKISNLETLTQLP--NLKTLNVAYNSISDLKPLTALTGLSHLDLEAN 224
Query: 191 KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL 250
+ D I+ L+GL + L + LT ++ L+ +LEG V + L
Sbjct: 225 NIKD--ISPLRGLK----------KLTYLNLIRNELTGVKHLS--SLEGLQVLLLSGNDL 270
Query: 251 SALGSLFYL-NLNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITD-----ECLVHLKGL 301
+ SL L NL + +SD+ + LK LN+ N I D EC
Sbjct: 271 RNIASLTRLVNLEKLDISDNNISVAPGLKEFKGLKELNISGNPIDDINFISEC------- 323
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
LE L +C I D + L G +LK L L + ++ + + L GL LE ++LS
Sbjct: 324 RKLERLLAFNCEIRD--ISPLRGHNSLKELFLHNNRI--TDISPLEGLNTLERLDLSGNS 379
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
I + S+ ++GL+ LK L+L+ +T + L L L +L+L RI S L+
Sbjct: 380 IENVSV--ISGLNKLKYLDLEGCGLT--AIEFLKDLGSLEYLELENNRI--SQIEPLKKH 433
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSL-TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
NL++L + IKD+S+L L+NL + +L D +E I LTGL L V
Sbjct: 434 INLKTLVLDNN--------QIKDISTLGELMNL-KVLSLNDNQIENIDSLTGLNQLEV-- 482
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCK 506
I+ +R++KPL L +L++ + K
Sbjct: 483 LYISGNRIRNIKPLLKLNNLSVVAIK 508
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 132/276 (47%), Gaps = 44/276 (15%)
Query: 241 PVTAACLDSLS--ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
PV +++L+ ++ S + +N + G E F I +L++ G N I+D L L
Sbjct: 57 PVFRPEVENLTEFSIPSFRHYEINSIK----GLEAFLNIKTLRI---GPNYISD--LTPL 107
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-------------H 345
LT+LE L + I D L L L L+ L + GL
Sbjct: 108 AHLTDLERLYIFENHIED--LSPLGKLKELRELIIRGLPPYKKGLPSGKYSGHYIEDISP 165
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L+GL LE + LS IS+ L L L +LK+LN+ I+D L LT+LTGL+HLDL
Sbjct: 166 LAGLVKLEYLKLSHQKISN--LETLTQLPNLKTLNVAYNSISD--LKPLTALTGLSHLDL 221
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
I D + LR K L L + LT GVKH+ L L +L LS N L
Sbjct: 222 EANNIKD--ISPLRGLKKLTYLNLIRNELT--GVKHLSSLEGLQVLLLSGN------DLR 271
Query: 466 LISGLTGLVS---LNVSNSRITSA-GLRHLKPLKNL 497
I+ LT LV+ L++S++ I+ A GL+ K LK L
Sbjct: 272 NIASLTRLVNLEKLDISDNNISVAPGLKEFKGLKEL 307
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 178/415 (42%), Gaps = 96/415 (23%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
H + ++KGL LNIK + SD+ PL+ LT+L+ L I + + D S + LK
Sbjct: 76 HYEINSIKGLEAF--LNIKTLRIGPNYISDLTPLAHLTDLERLYIFENHIEDLSPLGKLK 133
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP---VTAACLDSLSALGSLF- 257
L +IIR L +K G P + ++ +S L L
Sbjct: 134 ELR---------ELIIR------GLPPYKK-------GLPSGKYSGHYIEDISPLAGLVK 171
Query: 258 --YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
YL L+ ++S+ E +++ +LK LN+ +N I+D L L LT L L+L++ I
Sbjct: 172 LEYLKLSHQKISN--LETLTQLPNLKTLNVAYNSISD--LKPLTALTGLSHLDLEANNIK 227
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-----------------INLS 358
D + L GL L L L ++ +G++HLS L L+ +NL
Sbjct: 228 D--ISPLRGLKKLTYLNLIRNEL--TGVKHLSSLEGLQVLLLSGNDLRNIASLTRLVNLE 283
Query: 359 FTGISDGSLRKLAGLSS---LKSLNLDARQITDTG--------------------LAALT 395
ISD ++ GL LK LN+ I D ++ L
Sbjct: 284 KLDISDNNISVAPGLKEFKGLKELNISGNPIDDINFISECRKLERLLAFNCEIRDISPLR 343
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L L L RITD + L L L++ G + + V I L+ L L+L +
Sbjct: 344 GHNSLKELFLHNNRITD--ISPLEGLNTLERLDLSGNSIENVSV--ISGLNKLKYLDL-E 398
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK---NLRSLTLESCKV 507
C LT +E + L L L + N+RI+ ++PLK NL++L L++ ++
Sbjct: 399 GCGLT--AIEFLKDLGSLEYLELENNRIS-----QIEPLKKHINLKTLVLDNNQI 446
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 139/304 (45%), Gaps = 59/304 (19%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGL-------------------INLVKLDL-ERC 141
LRGL LT L+ RN + + + GL +NL KLD+ +
Sbjct: 232 LRGLKKLTYLNLIRNELTGVKHLSSLEGLQVLLLSGNDLRNIASLTRLVNLEKLDISDNN 291
Query: 142 TRIHGGLVNLKGLMKL-------ESLN-IKWC---------NCITDSDMKPLSGLTNLKS 184
+ GL KGL +L + +N I C NC D+ PL G +LK
Sbjct: 292 ISVAPGLKEFKGLKELNISGNPIDDINFISECRKLERLLAFNC-EIRDISPLRGHNSLKE 350
Query: 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
L + +++TD I+ L+GL+ + + + I + ++ L KL L+LEGC +TA
Sbjct: 351 LFLHNNRITD--ISPLEGLNTLERLDLSGNSIENVSV----ISGLNKLKYLDLEGCGLTA 404
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
++ L LGSL YL L ++S E K +LK L L N+I D + L L NL
Sbjct: 405 --IEFLKDLGSLEYLELENNRISQ--IEPLKKHINLKTLVLDNNQIKD--ISTLGELMNL 458
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
+ L+L+ I E + +LTGL L+ L +S ++ R++ L L NLS I +
Sbjct: 459 KVLSLNDNQI--ENIDSLTGLNQLEVLYISGNRI-----RNIKPLLKLN--NLSVVAIKN 509
Query: 365 GSLR 368
+
Sbjct: 510 NQFK 513
>gi|149242645|pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 169 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 195
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 196 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 252
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 253 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 307
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 308 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 365
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 366 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 424
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 126/270 (46%), Gaps = 56/270 (20%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ LN Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTD 164
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 165 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 222
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 485
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 223 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 277
Query: 486 -AGLRHL-------------KPLKNLRSLT 501
AGL L P+ NL++LT
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLT 307
>gi|167861908|gb|ACA05653.1| InlA [Listeria monocytogenes]
Length = 800
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QITD L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQITD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|56797879|emb|CAH04901.1| internalin A [Listeria monocytogenes]
Length = 483
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 196 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 222
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 223 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 279
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 280 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 334
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 335 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 392
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 393 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 451
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 84 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 136
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 137 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 191
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 192 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 249
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 250 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 300
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 301 -NISPLAGLTALT 312
>gi|290991352|ref|XP_002678299.1| predicted protein [Naegleria gruberi]
gi|284091911|gb|EFC45555.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 147/311 (47%), Gaps = 16/311 (5%)
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLN 236
L NLKSL + ++ + Y+ L + I S I R H+ + + +LT LN
Sbjct: 63 LPNLKSLDVGLVQEICYENVEYISELQNLTTFSIRYSNIGRK---HLQIIGEMSQLTDLN 119
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE-C 294
+ G P+ + L + L + L+ C L DDG L+ LNL N IT E C
Sbjct: 120 ISGNPINS--LLPIRPLTRITSLSAADCSFLGDDGIYPIVNFKGLQKLNLSSNGITWEGC 177
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSG-LTNL 352
+ + NL L+L+ I D + L+ + L L++ ++ ++ G++ +S LTNL
Sbjct: 178 MFISEKFPNLSHLSLNETRICDGAIKRLSKMKQLTYLDVGNNAKITMEGIKLISNNLTNL 237
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARI 410
+N+S ++D L L L+ L + QITD+G+ + G L L L I
Sbjct: 238 THLNISSNNVTDEGLMMACDLPKLQELFVGHNQITDSGINEFSEKIGNKLKILSLSRNNI 297
Query: 411 TDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS 468
T YL NL+ L + G +TD VK I + + L L++S N N+TDK+LE +
Sbjct: 298 TSLCTQYLCTKLTNLKKLYLAGVSITDEDVKLICQCMKLLIYLDVSWN-NVTDKSLEYVI 356
Query: 469 GLTGLVSLNVS 479
L ++V+
Sbjct: 357 ASESLREVDVN 367
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 154/360 (42%), Gaps = 66/360 (18%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NL+SLD +I +E++ L NLT+ S R +N I + ++ + L L+
Sbjct: 65 NLKSLDVGLVQEICYENVEYISELQNLTTFSIRYSN-IGRKHLQIIGEMSQLTDLN---- 119
Query: 142 TRIHGGLVN----LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
I G +N ++ L ++ SL+ C+ + D + P+ L+ L +S + +T
Sbjct: 120 --ISGNPINSLLPIRPLTRITSLSAADCSFLGDDGIYPIVNFKGLQKLNLSSNGIT---- 173
Query: 198 AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
EGC + +LS
Sbjct: 174 ---------------------------------------WEGCMFISEKFPNLS------ 188
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHL-KGLTNLESLNLDSCGIG 315
+L+LN ++ D ++ SK+ L L++G N +IT E + + LTNL LN+ S +
Sbjct: 189 HLSLNETRICDGAIKRLSKMKQLTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVT 248
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKL-AG 372
DEGL+ L L+ L + Q+ SG+ S L+ ++LS I+ + L
Sbjct: 249 DEGLMMACDLPKLQELFVGHNQITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTK 308
Query: 373 LSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431
L++LK L L ITD + + + L +LD+ +TD Y+ ++LR +++ G
Sbjct: 309 LTNLKKLYLAGVSITDEDVKLICQCMKLLIYLDVSWNNVTDKSLEYVIASESLREVDVNG 368
>gi|300868028|ref|ZP_07112666.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
gi|300333948|emb|CBN57844.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
Length = 376
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 171/358 (47%), Gaps = 57/358 (15%)
Query: 135 KLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
KLDL T + + L L +L+ L+ CN +T + ++ L+ L+ L +S +K+
Sbjct: 24 KLDLGYMELTEVPEAIATLTQLQRLD-LD---CNQLTKVP-EAIASLSQLQILNLSNNKL 78
Query: 193 TD--SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN--LEGCPVTAACLD 248
T+ IA L L ++I+ + + LT LQKL L N L P +
Sbjct: 79 TEVPEAIASLSQLQTLNLIYNKLTEVPEAIA---TLTQLQKLYLSNNQLTQVP------E 129
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
++++L L LNLN QL++ E + + L+ LNL +N++T E + LT LE L
Sbjct: 130 AIASLSQLQTLNLNFNQLTE-VPEAIASLSQLRRLNLSYNQLT-EVPETIASLTQLEWLY 187
Query: 309 LDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
L++ + E + +LT L+ L LSD + T + +
Sbjct: 188 LNNNQLRKVPEAIASLT---QLQRLSLSDNE---------------------LTAVPEA- 222
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+A LS L+SLNL Q+T+ A+ SLT L L L G ++T+ A + + L+
Sbjct: 223 ---IASLSQLRSLNLSNNQLTELP-EAIASLTQLQELYLVGNQLTELPEA-IASLTQLQE 277
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G LT A + I L+ L L+LS N LT E I+ LT L L++S +++T
Sbjct: 278 LYLVGNELT-AVPEAIASLTQLQRLSLSDN-ELT-AVPEAIASLTHLQGLDLSYNQLT 332
>gi|149242641|pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
gi|149242643|pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 169 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 195
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 196 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 252
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 253 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 307
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 308 YLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 365
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 366 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 424
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 126/270 (46%), Gaps = 56/270 (20%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ LN Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTD 164
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 165 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 222
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 485
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 223 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 277
Query: 486 -AGLRHL-------------KPLKNLRSLT 501
AGL L P+ NL++LT
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLT 307
>gi|398024920|ref|XP_003865621.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503858|emb|CBZ38944.1| hypothetical protein, conserved [Leishmania donovani]
Length = 1208
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 144/289 (49%), Gaps = 17/289 (5%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L SL++L L++ P+ L +L+ SL + L+RC+ E ++ L+ L+L
Sbjct: 427 LGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCR-GVRSLEPLRRLEHLQSLSL 485
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGL 343
+TD L+ L G T L L LD C I D L NL G L+ L + T + ++ +
Sbjct: 486 HGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLLSNANM 543
Query: 344 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
H+ L ++L S ++D + L L++L+ LNL +TD G +AL + L
Sbjct: 544 HHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQR 601
Query: 403 LDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L+L R IT AA+ R L SL++ ++DAGV +++ + L LNL C
Sbjct: 602 LNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL---CG 658
Query: 459 LTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 505
++ + L + ++ L LN+ +R+T R+L +NLR L+L C
Sbjct: 659 CSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
G+ +L L L+CL + T + + L+ L+ ++LE I L G+ SL L L L
Sbjct: 423 GVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCRGVR--SLEPLRRLEHL 480
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 434
+SL+L +TDT L +LT T L L L R ITD ++L N + L L + L
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 538
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
++A + HI L L+L LTD + ++ LT L LN+S++ +T G L +
Sbjct: 539 SNANMHHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 495 KNLRSLTLESCK 506
+L+ L L SC+
Sbjct: 597 PSLQRLNLASCR 608
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 152/353 (43%), Gaps = 70/353 (19%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQK 231
++PL L +L+SL + VTD+ + L G + + ++ C I L L +L++
Sbjct: 471 LEPLRRLEHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLER 530
Query: 232 LTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 287
L + P T ++ +G L L+L QL+D G K + +L+VLNL
Sbjct: 531 LLM------PRTLLSNANMHHIGLCDKLVELHLQSLRQLTDIGVLK--DLTALRVLNLSD 582
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N +TDE L + +L+ LNL SC +C+ +SG
Sbjct: 583 NLVTDEGCSALHCMPSLQRLNLASC----------------RCITSLAAAFTASG----R 622
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGLTHL 403
+ L S+++S T ISD + + + L+ LNL + R+ L+ L ++ L L
Sbjct: 623 CMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNLCGCSELRR-----LSWLQKMSSLRWL 677
Query: 404 DLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
+L G R+TD YL +NLR L + G C+ + +
Sbjct: 678 NLGGTRVTDEETKRYLPCTRNLRFLSLSG-------------------------CS-SVR 711
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+L L L LN+ ++ + + L L + LR L+LESC V D+ L
Sbjct: 712 SLFFAVKLPQLEYLNLESTSVADSELACLCHCRKLRYLSLESC-VDIRDVSPL 763
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 146/349 (41%), Gaps = 44/349 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 480 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 536
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ M LV+L L+ ++ V LK L L LN+ N +TD L
Sbjct: 537 LLSNANMHHIGLCDKLVELHLQSLRQLTDIGV-LKDLTALRVLNLSD-NLVTDEGCSALH 594
Query: 178 GLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ +L+ L + SC +T S+++ + RL L V T++ +L
Sbjct: 595 CMPSLQRLNLASCRCIT----------SLAAAFTASGRCMHRLLSLDVSHTNISDAGVLC 644
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRC----QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
++ C L YLNL C +LS K+ SL+ LNLG +TD
Sbjct: 645 VQEC-------------TDLRYLNLCGCSELRRLS-----WLQKMSSLRWLNLGGTRVTD 686
Query: 293 -ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
E +L NL L+L C L L L+ L L T V S L L
Sbjct: 687 EETKRYLPCTRNLRFLSLSGCS-SVRSLFFAVKLPQLEYLNLESTSVADSELACLCHCRK 745
Query: 352 LESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
L ++L S I D S L L +L LN+ + + AL++ +G
Sbjct: 746 LRYLSLESCVDIRDVS--PLCALPALLELNISLTAVGASTGGALSTTSG 792
>gi|87309591|ref|ZP_01091725.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
gi|87287355|gb|EAQ79255.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
Length = 328
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 6/241 (2%)
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
++ G++ L +TD HL L +L+ LNL+ G+ D+ L + L L+ L
Sbjct: 63 EYDDQGAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLY 122
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L T V S+G+ L+ LE + L+ I D +L + L +L L+L ITD G+
Sbjct: 123 LERTAVTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMF 182
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L SL L L L +T G A L++ +LR +++ + + ++ ++ +L L
Sbjct: 183 HLQSLPHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLY 242
Query: 453 LSQNCNLTDKTL-ELISGL----TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L + +LTD+ L E I L L L + IT L LK L L L + +
Sbjct: 243 LGR-TSLTDELLPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRE 301
Query: 508 T 508
T
Sbjct: 302 T 302
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 5/189 (2%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+L +L L LE VT+A + +L++ L L L C + DD E ++ +L +L+L
Sbjct: 114 ALPELRSLYLERTAVTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSE 173
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
ITD + HL+ L +L++L L + EG L +L+ ++LSD + S + L
Sbjct: 174 TPITDAGMFHLQSLPHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLR 233
Query: 348 GLTNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQITDTGLAALTSLTGLTH 402
NLE + L T ++D L + L+ L + ITD L L L L
Sbjct: 234 SFPNLERLYLGRTSLTDELLPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPD 293
Query: 403 LDLFGARIT 411
L + R T
Sbjct: 294 LAVVDFRET 302
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 105/239 (43%), Gaps = 12/239 (5%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 313
G++ L N +++D+ + SL+ LNL + +TD+ L + L L SL L+
Sbjct: 68 GAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTA 127
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+ G+ L L+ L L++ + L + L L ++LS T I+D + L L
Sbjct: 128 VTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSL 187
Query: 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
LK+L L +T G A L S T L +DL I S LR+F NL L +
Sbjct: 188 PHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTS 247
Query: 434 LTDAGVKHIKDLSSLTLLNLSQN--------CNLTDKTLELISGLTGLVSLNVSNSRIT 484
LTD + D TL+ + + +TD +L + L L L V + R T
Sbjct: 248 LTDELLPEFID----TLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 5/201 (2%)
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
L SL LNLN+ ++D E + L+ L L +T + L LE L L C
Sbjct: 91 LQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASCEKLEELMLTEC 150
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
I D+ L + L L L LS+T + +G+ HL L +L+++ L T ++ L
Sbjct: 151 AIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTAVTGEGFAMLKS 210
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-----LRNFKNLRSL 427
+ L+ ++L I + + L S L L L +TD +R +LR L
Sbjct: 211 STDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEFIDTLIRFNPHLRGL 270
Query: 428 EICGGGLTDAGVKHIKDLSSL 448
I +TD + +K L+ L
Sbjct: 271 AIMEVPITDNSLTPLKRLAEL 291
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
L ++ ++TD + L L L L+L + +TD + LRSL + +T AG
Sbjct: 73 LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
V + L L L++ C + D LE I L L L++S + IT AG+ HL+ L +L+
Sbjct: 133 VAALASCEKLEELMLTE-CAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLK 191
Query: 499 SLTLESCKVTANDIKRLQS 517
+L L VT L+S
Sbjct: 192 TLYLRDTAVTGEGFAMLKS 210
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 25/244 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D HL L +L L+ ++ +T + ++ L L L LER G+ L
Sbjct: 79 RMTDNAASHLVMLQSLQRLNLNQS-GVTDKSLEIMGALPELRSLYLERTAVTSAGVAALA 137
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
KLE L + C I D ++ + L L L +S + +TD+G+ +L+ L +++
Sbjct: 138 SCEKLEELMLTEC-AIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLR 196
Query: 213 CSMII-RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
+ + F + L S L L++L + + +++L + +L L L R L+D+
Sbjct: 197 DTAVTGEGFAM---LKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELL 253
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+F I +L + FN HL+GL +E I D L L L L L
Sbjct: 254 PEF--IDTL----IRFNP-------HLRGLAIME------VPITDNSLTPLKRLAELPDL 294
Query: 332 ELSD 335
+ D
Sbjct: 295 AVVD 298
>gi|207743099|ref|YP_002259491.1| lrr-gala family type III effector protein (gala 5) [Ralstonia
solanacearum IPO1609]
gi|206594496|emb|CAQ61423.1| lrr-gala family type III effector protein (gala 5) [Ralstonia
solanacearum IPO1609]
Length = 526
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 2/242 (0%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L A L LN+NR ++ G + +L L++G N I D + L L +LN+
Sbjct: 250 LGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEALLANAQLTTLNV 309
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ +G G+ L L L + D +G G + L+ T+L +++ GI +
Sbjct: 310 ERAAVGAHGVRALADSKTLTSLRI-DNNIGDEGAKTLAASTSLTTLHSESNGIGLAGAKA 368
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
LA + L +LNL I D G A + T L L + ++D+GA L K L +L+
Sbjct: 369 LAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRLAASKTLTTLDA 428
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+ DAG + + +LT L++S N + + ++ T L SL++ N+R+ AG+R
Sbjct: 429 GDNAIKDAGARALAANRTLTTLDVSSN-EIGNAGARALAANTRLASLDLRNNRMLEAGVR 487
Query: 490 HL 491
L
Sbjct: 488 AL 489
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 1/228 (0%)
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+ LT L++ G + A +++L A L LN+ R + G + +L L + N
Sbjct: 278 KTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLTSLRI-DNN 336
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
I DE L T+L +L+ +S GIG G L L L L +G +G +
Sbjct: 337 IGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLAN 396
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
T L S+++ G+SD +LA +L +L+ I D G AL + LT LD+
Sbjct: 397 TTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSNE 456
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 457 IGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 504
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 114/284 (40%), Gaps = 70/284 (24%)
Query: 228 SLQKLTLL------NLEGCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIGS 279
+L+KLTL +L G P T L L+L+RC+ ++ G S++
Sbjct: 113 ALEKLTLAGAFTDADLAGLPPT------------LKELDLSRCRGCITAAGIAHLSRL-P 159
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L LNL N I L L L++ CGIG E L L L S VG
Sbjct: 160 LVRLNLSGNRIGPVEARLLANHPTLTELDVSHCGIGPEEARALAASARLTTLNASRNGVG 219
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G+R L L S++LS G+ D ++L L +LN++ +I
Sbjct: 220 GEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNRNRI------------- 266
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
D+ GAR L + K L SL+I G + DAGV+ LL +Q
Sbjct: 267 ----DVQGAR-------ALADCKTLTSLDIGGNSIGDAGVE--------ALLANAQ---- 303
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
L +LNV + + + G+R L K L SL ++
Sbjct: 304 -------------LTTLNVERAAVGAHGVRALADSKTLTSLRID 334
>gi|146104641|ref|XP_001469881.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134074251|emb|CAM72995.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 1208
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 17/289 (5%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L SL++L L++ P+ L +L+ SL + L+RC+ E ++ L+ L+L
Sbjct: 427 LGSLKQLRCLHILHTPLHETFLQALTTCSSLECILLHRCR-GVRSLEPLRRLEHLQSLSL 485
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGL 343
+TD L+ L G T L L LD C I D L NL G L+ L + T + ++ +
Sbjct: 486 HGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLLSNANM 543
Query: 344 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+H+ L ++L S ++D + L L++L+ LNL +TD G +AL + L
Sbjct: 544 QHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQR 601
Query: 403 LDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L+L R IT AA+ R L SL++ ++DAGV +++ + L LNL C
Sbjct: 602 LNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL---CG 658
Query: 459 LTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 505
++ + L + ++ L LN+ +R+T R+L +NLR L+L C
Sbjct: 659 CSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
G+ +L L L+CL + T + + L+ L+ ++LE I L G+ SL L L L
Sbjct: 423 GVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECILLHRCRGVR--SLEPLRRLEHL 480
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 434
+SL+L +TDT L +LT T L L L R ITD ++L N + L L + L
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 538
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
++A ++HI L L+L LTD + ++ LT L LN+S++ +T G L +
Sbjct: 539 SNANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 495 KNLRSLTLESCK 506
+L+ L L SC+
Sbjct: 597 PSLQRLNLASCR 608
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 148/343 (43%), Gaps = 69/343 (20%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHVFLTSLQK 231
++PL L +L+SL + VTD+ + L G + + ++ C I L L +L++
Sbjct: 471 LEPLRRLEHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLER 530
Query: 232 LTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGF 287
L + P T ++ +G L L+L QL+D G K + +L+VLNL
Sbjct: 531 LLM------PRTLLSNANMQHIGLCDKLVELHLQSLRQLTDIGVLK--DLTALRVLNLSD 582
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N +TDE L + +L+ LNL SC +C+ +SG
Sbjct: 583 NLVTDEGCSALHCMPSLQRLNLASC----------------RCITSLAAAFTASG----R 622
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGLTHL 403
+ L S+++S T ISD + + + L+ LNL + R+ L+ L ++ L L
Sbjct: 623 CMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNLCGCSELRR-----LSWLQKMSSLRWL 677
Query: 404 DLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
+L G R+TD YL +NLR L + G C+ + +
Sbjct: 678 NLGGTRVTDEETKRYLPCTRNLRFLSLSG-------------------------CS-SVR 711
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
+L L L LN+ ++ + + L L + LR L+LESC
Sbjct: 712 SLFFAVKLPQLEYLNLESTSVADSELACLCHCRKLRYLSLESC 754
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 147/349 (42%), Gaps = 44/349 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 480 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 536
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ M+ LV+L L+ ++ V LK L L LN+ N +TD L
Sbjct: 537 LLSNANMQHIGLCDKLVELHLQSLRQLTDIGV-LKDLTALRVLNLSD-NLVTDEGCSALH 594
Query: 178 GLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ +L+ L + SC +T S+++ + RL L V T++ +L
Sbjct: 595 CMPSLQRLNLASCRCIT----------SLAAAFTASGRCMHRLLSLDVSHTNISDAGVLC 644
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRC----QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
++ C L YLNL C +LS K+ SL+ LNLG +TD
Sbjct: 645 VQEC-------------TDLRYLNLCGCSELRRLS-----WLQKMSSLRWLNLGGTRVTD 686
Query: 293 -ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
E +L NL L+L C L L L+ L L T V S L L
Sbjct: 687 EETKRYLPCTRNLRFLSLSGCS-SVRSLFFAVKLPQLEYLNLESTSVADSELACLCHCRK 745
Query: 352 LESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
L ++L S I D S L L +L LN+ + + AL++ +G
Sbjct: 746 LRYLSLESCADIRDVS--PLCALPALLELNISLTAVGASTGGALSTTSG 792
>gi|47219755|emb|CAG03382.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 152/279 (54%), Gaps = 35/279 (12%)
Query: 255 SLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLD 310
SL LNL+ C Q++D + ++ + +L+VL LG + IT+ L+ + GL L+SLNL
Sbjct: 121 SLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLR 180
Query: 311 SC-GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF 359
SC + D G+ +L+G+ +L+ L L D Q + L+H+S GL L+ +NLSF
Sbjct: 181 SCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSF 240
Query: 360 TG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSG 414
G ISDG + L+ ++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D
Sbjct: 241 CGGISDGGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQS 299
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGL 473
A++ GL D + ++ + L LN+ Q +TDK LELI+ LT L
Sbjct: 300 LAHIAQ------------GLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQL 347
Query: 474 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
+++ ++IT GL + L L+ L L ++T ++
Sbjct: 348 TGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTESE 386
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 150/304 (49%), Gaps = 40/304 (13%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L+ L +S C ++TDS + YLK L
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 148
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALG-------- 254
+ + CS I L V L +L LNL C V+ + LS +
Sbjct: 149 EVLELGG--CSNITNTGLLLVAW-GLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCL 205
Query: 255 SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDS 311
SL L L CQ L+D + SK + LKVLNL F I+D ++HL +T+L SLNL S
Sbjct: 206 SLEKLTLQDCQKLTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCSLNLRS 265
Query: 312 C-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
C I D G+++L G L L++S ++G L H++ G+ DG R
Sbjct: 266 CDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAHIA------------QGLDDGINR 313
Query: 369 KLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLR 425
+ + LK+LN+ +ITD GL + LT LT +DL+G +IT G + L+
Sbjct: 314 MVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLK 373
Query: 426 SLEI 429
L +
Sbjct: 374 VLNL 377
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 135/284 (47%), Gaps = 63/284 (22%)
Query: 68 DVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGL----EHLR------------------ 103
++TD+GL H ++D +L+ L+ + C QI+D L ++L+
Sbjct: 105 NLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGL 164
Query: 104 -----GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGLVN 150
GL L SL+ R ++ G+ +G+ ++L KL L+ C + L +
Sbjct: 165 LLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQDCQK----LTD 220
Query: 151 L------KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-- 201
L KGL KL+ LN+ +C I+D M LS +T+L SL + SC ++D+GI +L
Sbjct: 221 LSLKHVSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCSLNLRSCDNISDTGIMHLAMG 280
Query: 202 GLSISSVIFILCSMIIRLFCLHV----------FLTSLQKLTLLNLEGC-PVTAACLDSL 250
L +S + C I H+ + + +L LN+ C +T L+ +
Sbjct: 281 SLRLSGLDVSFCDKIGDQSLAHIAQGLDDGINRMVRQMHELKTLNIGQCGRITDKGLELI 340
Query: 251 S-ALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+ L L ++L C +++ G E+ +++ LKVLNLG ++T+
Sbjct: 341 ADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE 384
>gi|290997085|ref|XP_002681112.1| predicted protein [Naegleria gruberi]
gi|284094735|gb|EFC48368.1| predicted protein [Naegleria gruberi]
Length = 142
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 72/129 (55%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L L + + ++G G +++S + L S+++ + I D ++ ++ + L SLN+ +I
Sbjct: 4 LSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNNEIG 63
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
D G+ ++ + LT L++ RI+ G Y+ K L SL+I + D GVK+I ++
Sbjct: 64 DEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQ 123
Query: 448 LTLLNLSQN 456
L+ LN+S N
Sbjct: 124 LSSLNISYN 132
Score = 65.9 bits (159), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 76/134 (56%)
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
+ L LN+ ++ +G + S++ L +++ +NEI DE + ++ + L SLN+ +
Sbjct: 1 MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
IGDEG+ ++ + L L + D ++ G++++S + L S+++S+ I D ++ ++
Sbjct: 61 EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120
Query: 373 LSSLKSLNLDARQI 386
+ L SLN+ +I
Sbjct: 121 MKQLSSLNISYNEI 134
Score = 62.0 bits (149), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 68/129 (52%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ + IG EG ++ + L +++ ++G G++++S + L S+N+
Sbjct: 1 MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I D ++ ++ + L SLN+ +I+ G+ ++ + LT LD+ I D G Y+
Sbjct: 61 EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120
Query: 421 FKNLRSLEI 429
K L SL I
Sbjct: 121 MKQLSSLNI 129
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ L S+N+ I + ++ + L S+++ +I D G+ ++ + L+ L+++
Sbjct: 1 MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
I D G Y+ K L SL I ++ GVK+I ++ LT L++S N + D+ ++ IS
Sbjct: 61 EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYN-EIGDEGVKYIS 119
Query: 469 GLTGLVSLNVSNSRI 483
+ L SLN+S + I
Sbjct: 120 EMKQLSSLNISYNEI 134
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 73/134 (54%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++L+ LN+ + +S + L +++ ++ D+G + S++ L LN+ N
Sbjct: 1 MKQLSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
EI DE + ++ + L SLN+ I EG+ ++ + L L++S ++G G++++S
Sbjct: 61 EIGDEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISE 120
Query: 349 LTNLESINLSFTGI 362
+ L S+N+S+ I
Sbjct: 121 MKQLSSLNISYNEI 134
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 69/126 (54%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L LN+ NEI E ++ + L S+++ IGDEG+ ++ + L L + + ++G
Sbjct: 4 LSSLNVYNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYNNEIG 63
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G++++S + L S+N+ IS ++ ++ + L SL++ +I D G+ ++ +
Sbjct: 64 DEGVKYISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQ 123
Query: 400 LTHLDL 405
L+ L++
Sbjct: 124 LSSLNI 129
Score = 43.5 bits (101), Expect = 0.25, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L SVD+ +++ D G+ ++ + L SL+ + +I D G++++ + LTSL+
Sbjct: 23 SEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNV-YNNEIGDEGVKYISEMKQLTSLNI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+N I+ +G+K + + L LD+ G+ + + +L SLNI +
Sbjct: 82 -PDNRISVEGVKYISEMKQLTSLDISYNEIGDEGVKYISEMKQLSSLNISY 131
Score = 41.6 bits (96), Expect = 0.91, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLN+ + N I K +S + L S+ I +++ D G+ Y+ + S + +
Sbjct: 1 MKQLSSLNV-YNNEIGCEGAKYISEMQQLTSVDIYYNEIGDEGVKYISEMKQLSSLNVYN 59
Query: 214 SMI----IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 269
+ I ++ +++ +++LT LN+ ++ + +S + L L+++ ++ D+
Sbjct: 60 NEIGDEGVK------YISEMKQLTSLNIPDNRISVEGVKYISEMKQLTSLDISYNEIGDE 113
Query: 270 GCEKFSKIGSLKVLNLGFNEI 290
G + S++ L LN+ +NEI
Sbjct: 114 GVKYISEMKQLSSLNISYNEI 134
>gi|71912406|gb|AAZ53235.1| InlA [Listeria monocytogenes]
Length = 800
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTSLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLASLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|75907715|ref|YP_322011.1| small GTP-binding protein domain-containing protein [Anabaena
variabilis ATCC 29413]
gi|75701440|gb|ABA21116.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
29413]
Length = 1107
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 16/292 (5%)
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
L L + L L L L++ G P+ D ++ + L L L R ++++ E + +
Sbjct: 69 LKTLPLELLGLPNLRKLDISGNPL-ERIPDLVTQILHLEELILIRVEITE-IPEAIANLT 126
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDT 336
+L L L N+IT E + LTNL L+L I + E + NLT L +L T
Sbjct: 127 NLTHLILFSNQIT-ETPEAIAKLTNLTQLDLSDNQITEIPEAIANLTNLTHLILFSNQIT 185
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
++ + ++ LTNL ++L I++ + +A L++L L+L QIT+ A+ +
Sbjct: 186 EIPEA----IANLTNLTQLDLGDNQITEIP-KAIANLTNLTQLDLGDNQITEIP-KAIAN 239
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
LT LTHL LF +IT+ A + N NL L++ +T+ K I +L++LT L LS N
Sbjct: 240 LTNLTHLILFSNQITEIPEA-IANLTNLMQLDLSYNQITEIP-KAIANLTNLTQLVLSDN 297
Query: 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ E I+ LT L L++S+++IT + L NL L K+T
Sbjct: 298 K--ITEIPEAIANLTNLTQLDLSDNKITEIP-ETIANLTNLTELYFNYNKIT 346
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 187/428 (43%), Gaps = 61/428 (14%)
Query: 20 LTEVSLEAFRDCALQDLCLGQ----YPGVNDKWMDVIASQGSSLLSVDLSGS------DV 69
LTE+ E + L+ L LG+ Y V D+++ ++ L ++L G D+
Sbjct: 28 LTELPGEIGKLQQLESLILGKQVGGYEWVGDRYLKKVSGNNLKTLPLELLGLPNLRKLDI 87
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAF 127
+ + L + D Q L I I E ++NLT+L+ +N IT + +A
Sbjct: 88 SGNPLERIPDLVT-QILHLEELILIRVEITEIPEAIANLTNLTHLILFSNQIT-ETPEAI 145
Query: 128 AGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L NL +LDL + T I + NL L L I + N IT+ + ++ LTNL L
Sbjct: 146 AKLTNLTQLDLSDNQITEIPEAIANLTNLTHL----ILFSNQITEIP-EAIANLTNLTQL 200
Query: 186 QISCSKVTD--SGIAYLKGLSI----SSVIFILCSMIIRLFCL-HVFLTSLQKLTLLNLE 238
+ +++T+ IA L L+ + I + I L L H+ L S Q +
Sbjct: 201 DLGDNQITEIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNLTHLILFSNQ------IT 254
Query: 239 GCPVTAACLDSLSALGSLFY-------------LNLNRCQLSDDGC----EKFSKIGSLK 281
P A L +L L L Y NL + LSD+ E + + +L
Sbjct: 255 EIPEAIANLTNLMQL-DLSYNQITEIPKAIANLTNLTQLVLSDNKITEIPEAIANLTNLT 313
Query: 282 VLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L+L N+IT+ E + +L LT L N + E + LT L L TQ+
Sbjct: 314 QLDLSDNKITEIPETIANLTNLTEL-YFNYNKITQIAEAIAKLTNLTELHLSSNQITQIP 372
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
+ ++ LTNL + L++ I+ + +A L++L L+LD QIT AL SL
Sbjct: 373 EA----IANLTNLTELYLNYNKITQIA-EAIAKLTNLTELHLDGNQITQIP-EALESLPK 426
Query: 400 LTHLDLFG 407
L LDL G
Sbjct: 427 LEKLDLRG 434
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 314 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
+GD L ++G NLK L L L GL NL ++ IS L ++ L
Sbjct: 56 VGDRYLKKVSG-NNLKTLPLE-----------LLGLPNLRKLD-----ISGNPLERIPDL 98
Query: 374 SS----LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
+ L+ L L +IT+ A+ +LT LTHL LF +IT++ A + NL L++
Sbjct: 99 VTQILHLEELILIRVEITEIP-EAIANLTNLTHLILFSNQITETPEA-IAKLTNLTQLDL 156
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
+T+ + I +L++LT L L N + E I+ LT L L++ +++IT
Sbjct: 157 SDNQITEIP-EAIANLTNLTHLILF--SNQITEIPEAIANLTNLTQLDLGDNQITEIP-- 211
Query: 490 HLKPLKNLRSLT 501
K + NL +LT
Sbjct: 212 --KAIANLTNLT 221
>gi|28210240|ref|NP_781184.1| internalin A-like protein/ S-layer protein [Clostridium tetani E88]
gi|28202676|gb|AAO35121.1| internalin A-like protein/putative S-layer protein [Clostridium
tetani E88]
Length = 706
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 134/517 (25%), Positives = 237/517 (45%), Gaps = 94/517 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FR 114
+ L ++D + + + D L + DC++L ++F++ +E + L NLT L +
Sbjct: 113 TGLQTIDAANNKIHD--LSPISDCTSLSKINFSY------NKIEDISTLKNLTILEKVYL 164
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
++N I + + A L L +LDL + NLK L L +L + D+ +K
Sbjct: 165 KDNEI--KRIDALEDLKELKELDLS-----SNEIKNLKSLTYLNNLK---TLTMADNGLK 214
Query: 175 PLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCL----HVFLTSL 229
+ L +L+ L+ ++ SK S I+ +K + + ++I + + ++ L ++ +L
Sbjct: 215 NIDDLGSLEKLESLTLSKNNISDISAIKVIRNLTKLYIDDNQVEDVYPLVGMDYLERINL 274
Query: 230 QKLTLLNLEGCPVTAACLD-------SLSALGSLFYL-------------NLNR------ 263
K + N+E L ++ +G+L Y+ NL R
Sbjct: 275 DKNKIKNIEELEANKDNLKWVKYRGKEITDIGTLKYIVEQANVVVNFKDKNLEREVRKKI 334
Query: 264 ------CQLSDDGCEK----FSK----------IGSLKVLNLGFNEITDECLVHLKGLTN 303
+L+D K F+K + L+ +NLG N I D + LK L +
Sbjct: 335 EKPLGELRLADVEYIKELNLFAKNIKDISGMEYLRGLRWVNLGKNNIRD--ISPLKDLED 392
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
LE L L + D + L GL NLK L+++ T + S L L LTNLE + L I
Sbjct: 393 LEGLYLYKTKVSD--ITPLQGLENLKKLQITATNL--SELHPLKNLTNLERLELGENKIF 448
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
+ + L GL L+ L+L I D +++L +LT + L L +++D + + N KN
Sbjct: 449 E--VEDLQGLIKLEVLDLSDNYIKD--ISSLKNLTDIKELKLNKNKVSD--ISIVANMKN 502
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
L+ L I +T +K++KD L L + N +T + E + L + ++V N++I
Sbjct: 503 LQRLYINDNNIT--TLKYLKDAKDLVWLT-ANNNKIT--SFEGLENLLDIKEIHVDNNKI 557
Query: 484 TSAGLRHLKPLKNLRSL-TLESCKVTANDIKRLQSRD 519
+ L PLKNL+ L TL + +D+K +++ D
Sbjct: 558 SK-----LDPLKNLKELETLSARTNVISDLKPIENLD 589
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 175/381 (45%), Gaps = 60/381 (15%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G + L D ++ L+ F I D G+E+LRGL ++ +NN +K
Sbjct: 339 GELRLADVEYIKELNL-FAKNIKDISGMEYLRGLR---WVNLGKNNIRDISPLK------ 388
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
DLE +L+GL + SD+ PL GL NLK LQI+ +
Sbjct: 389 -----DLE----------DLEGL---------YLYKTKVSDITPLQGLENLKKLQITATN 424
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
+ S + LK L+ + + + I + L L KL +L+L + + SL
Sbjct: 425 L--SELHPLKNLTNLERLELGENKIFEVEDLQ----GLIKLEVLDLSDNYI--KDISSLK 476
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L + L LN+ ++SD + + +L+ L + N IT L +LK +L L ++
Sbjct: 477 NLTDIKELKLNKNKVSDISI--VANMKNLQRLYINDNNIT--TLKYLKDAKDLVWLTANN 532
Query: 312 CGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
I EGL N L ++K + + + ++ S L L L LE+++ ISD L+ +
Sbjct: 533 NKITSFEGLEN---LLDIKEIHVDNNKI--SKLDPLKNLKELETLSARTNVISD--LKPI 585
Query: 371 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
L +K+L L +I+D ++ L ++TG+ L L I D + + N K++ +L +
Sbjct: 586 ENLDYIKNLYLYENKISD--ISPLKNMTGMLRLYLDKNNIKD--ISVVSNMKDVTTLSLG 641
Query: 431 GGGLTD-AGVKHIKDLSSLTL 450
+ + A V ++DL++L +
Sbjct: 642 DNNIINIAPVAGLEDLATLDI 662
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 147/328 (44%), Gaps = 57/328 (17%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D + LQ L+ +QI+ L L L NLT NL +L+L
Sbjct: 405 DITPLQGLENLKKLQITATNLSELHPLKNLT----------------------NLERLEL 442
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ +L+GL+KLE L++ N I D+ L LT++K L+++ +KV+D I
Sbjct: 443 GENKIFE--VEDLQGLIKLEVLDLS-DNYI--KDISSLKNLTDIKELKLNKNKVSDISIV 497
Query: 199 ---------YLKGLSISSVIFIL-CSMIIRLFCLHVFLTSLQKL-TLLNLEGCPV---TA 244
Y+ +I+++ ++ ++ L + +TS + L LL+++ V
Sbjct: 498 ANMKNLQRLYINDNNITTLKYLKDAKDLVWLTANNNKITSFEGLENLLDIKEIHVDNNKI 557
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
+ LD L L L L+ +SD + + +K L L N+I+D + LK +T +
Sbjct: 558 SKLDPLKNLKELETLSARTNVISD--LKPIENLDYIKNLYLYENKISD--ISPLKNMTGM 613
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L LD I D +V + + ++ L L D + + ++GL +L ++++ I D
Sbjct: 614 LRLYLDKNNIKDISVV--SNMKDVTTLSLGDNNI--INIAPVAGLEDLATLDIGDNDIKD 669
Query: 365 GSLRKLAGLSSLKSL------NLDARQI 386
++ L L SL+ L NL QI
Sbjct: 670 ITV--LYNLPSLEKLVVTNNDNLPKHQI 695
>gi|313485061|gb|ADR53004.1| InlA [Listeria monocytogenes]
Length = 724
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|357615345|gb|EHJ69606.1| hypothetical protein KGM_07261 [Danaus plexippus]
Length = 438
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 147/325 (45%), Gaps = 46/325 (14%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFS-KIGSL 280
V SL + + L+ + D+++AL L L+L+ C D F+ ++ +L
Sbjct: 108 VLFASLARRGVRRLQVLSLRRGLRDAVAALPGLESLSLSGCYSVTDAALASAFATELPAL 167
Query: 281 KVLNLGF-NEITDECLVHL-KGLTNLESLNLDSC-------------------------- 312
K L+L ++TD L + + L NLE L L C
Sbjct: 168 KRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSC 227
Query: 313 -GIGDEGLVNL------TGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGI 362
+ D+G+ +L G L+ L L D Q + L+H + GL L+SINLSF +
Sbjct: 228 WHVNDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAV 287
Query: 363 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR- 419
+D LR LA L L+ +NL A ++D G+A L L LD+ F ++ D ++
Sbjct: 288 TDAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATL 347
Query: 420 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNV 478
LR L + LTD G++ + LS L LN+ Q +TD+ L + GL L ++++
Sbjct: 348 GLSGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDL 407
Query: 479 SN-SRITSAGLRHLKPLKNLRSLTL 502
+ IT GL H+ L L L L
Sbjct: 408 YGCTCITHEGLDHIVKLPRLSVLNL 432
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 71/320 (22%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFN 89
AL+ L L V D + IA +L ++L G +VTD+GL+ + L+ L+
Sbjct: 166 ALKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLR 225
Query: 90 FCIQISDGGLEHL------RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
C ++D G+ HL RG L L + +T + +K A
Sbjct: 226 SCWHVNDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAA--------------- 270
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-- 200
GL KL+S+N+ +C +TD+ ++ L+ L +L+ + + +C V+D+G+A+L
Sbjct: 271 --------TGLPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAE 322
Query: 201 ----KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
+ L +S FC V +L TL L L
Sbjct: 323 SGRLRALDVS-------------FCDKVGDEALSHATL-----------------GLSGL 352
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCG- 313
L+L+ C+L+D+G E+ +++ L+ LN+G ++TD L L +GL NL++++L C
Sbjct: 353 RCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLYGCTC 412
Query: 314 IGDEGLVNLTGLCNLKCLEL 333
I EGL ++ L L L L
Sbjct: 413 ITHEGLDHIVKLPRLSVLNL 432
>gi|115504803|ref|XP_001219194.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|83642676|emb|CAJ16709.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 735
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 189/461 (40%), Gaps = 65/461 (14%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG+ +++ L ++ + L+ LD +FC + D + + + L L+ + +IT
Sbjct: 329 LDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTLEELNLKGCTSIT- 385
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G+ L+NL L++ G L N+ + L L++ C + D
Sbjct: 386 EGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCWGVASLD--------- 436
Query: 182 LKSLQ--ISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
S+Q + K + +++G++ L L KL LLN+
Sbjct: 437 -SSVQTAVRMRKGSYPLARHIEGINA--------------------LGRLPKLRLLNMSS 475
Query: 240 CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
PVT CL L SL +LNL+ C L+D S + S+K
Sbjct: 476 TPVTDECLHGLQMCKSLVWLNLSLCANLTD-----VSPLSSVK----------------- 513
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
LE ++L CG G +L L L+ L+L +T + L ++ + S L
Sbjct: 514 ----TLEEVDLGCCGNLKWGAGSLRRLPQLRILDLKNTVITDHCLGDVTYGGGVVSRMLG 569
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAY 417
G++D S + + + LD T +A LTS+T L L G R G
Sbjct: 570 RCGMADLSFSRWSIRRGGNLVRLDLSSCWGLTDIAHLTSITTLEELRFTGCRNLKDGVDA 629
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
L L L++ G +TD ++ + SL LN+S NLTD + +S ++ L LN
Sbjct: 630 LGQLPVLHLLDLSGTSITDDSLQGLSTCRSLVTLNISSCANLTD--VSPLSRISSLEELN 687
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 518
+ S+ G+ L L L + L + + L+ R
Sbjct: 688 LQKSKHIRRGIDELVSLPRLYLVYLCRADFSRGVAEELEKR 728
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
E +++ L+ L+L + D+CL + L+ L L SC + + LT + +L+ L
Sbjct: 177 EAVARLPRLRALDLSETLVNDKCLHAISACKTLQQLGLSSCKRLRD-VSPLTQIASLEEL 235
Query: 332 ELSD----TQVGS-SGLRHLSGLTNLESINLSF---------TGISD------GSLRKLA 371
LS +VG+ L HL L +L ++L++ TG+++ L +A
Sbjct: 236 NLSHCENLKEVGALYRLSHLFRL-DLRGVHLTYRVVYSLSKCTGLTELYVSSCEGLSGVA 294
Query: 372 GLSSLKSL-NLDA---RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
LS+L+SL +LD + + TG L L L LDL G I++ + K LR L
Sbjct: 295 WLSNLESLGDLDVQWRKNLKHTG-DVLACLPLLRVLDLSGTSISNESLWNISESKLLRRL 353
Query: 428 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
++ GG+ D + I D+ +L LNL + C + ++ + L L LN+SN+ + S
Sbjct: 354 DLSFCGGVKD--ISPISDIVTLEELNL-KGCTSITEGVDKLGNLVNLHILNMSNTPLQSG 410
Query: 487 GLRHLKPLKNLRSLTLESCKVTAN 510
L ++ +++L L L SC A+
Sbjct: 411 FLYNISSIESLVELDLSSCWGVAS 434
>gi|343413825|emb|CCD21196.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 510
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 129/410 (31%), Positives = 196/410 (47%), Gaps = 65/410 (15%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD + C I+D + L LS+L +L IT + + L +L LDL CT
Sbjct: 2 LDLSHCTGITD--VSPLSKLSSLRTLGLSHCTGIT--DVSPLSKLSSLRTLDLSHCT--- 54
Query: 146 GGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
G+ ++ L KL SL+ + +C +D+ PLS L++L++L +S C+ +TD + L
Sbjct: 55 -GITDVSPLSKLSSLHTLGLSHCTGITDVPPLSVLSSLRTLGLSHCTGITD-----VSPL 108
Query: 204 SISSVIFIL----CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
S+ S + +L C+ I + L+ L L L+L C + LS L SL L
Sbjct: 109 SVFSSLRMLYLSHCTGITDVS----PLSKLSSLRTLDLSHC-TGITDVSPLSKLSSLHTL 163
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDE 317
L+ C D SK+ SL L+L ITD + L L++L +L L C GI D
Sbjct: 164 GLSHCTGITD-VSPLSKLSSLHTLDLSHCTGITD--VPPLSVLSSLRTLGLSHCTGITD- 219
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
+ L+ L +L+ L+LS G + + LS L++L ++ LS TGI+D + L+ LSSL
Sbjct: 220 -VSPLSVLSSLRMLDLSHCT-GITDVSPLSKLSSLRTLGLSHCTGITD--VSPLSKLSSL 275
Query: 377 KSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITD---------------------S 413
L L ITD ++ LT++ G L L ITD +
Sbjct: 276 HILGLSHCTGITD--VSPLTTIIGFEKLYLSNCTGITDVSPLSKLSSLRSLDLSHCTGIT 333
Query: 414 GAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
+ L +LR+L++ C G A V + +LSSL +LNLS +TD
Sbjct: 334 DVSPLSELSSLRTLDLSHCRG---IANVSPLSNLSSLRMLNLSHCTGITD 380
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 148/504 (29%), Positives = 235/504 (46%), Gaps = 77/504 (15%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L +L +
Sbjct: 21 SLRTLGLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSKLSSLHTLGLSH 75
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I+D + L LS+L +L IT + F+ +L L L CT G+
Sbjct: 76 CTGITD--VPPLSVLSSLRTLGLSHCTGITDVSPLSVFS---SLRMLYLSHCT----GIT 126
Query: 150 NLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLS-IS 206
++ L KL SL + +C +D+ PLS L++L +L +S C+ +TD ++ L LS +
Sbjct: 127 DVSPLSKLSSLRTLDLSHCTGITDVSPLSKLSSLHTLGLSHCTGITD--VSPLSKLSSLH 184
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 266
++ C+ I + L V L+SL+ L L + G + LS L SL L+L+ C
Sbjct: 185 TLDLSHCTGITDVPPLSV-LSSLRTLGLSHCTG----ITDVSPLSVLSSLRMLDLSHCTG 239
Query: 267 SDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 324
D SK+ SL+ L L ITD + L L++L L L C GI D + LT
Sbjct: 240 ITD-VSPLSKLSSLRTLGLSHCTGITD--VSPLSKLSSLHILGLSHCTGITD--VSPLTT 294
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
+ + L LS+ + + TGI+D + L+ LSSL++L+L
Sbjct: 295 IIGFEKLYLSNCTGITDVSPLSKLSSLRSLDLSHCTGITD--VSPLSELSSLRTLDLSHC 352
Query: 385 QITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYLRNFKNLRSLEI--CGG------ 432
+ G+A ++ L+ L+ L + ITD + L F +LR+L++ C G
Sbjct: 353 R----GIANVSPLSNLSSLRMLNLSHCTGITD--VSPLSVFSSLRTLDLSHCTGITNVSP 406
Query: 433 ----------------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
G+TD V + +LSSL LNLS +TD + +S L+ L +L
Sbjct: 407 LSNLSSLRSLDLSHCTGITD--VSPLSELSSLEKLNLSHCTAITD--VSPLSELSSLHTL 462
Query: 477 NVSNSRITSAGLRHLKPLKNLRSL 500
++S+ G+ + PL L SL
Sbjct: 463 DLSH----CTGITDVSPLSKLSSL 482
>gi|406830084|ref|ZP_11089678.1| hypothetical protein SpalD1_00552 [Schlesneria paludicola DSM
18645]
Length = 249
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L +LE+++L + +SD L+ L LS L+ L L+ I D GL L LTGL L L G
Sbjct: 110 LKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPLTGLQGLHLDGT 169
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+ITD+G +L++ +L+ L++ ++DAGV+ + DL L +LNL+++
Sbjct: 170 KITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQILNLAES 217
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+NL+ +D + L L L++L+L+ ++D GL +L L+ L L L I D G
Sbjct: 92 VNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIG 151
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
YLR L+ L + G +TDAGVKH++ +S L +L LS N ++D +E++ L L
Sbjct: 152 LGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLS-NTLVSDAGVEVLFDLHELQ 210
Query: 475 SLNVSNSRITSAGLRHLK 492
LN++ SR+T G L+
Sbjct: 211 ILNLAESRVTRRGFVSLR 228
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 74/136 (54%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+NLNR + +D + L+ L+L ++++DE L L L+ L L L+ GI D G
Sbjct: 92 VNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIG 151
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L L L L+ L L T++ +G++HL +++L+ + LS T +SD + L L L+
Sbjct: 152 LGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQI 211
Query: 379 LNLDARQITDTGLAAL 394
LNL ++T G +L
Sbjct: 212 LNLAESRVTRRGFVSL 227
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 78/148 (52%)
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+F + V+NL + TD + L L +LE+L+L+ + DEGL +L L L+ L
Sbjct: 82 QFPLFDRITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLG 141
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L+ T + GL +L LT L+ ++L T I+D ++ L +S L+ L L ++D G+
Sbjct: 142 LNHTGIADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVE 201
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRN 420
L L L L+L +R+T G LR
Sbjct: 202 VLFDLHELQILNLAESRVTRRGFVSLRQ 229
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%)
Query: 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
++T++NL T + SL L L L+L +SD+G + ++ L+ L L I
Sbjct: 88 RITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGI 147
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 350
D L +L+ LT L+ L+LD I D G+ +L + +L+ L+LS+T V +G+ L L
Sbjct: 148 ADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLH 207
Query: 351 NLESINLS 358
L+ +NL+
Sbjct: 208 ELQILNLA 215
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%)
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
G+ G +T + +NL+ D + +L L +L+ L+L +
Sbjct: 63 GTFSTEYFGPEWLTPSLRTQFPLFDRITVVNLNRGKNTDRVVPSLCLLKHLETLDLELSD 122
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
V GL+ L L+ L + L+ TGI+D L L L+ L+ L+LD +ITD G+ L S+
Sbjct: 123 VSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPLTGLQGLHLDGTKITDAGVKHLQSM 182
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
+ L L L ++D+G L + L+ L + +T G
Sbjct: 183 SHLQILKLSNTLVSDAGVEVLFDLHELQILNLAESRVTRRG 223
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L+ L L+LE V+ L SL L L L LN ++D G + L+ L+L
Sbjct: 110 LKHLETLDLELSDVSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPLTGLQGLHLDGT 169
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
+ITD + HL+ +++L+ L L + + D G+ L L L+ L L++++V G
Sbjct: 170 KITDAGVKHLQSMSHLQILKLSNTLVSDAGVEVLFDLHELQILNLAESRVTRRGF 224
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L LE+L+++ + ++D +K L L+ L+ L ++ + + D G+ YL+ L
Sbjct: 110 LKHLETLDLELSD-VSDEGLKSLGRLSQLRGLGLNHTGIADIGLGYLRPL---------- 158
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
T LQ L +L+G +T A + L ++ L L L+ +SD G E
Sbjct: 159 -------------TGLQGL---HLDGTKITDAGVKHLQSMSHLQILKLSNTLVSDAGVEV 202
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLK 299
+ L++LNL + +T V L+
Sbjct: 203 LFDLHELQILNLAESRVTRRGFVSLR 228
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
K+L +L++ ++D G+K + LS L L L+ + + D L + LTGL L++ +
Sbjct: 111 KHLETLDLELSDVSDEGLKSLGRLSQLRGLGLN-HTGIADIGLGYLRPLTGLQGLHLDGT 169
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVT 508
+IT AG++HL+ + +L+ L L + V+
Sbjct: 170 KITDAGVKHLQSMSHLQILKLSNTLVS 196
>gi|112959522|gb|ABI27288.1| truncated internalin A [Listeria monocytogenes]
Length = 538
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 31 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 84
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 85 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 136
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 137 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 163
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 164 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 220
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 221 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 275
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 276 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 333
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 334 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 392
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 23 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 78
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 79 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 131
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 132 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 187
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 188 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 241
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 242 ----NISPLAGLTALT 253
>gi|156403875|ref|XP_001640133.1| predicted protein [Nematostella vectensis]
gi|156227266|gb|EDO48070.1| predicted protein [Nematostella vectensis]
Length = 779
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 117/470 (24%), Positives = 205/470 (43%), Gaps = 99/470 (21%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT SL+ C LQDL L + GV D+ M IA +SLL ++LS ++DS L +L
Sbjct: 310 LTRESLKIIGQCRNLQDLNLSEVKGVTDEVMKDIAMGCTSLLYLNLSSCLISDSTLRYLA 369
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGL---- 130
+ C+N+Q L +C + S+ GL +L +G + L IT G K F G+
Sbjct: 370 RYCTNMQYLSLAYCTKFSNKGLSYLANGKGCHKVIYLDLSGCEQITDDGYK-FVGMGCSS 428
Query: 131 INLVKLD--------------------------------------LERCTRIHGGLV--- 149
+N + L+ L C ++H +
Sbjct: 429 LNTIILNDLPGLRDACIQSLTSECRTLRTVSILNSPFLSDTAYKSLALCRKLHKLRIEGN 488
Query: 150 ------NLKGLMK----LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI- 197
++K L K LE + + C +TD +K L+ + +L + ++ C ++ D+G+
Sbjct: 489 NRITDASVKVLAKSCSQLEHVYMVDCPRLTDLSLKALASVRHLNVINVADCVRIQDTGVR 548
Query: 198 --------AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLD 248
+ +K L++++ + ++ ++I R V+ L + C VT A ++
Sbjct: 549 QIVEGPSGSKIKELNLTNCVRVMPTVIRRF----VYCFRCHNLVYASFCYCEHVTDAGVE 604
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK---------VLNLGFNEITDECLVHLK 299
L L +L ++++ C +SD G ++ + +LG ++ +C
Sbjct: 605 LLGTLPNLISIDMSGCNISDHGVSSLGNNAMMRDVVIAECSAITDLGLQKMCQQCRF--- 661
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCN-LKCLELSDT-QVGSSGLRHLSGLTN-LESI 355
LE+L++ C + D + NL C L+ L LS ++ S L++LSG+ + LE +
Sbjct: 662 ----LENLDISHCTNLTDNAIKNLVFCCRLLRTLNLSGCDKLTDSSLQYLSGVCHYLEML 717
Query: 356 NLS-FTGISDGSLRKL-AGLSSLKSLN-LDARQITDTGLAALTSLTGLTH 402
+LS T +SD +LR L G L+SL L R IT + + H
Sbjct: 718 DLSNCTLVSDKALRYLRKGCKRLQSLTILYCRNITKNAVQKFQMKCTVNH 767
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 142/576 (24%), Positives = 246/576 (42%), Gaps = 106/576 (18%)
Query: 2 LPRDISQQIFNELVY---SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSS 58
LPR ++ +IF+ + SRC R C + + N W + SQ
Sbjct: 234 LPRHVALRIFSYITIGDLSRCA--------RVCRSWKILIH----ANILWSKIDMSQ--- 278
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
V ++ + LIH K L L+ C ++ L+ + NL L+
Sbjct: 279 ---VKHRATNKATAKLIH-KCRPFLGHLNLKNCYNLTRESLKIIGQCRNLQDLNLSEVKG 334
Query: 119 ITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T + MK A G +L+ L+L C I+DS ++ L+
Sbjct: 335 VTDEVMKDIAMGCTSLLYLNLSSCL-------------------------ISDSTLRYLA 369
Query: 178 GL-TNLKSLQIS-CSKVTDSGIAYL-KGLSISSVIFIL---CSMIIRLFCLHVFL--TSL 229
TN++ L ++ C+K ++ G++YL G VI++ C I V + +SL
Sbjct: 370 RYCTNMQYLSLAYCTKFSNKGLSYLANGKGCHKVIYLDLSGCEQITDDGYKFVGMGCSSL 429
Query: 230 QKLTLLNLEGCPVTAACLDSL-SALGSLFYLN-LNRCQLSDDGCEKFSKIGSLKVLNL-G 286
+ L +L G + AC+ SL S +L ++ LN LSD + + L L + G
Sbjct: 430 NTIILNDLPG--LRDACIQSLTSECRTLRTVSILNSPFLSDTAYKSLALCRKLHKLRIEG 487
Query: 287 FNEITDECL-VHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 343
N ITD + V K + LE + + C + D L L + +L + ++D ++ +G+
Sbjct: 488 NNRITDASVKVLAKSCSQLEHVYMVDCPRLTDLSLKALASVRHLNVINVADCVRIQDTGV 547
Query: 344 RHL----SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA----RQITDTGLAAL 394
R + SG + ++ +NL+ + +R+ +L + +TD G+ L
Sbjct: 548 RQIVEGPSG-SKIKELNLTNCVRVMPTVIRRFVYCFRCHNLVYASFCYCEHVTDAGVELL 606
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAG--------------- 438
+L L +D+ G I+D G + L N +R + I +TD G
Sbjct: 607 GTLPNLISIDMSGCNISDHGVSSLGNNAMMRDVVIAECSAITDLGLQKMCQQCRFLENLD 666
Query: 439 VKHIKDLSS------------LTLLNLSQNCNLTDKTLELISGLTGLVS-LNVSNSRITS 485
+ H +L+ L LNLS LTD +L+ +SG+ + L++SN + S
Sbjct: 667 ISHCTNLTDNAIKNLVFCCRLLRTLNLSGCDKLTDSSLQYLSGVCHYLEMLDLSNCTLVS 726
Query: 486 -AGLRHL-KPLKNLRSLTLESCK-VTANDIKRLQSR 518
LR+L K K L+SLT+ C+ +T N +++ Q +
Sbjct: 727 DKALRYLRKGCKRLQSLTILYCRNITKNAVQKFQMK 762
>gi|440795996|gb|ELR17105.1| leucine rich repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 811
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 131/268 (48%), Gaps = 25/268 (9%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLE-----RCTRIHGGLVNLKGLMKLESLNIK-WCNCIT 169
N G+K + ++ +LDL C R+ + ++GL SLN++ + + ++
Sbjct: 87 NMGFALSGLKVLSRFAHVARLDLSGQKALDCRRVGPVIARMRGLT---SLNLRRYPHHLS 143
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM-IIRLFCLHVFLTS 228
+DMK ++GLT L L +S S+V D+ L GLS S L S+ I R L L +
Sbjct: 144 LADMKSIAGLTGLAELNLSRSRVEDAHANLLAGLSSS-----LTSLDISRCRGLRGDLWA 198
Query: 229 LQKLT---LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L KLT LN+ + LD + + SL LN + D + + + L+ L+L
Sbjct: 199 LPKLTQLRALNISSVDLLPLVLDYVDQMSSLVRLNASMSNWLRD-TSRLAGLTQLEDLDL 257
Query: 286 G-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGL 343
+ +TDE L L+ LT L LNL + D GL + LT L NL+ L+LS+T +
Sbjct: 258 ANVSRMTDESLEGLQSLTRLRRLNLKGTDLSDYGLTMFLTNLHNLELLDLSNTAASKAPK 317
Query: 344 RHLSG--LTNLESINL--SFTGISDGSL 367
+ L L +L +NL ++ ++G L
Sbjct: 318 KLLDQGRLPSLRQVNLIQNYRAFTEGDL 345
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 27/186 (14%)
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
+ + GL +L L + + ++ ++GLT L +NLS + + D LAGLSS
Sbjct: 124 IARMRGLTSLN-LRRYPHHLSLADMKSIAGLTGLAELNLSRSRVEDAHANLLAGLSS--- 179
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
LT LD+ R L LR+L I L
Sbjct: 180 --------------------SLTSLDISRCRGLRGDLWALPKLTQLRALNISSVDLLPLV 219
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNL 497
+ ++ +SSL LN S + L D + ++GLT L L+++N SR+T L L+ L L
Sbjct: 220 LDYVDQMSSLVRLNASMSNWLRDTS--RLAGLTQLEDLDLANVSRMTDESLEGLQSLTRL 277
Query: 498 RSLTLE 503
R L L+
Sbjct: 278 RRLNLK 283
>gi|290986035|ref|XP_002675730.1| predicted protein [Naegleria gruberi]
gi|284089328|gb|EFC42986.1| predicted protein [Naegleria gruberi]
Length = 483
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 130/280 (46%), Gaps = 31/280 (11%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT 323
++ D C S++ SL V + N I DE + + L L L + G+GDEG+ L
Sbjct: 124 EIDDVKCLVNSQLTSLDVCD---NSIGDEGVTLIANSLKQLTKLGIGQVGVGDEGVRQLE 180
Query: 324 GLCNLKCLELSDTQVGSSGLRHL--SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L L L+ S S L + + L L+++++ I D ++ + LS L SL++
Sbjct: 181 KLTQLTELDASCNDFTISVLVQVIDNSLKQLKTLSVYSCNIEDEHMKDITTLSQLTSLSV 240
Query: 382 DARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
+IT L + S+ LT+L++ I D+G YL N K L+ L I ++ G +
Sbjct: 241 GINRITGNSLKLIGYSMKDLTYLEVANNEIGDAGTEYLCNLKKLKELSISSNKISQLGFE 300
Query: 441 HIKDLSSLTLLNLSQNCNLTDK--------TLELIS--------------GLTGLVSLNV 478
HIK + L +L + N N+ ++ TL +IS + L LN+
Sbjct: 301 HIKSMDQLRILQCN-NTNIMNQVSTMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNL 359
Query: 479 SNSRITSAG-LRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+ I +R + +++LR L LESC + N ++ + S
Sbjct: 360 YKNAINDMDFVRFIASIQHLRELHLESCSINDNSVEIISS 399
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 140/316 (44%), Gaps = 46/316 (14%)
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
EG + A L L+ LG + + + D+G + K+ L L+ N+ T LV
Sbjct: 149 EGVTLIANSLKQLTKLG------IGQVGVGDEGVRQLEKLTQLTELDASCNDFTISVLVQ 202
Query: 298 L--KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR----HLSGLTN 351
+ L L++L++ SC I DE + ++T L L L + ++ + L+ + LT
Sbjct: 203 VIDNSLKQLKTLSVYSCNIEDEHMKDITTLSQLTSLSVGINRITGNSLKLIGYSMKDLTY 262
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
LE N I D L L LK L++ + +I+ G + S+ L L I
Sbjct: 263 LEVAN---NEIGDAGTEYLCNLKKLKELSISSNKISQLGFEHIKSMDQLRILQCNNTNIM 319
Query: 412 D--SGAAYL--------------------RNFKNLRSLEICGGGLTDAG-VKHIKDLSSL 448
+ S ++L +N K+L L + + D V+ I + L
Sbjct: 320 NQVSTMSHLETLVVISDCKINIEIFESMSKNMKSLTKLNLYKNAINDMDFVRFIASIQHL 379
Query: 449 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT------- 501
L+L ++C++ D ++E+IS + L L V ++ IT G++HL L +LR L
Sbjct: 380 RELHL-ESCSINDNSVEIISSIQNLRGLFVPSNDITDGGVKHLTKLTSLRELDIYCNPIG 438
Query: 502 LESCKVTANDIKRLQS 517
LE K+ ++ +K L S
Sbjct: 439 LEGVKIISSGLKGLTS 454
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 141/311 (45%), Gaps = 48/311 (15%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
L +L++L++ CN I D MK ++ L+ L SL + +++T +
Sbjct: 208 LKQLKTLSVYSCN-IEDEHMKDITTLSQLTSLSVGINRITGNS----------------- 249
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
L + S++ LT L + + A + L L L L+++ ++S G E
Sbjct: 250 --------LKLIGYSMKDLTYLEVANNEIGDAGTEYLCNLKKLKELSISSNKISQLGFEH 301
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLT-GLCNLKCL 331
+ L++L I ++ + +++LE+L + S C I E +++ + +L L
Sbjct: 302 IKSMDQLRILQCNNTNIMNQ----VSTMSHLETLVVISDCKINIEIFESMSKNMKSLTKL 357
Query: 332 ELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L + +R ++ + +L ++L I+D S+ ++ + +L+ L + + ITD G
Sbjct: 358 NLYKNAINDMDFVRFIASIQHLRELHLESCSINDNSVEIISSIQNLRGLFVPSNDITDGG 417
Query: 391 LAALTSLTGLTHLDLF-------GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
+ LT LT L LD++ G +I SG K L SL I + + G I+
Sbjct: 418 VKHLTKLTSLRELDIYCNPIGLEGVKIISSG------LKGLTSLTISKKDIGERGQYLIR 471
Query: 444 --DLSSLTLLN 452
+L +LT ++
Sbjct: 472 LMNLDTLTYVD 482
>gi|290892407|ref|ZP_06555401.1| InlA protein [Listeria monocytogenes FSL J2-071]
gi|290557973|gb|EFD91493.1| InlA protein [Listeria monocytogenes FSL J2-071]
Length = 796
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 101 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 154
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 155 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 206
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 207 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 233
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 234 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 290
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 291 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 345
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 346 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 403
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 404 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 462
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 93 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 148
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 149 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 201
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 202 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 257
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 311
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 312 ----NISPLAGLTALT 323
>gi|112959440|gb|ABI27247.1| truncated internalin A [Listeria monocytogenes]
gi|112959442|gb|ABI27248.1| truncated internalin A [Listeria monocytogenes]
gi|112959448|gb|ABI27251.1| truncated internalin A [Listeria monocytogenes]
gi|112959454|gb|ABI27254.1| truncated internalin A [Listeria monocytogenes]
gi|112959458|gb|ABI27256.1| truncated internalin A [Listeria monocytogenes]
gi|112959460|gb|ABI27257.1| truncated internalin A [Listeria monocytogenes]
gi|112959462|gb|ABI27258.1| truncated internalin A [Listeria monocytogenes]
gi|112959472|gb|ABI27263.1| truncated internalin A [Listeria monocytogenes]
gi|112959480|gb|ABI27267.1| truncated internalin A [Listeria monocytogenes]
gi|112959482|gb|ABI27268.1| truncated internalin A [Listeria monocytogenes]
gi|112959488|gb|ABI27271.1| truncated internalin A [Listeria monocytogenes]
gi|112959514|gb|ABI27284.1| truncated internalin A [Listeria monocytogenes]
gi|112959538|gb|ABI27296.1| truncated internalin A [Listeria monocytogenes]
gi|112959542|gb|ABI27298.1| truncated internalin A [Listeria monocytogenes]
gi|112959548|gb|ABI27301.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|328704557|ref|XP_003242529.1| PREDICTED: leucine-rich repeat-containing protein 15-like
[Acyrthosiphon pisum]
Length = 427
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 173/409 (42%), Gaps = 22/409 (5%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSN 82
V+ E C D + Y V D+ D I +L DL +++ D + L +
Sbjct: 37 VTAECPEGCTCYDEVVECYEQVLDRIPDRIPQATKTL---DLCYNEIRDIESLAL--LTE 91
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER-- 140
LQSLD +F +I D +E L L+ L +L NN I+ + F L L L L R
Sbjct: 92 LQSLDLSFN-EIMD--IESLAHLTELKTLGLNNNN-ISEVKNRVFENLSQLQILFLHRNK 147
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
I G N L L+ L + + N I D++ GLT L L +S + + +
Sbjct: 148 IENIETGAFN--NLTSLKELELDYNN-IHKLDLEMFKGLTKLDELGLSNNNIKELKNGVF 204
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
L ++++ + I+ + L LT L+ L L N + +LS L L L+
Sbjct: 205 SNLRNLQLLYLDNNKIMEIESL-AHLTELKTLYLRNNYVSELKHGAFANLSQLQILL-LH 262
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
N+ + + G F+ + SLK L L +N I L KGLT L L L + I D
Sbjct: 263 TNKIENIETGA--FNNLTSLKELELDYNNIHKLDLEMFKGLTKLVKLGLSNNNISDVKNC 320
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
L L+ L LS+ + S L+H + L+ L+ + L I + L+SLK
Sbjct: 321 VFENLSKLQILYLSNNNI--SELKHGAFANLSQLQILFLHRNKIENIENGAFNNLTSLKE 378
Query: 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
L LD I L LT L L L I++ N +NL+ L
Sbjct: 379 LELDYNNIHTLDLEMFKGLTKLDKLGLSNNNISEVKNGVFSNLRNLQLL 427
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 144/374 (38%), Gaps = 73/374 (19%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231
D++ L+ LT L+SL +S +++ D I S+ LT L+
Sbjct: 82 DIESLALLTELQSLDLSFNEIMD----------IESL---------------AHLTELKT 116
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L N V ++LS L LF L+R ++ + F+ + SLK L L +N I
Sbjct: 117 LGLNNNNISEVKNRVFENLSQLQILF---LHRNKIENIETGAFNNLTSLKELELDYNNIH 173
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLT 350
L KGLT L+ L L + I + + L NL+ L L + ++ L HL+ L
Sbjct: 174 KLDLEMFKGLTKLDELGLSNNNIKELKNGVFSNLRNLQLLYLDNNKIMEIESLAHLTELK 233
Query: 351 NLESINLSFTGISDGSLRKLA---------------------GLSSLKSLNLDARQITDT 389
L N + + G+ L+ L+SLK L LD I
Sbjct: 234 TLYLRNNYVSELKHGAFANLSQLQILLLHTNKIENIETGAFNNLTSLKELELDYNNIHKL 293
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
L LT L L L I+D N L+ L + +++ +LS L
Sbjct: 294 DLEMFKGLTKLVKLGLSNNNISDVKNCVFENLSKLQILYLSNNNISELKHGAFANLSQLQ 353
Query: 450 LLNLSQN-----------------------CNLTDKTLELISGLTGLVSLNVSNSRITSA 486
+L L +N N+ LE+ GLT L L +SN+ I+
Sbjct: 354 ILFLHRNKIENIENGAFNNLTSLKELELDYNNIHTLDLEMFKGLTKLDKLGLSNNNISEV 413
Query: 487 GLRHLKPLKNLRSL 500
L+NL+ L
Sbjct: 414 KNGVFSNLRNLQLL 427
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
++++L + I D + LA L+ L+SL+L +I D + +L LT L L L I++
Sbjct: 71 KTLDLCYNEIRD--IESLALLTELQSLDLSFNEIMD--IESLAHLTELKTLGLNNNNISE 126
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
N L+ L + + + +L+SL L L N N+ LE+ GLT
Sbjct: 127 VKNRVFENLSQLQILFLHRNKIENIETGAFNNLTSLKELELDYN-NIHKLDLEMFKGLTK 185
Query: 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
L L +SN+ I L+NL+ L L++ K+
Sbjct: 186 LDELGLSNNNIKELKNGVFSNLRNLQLLYLDNNKI 220
>gi|219821396|gb|ACL37842.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|168704644|ref|ZP_02736921.1| hypothetical protein GobsU_34225 [Gemmata obscuriglobus UQM 2246]
Length = 952
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 170/346 (49%), Gaps = 36/346 (10%)
Query: 46 DKWMDVIASQ---GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
DK ++++ +Q G SL + LS +D+ D L L + L+ LD + C +SD L
Sbjct: 619 DKRLEMLWTQIRRGLSLRRLVLSKTDIAD--LSPLAPLTALEELDLSGCAGVSD-----L 671
Query: 103 RGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+NLT+L F + + A L L LDL C + L L L LE LN
Sbjct: 672 SPLANLTALRFLDLSGCAGGADLSPLANLTALRFLDLSGCAGV-SDLAPLANLTALEGLN 730
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLSISSVIFILCSMIIRL 219
++ C + SD+ PL+ LT L+ L +S C+ D S +A L GL + C+ + L
Sbjct: 731 LRGCAGV--SDLSPLANLTGLRHLNLSGCAGWADLSPLANLTGL--RHLNLNGCTGVSDL 786
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
L LT+L++ L+L GC + L L+ L +L L+L+ C D + +
Sbjct: 787 SPL-APLTALEE---LDLSGC-AGVSDLSPLANLTALEGLDLSGCAGVSD-LSPLAPHTA 840
Query: 280 LKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ- 337
L+ L+L G ++ CL L T L L+L C G+ +L+ L NL LE D
Sbjct: 841 LRFLDLSGCAGVS--CLSPLAPHTALRFLDLSGCA----GVSDLSPLANLTALEDLDLSG 894
Query: 338 -VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 381
G S L L+ LT LE ++LS TG+ D L LA L++L+ L+L
Sbjct: 895 CAGVSDLSPLANLTALEGLDLSGCTGVLD--LSPLAPLTALQFLDL 938
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ- 337
SL+ L L +I D L L LT LE L+L C G+ +L+ L NL L D
Sbjct: 634 SLRRLVLSKTDIAD--LSPLAPLTALEELDLSGCA----GVSDLSPLANLTALRFLDLSG 687
Query: 338 -VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 394
G + L L+ LT L ++LS G+SD L LA L++L+ LNL ++D L+ L
Sbjct: 688 CAGGADLSPLANLTALRFLDLSGCAGVSD--LAPLANLTALEGLNLRGCAGVSD--LSPL 743
Query: 395 TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 452
+LTGL HL+L G A D + L N LR L + G G++D + + L++L L+
Sbjct: 744 ANLTGLRHLNLSGCAGWAD--LSPLANLTGLRHLNLNGCTGVSD--LSPLAPLTALEELD 799
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN---LRSLTLESC 505
LS ++D L ++ LT L L++S AG+ L PL LR L L C
Sbjct: 800 LSGCAGVSD--LSPLANLTALEGLDLSG----CAGVSDLSPLAPHTALRFLDLSGC 849
>gi|313485065|gb|ADR53005.1| InlA [Listeria monocytogenes]
Length = 801
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290979531|ref|XP_002672487.1| leucine-rich repeat domain protein [Naegleria gruberi]
gi|284086064|gb|EFC39743.1| leucine-rich repeat domain protein [Naegleria gruberi]
Length = 612
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 16/247 (6%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
+ S +L LN+N ++ + SK+ L LN+G N+IT HLK L NL +L
Sbjct: 349 NDFSMFKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNLTAL 408
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGS 366
+L+ CG+ D + L L + L L + + L+ L S L NL +N G S
Sbjct: 409 DLEDCGVKD--ITPLAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSE--GNELTS 464
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD---LFGARITDSGAAYL--RNF 421
L L+ L++++ L L + + +D L L L +LD + I + GA L F
Sbjct: 465 LAPLSLLTNIQKLKLKSLKFSDIKEMQLQHLLKLEYLDKLSITSMDIGEEGAKILGRGRF 524
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG--LTGLVSLNVS 479
K+L+ L IC L D + I +SL L+L +N NLT+K + +IS L + +NVS
Sbjct: 525 KHLK-LNIC--ELHDRALPFILTNTSLRTLDLQKN-NLTEKGVNIISKSYLPFMQKVNVS 580
Query: 480 NSRITSA 486
++ ++
Sbjct: 581 ENKYYAS 587
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
G+ + +L LN++ +I + L A++ +T LT L++ IT + +L+ NL
Sbjct: 346 GNRNDFSMFKNLTELNVNETKIGNKVLLAISKMTQLTSLNIGKNDITKNVFKHLKKLDNL 405
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTL---LNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
+L+ L D GVK I L+ LT LNL N + +L+S L L LN +
Sbjct: 406 TALD-----LEDCGVKDITPLAKLTKITKLNLKNNYLKGEWLQKLVSYLPNLRKLNSEGN 460
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 520
+TS L L L N++ L L+S K + DIK +Q + L
Sbjct: 461 ELTS--LAPLSLLTNIQKLKLKSLKFS--DIKEMQLQHL 495
>gi|85679224|gb|ABC72028.1| InlA [Listeria monocytogenes]
Length = 794
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 89 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 144
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 145 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 196
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 197 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 252
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 253 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 307
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 -----NISPLAGLTALT 319
>gi|330806226|ref|XP_003291073.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
gi|325078753|gb|EGC32387.1| hypothetical protein DICPUDRAFT_98891 [Dictyostelium purpureum]
Length = 793
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 157/341 (46%), Gaps = 39/341 (11%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQ--DLCLGQYPGVNDKWMDVIAS-QGSS 58
LP ++ Q+I + L+ +L FR+C L +LC + P ++D W+++ S+
Sbjct: 294 LPDELCQKIIPLFQRRKILSSRTLSLFRNCKLTRLELCGKEVP-ISDDWLNITKGLMAST 352
Query: 59 LLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+ V++S S +TD G+ L NLQSLD ++ +I GL L
Sbjct: 353 ITYVNISKNSLLTDQGIASLSHLRNLQSLDISYVDKIDGSGLAAL--------------- 397
Query: 118 AITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AG + L KL +E C ++ L L L SL CN +TD D +
Sbjct: 398 --------VDAG-VPLQKLQMEGCLSLKLPQLFTTLSKLKTLSSLYAGACN-MTDDDCQQ 447
Query: 176 LSGLTNLKSLQISCSKV-TDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF-LTSLQKLT 233
LS L L L + + V T+ G+ ++ LS + + I I +L + L L L
Sbjct: 448 LSQLQTLTHLDVCRNAVITNRGLQFICNLSRLTELDI--GGINQLDAQGIKCLLQLPHLE 505
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITD 292
L E C + C++ + +L SL L+L SD G + + L L+L ITD
Sbjct: 506 SLAAENCGIDDKCMNYIGSLKSLKSLSLINNPFSDVGAKHIGNLIYLTTLDLSMCANITD 565
Query: 293 ECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCL 331
LVH + L+ + LNL+ CG + D G+ +LT GL LK L
Sbjct: 566 ATLVHFRNLSQISKLNLNFCGNLTDSGVTSLTGGLSQLKTL 606
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 140/327 (42%), Gaps = 62/327 (18%)
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 271
LC II LF L+S TL C +T L S +LN+ + ++
Sbjct: 298 LCQKIIPLFQRRKILSSR---TLSLFRNCKLTRLELCGKEVPISDDWLNITKGLMA---- 350
Query: 272 EKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNLESLNL------DSCGIG---DEGLVN 321
++ +N+ N + TD+ + L L NL+SL++ D G+ D G V
Sbjct: 351 ------STITYVNISKNSLLTDQGIASLSHLRNLQSLDISYVDKIDGSGLAALVDAG-VP 403
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L L CL L Q+ ++ LS L L S+ ++D ++L+ L +L L++
Sbjct: 404 LQKLQMEGCLSLKLPQLFTT----LSKLKTLSSLYAGACNMTDDDCQQLSQLQTLTHLDV 459
Query: 382 -DARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSL--EICG------ 431
IT+ GL + +L+ LT LD+ G D+ G L +L SL E CG
Sbjct: 460 CRNAVITNRGLQFICNLSRLTELDIGGINQLDAQGIKCLLQLPHLESLAAENCGIDDKCM 519
Query: 432 ----------------GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
+D G KHI +L LT L+LS N+TD TL L+ +
Sbjct: 520 NYIGSLKSLKSLSLINNPFSDVGAKHIGNLIYLTTLDLSMCANITDATLVHFRNLSQISK 579
Query: 476 L------NVSNSRITS--AGLRHLKPL 494
L N+++S +TS GL LK L
Sbjct: 580 LNLNFCGNLTDSGVTSLTGGLSQLKTL 606
>gi|320170260|gb|EFW47159.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1306
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 114/444 (25%), Positives = 194/444 (43%), Gaps = 22/444 (4%)
Query: 16 YSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
Y+ ++ + AF+ A L DL L + + D + S ++L + ++ S +T
Sbjct: 96 YASAVSSIEANAFQGLASLIDLDLSA--NLFTELPDQVFSSLTALTFLTMTASLLTTVST 153
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L LD +F + ++ LS+L++L F +++IT + F GL +L+
Sbjct: 154 NTFTGLGALTDLDMSFSVNLATLQGSPFAPLSSLSNL-FLDSSSITTIEPQTFVGLSSLL 212
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+L ++ ++ L L+ L+++ IT GLT L L ++ + +T
Sbjct: 213 QLRMQSSLVTSLPDLSFASLSALQQLDLRRGQ-ITTISANAFQGLTTLTYLHLARNPITS 271
Query: 195 ------SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+ I L+ L + S L S+ F SL +L L++ P+TA +
Sbjct: 272 LPDNVFAPIPTLQNLFLDSTQ--LTSITSNTFA------SLTQLRTLSMRTNPLTAIPAN 323
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+ SALG+L L+L+ Q+S + FS + +L+ L+L N T GL +L L
Sbjct: 324 AFSALGALTSLDLSSNQISSIDPQAFSGMTNLQSLSLNGNPFTSLPSTVFNGLVSLNFLA 383
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
+ + + + L NL L + + + L NL+++ L T I+
Sbjct: 384 MGFTQLASIPVNLFSDLVNLLSLAAGSSPISALEPGVFFNLRNLQTLLLGGTQIATIPEN 443
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+GL+SL L+L QIT A +LT L L L G+ IT F NL SL+
Sbjct: 444 VFSGLASLTYLDLGFSQITVLPEHAFANLTLLQTLFLDGSPITSIAQTA---FDNLPSLQ 500
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLN 452
+ T H + S+L LLN
Sbjct: 501 LLSMASTQLTTIHSNEFSNLGLLN 524
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 15/252 (5%)
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
P+T+ + L+ L +L LNL Q++ F+ +G+L+ L L + +T G
Sbjct: 557 PITSLPVGVLTGLSALHLLNLGGTQIAFIEPNAFAGLGALQNLILSLSPLTSVSANTWTG 616
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT+L +L + S + + GL +L L LS + + + GL +L+++ L +T
Sbjct: 617 LTSLTNLEMSSTQLTTLSANSFNGLSSLLTLYLSSSPIATVADNAFFGLVSLQTLYLDYT 676
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I+ S AGL++L+ L L +T + L+ L +LD G+++ + +
Sbjct: 677 QIASVSPYSFAGLTALQYLTLGNTPLTGLPANVFSDLSSLINLDFSGSQLATLSSQVFQG 736
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL-------TDKTLELISGLTGL 473
L+ L++ G + L +NL + L T + +GL+ L
Sbjct: 737 LSQLQILQL--------GATRLVSLPPYVFMNLPKLNYLSLSYLLATTLPSNVFAGLSEL 788
Query: 474 VSLNVSNSRITS 485
+L + N+ +TS
Sbjct: 789 FTLELGNAYVTS 800
>gi|112961640|gb|ABI28446.1| truncated internalin A [Listeria monocytogenes]
gi|112961643|gb|ABI28448.1| truncated internalin A [Listeria monocytogenes]
gi|112961661|gb|ABI28460.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|298359724|gb|ADI77441.1| truncated internalin A [Listeria monocytogenes]
gi|298359728|gb|ADI77443.1| truncated internalin A [Listeria monocytogenes]
gi|298359760|gb|ADI77459.1| truncated internalin A [Listeria monocytogenes]
gi|298359768|gb|ADI77463.1| truncated internalin A [Listeria monocytogenes]
gi|298359778|gb|ADI77468.1| truncated internalin A [Listeria monocytogenes]
gi|298359784|gb|ADI77471.1| truncated internalin A [Listeria monocytogenes]
gi|298359796|gb|ADI77477.1| truncated internalin A [Listeria monocytogenes]
gi|298359800|gb|ADI77479.1| truncated internalin A [Listeria monocytogenes]
gi|298359816|gb|ADI77487.1| truncated internalin A [Listeria monocytogenes]
gi|298359840|gb|ADI77499.1| truncated internalin A [Listeria monocytogenes]
gi|298359850|gb|ADI77504.1| truncated internalin A [Listeria monocytogenes]
gi|298359852|gb|ADI77505.1| truncated internalin A [Listeria monocytogenes]
gi|298359860|gb|ADI77509.1| truncated internalin A [Listeria monocytogenes]
gi|298359916|gb|ADI77537.1| truncated internalin A [Listeria monocytogenes]
gi|298359928|gb|ADI77543.1| truncated internalin A [Listeria monocytogenes]
gi|298359936|gb|ADI77547.1| truncated internalin A [Listeria monocytogenes]
gi|298359962|gb|ADI77560.1| truncated internalin A [Listeria monocytogenes]
gi|298359996|gb|ADI77577.1| truncated internalin A [Listeria monocytogenes]
gi|298360016|gb|ADI77587.1| truncated internalin A [Listeria monocytogenes]
gi|298360018|gb|ADI77588.1| truncated internalin A [Listeria monocytogenes]
gi|298360022|gb|ADI77590.1| truncated internalin A [Listeria monocytogenes]
gi|298360024|gb|ADI77591.1| truncated internalin A [Listeria monocytogenes]
gi|298360046|gb|ADI77602.1| truncated internalin A [Listeria monocytogenes]
gi|298360048|gb|ADI77603.1| truncated internalin A [Listeria monocytogenes]
gi|298360058|gb|ADI77608.1| truncated internalin A [Listeria monocytogenes]
gi|298360062|gb|ADI77610.1| truncated internalin A [Listeria monocytogenes]
gi|298360088|gb|ADI77623.1| truncated internalin A [Listeria monocytogenes]
gi|298360120|gb|ADI77639.1| truncated internalin A [Listeria monocytogenes]
gi|298360152|gb|ADI77655.1| truncated internalin A [Listeria monocytogenes]
gi|298360168|gb|ADI77663.1| truncated internalin A [Listeria monocytogenes]
gi|298360204|gb|ADI77681.1| truncated internalin A [Listeria monocytogenes]
gi|298360210|gb|ADI77684.1| truncated internalin A [Listeria monocytogenes]
gi|298360224|gb|ADI77691.1| truncated internalin A [Listeria monocytogenes]
gi|298360248|gb|ADI77703.1| truncated internalin A [Listeria monocytogenes]
gi|298360250|gb|ADI77704.1| truncated internalin A [Listeria monocytogenes]
gi|298360272|gb|ADI77715.1| truncated internalin A [Listeria monocytogenes]
gi|298360308|gb|ADI77733.1| truncated internalin A [Listeria monocytogenes]
gi|298360340|gb|ADI77749.1| truncated internalin A [Listeria monocytogenes]
gi|298360382|gb|ADI77770.1| truncated internalin A [Listeria monocytogenes]
gi|298360392|gb|ADI77775.1| truncated internalin A [Listeria monocytogenes]
gi|298360408|gb|ADI77783.1| truncated internalin A [Listeria monocytogenes]
gi|298360418|gb|ADI77788.1| truncated internalin A [Listeria monocytogenes]
gi|298360430|gb|ADI77794.1| truncated internalin A [Listeria monocytogenes]
gi|298360438|gb|ADI77798.1| truncated internalin A [Listeria monocytogenes]
gi|298360444|gb|ADI77801.1| truncated internalin A [Listeria monocytogenes]
gi|298360446|gb|ADI77802.1| truncated internalin A [Listeria monocytogenes]
gi|298360476|gb|ADI77817.1| truncated internalin A [Listeria monocytogenes]
gi|298360482|gb|ADI77820.1| truncated internalin A [Listeria monocytogenes]
gi|298360484|gb|ADI77821.1| truncated internalin A [Listeria monocytogenes]
gi|298360486|gb|ADI77822.1| truncated internalin A [Listeria monocytogenes]
gi|298360490|gb|ADI77824.1| truncated internalin A [Listeria monocytogenes]
gi|298360512|gb|ADI77835.1| truncated internalin A [Listeria monocytogenes]
gi|298360526|gb|ADI77842.1| truncated internalin A [Listeria monocytogenes]
gi|298360534|gb|ADI77846.1| truncated internalin A [Listeria monocytogenes]
gi|298360574|gb|ADI77866.1| truncated internalin A [Listeria monocytogenes]
gi|298360584|gb|ADI77871.1| truncated internalin A [Listeria monocytogenes]
gi|298360618|gb|ADI77888.1| truncated internalin A [Listeria monocytogenes]
gi|298360622|gb|ADI77890.1| truncated internalin A [Listeria monocytogenes]
gi|298360626|gb|ADI77892.1| truncated internalin A [Listeria monocytogenes]
gi|298360628|gb|ADI77893.1| truncated internalin A [Listeria monocytogenes]
gi|298360646|gb|ADI77902.1| truncated internalin A [Listeria monocytogenes]
gi|298360650|gb|ADI77904.1| truncated internalin A [Listeria monocytogenes]
gi|298360664|gb|ADI77911.1| truncated internalin A [Listeria monocytogenes]
gi|298360686|gb|ADI77922.1| truncated internalin A [Listeria monocytogenes]
gi|298360702|gb|ADI77930.1| truncated internalin A [Listeria monocytogenes]
gi|298360718|gb|ADI77938.1| truncated internalin A [Listeria monocytogenes]
gi|443428870|gb|AGC92234.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|85679218|gb|ABC72025.1| InlA [Listeria monocytogenes]
gi|85679232|gb|ABC72032.1| InlA [Listeria monocytogenes]
Length = 794
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 89 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 144
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 145 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 196
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 197 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 252
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 253 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 307
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 -----NISPLAGLTALT 319
>gi|419761284|ref|ZP_14287540.1| internalin-A [Thermosipho africanus H17ap60334]
gi|407513590|gb|EKF48487.1| internalin-A [Thermosipho africanus H17ap60334]
Length = 598
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 148/302 (49%), Gaps = 37/302 (12%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-S 195
D+ + T ++ NL+ ++ E+L I+ IT DM L++L +S S V D S
Sbjct: 11 DINKETVVNFNDSNLEEAVR-EALKIEEDKDITVQDM------WELENLSLSFSSVRDLS 63
Query: 196 GIAY---LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSA 252
G+ Y L+ L +S+ S + L L L KL L+L GC + L
Sbjct: 64 GLEYAVNLESLDLSN------SEVPDLSPL----AKLPKLVKLDLSGCGIEDLS--LLPN 111
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
L +L L L+ ++SD +K L++L+L N I+D + LK L NLE LNL
Sbjct: 112 LPNLISLRLSGNEISD--ISPLTKFSKLRMLDLSSNIISD--ISPLKDLPNLEELNLSVN 167
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
I D + L+ L LK L+LS ++ S + L+ LTNLE + LS+ ISD S LA
Sbjct: 168 KISD--ITPLSNLTKLKRLDLSYNRI--SDISSLTNLTNLEELVLSYNEISDIS--PLAN 221
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432
L +L L+L +I+D ++ L LT L LDL I+D + L N +LR L +
Sbjct: 222 LPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEISD--ISLLFNLTSLRELYVYPK 277
Query: 433 GL 434
Sbjct: 278 DF 279
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 131/533 (24%), Positives = 215/533 (40%), Gaps = 129/533 (24%)
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
I ++D L++L +F GLE+ NL SL + + A L LV
Sbjct: 41 ITVQDMWELENLSLSFSSVRDLSGLEYA---VNLESLDLSNS---EVPDLSPLAKLPKLV 94
Query: 135 KLDLERC----------------TRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLS 177
KLDL C R+ G + ++ L K L + + SD+ PL
Sbjct: 95 KLDLSGCGIEDLSLLPNLPNLISLRLSGNEISDISPLTKFSKLRMLDLSSNIISDISPLK 154
Query: 178 GLTNLKSLQISCSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
L NL+ L +S +K++D S + LK L +S + S I L LT+L++L
Sbjct: 155 DLPNLEELNLSVNKISDITPLSNLTKLKRLDLS---YNRISDISSL----TNLTNLEELV 207
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD- 292
L E ++ L+ L +L L+L+ ++SD + +L++L+L NEI+D
Sbjct: 208 LSYNEISDISP-----LANLPNLAGLDLSNNEISD--ISPLKDLTNLELLDLAENEISDI 260
Query: 293 ----------ECLVHLKGL-------------------------TNLESLNLDS------ 311
E V+ K E ++LD+
Sbjct: 261 SLLFNLTSLRELYVYPKDFKMKMIMFIEKYEDVDEDIDYEDIDEDTFEDIDLDNDEYIDV 320
Query: 312 ------CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
I +E +VN NL+ ++ + + LE+++LSF+
Sbjct: 321 DIDEYIEDIDEETVVNFND-SNLEEAVREALKIEEDEDITVQDMWELENLSLSFS----- 374
Query: 366 SLRKLAGLS---SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD---------- 412
S+R L+GL +L+SL+L ++ D L+ L L L LDL G I D
Sbjct: 375 SVRDLSGLEYAVNLESLDLSNSEVPD--LSPLAKLPKLVKLDLSGCGIEDLSLLPNLPNL 432
Query: 413 ----------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
S + L F LR L++ ++D + + L+ L L+L N ++D
Sbjct: 433 ISLRLSGNEISDISPLTKFSKLRMLDLSSNIISD--ISPLAKLTKLRFLDLYAN-EVSD- 488
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ ++ LT L L+ S +++ + L L LR L L+ K+ NDI L
Sbjct: 489 -VSPLAKLTKLRVLDFSQNKVN--DISPLVKLTKLRVLELQYNKI--NDISPL 536
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 55/256 (21%)
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
F +I E +V+ +NLE ++ I ++ + + + L+ L LS S +R L
Sbjct: 9 FEDINKETVVNFND-SNLEEAVREALKIEEDKDITVQDMWELENLSLS-----FSSVRDL 62
Query: 347 SGL---TNLESINLSFTGISD-GSLRKLAGLSSLK-------------------SLNLDA 383
SGL NLES++LS + + D L KL L L SL L
Sbjct: 63 SGLEYAVNLESLDLSNSEVPDLSPLAKLPKLVKLDLSGCGIEDLSLLPNLPNLISLRLSG 122
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------ 437
+I+D ++ LT + L LDL I+D + L++ NL L + ++D
Sbjct: 123 NEISD--ISPLTKFSKLRMLDLSSNIISD--ISPLKDLPNLEELNLSVNKISDITPLSNL 178
Query: 438 --------GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS---LNVSNSRITSA 486
I D+SSLT L + L+ + IS L L + L++SN+ I+
Sbjct: 179 TKLKRLDLSYNRISDISSLTNLTNLEELVLSYNEISDISPLANLPNLAGLDLSNNEIS-- 236
Query: 487 GLRHLKPLKNLRSLTL 502
+ PLK+L +L L
Sbjct: 237 ---DISPLKDLTNLEL 249
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L L NEI+D + L + L L+L S I D + L L L+ L+L +V S
Sbjct: 435 LRLSGNEISD--ISPLTKFSKLRMLDLSSNIISD--ISPLAKLTKLRFLDLYANEV--SD 488
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ L+ LT L ++ S ++D S L L+ L+ L L +I D ++ L++LT L
Sbjct: 489 VSPLAKLTKLRVLDFSQNKVNDIS--PLVKLTKLRVLELQYNKIND--ISPLSNLTNLIG 544
Query: 403 LDLFGARITDSGAAY 417
LDL G +I+D +
Sbjct: 545 LDLTGNKISDISPLF 559
>gi|290989752|ref|XP_002677501.1| predicted protein [Naegleria gruberi]
gi|284091109|gb|EFC44757.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 14/286 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
+K L L NL L I+ +++ D+G + G+ + + + + I H+ + L KL
Sbjct: 48 IKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVSSNDITTKGAKHI--SKLNKL 105
Query: 233 TLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L +E + A + ++ L L L++ L G + S++ L L++ N +
Sbjct: 106 VSLKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLL 165
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+E ++ L NL L ++S I EG ++ L L L +S + G + +S L N
Sbjct: 166 NEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNN 225
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L +++S ++D + ++ L LK+L +D QI+D G+ ++ L LT L++ I+
Sbjct: 226 LTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNLIS 285
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
G + I G + D G + I DL++L L + QN
Sbjct: 286 AEGLS-----------SISGNEIGDEGAEIIGDLTNLKELTVDQNS 320
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 21/287 (7%)
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
++G+K L+NL +L + G ++ G+ +L L++ N IT K +S L
Sbjct: 45 SKGIKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVS-SNDITTKGAKHISKLN 103
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF----LTSLQKLTLLN 236
L SL++ + + GI Y I+ + L + I L V ++ L +LT L+
Sbjct: 104 KLVSLKMEENMIDAQGIKY-----ITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLS 158
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
+E + +S L +L L +N Q+ +G + K+ L L + N + DE
Sbjct: 159 IENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAK 218
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
+ L NL L++ + DEG+ ++ L LK LE+ + Q+ G+ + GL L +N
Sbjct: 219 LISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELN 278
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ + IS L ++G +I D G + LT L L
Sbjct: 279 IDYNLISAEGLSSISG-----------NEIGDEGAEIIGDLTNLKEL 314
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 152/345 (44%), Gaps = 35/345 (10%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRL 219
L++K + DS +K + L+ LK+L I+ + S + KG+
Sbjct: 7 LDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRS--RFSKGIK--------------- 49
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
+L +L L+ L + + + +S + L L+++ ++ G + SK+
Sbjct: 50 -----YLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNK 104
Query: 280 LKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L L + N I + + ++ L L L++ S +G G ++ L L L + + +
Sbjct: 105 LVSLKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNL 164
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
+ G ++S L NL + ++ I + + L L +L + + D G ++ L
Sbjct: 165 LNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELN 224
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
LT LD+ +TD G + K L++LEI ++D G++ I L+ LT LN+ N
Sbjct: 225 NLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYN-- 282
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
LIS GL S +S + I G + L NL+ LT++
Sbjct: 283 -------LISA-EGLSS--ISGNEIGDEGAEIIGDLTNLKELTVD 317
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 114/274 (41%), Gaps = 41/274 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNN 117
L +D+S +D+T G H+ + L SL + I G++++ L+ LT L N+
Sbjct: 81 LTKLDVSSNDITTKGAKHISKLNKLVSLKMEENM-IDAQGIKYITDQLNQLTELDIGSND 139
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ G KA + L L L +E ++ G + L+ L L I N I K +
Sbjct: 140 -LGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCIN-SNQIDSEGAKDII 197
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
L L +L IS + + D G ++ L LT+L++
Sbjct: 198 KLKQLTTLFISGNSLLDEGAK--------------------------LISELNNLTVLDI 231
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+T ++ +S L L L ++ Q+SD+G E + L LN+ +N I+ E L
Sbjct: 232 SDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNLISAEGLSS 291
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ G IGDEG + L NLK L
Sbjct: 292 ISG-----------NEIGDEGAEIIGDLTNLKEL 314
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 400 LTHLDLFGARI-TDSGAAYLRNFKNLRSLEICGGG----LTDAGVKHIKDLSSLTLLNLS 454
+T LD+ G I DS + L++L+I G+K++ +L +L+ L ++
Sbjct: 4 VTWLDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYIN 63
Query: 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 514
N + D E ISG+ L L+VS++ IT+ G +H+ L L SL +E + A IK
Sbjct: 64 SN-EIGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKY 122
Query: 515 LQSR 518
+ +
Sbjct: 123 ITDQ 126
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +D+S +++TD G+ + L++L+ + QISD G+E + GL+ LT L+
Sbjct: 221 SELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDEN-QISDEGIESICGLNQLTELNI 279
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
N I+A+G+ + +G N + + I G L NLK L
Sbjct: 280 DY-NLISAEGLSSISG--NEIG---DEGAEIIGDLTNLKEL 314
>gi|22347544|gb|AAM95917.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 141
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 142 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 197
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 198 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 252
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -----NISPLAGLTALT 264
>gi|217965469|ref|YP_002351147.1| internalin-A [Listeria monocytogenes HCC23]
gi|386007166|ref|YP_005925444.1| internalin A [Listeria monocytogenes L99]
gi|386025755|ref|YP_005946531.1| internalin A [Listeria monocytogenes M7]
gi|167861970|gb|ACA05684.1| InlA [Listeria monocytogenes]
gi|167861982|gb|ACA05690.1| InlA [Listeria monocytogenes]
gi|217334739|gb|ACK40533.1| internalin-A [Listeria monocytogenes HCC23]
gi|307569976|emb|CAR83155.1| internalin A [Listeria monocytogenes L99]
gi|336022336|gb|AEH91473.1| internalin A [Listeria monocytogenes M7]
Length = 800
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLASLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|325108768|ref|YP_004269836.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
5305]
gi|324969036|gb|ADY59814.1| hypothetical protein Plabr_2212 [Planctomyces brasiliensis DSM
5305]
Length = 268
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
+L EI+D+ + + LT + +NL I D GL +L+GL +L L L T + +
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
GL+HL+GL LE +NL T ISD L++LA L LK L + Q+T G+ L
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKL 161
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389
L++ ++ ++ +S LT + +NL T I+D L L+GL SL L+L+ ITD
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449
GL LT L L +L+L+ +I+D+G L K L+ L + +T GVK +++
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE----- 163
Query: 450 LLNLSQNCNLTDKTLELISGLT 471
Q LT +ISGL+
Sbjct: 164 -----QRPELT-----IISGLS 175
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%)
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+ +L I D+ + ++ L + + L T + +GL HLSGL +L ++L TGI+D
Sbjct: 49 TFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDA 108
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
L+ L GL+ L+ LNL +I+D GL L +L GL L ++ ++T G L+
Sbjct: 109 GLKHLTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 33/145 (22%)
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+I+D + ++ LT + ++L G ITD+G A+L +L L + G+TDAG+KH+
Sbjct: 56 EISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHL-- 113
Query: 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+GL L LN+ +++I+ AGL+ L LK L+ L +
Sbjct: 114 -----------------------TGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQ 150
Query: 505 CKVTANDIKRLQSRDLPNLVSFRPE 529
+VT + +K+LQ + RPE
Sbjct: 151 TQVTWDGVKKLQEQ--------RPE 167
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 336 TQVGSSGLRHLSGLTNLESINLSFT----GISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
++V ++G R + N + + ++F ISD S++ ++ L+ + +NL ITD GL
Sbjct: 27 SKVEANGGRVMKLAQNDDRLEVTFHLAEGEISDKSIQPVSELTQVYLVNLRGTAITDAGL 86
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
A L+ L L+ L L G+TDAG+KH+ L+ L L
Sbjct: 87 AHLSGLDSLSRLHLEKT------------------------GITDAGLKHLTGLNKLEYL 122
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492
NL + ++D L+ ++ L GL L V +++T G++ L+
Sbjct: 123 NLY-DTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQ 162
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 72/169 (42%), Gaps = 30/169 (17%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLSIS----SVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
L + Q + SKV +G +K L+ + V F L I + ++ L ++ L+NL
Sbjct: 19 LPAQQAAVSKVEANGGRVMK-LAQNDDRLEVTFHLAEGEISDKSIQP-VSELTQVYLVNL 76
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
G +T A L LS L SL L+L + ITD L H
Sbjct: 77 RGTAITDAGLAHLSGLDSLSRLHLEKTG------------------------ITDAGLKH 112
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
L GL LE LNL I D GL L L LK L + TQV G++ L
Sbjct: 113 LTGLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKL 161
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 12/154 (7%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSN 107
++ +Q +++ V+ +G V +K N L+ F + +ISD ++ + L+
Sbjct: 18 LLPAQQAAVSKVEANGGRV-------MKLAQNDDRLEVTFHLAEGEISDKSIQPVSELTQ 70
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
+ ++ R AIT G+ +GL +L +L LE+ GL +L GL KLE LN+ +
Sbjct: 71 VYLVNLR-GTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKHLTGLNKLEYLNL-YDTK 128
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
I+D+ ++ L+ L LK L + ++VT G+ L+
Sbjct: 129 ISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQ 162
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227
I+D ++P+S LT + + + + +TD+G+A+L GL S + + + I H LT
Sbjct: 57 ISDKSIQPVSELTQVYLVNLRGTAITDAGLAHLSGLDSLSRLHLEKTGITDAGLKH--LT 114
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
L KL LNL ++ A L L+AL L L + + Q++ DG +K +
Sbjct: 115 GLNKLEYLNLYDTKISDAGLQQLAALKGLKKLYVWQTQVTWDGVKKLQE 163
>gi|404406915|ref|YP_006689630.1| internalin A [Listeria monocytogenes SLCC2376]
gi|130774829|gb|ABO32427.1| InlA [Listeria monocytogenes]
gi|167861972|gb|ACA05685.1| InlA [Listeria monocytogenes]
gi|194326147|emb|CAQ77232.1| internalin A [Listeria monocytogenes]
gi|404241064|emb|CBY62464.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2376]
Length = 800
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|390362171|ref|XP_003730087.1| PREDICTED: F-box/LRR-repeat protein 14-like [Strongylocentrotus
purpuratus]
Length = 478
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 161/354 (45%), Gaps = 78/354 (22%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+ G+ N++SL +S C +TD G++ H F + LT+
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLS------------------------HAFSKEIPTLTV 205
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNL-GFNEITD 292
LNL C Q++D + + + L+VL+L G + IT+
Sbjct: 206 LNLSLCK-----------------------QITDTSLWRIEQYLKQLEVLDLAGCSNITN 242
Query: 293 E-CLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG--------------LCNLKCLELSDT 336
LV +GL L+ LNL SC I D G+ L G L C +LSDT
Sbjct: 243 TGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLELLVLQDCQKLSDT 302
Query: 337 QVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 394
+ S GL L S+NLSF GI+D + L+ + SL+ LNL + I+D GLA L
Sbjct: 303 ALMSIA----KGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLRSCDNISDIGLAHL 358
Query: 395 TSLTG-LTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTL 450
G LD F +I D+ +++ + NL+++ + +TD GV + ++ L ++T
Sbjct: 359 AEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGVGRLVRSLHNMTT 418
Query: 451 LNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
LN+ Q +TDK L LI+ L L +++ + IT+ GL + L L L L
Sbjct: 419 LNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLPCLTVLNL 472
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 155/328 (47%), Gaps = 48/328 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGM-KAFAGLINL 133
++ N+QSL+ + C ++D GL H + + LT L+ IT + + L L
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQL 229
Query: 134 VKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-----NLKSLQ 186
LDL C+ I G LV +GL KL+ LN++ C I+D + L+G++ + L+
Sbjct: 230 EVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLE 289
Query: 187 I----SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG-CP 241
+ C K++D+ + +SI+ L KL LNL C
Sbjct: 290 LLVLQDCQKLSDTAL-----MSIAK--------------------GLHKLRSLNLSFCCG 324
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKI-GSLKVLNLGF-NEITDECLVHL 298
+T + SLS + SL LNL C +SD G ++ G L+ F ++I D L H+
Sbjct: 325 ITDTGMISLSRMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHI 384
Query: 299 -KGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLES 354
+G+ NL++++L SC I DEG+ L L N+ L + +V GL ++ L L+
Sbjct: 385 SQGMPNLKNVSLSSCHITDEGVGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKC 444
Query: 355 INL-SFTGISDGSLRKLAGLSSLKSLNL 381
I+L T I+ L ++ L L LNL
Sbjct: 445 IDLYGCTMITTVGLERIMQLPCLTVLNL 472
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 131/259 (50%), Gaps = 29/259 (11%)
Query: 62 VDLSG-SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G S++T++GL+ + + L+ L+ C ISD G+ +L G+S
Sbjct: 232 LDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVS------------- 278
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
++A G +L L L+ C ++ L+++ KGL KL SLN+ +C ITD+ M LS
Sbjct: 279 ----VEAARGTRDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLS 334
Query: 178 GLTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
+ +L+ L + SC ++D G+A+L G +++ C I H+ + L
Sbjct: 335 RMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHIS-QGMPNLKN 393
Query: 235 LNLEGCPVTAACLDSL-SALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL-GFNEI 290
++L C +T + L +L ++ LN+ +C +++D G ++ + LK ++L G I
Sbjct: 394 VSLSSCHITDEGVGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMI 453
Query: 291 TDECLVHLKGLTNLESLNL 309
T L + L L LNL
Sbjct: 454 TTVGLERIMQLPCLTVLNL 472
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 35/257 (13%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSG 348
++G+ N++SLNL C + D GL + LT L C +++DT + R
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSL----WRIEQY 225
Query: 349 LTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GL 400
L LE ++L+ + I++ L +A GL LK LNL + R I+D G+ L ++ G
Sbjct: 226 LKQLEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGT 285
Query: 401 THLDLF----GARITDSG-AAYLRNFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLN 452
L+L +++D+ + + LRSL + CG +TD G+ + + SL LN
Sbjct: 286 RDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCG--ITDTGMISLSRMQSLRELN 343
Query: 453 LSQNCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 509
L N++D L ++ G +L+ S +I A L H+ + + NL++++L SC +T
Sbjct: 344 LRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITD 403
Query: 510 NDIKRLQSRDLPNLVSF 526
+ RL R L N+ +
Sbjct: 404 EGVGRL-VRSLHNMTTL 419
>gi|85679220|gb|ABC72026.1| InlA [Listeria monocytogenes]
Length = 794
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGANQISN--ISPLAGLAALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 -NISPLAGLAALT 319
>gi|386052609|ref|YP_005970167.1| internalin-I [Listeria monocytogenes Finland 1998]
gi|346645260|gb|AEO37885.1| internalin-I [Listeria monocytogenes Finland 1998]
Length = 1778
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 89/471 (18%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI---SCSKVTDSGIAYLKGLS 204
L+ LN+ + D S + L L N+K+L++ + + + + YL+
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 205 ISSVIFI-----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
++++ + L ++ I+ L +L T L L + A+ L LG + L
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKSLATLNGATKLQL----IDASNCTDLETLGDISGL 343
Query: 260 N-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ L QLS GC K +I S LK L NL ++ DSC I D G
Sbjct: 344 SELEMIQLS--GCSKLKEITS------------------LKNLPNLVNITADSCAIEDLG 383
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLK 377
+N L L+ L LSD + L +++ +T+L + L+ G S+ L L L+
Sbjct: 384 TLN--NLPKLQTLVLSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLE 437
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L+L QIT ++ +T L L++LD+ +T G L+ L L + L+D
Sbjct: 438 KLDLKENQITS--ISEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD- 492
Query: 438 GVKHIKDLSSLTLLNLSQNC-------------------NLTDKTLELISGLTGLVSLNV 478
V + + SL +N+S N N + + +I + L ++
Sbjct: 493 -VSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDA 551
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+ IT+ G L L+SL + S ++T+ + DLP+L +F +
Sbjct: 552 SNNLITNIGT--FDNLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
Score = 53.1 bits (126), Expect = 3e-04, Method: Composition-based stats.
Identities = 126/484 (26%), Positives = 214/484 (44%), Gaps = 68/484 (14%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA 128
SG LK+ ++L++L I +E L L+NL +L N +T + A
Sbjct: 352 SGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLT--NITAIT 409
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L+ C G L L KLE L++K N IT + ++ L L L +S
Sbjct: 410 DLPQLKTLTLDGCGITSIG--TLDNLPKLEKLDLKE-NQITS--ISEITDLPRLSYLDVS 464
Query: 189 CSKVTDSG----IAYLKGLSISSVIFILCSMIIRLFCLHVF------LTSLQKLTLLNLE 238
+ +T G + L+ L++SS S + L+ + ++ K+T L
Sbjct: 465 VNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMT--ELP 522
Query: 239 GCPVTAACLDSLSALGSLFYL-NLNRCQLSDD---GCEKFSKIGSLKVLNLGFNEITDEC 294
A +S+S + + + NL + S++ F + L+ L++ N IT
Sbjct: 523 SLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTS 582
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++H L +LE+ N + I + G + L +L + LS ++ S L + L NLE+
Sbjct: 583 VIH--DLPSLETFNAQTNLITNIG--TMDNLPDLTYVNLSFNRIPS--LAPIGDLPNLET 636
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARI 410
+ +S SL + G+ L+ L+L + TG L++L+ LT LT L+L
Sbjct: 637 LIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVY 696
Query: 411 TD--SGAAYLRN--FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
D SG + L + NL S I+D+S+L+ L Q L + +E
Sbjct: 697 IDDISGLSTLSRLIYLNLDS-------------NKIEDISALSNLTNLQELTLENNKIEN 743
Query: 467 ISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
IS L+ L +LN VS ++I + P+ N+ + VTA++ Q+ LP +
Sbjct: 744 ISALSDLENLNKLVVSKNKIID-----ISPVANMVN---RGAIVTASN----QTYTLPTV 791
Query: 524 VSFR 527
+S++
Sbjct: 792 LSYQ 795
Score = 39.3 bits (90), Expect = 5.3, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
S + L L NL S+NLS ISD L L L +L SLNL + + T L+ + L L
Sbjct: 173 SNIEGLQYLENLTSLNLSENNISD--LAPLKDLVNLVSLNLSSNR-TLVNLSGVEDLVNL 229
Query: 401 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 446
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 230 QELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLT 289
Query: 447 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
+LT L NL N + K+L ++G T L ++ SN L + L L
Sbjct: 290 NLTSLAKLPKLKNLYIKGNASLKSLATLNGATKLQLIDASNCTDLET-LGDISGLSELEM 348
Query: 500 LTLESCKVTANDIKRLQS-RDLPNLVS 525
+ L C + +K + S ++LPNLV+
Sbjct: 349 IQLSGC----SKLKEITSLKNLPNLVN 371
>gi|254829631|ref|ZP_05234318.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
N3-165]
gi|258602049|gb|EEW15374.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
N3-165]
Length = 1778
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 89/471 (18%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI---SCSKVTDSGIAYLKGLS 204
L+ LN+ + D S + L L N+K+L++ + + + + YL+
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 205 ISSVIFI-----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
++++ + L ++ I+ L +L T L L + A+ L LG + L
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKSLATLNGATKLQL----IDASNCTDLETLGDISGL 343
Query: 260 N-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ L QLS GC K +I S LK L NL ++ DSC I D G
Sbjct: 344 SELEMIQLS--GCSKLKEITS------------------LKNLPNLVNITADSCAIEDLG 383
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLK 377
+N L L+ L LSD + L +++ +T+L + L+ G S+ L L L+
Sbjct: 384 TLN--NLPKLQTLVLSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLE 437
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L+L QIT ++ +T L L++LD+ +T G L+ L L + L+D
Sbjct: 438 KLDLKENQITS--ISEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD- 492
Query: 438 GVKHIKDLSSLTLLNLSQNC-------------------NLTDKTLELISGLTGLVSLNV 478
V + + SL +N+S N N + + +I + L ++
Sbjct: 493 -VSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDA 551
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+ IT+ G L L+SL + S ++T+ + DLP+L +F +
Sbjct: 552 SNNLITNIGT--FDNLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 126/484 (26%), Positives = 214/484 (44%), Gaps = 68/484 (14%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA 128
SG LK+ ++L++L I +E L L+NL +L N +T + A
Sbjct: 352 SGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLT--NITAIT 409
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L+ C G L L KLE L++K N IT + ++ L L L +S
Sbjct: 410 DLPQLKTLTLDGCGITSIG--TLDNLPKLEKLDLKE-NQITS--ISEITDLPRLSYLDVS 464
Query: 189 CSKVTDSG----IAYLKGLSISSVIFILCSMIIRLFCLHVF------LTSLQKLTLLNLE 238
+ +T G + L+ L++SS S + L+ + ++ K+T L
Sbjct: 465 VNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMT--ELP 522
Query: 239 GCPVTAACLDSLSALGSLFYL-NLNRCQLSDD---GCEKFSKIGSLKVLNLGFNEITDEC 294
A +S+S + + + NL + S++ F + L+ L++ N IT
Sbjct: 523 SLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTS 582
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++H L +LE+ N + I + G + L +L + LS ++ S L + L NLE+
Sbjct: 583 VIH--DLPSLETFNAQTNLIANIG--TMDNLPDLTYVNLSFNRIPS--LAPIGDLPNLET 636
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARI 410
+ +S SL + G+ L+ L+L + TG L++L+ LT LT L+L
Sbjct: 637 LIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVY 696
Query: 411 TD--SGAAYLRN--FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
D SG + L + NL S I+D+S+L+ L Q L + +E
Sbjct: 697 IDDISGLSTLSRLIYLNLDS-------------NKIEDISALSNLTNLQELTLENNKIEN 743
Query: 467 ISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
IS L+ L +LN VS ++I + P+ N+ + VTA++ Q+ LP +
Sbjct: 744 ISALSDLENLNKLVVSKNKIID-----ISPVANMVN---RGAIVTASN----QTYTLPTV 791
Query: 524 VSFR 527
+S++
Sbjct: 792 LSYQ 795
Score = 39.3 bits (90), Expect = 5.3, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
S + L L NL S+NLS ISD L L L +L SLNL + + T L+ + L L
Sbjct: 173 SNIEGLQYLENLTSLNLSENNISD--LAPLKDLVNLVSLNLSSNR-TLVNLSGVEDLVNL 229
Query: 401 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 446
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 230 QELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLT 289
Query: 447 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
+LT L NL N + K+L ++G T L ++ SN L + L L
Sbjct: 290 NLTSLAKLPKLKNLYIKGNASLKSLATLNGATKLQLIDASNCTDLET-LGDISGLSELEM 348
Query: 500 LTLESCKVTANDIKRLQS-RDLPNLVS 525
+ L C + +K + S ++LPNLV+
Sbjct: 349 IQLSGC----SKLKEITSLKNLPNLVN 371
>gi|290992226|ref|XP_002678735.1| predicted protein [Naegleria gruberi]
gi|284092349|gb|EFC45991.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 151/357 (42%), Gaps = 34/357 (9%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS---VIFILCSMIIRL 219
K+ NC+TD +K N K + + + + LK L ISS V + +I
Sbjct: 56 KFKNCVTD--LKLTHTADNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVI--- 110
Query: 220 FCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
L++LT L++ + A + + L YLN+ L+ +G S++ +
Sbjct: 111 -------GQLKQLTKLDISFNTIGAEGAKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTN 163
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L LN+ FNE G EG L L L L++ Q+G
Sbjct: 164 LTYLNVRFNE----------------DFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQIG 207
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
+ G + + + +L + + + +R L+ L +L+ L+++ I D G+ + L
Sbjct: 208 NDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICKLKQ 267
Query: 400 LTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
LTHLDL+ IT G + + + L I + D G K + ++ LT L +
Sbjct: 268 LTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRD-GTKFLGEMKQLTTLEADE-IE 325
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
L + L+ + GL L L+V+N+ + G + + +K L L + + N ++ L
Sbjct: 326 LDAEGLKYLVGLKKLNFLSVNNNLFGAEGCKVVSEMKQLEELCMNDNNIGDNGVQYL 382
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 150/362 (41%), Gaps = 43/362 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL ++ + G K L L KLD+ T G + + +L LNI +
Sbjct: 88 LEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEGAKFIGEMQQLTYLNI-Y 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTD--------SGIAYLKGLSISSVIFILCSMI 216
N +T ++ +S LTNL L + ++ G YL+ L + + I + I
Sbjct: 147 GNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQI 206
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
F+ +Q LT L + + A + LS L +L L++N + D+G K
Sbjct: 207 GNDGA--KFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICK 264
Query: 277 IGSLKVLNLGFNEITDE---------------------------CLVHLKGLTNLESLNL 309
+ L L+L EIT E L +K LT LE+
Sbjct: 265 LKQLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGTKFLGEMKQLTTLEA--- 321
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
D + EGL L GL L L +++ G+ G + +S + LE + ++ I D ++
Sbjct: 322 DEIELDAEGLKYLVGLKKLNFLSVNNNLFGAEGCKVVSEMKQLEELCMNDNNIGDNGVQY 381
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427
L L SL SL L I G+ L S L LT LD+ G +IT S + N K L L
Sbjct: 382 LCELKSLTSLCLWNNNIGIEGVKLLCSGNLNNLTTLDIRGNQITKSDSHLFENMKQLTEL 441
Query: 428 EI 429
I
Sbjct: 442 LI 443
>gi|112959444|gb|ABI27249.1| truncated internalin A [Listeria monocytogenes]
gi|112959490|gb|ABI27272.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTGLKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS 245
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -----NISPLAGLTALT 257
>gi|449463292|ref|XP_004149368.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus]
Length = 663
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 128/451 (28%), Positives = 209/451 (46%), Gaps = 59/451 (13%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ LCL + D + +IA++ L S+DLS +T+ L + +L+ L C
Sbjct: 187 LKLLCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECH 246
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
I D GLE L+ SL F L+L RC I H GL +L
Sbjct: 247 GIDDEGLEALKRNCKRNSLKF----------------------LNLSRCPSISHSGLSSL 284
Query: 152 -KGLMKLESLNIKWCNCIT-DSDM-KPLSGLTNLKSLQISCSKVTDSGI-------AYLK 201
G L+ LN+ + + ++ +DM K L + L+S+++ C +T SG+ A LK
Sbjct: 285 IIGSENLQKLNLSYGSSVSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKTIANWRASLK 344
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL-SALGSLFYL 259
LS+S C+ + CL + + ++L L++ C +T ++S+ S+ L L
Sbjct: 345 ELSLSK-----CAGVTD-ECLSILVQKHKQLRKLDITCCRKITYGSINSITSSCSFLVSL 398
Query: 260 NLNRCQLSDDGCEKFSKIGS----LKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GI 314
+ C L E + IG L+ L+L NEI +E L + + L L L C I
Sbjct: 399 KMESCSLVPR--EAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCSRLSVLKLGICLNI 456
Query: 315 GDEGLVNLTGLC-NLKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKL 370
D+GL ++ C +K L+L T + G+ + G LE IN+++ I+D SL L
Sbjct: 457 NDDGLCHIASGCPKIKELDLYRSTGITDRGIAATAGGCPALEMINIAYNDKITDSSLISL 516
Query: 371 AGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNF-KNLRS 426
+ +LK+L + I+ GL+A+ LT LD+ + D G L F NL+
Sbjct: 517 SKCLNLKALEIRGCCCISSIGLSAIAMGCKQLTVLDIKKCVNVNDDGMLPLAQFSHNLKQ 576
Query: 427 LEICGGGLTDAG---VKHIKDLSSLTLLNLS 454
+ + +TD G + I L ++T+L+L+
Sbjct: 577 INLSYCSVTDVGLLSLASINCLRNMTILHLA 607
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 134/484 (27%), Positives = 217/484 (44%), Gaps = 56/484 (11%)
Query: 59 LLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRN 116
L+ ++LS G +TDS + L + NL+ L + C I+D G+ + G L L
Sbjct: 136 LVEINLSNGVALTDSVIKVLAEAKNLEKLWLSRCKSITDMGIGCVAVGCKKLKLLCLNWC 195
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
IT G+ A L LDL L + L LE L ++ C+ I D ++
Sbjct: 196 LHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGIDDEGLEA 255
Query: 176 LS---GLTNLKSLQIS-CSKVTDSGIAYLK---------GLSISSVIFILCSMIIRLFCL 222
L +LK L +S C ++ SG++ L LS S + I M CL
Sbjct: 256 LKRNCKRNSLKFLNLSRCPSISHSGLSSLIIGSENLQKLNLSYGSSVSITTDMA---KCL 312
Query: 223 HVFLTSLQKLTLLNLEGCPVTAACLDSLSAL-GSLFYLNLNRCQLSDDGC-----EKFSK 276
H F + LQ + L+ C +T + + +++ SL L+L++C D C +K +
Sbjct: 313 HNF-SGLQS---IKLDCCSLTTSGVKTIANWRASLKELSLSKCAGVTDECLSILVQKHKQ 368
Query: 277 IGSL------KVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLCN-L 328
+ L K+ N IT C + L SL ++SC + E V + C L
Sbjct: 369 LRKLDITCCRKITYGSINSITSSC-------SFLVSLKMESCSLVPREAYVLIGQRCPYL 421
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNL-DARQ 385
+ L+L+D ++ + GL+ +S + L + L I+D L +A G +K L+L +
Sbjct: 422 EELDLTDNEIDNEGLKSISKCSRLSVLKLGICLNINDDGLCHIASGCPKIKELDLYRSTG 481
Query: 386 ITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 440
ITD G+AA G L++ + +ITDS L NL++LEI G ++ G+
Sbjct: 482 ITDRGIAATAG--GCPALEMINIAYNDKITDSSLISLSKCLNLKALEIRGCCCISSIGLS 539
Query: 441 HIK-DLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498
I LT+L++ + N+ D L L L +N+S +T GL L + LR
Sbjct: 540 AIAMGCKQLTVLDIKKCVNVNDDGMLPLAQFSHNLKQINLSYCSVTDVGLLSLASINCLR 599
Query: 499 SLTL 502
++T+
Sbjct: 600 NMTI 603
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 167/393 (42%), Gaps = 64/393 (16%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRL---FCLH 223
+TDS +K L+ NL+ L +S C +TD GI + + C + L +CLH
Sbjct: 147 LTDSVIKVLAEAKNLEKLWLSRCKSITDMGIG---------CVAVGCKKLKLLCLNWCLH 197
Query: 224 V-------FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS 275
+ T ++L L+L P+T CL ++ L L L L C + D+G E
Sbjct: 198 ITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECHGIDDEGLEALK 257
Query: 276 ---KIGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLD---SCGIGDEGLVNLTGLCN 327
K SLK LNL I+ L L G NL+ LNL S I + L
Sbjct: 258 RNCKRNSLKFLNLSRCPSISHSGLSSLIIGSENLQKLNLSYGSSVSITTDMAKCLHNFSG 317
Query: 328 LKCLELSDTQVGSSGLRHLSGL-TNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA- 383
L+ ++L + +SG++ ++ +L+ ++LS G++D L L L+ L++
Sbjct: 318 LQSIKLDCCSLTTSGVKTIANWRASLKELSLSKCAGVTDECLSILVQKHKQLRKLDITCC 377
Query: 384 RQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGGLTDAGVK 440
R+IT + ++TS + L L + + A L + L L++ + + G+K
Sbjct: 378 RKITYGSINSITSSCSFLVSLKMESCSLVPREAYVLIGQRCPYLEELDLTDNEIDNEGLK 437
Query: 441 HIKDLSSLTLLNLSQNCNLTD-------------KTLELIS--------------GLTGL 473
I S L++L L N+ D K L+L G L
Sbjct: 438 SISKCSRLSVLKLGICLNINDDGLCHIASGCPKIKELDLYRSTGITDRGIAATAGGCPAL 497
Query: 474 VSLNVS-NSRITSAGLRHLKPLKNLRSLTLESC 505
+N++ N +IT + L L NL++L + C
Sbjct: 498 EMINIAYNDKITDSSLISLSKCLNLKALEIRGC 530
>gi|85679226|gb|ABC72029.1| InlA [Listeria monocytogenes]
Length = 791
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDSLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGTNQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 126/256 (49%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 89 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 144
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + +L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 145 GLTLFNNQITD--IDSLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 197
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 253
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGTNQIS- 307
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 ----NISPLAGLTALT 319
>gi|404412424|ref|YP_006698011.1| internalin I [Listeria monocytogenes SLCC7179]
gi|404238123|emb|CBY59524.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC7179]
Length = 1783
Score = 72.4 bits (176), Expect = 6e-10, Method: Composition-based stats.
Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 89/471 (18%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI---SCSKVTDSGIAYLKGLS 204
L+ LN+ + D S + L L N+K+L++ + + + + YL+
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 205 ISSVIFI-----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
++++ + L ++ I+ L +L T L L + A+ L LG + L
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKSLATLNGATKLQL----IDASNCTDLETLGDISGL 343
Query: 260 N-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ L QLS GC K +I S LK L NL ++ DSC I D G
Sbjct: 344 SELEMIQLS--GCSKLKEITS------------------LKNLPNLVNITADSCAIEDLG 383
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLK 377
+N L L+ L LSD + L +++ +T+L + L+ G S+ L L L+
Sbjct: 384 TLN--NLPKLQTLVLSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLE 437
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L+L QIT ++ +T L L++LD+ +T G L+ L L + L+D
Sbjct: 438 KLDLKENQITS--ISEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD- 492
Query: 438 GVKHIKDLSSLTLLNLSQNC-------------------NLTDKTLELISGLTGLVSLNV 478
V + + SL +N+S N N + + +I + L ++
Sbjct: 493 -VSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDA 551
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+ IT+ G L L+SL + S ++T+ + DLP+L +F +
Sbjct: 552 SNNLITNIGT--FDNLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
Score = 53.1 bits (126), Expect = 4e-04, Method: Composition-based stats.
Identities = 126/484 (26%), Positives = 214/484 (44%), Gaps = 68/484 (14%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA 128
SG LK+ ++L++L I +E L L+NL +L N +T + A
Sbjct: 352 SGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLT--NITAIT 409
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L+ C G L L KLE L++K N IT + ++ L L L +S
Sbjct: 410 DLPQLKTLTLDGCGITSIG--TLDNLPKLEKLDLKE-NQITS--ISEITDLPRLSYLDVS 464
Query: 189 CSKVTDSG----IAYLKGLSISSVIFILCSMIIRLFCLHVF------LTSLQKLTLLNLE 238
+ +T G + L+ L++SS S + L+ + ++ K+T L
Sbjct: 465 VNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMT--ELP 522
Query: 239 GCPVTAACLDSLSALGSLFYL-NLNRCQLSDD---GCEKFSKIGSLKVLNLGFNEITDEC 294
A +S+S + + + NL + S++ F + L+ L++ N IT
Sbjct: 523 SLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTS 582
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++H L +LE+ N + I + G + L +L + LS ++ S L + L NLE+
Sbjct: 583 VIH--DLPSLETFNAQTNLITNIG--TMDNLPDLTYVNLSFNRIPS--LAPIGDLPNLET 636
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARI 410
+ +S SL + G+ L+ L+L + TG L++L+ LT LT L+L
Sbjct: 637 LIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVY 696
Query: 411 TD--SGAAYLRN--FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
D SG + L + NL S I+D+S+L+ L Q L + +E
Sbjct: 697 IDDISGLSTLSRLIYLNLDS-------------NKIEDISALSNLTNLQELTLENNKIEN 743
Query: 467 ISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
IS L+ L +LN VS ++I + P+ N+ + VTA++ Q+ LP +
Sbjct: 744 ISALSDLENLNKLVVSKNKIID-----ISPVANMVN---RGAIVTASN----QTYTLPTV 791
Query: 524 VSFR 527
+S++
Sbjct: 792 LSYQ 795
Score = 39.3 bits (90), Expect = 5.4, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
S + L L NL S+NLS ISD L L L +L SLNL + + T L+ + L L
Sbjct: 173 SNIEGLQYLENLTSLNLSENNISD--LAPLKDLVNLVSLNLSSNR-TLVNLSGVEDLVNL 229
Query: 401 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 446
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 230 QELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLT 289
Query: 447 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
+LT L NL N + K+L ++G T L ++ SN L + L L
Sbjct: 290 NLTSLAKLPKLKNLYIKGNASLKSLATLNGATKLQLIDASNCTDLET-LGDISGLSELEM 348
Query: 500 LTLESCKVTANDIKRLQS-RDLPNLVS 525
+ L C + +K + S ++LPNLV+
Sbjct: 349 IQLSGC----SKLKEITSLKNLPNLVN 371
>gi|219821267|gb|ACL37756.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|298359896|gb|ADI77527.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|219821288|gb|ACL37770.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|290990502|ref|XP_002677875.1| predicted protein [Naegleria gruberi]
gi|284091485|gb|EFC45131.1| predicted protein [Naegleria gruberi]
Length = 225
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
+N+ F+ ++ ++ + L SL++ I D G ++ + LT L++ RI+D G
Sbjct: 55 VNVRFSNYFLEQVKFISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDEG 114
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
A ++ K L L+I G K+I ++ LT LN+ +N + D+ + IS + L+
Sbjct: 115 AKFISEMKQLIILDIYENETGVEGAKYISEMKQLTSLNIYEN-EIGDEGAKYISKMKQLI 173
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTL 502
SLN++N+RI G + + + L SL +
Sbjct: 174 SLNIANNRIGVEGAKFISEMNQLTSLYI 201
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 1/160 (0%)
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ +S + L S+++S+ I D + ++ ++ L SLN+ +I+D G ++ + L
Sbjct: 67 VKFISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDEGAKFISEMKQLII 126
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
LD++ GA Y+ K L SL I + D G K+I + L LN++ N + +
Sbjct: 127 LDIYENETGVEGAKYISEMKQLTSLNIYENEIGDEGAKYISKMKQLISLNIANN-RIGVE 185
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ IS + L SL + + I G + + +K L S L
Sbjct: 186 GAKFISEMNQLTSLYIYGNEIGDEGAKLINEMKQLISQIL 225
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%)
Query: 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
S++ L L++ ++ I DE ++ + L SLN+ + I DEG ++ + L L++
Sbjct: 71 SEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDEGAKFISEMKQLIILDIY 130
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ + G G +++S + L S+N+ I D + ++ + L SLN+ +I G +
Sbjct: 131 ENETGVEGAKYISEMKQLTSLNIYENEIGDEGAKYISKMKQLISLNIANNRIGVEGAKFI 190
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
+ + LT L ++G I D GA + K L S
Sbjct: 191 SEMNQLTSLYIYGNEIGDEGAKLINEMKQLIS 222
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++ + L L++S +G G +++S + L S+N++ ISD + ++ + L L++
Sbjct: 70 ISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDEGAKFISEMKQLIILDI 129
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+ G ++ + LT L+++ I D GA Y+ K L SL I + G K
Sbjct: 130 YENETGVEGAKYISEMKQLTSLNIYENEIGDEGAKYISKMKQLISLNIANNRIGVEGAKF 189
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
I +++ LT L + N + D+ +LI+ + L+S
Sbjct: 190 ISEMNQLTSLYIYGN-EIGDEGAKLINEMKQLIS 222
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 4/169 (2%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
++N+ F+ E + + + L SL++ IGDEG ++ + L L ++ ++
Sbjct: 54 IVNVRFSNYFLEQVKFISEMKQLTSLDISYHNIGDEGAKYISEMNQLTSLNIATNRISDE 113
Query: 342 GLRHLSGLTNLESINL--SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G + +S + L +++ + TG+ +G+ + ++ + L SLN+ +I D G ++ +
Sbjct: 114 GAKFISEMKQLIILDIYENETGV-EGA-KYISEMKQLTSLNIYENEIGDEGAKYISKMKQ 171
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
L L++ RI GA ++ L SL I G + D G K I ++ L
Sbjct: 172 LISLNIANNRIGVEGAKFISEMNQLTSLYIYGNEIGDEGAKLINEMKQL 220
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF 257
++K ++S++ + S F V F++ +++LT L++ + +S + L
Sbjct: 45 FMKSQFVNSIVNVRFS---NYFLEQVKFISEMKQLTSLDISYHNIGDEGAKYISEMNQLT 101
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
LN+ ++SD+G + S++ L +L++ NE E ++ + L SLN+ IGDE
Sbjct: 102 SLNIATNRISDEGAKFISEMKQLIILDIYENETGVEGAKYISEMKQLTSLNIYENEIGDE 161
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
G ++ + L L +++ ++G G + +S + L S+ + I D
Sbjct: 162 GAKYISKMKQLISLNIANNRIGVEGAKFISEMNQLTSLYIYGNEIGD 208
>gi|168704685|ref|ZP_02736962.1| hypothetical protein GobsU_34430 [Gemmata obscuriglobus UQM 2246]
Length = 227
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 2/171 (1%)
Query: 358 SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 416
F +D +L L + ++ + DA + T+ GL L L L L L + +T +
Sbjct: 57 KFEAGTDAALAALKKRPQVGAVEVFDATRCTEKGLVVLKDLPELRRLALGKSDLTLARVN 116
Query: 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 476
+ K LR L + G GL+D + +K L+ L L+LS+N +TDK + + L L L
Sbjct: 117 AIAKCKELRDLRLPGAGLSDPELAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGL 176
Query: 477 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
++ + +T GL LK L+ LRSL + KVTA+ ++ + D+PNL R
Sbjct: 177 YLAKTGLTDKGLAELKGLEGLRSLYVGGTKVTADAAEQF-ADDMPNLRVVR 226
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+K ++G+++V + T++ LV LK L L L L G D L + + KC
Sbjct: 70 KKRPQVGAVEVFD--ATRCTEKGLVVLKDLPELRRLAL---GKSDLTLARVNAIA--KCK 122
Query: 332 ELSDTQVGSSGL-----RHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ 385
EL D ++ +GL L LT LE ++LS ++D + + L L+ L L
Sbjct: 123 ELRDLRLPGAGLSDPELAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGLYLAKTG 182
Query: 386 ITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLR 425
+TD GLA L L GL L + G ++T D+ + + NLR
Sbjct: 183 LTDKGLAELKGLEGLRSLYVGGTKVTADAAEQFADDMPNLR 223
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
TD+ L LK + +++ + ++ GL L+ L L L+ +++ +T + A A
Sbjct: 62 TDAALAALKKRPQVGAVEVFDATRCTEKGLVVLKDLPELRRLALGKSD-LTLARVNAIAK 120
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L L L LK L +LE L++ +TD M + L L+ L ++
Sbjct: 121 CKELRDLRLPGAGLSDPELAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGLYLAK 180
Query: 190 SKVTDSGIAYLKGLSISSVIFI 211
+ +TD G+A LKGL +++
Sbjct: 181 TGLTDKGLAELKGLEGLRSLYV 202
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 8/159 (5%)
Query: 193 TDSGIAYLKGLSISSVIFILCSMIIRLFCLH---VFLTSLQKLTLLNLEGCPVTAACLDS 249
TD+ +A LK + + + C V L L +L L L +T A +++
Sbjct: 62 TDAALAALKKRPQVGAVEVFDAT----RCTEKGLVVLKDLPELRRLALGKSDLTLARVNA 117
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLN 308
++ L L L LSD + L+ L+L N ++TD+ + +K L L L
Sbjct: 118 IAKCKELRDLRLPGAGLSDPELAPLKALTRLEQLDLSENAQVTDKGMATVKTLERLRGLY 177
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
L G+ D+GL L GL L+ L + T+V + +
Sbjct: 178 LAKTGLTDKGLAELKGLEGLRSLYVGGTKVTADAAEQFA 216
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L + L SD+T + + + C L+ L +SD L L+ L+ L L N
Sbjct: 98 PELRRLALGKSDLTLARVNAIAKCKELRDLRLPGA-GLSDPELAPLKALTRLEQLDLSEN 156
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +GM L L L L + GL LKGL L SL + D+ +
Sbjct: 157 AQVTDKGMATVKTLERLRGLYLAKTGLTDKGLAELKGLEGLRSLYVGGTKVTADAAEQFA 216
Query: 177 SGLTNLKSLQ 186
+ NL+ ++
Sbjct: 217 DDMPNLRVVR 226
>gi|130774813|gb|ABO32419.1| InlA [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|219821363|gb|ACL37820.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDINPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|223006796|gb|ACM69355.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298359764|gb|ADI77461.1| truncated internalin A [Listeria monocytogenes]
gi|298359862|gb|ADI77510.1| truncated internalin A [Listeria monocytogenes]
gi|298360070|gb|ADI77614.1| truncated internalin A [Listeria monocytogenes]
gi|298360108|gb|ADI77633.1| truncated internalin A [Listeria monocytogenes]
gi|298360174|gb|ADI77666.1| truncated internalin A [Listeria monocytogenes]
gi|298360196|gb|ADI77677.1| truncated internalin A [Listeria monocytogenes]
gi|298360268|gb|ADI77713.1| truncated internalin A [Listeria monocytogenes]
gi|298360290|gb|ADI77724.1| truncated internalin A [Listeria monocytogenes]
gi|298360536|gb|ADI77847.1| truncated internalin A [Listeria monocytogenes]
gi|298360608|gb|ADI77883.1| truncated internalin A [Listeria monocytogenes]
gi|298360658|gb|ADI77908.1| truncated internalin A [Listeria monocytogenes]
gi|298360684|gb|ADI77921.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTGLKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|219821264|gb|ACL37754.1| internalin A [Listeria monocytogenes]
gi|219821306|gb|ACL37782.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|167862040|gb|ACA05719.1| InlA [Listeria monocytogenes]
gi|194326153|emb|CAQ77235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|219821300|gb|ACL37778.1| internalin A [Listeria monocytogenes]
gi|219821378|gb|ACL37830.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLKYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|46906689|ref|YP_013078.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|254932755|ref|ZP_05266114.1| internalin A [Listeria monocytogenes HPB2262]
gi|405748809|ref|YP_006672275.1| internalin A [Listeria monocytogenes ATCC 19117]
gi|405751670|ref|YP_006675135.1| internalin A [Listeria monocytogenes SLCC2378]
gi|417316727|ref|ZP_12103366.1| internalin A [Listeria monocytogenes J1-220]
gi|424713328|ref|YP_007014043.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|424822183|ref|ZP_18247196.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|50400895|sp|Q723K6.1|INLA_LISMF RecName: Full=Internalin-A; Flags: Precursor
gi|46879954|gb|AAT03255.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|130774757|gb|ABO32393.1| InlA [Listeria monocytogenes]
gi|130774763|gb|ABO32396.1| InlA [Listeria monocytogenes]
gi|130774781|gb|ABO32405.1| InlA [Listeria monocytogenes]
gi|130774785|gb|ABO32407.1| InlA [Listeria monocytogenes]
gi|130774789|gb|ABO32409.1| InlA [Listeria monocytogenes]
gi|167861870|gb|ACA05634.1| InlA [Listeria monocytogenes]
gi|167861880|gb|ACA05639.1| InlA [Listeria monocytogenes]
gi|167861882|gb|ACA05640.1| InlA [Listeria monocytogenes]
gi|167861884|gb|ACA05641.1| InlA [Listeria monocytogenes]
gi|167861886|gb|ACA05642.1| InlA [Listeria monocytogenes]
gi|167861896|gb|ACA05647.1| InlA [Listeria monocytogenes]
gi|167861898|gb|ACA05648.1| InlA [Listeria monocytogenes]
gi|167861910|gb|ACA05654.1| InlA [Listeria monocytogenes]
gi|167861912|gb|ACA05655.1| InlA [Listeria monocytogenes]
gi|167861952|gb|ACA05675.1| InlA [Listeria monocytogenes]
gi|167861958|gb|ACA05678.1| InlA [Listeria monocytogenes]
gi|167861960|gb|ACA05679.1| InlA [Listeria monocytogenes]
gi|167861966|gb|ACA05682.1| InlA [Listeria monocytogenes]
gi|167861988|gb|ACA05693.1| InlA [Listeria monocytogenes]
gi|167861996|gb|ACA05697.1| InlA [Listeria monocytogenes]
gi|167862008|gb|ACA05703.1| InlA [Listeria monocytogenes]
gi|167862010|gb|ACA05704.1| InlA [Listeria monocytogenes]
gi|167862014|gb|ACA05706.1| InlA [Listeria monocytogenes]
gi|167862016|gb|ACA05707.1| InlA [Listeria monocytogenes]
gi|194239380|emb|CAQ76830.1| internalin A [Listeria monocytogenes]
gi|194239394|emb|CAQ76837.1| internalin A [Listeria monocytogenes]
gi|194326167|emb|CAQ77242.1| internalin A [Listeria monocytogenes]
gi|223006786|gb|ACM69350.1| internalin A [Listeria monocytogenes]
gi|223006788|gb|ACM69351.1| internalin A [Listeria monocytogenes]
gi|223006798|gb|ACM69356.1| internalin A [Listeria monocytogenes]
gi|223006804|gb|ACM69359.1| internalin A [Listeria monocytogenes]
gi|223006810|gb|ACM69362.1| internalin A [Listeria monocytogenes]
gi|293584308|gb|EFF96340.1| internalin A [Listeria monocytogenes HPB2262]
gi|294358391|gb|ADE73848.1| InlA [Listeria monocytogenes]
gi|294358403|gb|ADE73854.1| InlA [Listeria monocytogenes]
gi|298359884|gb|ADI77521.1| internalin A [Listeria monocytogenes]
gi|298359898|gb|ADI77528.1| internalin A [Listeria monocytogenes]
gi|298359902|gb|ADI77530.1| internalin A [Listeria monocytogenes]
gi|298359908|gb|ADI77533.1| internalin A [Listeria monocytogenes]
gi|298359940|gb|ADI77549.1| internalin A [Listeria monocytogenes]
gi|298359948|gb|ADI77553.1| internalin A [Listeria monocytogenes]
gi|298360056|gb|ADI77607.1| internalin A [Listeria monocytogenes]
gi|298360094|gb|ADI77626.1| internalin A [Listeria monocytogenes]
gi|298360148|gb|ADI77653.1| internalin A [Listeria monocytogenes]
gi|298360270|gb|ADI77714.1| internalin A [Listeria monocytogenes]
gi|298360288|gb|ADI77723.1| internalin A [Listeria monocytogenes]
gi|298360324|gb|ADI77741.1| internalin A [Listeria monocytogenes]
gi|298360326|gb|ADI77742.1| internalin A [Listeria monocytogenes]
gi|298360350|gb|ADI77754.1| internalin A [Listeria monocytogenes]
gi|298360362|gb|ADI77760.1| internalin A [Listeria monocytogenes]
gi|298360456|gb|ADI77807.1| internalin A [Listeria monocytogenes]
gi|298360480|gb|ADI77819.1| internalin A [Listeria monocytogenes]
gi|298360508|gb|ADI77833.1| internalin A [Listeria monocytogenes]
gi|298360520|gb|ADI77839.1| internalin A [Listeria monocytogenes]
gi|298360554|gb|ADI77856.1| internalin A [Listeria monocytogenes]
gi|298360632|gb|ADI77895.1| internalin A [Listeria monocytogenes]
gi|298360634|gb|ADI77896.1| internalin A [Listeria monocytogenes]
gi|298360662|gb|ADI77910.1| internalin A [Listeria monocytogenes]
gi|328475915|gb|EGF46639.1| internalin A [Listeria monocytogenes J1-220]
gi|332310863|gb|EGJ23958.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|340052073|emb|CBY84388.1| internalin A [Listeria monocytogenes]
gi|340052075|emb|CBY84389.1| internalin A [Listeria monocytogenes]
gi|404218009|emb|CBY69373.1| internalin A (LPXTG motif) [Listeria monocytogenes ATCC 19117]
gi|404220870|emb|CBY72233.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012512|emb|CCO63052.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|443428812|gb|AGC92205.1| internalin A [Listeria monocytogenes]
gi|443428814|gb|AGC92206.1| internalin A [Listeria monocytogenes]
gi|443428816|gb|AGC92207.1| internalin A [Listeria monocytogenes]
gi|443428818|gb|AGC92208.1| internalin A [Listeria monocytogenes]
gi|443428826|gb|AGC92212.1| internalin A [Listeria monocytogenes]
gi|443428836|gb|AGC92217.1| internalin A [Listeria monocytogenes]
gi|443428840|gb|AGC92219.1| internalin A [Listeria monocytogenes]
gi|443428852|gb|AGC92225.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|313485075|gb|ADR53008.1| InlA [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821312|gb|ACL37786.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLASLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|112961667|gb|ABI28464.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTGLKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS- 259
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|322952096|gb|ADX21047.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|167862002|gb|ACA05700.1| InlA [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|85679236|gb|ABC72034.1| InlA [Listeria monocytogenes]
Length = 794
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 -NISPLAGLTALT 319
>gi|85679228|gb|ABC72030.1| InlA [Listeria monocytogenes]
Length = 794
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 89 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 144
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 145 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 197
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 253
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 307
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 ----NISPLAGLTALT 319
>gi|340052071|emb|CBY84387.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|322952083|gb|ADX21041.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|443729220|gb|ELU15204.1| hypothetical protein CAPTEDRAFT_93038, partial [Capitella teleta]
Length = 382
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 13/249 (5%)
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
L +L L++N+ LS F + +L L+L N I D V K L +L SLNL S
Sbjct: 119 LDNLQVLDVNKNSLSVIPNGVFEGLRALNGLSLARNRIDDLSQVSFKELVSLASLNLYSN 178
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGS---SGLRHLSGLTNLESINLSFTGISDGSLRK 369
I D + GL +L L L Q+ S R LS L L N + TGI +G+
Sbjct: 179 HITDLAADSFDGLSSLSQLNLEQNQMVSMEQDAFRGLSSLNKLYLENNNLTGIKNGT--- 235
Query: 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
AGL L++L L ++TD +A ++ + L HL L I D A+ + + LR++ +
Sbjct: 236 FAGLHHLQTLRLSGNRLTD--VAFVSDMLALQHLHLDDNAIEDLDASVFDHLRQLRTISL 293
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---- 485
G L + + D + L L++S+N L +L+ GL+ L L +S++ +++
Sbjct: 294 VGNQLRHFPRQLLSDKAYLQELDISKNA-LRALDSDLLEGLSSLQYLFLSDNDLSTLPSV 352
Query: 486 AGLRHLKPL 494
GL HL+ +
Sbjct: 353 QGLMHLEEM 361
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 14/208 (6%)
Query: 301 LTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLR------HLSGLTNLE 353
L+ L SL LD +G + L L LK L L ++ + GL +L
Sbjct: 40 LSQLRSLKLDVTYVGPQLPAGLFQQLPQLKTLSLYHVLPPTAHFQLSLPPDAFVGLHDLA 99
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
S++L G+ + GL +L+ L+++ ++ L L L L RI D
Sbjct: 100 SLHLVDLGLRSLTPGVFRGLDNLQVLDVNKNSLSVIPNGVFEGLRALNGLSLARNRIDDL 159
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ +L SL + +TD LSSL+ LNL QN + + GL+ L
Sbjct: 160 SQVSFKELVSLASLNLYSNHITDLAADSFDGLSSLSQLNLEQN-QMVSMEQDAFRGLSSL 218
Query: 474 VSLNVSNSRITS------AGLRHLKPLK 495
L + N+ +T AGL HL+ L+
Sbjct: 219 NKLYLENNNLTGIKNGTFAGLHHLQTLR 246
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 29/231 (12%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
S L SL LNL ++D + F + SL LNL N++ +GL++L L
Sbjct: 163 SFKELVSLASLNLYSNHITDLAADSFDGLSSLSQLNLEQNQMVSMEQDAFRGLSSLNKLY 222
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L++ NLTG+ N G+ +GL +L+++ LS ++D +
Sbjct: 223 LENN--------NLTGIKN-----------GT-----FAGLHHLQTLRLSGNRLTDVAF- 257
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
++ + +L+ L+LD I D + L L + L G ++ L + L+ L+
Sbjct: 258 -VSDMLALQHLHLDDNAIEDLDASVFDHLRQLRTISLVGNQLRHFPRQLLSDKAYLQELD 316
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
I L ++ LSSL L LS N +L+ TL + GL L ++VS
Sbjct: 317 ISKNALRALDSDLLEGLSSLQYLFLSDN-DLS--TLPSVQGLMHLEEMDVS 364
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 117/304 (38%), Gaps = 61/304 (20%)
Query: 102 LRGLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
RGL NL L +N+ ++ G+ F GL L L L R V+ K L+ L SL
Sbjct: 116 FRGLDNLQVLDVNKNSLSVIPNGV--FEGLRALNGLSLARNRIDDLSQVSFKELVSLASL 173
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLF 220
N+ + N ITD GL++L L + +++ +GLS
Sbjct: 174 NL-YSNHITDLAADSFDGLSSLSQLNLEQNQMVSMEQDAFRGLS---------------- 216
Query: 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280
SL KL YL N +G F+ + L
Sbjct: 217 -------SLNKL-------------------------YLENNNLTGIKNGT--FAGLHHL 242
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
+ L L N +TD V + L+ L+LD I D L L+ + L Q+
Sbjct: 243 QTLRLSGNRLTDVAFV--SDMLALQHLHLDDNAIEDLDASVFDHLRQLRTISLVGNQLRH 300
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+ LS L+ +++S + L GLSSL+ L L +D L+ L S+ GL
Sbjct: 301 FPRQLLSDKAYLQELDISKNALRALDSDLLEGLSSLQYLFL-----SDNDLSTLPSVQGL 355
Query: 401 THLD 404
HL+
Sbjct: 356 MHLE 359
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 7/205 (3%)
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
GL +L SL+L G+ GL NL+ L+++ + GL L ++L+
Sbjct: 94 GLHDLASLHLVDLGLRSLTPGVFRGLDNLQVLDVNKNSLSVIPNGVFEGLRALNGLSLAR 153
Query: 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 419
I D S L SL SLNL + ITD + L+ L+ L+L ++ R
Sbjct: 154 NRIDDLSQVSFKELVSLASLNLYSNHITDLAADSFDGLSSLSQLNLEQNQMVSMEQDAFR 213
Query: 420 NFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477
+L L + LT G+K+ L L L LS N LTD + +S + L L+
Sbjct: 214 GLSSLNKLYLENNNLT--GIKNGTFAGLHHLQTLRLSGN-RLTD--VAFVSDMLALQHLH 268
Query: 478 VSNSRITSAGLRHLKPLKNLRSLTL 502
+ ++ I L+ LR+++L
Sbjct: 269 LDDNAIEDLDASVFDHLRQLRTISL 293
>gi|28210241|ref|NP_781185.1| internalin A-like protein/ S-layer protein [Clostridium tetani E88]
gi|28202677|gb|AAO35122.1| internalin A-like protein/putative S-layer protein [Clostridium
tetani E88]
Length = 695
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 177/386 (45%), Gaps = 71/386 (18%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L LK NL++L + + LE LRGL+NL +L N + LI
Sbjct: 372 SNLEPLKSMDNLENL---YLTKTKVVSLEPLRGLTNLKALVI---NETNVSDLTPIKNLI 425
Query: 132 NLVKLDLERCTRIHGGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
NL ER T LV+L G L+ LESL+I N S++ + LTNLKSL I+
Sbjct: 426 NL-----ERLTLGDNKLVSLAGIENLVNLESLDINKNNV---SNLASIRDLTNLKSLNIN 477
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+ VTD LS+ +T+L+ L ++L VT+ L
Sbjct: 478 ENNVTD--------LSV--------------------VTNLKNLERISLNKNGVTS--LG 507
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG-----SLKVLNLGFNEITDECLVHLKGLTN 303
+L+AL L ++ L+ S +G LK L L N+I+D L L LT+
Sbjct: 508 ALAALPELEWVTAKENGLT-------STVGLQNALKLKELFLDSNQISD--LSSLANLTS 558
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
LE+L+L + I D + +L+ L +K L L +GS + L+ + NL + + IS
Sbjct: 559 LETLSLRTNNISD--VSSLSDLTRMKNLYLHKNNIGS--IAPLASMENLTRLYVGKNNIS 614
Query: 364 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423
D S +A + +LK+L++ +++ G ++ L L LD+ ITD+ A N
Sbjct: 615 DIS--AVANMKNLKTLSIGENMVSNIG--PVSGLQSLETLDVADNFITDASPAI--GLPN 668
Query: 424 LRSLEICGGGLTDAGVKHIKDLSSLT 449
L+ + + + +A + D ++T
Sbjct: 669 LKDIMLLNTKVPEAQINAFPDSVTVT 694
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 185/377 (49%), Gaps = 48/377 (12%)
Query: 135 KLDLERCTRIH---GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
K DL+R T++ + NL G+ L L + S+++PL + NL++L ++ +K
Sbjct: 333 KADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISNLEPLKSMDNLENLYLTKTK 392
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS 251
V + L+GL+ + I + + L + L +L++LTL + V+ A +++L
Sbjct: 393 VV--SLEPLRGLTNLKALVINETNVSDLTPIK-NLINLERLTL--GDNKLVSLAGIENLV 447
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311
L S L++N+ +S+ + +LK LN+ N +TD +V L NLE ++L+
Sbjct: 448 NLES---LDINKNNVSN--LASIRDLTNLKSLNINENNVTDLSVVT--NLKNLERISLNK 500
Query: 312 CGI-----------------GDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTN 351
G+ + GL + GL N LK L L Q+ S L L+ LT+
Sbjct: 501 NGVTSLGALAALPELEWVTAKENGLTSTVGLQNALKLKELFLDSNQI--SDLSSLANLTS 558
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
LE+++L ISD S L+ L+ +K+L L I +A L S+ LT L + I+
Sbjct: 559 LETLSLRTNNISDVS--SLSDLTRMKNLYLHKNNI--GSIAPLASMENLTRLYVGKNNIS 614
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
D A + N KNL++L I +++ G + L SL L+++ N +TD + + GL
Sbjct: 615 DISA--VANMKNLKTLSIGENMVSNIG--PVSGLQSLETLDVADNF-ITDASPAI--GLP 667
Query: 472 GLVSLNVSNSRITSAGL 488
L + + N+++ A +
Sbjct: 668 NLKDIMLLNTKVPEAQI 684
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 118/430 (27%), Positives = 192/430 (44%), Gaps = 73/430 (16%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+L S+DLS +++ D SGL +LK+ + ++ +I+D ++ L GL NL L+
Sbjct: 103 ENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKN-------KITD--VKALDGLKNLEKLN 153
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCT-------------RI----HGGLVNLKGLM 155
R N +G+K GL L +LDL + + RI G+ N + L
Sbjct: 154 LRDNKVKNIEGLK---GLEKLRELDLGKNSVFQPKPLKDLKNLRILNLESNGIGNAEDLE 210
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG----IAYLKGLSISSVIFI 211
+L+ + + T D++PL LTN+ L + + VT G + LK L+I++
Sbjct: 211 ELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVTHIGKLKDMTNLKRLNINNDSIE 270
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLN---------------LEGCPVTAACLDSLS-ALGS 255
+ + + L Q++ L N + A D + G+
Sbjct: 271 DLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEVKFADKNLEFAIRDKIEKPKGA 330
Query: 256 LFYLNLNRC---QLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+ +L R L D + I + L+VLN G N I++ L LK + NLE+L L
Sbjct: 331 IKKADLQRVTQLDLWDKNVTNLAGIENLIDLRVLNAGKNNISN--LEPLKSMDNLENLYL 388
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
+ L L GL NLK L +++T V S L + L NLE + L D L
Sbjct: 389 TKTKVV--SLEPLRGLTNLKALVINETNV--SDLTPIKNLINLERLTL-----GDNKLVS 439
Query: 370 LAGLSSLKSL-NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
LAG+ +L +L +LD + + LA++ LT L L++ +TD + + N KNL +
Sbjct: 440 LAGIENLVNLESLDINKNNVSNLASIRDLTNLKSLNINENNVTD--LSVVTNLKNLERIS 497
Query: 429 ICGGGLTDAG 438
+ G+T G
Sbjct: 498 LNKNGVTSLG 507
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 173/435 (39%), Gaps = 132/435 (30%)
Query: 172 DMKPLSGLT---NLKSLQISCSKVTD----SGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
++K +SGL NL+SL +S +++ D SG+ YLK L++
Sbjct: 92 NIKDISGLEFFENLQSLDLSNNEIKDLGSLSGLKYLKELTLYK----------------- 134
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
K+T + +L L +L LNL ++ + E + L+ L+
Sbjct: 135 -----NKIT------------DVKALDGLKNLEKLNLRDNKVKN--IEGLKGLEKLRELD 175
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGD----------EGLV----------NLTG 324
LG N + LK L NL LNL+S GIG+ E L+ L
Sbjct: 176 LGKNSVFQPK--PLKDLKNLRILNLESNGIGNAEDLEELKQVEHLILSNNTVDDVEPLLT 233
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLN--- 380
L N+ L L D V G L +TNL+ +N++ I D L+K L LK N
Sbjct: 234 LTNVNKLYLDDNPVTHIG--KLKDMTNLKRLNINNDSIEDLAELKKFKNLQWLKFKNQEM 291
Query: 381 -LDARQITD---------------------------TGLAALTSLTGLTHLDLFGARITD 412
LD +++ D G L +T LDL+ +T+
Sbjct: 292 VLDNKKLNDLLVDPNKEVKFADKNLEFAIRDKIEKPKGAIKKADLQRVTQLDLWDKNVTN 351
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK---TLELISG 469
A + N +LR L +AG +I +L L ++ +N LT +LE + G
Sbjct: 352 --LAGIENLIDLRVL--------NAGKNNISNLEPLKSMDNLENLYLTKTKVVSLEPLRG 401
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-----------------LESCKVTANDI 512
LT L +L ++ + ++ L +K L NL LT LES + N++
Sbjct: 402 LTNLKALVINETNVSD--LTPIKNLINLERLTLGDNKLVSLAGIENLVNLESLDINKNNV 459
Query: 513 KRLQS-RDLPNLVSF 526
L S RDL NL S
Sbjct: 460 SNLASIRDLTNLKSL 474
>gi|290985732|ref|XP_002675579.1| predicted protein [Naegleria gruberi]
gi|284089176|gb|EFC42835.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 9/235 (3%)
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS---LFYLNLNRCQLSDDGCEKFS 275
FCL + K T NLE +T + ++ +G+ L YLNLN + GCE
Sbjct: 103 FFCLKECFEHISKFT--NLEMLSITQSDFENALWIGNFTQLTYLNLNGNFVGRSGCENIR 160
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
S+ LNL N++ D+ V+L L NL+ L +++ IG+ G +L+ + L L +S
Sbjct: 161 NCQSIMELNLSNNDLQDDACVYLSELKNLKILLVENNDIGENGCESLSRIETLTKLNISR 220
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+ G ++ L+NL ++ S I GS+ L L+ L L L I + G+ ++
Sbjct: 221 NHIHDDGFSNICKLSNLTHLHASCCLI--GSVSNLTNLNKLIELELSGNLIDNEGVKVIS 278
Query: 396 SLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
+ L L+L + I+D YL NL L++ L + +K L L
Sbjct: 279 EMQNLRILNLVNSYMHISDDAVHYLTKLVNLELLDLSENSLNIEDIDCLKSLPRL 333
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 6/209 (2%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+++ + +LT LNL G V + +++ S+ LNL+ L DD C S++ +LK+L
Sbjct: 133 LWIGNFTQLTYLNLNGNFVGRSGCENIRNCQSIMELNLSNNDLQDDACVYLSELKNLKIL 192
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SG 342
+ N+I + L + L LN+ I D+G N+ L NL L S +GS S
Sbjct: 193 LVENNDIGENGCESLSRIETLTKLNISRNHIHDDGFSNICKLSNLTHLHASCCLIGSVSN 252
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--DARQITDTGLAALTSLTGL 400
L +L+ L LE LS I + ++ ++ + +L+ LNL I+D + LT L L
Sbjct: 253 LTNLNKLIELE---LSGNLIDNEGVKVISEMQNLRILNLVNSYMHISDDAVHYLTKLVNL 309
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEI 429
LDL + L++ LR ++I
Sbjct: 310 ELLDLSENSLNIEDIDCLKSLPRLREVKI 338
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 34/232 (14%)
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
C F + LK LNL F EC H+ TNLE L++ E + + L
Sbjct: 91 CTDFQR---LKSLNLFF--CLKECFEHISKFTNLEMLSITQSDF--ENALWIGNFTQLTY 143
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L+ VG SG ++ ++ +NLS + D + L+ L +LK L ++ I + G
Sbjct: 144 LNLNGNFVGRSGCENIRNCQSIMELNLSNNDLQDDACVYLSELKNLKILLVENNDIGENG 203
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
+L+ + LT L++ I D G F N IC LS+LT
Sbjct: 204 CESLSRIETLTKLNISRNHIHDDG------FSN-----ICK-------------LSNLTH 239
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L+ S C L L + L L+ L +S + I + G++ + ++NLR L L
Sbjct: 240 LHAS--CCLIGSVSNL-TNLNKLIELELSGNLIDNEGVKVISEMQNLRILNL 288
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 26/285 (9%)
Query: 55 QGSSLLS-VDLSGSDVTDSGLIHLKDCSNLQ---SLDFNFCIQISDGGLEHLRGLSNLTS 110
Q LL+ V S +D + G I +K C++ Q SL+ FC++ EH+ +NL
Sbjct: 66 QSQRLLNIVGFSSTDNSSLG-IFVKYCTDFQRLKSLNLFFCLK---ECFEHISKFTNLEM 121
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS +++ A + F L L+L G N++ + LN+ N + D
Sbjct: 122 LSITQSDFENALWIGNFT---QLTYLNLNGNFVGRSGCENIRNCQSIMELNLSN-NDLQD 177
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH----VFL 226
LS L NLK L + + + ++G L S I L + I +H +
Sbjct: 178 DACVYLSELKNLKILLVENNDIGENGCESL------SRIETLTKLNISRNHIHDDGFSNI 231
Query: 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL- 285
L LT L+ C + + + +L+ L L L L+ + ++G + S++ +L++LNL
Sbjct: 232 CKLSNLTHLHASCCLIGS--VSNLTNLNKLIELELSGNLIDNEGVKVISEMQNLRILNLV 289
Query: 286 -GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
+ I+D+ + +L L NLE L+L + E + L L L+
Sbjct: 290 NSYMHISDDAVHYLTKLVNLELLDLSENSLNIEDIDCLKSLPRLR 334
>gi|428304289|ref|YP_007141114.1| hypothetical protein Cri9333_0667 [Crinalium epipsammum PCC 9333]
gi|428245824|gb|AFZ11604.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 382
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 120/239 (50%), Gaps = 23/239 (9%)
Query: 263 RCQL-SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 321
R QL + D + + +K LNL EIT L ++ L NL L I D L
Sbjct: 95 RQQLGTGDKPLTLNALQRVKHLNLINKEIT--SLEGIQALRNLTELRFGENKISD--LAP 150
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L GL NL L L Q+ S ++ L L NL S+ LS ISD L+ LAGL+ L +L L
Sbjct: 151 LRGLTNLTTLHLYRNQI--SDVKPLLSLRNLTSLELSSNPISD--LKPLAGLTKLTTLGL 206
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+ITD L L L LT L+L G +I+D L NL L + G ++D +K
Sbjct: 207 GGNKITD--LKPLAGLANLTTLELSGNKISD--LKPLAGLANLTKLYLSGNKISD--LKP 260
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 500
+ L+ LT L L N ++D ++ ++GL L L++ N++I ++PL NL SL
Sbjct: 261 VAGLTKLTKLWLDNN-QISD--VQPLAGLINLTFLSLDNNKI-----NDVQPLANLTSL 311
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 135/309 (43%), Gaps = 75/309 (24%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
LE ++ L NLT L F N + GL NL L L R + ++K L+ L
Sbjct: 126 LEGIQALRNLTELRFGENKI---SDLAPLRGLTNLTTLHLYR-----NQISDVKPLLSLR 177
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
+L + SD+KPL+GLT L +L + +K+TD LK L+
Sbjct: 178 NLTSLELSSNPISDLKPLAGLTKLTTLGLGGNKITD-----LKPLA-------------- 218
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
L LT L L G ++ L L+ L +L L L+ ++SD
Sbjct: 219 ---------GLANLTTLELSGNKISD--LKPLAGLANLTKLYLSGNKISD---------- 257
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L + GLT L L LD+ I D + L GL NL L L + ++
Sbjct: 258 ----------------LKPVAGLTKLTKLWLDNNQISD--VQPLAGLINLTFLSLDNNKI 299
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
++ L+ LT+L + LS ISD + L GL+ L L+L+ +I+D +T L
Sbjct: 300 ND--VQPLANLTSLMGLGLSLNKISD--VTPLRGLTKLNWLDLNLNKISD-----VTPLA 350
Query: 399 GLTHLDLFG 407
GLT+L++ G
Sbjct: 351 GLTNLNVNG 359
>gi|167861906|gb|ACA05652.1| InlA [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|167861924|gb|ACA05661.1| InlA [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLSDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 120/254 (47%), Gaps = 46/254 (18%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487
+ G L D G + +LS L L N +Q NL +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGTLASLTNLSDLDLAN-NQISNLAP-----LSGLTKLTELKLGANQIS--- 308
Query: 488 LRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 --NISPLAGLTALT 320
>gi|322952092|gb|ADX21045.1| internalin A [Listeria monocytogenes]
gi|322952094|gb|ADX21046.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|299469989|emb|CBN79166.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
Length = 894
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 2/241 (0%)
Query: 218 RLFCLHVF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
R F H+ L L +L L L +T + L AL +L +L+L QL+ +
Sbjct: 84 RWFQGHIPKELGDLSQLQALELYRNQLTGPIPEELGALSNLLWLSLYSNQLTGEIPATLG 143
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
++G+L+ LNL +N+++ L +NL L L S + DE L L NL+ L+LS
Sbjct: 144 QLGNLEELNLSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDEIPATLGQLGNLQQLDLSW 203
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
++ + L GL+ L+++ L F +S L LS+L+ L+L + ++TD A L
Sbjct: 204 NKLSGYIPQELGGLSQLQTLWLYFNQLSGPIPEALGTLSNLRELSLYSNRLTDEIPATLG 263
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L L L L +++ L + L++L + LT + + DLS L L L+
Sbjct: 264 QLGNLQQLRLSWNKLSGHIPQELGSLSQLQTLGLHHNQLTGPIFEALGDLSELDFLVLND 323
Query: 456 N 456
N
Sbjct: 324 N 324
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 111/266 (41%), Gaps = 25/266 (9%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
L L L L L R QL+ E+ + +L L+L N++T E L L NLE LN
Sbjct: 93 ELGDLSQLQALELYRNQLTGPIPEELGALSNLLWLSLYSNQLTGEIPATLGQLGNLEELN 152
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L + L NL+ L LS Q+ L L NL+ ++LS+ +S +
Sbjct: 153 LSWNKLSGPIPDVLGAHSNLRELLLSSNQLTDEIPATLGQLGNLQQLDLSWNKLSGYIPQ 212
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
+L GLS L++L L Q++ AL +L+ NLR L
Sbjct: 213 ELGGLSQLQTLWLYFNQLSGPIPEALGTLS------------------------NLRELS 248
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ LTD + L +L L LS N L+ + + L+ L +L + ++++T
Sbjct: 249 LYSNRLTDEIPATLGQLGNLQQLRLSWN-KLSGHIPQELGSLSQLQTLGLHHNQLTGPIF 307
Query: 489 RHLKPLKNLRSLTLESCKVTANDIKR 514
L L L L L ++ I R
Sbjct: 308 EALGDLSELDFLVLNDNQLLGKWISR 333
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 6/245 (2%)
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLV--NLTGLCNLKCLE 332
G + L L N + E L L NL+ L+L S G +G + L L L+ LE
Sbjct: 45 GRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKLSGRWFQGHIPKELGDLSQLQALE 104
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
L Q+ L L+NL ++L ++ L L +L+ LNL +++
Sbjct: 105 LYRNQLTGPIPEELGALSNLLWLSLYSNQLTGEIPATLGQLGNLEELNLSWNKLSGPIPD 164
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
L + + L L L ++TD A L NL+ L++ L+ + + LS L L
Sbjct: 165 VLGAHSNLRELLLSSNQLTDEIPATLGQLGNLQQLDLSWNKLSGYIPQELGGLSQLQTLW 224
Query: 453 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
L N L+ E + L+ L L++ ++R+T L L NL+ L L K++ +
Sbjct: 225 LYFN-QLSGPIPEALGTLSNLRELSLYSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIP 283
Query: 513 KRLQS 517
+ L S
Sbjct: 284 QELGS 288
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 114/264 (43%), Gaps = 31/264 (11%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L D S LQ+L+ + Q++ E L LSNL LS +N +T + L NL +
Sbjct: 93 ELGDLSQLQALEL-YRNQLTGPIPEELGALSNLLWLSLY-SNQLTGEIPATLGQLGNLEE 150
Query: 136 LDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L ++ G + ++ G L L + N +TD L L NL+ L +S +K++
Sbjct: 151 LNLS-WNKLSGPIPDVLGAHSNLRELLLS-SNQLTDEIPATLGQLGNLQQLDLSWNKLSG 208
Query: 195 SGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG 254
L GLS +L L ++ L + ++L L
Sbjct: 209 YIPQELGGLS-------------QLQTLWLYFNQL-------------SGPIPEALGTLS 242
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
+L L+L +L+D+ ++G+L+ L L +N+++ L L+ L++L L +
Sbjct: 243 NLRELSLYSNRLTDEIPATLGQLGNLQQLRLSWNKLSGHIPQELGSLSQLQTLGLHHNQL 302
Query: 315 GDEGLVNLTGLCNLKCLELSDTQV 338
L L L L L+D Q+
Sbjct: 303 TGPIFEALGDLSELDFLVLNDNQL 326
>gi|223006802|gb|ACM69358.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821309|gb|ACL37784.1| internalin A [Listeria monocytogenes]
gi|219821393|gb|ACL37840.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|150371726|dbj|BAF65678.1| internalin A [Listeria monocytogenes]
gi|194326151|emb|CAQ77234.1| internalin A [Listeria monocytogenes]
gi|298360180|gb|ADI77669.1| internalin A [Listeria monocytogenes]
gi|298360390|gb|ADI77774.1| internalin A [Listeria monocytogenes]
gi|298360416|gb|ADI77787.1| internalin A [Listeria monocytogenes]
gi|298360620|gb|ADI77889.1| internalin A [Listeria monocytogenes]
gi|298360656|gb|ADI77907.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|428304096|ref|YP_007140921.1| hypothetical protein Cri9333_0441 [Crinalium epipsammum PCC 9333]
gi|428245631|gb|AFZ11411.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 504
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 30/262 (11%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
LQ + LN+ +T+ L+ + AL +L LNL Q+SD + + L L L N
Sbjct: 68 LQGVKNLNISNAEITS--LEGIQALRNLTTLNLFANQISD--VKPLRSLTKLTTLELVSN 123
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+I+D + L GLTNL L+L I D + LTGL L L+LSD ++ S + L G
Sbjct: 124 KISD--VKPLFGLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDNKI--SDVEPLFG 177
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
LTNL ++LS +SD L+ L GL+ L L L+ QI+D L L +LT LT LDL
Sbjct: 178 LTNLGVLDLSRNKLSD--LKPLWGLTKLTMLLLNTNQISD--LKPLANLTKLTTLDLSDN 233
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDA--------------GVKHIKDLSSLTLLNLS 454
+I+D L L L + ++D I D++SLT L
Sbjct: 234 KISDVKP--LTGLTKLTELALGDNKISDLKPLLGLTNLTELVLNTNEISDVTSLTGLTNI 291
Query: 455 QNCNLTDKTLELISGLTGLVSL 476
+ +L + ++ LTGL L
Sbjct: 292 TSLHLGGNKISNVTSLTGLTKL 313
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 138/253 (54%), Gaps = 26/253 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
++ L L +LN+ + N I SD+KPL LT L +L++ +K++D + L GL+ + +
Sbjct: 87 IQALRNLTTLNL-FANQI--SDVKPLRSLTKLTTLELVSNKISD--VKPLFGLTNLNRLD 141
Query: 211 ILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
+ + I + LT L KLT L+L ++ ++ L L +L L+L+R +LSD
Sbjct: 142 LSDNKISDVKP----LTGLTKLTELDLSDNKISD--VEPLFGLTNLGVLDLSRNKLSD-- 193
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ + L +L L N+I+D L L LT L +L+L I D + LTGL L
Sbjct: 194 LKPLWGLTKLTMLLLNTNQISD--LKPLANLTKLTTLDLSDNKISD--VKPLTGLTKLTE 249
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
L L D ++ S L+ L GLTNL + L+ ISD + L GL+++ SL+L +I++
Sbjct: 250 LALGDNKI--SDLKPLLGLTNLTELVLNTNEISD--VTSLTGLTNITSLHLGGNKISN-- 303
Query: 391 LAALTSLTGLTHL 403
+TSLTGLT L
Sbjct: 304 ---VTSLTGLTKL 313
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 19/157 (12%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L G+ NL N T SL + L +L +LNL A QI+D + L SLT LT L+L
Sbjct: 68 LQGVKNLNISNAEIT-----SLEGIQALRNLTTLNLFANQISD--VKPLRSLTKLTTLEL 120
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+I+D + NL L++ ++D VK + L+ LT L+LS N ++D +E
Sbjct: 121 VSNKISDVKPLF--GLTNLNRLDLSDNKISD--VKPLTGLTKLTELDLSDN-KISD--VE 173
Query: 466 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
+ GLT L L++S ++++ LKPL L LT+
Sbjct: 174 PLFGLTNLGVLDLSRNKLSD-----LKPLWGLTKLTM 205
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL LD + +ISD ++ L GL+ LT L N ++ GL NL LDL R
Sbjct: 135 TNLNRLDLSDN-KISD--VKPLTGLTKLTELDLSDNKI---SDVEPLFGLTNLGVLDLSR 188
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
L +LK L L L + N SD+KPL+ LT L +L +S +K++D + L
Sbjct: 189 -----NKLSDLKPLWGLTKLTMLLLNTNQISDLKPLANLTKLTTLDLSDNKISD--VKPL 241
Query: 201 KGLS 204
GL+
Sbjct: 242 TGLT 245
>gi|223006806|gb|ACM69360.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|384251251|gb|EIE24729.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 498
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 163/364 (44%), Gaps = 64/364 (17%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGL 203
G V L GL +LE L K C+ ++ + L +LK+ ++CS +++D A + L
Sbjct: 126 QGFPVMLTGLRQLELLACKGCSGLSSRPFAGIESLVSLKTCLLNCSLRMSDDTCADIASL 185
Query: 204 SISSVIFILCSMI---IRLFCL-HVFLTSL---QKLTLLNLEG-CPVTAACLDSLS-ALG 254
+ + CS + + C+ H L SL +LT L+L G ++ A + ++ L
Sbjct: 186 RQVQTLGLACSALEGCLTPACITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLT 245
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
L L+L R C+ N G +TD + L LT LES+ L +
Sbjct: 246 RLIDLDLRR-----PACD-----------NPGAAVVTDAGIAALASLTLLESVRLSQAQV 289
Query: 315 GDEGLVNLTGLCNLKCLE------LSDTQVGS-SGLRHLS-------------------- 347
G G L L L+CLE LSDT V + LRHLS
Sbjct: 290 GQAGCAALASLPRLRCLELSYCDSLSDTPVCELTRLRHLSELSLAGCASVTDIAVTALVR 349
Query: 348 GLTNLESINLS--FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS---LTGLT 401
G+ L ++LS + D SL +A L +L+ L L + +++D G+ L S LT
Sbjct: 350 GMPELMRLDLSACHMHVGDISLYAIATLPNLQVLRLHSCERVSDMGIGGLCSGAAAAALT 409
Query: 402 HLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
HLD+ G RI+D+GA + R K L+ SLE C + D G++ + L L +L +
Sbjct: 410 HLDVRGCERISDAGATSIGRCLKQLQYLSLEHC-HLIGDRGIRTLSGLPHLEILRVGGTG 468
Query: 458 NLTD 461
TD
Sbjct: 469 ATTD 472
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 107/253 (42%), Gaps = 55/253 (21%)
Query: 42 PG---VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
PG V D + +AS + L SV LS + V +G L L+ L+ ++C +SD
Sbjct: 260 PGAAVVTDAGIAALASL-TLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTP 318
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ L L +L+ LS ++T + A G+ L++LDL C +H G
Sbjct: 319 VCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSAC-HMHVG---------- 367
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMI 216
D + ++ L NL+ L++ SC +V+D GI LCS
Sbjct: 368 ------------DISLYAIATLPNLQVLRLHSCERVSDMGIGG------------LCSG- 402
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQL-SDDGCEK 273
+ LT L++ GC ++ A S+ L L YL+L C L D G
Sbjct: 403 ----------AAAAALTHLDVRGCERISDAGATSIGRCLKQLQYLSLEHCHLIGDRGIRT 452
Query: 274 FSKIGSLKVLNLG 286
S + L++L +G
Sbjct: 453 LSGLPHLEILRVG 465
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 138/309 (44%), Gaps = 57/309 (18%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDM----KPLSGLTNLKSLQISC-----SKVTDS 195
H GL +L G+ +L +L++ I+D+ M + L+ L +L + +C + VTD+
Sbjct: 209 HAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLTRLIDLDLRRPACDNPGAAVVTDA 268
Query: 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGS 255
GIA L L++ + + + + + C L SL +L L L C DS
Sbjct: 269 GIAALASLTLLESVRLSQAQVGQAGC--AALASLPRLRCLELSYC-------DS------ 313
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHL-KGLTNLESLNLDSC- 312
LSD + +++ L L+L G +TD + L +G+ L L+L +C
Sbjct: 314 ----------LSDTPVCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACH 363
Query: 313 -GIGDEGLVNLTGLCNLKCLELSDTQ----VGSSGLRHLSGLTNLESINLSFTG---ISD 364
+GD L + L NL+ L L + +G GL SG +L G ISD
Sbjct: 364 MHVGDISLYAIATLPNLQVLRLHSCERVSDMGIGGL--CSGAAAAALTHLDVRGCERISD 421
Query: 365 GSLRKLAG-LSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGA---AYLR 419
+ L L+ L+L+ I D G + +L+GL HL++ R+ +GA ++ +
Sbjct: 422 AGATSIGRCLKQLQYLSLEHCHLIGDRG---IRTLSGLPHLEIL--RVGGTGATTDSFAQ 476
Query: 420 NFKNLRSLE 428
+F LE
Sbjct: 477 DFTRRVRLE 485
>gi|85679230|gb|ABC72031.1| InlA [Listeria monocytogenes]
Length = 794
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 -NISPLAGLTALT 319
>gi|386042670|ref|YP_005961475.1| internalin [Listeria monocytogenes 10403S]
gi|404409572|ref|YP_006695160.1| internalin I [Listeria monocytogenes SLCC5850]
gi|345535904|gb|AEO05344.1| internalin [Listeria monocytogenes 10403S]
gi|404229398|emb|CBY50802.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC5850]
Length = 1778
Score = 71.6 bits (174), Expect = 8e-10, Method: Composition-based stats.
Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 89/471 (18%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI---SCSKVTDSGIAYLKGLS 204
L+ LN+ + D S + L L N+K+L++ + + + + YL+
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 205 ISSVIFI-----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
++++ + L ++ I+ L +L T L L + A+ L LG + L
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQL----IDASNCTDLETLGDISGL 343
Query: 260 N-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ L QLS GC K +I S LK L NL ++ DSC I D G
Sbjct: 344 SELEMIQLS--GCSKLKEITS------------------LKNLPNLVNITADSCAIEDLG 383
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLK 377
+N L L+ L LSD + L +++ +T+L + L+ G S+ L L L+
Sbjct: 384 TLN--NLPKLQTLVLSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLE 437
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L+L QIT ++ +T L L++LD+ +T G L+ L L + L+D
Sbjct: 438 KLDLKENQITS--ISEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD- 492
Query: 438 GVKHIKDLSSLTLLNLSQNC-------------------NLTDKTLELISGLTGLVSLNV 478
V + + SL +N+S N N + + +I + L ++
Sbjct: 493 -VSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDA 551
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+ IT+ G L L+SL + S ++T+ + DLP+L +F +
Sbjct: 552 SNNLITNIGT--FDNLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
Score = 52.0 bits (123), Expect = 7e-04, Method: Composition-based stats.
Identities = 125/484 (25%), Positives = 214/484 (44%), Gaps = 68/484 (14%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA 128
SG LK+ ++L++L I +E L L+NL +L N +T + A
Sbjct: 352 SGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLT--NITAIT 409
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L+ C G L L KLE L++K N IT + ++ L L L +S
Sbjct: 410 DLPQLKTLTLDGCGITSIG--TLDNLPKLEKLDLKE-NQITS--ISEITDLPRLSYLDVS 464
Query: 189 CSKVTDSG----IAYLKGLSISSVIFILCSMIIRLFCLHVF------LTSLQKLTLLNLE 238
+ +T G + L+ L++SS S + L+ + ++ K+T L
Sbjct: 465 VNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMT--ELP 522
Query: 239 GCPVTAACLDSLSALGSLFYL-NLNRCQLSDD---GCEKFSKIGSLKVLNLGFNEITDEC 294
A +S+S + + + NL + S++ F + L+ L++ N IT
Sbjct: 523 SLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTS 582
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++H L +LE+ N + I + G + L ++ + LS ++ S L + L NLE+
Sbjct: 583 VIH--DLPSLETFNAQANLITNIG--TMDNLPDITYVNLSFNRIPS--LAPIGDLPNLET 636
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARI 410
+ +S SL + G+ L+ L+L + TG L++L+ LT LT L+L
Sbjct: 637 LIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVY 696
Query: 411 TD--SGAAYLRN--FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
D SG + L + NL S I+D+S+L+ L Q L + +E
Sbjct: 697 IDDISGLSTLSRLIYLNLDS-------------NKIEDISALSNLTNLQELTLENNKIEN 743
Query: 467 ISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
IS L+ L +LN VS ++I + P+ N+ + VTA++ Q+ LP +
Sbjct: 744 ISALSDLENLNKLVVSKNKIID-----ISPVANMVN---RGAIVTASN----QTYTLPTV 791
Query: 524 VSFR 527
+S++
Sbjct: 792 LSYQ 795
Score = 41.6 bits (96), Expect = 1.2, Method: Composition-based stats.
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 30/207 (14%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
S + L L NL S+NLS ISD L L L +L SLNL + + T L+ + L L
Sbjct: 173 SNIEGLQYLENLTSLNLSENNISD--LAPLKDLVNLVSLNLSSNR-TLVNLSGVEDLVNL 229
Query: 401 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 446
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 230 QELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLT 289
Query: 447 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
+LT L NL N + K+LE ++G T L ++ SN L + L L
Sbjct: 290 NLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQLIDASNCTDLET-LGDISGLSELEM 348
Query: 500 LTLESCKVTANDIKRLQS-RDLPNLVS 525
+ L C + +K + S ++LPNLV+
Sbjct: 349 IQLSGC----SKLKEITSLKNLPNLVN 371
>gi|16802378|ref|NP_463863.1| hypothetical protein lmo0333 [Listeria monocytogenes EGD-e]
gi|386049260|ref|YP_005967251.1| internalin-I [Listeria monocytogenes FSL R2-561]
gi|404282763|ref|YP_006683660.1| internalin I [Listeria monocytogenes SLCC2372]
gi|405757319|ref|YP_006686595.1| internalin I [Listeria monocytogenes SLCC2479]
gi|81849931|sp|Q8YA32.1|INLI_LISMO RecName: Full=Internalin-I; Flags: Precursor
gi|16409711|emb|CAC98412.1| lmo0333 [Listeria monocytogenes EGD-e]
gi|346423106|gb|AEO24631.1| internalin-I [Listeria monocytogenes FSL R2-561]
gi|404232265|emb|CBY53668.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2372]
gi|404235201|emb|CBY56603.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2479]
Length = 1778
Score = 71.6 bits (174), Expect = 8e-10, Method: Composition-based stats.
Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 89/471 (18%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI---SCSKVTDSGIAYLKGLS 204
L+ LN+ + D S + L L N+K+L++ + + + + YL+
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 205 ISSVIFI-----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
++++ + L ++ I+ L +L T L L + A+ L LG + L
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQL----IDASNCTDLETLGDISGL 343
Query: 260 N-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ L QLS GC K +I S LK L NL ++ DSC I D G
Sbjct: 344 SELEMIQLS--GCSKLKEITS------------------LKNLPNLVNITADSCAIEDLG 383
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLK 377
+N L L+ L LSD + L +++ +T+L + L+ G S+ L L L+
Sbjct: 384 TLN--NLPKLQTLVLSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLE 437
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L+L QIT ++ +T L L++LD+ +T G L+ L L + L+D
Sbjct: 438 KLDLKENQITS--ISEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD- 492
Query: 438 GVKHIKDLSSLTLLNLSQNC-------------------NLTDKTLELISGLTGLVSLNV 478
V + + SL +N+S N N + + +I + L ++
Sbjct: 493 -VSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDA 551
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+ IT+ G L L+SL + S ++T+ + DLP+L +F +
Sbjct: 552 SNNLITNIGT--FDNLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
Score = 53.1 bits (126), Expect = 4e-04, Method: Composition-based stats.
Identities = 126/484 (26%), Positives = 214/484 (44%), Gaps = 68/484 (14%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA 128
SG LK+ ++L++L I +E L L+NL +L N +T + A
Sbjct: 352 SGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLT--NITAIT 409
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L+ C G L L KLE L++K N IT + ++ L L L +S
Sbjct: 410 DLPQLKTLTLDGCGITSIG--TLDNLPKLEKLDLKE-NQITS--ISEITDLPRLSYLDVS 464
Query: 189 CSKVTDSG----IAYLKGLSISSVIFILCSMIIRLFCLHVF------LTSLQKLTLLNLE 238
+ +T G + L+ L++SS S + L+ + ++ K+T L
Sbjct: 465 VNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMT--ELP 522
Query: 239 GCPVTAACLDSLSALGSLFYL-NLNRCQLSDD---GCEKFSKIGSLKVLNLGFNEITDEC 294
A +S+S + + + NL + S++ F + L+ L++ N IT
Sbjct: 523 SLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTS 582
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++H L +LE+ N + I + G + L +L + LS ++ S L + L NLE+
Sbjct: 583 VIH--DLPSLETFNAQTNLITNIG--TMDNLPDLTYVNLSFNRIPS--LAPIGDLPNLET 636
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARI 410
+ +S SL + G+ L+ L+L + TG L++L+ LT LT L+L
Sbjct: 637 LIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVY 696
Query: 411 TD--SGAAYLRN--FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
D SG + L + NL S I+D+S+L+ L Q L + +E
Sbjct: 697 IDDISGLSTLSRLIYLNLDS-------------NKIEDISALSNLTNLQELTLENNKIEN 743
Query: 467 ISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
IS L+ L +LN VS ++I + P+ N+ + VTA++ Q+ LP +
Sbjct: 744 ISALSDLENLNKLVVSKNKIID-----ISPVANMVN---RGAIVTASN----QTYTLPTV 791
Query: 524 VSFR 527
+S++
Sbjct: 792 LSYQ 795
Score = 41.6 bits (96), Expect = 1.2, Method: Composition-based stats.
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 30/207 (14%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
S + L L NL S+NLS ISD L L L +L SLNL + + T L+ + L L
Sbjct: 173 SNIEGLQYLENLTSLNLSENNISD--LAPLKDLVNLVSLNLSSNR-TLVNLSGVEDLVNL 229
Query: 401 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 446
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 230 QELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLT 289
Query: 447 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
+LT L NL N + K+LE ++G T L ++ SN L + L L
Sbjct: 290 NLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQLIDASNCTDLET-LGDISGLSELEM 348
Query: 500 LTLESCKVTANDIKRLQS-RDLPNLVS 525
+ L C + +K + S ++LPNLV+
Sbjct: 349 IQLSGC----SKLKEITSLKNLPNLVN 371
>gi|430743420|ref|YP_007202549.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
gi|430015140|gb|AGA26854.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
Length = 356
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 29/227 (12%)
Query: 239 GCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLV 296
G T A + + L L L+ +L++ G + L++++L +T + L+
Sbjct: 117 GSQATNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLI 176
Query: 297 HLKGLTNLESLNLDSC-------------------------GIGDEGLVNLTGLCNLKCL 331
HL LT+LE LNL S GI DEGL NL GL L+ L
Sbjct: 177 HLAELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELREL 236
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
L ++QV +GL L G+ + + L + + +L L ++ LKSL + + D GL
Sbjct: 237 ILRNSQVTGTGLTALQGMIAMADLKLINSHLE--TLEPLQRMTGLKSLWIHRSPLDDRGL 294
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
+ +L L +L L RITD G L + + LR ++ G G+T G
Sbjct: 295 KHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGVTIMG 341
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 4/195 (2%)
Query: 224 VFLTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
V L SL +L +++L P VT L L+ L SL LNL+ D +
Sbjct: 151 VHLQSLTRLRMVDLSLLPGVTGKGLIHLAELTSLERLNLSSPVADADLVNLSRLTNLRLL 210
Query: 283 LNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
G N ITDE L +LKGLT L L L + + GL L G+ + L+L ++ + +
Sbjct: 211 RLNGGGNGITDEGLANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLINSHLET- 269
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
L L +T L+S+ + + + D L+ + L SL+ L+L+ +ITD GL +L L GL
Sbjct: 270 -LEPLQRMTGLKSLWIHRSPLDDRGLKHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLR 328
Query: 402 HLDLFGARITDSGAA 416
+D G +T G+A
Sbjct: 329 EVDARGTGVTIMGSA 343
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 128/245 (52%), Gaps = 37/245 (15%)
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLEL 333
GS+K +LG ++ T+ + H+ L+ LE LD+ G + + GLV+L L L+ ++L
Sbjct: 108 FGSVKQASLG-SQATNATMSHVGRLSQLE--ELDATGGSKLTNAGLVHLQSLTRLRMVDL 164
Query: 334 SD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--DARQITDTG 390
S V GL HL+ LT+LE +NLS + ++D L L+ L++L+ L L ITD G
Sbjct: 165 SLLPGVTGKGLIHLAELTSLERLNLS-SPVADADLVNLSRLTNLRLLRLNGGGNGITDEG 223
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
LA L LT L L L +++T +G L+ + L++
Sbjct: 224 LANLKGLTELRELILRNSQVTGTGLTALQGMIAMADLKLI-------------------- 263
Query: 451 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
N +L +TLE + +TGL SL + S + GL+H++ LK+L+ L+LE ++T +
Sbjct: 264 -----NSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGLKHVENLKSLQYLSLEDTRITDD 316
Query: 511 DIKRL 515
+K L
Sbjct: 317 GLKSL 321
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 37/211 (17%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS +T++GL+HL+ + L+ +D + ++ GL HL L++L L+
Sbjct: 142 GSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAELTSLERLNL--------SSPV 193
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A A L+NL +L R R++GG N ITD + L GLT L+ L
Sbjct: 194 ADADLVNLSRLTNLRLLRLNGG-----------------GNGITDEGLANLKGLTELREL 236
Query: 186 QISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLN---LEGCP 241
+ S+VT +G+ L+G+ + ++L H+ L LQ++T L + P
Sbjct: 237 ILRNSQVTGTGLTALQGM--------IAMADLKLINSHLETLEPLQRMTGLKSLWIHRSP 288
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
+ L + L SL YL+L +++DDG +
Sbjct: 289 LDDRGLKHVENLKSLQYLSLEDTRITDDGLK 319
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 123/275 (44%), Gaps = 56/275 (20%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS T++ + H+ S L+ LD ++++ GL HL+ L+ L + +T +G
Sbjct: 117 GSQATNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKG-- 174
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L++L L LE LN+ + + D+D+ LS LTNL+ L
Sbjct: 175 ----------------------LIHLAELTSLERLNL--SSPVADADLVNLSRLTNLRLL 210
Query: 186 QI--SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
++ + +TD G+A LKG LT L++L L N + VT
Sbjct: 211 RLNGGGNGITDEGLANLKG-----------------------LTELRELILRNSQ---VT 244
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
L +L + ++ L L L + E ++ LK L + + + D L H++ L +
Sbjct: 245 GTGLTALQGMIAMADLKLINSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGLKHVENLKS 302
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
L+ L+L+ I D+GL +L L L+ ++ T V
Sbjct: 303 LQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337
>gi|284800621|ref|YP_003412486.1| hypothetical protein LM5578_0368 [Listeria monocytogenes 08-5578]
gi|284993807|ref|YP_003415575.1| hypothetical protein LM5923_0367 [Listeria monocytogenes 08-5923]
gi|284056183|gb|ADB67124.1| hypothetical protein LM5578_0368 [Listeria monocytogenes 08-5578]
gi|284059274|gb|ADB70213.1| hypothetical protein LM5923_0367 [Listeria monocytogenes 08-5923]
Length = 1778
Score = 71.6 bits (174), Expect = 8e-10, Method: Composition-based stats.
Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 89/471 (18%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD-SDMKPLSGLT-------NLKSLQI---SCSKVTDSGIAYLKGLS 204
L+ LN+ + D S + L L N+K+L++ + + + + YL+
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 205 ISSVIFI-----LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
++++ + L ++ I+ L +L T L L + A+ L LG + L
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQL----IDASNCTDLETLGDISGL 343
Query: 260 N-LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ L QLS GC K +I S LK L NL ++ DSC I D G
Sbjct: 344 SELEMIQLS--GCSKLKEITS------------------LKNLPNLVNITADSCAIEDLG 383
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLK 377
+N L L+ L LSD + L +++ +T+L + L+ G S+ L L L+
Sbjct: 384 TLN--NLPKLQTLVLSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLE 437
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L+L QIT ++ +T L L++LD+ +T G L+ L L + L+D
Sbjct: 438 KLDLKENQITS--ISEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD- 492
Query: 438 GVKHIKDLSSLTLLNLSQNC-------------------NLTDKTLELISGLTGLVSLNV 478
V + + SL +N+S N N + + +I + L ++
Sbjct: 493 -VSTLTNFPSLNYINISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDA 551
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 529
SN+ IT+ G L L+SL + S ++T+ + DLP+L +F +
Sbjct: 552 SNNLITNIGT--FDNLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
Score = 53.1 bits (126), Expect = 4e-04, Method: Composition-based stats.
Identities = 126/484 (26%), Positives = 214/484 (44%), Gaps = 68/484 (14%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA 128
SG LK+ ++L++L I +E L L+NL +L N +T + A
Sbjct: 352 SGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLT--NITAIT 409
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L+ C G L L KLE L++K N IT + ++ L L L +S
Sbjct: 410 DLPQLKTLTLDGCGITSIG--TLDNLPKLEKLDLKE-NQITS--ISEITDLPRLSYLDVS 464
Query: 189 CSKVTDSG----IAYLKGLSISSVIFILCSMIIRLFCLHVF------LTSLQKLTLLNLE 238
+ +T G + L+ L++SS S + L+ + ++ K+T L
Sbjct: 465 VNNLTTIGDLKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTVGKMT--ELP 522
Query: 239 GCPVTAACLDSLSALGSLFYL-NLNRCQLSDD---GCEKFSKIGSLKVLNLGFNEITDEC 294
A +S+S + + + NL + S++ F + L+ L++ N IT
Sbjct: 523 SLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTS 582
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
++H L +LE+ N + I + G + L +L + LS ++ S L + L NLE+
Sbjct: 583 VIH--DLPSLETFNAQTNLITNIG--TMDNLPDLTYVNLSFNRIPS--LAPIGDLPNLET 636
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARI 410
+ +S SL + G+ L+ L+L + TG L++L+ LT LT L+L
Sbjct: 637 LIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVY 696
Query: 411 TD--SGAAYLRN--FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
D SG + L + NL S I+D+S+L+ L Q L + +E
Sbjct: 697 IDDISGLSTLSRLIYLNLDS-------------NKIEDISALSNLTNLQELTLENNKIEN 743
Query: 467 ISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
IS L+ L +LN VS ++I + P+ N+ + VTA++ Q+ LP +
Sbjct: 744 ISALSDLENLNKLVVSKNKIID-----ISPVANMVN---RGAIVTASN----QTYTLPTV 791
Query: 524 VSFR 527
+S++
Sbjct: 792 LSYQ 795
Score = 41.6 bits (96), Expect = 1.2, Method: Composition-based stats.
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 30/207 (14%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
S + L L NL S+NLS ISD L L L +L SLNL + + T L+ + L L
Sbjct: 173 SNIEGLQYLENLTSLNLSENNISD--LAPLKDLVNLVSLNLSSNR-TLVNLSGVEDLVNL 229
Query: 401 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 446
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 230 QELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLT 289
Query: 447 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
+LT L NL N + K+LE ++G T L ++ SN L + L L
Sbjct: 290 NLTSLAKLPKLKNLYIKGNASLKSLETLNGATKLQLIDASNCTDLET-LGDISGLSELEM 348
Query: 500 LTLESCKVTANDIKRLQS-RDLPNLVS 525
+ L C + +K + S ++LPNLV+
Sbjct: 349 IQLSGC----SKLKEITSLKNLPNLVN 371
>gi|112961610|gb|ABI28426.1| internalin A [Listeria monocytogenes]
gi|112961613|gb|ABI28428.1| internalin A [Listeria monocytogenes]
gi|112961625|gb|ABI28436.1| internalin A [Listeria monocytogenes]
gi|112961628|gb|ABI28438.1| internalin A [Listeria monocytogenes]
gi|112961631|gb|ABI28440.1| internalin A [Listeria monocytogenes]
gi|112961634|gb|ABI28442.1| internalin A [Listeria monocytogenes]
gi|112961670|gb|ABI28466.1| internalin A [Listeria monocytogenes]
gi|112961673|gb|ABI28468.1| internalin A [Listeria monocytogenes]
gi|112961676|gb|ABI28470.1| internalin A [Listeria monocytogenes]
gi|112961688|gb|ABI28478.1| internalin A [Listeria monocytogenes]
gi|112961703|gb|ABI28488.1| internalin A [Listeria monocytogenes]
gi|112961712|gb|ABI28494.1| internalin A [Listeria monocytogenes]
gi|112961715|gb|ABI28496.1| internalin A [Listeria monocytogenes]
gi|112961724|gb|ABI28502.1| internalin A [Listeria monocytogenes]
gi|112961733|gb|ABI28508.1| internalin A [Listeria monocytogenes]
gi|112961736|gb|ABI28510.1| internalin A [Listeria monocytogenes]
gi|112961739|gb|ABI28512.1| internalin A [Listeria monocytogenes]
gi|112961742|gb|ABI28514.1| internalin A [Listeria monocytogenes]
gi|112961745|gb|ABI28516.1| internalin A [Listeria monocytogenes]
gi|112961754|gb|ABI28522.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 43 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 95
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 96 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 150
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 151 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 208
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 209 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 259
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -NISPLAGLTALT 271
>gi|406833864|ref|ZP_11093458.1| hypothetical protein SpalD1_19557 [Schlesneria paludicola DSM
18645]
Length = 310
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 7/230 (3%)
Query: 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLN 260
++ V FI C + +F + L L+ L N + A L ++ L SL +N
Sbjct: 80 FRVNGVQFIDCKIPGEVFPVLASLNHLEHLDFYNSKIGDSRFGDAELKLMAGLKSLRSIN 139
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
+ Q++DDG ++ + L+ L L +ITD L HL L L L L + DEGL
Sbjct: 140 VVLSQVTDDGLKELESMDRLESLALSSTKITDAGLRHLLRLKKLSRLQLAQTAVSDEGLK 199
Query: 321 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
++ L +L L+L T++ GL+ L L LE ++L T IS+ L L L +L ++
Sbjct: 200 TISSLHSLSLLDLYGTRITDQGLKSLELLRKLEYLDLGGTAISNAGLAHLGVLPNLVTVG 259
Query: 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430
+ QI D+GL LTS++ L +L L A+ T G A R R+L C
Sbjct: 260 VRGTQIGDSGLEQLTSISSLRYLYLNMAQTTKEGRADFR-----RALPKC 304
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 23/248 (9%)
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
R+F + L ++ + C + L++L L +L+ ++ D S+
Sbjct: 68 RVFPYALPLPVFFRVNGVQFIDCKIPGEVFPVLASLNHLEHLDFYNSKIGD------SRF 121
Query: 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
G D L + GL +L S+N+ + D+GL L + L+ L LS T+
Sbjct: 122 G-------------DAELKLMAGLKSLRSINVVLSQVTDDGLKELESMDRLESLALSSTK 168
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
+ +GLRHL L L + L+ T +SD L+ ++ L SL L+L +ITD GL +L L
Sbjct: 169 ITDAGLRHLLRLKKLSRLQLAQTAVSDEGLKTISSLHSLSLLDLYGTRITDQGLKSLELL 228
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
L +LDL G I+++G A+L NL ++ + G + D+G++ + +SSL L L
Sbjct: 229 RKLEYLDLGGTAISNAGLAHLGVLPNLVTVGVRGTQIGDSGLEQLTSISSLRYLYL---- 284
Query: 458 NLTDKTLE 465
N+ T E
Sbjct: 285 NMAQTTKE 292
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 9/211 (4%)
Query: 312 CGIGDEGLVNLTGLCNLKCLE-----LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
C I E L L +L+ L+ + D++ G + L+ ++GL +L SIN+ + ++D
Sbjct: 90 CKIPGEVFPVLASLNHLEHLDFYNSKIGDSRFGDAELKLMAGLKSLRSINVVLSQVTDDG 149
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
L++L + L+SL L + +ITD GL L L L+ L L ++D G + + +L
Sbjct: 150 LKELESMDRLESLALSSTKITDAGLRHLLRLKKLSRLQLAQTAVSDEGLKTISSLHSLSL 209
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486
L++ G +TD G+K ++ L L L+L +++ L + L LV++ V ++I +
Sbjct: 210 LDLYGTRITDQGLKSLELLRKLEYLDLG-GTAISNAGLAHLGVLPNLVTVGVRGTQIGDS 268
Query: 487 GLRHLKPLKNLRSLTLESCKVTAN---DIKR 514
GL L + +LR L L + T D +R
Sbjct: 269 GLEQLTSISSLRYLYLNMAQTTKEGRADFRR 299
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 26/191 (13%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
D+++K ++GL +L+S+ + S+VTD G+ L+ S+
Sbjct: 123 DAELKLMAGLKSLRSINVVLSQVTDDGLKELE--------------------------SM 156
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
+L L L +T A L L L L L L + +SD+G + S + SL +L+L
Sbjct: 157 DRLESLALSSTKITDAGLRHLLRLKKLSRLQLAQTAVSDEGLKTISSLHSLSLLDLYGTR 216
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
ITD+ L L+ L LE L+L I + GL +L L NL + + TQ+G SGL L+ +
Sbjct: 217 ITDQGLKSLELLRKLEYLDLGGTAISNAGLAHLGVLPNLVTVGVRGTQIGDSGLEQLTSI 276
Query: 350 TNLESINLSFT 360
++L + L+
Sbjct: 277 SSLRYLYLNMA 287
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K AGL +L +++ GL L+ + +LESL + ITD+ ++ L L L
Sbjct: 126 LKLMAGLKSLRSINVVLSQVTDDGLKELESMDRLESLALS-STKITDAGLRHLLRLKKLS 184
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
LQ++ + V+D G+ + L S++ + + I + L L+KL L+L G ++
Sbjct: 185 RLQLAQTAVSDEGLKTISSLHSLSLLDLYGTRITDQGLKSLEL--LRKLEYLDLGGTAIS 242
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
A L L L +L + + Q+ D G E+ + I SL+ L L + T E
Sbjct: 243 NAGLAHLGVLPNLVTVGVRGTQIGDSGLEQLTSISSLRYLYLNMAQTTKE 292
>gi|219821369|gb|ACL37824.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|292610040|ref|XP_690098.4| PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like
[Danio rerio]
Length = 950
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 162/354 (45%), Gaps = 59/354 (16%)
Query: 206 SSVIFIL-CSMIIRLFCLHVFLTSLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLN 262
S+V+FIL S + F L +LT + T P V L + A S +N
Sbjct: 600 SAVVFILLTSEQLDEFNLRRYLTDSEHQTQTQKLQTPDEVLQKLLSVVEASRSAVLIN-- 657
Query: 263 RCQLSDDGCEKF-----SKIGSLKVLNLGFNEITDECLVHLK-GLTN----LESLNLDSC 312
C +SD+GC SK +L+ LNL N++ D + L GL + LE L L C
Sbjct: 658 -CGVSDEGCAALASVLRSKSSNLRELNLSENKVGDSGVKRLSAGLKDPHCKLEKLRLRCC 716
Query: 313 GIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLS-GLTN----LESINLSFTGI 362
G+ DEG L + NL+ L+LS +VG SG++ LS GL + LE + L G+
Sbjct: 717 GVSDEGCAALASVLKSNSSNLRELDLSWNKVGDSGVKLLSAGLKDPHCKLEKLRLCRCGV 776
Query: 363 SDG-----SLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDS 413
SD + S+L+ LNL ++ D+G+ A L + L L LF ++D
Sbjct: 777 SDEGCAALVSVLSSNSSNLRELNLTENKVGDSGVKLLSAGLKENSKLEKLWLFICGVSDE 836
Query: 414 GAAYL-----RNFKNLRSLEICGGGLTDAGVK---------HIKDLSSLTLLNLSQNCNL 459
G A L N NLR L++ G + D+GVK H K L LTL C +
Sbjct: 837 GCAALASILRSNSSNLRELDLTGNKVGDSGVKLLSAGLKDPHCK-LEKLTL----DFCGV 891
Query: 460 TDK-----TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
+D+ L S + L LN+ N+ + +G++ L L++ LE+ ++
Sbjct: 892 SDEGCAALASALRSNSSNLRELNLFNNNLGVSGVKLLSDLRDDPHYKLETLHIS 945
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 20/119 (16%)
Query: 264 CQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHLK-GLTN----LESLNLDSCG 313
C +SD+GC + I +L+ L+L N++ D + L GL + LE L LD CG
Sbjct: 831 CGVSDEGCAALASILRSNSSNLRELDLTGNKVGDSGVKLLSAGLKDPHCKLEKLTLDFCG 890
Query: 314 IGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGLTN-----LESINLSFTGI 362
+ DEG L NL+ L L + +G SG++ LS L + LE++++S+ I
Sbjct: 891 VSDEGCAALASALRSNSSNLRELNLFNNNLGVSGVKLLSDLRDDPHYKLETLHISWGFI 949
>gi|22347570|gb|AAM95930.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLASLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 141
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 142 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 197
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 198 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 252
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -----NISPLAGLTALT 264
>gi|428303964|ref|YP_007140789.1| hypothetical protein Cri9333_0293 [Crinalium epipsammum PCC 9333]
gi|428245499|gb|AFZ11279.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 409
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 138/260 (53%), Gaps = 23/260 (8%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
+ +L+ LT+L L+G ++ L+ L +L L L+ Q+SD + + + +L VL L
Sbjct: 159 IQALRNLTILRLDGNKISDVT--PLAGLTNLRNLRLDHSQISD--VKPLTGLTNLSVLYL 214
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N+I+D + L GL NL L LD I D + L GL NL+ L L Q+ S ++
Sbjct: 215 NKNQISD--VTPLAGLINLRDLRLDQNQISD--VTPLAGLINLRGLGLDQNQI--SDVKP 268
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L G NL ++ L+ + + L L++L L L +I+D + LT+LT LT L+L
Sbjct: 269 LFGFVNLTTLYLN----DNSDVTPLFSLANLTVLTLYDNKISD--VKPLTALTNLTVLEL 322
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
+I+D L + L L + ++D V+ + L+ LT L LSQN ++D ++
Sbjct: 323 DQNQISD--VKPLASLARLTRLSLNDNQISD--VEPLAGLAKLTSLRLSQN-QISD--VK 375
Query: 466 LISGLTGLVSLNVSNSRITS 485
++GLT L L +S++ I++
Sbjct: 376 PLTGLTNLSGLGLSDNPISN 395
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 150/324 (46%), Gaps = 59/324 (18%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++ DS + L+ ++ LD N +I+ LE ++ L NLT L N +
Sbjct: 128 EIPDSKRLTLEVLQGIKVLDANNA-EIT--SLEGIQALRNLTILRLDGNKI---SDVTPL 181
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL NL L L+ H + ++K L L +L++ + N SD+ PL+GL NL+ L++
Sbjct: 182 AGLTNLRNLRLD-----HSQISDVKPLTGLTNLSVLYLNKNQISDVTPLAGLINLRDLRL 236
Query: 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
++++D + L G L+NL G +
Sbjct: 237 DQNQISD--VTPLAG-------------------------------LINLRGLGLDQ--- 260
Query: 248 DSLSALGSLF-YLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
+ +S + LF ++NL L+D D FS + +L VL L N+I+D + L LTNL
Sbjct: 261 NQISDVKPLFGFVNLTTLYLNDNSDVTPLFS-LANLTVLTLYDNKISD--VKPLTALTNL 317
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L LD I D + L L L L L+D Q+ S + L+GL L S+ LS ISD
Sbjct: 318 TVLELDQNQISD--VKPLASLARLTRLSLNDNQI--SDVEPLAGLAKLTSLRLSQNQISD 373
Query: 365 GSLRKLAGLSSLKSLNLDARQITD 388
++ L GL++L L L I++
Sbjct: 374 --VKPLTGLTNLSGLGLSDNPISN 395
>gi|219821297|gb|ACL37776.1| internalin A [Listeria monocytogenes]
gi|219821303|gb|ACL37780.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|260788598|ref|XP_002589336.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
gi|229274513|gb|EEN45347.1| hypothetical protein BRAFLDRAFT_77788 [Branchiostoma floridae]
Length = 1470
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 116/233 (49%), Gaps = 21/233 (9%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGS---LK 281
L S QKL +NL ++ D L L SL ++L+ +SD+ ++ +GS LK
Sbjct: 1144 LGSCQKLKKVNLSHNKLSGRG-DFLPPLPSLEEIDLSYNAISDEAVPGLAEGLGSCQNLK 1202
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE---GLVNLTGLC-NLKCLELSDTQ 337
+NL N+++D L L NLE ++L I DE GL G C NLK ++LS +
Sbjct: 1203 KVNLSHNKLSDRGDF-LPPLPNLEEIDLSHNIISDEAVPGLAGSLGSCQNLKKVDLSHNK 1261
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSS---LKSLNLDARQITDTG--L 391
+ G L L NLE I+LS+ I D + LA GL S LK +NL +++D G
Sbjct: 1262 LSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPGLAEGLGSCQKLKKVNLSHNKLSDVGELT 1320
Query: 392 AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVK 440
AA L LTH+D++ +D AA+L+ + + + G + GV+
Sbjct: 1321 AAFIDLPFLTHVDIYNNSFSDESLPTIAAWLKVRTEVERVWMRGNRFSAEGVR 1373
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 133/305 (43%), Gaps = 46/305 (15%)
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 259
LK S+ S++ + MI L L S +++ E P A L S L +
Sbjct: 1100 LKDWSLDSIMRLSTQMIQHLSLLEEIDLSH---NVISDEAVPSLAEGLGSCQKLKKV--- 1153
Query: 260 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319
NL+ +LS G + + SL+ ++L +N I+DE + GL
Sbjct: 1154 NLSHNKLSGRG-DFLPPLPSLEEIDLSYNAISDEAVP---------------------GL 1191
Query: 320 VNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG----LS 374
G C NLK + LS ++ G L L NLE I+LS ISD ++ LAG
Sbjct: 1192 AEGLGSCQNLKKVNLSHNKLSDRG-DFLPPLPNLEEIDLSHNIISDEAVPGLAGSLGSCQ 1250
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEIC 430
+LK ++L +++D G L L L +DL I D A L + + L+ + +
Sbjct: 1251 NLKKVDLSHNKLSDRG-HFLPPLPNLEEIDLSYNAIGDEAEPGLAEGLGSCQKLKKVNLS 1309
Query: 431 GGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSRIT 484
L+D G DL LT +++ N + +D++L I+ T + + + +R +
Sbjct: 1310 HNKLSDVGELTAAFIDLPFLTHVDIYNN-SFSDESLPTIAAWLKVRTEVERVWMRGNRFS 1368
Query: 485 SAGLR 489
+ G+R
Sbjct: 1369 AEGVR 1373
>gi|195029827|ref|XP_001987773.1| GH22100 [Drosophila grimshawi]
gi|193903773|gb|EDW02640.1| GH22100 [Drosophila grimshawi]
Length = 550
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 156/298 (52%), Gaps = 28/298 (9%)
Query: 232 LTLLNLEGCPVTAACLDSLSA----LGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNL 285
LT LNL GC A ++ A L +L L+L+ C Q++D + ++ + +L+ L L
Sbjct: 248 LTSLNLSGC-FNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLEL 306
Query: 286 G--FNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLTGLC--------NLKCLELS 334
G N L+ GL L LNL SC I D+G+ +L G L+ L L
Sbjct: 307 GGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFLGLQ 366
Query: 335 DTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 390
D Q + L H++ GLT+L+SINLSF ++D L+ LA + L+ LNL + I+D G
Sbjct: 367 DCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIG 426
Query: 391 LAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLS 446
+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+ I K L
Sbjct: 427 MAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHITDQGMLKIAKSLH 486
Query: 447 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
L LN+ Q +TDK L+ L L+ L ++++ ++++S G+ + L L+ L L
Sbjct: 487 ELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 544
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 164/354 (46%), Gaps = 60/354 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 224 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 275
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
++L++ C ITD+ + ++ L NL++L++ C +T++G+ +
Sbjct: 276 KTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAW------------- 322
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSL--FYLNLNRCQ- 265
L+KL LNL C + A +A G+L +L L CQ
Sbjct: 323 ------------GLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQR 370
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 371 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 430
Query: 323 T-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKS 378
T G + CL++S ++ L H++ GL L S++L+ I+D + K+A L L++
Sbjct: 431 TEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHITDQGMLKIAKSLHELEN 490
Query: 379 LNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 429
LN+ +ITD GL L L+ L +DL+G +++ G + L+ L +
Sbjct: 491 LNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 544
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 141/324 (43%), Gaps = 75/324 (23%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +++L G ++T++GL+ + L+ L+ C ISD G+ H
Sbjct: 286 ITDTSLGRIAQHLKNLETLELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGH 345
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLES 159
L G S T+ G + L L L+ C R+ + +GL L+S
Sbjct: 346 LAGFSRETA-----------------EGNLQLEFLGLQDCQRLSDEALGHIAQGLTSLKS 388
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMI 216
+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G I+ + C I
Sbjct: 389 INLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDVSFCDKI 448
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
S Q LT + L L L+LN+C ++D G K +
Sbjct: 449 -----------SDQALTHIA--------------QGLFRLRSLSLNQCHITDQGMLKIA- 482
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELS 334
K L LE+LN+ C I D+GL L L NLK ++L
Sbjct: 483 ----------------------KSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLY 520
Query: 335 D-TQVGSSGLRHLSGLTNLESINL 357
TQ+ S G+ + L L+ +NL
Sbjct: 521 GCTQLSSKGIDIIMKLPKLQKLNL 544
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 244 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLE 302
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 401
LE N++ TG+ L GL L+ LNL + I+D G+ L + G
Sbjct: 303 TLELGGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNL 358
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 359 QLEFLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 417
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ L+VS +I+ L H+ + L LRSL+L C +T
Sbjct: 418 SCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHIT 474
>gi|22347566|gb|AAM95928.1| internalin A precursor [Listeria monocytogenes]
Length = 746
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|320163976|gb|EFW40875.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 1378
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 147/354 (41%), Gaps = 24/354 (6%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR----LFC 221
N IT+ +GLT L+ + ++ +++ GLS + + + ++I LF
Sbjct: 69 NLITNIPASAFTGLTALQVIYLTSNQIVSISSGAFSGLSALTYVSLFNNLITSIPDSLFA 128
Query: 222 ---------LH---------VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
LH T L LT L+L G +T+ ++ S L +L L L
Sbjct: 129 DLTALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLALYD 188
Query: 264 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 323
QL+ + F+ + +L L L NEIT L L L+LDS I D T
Sbjct: 189 NQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITDISANAFT 248
Query: 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383
GL L L LS Q+ S +GL+ L+S+ L I+ + GL +L SL L +
Sbjct: 249 GLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPALTSLYLQS 308
Query: 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHI 442
IT T+LT L L L +IT A A+ + L L++ +T
Sbjct: 309 NLITSIPPFVFTNLTALQILVLAYNQITGIPANAFTADLAALNYLDVSENQVTSIPANAF 368
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
L SL+ L L N +T GLT L L +S++ T+ K L N
Sbjct: 369 AGLHSLSSLFLQGN-QITSILTSTFQGLTALTHLILSDNPFTTLPPGLFKGLPN 421
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 7/247 (2%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNL 322
+++ F+ + +L+V+ L N+I GL+ L ++L + I D +L
Sbjct: 71 ITNIPASAFTGLTALQVIYLTSNQIVSISSGAFSGLSALTYVSLFNNLITSIPDSLFADL 130
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
T L L L + S +GL L ++L I+ S + L +L +L L
Sbjct: 131 TALTYLG---LHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTTLALY 187
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
Q+T A T L+ LT L L+ IT A + L L + +TD
Sbjct: 188 DNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSNRITDISANAF 247
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L++L +L LS N L+ + +GL+GL SL + N+ ITS + L L SL L
Sbjct: 248 TGLTALNILYLSHN-QLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTGLPALTSLYL 306
Query: 503 ESCKVTA 509
+S +T+
Sbjct: 307 QSNLITS 313
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 3/243 (1%)
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L L N IT+ GLT L+ + L S I +GL L + L + + S
Sbjct: 64 LYLQSNLITNIPASAFTGLTALQVIYLTSNQIVSISSGAFSGLSALTYVSLFNNLITSIP 123
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+ LT L + L I+ + GL+ L L+L QIT A ++L LT
Sbjct: 124 DSLFADLTALTYLGLHGNLITSMAATAFTGLNVLTRLSLYGNQITSISANAFSNLPALTT 183
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L L+ ++T A L L + +T L +L +L+L N +TD
Sbjct: 184 LALYDNQLTSIPADAFTGLSALTELTLYDNEITSISANSFTSLPALIILSLDSN-RITDI 242
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 522
+ +GLT L L +S+++++S L L SLTL + ++T+ + LP
Sbjct: 243 SANAFTGLTALNILYLSHNQLSSISANAFTGLSGLDSLTLFNNEITSIHVDAFTG--LPA 300
Query: 523 LVS 525
L S
Sbjct: 301 LTS 303
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 3/172 (1%)
Query: 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
YL N Q++ F+ + +L +L + N+IT GLT + LNL +
Sbjct: 543 YLQAN--QITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASI 600
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377
+ GL LK L+LS+ ++ +GLT L + L+ I+ S L +L
Sbjct: 601 PASAIAGLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALA 660
Query: 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
+ L A IT A +T LT+LDL RIT A + L +L +
Sbjct: 661 FVWLRANWITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLTL 711
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 5/167 (2%)
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
T + +S LS LT L N T I + GL+++ LNL + +A+
Sbjct: 550 TSIPASAFAGLSALTILIMFNNKITSIDTDAFT---GLTAMSQLNLQDNNLASIPASAIA 606
Query: 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
LT L LDL +ITD ++ L L + +T L +L + L
Sbjct: 607 GLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRA 666
Query: 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
N +T + +G+T L L++ N+RITS L L +LTL
Sbjct: 667 NW-ITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLTL 711
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 2/175 (1%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
GL L L + + ++ S +GLT + +NL ++ +AGL++LK L+L
Sbjct: 557 FAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIAGLTALKFLDL 616
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
+ITD + T LT L +L L RIT A + L + + +T
Sbjct: 617 SNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANWITAISANA 676
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 496
+ +LT L+L QN +T + LT L +L ++++ T+ K L N
Sbjct: 677 FAGV-TLTYLDL-QNNRITSIPANAFTSLTALNTLTLNDNPFTTLPPGLFKGLPN 729
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 165/434 (38%), Gaps = 41/434 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q+S GLS L SL+ NN IT+ + AF GL L L L+
Sbjct: 262 QLSSISANAFTGLSGLDSLTLF-NNEITSIHVDAFTGLPALTSLYLQSNLITSIPPFVFT 320
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211
L L+ L + + N IT + L L L +S ++VT GL S +F+
Sbjct: 321 NLTALQILVLAY-NQITGIPANAFTADLAALNYLDVSENQVTSIPANAFAGLHSLSSLFL 379
Query: 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG--------SLFYLNLNR 263
+ I + L L LT L L P T L +L Y++ N
Sbjct: 380 QGNQITSI--LTSTFQGLTALTHLILSDNPFTTLPPGLFKGLPNGLILSPPTLLYMSPNN 437
Query: 264 CQLSDDGCEKFSKIGSLK-------VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
++ S GS V + +D C + S+ C
Sbjct: 438 FTFGENTVAPPSTYGSASEPYQCDTVCGTCYAAGSDACCPSNCLICTSSSV----CTQCS 493
Query: 317 EGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
EG + ++G C + C G+ GL SG T ++ N S T I A S+
Sbjct: 494 EGAMMVSGSCVSHAC--------GAGGLCTCSG-TTVDCQNRSLTVIPS------AMPSN 538
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
++ L A QIT +A L+ LT L +F +IT + L + L
Sbjct: 539 TLTVYLQANQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLA 598
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
I L++L L+LS N +TD + +GLT L L ++++RITS L
Sbjct: 599 SIPASAIAGLTALKFLDLSNN-KITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLP 657
Query: 496 NLRSLTLESCKVTA 509
L + L + +TA
Sbjct: 658 ALAFVWLRANWITA 671
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 2/198 (1%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N+IT GL+ L L + + I TGL + L L D + S ++
Sbjct: 547 NQITSIPASAFAGLSALTILIMFNNKITSIDTDAFTGLTAMSQLNLQDNNLASIPASAIA 606
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
GLT L+ ++LS I+D S + GL++L L L++ +IT A TSL L + L
Sbjct: 607 GLTALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRA 666
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
IT A L L++ +T L++L L L+ N T L
Sbjct: 667 NWITAISANAFAGVT-LTYLDLQNNRITSIPANAFTSLTALNTLTLNDN-PFTTLPPGLF 724
Query: 468 SGLTGLVSLNVSNSRITS 485
GL + L+V+ S+ S
Sbjct: 725 KGLPNGMVLSVAFSQYLS 742
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 4/164 (2%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+ A+ LSAL L N + D F+ + ++ LNL N + + GL
Sbjct: 552 IPASAFAGLSALTILIMFNNKITSIDTDA---FTGLTAMSQLNLQDNNLASIPASAIAGL 608
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T L+ L+L + I D TGL L L L+ ++ S + L L + L
Sbjct: 609 TALKFLDLSNNKITDISSSEFTGLTALNYLWLNSNRITSISANAFTSLPALAFVWLRANW 668
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
I+ S AG+ +L L+L +IT A TSLT L L L
Sbjct: 669 ITAISANAFAGV-TLTYLDLQNNRITSIPANAFTSLTALNTLTL 711
>gi|71912408|gb|AAZ53236.1| InlA [Listeria monocytogenes]
Length = 800
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|219821333|gb|ACL37800.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--INPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821282|gb|ACL37766.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + +L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISSLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 132/274 (48%), Gaps = 39/274 (14%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 S----AG-------------LRHLKPLKNLRSLT 501
+ AG L + P+ NL++LT
Sbjct: 251 NISSLAGLTALTNLELNENQLEDISPISNLKNLT 284
>gi|18568227|gb|AAL75968.1|AF467464_1 PPA [Gallus gallus]
Length = 188
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 16/189 (8%)
Query: 330 CLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQI 386
C +LSD L+HL+ GL L +NLSF G ISD L L+ +SSL+SLNL + I
Sbjct: 6 CQKLSDLS-----LKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNI 60
Query: 387 TDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KH 441
+DTG+ A+ SL L+ LD+ F ++ D AY+ + LRSL +C ++D G+ +
Sbjct: 61 SDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 119
Query: 442 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 499
++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L +
Sbjct: 120 VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCPKV 179
Query: 500 LTLESCKVT 508
L L ++T
Sbjct: 180 LNLGLWQMT 188
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 11/167 (6%)
Query: 259 LNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GI 314
L L CQ LSD + ++ +G L+ LNL F I+D L+HL +++L SLNL SC I
Sbjct: 1 LTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNI 60
Query: 315 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISD-GSLRKL 370
D G+++L G L L++S +VG L +++ GL L S++L ISD G R +
Sbjct: 61 SDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMV 120
Query: 371 AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSG 414
+ L++LN+ +ITD GL + L+ LT +DL+G RIT G
Sbjct: 121 RQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRG 167
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 61/232 (26%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++D L HL + L+ L+ +FC ISD GL HL +S+L SL+ R + I+ G+
Sbjct: 9 LSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHL 68
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
A G ++L L++ +C+ + D + ++ GL L+SL
Sbjct: 69 A-----------------------MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLS 105
Query: 187 ISCSKVTDSGIAY-------LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEG 239
+ ++D GI L+ L+I + I L + L +LT ++L G
Sbjct: 106 LCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKG------LELIAEHLSQLTGIDLYG 159
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
C +++ G E+ +++ KVLNLG ++T
Sbjct: 160 CT-----------------------RITKRGLERITQLPCPKVLNLGLWQMT 188
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 419 RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVS 475
R LR L + CGG ++DAG+ H+ +SSL LNL N++D + L G L
Sbjct: 19 RGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSG 77
Query: 476 LNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 515
L+VS ++ L ++ + L LRSL+L SC ++ I R+
Sbjct: 78 LDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRM 119
>gi|313485044|gb|ADR52997.1| InlA [Listeria monocytogenes]
Length = 771
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|112959500|gb|ABI27277.1| internalin A [Listeria monocytogenes]
gi|112959502|gb|ABI27278.1| internalin A [Listeria monocytogenes]
gi|112959510|gb|ABI27282.1| internalin A [Listeria monocytogenes]
gi|112959512|gb|ABI27283.1| internalin A [Listeria monocytogenes]
gi|112959524|gb|ABI27289.1| internalin A [Listeria monocytogenes]
gi|112959530|gb|ABI27292.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 29 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 81
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 82 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 136
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 137 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 194
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 195 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 245
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -NISPLAGLTALT 257
>gi|22347552|gb|AAM95921.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|219821390|gb|ACL37838.1| internalin A [Listeria monocytogenes]
Length = 744
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|371942076|gb|AEX60850.1| internaline [Listeria monocytogenes]
gi|371942078|gb|AEX60851.1| internaline [Listeria monocytogenes]
gi|371942082|gb|AEX60853.1| internaline [Listeria monocytogenes]
Length = 789
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|386333501|ref|YP_006029671.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334195950|gb|AEG69135.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 462
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 129/282 (45%), Gaps = 11/282 (3%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L++L L EG P+TA + L AL L L+++ C L+ D + +L LNL N
Sbjct: 146 LRELDLSLCEG-PITAVGIAHLLAL-PLDRLDVSGCGLNADSARLLAGHATLTALNLRRN 203
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I D + L +LN+ GIG G+ L + L++SD ++G G R L+
Sbjct: 204 AIGDAGVAAFARNKKLTTLNVSGNGIGPAGVRALAANTTITTLDISDNEIGDEGARALAS 263
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
L ++ S GI + LA ++L SL+L +I G+ AL T L L G
Sbjct: 264 NAALTRLDASDCGIGPDGTQALATSTTLTSLDLSYNEIEAEGVEALGRNTTLRTLHACGN 323
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+ A L L L + + +AG + ++L LNLS N +E +
Sbjct: 324 ELGHREAELLAASTTLTVLNLSSNAIGNAGARAFGANTTLAELNLSNNG------IERVP 377
Query: 469 GL--TG-LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507
TG L +L++SN+RI A + L + L +L + S ++
Sbjct: 378 AWADTGKLTTLDLSNNRIGDAAAQVLAASRTLTTLNVGSNRI 419
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 136/332 (40%), Gaps = 25/332 (7%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
GG+ + L+ L + TD+D++ L L + +T GIA+L L +
Sbjct: 114 GGIPSPDDYPALQKLTL--IGPFTDADLQRLPPYLRELDLSLCEGPITAVGIAHLLALPL 171
Query: 206 SSVIFILCSM---IIRLFCLHVFLTSL------------------QKLTLLNLEGCPVTA 244
+ C + RL H LT+L +KLT LN+ G +
Sbjct: 172 DRLDVSGCGLNADSARLLAGHATLTALNLRRNAIGDAGVAAFARNKKLTTLNVSGNGIGP 231
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
A + +L+A ++ L+++ ++ D+G + +L L+ I + L T L
Sbjct: 232 AGVRALAANTTITTLDISDNEIGDEGARALASNAALTRLDASDCGIGPDGTQALATSTTL 291
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
SL+L I EG+ L L+ L ++G L+ T L +NLS I +
Sbjct: 292 TSLDLSYNEIEAEGVEALGRNTTLRTLHACGNELGHREAELLAASTTLTVLNLSSNAIGN 351
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
R ++L LNL I + A LT LDL RI D+ A L + L
Sbjct: 352 AGARAFGANTTLAELNLSNNGIER--VPAWADTGKLTTLDLSNNRIGDAAAQVLAASRTL 409
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+L + + DAG + ++L L++S N
Sbjct: 410 TTLNVGSNRIGDAGACALAGNTTLATLDVSLN 441
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN------------ 116
+T G+ HL L LD + C +D L G + LT+L+ RRN
Sbjct: 158 ITAVGIAHLLALP-LDRLDVSGCGLNADSA-RLLAGHATLTALNLRRNAIGDAGVAAFAR 215
Query: 117 -----------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
N I G++A A + LD+ G L L L+ C
Sbjct: 216 NKKLTTLNVSGNGIGPAGVRALAANTTITTLDISDNEIGDEGARALASNAALTRLDASDC 275
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
D + L+ T L SL +S +++ G+ L G + + C + +
Sbjct: 276 GIGPDG-TQALATSTTLTSLDLSYNEIEAEGVEAL-GRNTTLRTLHACGNELGHREAELL 333
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK---FSKIGSLKV 282
S LT+LNL + A + A +L LNL S++G E+ ++ G L
Sbjct: 334 AAS-TTLTVLNLSSNAIGNAGARAFGANTTLAELNL-----SNNGIERVPAWADTGKLTT 387
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L+L N I D L L +LN+ S IGD G L G L L++S ++G +G
Sbjct: 388 LDLSNNRIGDAAAQVLAASRTLTTLNVGSNRIGDAGACALAGNTTLATLDVSLNRIGKAG 447
Query: 343 LRHLSGLTNLESI 355
+ L+ T L+ +
Sbjct: 448 MLALAANTTLKKL 460
>gi|71657215|ref|XP_817126.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882298|gb|EAN95275.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 835
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 186/427 (43%), Gaps = 58/427 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++ L + +++ +++L +C +L+ + N C + LE L L LT LS N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G+ AF + RC + + L MKL+ +N L
Sbjct: 250 MGITEEGL-AF----------ISRCNSLRH--IQLDNCMKLQGINC-------------L 283
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGL----SISSVIFILCSMIIRLFCLHVFLTSLQKL 232
L L++L +S ++V+D GI L L + V F S + + CL L
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSSVEPVLCLDKLLELDLTE 343
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+ EGC A C G + L L C+ D + SL+ L+L +
Sbjct: 344 NWVTDEGCAALANC-------GQIQKLKLASCRCVSD-VRWICALTSLRFLDLSKTHVRS 395
Query: 293 ECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
L L LE L++ SC G+ D V GL +L L+L+DT + +G R L T
Sbjct: 396 ADLQLLTMCQRLEELHVASCSGVKDASFVE--GLLSLGHLDLTDTSIKDAGTRSLRKCT- 452
Query: 352 LESINLSFTGISD----GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
L+F + D ++ + L +L +LNL+ ++ D + L T L L L
Sbjct: 453 ----ALTFLSLQDCRFLTDIQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRH 508
Query: 408 A-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
+TD LR K L+SL++ G +TD GV + SL ++LS+ C +T E
Sbjct: 509 CLFLTD--VRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEF 564
Query: 467 ISGLTGL 473
+ LT L
Sbjct: 565 LRPLTAL 571
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 124/480 (25%), Positives = 194/480 (40%), Gaps = 104/480 (21%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +DL+ + VTD G L +C +Q L C +SD +R + LTSL F
Sbjct: 336 LLELDLTENWVTDEGCAALANCGQIQKLKLASCRCVSD-----VRWICALTSLRF----- 385
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
LDL + L L +LE L++ C+ + D+ + G
Sbjct: 386 -----------------LDLSKTHVRSADLQLLTMCQRLEELHVASCSGVKDASF--VEG 426
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L +L L ++ + + D+G + L + + L R F+ L+ L LNLE
Sbjct: 427 LLSLGHLDLTDTSIKDAGT---RSLRKCTALTFLSLQDCRFLTDIQFVEPLRNLLNLNLE 483
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE---- 293
G V A + L L L+L C L+D C ++ +LK L+L +TDE
Sbjct: 484 GTEVVDANIIPLMHCTKLEVLSLRHCLFLTDVRC--LRELKALKSLDLSGTYVTDEGVSD 541
Query: 294 ---------------CLV-HLKGLTNLESLN---------LDSCGIGDEGLVNLTGLCNL 328
CL+ H + L L +L LD G+G G V + +
Sbjct: 542 VSQCISLERIDLSECCLITHFEFLRPLTALRHVIADRMNVLDVTGLGGSGSVEGVSIADC 601
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNL-DARQI 386
K ++GS GL L +L +L + I+D + L SL+ LNL + I
Sbjct: 602 K-------RLGSMGLLEAPRLLDL---SLKKSAITDSGIHSVLLRCHSLRRLNLQNCTSI 651
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
T+ L+A+ L LT L + +IT+ A++ L L++ I D++
Sbjct: 652 TE--LSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQM-------VECVEITDVN 702
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
SL L+ LV L++S + +TS G+ L NL+ L L C+
Sbjct: 703 SLKYLH-------------------RLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGCR 743
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 38/313 (12%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ--LSDDGCEKFSKIGSLKVL 283
L++L+ LTL N P++ + LS SL + +N C+ S + ++ L +L
Sbjct: 192 LSNLRNLTLCNT---PLSEVMMLYLSECVSLERVVVNSCRGLRSLECLSSLQRLTELSLL 248
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
N+G IT+E L + +L + LD+C + +G+ L L L+ L +S +V G+
Sbjct: 249 NMG---ITEEGLAFISRCNSLRHIQLDNC-MKLQGINCLGSLIGLRTLSVSRNRVSDDGI 304
Query: 344 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
R LS L NLE + L SF +S S+ + L L L+L +TD G AAL + +
Sbjct: 305 RSLSNLRNLEQLRLVSFNRLS--SVEPVLCLDKLLELDLTENWVTDEGCAALANCGQIQK 362
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 462
L L R S ++ +LR L++ + A ++ + L L+++ + D
Sbjct: 363 LKLASCRCV-SDVRWICALTSLRFLDLSKTHVRSADLQLLTMCQRLEELHVASCSGVKDA 421
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLK-----------------------PLKNLRS 499
+ + GL L L+++++ I AG R L+ PL+NL +
Sbjct: 422 SF--VEGLLSLGHLDLTDTSIKDAGTRSLRKCTALTFLSLQDCRFLTDIQFVEPLRNLLN 479
Query: 500 LTLESCKVTANDI 512
L LE +V +I
Sbjct: 480 LNLEGTEVVDANI 492
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 127/280 (45%), Gaps = 38/280 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLSG+ VTD G+ + C +L+ +D + C I+ E LR L+ L + R N
Sbjct: 523 ALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTALRHVIADRMN 580
Query: 118 AITAQGMKAFAGLINLVKLDLERC-----------------------TRIHGGLVNLKGL 154
+ G+ + + D +R + IH L+ L
Sbjct: 581 VLDVTGLGGSGSVEGVSIADCKRLGSMGLLEAPRLLDLSLKKSAITDSGIHSVLLRCHSL 640
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILC 213
+ LN++ NC + +++ ++ L +L L + K+T+ +A++ + ++ + + C
Sbjct: 641 RR---LNLQ--NCTSITELSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQMVEC 695
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
I + L L +L L+L VT+ + L+ +L LNL+ C+ L++ C
Sbjct: 696 VEITDVNSLKY----LHRLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGCRYLTEVNCL 751
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
+ L+ L+LG ++D +V L LE+L L +C
Sbjct: 752 GELR--LLRELHLGRTTVSDSGIVGLCRCMQLETLILTNC 789
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 27/164 (16%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
SG+ +L L+NL ++ L T +S+ + L+ SL+ + +++ + + L L+SL L
Sbjct: 184 SGVTNLGVLSNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLRS-LECLSSLQRL 242
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
T L L IT+ G A++ +LR +++ NC +
Sbjct: 243 TELSLLNMGITEEGLAFISRCNSLRHIQL-------------------------DNC-MK 276
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ + + L GL +L+VS +R++ G+R L L+NL L L S
Sbjct: 277 LQGINCLGSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVS 320
>gi|290983004|ref|XP_002674219.1| predicted protein [Naegleria gruberi]
gi|284087808|gb|EFC41475.1| predicted protein [Naegleria gruberi]
Length = 293
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 3/183 (1%)
Query: 322 LTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380
+T + L L++S+ ++G + +S + L S N+S I D + + + + L SL+
Sbjct: 101 ITEMKQLTSLDISNNRIGYVTAESIISEMKQLTSFNISGNSIDDETAKSITEMKQLTSLD 160
Query: 381 LDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
+ I D T + ++ + LT ++ G I D GA + K L SL + G+ AG
Sbjct: 161 ISNNGIGDETAESIISEMKQLTSFNIGGNIIGDEGAKSISEMKQLTSLSVNNSGIGVAGA 220
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
K I ++ LTLL++ +N + + IS + L SLN+ + + G++++ +K L S
Sbjct: 221 KFISEMKQLTLLDIGENSSGVAGA-KFISEMKQLTSLNIGGNSVGVEGIKYISEMKQLTS 279
Query: 500 LTL 502
LT+
Sbjct: 280 LTI 282
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 5/177 (2%)
Query: 279 SLKVLNLGFNEITDECLV-HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 337
SL + N +T E ++ +K LT S N+ I DE ++T + L L++S+
Sbjct: 109 SLDISNNRIGYVTAESIISEMKQLT---SFNISGNSIDDETAKSITEMKQLTSLDISNNG 165
Query: 338 VGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+G + S + L S N+ I D + ++ + L SL+++ I G ++
Sbjct: 166 IGDETAESIISEMKQLTSFNIGGNIIGDEGAKSISEMKQLTSLSVNNSGIGVAGAKFISE 225
Query: 397 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453
+ LT LD+ +GA ++ K L SL I G + G+K+I ++ LT L +
Sbjct: 226 MKQLTLLDIGENSSGVAGAKFISEMKQLTSLNIGGNSVGVEGIKYISEMKQLTSLTI 282
>gi|219821357|gb|ACL37816.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESIIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L + +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESIIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|219821318|gb|ACL37790.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|219821330|gb|ACL37798.1| internalin A [Listeria monocytogenes]
gi|219821348|gb|ACL37810.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAAHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|451927274|gb|AGF85152.1| hypothetical protein glt_00343 [Moumouvirus goulette]
Length = 518
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 208/437 (47%), Gaps = 54/437 (12%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
S F F ++ ++ +++L + N+ L+ N I+ ++ + ++ +L+L++C
Sbjct: 44 SKSFAFNLKRNNIPIKNLSIIKNVRYLNLSHTN-ISDNHLELLS---DVYELNLKKCNIT 99
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204
G LK + K+ NI WC + +++M+ L N++ + +S S + D GI YL
Sbjct: 100 GSGFKYLKNIKKI---NISWCRKLINNNMQ---YLCNIQWINLSRSNINDEGIKYLILGE 153
Query: 205 ISSVIFILCSM-IIRLFCLHVFLTSLQKLT---LLNLEGCP-VTAACLDSLSALGSLFYL 259
++ + L ++ I L ++ S++ L+ + + CP V A+CL+ L+ + +L
Sbjct: 154 MNDNLIPLNNIKYINLSNTNITNNSIKILSNIPTIKINYCPHVNASCLEYLTTINNLSI- 212
Query: 260 NLNRCQLSDDG--CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317
R L D CE + ++K L L + +T + HLK L NL+ L+ + I +
Sbjct: 213 ---RTTLDRDINLCENLKYLKNIKTLKLDTSYLTSQ---HLKELKNLKILDAQNSNIEQK 266
Query: 318 GLVNLTGLCNLK-----CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 371
+ L L L C++ D+ + NL + L + I++ L+
Sbjct: 267 DIEFLDKLEYLHMRFNDCIDYFDS----------TKFNNLRVLKLPYCVAINNDCLK--- 313
Query: 372 GLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI 429
L LK +NL +ITD+GL L ++ +++ G +TD G +YL N K L +++
Sbjct: 314 NLDQLKKINLKRCLEITDSGLKYLKNVPD---INISGCLNVTDEGLSYLENVKKL-NIKH 369
Query: 430 CGGGLTDAGVKHIKDLSSLTL-LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
C G+T+ G+K++K++ + + + + LT + + + SN IT GL
Sbjct: 370 C-YGITNEGLKYLKNMKKIKIGYHNEHDIILTRYEMCTTGEIEYWNIVEKSNQNITDLGL 428
Query: 489 RHLKPLKNLRSLTLESC 505
+ L+N+ L L+ C
Sbjct: 429 SY---LQNISFLELKKC 442
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 36/277 (12%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
+ +LS + ++ YLNL+ +SD+ E S + LNL IT +LK N++
Sbjct: 58 IKNLSIIKNVRYLNLSHTNISDNHLELLSDVYE---LNLKKCNITGSGFKYLK---NIKK 111
Query: 307 LNLDSCGIGDEGLV--NLTGLCNLKCLELSDTQVGSSGLRH---------LSGLTNLESI 355
+N+ C L+ N+ LCN++ + LS + + G+++ L L N++ I
Sbjct: 112 INISWC----RKLINNNMQYLCNIQWINLSRSNINDEGIKYLILGEMNDNLIPLNNIKYI 167
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
NLS T I++ S++ L+ + ++K +N + + L LT++ L+ I +
Sbjct: 168 NLSNTNITNNSIKILSNIPTIK-INY-CPHVNASCLEYLTTINNLSIRTTLDRDI--NLC 223
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL-V 474
L+ KN+++L++ LT +H+K+L +L +L+ +QN N+ K +E + L L +
Sbjct: 224 ENLKYLKNIKTLKLDTSYLTS---QHLKELKNLKILD-AQNSNIEQKDIEFLDKLEYLHM 279
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
N S NLR L L C ND
Sbjct: 280 RFNDCIDYFDSTKFN------NLRVLKLPYCVAINND 310
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 169/395 (42%), Gaps = 72/395 (18%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LS +++T++ + K SN+ ++ N+C ++ LE+L ++NL+ + +
Sbjct: 167 INLSNTNITNNSI---KILSNIPTIKINYCPHVNASCLEYLTTINNLSIRTTLDRDINLC 223
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ +K I +KLD T H L L N
Sbjct: 224 ENLKYLKN-IKTLKLDTSYLTSQH------------------------------LKELKN 252
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC- 240
LK L S + I +L L + F C I F T L +L L C
Sbjct: 253 LKILDAQNSNIEQKDIEFLDKLEYLHMRFNDC---IDYFD----STKFNNLRVLKLPYCV 305
Query: 241 PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 299
+ CL +L L +NL RC +++D G + + + + G +TDE L +L+
Sbjct: 306 AINNDCLKNLDQLKK---INLKRCLEITDSGLKYLKNVPDINI--SGCLNVTDEGLSYLE 360
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SI 355
N++ LN+ C GI +EGL L + +K +G H LT E +
Sbjct: 361 ---NVKKLNIKHCYGITNEGLKYLKNMKKIK--------IGYHN-EHDIILTRYEMCTTG 408
Query: 356 NLSFTGISDGSLRKLA--GLSSLKSLN-LDARQITDTGLAALTSLTGLTHLDL-FGARIT 411
+ + I + S + + GLS L++++ L+ ++ + A L L +++L+L + I
Sbjct: 409 EIEYWNIVEKSNQNITDLGLSYLQNISFLELKKCNNITDAGLVRLNNVSNLELKYCENIK 468
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
S +YL+N K ++I G + + +++I ++
Sbjct: 469 GSFLSYLKNTK----IKIFGTNIKNEYLRNIPEIK 499
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 66/285 (23%)
Query: 247 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
LD + F NL R + + S I +++ LNL I+D HL+ L+++
Sbjct: 37 LDMIKNYSKSFAFNLKRNNIP---IKNLSIIKNVRYLNLSHTNISDN---HLELLSDVYE 90
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366
LNL C I G L N+K + +S + + ++ L N++ INLS + I+D
Sbjct: 91 LNLKKCNITGSGF---KYLKNIKKINISWCRKLINN--NMQYLCNIQWINLSRSNINDEG 145
Query: 367 LR---------KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
++ L L+++K +NL IT+ + L+++ + + + S Y
Sbjct: 146 IKYLILGEMNDNLIPLNNIKYINLSNTNITNNSIKILSNIPTIK--INYCPHVNASCLEY 203
Query: 418 LRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
L NL R + +C +K++K++ +L L
Sbjct: 204 LTTINNLSIRTTLDRDINLC------ENLKYLKNIKTLKL-------------------- 237
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
S +TS +HLK LKNL+ L ++ + DI+ L
Sbjct: 238 --------DTSYLTS---QHLKELKNLKILDAQNSNIEQKDIEFL 271
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 99/204 (48%), Gaps = 38/204 (18%)
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+++LS + N+ +NLS T ISD L LS + LNL IT +G L ++ +
Sbjct: 58 IKNLSIIKNVRYLNLSHTNISDNHLE---LLSDVYELNLKKCNITGSGFKYLKNIKKIN- 113
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---------IKDLSSLTLLNL 453
+ ++ ++ YL N++ + + + D G+K+ + L+++ +NL
Sbjct: 114 -ISWCRKLINNNMQYLC---NIQWINLSRSNINDEGIKYLILGEMNDNLIPLNNIKYINL 169
Query: 454 SQNCNLTDKTLELISG-------------------LTGLVSLNVSNSRITSAGL-RHLKP 493
S N N+T+ +++++S LT + +L++ + L +LK
Sbjct: 170 S-NTNITNNSIKILSNIPTIKINYCPHVNASCLEYLTTINNLSIRTTLDRDINLCENLKY 228
Query: 494 LKNLRSLTLESCKVTANDIKRLQS 517
LKN+++L L++ +T+ +K L++
Sbjct: 229 LKNIKTLKLDTSYLTSQHLKELKN 252
>gi|344270426|ref|XP_003407045.1| PREDICTED: F-box/LRR-repeat protein 13 [Loxodonta africana]
Length = 680
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 126/485 (25%), Positives = 216/485 (44%), Gaps = 105/485 (21%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
L +L++ C LQ+L + P + D+ M I+ +L ++LS + +T+ + L
Sbjct: 178 LKPKTLKSVSHCRNLQELNVSDCPTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLP 237
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GL 130
++ NLQ+L +C + +D GL++L +G LT L I+ QG + A G+
Sbjct: 238 RNFHNLQNLSLAYCRKFTDKGLQYLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGI 297
Query: 131 INL------------VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
++L VK +E+C+RI V G I+D K LS
Sbjct: 298 MHLTINDMPTLTDKCVKALVEKCSRITS--VVFIGAPH-----------ISDCAFKALST 344
Query: 179 LTNLKSLQISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
NL+ ++ +K +TDS ++ +++ + +++
Sbjct: 345 -CNLRKIRFEGNKRITDSCFKFIDK----------------------HYPNIRHIYMVDC 381
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
+G +T L SLS L L LNL C + + ++G ++ D +
Sbjct: 382 KG--LTDGSLKSLSVLKQLTVLNLANC---------------VGIGDVGLKQLLDGPVS- 423
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLSGLTNLES 354
T + LNL++C +GD +V L+ C NL L L + + + G+ H+ + +L S
Sbjct: 424 ----TKIRELNLNNCIHLGDASIVRLSERCPNLNYLNLRNCEHLTDLGIEHIVNIFSLVS 479
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT--SLTGLTHLDL-FGARI 410
++LS T IS+ L L+ LK L+L + +ITD G+ A SL L HLD+ + ++
Sbjct: 480 VDLSGTVISNEGLMTLSRHKKLKELSLSECYKITDMGIQAFCKGSLI-LEHLDVSYCPQL 538
Query: 411 TDSGAAYLRNF-KNLRSLEICG-GGLTDAGVK---------HIKDLSSLTLL------NL 453
+D L + +L SL I G +TD+ ++ HI D+S LL NL
Sbjct: 539 SDEIIKALAIYCISLTSLSIAGCPKITDSAMELLSAKCHYLHILDISGCILLTDQILENL 598
Query: 454 SQNCN 458
+ CN
Sbjct: 599 QRGCN 603
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 160/361 (44%), Gaps = 80/361 (22%)
Query: 225 FLTS-LQKLTL----LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK-I 277
++TS LQ+ L LN GC + L S+S +L LN++ C L+D+ S+
Sbjct: 156 YITSTLQRWRLNVLRLNFRGCLLKPKTLKSVSHCRNLQELNVSDCPTLTDESMRHISEGC 215
Query: 278 GSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT---GLCNLKCLE 332
+ LNL IT+ + L + NL++L+L C D+GL L G L L+
Sbjct: 216 PGVLYLNLSNTGITNRTMRLLPRNFHNLQNLSLAYCRKFTDKGLQYLNLGKGCHKLTYLD 275
Query: 333 LSD-TQVGSSGLRHL----SGLTNLESINLSFTGISDGSLRKLAGLSSLKS--LNLDARQ 385
LS TQ+ G R++ SG+ +L +IN ++D ++ L S + + + A
Sbjct: 276 LSGCTQISVQGFRNIANSCSGIMHL-TIN-DMPTLTDKCVKALVEKCSRITSVVFIGAPH 333
Query: 386 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHI 442
I+D AL++ L + G RITDS ++ +++ N+R + + GLTD +K +
Sbjct: 334 ISDCAFKALST-CNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIYMVDCKGLTDGSLKSL 392
Query: 443 KDLSSLTLLNLS------------------------------------------------ 454
L LT+LNL+
Sbjct: 393 SVLKQLTVLNLANCVGIGDVGLKQLLDGPVSTKIRELNLNNCIHLGDASIVRLSERCPNL 452
Query: 455 -----QNC-NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KV 507
+NC +LTD +E I + LVS+++S + I++ GL L K L+ L+L C K+
Sbjct: 453 NYLNLRNCEHLTDLGIEHIVNIFSLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKI 512
Query: 508 T 508
T
Sbjct: 513 T 513
>gi|342181851|emb|CCC91330.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 421
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 175/387 (45%), Gaps = 47/387 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------GGLEHLRGLSN 107
LSG+ V D L L +L+ +D C++I D G + G+
Sbjct: 43 LSGTGVIDECLCGLSLSKSLRRIDLCGCLRIKDVEPLSQIQTLEEVDVSGCFPCVCGIGA 102
Query: 108 LTSLSFRRNNAITAQGMKAFAGLIN------LVKLDLERCTRIHGGLVNLKGLMK---LE 158
L L R T G++ L+ LVKL L C R L N++ L + LE
Sbjct: 103 LGKLPHLRYLKATLTGIRDEC-LVRLSVSRCLVKLLLSNCER----LTNVQCLARITSLE 157
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMII 217
L++ C +T+ + L L +LKSL IS + +D + + K L I +I C +I
Sbjct: 158 ELDLSDCVNVTEG-IGDLGRLPSLKSLDISGTGTSDVDLCGICKSLCIEKLILKRCKLIT 216
Query: 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 277
+FCL +L L +N+ C S L L L ++ ++D+ S
Sbjct: 217 DVFCLQ----NLPTLQHVNIGECSNIIEGFGVFSVLPELRTLYVHHTAVTDNDLRAISMS 272
Query: 278 GSLKVLNLG-FNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
SL LN+ ++I D CL LK LE +N++ C ++GLV ++ L NL+ L+
Sbjct: 273 NSLVSLNIASCSQIADVSCLSDLK---TLEEININLCEGINKGLVEVSSLPNLRSLDACS 329
Query: 336 TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAA 393
T V + L ++G T LE L+ I+D + L + SL+ +NLD + T +G+
Sbjct: 330 TAVDDNCLEKIAGSTTLERGYLAGCVNITD--VTPLVAVKSLEYVNLD--ECTGISGIKE 385
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN 420
L+SL L + L G RI++ L+
Sbjct: 386 LSSLPLLRVISLRGTRISEEELKELKK 412
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 161/385 (41%), Gaps = 68/385 (17%)
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
I C C+ D++PLS + L+ + +S GI L L L
Sbjct: 65 IDLCGCLRIKDVEPLSQIQTLEEVDVSGCFPCVCGIGALGKLP-------------HLRY 111
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSL 280
L LT ++ CL LS L L L+ C+ L++ C ++I SL
Sbjct: 112 LKATLTGIRD-------------ECLVRLSVSRCLVKLLLSNCERLTNVQC--LARITSL 156
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-------- 332
+ L+L E + L L +L+SL++ G D V+L G+C C+E
Sbjct: 157 EELDLSDCVNVTEGIGDLGRLPSLKSLDISGTGTSD---VDLCGICKSLCIEKLILKRCK 213
Query: 333 -------------LSDTQVGS-----SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
L +G G S L L ++ + T ++D LR ++ +
Sbjct: 214 LITDVFCLQNLPTLQHVNIGECSNIIEGFGVFSVLPELRTLYVHHTAVTDNDLRAISMSN 273
Query: 375 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433
SL SLN+ + QI D ++ L+ L L +++ + G + + NLRSL+ C
Sbjct: 274 SLVSLNIASCSQIAD--VSCLSDLKTLEEININLCEGINKGLVEVSSLPNLRSLDACSTA 331
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHL 491
+ D ++ I ++L L+ N+TD ++ L + SL N + +G++ L
Sbjct: 332 VDDNCLEKIAGSTTLERGYLAGCVNITD-----VTPLVAVKSLEYVNLDECTGISGIKEL 386
Query: 492 KPLKNLRSLTLESCKVTANDIKRLQ 516
L LR ++L +++ ++K L+
Sbjct: 387 SSLPLLRVISLRGTRISEEELKELK 411
>gi|386042770|ref|YP_005961575.1| internalin A [Listeria monocytogenes 10403S]
gi|404409675|ref|YP_006695263.1| internalin A [Listeria monocytogenes SLCC5850]
gi|403399436|sp|G2K3G6.1|INLA_LISM4 RecName: Full=Internalin-A; Flags: Precursor
gi|150371722|dbj|BAF65676.1| internalin A [Listeria monocytogenes]
gi|150371786|dbj|BAF65682.1| internalin A [Listeria monocytogenes]
gi|150371800|dbj|BAF65689.1| internalin A [Listeria monocytogenes]
gi|150371810|dbj|BAF65694.1| internalin A [Listeria monocytogenes]
gi|150371812|dbj|BAF65695.1| internalin A [Listeria monocytogenes]
gi|150371816|dbj|BAF65697.1| internalin A [Listeria monocytogenes]
gi|150371826|dbj|BAF65702.1| internalin A [Listeria monocytogenes]
gi|150371840|dbj|BAF65709.1| internalin A [Listeria monocytogenes]
gi|150371842|dbj|BAF65710.1| internalin A [Listeria monocytogenes]
gi|150371862|dbj|BAF65720.1| internalin A [Listeria monocytogenes]
gi|150371866|dbj|BAF65722.1| internalin A [Listeria monocytogenes]
gi|167861902|gb|ACA05650.1| InlA [Listeria monocytogenes]
gi|167861984|gb|ACA05691.1| InlA [Listeria monocytogenes]
gi|167862000|gb|ACA05699.1| InlA [Listeria monocytogenes]
gi|167862006|gb|ACA05702.1| InlA [Listeria monocytogenes]
gi|194239412|emb|CAQ76846.1| internalin A [Listeria monocytogenes]
gi|223006784|gb|ACM69349.1| internalin A [Listeria monocytogenes]
gi|298359776|gb|ADI77467.1| internalin A [Listeria monocytogenes]
gi|298359804|gb|ADI77481.1| internalin A [Listeria monocytogenes]
gi|298359874|gb|ADI77516.1| internalin A [Listeria monocytogenes]
gi|298360072|gb|ADI77615.1| internalin A [Listeria monocytogenes]
gi|298360106|gb|ADI77632.1| internalin A [Listeria monocytogenes]
gi|298360118|gb|ADI77638.1| internalin A [Listeria monocytogenes]
gi|298360218|gb|ADI77688.1| internalin A [Listeria monocytogenes]
gi|298360262|gb|ADI77710.1| internalin A [Listeria monocytogenes]
gi|298360280|gb|ADI77719.1| internalin A [Listeria monocytogenes]
gi|298360386|gb|ADI77772.1| internalin A [Listeria monocytogenes]
gi|298360468|gb|ADI77813.1| internalin A [Listeria monocytogenes]
gi|298360570|gb|ADI77864.1| internalin A [Listeria monocytogenes]
gi|298360722|gb|ADI77940.1| internalin A [Listeria monocytogenes]
gi|302034307|gb|ADK92307.1| internalin A [Listeria monocytogenes]
gi|302034309|gb|ADK92308.1| internalin A [Listeria monocytogenes]
gi|302034311|gb|ADK92309.1| internalin A [Listeria monocytogenes]
gi|302034313|gb|ADK92310.1| internalin A [Listeria monocytogenes]
gi|302034319|gb|ADK92313.1| internalin A [Listeria monocytogenes]
gi|302034321|gb|ADK92314.1| internalin A [Listeria monocytogenes]
gi|302034323|gb|ADK92315.1| internalin A [Listeria monocytogenes]
gi|302034325|gb|ADK92316.1| internalin A [Listeria monocytogenes]
gi|345536004|gb|AEO05444.1| internalin A [Listeria monocytogenes 10403S]
gi|404229501|emb|CBY50905.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC5850]
gi|443428772|gb|AGC92185.1| internalin A [Listeria monocytogenes]
gi|443428780|gb|AGC92189.1| internalin A [Listeria monocytogenes]
gi|443428864|gb|AGC92231.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|441470006|emb|CCQ19761.1| Internalin-A [Listeria monocytogenes]
Length = 489
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821291|gb|ACL37772.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNKVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNKV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|313485052|gb|ADR53000.1| InlA [Listeria monocytogenes]
Length = 771
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|186681684|ref|YP_001864880.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
gi|186464136|gb|ACC79937.1| small GTP-binding protein [Nostoc punctiforme PCC 73102]
Length = 1185
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 130/462 (28%), Positives = 217/462 (46%), Gaps = 57/462 (12%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ----ISDGGLEHLRGLSNLTSLSFRRN 116
+DLSG ++T+ + + L+SL ++ + D LE + G +NL +L
Sbjct: 20 ELDLSGQELTELP-VEIGKLQQLESLILGKKVEGYERVGDHFLEKVSG-NNLKTLPLE-- 75
Query: 117 NAITAQGMKAFAGLINLVKLD-----LERCTRIHGGLVNLKGLM--KLESLNIKWCNCIT 169
GL NL KLD LE + +++L+ L+ ++E I
Sbjct: 76 ----------LLGLPNLRKLDISGNPLESIPDVVTQILHLEELILIRVE------LTEIP 119
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
D+ ++ LTNL L +S +++T A K +++ +IF ++ + + +L
Sbjct: 120 DA----IANLTNLTQLILSYNQITQIPEAIAKLSNLTVLIFSDN----KITQIPEAIANL 171
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
LT LNL +T + ++ L +L L L+ Q++ + E +++ +L +L+L N+
Sbjct: 172 TNLTRLNLSSNQITQIP-EVIAKLTNLTLLYLSGNQIT-EIPEAIAQLTNLTLLDLSDNK 229
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
IT E + TNL L+L S I E + LT NLK L LSD Q+ L+
Sbjct: 230 IT-EIPEAITQSTNLTVLDLSSNQITKIPEAIAQLT---NLKLLYLSDNQITEIP-EALA 284
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
LTNL ++LS I++ LA L++L L L QIT+ AL +L LT L L+
Sbjct: 285 NLTNLMQLHLSSNQITEIP-EALANLTNLTQLYLSGNQITEIP-EALANLPNLTRLYLYS 342
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLEL 466
+IT+ A L N NL L + + + + L++LT L+ L N + E
Sbjct: 343 NQITEIPEA-LANLTNLIQLVLFSNQIAEIP----ETLANLTNLIQLVLFSNQIAEIPET 397
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508
++ LT L L++ ++IT + + L NL L L S ++T
Sbjct: 398 LAKLTNLTRLDLRFNQITQIP-KVIANLTNLTELHLSSNQIT 438
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 132/502 (26%), Positives = 223/502 (44%), Gaps = 108/502 (21%)
Query: 20 LTEVSLEAFRDCALQDLCLGQ----YPGVNDKWMDVIASQG-----------SSLLSVDL 64
LTE+ +E + L+ L LG+ Y V D +++ ++ +L +D+
Sbjct: 28 LTELPVEIGKLQQLESLILGKKVEGYERVGDHFLEKVSGNNLKTLPLELLGLPNLRKLDI 87
Query: 65 SGSDVTD-----SGLIHLKD--------------CSNLQSL-----DFNFCIQISDGGLE 100
SG+ + + ++HL++ +NL +L +N QI +
Sbjct: 88 SGNPLESIPDVVTQILHLEELILIRVELTEIPDAIANLTNLTQLILSYNQITQIPEA--- 144
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLE 158
+ LSNLT L F +N IT Q +A A L NL +L+L + T+I + + KL
Sbjct: 145 -IAKLSNLTVLIFS-DNKIT-QIPEAIANLTNLTRLNLSSNQITQIP------EVIAKLT 195
Query: 159 SLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216
+L + + N IT+ + ++ LTNL L +S +K+T+ A + +++ V+ + + I
Sbjct: 196 NLTLLYLSGNQITEIP-EAIAQLTNLTLLDLSDNKITEIPEAITQSTNLT-VLDLSSNQI 253
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
++ LT+L+ LL L +T ++L+ L +L L+L+ Q+++ E +
Sbjct: 254 TKIPEAIAQLTNLK---LLYLSDNQITEIP-EALANLTNLMQLHLSSNQITE-IPEALAN 308
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNL-----K 329
+ +L L L N+IT E L L NL L L S I + E L NLT L L +
Sbjct: 309 LTNLTQLYLSGNQIT-EIPEALANLPNLTRLYLYSNQITEIPEALANLTNLIQLVLFSNQ 367
Query: 330 CLELSDTQVGSSGL--------------RHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
E+ +T + L L+ LTNL ++L F I+ + +A L++
Sbjct: 368 IAEIPETLANLTNLIQLVLFSNQIAEIPETLAKLTNLTRLDLRFNQITQIP-KVIANLTN 426
Query: 376 LKSLNLDARQITDTGLA----------------------ALTSLTGLTHLDLFGARITDS 413
L L+L + QIT A A+ LT LT LDL G +IT+
Sbjct: 427 LTELHLSSNQITQIPEALANLTNLTQLYFSSNQITQIPGAIAKLTNLTQLDLSGNQITEI 486
Query: 414 GAAYLRNFKNLRSLEICGGGLT 435
A + + L L++ G L
Sbjct: 487 PEA-IESLSKLEKLDLRGNPLP 507
>gi|313485056|gb|ADR53002.1| InlA [Listeria monocytogenes]
Length = 789
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|219821294|gb|ACL37774.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|313485054|gb|ADR53001.1| InlA [Listeria monocytogenes]
Length = 771
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|405757422|ref|YP_006686698.1| internalin A protein InlA, N-terminal part, partial [Listeria
monocytogenes SLCC2479]
gi|145687805|gb|ABP88875.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687811|gb|ABP88878.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687813|gb|ABP88879.1| truncated internalin A precursor [Listeria monocytogenes]
gi|167861890|gb|ACA05644.1| InlA [Listeria monocytogenes]
gi|167861942|gb|ACA05670.1| InlA [Listeria monocytogenes]
gi|167861986|gb|ACA05692.1| InlA [Listeria monocytogenes]
gi|194326143|emb|CAQ77230.1| internalin A [Listeria monocytogenes]
gi|298359794|gb|ADI77476.1| truncated internalin A [Listeria monocytogenes]
gi|298359982|gb|ADI77570.1| truncated internalin A [Listeria monocytogenes]
gi|298360074|gb|ADI77616.1| truncated internalin A [Listeria monocytogenes]
gi|298360136|gb|ADI77647.1| truncated internalin A [Listeria monocytogenes]
gi|298360184|gb|ADI77671.1| truncated internalin A [Listeria monocytogenes]
gi|298360286|gb|ADI77722.1| truncated internalin A [Listeria monocytogenes]
gi|298360300|gb|ADI77729.1| truncated internalin A [Listeria monocytogenes]
gi|298360306|gb|ADI77732.1| truncated internalin A [Listeria monocytogenes]
gi|298360344|gb|ADI77751.1| truncated internalin A [Listeria monocytogenes]
gi|298360352|gb|ADI77755.1| truncated internalin A [Listeria monocytogenes]
gi|298360358|gb|ADI77758.1| truncated internalin A [Listeria monocytogenes]
gi|298360602|gb|ADI77880.1| truncated internalin A [Listeria monocytogenes]
gi|298360636|gb|ADI77897.1| truncated internalin A [Listeria monocytogenes]
gi|371942098|gb|AEX60861.1| truncated internaline [Listeria monocytogenes]
gi|371942122|gb|AEX60873.1| truncated internaline [Listeria monocytogenes]
gi|404235304|emb|CBY56706.1| similar to internalin A protein InlA, N-terminal part [Listeria
monocytogenes SLCC2479]
Length = 576
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|313485046|gb|ADR52998.1| InlA [Listeria monocytogenes]
Length = 774
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298359932|gb|ADI77545.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|219821351|gb|ACL37812.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVKYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|167861956|gb|ACA05677.1| InlA [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 119/416 (28%), Positives = 184/416 (44%), Gaps = 80/416 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D S++ RL L + + ++
Sbjct: 204 ANLTTLERLDISSNKVSD------------------ISVLARLPTLESLIATNNQI---- 241
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
+ + L L +L L+LN QL D G + + +L L+L N+I++ L
Sbjct: 242 --------SDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LA 289
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL +
Sbjct: 290 PLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLT 345
Query: 357 LSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTS 396
L F ISD SL K LA L+++ L+ QI+D L L +
Sbjct: 346 LYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLAN 403
Query: 397 LTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 404 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L L L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLARLPTLESLIATNNQISD--ITPLGILTNLD 254
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|219821360|gb|ACL37818.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|145687803|gb|ABP88874.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687809|gb|ABP88877.1| truncated internalin A precursor [Listeria monocytogenes]
gi|194326155|emb|CAQ77236.1| internalin A [Listeria monocytogenes]
gi|294358379|gb|ADE73842.1| truncated InlA [Listeria monocytogenes]
gi|294358381|gb|ADE73843.1| truncated InlA [Listeria monocytogenes]
gi|294358383|gb|ADE73844.1| truncated InlA [Listeria monocytogenes]
gi|294358385|gb|ADE73845.1| truncated InlA [Listeria monocytogenes]
gi|298359890|gb|ADI77524.1| truncated internalin A [Listeria monocytogenes]
gi|298359938|gb|ADI77548.1| truncated internalin A [Listeria monocytogenes]
gi|298359960|gb|ADI77559.1| truncated internalin A [Listeria monocytogenes]
gi|298360012|gb|ADI77585.1| truncated internalin A [Listeria monocytogenes]
gi|371942072|gb|AEX60848.1| truncated internaline [Listeria monocytogenes]
gi|371942094|gb|AEX60859.1| truncated internaline [Listeria monocytogenes]
gi|371942120|gb|AEX60872.1| truncated internaline [Listeria monocytogenes]
gi|371942130|gb|AEX60877.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942140|gb|AEX60882.1| internaline [Listeria monocytogenes]
Length = 790
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|371942108|gb|AEX60866.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|443428800|gb|AGC92199.1| truncated internalin A [Listeria monocytogenes]
gi|443428802|gb|AGC92200.1| truncated internalin A [Listeria monocytogenes]
gi|443428806|gb|AGC92202.1| truncated internalin A [Listeria monocytogenes]
gi|443428824|gb|AGC92211.1| truncated internalin A [Listeria monocytogenes]
gi|443428830|gb|AGC92214.1| truncated internalin A [Listeria monocytogenes]
gi|443428832|gb|AGC92215.1| truncated internalin A [Listeria monocytogenes]
gi|443428834|gb|AGC92216.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|298359924|gb|ADI77541.1| internalin A [Listeria monocytogenes]
gi|298359926|gb|ADI77542.1| internalin A [Listeria monocytogenes]
gi|298360172|gb|ADI77665.1| internalin A [Listeria monocytogenes]
gi|298360388|gb|ADI77773.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|326430775|gb|EGD76345.1| variable lymphocyte receptor [Salpingoeca sp. ATCC 50818]
Length = 1124
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 115/439 (26%), Positives = 178/439 (40%), Gaps = 73/439 (16%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GLS LT+L+ R + Q + A F GL +L +LDL GL +ESLN
Sbjct: 229 GLSALTTLNLNR---VPLQTLSAQTFQGLSSLTELDLSNKKIAAIPTQAFVGLSSIESLN 285
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC 221
++ PLS ++S ++D + L L +S++ + ++ R F
Sbjct: 286 LQG---------NPLS--------KLSEGAISD--MPKLTSLDLSNLA--ITAIPARSF- 323
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+L L + L+G P+ S S++ SL L+L+RC+L+ F+ L
Sbjct: 324 -----DNLAALGNITLQGNPIAQLTNASFSSVPSLHTLDLSRCKLTSVPAAAFTAATRLS 378
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L L N IT L+GL+ L + ++ + L+ L S Q
Sbjct: 379 ALTLARNAITTIAARALRGLSKLTAFDISNNP--------------LRALPASIFQ---- 420
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
GLT+L ++NL+ T + L L +L S++ + L L
Sbjct: 421 ------GLTSLATLNLAHTNCTLLPPALLTPLHALTSISAAGTPLRAIATGTFDGLPALQ 474
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLT 460
HLDL ARIT L N L L + G L + + DLSSLT L+LS +
Sbjct: 475 HLDLSNARITALAPHSLHNLPRLHDLALGGNPLANISSHALGGDLSSLTTLDLSA-LRIA 533
Query: 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN---------- 510
+SG T L +L + ++ IT+ L L +L + S A
Sbjct: 534 AIAPHAMSGATNLTTLLLDHNAITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLS 593
Query: 511 -----DIKRLQSRDLPNLV 524
D+ RL +LP+ V
Sbjct: 594 ALATLDLSRLPVAELPSHV 612
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 119/288 (41%), Gaps = 23/288 (7%)
Query: 238 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH 297
G P++ S + L +L LNLNR L + F + SL L+L +I
Sbjct: 215 AGAPISTLSSSSFAGLSALTTLNLNRVPLQTLSAQTFQGLSSLTELDLSNKKIAAIPTQA 274
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
GL+++ESLNL + ++ + L L+LS+ + + R L L +I L
Sbjct: 275 FVGLSSIESLNLQGNPLSKLSEGAISDMPKLTSLDLSNLAITAIPARSFDNLAALGNITL 334
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
I+ + + + SL +L+L ++T AA T+ T L+ L L IT A
Sbjct: 335 QGNPIAQLTNASFSSVPSLHTLDLSRCKLTSVPAAAFTAATRLSALTLARNAITTIAARA 394
Query: 418 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-NC-----------------NL 459
LR L + +I L + L+SL LNL+ NC +
Sbjct: 395 LRGLSKLTAFDISNNPLRALPASIFQGLTSLATLNLAHTNCTLLPPALLTPLHALTSISA 454
Query: 460 TDKTLELIS-----GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L I+ GL L L++SN+RIT+ L L L L L
Sbjct: 455 AGTPLRAIATGTFDGLPALQHLDLSNARITALAPHSLHNLPRLHDLAL 502
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 140/357 (39%), Gaps = 31/357 (8%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF--LTSLQKLT 233
+SG TNL +L + + +T GLS + + I + + F L++L L
Sbjct: 540 MSGATNLTTLLLDHNAITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATLD 599
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L L + + +S+L S+ ++ L + S + ++ + + + +
Sbjct: 600 LSRLPVAELPSHVFAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMSLSSLPSH 659
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNL 352
L LT SL+LD+ + G L + + + R SG T +
Sbjct: 660 AFGALPALT---SLSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAV 716
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S+NL+ I+ + GLSS L L I + L LT LDL + +T
Sbjct: 717 RSLNLAHNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSALTG 776
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC--NLTD--------- 461
+ NL +L + L LSSL L+++ C L D
Sbjct: 777 IVSGSFSGLANLTTLTVDTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVLSPLVHV 836
Query: 462 KTLEL--------------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+TL L GL+ LV+L++SN+ +T+ G + +PL R+L L S
Sbjct: 837 RTLSLRNSSLAGAAVSTLTFDGLSQLVALDLSNNDMTAIGDKAFRPLSATRTLNLSS 893
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 116/478 (24%), Positives = 187/478 (39%), Gaps = 86/478 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQG-----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSL- 86
L DL LG P N I+S SSL ++DLS + + +NL +L
Sbjct: 497 LHDLALGGNPLAN------ISSHALGGDLSSLTTLDLSALRIAAIAPHAMSGATNLTTLL 550
Query: 87 -DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER----- 140
D N I+ + GLS L +L N A+ AF GL L LDL R
Sbjct: 551 LDHN---AITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATLDLSRLPVAE 607
Query: 141 -CTRIHGGL----------VNLKGLMKLESLNIKWCNCITDSDM-------KPLSGLTNL 182
+ + G+ V+L L N+ I+ + M L L
Sbjct: 608 LPSHVFAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMSLSSLPSHAFGALPAL 667
Query: 183 KSLQISCSKV----TDS----------------GIAYLKGLSISSVIFI----LCSMIIR 218
SL + + + TD+ GI L + S + L I
Sbjct: 668 TSLSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAVRSLNLAHNAIT 727
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
FL L T L L G P+ S + LG+L L+L+ L+ FS +
Sbjct: 728 TIAPDAFL-GLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSALTGIVSGSFSGLA 786
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNL-DSCGIG-DEGLVNLTGLCNLKCLELSDT 336
+L L + + GL++L L++ ++C +G+ L+ L +++ L L ++
Sbjct: 787 NLTTLTVDTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGV--LSPLVHVRTLSLRNS 844
Query: 337 QVGSSGLRHLS--GLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
+ + + L+ GL+ L +++LS T I D + R L S+ ++LNL + + +
Sbjct: 845 SLAGAAVSTLTFDGLSQLVALDLSNNDMTAIGDKAFRPL---SATRTLNLSSNALGNFTQ 901
Query: 392 AALTSLTGLTHLDL--FGARITDSGAAYLRNFKNLRS-------LEICG-GGLTDAGV 439
AA G+ L + + + A L + +LRS L+ CG L D+GV
Sbjct: 902 AASHVFKGMKALQVLDLSSNPFSTPPANLASLSSLRSVCMGDVPLDCCGLEDLRDSGV 959
>gi|298360700|gb|ADI77929.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|298360020|gb|ADI77589.1| truncated internalin A [Listeria monocytogenes]
gi|298360528|gb|ADI77843.1| truncated internalin A [Listeria monocytogenes]
Length = 459
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|167862012|gb|ACA05705.1| InlA [Listeria monocytogenes]
Length = 797
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|219821279|gb|ACL37764.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|298359892|gb|ADI77525.1| internalin A [Listeria monocytogenes]
gi|298360422|gb|ADI77790.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|313485058|gb|ADR53003.1| InlA [Listeria monocytogenes]
Length = 765
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|150371888|dbj|BAF65733.1| internalin A [Listeria monocytogenes]
gi|150371890|dbj|BAF65734.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|298360200|gb|ADI77679.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|130774759|gb|ABO32394.1| InlA [Listeria monocytogenes]
gi|298360132|gb|ADI77645.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|384249607|gb|EIE23088.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 484
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 21/172 (12%)
Query: 290 ITDECLVHLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLR 344
+TDE + L LTNL L+L C G D G + L+CL++S+ + + L+
Sbjct: 286 VTDELVGQLAPLTNLRELSLRGCTGLTGAPDSGFARIAAFARLECLDISNCKLLQDDALK 345
Query: 345 ---HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGL 400
L GL L ++ T ++D +L KLA L L L+L ITD G+AAL ++ GL
Sbjct: 346 VVGQLPGLRQLRAVGC--TALTDAALHKLAALQDLVQLDLGCNALITDAGIAALANMQGL 403
Query: 401 THLDLFG-ARITDSGAAYLRNFKNL------RSLEICGGGLTD--AGVKHIK 443
++L A++T++G A L NL R IC G+ + AG KH++
Sbjct: 404 EQVNLVSLAQVTNAGVAALDALPNLKRITVSRCARICESGMQEHFAG-KHLR 454
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 360 TGISDGSLRKLAGLSSLKSLNLDA----RQITDTGLAALTSLTGLTHLDLFGARI-TDSG 414
+ ++D + +LA L++L+ L+L D+G A + + L LD+ ++ D
Sbjct: 284 SNVTDELVGQLAPLTNLRELSLRGCTGLTGAPDSGFARIAAFARLECLDISNCKLLQDDA 343
Query: 415 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ LR L G LTDA + + L L L+L N +TD + ++ + GL
Sbjct: 344 LKVVGQLPGLRQLRAVGCTALTDAALHKLAALQDLVQLDLGCNALITDAGIAALANMQGL 403
Query: 474 VSLN-VSNSRITSAGLRHLKPLKNLRSLTLESC 505
+N VS +++T+AG+ L L NL+ +T+ C
Sbjct: 404 EQVNLVSLAQVTNAGVAALDALPNLKRITVSRC 436
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
DSG + + L+ LD + C + D L+ + L L L A+T + A
Sbjct: 314 APDSGFARIAAFARLECLDISNCKLLQDDALKVVGQLPGLRQLRAVGCTALTDAALHKLA 373
Query: 129 GLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L +LV+LDL C + G+ L + LE +N+ +T++ + L L NLK +
Sbjct: 374 ALQDLVQLDLG-CNALITDAGIAALANMQGLEQVNLVSLAQVTNAGVAALDALPNLKRIT 432
Query: 187 IS-CSKVTDSGI 197
+S C+++ +SG+
Sbjct: 433 VSRCARICESGM 444
>gi|322952085|gb|ADX21042.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|313485040|gb|ADR52996.1| InlA [Listeria monocytogenes]
Length = 491
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|254854324|ref|ZP_05243672.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|300766414|ref|ZP_07076370.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|404279991|ref|YP_006680889.1| internalin A [Listeria monocytogenes SLCC2755]
gi|404285805|ref|YP_006692391.1| internalin A [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405754532|ref|YP_006677996.1| internalin A [Listeria monocytogenes SLCC2540]
gi|130774761|gb|ABO32395.1| InlA [Listeria monocytogenes]
gi|130774765|gb|ABO32397.1| InlA [Listeria monocytogenes]
gi|130774775|gb|ABO32402.1| InlA [Listeria monocytogenes]
gi|150371872|dbj|BAF65725.1| internalin A [Listeria monocytogenes]
gi|150371878|dbj|BAF65728.1| internalin A [Listeria monocytogenes]
gi|150371880|dbj|BAF65729.1| internalin A [Listeria monocytogenes]
gi|150371882|dbj|BAF65730.1| internalin A [Listeria monocytogenes]
gi|150371884|dbj|BAF65731.1| internalin A [Listeria monocytogenes]
gi|150371886|dbj|BAF65732.1| internalin A [Listeria monocytogenes]
gi|167861936|gb|ACA05667.1| InlA [Listeria monocytogenes]
gi|167861950|gb|ACA05674.1| InlA [Listeria monocytogenes]
gi|167861974|gb|ACA05686.1| InlA [Listeria monocytogenes]
gi|167861990|gb|ACA05694.1| InlA [Listeria monocytogenes]
gi|194239386|emb|CAQ76833.1| internalin A [Listeria monocytogenes]
gi|194239390|emb|CAQ76835.1| internalin A [Listeria monocytogenes]
gi|194239398|emb|CAQ76839.1| internalin A [Listeria monocytogenes]
gi|194326159|emb|CAQ77238.1| internalin A [Listeria monocytogenes]
gi|223006782|gb|ACM69348.1| internalin A [Listeria monocytogenes]
gi|258607720|gb|EEW20328.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|290350822|dbj|BAI78332.1| internalin A [Listeria monocytogenes]
gi|290350824|dbj|BAI78333.1| internalin A [Listeria monocytogenes]
gi|298359734|gb|ADI77446.1| internalin A [Listeria monocytogenes]
gi|298359740|gb|ADI77449.1| internalin A [Listeria monocytogenes]
gi|298359774|gb|ADI77466.1| internalin A [Listeria monocytogenes]
gi|298359822|gb|ADI77490.1| internalin A [Listeria monocytogenes]
gi|298359826|gb|ADI77492.1| internalin A [Listeria monocytogenes]
gi|298359830|gb|ADI77494.1| internalin A [Listeria monocytogenes]
gi|298359834|gb|ADI77496.1| internalin A [Listeria monocytogenes]
gi|298359836|gb|ADI77497.1| internalin A [Listeria monocytogenes]
gi|298359846|gb|ADI77502.1| internalin A [Listeria monocytogenes]
gi|298359848|gb|ADI77503.1| internalin A [Listeria monocytogenes]
gi|298359854|gb|ADI77506.1| internalin A [Listeria monocytogenes]
gi|298359856|gb|ADI77507.1| internalin A [Listeria monocytogenes]
gi|298359868|gb|ADI77513.1| internalin A [Listeria monocytogenes]
gi|298359870|gb|ADI77514.1| internalin A [Listeria monocytogenes]
gi|298359888|gb|ADI77523.1| internalin A [Listeria monocytogenes]
gi|298359920|gb|ADI77539.1| internalin A [Listeria monocytogenes]
gi|298359954|gb|ADI77556.1| internalin A [Listeria monocytogenes]
gi|298359968|gb|ADI77563.1| internalin A [Listeria monocytogenes]
gi|298359972|gb|ADI77565.1| internalin A [Listeria monocytogenes]
gi|298359984|gb|ADI77571.1| internalin A [Listeria monocytogenes]
gi|298359998|gb|ADI77578.1| internalin A [Listeria monocytogenes]
gi|298360002|gb|ADI77580.1| internalin A [Listeria monocytogenes]
gi|298360006|gb|ADI77582.1| internalin A [Listeria monocytogenes]
gi|298360040|gb|ADI77599.1| internalin A [Listeria monocytogenes]
gi|298360042|gb|ADI77600.1| internalin A [Listeria monocytogenes]
gi|298360044|gb|ADI77601.1| internalin A [Listeria monocytogenes]
gi|298360050|gb|ADI77604.1| internalin A [Listeria monocytogenes]
gi|298360080|gb|ADI77619.1| internalin A [Listeria monocytogenes]
gi|298360090|gb|ADI77624.1| internalin A [Listeria monocytogenes]
gi|298360100|gb|ADI77629.1| internalin A [Listeria monocytogenes]
gi|298360126|gb|ADI77642.1| internalin A [Listeria monocytogenes]
gi|298360150|gb|ADI77654.1| internalin A [Listeria monocytogenes]
gi|298360156|gb|ADI77657.1| internalin A [Listeria monocytogenes]
gi|298360166|gb|ADI77662.1| internalin A [Listeria monocytogenes]
gi|298360188|gb|ADI77673.1| internalin A [Listeria monocytogenes]
gi|298360190|gb|ADI77674.1| internalin A [Listeria monocytogenes]
gi|298360194|gb|ADI77676.1| internalin A [Listeria monocytogenes]
gi|298360220|gb|ADI77689.1| internalin A [Listeria monocytogenes]
gi|298360222|gb|ADI77690.1| internalin A [Listeria monocytogenes]
gi|298360238|gb|ADI77698.1| internalin A [Listeria monocytogenes]
gi|298360246|gb|ADI77702.1| internalin A [Listeria monocytogenes]
gi|298360260|gb|ADI77709.1| internalin A [Listeria monocytogenes]
gi|298360264|gb|ADI77711.1| internalin A [Listeria monocytogenes]
gi|298360266|gb|ADI77712.1| internalin A [Listeria monocytogenes]
gi|298360294|gb|ADI77726.1| internalin A [Listeria monocytogenes]
gi|298360298|gb|ADI77728.1| internalin A [Listeria monocytogenes]
gi|298360312|gb|ADI77735.1| internalin A [Listeria monocytogenes]
gi|298360318|gb|ADI77738.1| internalin A [Listeria monocytogenes]
gi|298360356|gb|ADI77757.1| internalin A [Listeria monocytogenes]
gi|298360368|gb|ADI77763.1| internalin A [Listeria monocytogenes]
gi|298360396|gb|ADI77777.1| internalin A [Listeria monocytogenes]
gi|298360398|gb|ADI77778.1| internalin A [Listeria monocytogenes]
gi|298360400|gb|ADI77779.1| internalin A [Listeria monocytogenes]
gi|298360428|gb|ADI77793.1| internalin A [Listeria monocytogenes]
gi|298360434|gb|ADI77796.1| internalin A [Listeria monocytogenes]
gi|298360448|gb|ADI77803.1| internalin A [Listeria monocytogenes]
gi|298360462|gb|ADI77810.1| internalin A [Listeria monocytogenes]
gi|298360498|gb|ADI77828.1| internalin A [Listeria monocytogenes]
gi|298360502|gb|ADI77830.1| internalin A [Listeria monocytogenes]
gi|298360510|gb|ADI77834.1| internalin A [Listeria monocytogenes]
gi|298360514|gb|ADI77836.1| internalin A [Listeria monocytogenes]
gi|298360558|gb|ADI77858.1| internalin A [Listeria monocytogenes]
gi|298360560|gb|ADI77859.1| internalin A [Listeria monocytogenes]
gi|298360566|gb|ADI77862.1| internalin A [Listeria monocytogenes]
gi|298360586|gb|ADI77872.1| internalin A [Listeria monocytogenes]
gi|298360614|gb|ADI77886.1| internalin A [Listeria monocytogenes]
gi|298360630|gb|ADI77894.1| internalin A [Listeria monocytogenes]
gi|298360638|gb|ADI77898.1| internalin A [Listeria monocytogenes]
gi|298360652|gb|ADI77905.1| internalin A [Listeria monocytogenes]
gi|298360680|gb|ADI77919.1| internalin A [Listeria monocytogenes]
gi|298360682|gb|ADI77920.1| internalin A [Listeria monocytogenes]
gi|298360694|gb|ADI77926.1| internalin A [Listeria monocytogenes]
gi|298360704|gb|ADI77931.1| internalin A [Listeria monocytogenes]
gi|298360706|gb|ADI77932.1| internalin A [Listeria monocytogenes]
gi|300512880|gb|EFK39971.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|302034315|gb|ADK92311.1| internalin A [Listeria monocytogenes]
gi|302034317|gb|ADK92312.1| internalin A [Listeria monocytogenes]
gi|404223732|emb|CBY75094.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2540]
gi|404226626|emb|CBY48031.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244734|emb|CBY02959.1| internalin A (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|371942144|gb|AEX60884.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|313485077|gb|ADR53009.1| InlA [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|130774815|gb|ABO32420.1| InlA [Listeria monocytogenes]
gi|194239404|emb|CAQ76842.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|313485079|gb|ADR53010.1| InlA [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|126143308|gb|ABN80096.1| InlA [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITPLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|47092503|ref|ZP_00230292.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|417314487|ref|ZP_12101186.1| internalin A [Listeria monocytogenes J1816]
gi|47019095|gb|EAL09839.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|130774783|gb|ABO32406.1| InlA [Listeria monocytogenes]
gi|130774787|gb|ABO32408.1| InlA [Listeria monocytogenes]
gi|167861878|gb|ACA05638.1| InlA [Listeria monocytogenes]
gi|167861926|gb|ACA05662.1| InlA [Listeria monocytogenes]
gi|194239406|emb|CAQ76843.1| internalin A [Listeria monocytogenes]
gi|223006800|gb|ACM69357.1| internalin A [Listeria monocytogenes]
gi|223006808|gb|ACM69361.1| internalin A [Listeria monocytogenes]
gi|294358399|gb|ADE73852.1| InlA [Listeria monocytogenes]
gi|298359958|gb|ADI77558.1| internalin A [Listeria monocytogenes]
gi|298359988|gb|ADI77573.1| internalin A [Listeria monocytogenes]
gi|298360010|gb|ADI77584.1| internalin A [Listeria monocytogenes]
gi|298360208|gb|ADI77683.1| internalin A [Listeria monocytogenes]
gi|298360370|gb|ADI77764.1| internalin A [Listeria monocytogenes]
gi|298360402|gb|ADI77780.1| internalin A [Listeria monocytogenes]
gi|298360472|gb|ADI77815.1| internalin A [Listeria monocytogenes]
gi|298360544|gb|ADI77851.1| internalin A [Listeria monocytogenes]
gi|298360592|gb|ADI77875.1| internalin A [Listeria monocytogenes]
gi|328467733|gb|EGF38785.1| internalin A [Listeria monocytogenes J1816]
gi|443428820|gb|AGC92209.1| truncated internalin A [Listeria monocytogenes]
gi|443428844|gb|AGC92221.1| truncated internalin A [Listeria monocytogenes]
gi|443428846|gb|AGC92222.1| truncated internalin A [Listeria monocytogenes]
gi|443428850|gb|AGC92224.1| truncated internalin A [Listeria monocytogenes]
gi|443428854|gb|AGC92226.1| truncated internalin A [Listeria monocytogenes]
gi|443428856|gb|AGC92227.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821375|gb|ACL37828.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|284800720|ref|YP_003412585.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284993906|ref|YP_003415674.1| Internalin A [Listeria monocytogenes 08-5923]
gi|130774827|gb|ABO32426.1| InlA [Listeria monocytogenes]
gi|167862038|gb|ACA05718.1| InlA [Listeria monocytogenes]
gi|194326145|emb|CAQ77231.1| internalin A [Listeria monocytogenes]
gi|194326165|emb|CAQ77241.1| internalin A [Listeria monocytogenes]
gi|284056282|gb|ADB67223.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284059373|gb|ADB70312.1| Internalin A [Listeria monocytogenes 08-5923]
gi|298359730|gb|ADI77444.1| internalin A [Listeria monocytogenes]
gi|298359786|gb|ADI77472.1| internalin A [Listeria monocytogenes]
gi|298359904|gb|ADI77531.1| internalin A [Listeria monocytogenes]
gi|298359978|gb|ADI77568.1| internalin A [Listeria monocytogenes]
gi|298360068|gb|ADI77613.1| internalin A [Listeria monocytogenes]
gi|298360228|gb|ADI77693.1| internalin A [Listeria monocytogenes]
gi|298360452|gb|ADI77805.1| internalin A [Listeria monocytogenes]
gi|298360556|gb|ADI77857.1| internalin A [Listeria monocytogenes]
gi|298360576|gb|ADI77867.1| internalin A [Listeria monocytogenes]
gi|298360600|gb|ADI77879.1| internalin A [Listeria monocytogenes]
gi|298360678|gb|ADI77918.1| internalin A [Listeria monocytogenes]
gi|443428872|gb|AGC92235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942068|gb|AEX60846.1| internaline [Listeria monocytogenes]
gi|371942088|gb|AEX60856.1| internaline [Listeria monocytogenes]
gi|371942106|gb|AEX60865.1| internaline [Listeria monocytogenes]
gi|371942134|gb|AEX60879.1| internaline [Listeria monocytogenes]
Length = 790
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|298360648|gb|ADI77903.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|223698697|gb|ACN19038.1| truncated internalin A [Listeria monocytogenes]
gi|223698841|gb|ACN19134.1| truncated internalin A [Listeria monocytogenes]
gi|223698877|gb|ACN19158.1| truncated internalin A [Listeria monocytogenes]
gi|223698922|gb|ACN19188.1| truncated internalin A [Listeria monocytogenes]
Length = 406
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|371942070|gb|AEX60847.1| internaline [Listeria monocytogenes]
Length = 789
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|223698871|gb|ACN19154.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|219821372|gb|ACL37826.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|371942090|gb|AEX60857.1| internaline [Listeria monocytogenes]
Length = 790
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|294358389|gb|ADE73847.1| InlA [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|226223065|ref|YP_002757172.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731210|ref|YP_006204706.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406703224|ref|YP_006753578.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
gi|167861892|gb|ACA05645.1| InlA [Listeria monocytogenes]
gi|167861914|gb|ACA05656.1| InlA [Listeria monocytogenes]
gi|167861978|gb|ACA05688.1| InlA [Listeria monocytogenes]
gi|194239396|emb|CAQ76838.1| internalin A [Listeria monocytogenes]
gi|225875527|emb|CAS04230.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|298359780|gb|ADI77469.1| internalin A [Listeria monocytogenes]
gi|384389968|gb|AFH79038.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406360254|emb|CBY66527.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|112961772|gb|ABI28534.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 43 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 95
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 96 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 150
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 151 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 208
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 209 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 259
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -NISPLAGLTALT 271
>gi|254825753|ref|ZP_05230754.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|255521302|ref|ZP_05388539.1| internalin A [Listeria monocytogenes FSL J1-175]
gi|130774771|gb|ABO32400.1| InlA [Listeria monocytogenes]
gi|130774777|gb|ABO32403.1| InlA [Listeria monocytogenes]
gi|130774779|gb|ABO32404.1| InlA [Listeria monocytogenes]
gi|150371874|dbj|BAF65726.1| internalin A [Listeria monocytogenes]
gi|150371876|dbj|BAF65727.1| internalin A [Listeria monocytogenes]
gi|223006790|gb|ACM69352.1| internalin A [Listeria monocytogenes]
gi|290350838|dbj|BAI78340.1| internalin A [Listeria monocytogenes]
gi|293594997|gb|EFG02758.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|298359742|gb|ADI77450.1| internalin A [Listeria monocytogenes]
gi|298359744|gb|ADI77451.1| internalin A [Listeria monocytogenes]
gi|298359756|gb|ADI77457.1| internalin A [Listeria monocytogenes]
gi|298359790|gb|ADI77474.1| internalin A [Listeria monocytogenes]
gi|298359872|gb|ADI77515.1| internalin A [Listeria monocytogenes]
gi|298359880|gb|ADI77519.1| internalin A [Listeria monocytogenes]
gi|298359942|gb|ADI77550.1| internalin A [Listeria monocytogenes]
gi|298359946|gb|ADI77552.1| internalin A [Listeria monocytogenes]
gi|298360032|gb|ADI77595.1| internalin A [Listeria monocytogenes]
gi|298360064|gb|ADI77611.1| internalin A [Listeria monocytogenes]
gi|298360114|gb|ADI77636.1| internalin A [Listeria monocytogenes]
gi|298360202|gb|ADI77680.1| internalin A [Listeria monocytogenes]
gi|298360282|gb|ADI77720.1| internalin A [Listeria monocytogenes]
gi|298360284|gb|ADI77721.1| internalin A [Listeria monocytogenes]
gi|298360314|gb|ADI77736.1| internalin A [Listeria monocytogenes]
gi|298360330|gb|ADI77744.1| internalin A [Listeria monocytogenes]
gi|298360346|gb|ADI77752.1| internalin A [Listeria monocytogenes]
gi|298360410|gb|ADI77784.1| internalin A [Listeria monocytogenes]
gi|298360420|gb|ADI77789.1| internalin A [Listeria monocytogenes]
gi|298360440|gb|ADI77799.1| internalin A [Listeria monocytogenes]
gi|298360454|gb|ADI77806.1| internalin A [Listeria monocytogenes]
gi|298360470|gb|ADI77814.1| internalin A [Listeria monocytogenes]
gi|298360494|gb|ADI77826.1| internalin A [Listeria monocytogenes]
gi|298360506|gb|ADI77832.1| internalin A [Listeria monocytogenes]
gi|298360604|gb|ADI77881.1| internalin A [Listeria monocytogenes]
gi|298360610|gb|ADI77884.1| internalin A [Listeria monocytogenes]
gi|298360612|gb|ADI77885.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|85679238|gb|ABC72035.1| InlA [Listeria monocytogenes]
Length = 791
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 175/402 (43%), Gaps = 84/402 (20%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + A L NL
Sbjct: 112 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNL 165
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 166 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 219
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
D ++ L KLT NLE T + ++ L
Sbjct: 220 D-------------------------------ISVLAKLT--NLESLIATNNQISDITPL 246
Query: 254 G---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
G +L L+LN QL D G + + +L L+L N+I++ L L GLT L L L
Sbjct: 247 GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 302
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GS 366
+ I + + L GL L LEL++ Q+ + +S L NL + L F ISD S
Sbjct: 303 ANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSS 358
Query: 367 LRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L K LA L+++ L+ QI+D L L +LT +T L L
Sbjct: 359 LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEW 416
Query: 411 TDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
T+ Y N KN+ I ++D G D++
Sbjct: 417 TNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 324
DG E + +L +N GFN++TD + LK LT L + +++ I D L NLTG
Sbjct: 91 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 145
Query: 325 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L NL LELS + S + LSGLTNL+ LSF G L+
Sbjct: 146 LTLFNNQITDIDALKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 200
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
LA L++L+ L++ + +++D ++ L LT L L +I+D L NL L
Sbjct: 201 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 256
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 -NISPLAGLTALT 319
>gi|313485048|gb|ADR52999.1| InlA [Listeria monocytogenes]
gi|313485083|gb|ADR53012.1| InlA [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|290971847|ref|XP_002668685.1| predicted protein [Naegleria gruberi]
gi|284082182|gb|EFC35941.1| predicted protein [Naegleria gruberi]
Length = 307
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 87/174 (50%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G + S++ L L + N + E ++ L L +L++ IGDEG +++ L L
Sbjct: 121 EGAKHISQLKQLTFLGVSGNFVGVEGAKYISQLKQLTNLDICFNNIGDEGAKHISELKQL 180
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
K L++ + +G G +++S L +L +++S+ + ++ ++ + L LN+ I D
Sbjct: 181 KNLKIGNNYIGVEGAKYISQLKHLTKLSISYNNVRVEGVKYISEMKQLTDLNIGENVIGD 240
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
G + L LT L + G I+++GA Y+ K L L I + G ++I
Sbjct: 241 EGAKHIKKLNQLTRLSISGVEISEAGAKYICEMKQLTQLNIKNNNIGKIGKEYI 294
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%)
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
FN+I E H+ L L L + +G EG ++ L L L++ +G G +H+
Sbjct: 115 FNDIGVEGAKHISQLKQLTFLGVSGNFVGVEGAKYISQLKQLTNLDICFNNIGDEGAKHI 174
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
S L L+++ + I + ++ L L L++ + G+ ++ + LT L++
Sbjct: 175 SELKQLKNLKIGNNYIGVEGAKYISQLKHLTKLSISYNNVRVEGVKYISEMKQLTDLNIG 234
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
I D GA +++ L L I G +++AG K+I ++ LT LN+ N
Sbjct: 235 ENVIGDEGAKHIKKLNQLTRLSISGVEISEAGAKYICEMKQLTQLNIKNN 284
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
F I + ++ L L L + + G ++ L LT+LD+ I D GA ++
Sbjct: 115 FNDIGVEGAKHISQLKQLTFLGVSGNFVGVEGAKYISQLKQLTNLDICFNNIGDEGAKHI 174
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
K L++L+I + G K+I L LT L++S N N+ + ++ IS + L LN+
Sbjct: 175 SELKQLKNLKIGNNYIGVEGAKYISQLKHLTKLSISYN-NVRVEGVKYISEMKQLTDLNI 233
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ I G +H+K L L L++ +++ K +
Sbjct: 234 GENVIGDEGAKHIKKLNQLTRLSISGVEISEAGAKYI 270
>gi|167861934|gb|ACA05666.1| InlA [Listeria monocytogenes]
gi|194326141|emb|CAQ77229.1| internalin A [Listeria monocytogenes]
Length = 538
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|322952090|gb|ADX21044.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|130774791|gb|ABO32410.1| InlA [Listeria monocytogenes]
gi|298360240|gb|ADI77699.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|17546075|ref|NP_519477.1| GALA protein 4 [Ralstonia solanacearum GMI1000]
gi|17428371|emb|CAD15058.1| type III effector protein gala6 [Ralstonia solanacearum GMI1000]
Length = 620
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 180/434 (41%), Gaps = 34/434 (7%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+GS ++ GL HL L+SL+ N I+I G L +L SLS I +
Sbjct: 174 TGSAISAEGLAHLASMP-LKSLNLN-GIEIGVEGARTLAASKSLVSLSLI-GCGIGDRAA 230
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+A ++ LDL RI G L G L SLN+ N I + + L+ L
Sbjct: 231 QALVASRSIQCLDLS-VNRIGRDGAQALAG-APLVSLNLH-NNEIGNEGARVLATSRTLT 287
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
SL +S + V ++G G ++ + + MI L + LT L+L +
Sbjct: 288 SLDVSNNGVGNAGAEAFAGNTVLKQLSLAGGMISGDGA--QALADNKSLTDLDLSNNRLG 345
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD----------- 292
A +L+ S L L ++ DG E ++ L+ LNL +N I
Sbjct: 346 DAGAQALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSYNPIGFWGVNALGRAKL 405
Query: 293 ------ECLVHLKGL------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
C + G T+L SL L S IGD+G L L L LS + +
Sbjct: 406 RKLDLCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGNNIHA 465
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G + L+ +L +++LS GI D LA L SLNL QI TG L L
Sbjct: 466 VGAQALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQLAKSATL 525
Query: 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460
LDL RI GA L L +L + + +AG + + + SLT L+ +N
Sbjct: 526 AELDLSENRIGPEGAEALARSTVLTTLNVSYNAIGEAGARALAESVSLTSLDARRNGIGE 585
Query: 461 D--KTLELISGLTG 472
D K LE + +TG
Sbjct: 586 DGAKVLEANTRITG 599
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 158/383 (41%), Gaps = 27/383 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+ L G + D L ++Q LD + +I G + L G + L SL+ NN
Sbjct: 214 SLVSLSLIGCGIGDRAAQALVASRSIQCLDLSVN-RIGRDGAQALAG-APLVSLNLH-NN 270
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G + A L LD+ + G G L+ L++ I+ + L+
Sbjct: 271 EIGNEGARVLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLA-GGMISGDGAQALA 329
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII-----RLFCLHVFLTSLQ-- 230
+L L +S +++ D+G L S S V L I +V L SL
Sbjct: 330 DNKSLTDLDLSNNRLGDAGAQALAD-SESFVSLKLGGNEIGADGAEALARNVVLQSLNLS 388
Query: 231 ---------------KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
KL L+L C + + +L+ SL L L ++ DDG +
Sbjct: 389 YNPIGFWGVNALGRAKLRKLDLCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALA 448
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
K +L +LNL N I L +L +L+L GIGD+G L L L LS
Sbjct: 449 KNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSR 508
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
Q+GS+G + L+ L ++LS I LA + L +LN+ I + G AL
Sbjct: 509 NQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNVSYNAIGEAGARALA 568
Query: 396 SLTGLTHLDLFGARITDSGAAYL 418
LT LD I + GA L
Sbjct: 569 ESVSLTSLDARRNGIGEDGAKVL 591
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 134/345 (38%), Gaps = 80/345 (23%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL +DLS + + D+G L D + SL GG N
Sbjct: 333 SLTDLDLSNNRLGDAGAQALADSESFVSLKL--------GG------------------N 366
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPL 176
I A G +A A + L L+L G VN G KL L++ C C DSD L
Sbjct: 367 EIGADGAEALARNVVLQSLNLSYNPIGFWG-VNALGRAKLRKLDL--CACAIDSDGASAL 423
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ T+L SL + +++ D G L S LTLLN
Sbjct: 424 ARNTSLASLYLGSNRIGDDGARALAKNST--------------------------LTLLN 457
Query: 237 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296
L G + A +L++ SL L+L+R + DDG + C
Sbjct: 458 LSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAALA------------------C-- 497
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
H + L SLNL IG G L L L+LS+ ++G G L+ T L ++N
Sbjct: 498 HPR----LTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLN 553
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
+S+ I + R LA SL SL+ I + G L + T +T
Sbjct: 554 VSYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVLEANTRIT 598
>gi|223698625|gb|ACN18990.1| internalin A [Listeria monocytogenes]
gi|223698736|gb|ACN19064.1| internalin A [Listeria monocytogenes]
gi|223698739|gb|ACN19066.1| internalin A [Listeria monocytogenes]
gi|223698847|gb|ACN19138.1| internalin A [Listeria monocytogenes]
gi|223698904|gb|ACN19176.1| internalin A [Listeria monocytogenes]
gi|223698955|gb|ACN19210.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|149674|gb|AAA25289.1| internalin [Listeria monocytogenes]
gi|22347564|gb|AAM95927.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|422808574|ref|ZP_16856985.1| Internalin A [Listeria monocytogenes FSL J1-208]
gi|378752188|gb|EHY62773.1| Internalin A [Listeria monocytogenes FSL J1-208]
Length = 802
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|112959536|gb|ABI27295.1| internalin A [Listeria monocytogenes]
gi|112959546|gb|ABI27300.1| internalin A [Listeria monocytogenes]
Length = 734
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 29 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 81
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 82 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 136
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 137 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 194
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 195 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 245
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -NISPLAGLTALT 257
>gi|223698610|gb|ACN18980.1| internalin A [Listeria monocytogenes]
gi|223698616|gb|ACN18984.1| internalin A [Listeria monocytogenes]
gi|223698631|gb|ACN18994.1| internalin A [Listeria monocytogenes]
gi|223698637|gb|ACN18998.1| internalin A [Listeria monocytogenes]
gi|223698640|gb|ACN19000.1| internalin A [Listeria monocytogenes]
gi|223698649|gb|ACN19006.1| internalin A [Listeria monocytogenes]
gi|223698652|gb|ACN19008.1| internalin A [Listeria monocytogenes]
gi|223698661|gb|ACN19014.1| internalin A [Listeria monocytogenes]
gi|223698667|gb|ACN19018.1| internalin A [Listeria monocytogenes]
gi|223698676|gb|ACN19024.1| internalin A [Listeria monocytogenes]
gi|223698679|gb|ACN19026.1| internalin A [Listeria monocytogenes]
gi|223698685|gb|ACN19030.1| internalin A [Listeria monocytogenes]
gi|223698688|gb|ACN19032.1| internalin A [Listeria monocytogenes]
gi|223698709|gb|ACN19046.1| internalin A [Listeria monocytogenes]
gi|223698721|gb|ACN19054.1| internalin A [Listeria monocytogenes]
gi|223698724|gb|ACN19056.1| internalin A [Listeria monocytogenes]
gi|223698727|gb|ACN19058.1| internalin A [Listeria monocytogenes]
gi|223698730|gb|ACN19060.1| internalin A [Listeria monocytogenes]
gi|223698733|gb|ACN19062.1| internalin A [Listeria monocytogenes]
gi|223698742|gb|ACN19068.1| internalin A [Listeria monocytogenes]
gi|223698763|gb|ACN19082.1| internalin A [Listeria monocytogenes]
gi|223698790|gb|ACN19100.1| internalin A [Listeria monocytogenes]
gi|223698808|gb|ACN19112.1| internalin A [Listeria monocytogenes]
gi|223698811|gb|ACN19114.1| internalin A [Listeria monocytogenes]
gi|223698823|gb|ACN19122.1| internalin A [Listeria monocytogenes]
gi|223698853|gb|ACN19142.1| internalin A [Listeria monocytogenes]
gi|223698874|gb|ACN19156.1| internalin A [Listeria monocytogenes]
gi|223698889|gb|ACN19166.1| internalin A [Listeria monocytogenes]
gi|223698949|gb|ACN19206.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|149052066|gb|EDM03883.1| insulin-like growth factor binding protein, acid labile subunit,
isoform CRA_a [Rattus norvegicus]
Length = 603
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 184/475 (38%), Gaps = 49/475 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAIT-AQGMKAFAGLINLV 134
NL SLDF + + L L GL NL L RN A G+ + +
Sbjct: 95 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYHLHLERNRLRNLAVGLFTHTPSLASL 151
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 152 SLSSNLLGRLEEGL--FQGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLTY 208
Query: 195 SGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQKL 232
A GL S+ + +F+ + +L+ +T+ ++ L
Sbjct: 209 LQPALFCGLGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPRAFLGMKAL 268
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 269 RWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQ 328
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+GL LE L L+ I + + +GL N+ + LS + S R GL L
Sbjct: 329 LGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKL 388
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S++L + + L AGLS L+ L L I+ +L L+ L LDL R+T
Sbjct: 389 HSLHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTH 448
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+ +L L + LT + + L L++S N +L L S L
Sbjct: 449 LPRQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHN-HLETLAEGLFSSLGR 507
Query: 473 LVSLNVSNSRITS----AGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L L++ N+ + + GL L PLK LR L++ V ++
Sbjct: 508 LRYLSLRNNSLQTFSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562
>gi|194239378|emb|CAQ76829.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNKISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|112959468|gb|ABI27261.1| internalin A [Listeria monocytogenes]
Length = 730
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 28 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 81
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 82 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 133
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 134 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 160
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 161 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 217
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 218 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 272
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 273 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 330
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 331 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 389
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 20 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 75
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 76 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 127
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 128 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 183
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 184 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 238
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 239 -----NISPLAGLTALT 250
>gi|22347548|gb|AAM95919.1| internalin A precursor [Listeria monocytogenes]
gi|22347558|gb|AAM95924.1| internalin A precursor [Listeria monocytogenes]
gi|22347560|gb|AAM95925.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 141
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 142 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 197
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 198 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 252
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -----NISPLAGLTALT 264
>gi|150371828|dbj|BAF65703.1| internalin A [Listeria monocytogenes]
Length = 526
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|322952088|gb|ADX21043.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|223698613|gb|ACN18982.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 186/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T + L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQVGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 342 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 397
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 2 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 59
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 60 TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 93
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDIKRL 515
IS L+GL+SL + S G + LKPL NL TLE +++N + +
Sbjct: 94 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKVSDI 137
>gi|219821276|gb|ACL37762.1| internalin A [Listeria monocytogenes]
gi|219821336|gb|ACL37802.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|112961700|gb|ABI28486.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 43 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 95
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 96 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 150
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 151 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 208
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 209 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 259
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -NISPLAGLTALT 271
>gi|328698260|ref|XP_001948969.2| PREDICTED: leucine-rich repeats and immunoglobulin-like domains
protein 1-like [Acyrthosiphon pisum]
Length = 537
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 146/328 (44%), Gaps = 11/328 (3%)
Query: 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
L++S +K+ D L L+ + IL IIR F +L KL LL L+ +
Sbjct: 72 LELSFNKIRDIEPKSLTHLTELETL-ILSHNIIREMKNGAF-ANLSKLRLLYLDANEIEN 129
Query: 245 ---ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
++L+ L L YLN N+ D F + LK L+L N+I D L L
Sbjct: 130 IENGVFNNLTTLEKL-YLNYNKIHKLDSDI--FIGLTKLKTLDLSNNKIRDIEPKSLTHL 186
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T LE L L + I D + T L L+ L L ++ + + LT+LE++ L+F
Sbjct: 187 TELEILILSNNKISDVKIGVFTNLSKLRLLYLDLNEIENIETGVFNNLTSLENLYLNFNN 246
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
I GL+ L +L L +I D L++LT L L L +I+D N
Sbjct: 247 IHKLDSEMFIGLTKLNTLYLSYNKIRDIVPKLLSNLTELKVLSLSNNKISDVKIGAFTNL 306
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-CNLTDKTLELISGLTGLVSLNVSN 480
NLR+L + + + +L+SL L L N + D E+ GLT L L++ N
Sbjct: 307 SNLRTLSLNENKIENLETGVFNNLTSLENLYLDYNRIHYLDS--EMFKGLTKLNELHLHN 364
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVT 508
+ I + L +L +LTL + +T
Sbjct: 365 NMIRNIPRGIFDSLTSLGNLTLRNVPLT 392
>gi|301621895|ref|XP_002940278.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Xenopus (Silurana) tropicalis]
Length = 601
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 125/487 (25%), Positives = 195/487 (40%), Gaps = 49/487 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P W+D G++L +V L HL D NLQS Q++ +
Sbjct: 67 PAARSLWLD-----GNNLTTVQAGAF----RNLSHL-DFLNLQS------SQVASLEQQA 110
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLES 159
L GL L L RN I + F NLV L L T+I GL GL L
Sbjct: 111 LHGLKALAHLHLERN-MIKSLAPSTFTHTQNLVSLTLNNNFLTKIEDGL--FSGLSNLWY 167
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT----------------DSGIAYLKGL 203
LN+ W + DM L NL+ L ++ +++ D LKG
Sbjct: 168 LNLGWNLLVVLPDMV-FHDLLNLRELVLAGNRLVYLQPSLFLSLGELKELDLSGNSLKG- 225
Query: 204 SISSVIFILCSMIIRLFCLHVFLTS--------LQKLTLLNLEGCPVTAACLDSLSALGS 255
I + +F +L+ H +++ ++ L L+L +TA D+ L S
Sbjct: 226 -IKANVFTRQQKTHKLYLNHNHISTVAPRAFSGMKNLRWLDLSHNRLTALYEDTFFGLPS 284
Query: 256 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
L L L+ L+ F + L LNLG N+I +GL LE L+L+ +
Sbjct: 285 LNVLRLSNNSLTSLRPRIFKDLQFLVELNLGQNKIKILLERTFEGLAQLELLSLNHNNVQ 344
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375
+ + GL N+ + LS + S GL L S+++ + +S + AGLSS
Sbjct: 345 EIRPGSFLGLLNVAVINLSGNCLKSLAEHCFKGLGKLHSLHMESSCLSHIKPQMFAGLSS 404
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435
++ L L +I + T L GL LDL ++T KNL L + +
Sbjct: 405 IRRLFLQNNEIVAIENHSFTDLHGLLELDLRSNKLTHLTTRSFTGLKNLSYLLLSSNQIL 464
Query: 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
+ + L L+LS N L T ++ L+ L L++ N+ + + + L P
Sbjct: 465 TISPEVFSPVQQLQWLDLSDN-QLKALTEDIFLPLSSLRYLSLKNNCLKTISVNFLIPPP 523
Query: 496 NLRSLTL 502
++ L L
Sbjct: 524 TMQQLWL 530
>gi|223698883|gb|ACN19162.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 112
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 113 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 168
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 169 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 223
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -----NISPLAGLTALT 235
>gi|298360360|gb|ADI77759.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|130774769|gb|ABO32399.1| InlA [Listeria monocytogenes]
gi|130774773|gb|ABO32401.1| InlA [Listeria monocytogenes]
gi|167861932|gb|ACA05665.1| InlA [Listeria monocytogenes]
gi|167861992|gb|ACA05695.1| InlA [Listeria monocytogenes]
gi|167861994|gb|ACA05696.1| InlA [Listeria monocytogenes]
gi|167861998|gb|ACA05698.1| InlA [Listeria monocytogenes]
gi|167862004|gb|ACA05701.1| InlA [Listeria monocytogenes]
gi|167862034|gb|ACA05716.1| InlA [Listeria monocytogenes]
gi|194326169|emb|CAQ77243.1| internalin A [Listeria monocytogenes]
gi|298359894|gb|ADI77526.1| internalin A [Listeria monocytogenes]
gi|298360034|gb|ADI77596.1| internalin A [Listeria monocytogenes]
gi|298360110|gb|ADI77634.1| internalin A [Listeria monocytogenes]
gi|298360112|gb|ADI77635.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|428320680|ref|YP_007118562.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428244360|gb|AFZ10146.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 360
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 156/320 (48%), Gaps = 33/320 (10%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D C R + L N K LN+K I D+ PLS T L +L + ++++D
Sbjct: 57 DTSECDRANELLSNTK------ELNLKNLQII---DISPLSSFTQLTNLILGSNQISD-- 105
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL 256
IA L+ L+ + I + I+ + L +SL LT+L L+ ++ + L+ L L
Sbjct: 106 IAPLQSLTNLKTLVIDVNQILDISPL----SSLINLTVLVLDTNQISD--ISPLAGLTDL 159
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
L L ++SD K + +L L L N+I+D + L+ LT L++L L + I D
Sbjct: 160 TALVLFDNKISDITPVK--NLTNLNALILYNNQISD--IAPLENLTELQTLYLYNNKISD 215
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
+ L L NL L L ++ S L L LTNL + L ISD S L L++L
Sbjct: 216 --ITPLASLKNLTTLFLFGNEI--SDLTPLEALTNLNKLVLFQNKISDIS--PLTSLTNL 269
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
LNL QI+D ++ L SLT LT L LF I+DS A L+ NL L++ ++D
Sbjct: 270 IELNLGNNQISD--ISPLKSLTNLTELYLFNNPISDSSA--LQALNNLFLLDLYNNQISD 325
Query: 437 AGVKHIKDLSSLTLLNLSQN 456
+ ++ L LT L+L N
Sbjct: 326 --ISSLESLHKLTTLDLRGN 343
>gi|219821366|gb|ACL37822.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|130774755|gb|ABO32392.1| InlA [Listeria monocytogenes]
gi|130774767|gb|ABO32398.1| InlA [Listeria monocytogenes]
gi|298359732|gb|ADI77445.1| internalin A [Listeria monocytogenes]
gi|298360004|gb|ADI77581.1| internalin A [Listeria monocytogenes]
gi|298360478|gb|ADI77818.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|290972876|ref|XP_002669176.1| predicted protein [Naegleria gruberi]
gi|284082720|gb|EFC36432.1| predicted protein [Naegleria gruberi]
Length = 390
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 133/289 (46%), Gaps = 36/289 (12%)
Query: 253 LGSLFYL---NLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLN 308
G L YL +++ LSD+ +LK L++ N +IT+ + + + L L+
Sbjct: 23 FGELKYLTSLDISNKHLSDEYIATIGNWDTLKELDVSLNSDITERGIGIISEKSLLNKLS 82
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI------ 362
+ S I +G ++ + NL L + T + ++ +S + L +I++SF I
Sbjct: 83 VHSMTISTKGFELISRMKNLTDLNIMQTVLDIEKIKFISEMEQLTAIDISFNNIGTDELG 142
Query: 363 -------------------SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
SDG+ + + L L L+++ QI G+ + L LTHL
Sbjct: 143 LICKLEKLRILKANGNQINSDGA-KLIKDLKHLTHLSINNNQIGKEGVKCIGELEHLTHL 201
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
+ RI D G Y+ + L L I G+ GVK++ LS L L++ N + KT
Sbjct: 202 AVGSNRIKDKGLKYIGRLQRLNFLSIYDNGIKGKGVKYLSSLSRLVTLDIHSNGIDSSKT 261
Query: 464 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 512
+LIS +T L SL++S++ ++ K + NL+ LT ++ ND+
Sbjct: 262 TKLISEMTQLRSLDISDNYFGNS----FKCITNLKQLT--KLNISENDL 304
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 158/349 (45%), Gaps = 6/349 (1%)
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLSISS 207
+N L L SL+I ++D + + LK L +S S +T+ GI + S+ +
Sbjct: 21 LNFGELKYLTSLDIS-NKHLSDEYIATIGNWDTLKELDVSLNSDITERGIGIISEKSLLN 79
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
+ + SM I + ++ ++ LT LN+ + + +S + L ++++ +
Sbjct: 80 KLSV-HSMTISTKGFEL-ISRMKNLTDLNIMQTVLDIEKIKFISEMEQLTAIDISFNNIG 137
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D K+ L++L N+I + +K L +L L++++ IG EG+ + L +
Sbjct: 138 TDELGLICKLEKLRILKANGNQINSDGAKLIKDLKHLTHLSINNNQIGKEGVKCIGELEH 197
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L L + ++ GL+++ L L +++ GI ++ L+ LS L +L++ + I
Sbjct: 198 LTHLAVGSNRIKDKGLKYIGRLQRLNFLSIYDNGIKGKGVKYLSSLSRLVTLDIHSNGID 257
Query: 388 DTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
+ L S +T L LD+ +S + N K L L I LTD I LS
Sbjct: 258 SSKTTKLISEMTQLRSLDISDNYFGNSFKC-ITNLKQLTKLNISENDLTDKFASSISQLS 316
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495
LT L++ N + + E+ L L L++S+++ + L K
Sbjct: 317 QLTYLDIRGNEIIYEGFKEICEKLEYLTYLDLSDNQTNEKAISFLASFK 365
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/366 (20%), Positives = 163/366 (44%), Gaps = 31/366 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+S ++D + + + L+ LD + I++ G+ + S L LS +
Sbjct: 29 LTSLDISNKHLSDEYIATIGNWDTLKELDVSLNSDITERGIGIISEKSLLNKLSVH-SMT 87
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+ +G + + + NL L++ + + + + +L +++I + N TD ++ +
Sbjct: 88 ISTKGFELISRMKNLTDLNIMQTVLDIEKIKFISEMEQLTAIDISFNNIGTD-ELGLICK 146
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L L+ L+ + +++ G +K L+ LT L++
Sbjct: 147 LEKLRILKANGNQINSDGAKLIK--------------------------DLKHLTHLSIN 180
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
+ + + L L +L + ++ D G + ++ L L++ N I + + +L
Sbjct: 181 NNQIGKEGVKCIGELEHLTHLAVGSNRIKDKGLKYIGRLQRLNFLSIYDNGIKGKGVKYL 240
Query: 299 KGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
L+ L +L++ S GI L + + L+ L++SD G+S + ++ L L +N+
Sbjct: 241 SSLSRLVTLDIHSNGIDSSKTTKLISEMTQLRSLDISDNYFGNS-FKCITNLKQLTKLNI 299
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAA 416
S ++D ++ LS L L++ +I G + L LT+LDL + + +
Sbjct: 300 SENDLTDKFASSISQLSQLTYLDIRGNEIIYEGFKEICEKLEYLTYLDLSDNQTNEKAIS 359
Query: 417 YLRNFK 422
+L +FK
Sbjct: 360 FLASFK 365
>gi|219821273|gb|ACL37760.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT ++ L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRISELGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L L+NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNNQIAD--ITPLANLSNLT 87
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|294358387|gb|ADE73846.1| InlA [Listeria monocytogenes]
Length = 800
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 186/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T + L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQVGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 50/177 (28%)
Query: 342 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 397
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 144
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 512
IS L+GL+SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|223698748|gb|ACN19072.1| truncated internalin A [Listeria monocytogenes]
gi|223698961|gb|ACN19214.1| truncated internalin A [Listeria monocytogenes]
Length = 491
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|219821261|gb|ACL37752.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|149052067|gb|EDM03884.1| insulin-like growth factor binding protein, acid labile subunit,
isoform CRA_b [Rattus norvegicus]
Length = 603
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 184/475 (38%), Gaps = 49/475 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAIT-AQGMKAFAGLINLV 134
NL SLDF + + L L GL NL L RN A G+ + +
Sbjct: 95 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYHLHLERNRLRNLAVGLFTHTPSLASL 151
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 152 SLSSNLLGRLEEGL--FQGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLTY 208
Query: 195 SGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQKL 232
A GL S+ + +F+ + +L+ +T+ ++ L
Sbjct: 209 LQPALFCGLGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPRAFLGMKAL 268
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 269 RWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQ 328
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+GL LE L L+ I + + +GL N+ + LS + S R GL L
Sbjct: 329 LGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKL 388
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S++L + + L AGLS L+ L L I+ +L L+ L LDL R+T
Sbjct: 389 HSLHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTH 448
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+ +L L + LT + + L L++S N +L L S L
Sbjct: 449 LPRQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHN-HLETLAEGLFSSLGR 507
Query: 473 LVSLNVSNSRITS----AGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L L++ N+ + + GL L PLK LR L++ V ++
Sbjct: 508 LRYLSLRNNSLQTFSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562
>gi|441432501|ref|YP_007354543.1| hypothetical protein Moumou_00581 [Acanthamoeba polyphaga
moumouvirus]
gi|440383581|gb|AGC02107.1| hypothetical protein Moumou_00581 [Acanthamoeba polyphaga
moumouvirus]
Length = 488
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 195/458 (42%), Gaps = 105/458 (22%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
+ +L+L++C I G K L ++ +NI WC + +S+ L L N+ + +S S +
Sbjct: 64 IYELNLKKCNNITG--TGFKYLKNIKKINISWCRKLINSE---LQYLNNVIKINLSRSNI 118
Query: 193 TDSGIAYL-----------------------KGLSISSVIFILCSMIIRL-FCLHVFLTS 228
D G+ YL ++ SSV + +I++ +C H+ +
Sbjct: 119 NDEGMKYLLFGKNEIDNLIPRNNIKQINLSNTNITNSSVKLLSNIPVIKINYCPHIDASC 178
Query: 229 LQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQL------------------ 266
L+ L+ +N T +L L ++ L LN QL
Sbjct: 179 LEYLSTVNSLSIRTTIDRDPNLCQNLKYLKNIEILKLNTGQLIGQHLNYLNNLKVLDAQN 238
Query: 267 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGL 325
S + F + L+ L+L FN+ D + TNL L L C GI D L NL L
Sbjct: 239 SQIELKDFDFLKKLEYLSLRFNDYID--YFDIINFTNLRVLKLPHCPGINDNCLKNLGRL 296
Query: 326 --CNLK-CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL 381
NLK CLE+++ SGL HL+ N++++N+S I+D L+ L K+ +
Sbjct: 297 EKINLKRCLEITN-----SGLEHLN---NIKNVNISGCLNITDEGLKHLR-----KAKKI 343
Query: 382 DARQ---ITDTGLAALTSLTGLT--HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 436
+ R ITD GL L ++ + + D+F + + + +T+
Sbjct: 344 NIRYCYGITDNGLKYLKNVEKIKIGYHDMFDITLIEFDHCTSHEINYCEIVRNSSQNITN 403
Query: 437 AGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGLTGLVSLNVSN------SRITSAGLR 489
G+ ++ ++SSL L + C N+TD+ GL+ L++ N + I L
Sbjct: 404 LGLAYLHNVSSLKL----KKCNNITDE---------GLIHLSIYNLELKYCNNIKGKFLE 450
Query: 490 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
HLK + K+ N+IKR S+++PN+ R
Sbjct: 451 HLKN---------ANIKIFGNNIKREYSKNIPNIKFVR 479
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 142/335 (42%), Gaps = 75/335 (22%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL------KVLNLGFNEITDECLVH----- 297
+LS +GS+ YLNL+ +SD+ + S I L + GF + + ++
Sbjct: 36 NLSLIGSIKYLNLSHTNISDNHLQLLSDIYELNLKKCNNITGTGFKYLKNIKKINISWCR 95
Query: 298 ------LKGLTNLESLNLDSCGIGDEGLV----------NLTGLCNLKCLELSDTQVGSS 341
L+ L N+ +NL I DEG+ NL N+K + LS+T + +S
Sbjct: 96 KLINSELQYLNNVIKINLSRSNINDEGMKYLLFGKNEIDNLIPRNNIKQINLSNTNITNS 155
Query: 342 GLRHLSG-------------------LTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL 381
++ LS L+ + S+++ T D +L + L L +++ L L
Sbjct: 156 SVKLLSNIPVIKINYCPHIDASCLEYLSTVNSLSIRTTIDRDPNLCQNLKYLKNIEILKL 215
Query: 382 DARQITDTGLAALTSLT---------------GLTHLDLFGARITDSGAAY-LRNFKNLR 425
+ Q+ L L +L L L+ R D + + NF NLR
Sbjct: 216 NTGQLIGQHLNYLNNLKVLDAQNSQIELKDFDFLKKLEYLSLRFNDYIDYFDIINFTNLR 275
Query: 426 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RI 483
L++ G+ D +K+L L +NL + +T+ LE L + ++N+S I
Sbjct: 276 VLKLPHCPGINDNC---LKNLGRLEKINLKRCLEITNSGLE---HLNNIKNVNISGCLNI 329
Query: 484 TSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS 517
T GL+HL+ K + + C +T N +K L++
Sbjct: 330 TDEGLKHLRKAK---KINIRYCYGITDNGLKYLKN 361
>gi|167862030|gb|ACA05714.1| InlA [Listeria monocytogenes]
Length = 576
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NHIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNHITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 78/177 (44%), Gaps = 50/177 (28%)
Query: 342 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 397
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 398 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457
TGLT LF ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNHITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 458 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 512
IS L+GL SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLTSL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|112961616|gb|ABI28430.1| internalin A [Listeria monocytogenes]
gi|112961649|gb|ABI28452.1| internalin A [Listeria monocytogenes]
gi|112961652|gb|ABI28454.1| internalin A [Listeria monocytogenes]
gi|112961664|gb|ABI28462.1| internalin A [Listeria monocytogenes]
gi|112961691|gb|ABI28480.1| internalin A [Listeria monocytogenes]
gi|112961718|gb|ABI28498.1| internalin A [Listeria monocytogenes]
gi|112961727|gb|ABI28504.1| internalin A [Listeria monocytogenes]
gi|112961748|gb|ABI28518.1| internalin A [Listeria monocytogenes]
gi|112961751|gb|ABI28520.1| internalin A [Listeria monocytogenes]
gi|112961769|gb|ABI28532.1| internalin A [Listeria monocytogenes]
gi|112961775|gb|ABI28536.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 148
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 149 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 204
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 205 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 259
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -----NISPLAGLTALT 271
>gi|29423714|gb|AAO73555.1| internalin A [Listeria monocytogenes]
Length = 743
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 147 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 173
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 174 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 230
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 231 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 285
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 286 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 343
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 344 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 402
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 33 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 88
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 89 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 140
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 196
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 251
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 252 -----NISPLAGLTALT 263
>gi|219821339|gb|ACL37804.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|112959518|gb|ABI27286.1| internalin A [Listeria monocytogenes]
gi|112959520|gb|ABI27287.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 245
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -----NISPLAGLTALT 257
>gi|440802726|gb|ELR23655.1| leucine rich repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 634
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 167/346 (48%), Gaps = 56/346 (16%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVK 135
LQ+L+ ++C I++ GL++LRGL++LTSL SFR +T++G+K+ +L
Sbjct: 280 PQLQTLNLSYCPNITNHGLKYLRGLTSLTSLDLCSPSFR----VTSEGLKSLPS--SLRS 333
Query: 136 LDLERCTRI-HGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
LD+ ++ G+ L+ + L+ LNI CN +T+ M+ L L+++ +S C +
Sbjct: 334 LDISYMDKLTDEGIKALRAVCPDLQVLNISKCNKVTNDGMRFLPA--KLRTIFLSHCYNI 391
Query: 193 TDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL---------QKLTLLNLEGCP-V 242
TD GIA L + L H +SL + L LNL CP +
Sbjct: 392 TDEGIAN------------LAVAVPLLENFHFSYSSLTDDGVRHLPRALKALNLSFCPKL 439
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGL 301
T + L L+ + +++D+G I +LK+ F EITD+ L HL
Sbjct: 440 TNEGMRHLPPHLHTLLLSYS-YKITDEGLRALPPSIATLKLSR--FFEITDDGLQHLP-- 494
Query: 302 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF 359
L SL+L C + D+G+ L L L LS + +G+ L +L ++LSF
Sbjct: 495 PALRSLDLSLCDRVSDQGMSRLPP--TLAELNLSRCDGITDAGVAQLP--RSLGKLDLSF 550
Query: 360 TG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL 403
T ++D LR L +L SLNL + +IT LA L L+HL
Sbjct: 551 TKHVTDACLRSLP--KALTSLNLSSCPEITGEALADLP--LSLSHL 592
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 175/366 (47%), Gaps = 51/366 (13%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---KVTDSGIAYLKGLSISSVIFIL 212
+L++LN+ +C IT+ +K L GLT+L SL + CS +VT G LK L S L
Sbjct: 281 QLQTLNLSYCPNITNHGLKYLRGLTSLTSLDL-CSPSFRVTSEG---LKSLPSS-----L 331
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 271
S+ I + + KLT ++ + A C D L LN+++C ++++DG
Sbjct: 332 RSLDI---------SYMDKLTDEGIKA--LRAVCPD-------LQVLNISKCNKVTNDGM 373
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
L+ +N ITDE + +L + LE+ + + D+G+ +L LK
Sbjct: 374 RFLPAKLRTIFLSHCYN-ITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLPR--ALKA 430
Query: 331 LELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITD 388
L LS ++ + G+RHL + ++ S+ I+D LR L S+ +L L +ITD
Sbjct: 431 LNLSFCPKLTNEGMRHLPPHLHTLLLSYSYK-ITDEGLRALP--PSIATLKLSRFFEITD 487
Query: 389 TGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447
GL L L LDL R++D G + L +L C G+TDAGV + S
Sbjct: 488 DGLQHLP--PALRSLDLSLCDRVSDQGMSRLPPTLAELNLSRC-DGITDAGVAQLP--RS 542
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
L L+LS ++TD L + L SLN+S+ IT L L PL +L L L C+
Sbjct: 543 LGKLDLSFTKHVTDACLRSLP--KALTSLNLSSCPEITGEALADL-PL-SLSHLFLSHCE 598
Query: 507 VTANDI 512
+ I
Sbjct: 599 KVTDKI 604
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 34/248 (13%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
F L+ + L + D+ + +A L + S S +TD G+ HL L++L+
Sbjct: 375 FLPAKLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLPRA--LKALN 432
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HG 146
+FC ++++ G+ HL + LS+ + IT +G++A I +K L R I
Sbjct: 433 LSFCPKLTNEGMRHLPPHLHTLLLSY--SYKITDEGLRALPPSIATLK--LSRFFEITDD 488
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK---- 201
GL +L ++ SL++ C+ ++D M L L L +S C +TD+G+A L
Sbjct: 489 GLQHLPPALR--SLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQLPRSLG 544
Query: 202 --GLSISSVIFILCSMIIRLFCLHVFLTSLQK-LTLLNLEGCP-VTAACLDSLSALGSLF 257
LS + + C L SL K LT LNL CP +T L L SL
Sbjct: 545 KLDLSFTKHVTDAC------------LRSLPKALTSLNLSSCPEITGEALADLPL--SLS 590
Query: 258 YLNLNRCQ 265
+L L+ C+
Sbjct: 591 HLFLSHCE 598
>gi|302768605|ref|XP_002967722.1| hypothetical protein SELMODRAFT_88742 [Selaginella moellendorffii]
gi|300164460|gb|EFJ31069.1| hypothetical protein SELMODRAFT_88742 [Selaginella moellendorffii]
Length = 645
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 132/496 (26%), Positives = 216/496 (43%), Gaps = 55/496 (11%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
L + G + ++ SL+ +DLS S V D GL+ L + ++ L CI+++D
Sbjct: 109 LNRICGFTSTGLRYLSQHCLSLVEMDLSYCSYVEDDGLLGLARLNRIEKLKLTGCIRVTD 168
Query: 97 GGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGL 154
GLE L G L +L + AIT G+K A L+ LDL G+ + L
Sbjct: 169 MGLESLAAGCHRLKTLVLKGCVAITDAGIKLVAARSEELMILDLSFTEVTDEGVKYVSEL 228
Query: 155 MKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFIL 212
L +LN+ CN + D + L +L L +S C V+ GIA L ++ ++
Sbjct: 229 KALRTLNLMACNNVGDRALSYLQENCKSLVDLDVSRCQNVSSVGIAALP--TLLTLHLCH 286
Query: 213 CSMIIRLFCLHVFLTSLQK--LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ---LS 267
CS + FL + + L L+GC T LD ++A G L+ C+ ++
Sbjct: 287 CSQVTE----DAFLDFEKPNGIQTLRLDGCEFTHDSLDRVAA-GCQELKELSLCKSRGVT 341
Query: 268 DDGCEK-FSKIGSLKVLNLG--FNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT 323
D ++ + SLK L+L F+ L + T+++SL L+S + D L +
Sbjct: 342 DKRIDRLITSCKSLKKLDLTCCFDVTEISLLSIARSSTSIKSLKLESSLMVSDNSLPMVF 401
Query: 324 GLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL 381
C+ L+ L+++D + +GL + L + L+F ISD G AG L L+L
Sbjct: 402 ESCHLLEELDVTDCNLTGAGLEPIGNCVLLRVLKLAFCNISDYGIFFVGAGCHKLMELDL 461
Query: 382 -DARQITDTG-LAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
R + D G ++ + L L+L + +RI+D+ + L LEI G L
Sbjct: 462 YRCRSVGDAGVISVVNGCQDLRVLNLSYCSRISDASMTAIARLSKLSQLEIRGCTLVT-- 519
Query: 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG---LRHLKPL 494
+D ++ +G LV L++ +RI G L HL P
Sbjct: 520 ---------------------SDGLTQVAAGCKRLVELDIKRCTRIGDPGLLALEHLCP- 557
Query: 495 KNLRSLTLESCKVTAN 510
+LR + + C +T N
Sbjct: 558 -DLRQINVSYCPLTNN 572
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 203/446 (45%), Gaps = 42/446 (9%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + D + ++A++ L+ +DLS ++VTD G+ ++ + L++L+ C
Sbjct: 181 LKTLVLKGCVAITDAGIKLVAARSEELMILDLSFTEVTDEGVKYVSELKALRTLNLMACN 240
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+ D L +L+ +L L R +++ G+ A L L+ L L C+++ ++
Sbjct: 241 NVGDRALSYLQENCKSLVDLDVSRCQNVSSVGI---AALPTLLTLHLCHCSQVTEDAFLD 297
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYL--KGLSISS 207
+ +++L + C DS + +G LK L + S+ VTD I L S+
Sbjct: 298 FEKPNGIQTLRLDGCEFTHDSLDRVAAGCQELKELSLCKSRGVTDKRIDRLITSCKSLKK 357
Query: 208 VIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLF-------YLN 260
+ C + + L + +S + L LE ++ + S ++L +F L+
Sbjct: 358 LDLTCCFDVTEISLLSIARSS-TSIKSLKLE-----SSLMVSDNSLPMVFESCHLLEELD 411
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEG 318
+ C L+ G E L+VL L F I+D + + G L L+L C +GD G
Sbjct: 412 VTDCNLTGAGLEPIGNCVLLRVLKLAFCNISDYGIFFVGAGCHKLMELDLYRCRSVGDAG 471
Query: 319 LVNLTGLC-NLKCLELSD----TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 373
++++ C +L+ L LS + + + LS L+ LE + SDG + AG
Sbjct: 472 VISVVNGCQDLRVLNLSYCSRISDASMTAIARLSKLSQLEIRGCTLV-TSDGLTQVAAGC 530
Query: 374 SSLKSLNLD-ARQITDTGLAALTSL-TGLTHLDLFGARITDSGA---AYLRNFKNLR--- 425
L L++ +I D GL AL L L +++ +T++G A L +N++
Sbjct: 531 KRLVELDIKRCTRIGDPGLLALEHLCPDLRQINVSYCPLTNNGMMALAKLGCMQNMKLVH 590
Query: 426 ----SLEICGGGLTDAG-VKHIKDLS 446
S+E G L + G +K +K LS
Sbjct: 591 LKNVSMECFGNALLNCGSLKKVKLLS 616
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 174/375 (46%), Gaps = 30/375 (8%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV---TDSGIAYLKGLSISSVIFIL 212
+LE L++ C +TD ++ ++ + I +++ T +G+ YL +S V L
Sbjct: 76 RLEELDLTCCAGVTDENLIHVADKAGKRLAAIYLNRICGFTSTGLRYLSQHCLSLVEMDL 135
Query: 213 CSMIIRLFCLHVF------LTSLQKLTLLNLEGC-PVTAACLDSLSA-LGSLFYLNLNRC 264
+C +V L L ++ L L GC VT L+SL+A L L L C
Sbjct: 136 S------YCSYVEDDGLLGLARLNRIEKLKLTGCIRVTDMGLESLAAGCHRLKTLVLKGC 189
Query: 265 QLSDDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVN 321
D K ++ L +L+L F E+TDE + ++ L L +LNL +C +GD L
Sbjct: 190 VAITDAGIKLVAARSEELMILDLSFTEVTDEGVKYVSELKALRTLNLMACNNVGDRALSY 249
Query: 322 LTGLC-NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
L C +L L++S Q V S G+ L L L + S +++ + + +++L
Sbjct: 250 LQENCKSLVDLDVSRCQNVSSVGIAALPTLLTLHLCHCS--QVTEDAFLDFEKPNGIQTL 307
Query: 380 NLDARQITDTGLAALTS-LTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEI-CGGGLT 435
LD + T L + + L L L +R +TD L + K+L+ L++ C +T
Sbjct: 308 RLDGCEFTHDSLDRVAAGCQELKELSLCKSRGVTDKRIDRLITSCKSLKKLDLTCCFDVT 367
Query: 436 DAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS-LNVSNSRITSAGLRHLKP 493
+ + I + +S+ L L + ++D +L ++ L+ L+V++ +T AGL +
Sbjct: 368 EISLLSIARSSTSIKSLKLESSLMVSDNSLPMVFESCHLLEELDVTDCNLTGAGLEPIGN 427
Query: 494 LKNLRSLTLESCKVT 508
LR L L C ++
Sbjct: 428 CVLLRVLKLAFCNIS 442
>gi|112959438|gb|ABI27246.1| internalin A [Listeria monocytogenes]
gi|112959450|gb|ABI27252.1| internalin A [Listeria monocytogenes]
gi|112959456|gb|ABI27255.1| internalin A [Listeria monocytogenes]
gi|112959496|gb|ABI27275.1| internalin A [Listeria monocytogenes]
gi|112959498|gb|ABI27276.1| internalin A [Listeria monocytogenes]
gi|112959526|gb|ABI27290.1| internalin A [Listeria monocytogenes]
gi|112959528|gb|ABI27291.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 245
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -----NISPLAGLTALT 257
>gi|406831706|ref|ZP_11091300.1| peptidase M56 BlaR1 [Schlesneria paludicola DSM 18645]
Length = 1125
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 130/271 (47%), Gaps = 6/271 (2%)
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L+L+ +T A + L A + L L+ ++D+ + S + + L LG TD+
Sbjct: 803 LHLKNVDLTPASVARLGATKHISTLELSGRSINDELLQAISNL-PIGRLELGSGPYTDDG 861
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
+ L LES+++ I ++ +L L L+ + L +Q S L L+ + +L
Sbjct: 862 VKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRR 921
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDS 413
+ +S T + L S L+S++ D AL L + + IT++
Sbjct: 922 MTISTT---EQLTFDLGPFSELRSVDFTGATFGDDLTHALAEKCPRLEEASIRNSSITNA 978
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
G A L ++LR L + + D I+ + +L L+L+ NC++ D+TL SG + L
Sbjct: 979 GVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLN-NCDIGDRTLAAASGCSRL 1037
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
LN+ ++I++ GL + LKN+R+L+L S
Sbjct: 1038 SYLNLGQTQISNEGLAVIGKLKNIRNLSLWS 1068
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 119/273 (43%), Gaps = 14/273 (5%)
Query: 176 LSGLTNLK--SLQISCSKVTDSGIAYLKG-LSISSVIFILCSMIIRLFCLHVFLTSLQKL 232
L ++NL L++ TD G+ L +++ S+ S+ F L L +L
Sbjct: 839 LQAISNLPIGRLELGSGPYTDDGVKQLANCVALESISIAGPSITNDCFT---HLVRLPRL 895
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
+ L T+ L +L+ + L + ++ + FS++ S+ F +
Sbjct: 896 RGVGLRSSQFTSGVLATLARIPDLRRMTISTTEQLTFDLGPFSELRSVDFTGATFGDDLT 955
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
L + LE ++ + I + G+ L L +L+ L L Q+ + + NL
Sbjct: 956 HALA--EKCPRLEEASIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNL 1013
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARIT 411
E ++L+ I D +L +G S L LNL QI++ GLA + L + +L L+ ++T
Sbjct: 1014 EWLDLNNCDIGDRTLAAASGCSRLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLT 1073
Query: 412 DSGAAYLRNFKNLR-----SLEICGGGLTDAGV 439
D ++L+ + R L++ G +T G+
Sbjct: 1074 DECVSHLKQLPDYRMKFVLHLQLDGTQITKNGI 1106
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+++ G + L+VL L +I D ++ + NLE L+L++C IGD L +G
Sbjct: 975 ITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGC 1034
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK-----SL 379
L L L TQ+ + GL + L N+ +++L S ++D + L L + L
Sbjct: 1035 SRLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLPDYRMKFVLHL 1094
Query: 380 NLDARQITDTGLAALTS 396
LD QIT G+ L +
Sbjct: 1095 QLDGTQITKNGILELQA 1111
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 31/252 (12%)
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
E S+ SL L+L ++T + L ++ +L L I DE L ++ L + L
Sbjct: 793 ETISRDRSLD-LHLKNVDLTPASVARLGATKHISTLELSGRSINDELLQAISNL-PIGRL 850
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391
EL G++ L+ LESI+++ I++ L L L+ + L + Q T L
Sbjct: 851 ELGSGPYTDDGVKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVL 910
Query: 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
A L + L + + T+ L F LRS++ G D DL+
Sbjct: 911 ATLARIPDLRRMTI---STTEQLTFDLGPFSELRSVDFTGATFGD-------DLTH---- 956
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
L++ C ++ ++ NS IT+AG+ L PL++LR L L+ ++
Sbjct: 957 ALAEKCPRLEEA-------------SIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRI 1003
Query: 512 IKRLQSRDLPNL 523
+Q +PNL
Sbjct: 1004 ADSIQK--MPNL 1013
>gi|112961694|gb|ABI28482.1| internalin A [Listeria monocytogenes]
gi|112961706|gb|ABI28490.1| internalin A [Listeria monocytogenes]
gi|112961763|gb|ABI28528.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 148
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 149 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 204
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 205 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 259
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -----NISPLAGLTALT 271
>gi|22347562|gb|AAM95926.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 141
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 142 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 197
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 198 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 252
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -----NISPLAGLTALT 264
>gi|298360122|gb|ADI77640.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALISPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|395539122|ref|XP_003771522.1| PREDICTED: F-box/LRR-repeat protein 13, partial [Sarcophilus
harrisii]
Length = 509
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 187/444 (42%), Gaps = 72/444 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFC 91
LQ+L + Q G+ND M + SL+ ++++ +D+++ L L C NLQ L +C
Sbjct: 83 LQELNVSQCEGLNDDAMRYVLEGCPSLIHLNIAHTDISNGTLKLLSRCFPNLQKLSLAYC 142
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
++ GL +L +G +T+L I+ QG K A G+ +LV D+
Sbjct: 143 RNFTEKGLLYLNLGKGCHKITNLDLSGCTQISVQGFKDIASSCTGIKHLVINDMPTLTDN 202
Query: 139 ------ERCTRI---------HGGLVNLKGLM--KLESLNIKWCNCITDSDMKPL-SGLT 180
ERC I H K L L + ++ N ITD K +
Sbjct: 203 CIKALVERCKSITSVIFIGSPHLSDTAFKYLTDCSLNKVRVEGNNRITDLTFKLMDKHYG 262
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL--TSLQKLTLLNL 237
+L + ++ C ++TD + + L V+ + + I L FL S KL LNL
Sbjct: 263 DLSHIYMTDCERITDVSLKSIANLKNLVVLNLANCIRIGDVGLRSFLGGPSSSKLRELNL 322
Query: 238 EGCPVTAACLDSLSALG----SLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
C + SL+ +G SL YLNL C QL+D G E +K+ +L ++L ITD
Sbjct: 323 THCAQISDL--SLAEMGERCRSLTYLNLRSCTQLTDCGIEFITKLPNLISIDLSVTAITD 380
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN- 351
E L L L+ L++ C + SG++H T
Sbjct: 381 EALTSLSNHKKLKELSVSECEF-----------------------ITDSGVKHFCQSTPI 417
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLD---ARQITDTGLAALTSLTGLTH-LDLFG 407
LE +++SF G + K L+ +L ++ D + L+ H LD+ G
Sbjct: 418 LEHLDVSFCLKLSGEILKALSTKCLRLTSLSIAGCPKMNDLAIRILSKKCHYLHILDVSG 477
Query: 408 -ARITDSGAAY-LRNFKNLRSLEI 429
R+TD Y L+ K LR L++
Sbjct: 478 CVRLTDKAIEYLLQGCKQLRILKM 501
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 117/474 (24%), Positives = 190/474 (40%), Gaps = 108/474 (22%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK-AFAGLI------NLVK 135
L +D+ C Q++ R ++ L SL N ++ Q + F G I N+++
Sbjct: 5 LSVIDWANCAQVNSTW----RSMTYLRSLWSDINFSLVYQIVNDRFIGCILQRWRPNVLR 60
Query: 136 LDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVT 193
L+ C+ + L K L+ LN+ C + D M+ L G +L L I+ + ++
Sbjct: 61 LNFHGCSSLQWPSFKLINQCKNLQELNVSQCEGLNDDAMRYVLEGCPSLIHLNIAHTDIS 120
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
+ + L R F +LQKL+L A C +
Sbjct: 121 NGTLKLLS----------------RCF------PNLQKLSL---------AYCRNFTEK- 148
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKI---GSLKVLNLGFNEITDECLVHLKGLTNLESLNL- 309
L YLNL + GC K + + G ++ GF +I C T ++ L +
Sbjct: 149 -GLLYLNLGK------GCHKITNLDLSGCTQISVQGFKDIASSC-------TGIKHLVIN 194
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
D + D + L C S T V G HLS + +F ++D SL K
Sbjct: 195 DMPTLTDNCIKALVERCK------SITSVIFIGSPHLS--------DTAFKYLTDCSLNK 240
Query: 370 L--AGLSSLKSLNL----------------DARQITDTGLAALTSLTGLTHLDLFGA-RI 410
+ G + + L D +ITD L ++ +L L L+L RI
Sbjct: 241 VRVEGNNRITDLTFKLMDKHYGDLSHIYMTDCERITDVSLKSIANLKNLVVLNLANCIRI 300
Query: 411 TDSGAAYLRNF------KNLRSLEICG-GGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDK 462
D G LR+F LR L + ++D + + + SLT LNL LTD
Sbjct: 301 GDVG---LRSFLGGPSSSKLRELNLTHCAQISDLSLAEMGERCRSLTYLNLRSCTQLTDC 357
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRL 515
+E I+ L L+S+++S + IT L L K L+ L++ C+ +T + +K
Sbjct: 358 GIEFITKLPNLISIDLSVTAITDEALTSLSNHKKLKELSVSECEFITDSGVKHF 411
>gi|255028812|ref|ZP_05300763.1| internalin A [Listeria monocytogenes LO28]
Length = 502
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 196 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 222
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 223 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 279
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 280 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 334
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 335 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 392
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 393 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 451
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 84 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 136
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 137 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 191
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 192 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 249
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 250 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 300
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 301 -NISPLAGLTALT 312
>gi|112961679|gb|ABI28472.1| internalin A [Listeria monocytogenes]
gi|112961682|gb|ABI28474.1| internalin A [Listeria monocytogenes]
gi|112961685|gb|ABI28476.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 148
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 149 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 204
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 205 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 259
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -----NISPLAGLTALT 271
>gi|112959446|gb|ABI27250.1| internalin A [Listeria monocytogenes]
gi|112959466|gb|ABI27260.1| internalin A [Listeria monocytogenes]
gi|112959470|gb|ABI27262.1| internalin A [Listeria monocytogenes]
gi|112959474|gb|ABI27264.1| internalin A [Listeria monocytogenes]
gi|112959476|gb|ABI27265.1| internalin A [Listeria monocytogenes]
gi|112959478|gb|ABI27266.1| internalin A [Listeria monocytogenes]
gi|112959484|gb|ABI27269.1| internalin A [Listeria monocytogenes]
gi|112959486|gb|ABI27270.1| internalin A [Listeria monocytogenes]
gi|112959492|gb|ABI27273.1| internalin A [Listeria monocytogenes]
gi|112959494|gb|ABI27274.1| internalin A [Listeria monocytogenes]
gi|112959504|gb|ABI27279.1| internalin A [Listeria monocytogenes]
gi|112959516|gb|ABI27285.1| internalin A [Listeria monocytogenes]
gi|112959532|gb|ABI27293.1| internalin A [Listeria monocytogenes]
gi|112959534|gb|ABI27294.1| internalin A [Listeria monocytogenes]
gi|112959540|gb|ABI27297.1| internalin A [Listeria monocytogenes]
gi|112959544|gb|ABI27299.1| internalin A [Listeria monocytogenes]
gi|112959550|gb|ABI27302.1| internalin A [Listeria monocytogenes]
gi|112959554|gb|ABI27304.1| internalin A [Listeria monocytogenes]
gi|112959558|gb|ABI27306.1| internalin A [Listeria monocytogenes]
gi|112959560|gb|ABI27307.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 245
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -----NISPLAGLTALT 257
>gi|112959506|gb|ABI27280.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 245
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -----NISPLAGLTALT 257
>gi|112959452|gb|ABI27253.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 245
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -----NISPLAGLTALT 257
>gi|27574254|pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
gi|27574256|pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574257|pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574258|pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 68 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 121
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 122 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 173
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 174 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 200
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 257
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 258 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 312
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 313 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 370
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 62 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 114
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 115 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 169
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 170 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 227
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 278
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 279 -NISPLAGLTALT 290
>gi|112961619|gb|ABI28432.1| internalin A [Listeria monocytogenes]
gi|112961637|gb|ABI28444.1| internalin A [Listeria monocytogenes]
gi|112961655|gb|ABI28456.1| internalin A [Listeria monocytogenes]
gi|112961658|gb|ABI28458.1| internalin A [Listeria monocytogenes]
gi|112961766|gb|ABI28530.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 148
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 149 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 204
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 205 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 259
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -----NISPLAGLTALT 271
>gi|112959552|gb|ABI27303.1| internalin A [Listeria monocytogenes]
gi|112959556|gb|ABI27305.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 134
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 135 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 190
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 191 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 245
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -----NISPLAGLTALT 257
>gi|112961697|gb|ABI28484.1| internalin A [Listeria monocytogenes]
gi|112961709|gb|ABI28492.1| internalin A [Listeria monocytogenes]
gi|112961730|gb|ABI28506.1| internalin A [Listeria monocytogenes]
gi|112961760|gb|ABI28526.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 43 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 95
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 96 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 150
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 151 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 208
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 209 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 259
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -NISPLAGLTALT 271
>gi|112961646|gb|ABI28450.1| internalin A [Listeria monocytogenes]
gi|112961721|gb|ABI28500.1| internalin A [Listeria monocytogenes]
gi|112961757|gb|ABI28524.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 149
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 150 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 205
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 206 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 259
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 ----NISPLAGLTALT 271
>gi|254828935|ref|ZP_05233622.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|130774797|gb|ABO32413.1| InlA [Listeria monocytogenes]
gi|130774811|gb|ABO32418.1| InlA [Listeria monocytogenes]
gi|194239388|emb|CAQ76834.1| internalin A [Listeria monocytogenes]
gi|258601346|gb|EEW14671.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|298360424|gb|ADI77791.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|3093474|gb|AAC15252.1| insulin-like growth factor binding protein complex acid-labile
subunit [Rattus norvegicus]
Length = 603
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 184/475 (38%), Gaps = 49/475 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAIT-AQGMKAFAGLINLV 134
NL SLDF + + L L GL NL L RN A G+ + +
Sbjct: 95 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYYLHLERNRLRNLAVGLFTHTPSLASL 151
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 152 SLSSNLLGRLEEGL--FQGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLTY 208
Query: 195 SGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQKL 232
A GL S+ + +F+ + +L+ +T+ ++ L
Sbjct: 209 LQPALFCGLGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPRAFLGMKAL 268
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 269 RWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQ 328
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+GL LE L L+ I + + +GL N+ + LS + S R GL L
Sbjct: 329 LGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKL 388
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S++L + + L AGLS L+ L L I+ +L L+ L LDL R+T
Sbjct: 389 HSLHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTH 448
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+ +L L + LT + + L L++S N +L L S L
Sbjct: 449 LPRQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHN-HLETLAEGLFSSLGR 507
Query: 473 LVSLNVSNSRITS----AGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L L++ N+ + + GL L PLK LR L++ V ++
Sbjct: 508 LRYLSLRNNSLQTFSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562
>gi|168043924|ref|XP_001774433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674285|gb|EDQ60796.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 139/441 (31%), Positives = 196/441 (44%), Gaps = 39/441 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL+S+DLSG S L + ++L SL+ N C ++ E L L++LTSL+
Sbjct: 88 TSLISLDLSGCSNLTSLPNELDNLTSLTSLNINGCSSLTSLPNE-LGNLTSLTSLNINEC 146
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+++T+ L +L+ LDL C+ + L L L L SLN+ C +T S L
Sbjct: 147 SSLTSLP-NELGNLTSLISLDLSGCSNLTSLLNELHNLASLTSLNLSGCPSLT-SLPNEL 204
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
LT+L SL +S CS +T S++S+ CS L L L +L LT +
Sbjct: 205 GNLTSLISLDLSGCSNLTSLPNELDNFTSLTSLNINGCS---SLTSLPNELGNLTSLTSI 261
Query: 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
NL C + + L L SL N++ C + K+ SL NL +
Sbjct: 262 NLSWCSNLTSLPNELGNLASLTSFNISECWKLISLPNELGKLTSLTSFNLSWCSSLTSLP 321
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L L +L SLNL C NLT L N EL ++ S L LSG +NL S+
Sbjct: 322 NELGHLVSLTSLNLSECS-------NLTSLPN----ELG--KLTSLILLDLSGCSNLTSL 368
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415
+L L+SL SLN++ + L +LT LT L + S
Sbjct: 369 P-----------NELGNLTSLTSLNINGSSNLTSLPNELGNLTSLTSLHISECMRLTSLP 417
Query: 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 475
L N K+L SL + + + +L SLT L LS+ +LT EL LT L S
Sbjct: 418 NELGNLKSLTSLILSECSSLTSLPNELGNLKSLTSLILSECSSLTSLPNEL-GNLTSLTS 476
Query: 476 LNVSNSRITSAGLRHLKPLKN 496
LN+S G RHL L N
Sbjct: 477 LNLS-------GCRHLTSLPN 490
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 144/452 (31%), Positives = 190/452 (42%), Gaps = 34/452 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL+S+D+SG CSNL SL S L +L G SNLTSL +
Sbjct: 40 TSLISLDISG-------------CSNLISLPNELHNLASLTSL-NLSGCSNLTSLPNELD 85
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N L +L+ LDL C+ + L L L SLNI C+ +T S L
Sbjct: 86 N------------LTSLISLDLSGCSNLTSLPNELDNLTSLTSLNINGCSSLT-SLPNEL 132
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFC-LHVFLTSLQKLTL 234
LT+L SL I+ CS +T S+ S+ CS + L LH +L LT
Sbjct: 133 GNLTSLTSLNINECSSLTSLPNELGNLTSLISLDLSGCSNLTSLLNELH----NLASLTS 188
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
LNL GCP + + L L SL L+L+ C + SL LN+
Sbjct: 189 LNLSGCPSLTSLPNELGNLTSLISLDLSGCSNLTSLPNELDNFTSLTSLNINGCSSLTSL 248
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L LT+L S+NL C L L +L +S+ S L LT+L S
Sbjct: 249 PNELGNLTSLTSINLSWCSNLTSLPNELGNLASLTSFNISECWKLISLPNELGKLTSLTS 308
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
NLS+ +L L SL SLNL + L LT L LDL G S
Sbjct: 309 FNLSWCSSLTSLPNELGHLVSLTSLNLSECSNLTSLPNELGKLTSLILLDLSGCSNLTSL 368
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
L N +L SL I G + + +L+SLT L++S+ LT EL L L
Sbjct: 369 PNELGNLTSLTSLNINGSSNLTSLPNELGNLTSLTSLHISECMRLTSLPNEL-GNLKSLT 427
Query: 475 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
SL +S ++ L LK+L SL L C
Sbjct: 428 SLILSECSSLTSLPNELGNLKSLTSLILSECS 459
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 184/446 (41%), Gaps = 58/446 (13%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L L+ +TSL+ +++T+ L +L+ LD+ C+ + L L L S
Sbjct: 10 KELVNLTFITSLNLSGCSSLTSLP-NELGNLTSLISLDISGCSNLISLPNELHNLASLTS 68
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSMIIR 218
LN+ C+ +T S L LT+L SL +S CS +T
Sbjct: 69 LNLSGCSNLT-SLPNELDNLTSLISLDLSGCSNLTS------------------------ 103
Query: 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
L L +L LT LN+ GC + + L L SL LN+N C + +
Sbjct: 104 ---LPNELDNLTSLTSLNINGCSSLTSLPNELGNLTSLTSLNINECSSLTSLPNELGNLT 160
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG--------IGD---------EGLVN 321
SL L+L L L L +L SLNL C +G+ G N
Sbjct: 161 SLISLDLSGCSNLTSLLNELHNLASLTSLNLSGCPSLTSLPNELGNLTSLISLDLSGCSN 220
Query: 322 LTGLCN-------LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
LT L N L L ++ +S L LT+L SINLS+ +L L+
Sbjct: 221 LTSLPNELDNFTSLTSLNINGCSSLTSLPNELGNLTSLTSINLSWCSNLTSLPNELGNLA 280
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
SL S N+ + L LT LT +L S L + +L SL +
Sbjct: 281 SLTSFNISECWKLISLPNELGKLTSLTSFNLSWCSSLTSLPNELGHLVSLTSLNLSECSN 340
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 494
+ + L+SL LL+LS NLT EL LT L SLN++ S ++ L L
Sbjct: 341 LTSLPNELGKLTSLILLDLSGCSNLTSLPNEL-GNLTSLTSLNINGSSNLTSLPNELGNL 399
Query: 495 KNLRSLTLESC-KVTA--NDIKRLQS 517
+L SL + C ++T+ N++ L+S
Sbjct: 400 TSLTSLHISECMRLTSLPNELGNLKS 425
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 122/293 (41%), Gaps = 33/293 (11%)
Query: 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 274
M +L L L +L +T LNL GC + + L L SL L+++ C +
Sbjct: 1 MCSKLTSLPKELVNLTFITSLNLSGCSSLTSLPNELGNLTSLISLDISGCSNLISLPNEL 60
Query: 275 SKIGSLKVLNLG----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ SL LNL + +E L LT+L SL+L C L L +L
Sbjct: 61 HNLASLTSLNLSGCSNLTSLPNE----LDNLTSLISLDLSGCSNLTSLPNELDNLTSLTS 116
Query: 331 LELSDTQVGSSGLRHLSGLTNLESIN----------------------LSFTGISDGS-- 366
L ++ +S L LT+L S+N L +G S+ +
Sbjct: 117 LNINGCSSLTSLPNELGNLTSLTSLNINECSSLTSLPNELGNLTSLISLDLSGCSNLTSL 176
Query: 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426
L +L L+SL SLNL + L +LT L LDL G S L NF +L S
Sbjct: 177 LNELHNLASLTSLNLSGCPSLTSLPNELGNLTSLISLDLSGCSNLTSLPNELDNFTSLTS 236
Query: 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
L I G + + +L+SLT +NLS NLT EL L L S N+S
Sbjct: 237 LNINGCSSLTSLPNELGNLTSLTSINLSWCSNLTSLPNEL-GNLASLTSFNIS 288
>gi|112961622|gb|ABI28434.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 155 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 181
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 182 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 238
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 239 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 293
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 294 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 351
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 352 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 410
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 41 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 96
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 97 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 148
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 149 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 204
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 205 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 259
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 260 -----NISPLAGLTALT 271
>gi|112959508|gb|ABI27281.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 141 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 167
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 168 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 224
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 225 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 279
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 280 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 337
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 338 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 396
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 29 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 81
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 82 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 136
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 137 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 194
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 195 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 245
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 246 -NISPLAGLTALT 257
>gi|332030619|gb|EGI70307.1| F-box/LRR-repeat protein 14 [Acromyrmex echinatior]
Length = 837
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 151/294 (51%), Gaps = 41/294 (13%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYLK 201
LKG+ LE+LN+ C ITD SG+TN L L +S C +VTD+ ++ +
Sbjct: 498 LKGVPNLEALNLSGCYNITD------SGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIA 551
Query: 202 GL--SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSA 252
++ + C I L + L+KL L+L C + A L+ +A
Sbjct: 552 QFLKNLEHLELGGCCNITNTGLL-LIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRETA 610
Query: 253 LG--SLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNE-ITDECLVHLKGLTNLESL 307
G +L +L+L CQ LSD+ S + +LK +NL F ITD + HL +++L L
Sbjct: 611 DGNLALEHLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLREL 670
Query: 308 NLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGIS 363
NL SC I D G+ L G + L++S ++G L H+S GL NL+S++LS IS
Sbjct: 671 NLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQIS 730
Query: 364 DGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSG 414
D + K+A L++LN+ ++TD GL + S+ L +DL+G +IT SG
Sbjct: 731 DEGICKIA----LETLNIGQCSRLTDRGLHTVAESMKNLKCIDLYGCTKITTSG 780
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 142/319 (44%), Gaps = 80/319 (25%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA +L ++L G ++T++GL+ + L+ LD C +SD G+ H
Sbjct: 542 VTDTSLSRIAQFLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAH 601
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLES 159
L GL N TA G A L L L+ C R+ L ++ GL L+S
Sbjct: 602 LAGL-----------NRETADGNLA------LEHLSLQDCQRLSDEALRHVSLGLTTLKS 644
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GLSISSVIFILCSMI 216
+N+ +C CITDS +K L+ +++L+ L + SC ++D G+AYL G I+S+ C I
Sbjct: 645 INLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKI 704
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
+H+ L NL+ L+L+ CQ+SD+G K +
Sbjct: 705 GDQALVHI------SQGLFNLKS-------------------LSLSACQISDEGICKIA- 738
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELS 334
LE+LN+ C + D GL + + NLKC++L
Sbjct: 739 ---------------------------LETLNIGQCSRLTDRGLHTVAESMKNLKCIDLY 771
Query: 335 D-TQVGSSGLRHLSGLTNL 352
T++ +SGL + L L
Sbjct: 772 GCTKITTSGLERIMKLPQL 790
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 121/248 (48%), Gaps = 44/248 (17%)
Query: 298 LKGLTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSG 348
LKG+ NLE+LNL C I D G+ N L L C +++DT + R
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQEYPSLIELNLSLCKQVTDTSLS----RIAQF 553
Query: 349 LTNLESI------NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--- 398
L NLE + N++ TG+ L GL LK L+L + ++D G+A L L
Sbjct: 554 LKNLEHLELGGCCNITNTGL----LLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGLNRET 609
Query: 399 -----GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSS 447
L HL L R++D ++ L+S+ +C +TD+GVKH+ +SS
Sbjct: 610 ADGNLALEHLSLQDCQRLSDEALRHVSLGLTTLKSINLSFCVC---ITDSGVKHLARMSS 666
Query: 448 LTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLES 504
L LNL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +
Sbjct: 667 LRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSA 726
Query: 505 CKVTANDI 512
C+++ I
Sbjct: 727 CQISDEGI 734
>gi|441473145|emb|CCQ22899.1| Internalin-A [Listeria monocytogenes N53-1]
Length = 455
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 181/411 (44%), Gaps = 86/411 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAG 438
L +LT +T L L T++ Y N KN+ I ++D G
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG 451
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|219821258|gb|ACL37750.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 175/402 (43%), Gaps = 84/402 (20%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + A L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
D ++ L KLT NLE T + ++ L
Sbjct: 163 D-------------------------------ISVLAKLT--NLESLIATNNQISDITPL 189
Query: 254 G---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
G +L L+LN QL D G + + +L L+L N+I++ L L GLT L L L
Sbjct: 190 GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 245
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GS 366
+ I + + L GL L LEL++ Q+ + +S L NL + L F ISD S
Sbjct: 246 ANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSS 301
Query: 367 LRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L K LA L+++ L+ QI+D L L +LT +T L L
Sbjct: 302 LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEW 359
Query: 411 TDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
T+ Y N KN+ I ++D G D++
Sbjct: 360 TNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 324
DG E + +L +N GFN++TD + LK LT L + +++ I D L NLTG
Sbjct: 34 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 88
Query: 325 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L NL LELS + S + LSGLTNL+ LSF G L+
Sbjct: 89 LTLFNNQITDIDALKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 143
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
LA L++L+ L++ + +++D ++ L LT L L +I+D L NL L
Sbjct: 144 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|85679234|gb|ABC72033.1| InlA [Listeria monocytogenes]
Length = 794
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 121/419 (28%), Positives = 183/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISDGS--------------------LRKLAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD S + LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSNLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 143
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 -NISPLAGLTALT 319
>gi|158429248|pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 67 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 121 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 172
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 173 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 199
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 200 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 256
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 257 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 311
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 312 YLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD--LTP 369
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 370 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 428
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 61 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 113
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 114 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 168
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 169 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 226
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 227 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 277
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 278 -NISPLAGLTALT 289
>gi|158429246|pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 170/387 (43%), Gaps = 61/387 (15%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSI 205
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD + + L+ L I
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 180
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
SS S++ + LT+L+ L N + +T L L +L L+LN Q
Sbjct: 181 SSNKVSDISVLAK-------LTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQ 228
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
L D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 229 LKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGL 282
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------ 369
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 283 TALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
Query: 370 ----LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN----- 420
LA L+++ L+ QI+D L L +LT +T L L T++ Y N
Sbjct: 341 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Query: 421 -FKNLRSLEICGGGLTDAGVKHIKDLS 446
KN+ I ++D G D++
Sbjct: 399 TVKNVTGALIAPATISDGGSYTEPDIT 425
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 127/270 (47%), Gaps = 55/270 (20%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ LN + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTD 165
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 485
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 278
Query: 486 -AGLRHL-------------KPLKNLRSLT 501
AGL L P+ NL++LT
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLT 308
>gi|371942086|gb|AEX60855.1| truncated internaline [Listeria monocytogenes]
gi|371942128|gb|AEX60876.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D + L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSDISV-------------------------------LAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSDGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|356505803|ref|XP_003521679.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 641
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 191/401 (47%), Gaps = 60/401 (14%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMK 125
VTD GL + C L+ L +C++ISD G++ L L F + +T++ ++
Sbjct: 158 VTDIGLAKIAVGCGKLERLSLKWCLEISDLGIDLL--CKKCLDLKFLDVSYLKVTSESLR 215
Query: 126 AFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDM-KPLSGLTNL 182
+ A L+ L + C+ + GL L KG L+++++ C+C++ S + +SG L
Sbjct: 216 SIASLLKLEVFVMVGCSLVDDVGLRFLEKGCPLLKAIDVSRCDCVSSSGLISVISGHGGL 275
Query: 183 KSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV 242
+ L D+G LS S + C L +L++L ++ ++G V
Sbjct: 276 EQL--------DAGYC----LSELSAPLVKC------------LENLKQLRIIRIDGVRV 311
Query: 243 TAACLDSLSA-LGSLFYLNLNRCQ-LSDDGCEKF-SKIGSLKVLNL---------GFNEI 290
+ L ++ SL L L++C +++ G + S G LK+L+L + I
Sbjct: 312 SDFILQTIGTNCKSLVELGLSKCVGVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTI 371
Query: 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CN-LKCLELSD-TQVGSSGLRHLS 347
D C +L L L+SC + E + GL C+ LK L+L+D + V LR+LS
Sbjct: 372 ADSC-------PDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLS 424
Query: 348 GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHL 403
+ L + L T ISD L +A + L+L +I D GLAALTS GLT+L
Sbjct: 425 RCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTSGCKGLTNL 484
Query: 404 DL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 442
+L + RITD G Y+ + L LE+ G +T G+K +
Sbjct: 485 NLSYCNRITDRGLEYISHLGELSDLELRGLSNITSIGIKAV 525
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 135/518 (26%), Positives = 229/518 (44%), Gaps = 71/518 (13%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS-GLIH------L 77
LE F C ++ L L P + D + V+ SQGS+ + L ++ + GL H +
Sbjct: 59 LEKF--CNIETLDLSMCPRIEDGAVSVVLSQGSASWTRGLRRLVLSRATGLGHVGLEMLI 116
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
+ C L+++D + C D L + L L+ + +T G+ A G L +L
Sbjct: 117 RACPMLEAVDVSHCWGYGDREAAALSCAARLRELNMDKCLGVTDIGLAKIAVGCGKLERL 176
Query: 137 DLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS-LQISCSKVT 193
L+ C I ++L K + L+ L++ + +T ++ ++ L L+ + + CS V
Sbjct: 177 SLKWCLEISDLGIDLLCKKCLDLKFLDVSYLK-VTSESLRSIASLLKLEVFVMVGCSLVD 235
Query: 194 DSGIAYL-------KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC 246
D G+ +L K + +S + S +I + H L L L+ P+ C
Sbjct: 236 DVGLRFLEKGCPLLKAIDVSRCDCVSSSGLISVISGHGGLEQLDAGYCLSELSAPLVK-C 294
Query: 247 LDSLSALGSLFYLNLNRCQLSD-------DGCEKFSKIGSLKVLNLGFNEITDECLVHL- 298
L++L L + ++ ++SD C+ ++G K + +T++ +V L
Sbjct: 295 LENLK---QLRIIRIDGVRVSDFILQTIGTNCKSLVELGLSKCVG-----VTNKGIVQLV 346
Query: 299 KGLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGL--TNLES 354
G L+ L+L C I D + + C +L CL+L + + + GL + L+
Sbjct: 347 SGCGYLKILDLTCCRFISDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKE 406
Query: 355 INLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFG-ARI 410
++L+ +G+ D +LR L+ S L L L I+D GLA + + +T LDL+ RI
Sbjct: 407 LDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRI 466
Query: 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470
D G A L +G K LT LNLS +TD+ LE IS L
Sbjct: 467 GDDGLAAL-----------------TSGCK------GLTNLNLSYCNRITDRGLEYISHL 503
Query: 471 TGLVSLNVSN-SRITSAGLRHLK-PLKNLRSLTLESCK 506
L L + S ITS G++ + K L L L+ C+
Sbjct: 504 GELSDLELRGLSNITSIGIKAVAISCKRLADLDLKHCE 541
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 22 EVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKD 79
+++L C+ L L LG ++D + IA + +DL + D GL L
Sbjct: 417 DIALRYLSRCSELVRLKLGLCTNISDIGLAHIACNCPKMTELDLYRCVRIGDDGLAALTS 476
Query: 80 -CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLD 137
C L +L+ ++C +I+D GLE++ L L+ L R + IT+ G+KA A L LD
Sbjct: 477 GCKGLTNLNLSYCNRITDRGLEYISHLGELSDLELRGLSNITSIGIKAVAISCKRLADLD 536
Query: 138 LERCTRI-HGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQ----ISCSK 191
L+ C +I G L + L +N+ +C SDM + NLK LQ + SK
Sbjct: 537 LKHCEKIDDSGFWALAFYSQNLRQINMSYC---IVSDMVLCMLMGNLKRLQDAKLVCLSK 593
Query: 192 VTDSGI 197
V+ G+
Sbjct: 594 VSVKGL 599
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 134/305 (43%), Gaps = 59/305 (19%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
+C +L L + C+ +++ G+ L G L L I+ + A +LV L
Sbjct: 322 NCKSLVELGLSKCVGVTNKGIVQLVSGCGYLKILDLTCCRFISDAAISTIADSCPDLVCL 381
Query: 137 DLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LE C + + GL L+ L++ C+ + D ++ LS + L L++ C+ ++
Sbjct: 382 KLESCDMVTENCLYQLGLNCSLLKELDLTDCSGVDDIALRYLSRCSELVRLKLGLCTNIS 441
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
D G+A++ + K+T L+L C D L+AL
Sbjct: 442 DIGLAHIA-------------------------CNCPKMTELDLYRCVRIGD--DGLAAL 474
Query: 254 GS----LFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
S L LNL+ C +++D G E S +G E++D + L+GL+N+ S+
Sbjct: 475 TSGCKGLTNLNLSYCNRITDRGLEYISHLG----------ELSD---LELRGLSNITSIG 521
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSL 367
+ + I + L +L +LK E ++ SG L+ + NL IN+S+ +SD L
Sbjct: 522 IKAVAISCKRLADL----DLKHCE----KIDDSGFWALAFYSQNLRQINMSYCIVSDMVL 573
Query: 368 RKLAG 372
L G
Sbjct: 574 CMLMG 578
>gi|320165719|gb|EFW42618.1| non-receptor protein kinase [Capsaspora owczarzaki ATCC 30864]
Length = 978
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
TSL L L L G +T + S L L L LN LS F+ + +L L+L
Sbjct: 43 FTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPTSAFTGLTALTQLSL 102
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N+IT GLT L++L L++ I GL L L+LSD+Q+ S
Sbjct: 103 YGNQITTISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLSDSQITSIPANV 162
Query: 346 LSGLTNLESINL-----------SFTG-------------ISDGSLRKLAGLSSLKSLNL 381
S L L +NL +FTG I+ S GL++L L L
Sbjct: 163 FSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALAQLFL 222
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARIT 411
+ QIT +A T LT L L L+G +IT
Sbjct: 223 QSNQITTISASAFTGLTALKQLYLYGNQIT 252
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 98/231 (42%), Gaps = 3/231 (1%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
LT+LQ L+L N + V A SL+AL L L Q++ FS + L +L L
Sbjct: 22 LTALQILSLFNNQISSVAANAFTSLTAL---VQLQLYGNQITTIPASAFSGLSKLSLLQL 78
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N ++ GLT L L+L I GL L+ L L++ + +
Sbjct: 79 NNNWLSAIPTSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANA 138
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+GLT L ++LS + I+ + L +L LNL ++ +A T LT LT L +
Sbjct: 139 FAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTM 198
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
+G RIT A L L + +T L++L L L N
Sbjct: 199 YGNRITTISANAFTGLNALAQLFLQSNQITTISASAFTGLTALKQLYLYGN 249
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 1/237 (0%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+ + L +L L+L Q+S F+ + +L L L N+IT GL+ L L
Sbjct: 18 AFTGLTALQILSLFNNQISSVAANAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQ 77
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L++ + TGL L L L Q+ + +GLT L+++ L+ I+ +
Sbjct: 78 LNNNWLSAIPTSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAAN 137
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
AGL++L L+L QIT +SL L L+L+ ++ + L L
Sbjct: 138 AFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLT 197
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
+ G +T L++L L L N +T + +GLT L L + ++IT+
Sbjct: 198 MYGNRITTISANAFTGLNALAQLFLQSN-QITTISASAFTGLTALKQLYLYGNQITT 253
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 24/209 (11%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GLS L+ L NN ++A AF GL L +L L + T I
Sbjct: 58 QITTIPASAFSGLSKLSLLQLN-NNWLSAIPTSAFTGLTALTQLSLYGNQITTISASA-- 114
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIF 210
GL L++L + N IT +GLT L L +S S++T SI + +F
Sbjct: 115 FAGLTALQALYLN-NNTITTIAANAFAGLTALNWLDLSDSQIT----------SIPANVF 163
Query: 211 ILCSMIIRLFCLHVFL--------TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
+ +L + +L T L LT L + G +T ++ + L +L L L
Sbjct: 164 SSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALAQLFLQ 223
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
Q++ F+ + +LK L L N+IT
Sbjct: 224 SNQITTISASAFTGLTALKQLYLYGNQIT 252
>gi|421898414|ref|ZP_16328780.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum MolK2]
gi|206589620|emb|CAQ36581.1| lrr-gala family type III effector protein (gala 2) [Ralstonia
solanacearum MolK2]
Length = 1051
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 176/403 (43%), Gaps = 33/403 (8%)
Query: 57 SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 647 PSVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNL 704
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I G +A L R T L +LN+ N I D+ +
Sbjct: 705 S-GNRIGNAGARA-----------LGRNT-------------VLTALNVS-ANPIGDAGV 738
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
+ L+ +L SL++ + ++GIA L ++ + I + + L Q L
Sbjct: 739 QALADSQSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAE--LARNQTLA 796
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L C +T L+ + SL L + + D G ++ SL+ LNL N IT +
Sbjct: 797 SLKANACGLTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQ 856
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L+ L SL++ G GD G + L+ L L+L +GS+G + L+ L
Sbjct: 857 GLRPLELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLI 916
Query: 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
S++L I + + LA L SLN+ ++ D +AL LT LD+ R++
Sbjct: 917 SLDLRGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQ 976
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
A L L SL I + G + + + SLT L+ N
Sbjct: 977 AARALAGNATLTSLNISHNHIGPDGAQALAESPSLTFLDARAN 1019
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 142/322 (44%), Gaps = 34/322 (10%)
Query: 226 LTSLQKLTL--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
L L +L L L+L G + + +L++ SL LNL+ ++ + G + L L
Sbjct: 667 LAVLARLPLESLDLSGTRIGDREVQALASSTSLTSLNLSGNRIGNAGARALGRNTVLTAL 726
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
N+ N I D + L +L SL L GIG+ G+ L L+ L++S +
Sbjct: 727 NVSANPIGDAGVQALADSQSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSA 786
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-------- 395
L+ L S+ + G+++G ++LA + SL++L + + I DTG+ A+
Sbjct: 787 AELARNQTLASLKANACGLTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTL 846
Query: 396 -------SLTG---------LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
+L G LT LD+ G D GA L + L SL++ G+ AG
Sbjct: 847 NLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGA 906
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGLRHLKPLKNLR 498
+ + +L L+L N D L + TG L SLNVS+ ++ L
Sbjct: 907 QGLAANRTLISLDLRGNTIDVDAAKALAN--TGCLTSLNVSDCKLDDEAASALA-----E 959
Query: 499 SLTLESCKVTANDIKRLQSRDL 520
SLTL S V+ N + +R L
Sbjct: 960 SLTLTSLDVSVNRLSGQAARAL 981
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 156/377 (41%), Gaps = 30/377 (7%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + ++G L + L +L+ + I D G++ L
Sbjct: 685 IGDREVQALASS-TSLTSLNLSGNRIGNAGARALGRNTVLTALNVS-ANPIGDAGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 DSQSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
C +T+ + L+ + +L++L++ + + D+G+
Sbjct: 802 ACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGV-------------------------- 834
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ + L LNL P+T L L +L L+++ D G SK +L L
Sbjct: 835 LAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGALLLSKNRALTSL 894
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
LGFN I L L SL+L I + L L L +SD ++
Sbjct: 895 KLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAA 954
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L+ L S+++S +S + R LAG ++L SLN+ I G AL LT L
Sbjct: 955 SALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLNISHNHIGPDGAQALAESPSLTFL 1014
Query: 404 DLFGARITDSGAAYLRN 420
D I ++GA L N
Sbjct: 1015 DARANGIGEAGARALEN 1031
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 104/259 (40%), Gaps = 25/259 (9%)
Query: 222 LHVF--LTSLQ---KLTLLNLEGCPVT------AACLDSLSALGSLFYL--------NLN 262
LH + LTSLQ TL +L+ P T +AC + ++ YL N+
Sbjct: 102 LHHYPNLTSLQLEGNFTLQDLKALPATLRHLDLSACTGGAKSFEAIAYLAGLPLESLNVA 161
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
+ DDG + SL+ LN I L L SL+L GIGDEG L
Sbjct: 162 GADIGDDGARLLAANPSLRALNAANGGIGAAGARALAESPVLASLDLTRNGIGDEGARAL 221
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
G +L L + + V G R L+G L +++L G+ + AG +
Sbjct: 222 AGSRSLTSLAVLNCLVTDVGARALAGNGTLTALDLGNLITETGNELEQAGY------DRT 275
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
A +IT G AL LT L + G D G L + L SL + +T A +
Sbjct: 276 ANEITARGAWALAQNRSLTSLSIQGNLCGDGGVQALARNRTLTSLNVAYTDMTPASATEL 335
Query: 443 KDLSSLTLLNLSQNCNLTD 461
LT L++ N L D
Sbjct: 336 ARNPVLTSLSVRWNYGLGD 354
>gi|294358393|gb|ADE73849.1| InlA [Listeria monocytogenes]
Length = 800
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL + G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKEIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 42/252 (16%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448
L L +LT L LD+ +++D + L NL SL ++D + + L++L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 449 TLLNLSQN-----------CNLTD--------KTLELISGLTGLVSLNVSNSRITSAGLR 489
L+L+ N NLTD L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKEIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS----- 308
Query: 490 HLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 NISPLAGLTALT 320
>gi|385800049|ref|YP_005836453.1| hypothetical protein [Halanaerobium praevalens DSM 2228]
gi|309389413|gb|ADO77293.1| conserved repeat domain protein [Halanaerobium praevalens DSM 2228]
Length = 2607
Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats.
Identities = 109/359 (30%), Positives = 155/359 (43%), Gaps = 73/359 (20%)
Query: 32 ALQDLCLGQYPGVNDK----WMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSL 86
A +D YPG+NDK + VI S+L L G D G I L + NL +L
Sbjct: 1017 AFKDQSGNAYPGMNDKTSWNFKTVINIPDSNLKQQILDRGIDNNGDGEISLSESVNLYTL 1076
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+F +ISD L GL + TSL KL L +I
Sbjct: 1077 K-SFYTEISD-----LSGLEHFTSLD----------------------KLALYGGKKI-S 1107
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS 206
L L+ L L SL + N I + D L+ LTNL L +S +K++D +
Sbjct: 1108 DLSPLQNLTNLNSLTLTE-NVINNIDY--LANLTNLTRLDLSSNKISDISV--------- 1155
Query: 207 SVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQ 265
L +L KLT L L +T + L L L L +L+L +
Sbjct: 1156 -------------------LANLTKLTELVLGSNIITDESDLSVLENLTELEHLSLEENE 1196
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
+S+ + S + L L+LG + D + LK LT L LNL+S I DE L L+
Sbjct: 1197 ISN--IDSLSNLSKLNYLHLGSTNVED--ISSLKNLTALNFLNLNSTYINDEDLTILSNF 1252
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDA 383
+L L L + S + ++ LTNL+ + L + ISD +R L+ L+ L SL NL+A
Sbjct: 1253 KSLTELYLQSSNDKISDISVVADLTNLKYLYLGYNEISD--IRALSDLTKLTSLYNLNA 1309
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 76/253 (30%), Positives = 117/253 (46%), Gaps = 30/253 (11%)
Query: 249 SLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
SLS +L+ L ++SD G E F+ + L + G +I+D L L+ LTNL SL
Sbjct: 1066 SLSESVNLYTLKSFYTEISDLSGLEHFTSLDKLALY--GGKKISD--LSPLQNLTNLNSL 1121
Query: 308 NLDSCGIGD-EGLVNLTGLCNL--------------KCLELSDTQVGS------SGLRHL 346
L I + + L NLT L L +L++ +GS S L L
Sbjct: 1122 TLTENVINNIDYLANLTNLTRLDLSSNKISDISVLANLTKLTELVLGSNIITDESDLSVL 1181
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
LT LE ++L IS+ + L+ LS L L+L + + D +++L +LT L L+L
Sbjct: 1182 ENLTELEHLSLEENEISN--IDSLSNLSKLNYLHLGSTNVED--ISSLKNLTALNFLNLN 1237
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
I D L NFK+L L + + + + DL++L L L N + L
Sbjct: 1238 STYINDEDLTILSNFKSLTELYLQSSNDKISDISVVADLTNLKYLYLGYNEISDIRALSD 1297
Query: 467 ISGLTGLVSLNVS 479
++ LT L +LN +
Sbjct: 1298 LTKLTSLYNLNAN 1310
Score = 56.6 bits (135), Expect = 3e-05, Method: Composition-based stats.
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 14/222 (6%)
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGI 362
ES+NL + + +L+GL + L+ G S L L LTNL S+ L+ I
Sbjct: 1069 ESVNLYTLKSFYTEISDLSGLEHFTSLDKLALYGGKKISDLSPLQNLTNLNSLTLTENVI 1128
Query: 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNF 421
++ + LA L++L L+L + +I+D ++ L +LT LT L L ITD S + L N
Sbjct: 1129 NN--IDYLANLTNLTRLDLSSNKISD--ISVLANLTKLTELVLGSNIITDESDLSVLENL 1184
Query: 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 481
L L L + + +I LS+L+ LN + + + + LT L LN++++
Sbjct: 1185 TELEHLS-----LEENEISNIDSLSNLSKLNYLHLGSTNVEDISSLKNLTALNFLNLNST 1239
Query: 482 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
I L L K+L L L+S +DI + DL NL
Sbjct: 1240 YINDEDLTILSNFKSLTELYLQSSNDKISDISVVA--DLTNL 1279
>gi|85679240|gb|ABC72036.1| InlA [Listeria monocytogenes]
Length = 794
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +K++D ++ L KLT N
Sbjct: 203 ANLTTLERLDISSNKLSD-------------------------------ISVLAKLT--N 229
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 230 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 286
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 287 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 341
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 342 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 399
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 400 LANLTRITQLGLNDQAWTNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 458
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 91 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 143
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 144 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 198
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 199 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 256
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 257 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 307
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 308 -NISPLAGLTALT 319
>gi|433448864|ref|ZP_20411729.1| Internalin A [Weissella ceti NC36]
gi|429539253|gb|ELA07290.1| Internalin A [Weissella ceti NC36]
Length = 1042
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 25/303 (8%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLSISSVIFIL 212
L+K+ESLN+ + +D+ L NLK L ++ + ++ + + LS S+ F
Sbjct: 67 LLKIESLNLTYSGV---TDLSGLEEAKNLKWLDLTGNAISSLEPLGQVHNLSFLSLRFNK 123
Query: 213 CSMIIRLFCLHVFLTSLQKLTLL-NLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDG 270
I L L T++++L L+ N G P A + L+ L +L N QL D
Sbjct: 124 TKDIPDLAPLKT--TAIKELNLVGNDYGLEPQKMAAISHLTTLETLEMQNNKLTQLPD-- 179
Query: 271 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
S++ +L+ L + N++TD + +K + L L ++S I D ++ L NL+
Sbjct: 180 ---LSQLTNLRFLGVAGNKLTD--VSGVKNMVRLTGLEVNSNQITD--FEPISHLTNLER 232
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDT 389
L + + + SS + L LT L+ N S G+S+ + AG+ ++SL +D QI+D
Sbjct: 233 LHVGNNR--SSDISSLKTLTKLKKGNFSQMGLSNEQMTVFAGMKDMESLAIDFNDQISD- 289
Query: 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSL 448
L++L+ LT LT LD +T A L NL++L ++D V K++ +LSSL
Sbjct: 290 -LSSLSQLTNLTTLDFSKDGVT--SLAPLAGLTNLQTLGFSNNKVSDISVLKNMPNLSSL 346
Query: 449 TLL 451
T+L
Sbjct: 347 TML 349
>gi|194755888|ref|XP_001960211.1| GF13252 [Drosophila ananassae]
gi|190621509|gb|EDV37033.1| GF13252 [Drosophila ananassae]
Length = 492
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 142/325 (43%), Gaps = 87/325 (26%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 208 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 249
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 250 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 309
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 310 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 369
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK--GL 203
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL G
Sbjct: 370 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 429
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 263
I+S+ C I S Q LT + L L L+LN+
Sbjct: 430 GINSLDVSFCDKI-----------SDQALTHI--------------AQGLYRLRSLSLNQ 464
Query: 264 CQLSDDGCEKFSK-IGSLKVLNLGF 287
CQ++D G K +K + L+ LN+G
Sbjct: 465 CQITDHGMLKIAKALHELENLNIGH 489
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 137/311 (44%), Gaps = 78/311 (25%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF-----AGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ G+ A +G N+ ++L + L L
Sbjct: 218 RGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADMNLGHAFSV--------DLPNL 269
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
++L++ C ITD+ + ++ L NL++L++ C +T++G+
Sbjct: 270 KTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLL----------------- 312
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTA-------ACLDSLSALGSL--FYLNLNRCQ- 265
+ L+KL LNL C + A +A G+L YL L CQ
Sbjct: 313 --------LIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQR 364
Query: 266 LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNL 322
LSD+ ++ + SLK +NL F +TD L HL + LE LNL SC I D G+ L
Sbjct: 365 LSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 424
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLN 380
T G SG + S+++SF ISD +L +A GL L+SL+
Sbjct: 425 T--------------EGGSG---------INSLDVSFCDKISDQALTHIAQGLYRLRSLS 461
Query: 381 LDARQITDTGL 391
L+ QITD G+
Sbjct: 462 LNQCQITDHGM 472
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 34/237 (14%)
Query: 300 GLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLT 350
G+ L SLNL C +G V+L L L C +++DT +G +HL L
Sbjct: 238 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLE 296
Query: 351 NLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLT 401
LE N++ TG+ L GL LK LNL + I+D G+ L + G
Sbjct: 297 TLELGGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNL 352
Query: 402 HLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 454
L+ G R++D ++ + +L+S L C +TD+G+KH+ + L LNL
Sbjct: 353 QLEYLGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLR 411
Query: 455 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 508
N++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 412 SCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 468
>gi|326315343|ref|YP_004233015.1| putative leucine-rich-repeat type III effector protein (GalA1-like)
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323372179|gb|ADX44448.1| putative leucine-rich-repeat type III effector protein (GalA1-like)
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 472
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 19/250 (7%)
Query: 172 DMKPLSGLT---------------NLKSLQIS-CSKVTDSGIAYLKGLSISSVIFILCSM 215
DM+ L GLT L+SL++S C+ +T G+++L ++ L M
Sbjct: 43 DMRGLRGLTLRGDFCDDDLRLLPATLQSLELSDCTGLTARGLSWLL--ALPLATLALRRM 100
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
+R +H L +L L L P+ A +L+ GSL L L+ C L+ +G S
Sbjct: 101 ALRPEAVHA-LARHSRLATLELAHVPLDAEGARALAGAGSLATLRLDHCGLTPEGLAAVS 159
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335
+ L L N + E L GL +L L+LD +G EG + + L+ L L+
Sbjct: 160 SLPRLSRLQARGNGLGPEAAPALPGLRSLVELDLDGNRLGAEGAAVIARMQGLRTLSLNH 219
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395
+G G R L+ L L+++++ I LA ++L++L+L ++ D G+ AL
Sbjct: 220 NALGDDGARALAALPGLQTLSVQANQIGAAGAAALARGAALRALDLHRNRLGDAGVRALA 279
Query: 396 SLTGLTHLDL 405
+ T LDL
Sbjct: 280 TGTRWQQLDL 289
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 136/341 (39%), Gaps = 46/341 (13%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+G +A AG +L L L+ C GL + L +L L + N + L G
Sbjct: 126 LDAEGARALAGAGSLATLRLDHCGLTPEGLAAVSSLPRLSRLQAR-GNGLGPEAAPALPG 184
Query: 179 LTNLKSLQISCSKVTDSG---IAYLKGLSISSVIF-ILCSMIIRLFCLHVFLTSLQKLTL 234
L +L L + +++ G IA ++GL S+ L R L +L L
Sbjct: 185 LRSLVELDLDGNRLGAEGAAVIARMQGLRTLSLNHNALGDDGAR------ALAALPGLQT 238
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE- 293
L+++ + AA +L+ +L L+L+R +L D G + + L+L N I E
Sbjct: 239 LSVQANQIGAAGAAALARGAALRALDLHRNRLGDAGVRALATGTRWQQLDLARNGIGAEG 298
Query: 294 -------------CLVHLKGLT----------NLESLNLDSCGIGDEGLVNLTGLCNLKC 330
+ H +L L+ C IGD G L+ L
Sbjct: 299 AAALASLPALDALVIAHNPLGDAGAGALAASDSLRFLDAGDCRIGDTGASALSRCPQLAS 358
Query: 331 LELSDT-----QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
L L+++ ++G G L+ +LE I+L + R A L+ L L Q
Sbjct: 359 LVLNNSSAEGVRIGERGALALAASPSLEEIDLEGHAVGSAGARAFAANPRLRRLGLARNQ 418
Query: 386 ITDTGLAALTSLTGLTHLDLFGARITD------SGAAYLRN 420
+ + G AL L LDL+ R+TD GA +LR
Sbjct: 419 VGNAGAHALAGSASLASLDLWDNRVTDKALHSRGGAPWLRR 459
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 100/437 (22%), Positives = 162/437 (37%), Gaps = 63/437 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ LQSL+ + C ++ GL L L+ + R A+ + + A A L L+L
Sbjct: 66 ATLQSLELSDCTGLTARGLSWL--LALPLATLALRRMALRPEAVHALARHSRLATLELAH 123
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
G L G L +L + C +T + +S L L LQ + + L
Sbjct: 124 VPLDAEGARALAGAGSLATLRLDHCG-LTPEGLAAVSSLPRLSRLQARGNGLGPEAAPAL 182
Query: 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
GL + L L+L+G + A ++ + L L+
Sbjct: 183 PGL--------------------------RSLVELDLDGNRLGAEGAAVIARMQGLRTLS 216
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320
LN L DDG + + L+ L++ N+I L L +L+L +GD G+
Sbjct: 217 LNHNALGDDGARALAALPGLQTLSVQANQIGAAGAAALARGAALRALDLHRNRLGDAGVR 276
Query: 321 NLTGLCNLKCLELSDTQVGSSG--------------LRH-----LSGLTNLESINLSF-- 359
L + L+L+ +G+ G + H S +L F
Sbjct: 277 ALATGTRWQQLDLARNGIGAEGAAALASLPALDALVIAHNPLGDAGAGALAASDSLRFLD 336
Query: 360 --------TGISDGSLRKLAGLSSLKSLNLDAR--QITDTGLAALTSLTGLTHLDLFGAR 409
TG S +L + L+SL N A +I + G AL + L +DL G
Sbjct: 337 AGDCRIGDTGAS--ALSRCPQLASLVLNNSSAEGVRIGERGALALAASPSLEEIDLEGHA 394
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
+ +GA LR L + + +AG + +SL L+L N +TDK L G
Sbjct: 395 VGSAGARAFAANPRLRRLGLARNQVGNAGAHALAGSASLASLDLWDN-RVTDKALHSRGG 453
Query: 470 LTGLVSLNVSNSRITSA 486
L + ++ A
Sbjct: 454 APWLRRRGPAPRWVSRA 470
>gi|290998998|ref|XP_002682067.1| predicted protein [Naegleria gruberi]
gi|284095693|gb|EFC49323.1| predicted protein [Naegleria gruberi]
Length = 427
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 145/321 (45%), Gaps = 20/321 (6%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLV 149
++I + G++ + L L SL + + + + + L +LD+ R C R +GG
Sbjct: 114 LKIGEDGIKAISQLKQLKSLYLYAD--VDSNALNGVFEMTQLTELDINRKQCHRWNGGFK 171
Query: 150 NLKGLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSG---IAYLKGLSI 205
LK L L+ L C CI D+ + +S L L L I+ + + G I LK L+I
Sbjct: 172 KLKQLTNLKKLCAVGC-CIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTI 230
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYL--NLN 262
+ + C + I + L S+ +L L C + +S L +L +L +LN
Sbjct: 231 LDISY--CGVCIPH---NEGLESISELINLTYLDCANNGLRSIGPISKLENLTFLRVSLN 285
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
R D+ K K+ +L V G+N I+D+ + L SL + IGD+ ++
Sbjct: 286 RISSLDESIVKLKKLTNLDV---GYNSISDQSAEVFSSMKQLTSLFIQENNIGDKSAKSI 342
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
+ + LK L + V G + +S + NL +++ I D + L L+ LK+L +
Sbjct: 343 SEISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGAKSLTRLTKLKTLRIA 402
Query: 383 ARQITDTGLAALTSLTGLTHL 403
I++ G+ L L T++
Sbjct: 403 QNNISEEGMMTLKKLKYSTNV 423
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 178/407 (43%), Gaps = 45/407 (11%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + DS + ++ CS + N + S LE + L+N +R +Q +
Sbjct: 26 SYIDDSKFL-MQTCSFISKQWLNIILNYSKFLLEFKKKLTNKMESLLKR-----SQFLDC 79
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G +++ + C+R G + L KL+ +K I + +K +S L LKSL
Sbjct: 80 IVG-VHVETFGSKDCSRYCGIFAKMSQLTKLDISGLK----IGEDGIKAISQLKQLKSLY 134
Query: 187 ISCSKVTDSGIAYLKGLSISSVIFILCSM----IIRLFCLHVFLTSLQKLT-LLNLEGCP 241
+ D L G +F + + I R C H + +KL L NL+
Sbjct: 135 L----YADVDSNALNG------VFEMTQLTELDINRKQC-HRWNGGFKKLKQLTNLKKLC 183
Query: 242 VTAACLD------SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
C+D S+S L L L++ L DG + K+ +L +L++ + + C+
Sbjct: 184 AVGCCIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTILDISYCGV---CI 240
Query: 296 VHLKGLTNL-ESLNLDSCGIGDEGLVNL---TGLCNLKCLELSDTQVGS--SGLRHLSGL 349
H +GL ++ E +NL + GL ++ + L NL L +S ++ S + L L
Sbjct: 241 PHNEGLESISELINLTYLDCANNGLRSIGPISKLENLTFLRVSLNRISSLDESIVKLKKL 300
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
TNL+ + + ISD S + + L SL + I D +++ ++ L +L +
Sbjct: 301 TNLD---VGYNSISDQSAEVFSSMKQLTSLFIQENNIGDKSAKSISEISQLKNLCIDSNI 357
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
++D GA + +NL L+I + D G K + L+ L L ++QN
Sbjct: 358 VSDKGAKSISTMENLTELDIRNNDIGDDGAKSLTRLTKLKTLRIAQN 404
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 13/235 (5%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356
LK LTNL+ L C I E + ++ L L L ++ + S G + + L NL ++
Sbjct: 173 LKQLTNLKKLCAVGCCIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTILD 232
Query: 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL---TSLTGLTHLDLFGARITDS 413
+S+ G+ L +S L +NL + GL ++ + L LT L + RI+
Sbjct: 233 ISYCGVCIPHNEGLESISEL--INLTYLDCANNGLRSIGPISKLENLTFLRVSLNRISSL 290
Query: 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473
+ ++ K L +L++ ++D + + LT L + +N N+ DK+ + IS ++ L
Sbjct: 291 DESIVK-LKKLTNLDVGYNSISDQSAEVFSSMKQLTSLFIQEN-NIGDKSAKSISEISQL 348
Query: 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528
+L + ++ ++ G + + ++NL L + + NDI ++ L L +
Sbjct: 349 KNLCIDSNIVSDKGAKSISTMENLTELDIRN-----NDIGDDGAKSLTRLTKLKT 398
>gi|219821354|gb|ACL37814.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + + GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPIAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 56/270 (20%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 485
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 254
Query: 486 -AG-------------LRHLKPLKNLRSLT 501
AG L + P+ NL++LT
Sbjct: 255 IAGLTALTNLELNENQLEDISPISNLKNLT 284
>gi|219821255|gb|ACL37748.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 139
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 140 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 195
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|290976114|ref|XP_002670786.1| predicted protein [Naegleria gruberi]
gi|284084348|gb|EFC38042.1| predicted protein [Naegleria gruberi]
Length = 175
Score = 70.1 bits (170), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 93/179 (51%), Gaps = 4/179 (2%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SL++ S IG EG ++ + L L++ ++G G +++S + L S+++
Sbjct: 1 MKQLTSLDIGSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGSKYISEMKQLTSLDIGHN 60
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I + ++G+ SL SLN+ QI G ++ + LT LD+ +I GA ++
Sbjct: 61 QIGVEGAKYISGMKSLTSLNIGHNQIGVEGSKYISEMKQLTSLDIGHNQIGVEGAKFISG 120
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479
K+L SL I + G K+I +++ LT LN+ N + +E ++G+ S+N++
Sbjct: 121 MKSLTSLNIYSNEIGVEGAKYISEMNQLTSLNIDYN----EIGVEGAKFISGMKSINIT 175
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 84/171 (49%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L L++G NEI E ++ + L SL++ S IG EG ++ + L L++ Q+G
Sbjct: 4 LTSLDIGSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGSKYISEMKQLTSLDIGHNQIG 63
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
G +++SG+ +L S+N+ I + ++ + L SL++ QI G ++ +
Sbjct: 64 VEGAKYISGMKSLTSLNIGHNQIGVEGSKYISEMKQLTSLDIGHNQIGVEGAKFISGMKS 123
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
LT L+++ I GA Y+ L SL I + G K I + S+ +
Sbjct: 124 LTSLNIYSNEIGVEGAKYISEMNQLTSLNIDYNEIGVEGAKFISGMKSINI 174
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 88/172 (51%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
+++LT L++ + +S + L L++ ++ +G + S++ L L++G N
Sbjct: 1 MKQLTSLDIGSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGSKYISEMKQLTSLDIGHN 60
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+I E ++ G+ +L SLN+ IG EG ++ + L L++ Q+G G + +SG
Sbjct: 61 QIGVEGAKYISGMKSLTSLNIGHNQIGVEGSKYISEMKQLTSLDIGHNQIGVEGAKFISG 120
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+ +L S+N+ I + ++ ++ L SLN+D +I G ++ + +
Sbjct: 121 MKSLTSLNIYSNEIGVEGAKYISEMNQLTSLNIDYNEIGVEGAKFISGMKSI 172
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 79/152 (51%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+++ +++LT L++ + +S + L L++ Q+ +G + S + SL LN
Sbjct: 21 YISEMKQLTSLDIYSNEIGVEGSKYISEMKQLTSLDIGHNQIGVEGAKYISGMKSLTSLN 80
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+G N+I E ++ + L SL++ IG EG ++G+ +L L + ++G G +
Sbjct: 81 IGHNQIGVEGSKYISEMKQLTSLDIGHNQIGVEGAKFISGMKSLTSLNIYSNEIGVEGAK 140
Query: 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376
++S + L S+N+ + I + ++G+ S+
Sbjct: 141 YISEMNQLTSLNIDYNEIGVEGAKFISGMKSI 172
Score = 56.6 bits (135), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 1/155 (0%)
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
+ L S+++ I + ++ + L SL++ + +I G ++ + LT LD+
Sbjct: 1 MKQLTSLDIGSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGSKYISEMKQLTSLDIGHN 60
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
+I GA Y+ K+L SL I + G K+I ++ LT L++ N + + + IS
Sbjct: 61 QIGVEGAKYISGMKSLTSLNIGHNQIGVEGSKYISEMKQLTSLDIGHN-QIGVEGAKFIS 119
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
G+ L SLN+ ++ I G +++ + L SL ++
Sbjct: 120 GMKSLTSLNIYSNEIGVEGAKYISEMNQLTSLNID 154
Score = 43.9 bits (102), Expect = 0.20, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ +++ G ++ + L SLD QI G +++ G+ +LTSL+
Sbjct: 23 SEMKQLTSLDIYSNEIGVEGSKYISEMKQLTSLDIGHN-QIGVEGAKYISGMKSLTSLNI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K + + L LD+ G + G+ L SLNI + N I
Sbjct: 82 -GHNQIGVEGSKYISEMKQLTSLDIGHNQIGVEGAKFISGMKSLTSLNI-YSNEIGVEGA 139
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
K +S + L SL I +++ G ++ G+
Sbjct: 140 KYISEMNQLTSLNIDYNEIGVEGAKFISGM 169
>gi|158429244|pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 170/387 (43%), Gaps = 61/387 (15%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSI 205
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD + + L+ L I
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
SS S++ + LT+L+ L N + +T L L +L L+LN Q
Sbjct: 181 SSNKVSDISVLAK-------LTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQ 228
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
L D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 229 LKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGL 282
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------ 369
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 283 TALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVS 340
Query: 370 ----LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN----- 420
LA L+++ L+ QI+D L L +LT +T L L T++ Y N
Sbjct: 341 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Query: 421 -FKNLRSLEICGGGLTDAGVKHIKDLS 446
KN+ I ++D G D++
Sbjct: 399 TVKNVTGALIAPATISDGGSYTEPDIT 425
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 55/270 (20%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTD 165
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 485
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 278
Query: 486 -AGLRHL-------------KPLKNLRSLT 501
AGL L P+ NL++LT
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLT 308
>gi|299067412|emb|CBJ38611.1| leucine-rich-repeat type III effector protein (GALA7) [Ralstonia
solanacearum CMR15]
Length = 642
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 149/321 (46%), Gaps = 43/321 (13%)
Query: 246 CLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKI---------------GSLKVLNLGFNE 289
LD L AL +L +L+L+ C + + G + + I L+ LN+
Sbjct: 177 TLDELKALPKTLRHLDLSECDV-NSGAKSHAAIEYLTTVSPHTRTVPFPHLESLNVKGAR 235
Query: 290 ITDECLVHLK-GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
I D L +++L++LN+ GI + G L +L+ L++S ++ + G +HL+
Sbjct: 236 IGDRGAALLADKMSSLKTLNVADGGISEVGAKKLADHKSLESLDMSGNRIDARGAQHLAA 295
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL--- 405
+++++ L G++D + LAG L SL++ I D L AL + L LD+
Sbjct: 296 SESIKTLRLCCCGVTDPGIHALAGNPRLTSLDVSGNYIGDEALHALAASPSLAELDVSCN 355
Query: 406 -------FGARITDSGA-------AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
G R+T++G L+ K L SL+ G D + + + T L
Sbjct: 356 RPFTTIPLGQRVTEAGEMAVALALGLLKREKPLVSLKADGNYFDDTAAEMLAYPPNGT-L 414
Query: 452 NLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
+LS NL + + ++ L SL+++ ++I AG+ L ++LR L + +C+VT
Sbjct: 415 SLSLKSNLIEAAGAQKLAENPTLKSLDLTQNKIDDAGVEALASSRSLRELVVRNCRVTDT 474
Query: 511 DI------KRLQSRDLPNLVS 525
+ + L S DL NLV+
Sbjct: 475 GVAALARNRTLTSLDLGNLVT 495
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 117/280 (41%), Gaps = 26/280 (9%)
Query: 223 HVFLTSLQKLTLLNLEGCPV----TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 278
H L LN++G + A D +S SL LN+ +S+ G +K +
Sbjct: 217 HTRTVPFPHLESLNVKGARIGDRGAALLADKMS---SLKTLNVADGGISEVGAKKLADHK 273
Query: 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 338
SL+ L++ N I HL ++++L L CG+ D G+ L G L L++S +
Sbjct: 274 SLESLDMSGNRIDARGAQHLAASESIKTLRLCCCGVTDPGIHALAGNPRLTSLDVSGNYI 333
Query: 339 GSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAG-------------LSSLKSLNL 381
G L L+ +L +++S FT I G AG L SL
Sbjct: 334 GDEALHALAASPSLAELDVSCNRPFTTIPLGQRVTEAGEMAVALALGLLKREKPLVSLKA 393
Query: 382 DARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
D DT L G L L I +GA L L+SL++ + DAGV+
Sbjct: 394 DGNYFDDTAAEMLAYPPNGTLSLSLKSNLIEAAGAQKLAENPTLKSLDLTQNKIDDAGVE 453
Query: 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
+ SL L + +NC +TD + ++ L SL++ N
Sbjct: 454 ALASSRSLREL-VVRNCRVTDTGVAALARNRTLTSLDLGN 492
>gi|18568225|gb|AAL75967.1|AF467463_1 PPA [Mus musculus]
Length = 184
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 100/170 (58%), Gaps = 11/170 (6%)
Query: 343 LRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSL 397
L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL + I+DTG+ A+ SL
Sbjct: 14 LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSL 73
Query: 398 TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLS 454
L+ LD+ F ++ D AY+ + L+SL +C ++D G+ + ++ + L LN+
Sbjct: 74 R-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIG 132
Query: 455 QNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 502
Q +TDK LELI+ L+ L +++ +RIT GL + L L+ L L
Sbjct: 133 QCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNL 182
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 259 LNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GI 314
L L CQ L+D + S+ + L++LNL F I+D L+HL + +L SLNL SC I
Sbjct: 1 LTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNI 60
Query: 315 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKL 370
D G+++L G L L++S +VG L +++ GL L+S++L ISD + R +
Sbjct: 61 SDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMV 120
Query: 371 AGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL 427
+ L++LN+ +ITD GL + L+ LT +DL+G RIT G + L+ L
Sbjct: 121 RQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVL 180
Query: 428 EI 429
+
Sbjct: 181 NL 182
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 53/224 (23%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 9 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 68
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 69 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 128
Query: 185 LQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I C ++TD G L + L +LT ++L GC
Sbjct: 129 LNIGQCVRITDKG-------------------------LELIAEHLSQLTGIDLYGCT-- 161
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
+++ G E+ +++ LKVLNLG
Sbjct: 162 ---------------------RITKRGLERITQLPCLKVLNLGL 184
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 90/166 (54%), Gaps = 17/166 (10%)
Query: 229 LQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKV--LN 284
L L LLNL C ++ A L LS +GSL LNL C +SD G + +GSL++ L+
Sbjct: 21 LTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGLD 79
Query: 285 LGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL----VNLTGLCNL---KCLELSD 335
+ F +++ D+ L ++ +GL L+SL+L SC I D+G+ + GL L +C+ ++D
Sbjct: 80 VSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITD 139
Query: 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
+ HLS LT ++ T I+ L ++ L LK LNL
Sbjct: 140 KGLELIA-EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKVLNL 182
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFR 114
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL G L+ L
Sbjct: 23 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVS 81
Query: 115 RNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSD 172
+ + Q + A GL L L L C G+ + + + L +LNI C ITD
Sbjct: 82 FCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKG 141
Query: 173 MKPLS-GLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVI 209
++ ++ L+ L + + C+++T G+ + L V+
Sbjct: 142 LELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVL 180
>gi|431892162|gb|ELK02609.1| F-box/LRR-repeat protein 14 [Pteropus alecto]
Length = 412
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 51/300 (17%)
Query: 235 LNLEGCP-VTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLGF-N 288
LNL GC +T L + + SL LNL+ C Q++D + ++ + L+VL LG +
Sbjct: 95 LNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCS 154
Query: 289 EITDECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ- 337
IT+ L+ + GL L+SLNL SC + D G+ +L G+ L+ L L D Q
Sbjct: 155 NITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQK 214
Query: 338 VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL 394
+ L+H+S GLT L +NLSF GISD L L+ + SL+SLNL + I+DTG+ L
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNL 453
+ SL + G ++D G+ + ++ + L LN+
Sbjct: 275 A----------------------------MGSLRLSGLDVSDDGINRMVRQMHGLRTLNI 306
Query: 454 SQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
Q +TDK LELI+ L+ L +++ +RIT GL + L L+ L L ++T ++
Sbjct: 307 GQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSE 366
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 160/353 (45%), Gaps = 73/353 (20%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLKGLSISSVIFILCSM 215
LN+ C ITDS + ++ LK L++ CS +T++G+ L I+ + L S+
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGL-----LLIAWGLQRLKSL 174
Query: 216 IIRLFCLH---VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGC 271
+R C H V + L +T EGC LG L L L CQ L+D
Sbjct: 175 NLR-SCRHLSDVGIGHLAGMTRSAAEGC------------LG-LEQLTLQDCQKLTDLSL 220
Query: 272 EKFSK-IGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCN 327
+ S+ + L++LNL F I+D L+HL + +L SLNL SC I D G+++L G
Sbjct: 221 KHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR 280
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQI 386
L L++SD DG R + + L++LN+ +I
Sbjct: 281 LSGLDVSD----------------------------DGINRMVRQMHGLRTLNIGQCVRI 312
Query: 387 TDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
TD GL + L+ LT +DL+G RIT G + L+ L + +TD+
Sbjct: 313 TDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 365
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 139/276 (50%), Gaps = 49/276 (17%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDG----------GLEHLR---- 103
S++LSG ++TD+GL H +++ S+L++L+ + C QI+D GLE L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 153
Query: 104 -------------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCT 142
GL L SL+ R ++ G+ AG+ + L +L L+ C
Sbjct: 154 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 213
Query: 143 RIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAY 199
++ L ++ +GL L LN+ +C I+D+ + LS + +L+SL + SC ++D+GI +
Sbjct: 214 KLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMH 273
Query: 200 LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSA-LGSLF 257
L S+ L + + ++ + + L LN+ C +T L+ ++ L L
Sbjct: 274 LAMGSLR-----LSGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 328
Query: 258 YLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITD 292
++L C +++ G E+ +++ LKVLNLG ++TD
Sbjct: 329 GIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTD 364
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 36/234 (15%)
Query: 298 LKGLTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSG 348
++G+ N+ESLNL C G+G + ++ L L C +++D+ +G ++L G
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIA-QYLKG 144
Query: 349 LTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT------ 398
L LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 145 LEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEG 200
Query: 399 --GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLN 452
GL L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LN
Sbjct: 201 CLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLN 259
Query: 453 LSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505
L N++D + L G L L+VS+ I R ++ + LR+L + C
Sbjct: 260 LRSCDNISDTGIMHLAMGSLRLSGLDVSDDGIN----RMVRQMHGLRTLNIGQC 309
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 151/322 (46%), Gaps = 51/322 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT----------R 195
Query: 192 VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSL 250
G L+ L++ C + L H+ L L LLNL C ++ A L L
Sbjct: 196 SAAEGCLGLEQLTLQD-----CQKLTDLSLKHIS-RGLTGLRLLNLSFCGGISDAGLLHL 249
Query: 251 SALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLN 308
S +GSL LNL C +SD G + +GSL++ L +++D+ + + + + L +LN
Sbjct: 250 SHMGSLRSLNLRSCDNISDTGIMHLA-MGSLRLSGL---DVSDDGINRMVRQMHGLRTLN 305
Query: 309 LDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
+ C I D+GL + HLS LT ++ T I+ L
Sbjct: 306 IGQCVRITDKGLELIA--------------------EHLSQLTGIDLYGC--TRITKRGL 343
Query: 368 RKLAGLSSLKSLNLDARQITDT 389
++ L LK LNL Q+TD+
Sbjct: 344 ERITQLPCLKVLNLGLWQMTDS 365
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFR 114
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL G L+ L
Sbjct: 229 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD-- 285
Query: 115 RNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDS 171
++ G+ + + L L++ +C RI + L + L +L +++ C IT
Sbjct: 286 ----VSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341
Query: 172 DMKPLSGLTNLKSLQISCSKVTDS 195
++ ++ L LK L + ++TDS
Sbjct: 342 GLERITQLPCLKVLNLGLWQMTDS 365
>gi|167861930|gb|ACA05664.1| InlA [Listeria monocytogenes]
gi|167862036|gb|ACA05717.1| InlA [Listeria monocytogenes]
gi|194239408|emb|CAQ76844.1| internalin A [Listeria monocytogenes]
gi|222543296|gb|ACM66668.1| internalin A [Listeria monocytogenes]
gi|298359976|gb|ADI77567.1| internalin A [Listeria monocytogenes]
gi|298360582|gb|ADI77870.1| internalin A [Listeria monocytogenes]
gi|298360712|gb|ADI77935.1| internalin A [Listeria monocytogenes]
gi|298360716|gb|ADI77937.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ + F G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQVT 198
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|158429242|pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 170/387 (43%), Gaps = 61/387 (15%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSI 205
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD + + L+ L I
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265
SS S++ + LT+L+ L N + +T L L +L L+LN Q
Sbjct: 181 SSNKVSDISVLAK-------LTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQ 228
Query: 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 325
L D G + + +L L+L N+I++ L L GLT L L L + I + + L GL
Sbjct: 229 LKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGL 282
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------------ 369
L LEL++ Q+ + +S L NL + L F ISD SL K
Sbjct: 283 TALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
Query: 370 ----LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN----- 420
LA L+++ L+ QI+D L L +LT +T L L T++ Y N
Sbjct: 341 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Query: 421 -FKNLRSLEICGGGLTDAGVKHIKDLS 446
KN+ I ++D G D++
Sbjct: 399 TVKNVTGALIAPATISDGGSYTEPDIT 425
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 55/270 (20%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 57 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 109
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ + Q+TD
Sbjct: 110 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTD 165
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 166 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 223
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 485
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 224 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISP 278
Query: 486 -AGLRHL-------------KPLKNLRSLT 501
AGL L P+ NL++LT
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLT 308
>gi|38154344|gb|AAR12159.1| internalin A [Listeria monocytogenes]
Length = 685
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|313485081|gb|ADR53011.1| InlA [Listeria monocytogenes]
Length = 800
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ + F G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|158293334|ref|XP_314696.4| AGAP008593-PA [Anopheles gambiae str. PEST]
gi|157016655|gb|EAA10330.4| AGAP008593-PA [Anopheles gambiae str. PEST]
Length = 604
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 139/309 (44%), Gaps = 16/309 (5%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLE 158
L GL N+ SL+ RNN T + L L LDL R + GL+KL
Sbjct: 102 LNGLRNIESLNLSRNNLTTIKSWSDH-DLGTLQVLDLRRNLIRSIDELSFQRYPGLVKL- 159
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSMII 217
SL + + + D KP++ NLK+L + + +T L+GL+ ++ V F
Sbjct: 160 SLAVNFITTVPDGTFKPVA---NLKNLNLGKNLLTTIEEGTLRGLNKLTHVAFHHN---- 212
Query: 218 RLFCLHVF-LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
R+ +H F L +L L+G + + D L L +LN++ +L G F
Sbjct: 213 RIRTIHPFAFVGNGHLKVLQLQGNQLGSFEPDLFGNLPRLTFLNVSSNELETVGNLSFKN 272
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
G L+VL+L +N I KGL +LE+LN+ + L NL+ L+LS
Sbjct: 273 SGDLRVLDLSYNRIGLLEDNSFKGLYDLEALNVSHNQLATVSKYVLKDCANLRDLDLSGN 332
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
++ GL+ S L +NLS I + L L +L+L Q+TD A L S
Sbjct: 333 RLDYVGLKLSSATPRLVRLNLSRNAIGEIERDVFEDLPKLHTLDLAHNQLTDD--AFLWS 390
Query: 397 LTGLTHLDL 405
L L+ L++
Sbjct: 391 LMNLSVLNM 399
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 33/272 (12%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 318
+ +N C L + F + LKVL + + + + L GL N+ESLNL +
Sbjct: 63 IQINHCYLQELPNAIFIRFTDLKVLEICDSRVNNLQDFALNGLRNIESLNLSRNNLTTIK 122
Query: 319 LVNLTGLCNLKCLELSDTQVGSS---GLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 374
+ L L+ L+L + S + GL L S+ ++F T + DG+ + +A
Sbjct: 123 SWSDHDLGTLQVLDLRRNLIRSIDELSFQRYPGLVKL-SLAVNFITTVPDGTFKPVA--- 178
Query: 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEICGGG 433
+LK+LNL +T L L LTH+ RI T A++ N +L+ L++ G
Sbjct: 179 NLKNLNLGKNLLTTIEEGTLRGLNKLTHVAFHHNRIRTIHPFAFVGN-GHLKVLQLQGNQ 237
Query: 434 LTDAGVKHIKDLSSLTLLNLSQN-----CNLTDK------TLEL------------ISGL 470
L +L LT LN+S N NL+ K L+L GL
Sbjct: 238 LGSFEPDLFGNLPRLTFLNVSSNELETVGNLSFKNSGDLRVLDLSYNRIGLLEDNSFKGL 297
Query: 471 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L +LNVS++++ + LK NLR L L
Sbjct: 298 YDLEALNVSHNQLATVSKYVLKDCANLRDLDL 329
>gi|112959464|gb|ABI27259.1| internalin A [Listeria monocytogenes]
Length = 698
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 181/414 (43%), Gaps = 86/414 (20%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 INFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT- 53
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT
Sbjct: 54 -DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTT 106
Query: 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP 241
L+ L IS +KV+D ++ L KLT NLE
Sbjct: 107 LERLDISSNKVSD-------------------------------ISVLAKLT--NLESLI 133
Query: 242 VTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
T + ++ LG +L L+LN QL D G + + +L L+L N+I++ L L
Sbjct: 134 ATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPL 189
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
GLT L L L + I + + L GL L LEL++ Q+ + +S L NL + L
Sbjct: 190 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLY 245
Query: 359 FTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLT 398
F ISD SL K LA L+++ L+ QI+D L L +LT
Sbjct: 246 FNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLT 303
Query: 399 GLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
+T L L T+ Y N KN+ I ++D G D++
Sbjct: 304 RITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 357
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 110/215 (51%), Gaps = 25/215 (11%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
N+I D + L LTNL L L + I D + L NLT NL LELS + S + L
Sbjct: 28 NQIAD--ITPLANLTNLTGLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISAL 80
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
SGLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 81 SGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 135
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 136 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 188
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 189 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 218
>gi|374293090|ref|YP_005040125.1| hypothetical protein AZOLI_2723 [Azospirillum lipoferum 4B]
gi|357425029|emb|CBS87910.1| Conserved protein of unknown function; Leucine-rich repeat domain
[Azospirillum lipoferum 4B]
Length = 1026
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 165/360 (45%), Gaps = 49/360 (13%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGL 203
L L GL L+ LN C+ + SD+ PL+GL L+ L S + V+D SG++ L+ L
Sbjct: 11 LSPLNGLNSLQQLN---CSGTSVSDLSPLNGLRGLQQLDCSLTSVSDLSPLSGLSDLQQL 67
Query: 204 SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLN 262
S SS L+ L L+ L C T+ L LS L L L+ +
Sbjct: 68 SCSSTSV-------------SDLSPLSGLSGLQQLDCSSTSVSDLFPLSGLSGLQQLSCS 114
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
+SD S + L+ L+ ++D L L GL L+ L+ + D L L
Sbjct: 115 STSVSD--LFPLSGLSGLQELSCSGTSVSD--LSPLSGLNGLQQLDCSLTSVSD--LSPL 168
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 382
+GL L+ L S T V S L LSGL+ L+ ++ S T +SD L L+GLS L+ L
Sbjct: 169 SGLSGLQELSCSGTSV--SDLSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCS 224
Query: 383 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
++D L+ L+ L+GL L G + D + L L+ L C V +
Sbjct: 225 GTSVSD--LSPLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQL-YCS-------VTSV 272
Query: 443 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL------NVSNSRITSAGLRHLKPLKN 496
DLS L+ L+ Q + +D ++ + L+GL SL NV I +AG+ +P N
Sbjct: 273 SDLSPLSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPTAGVLSQEPDDN 332
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 161/356 (45%), Gaps = 59/356 (16%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL ++ SG+ V+D L L LQ LD C S L L GLS+L LS +
Sbjct: 19 SLQQLNCSGTSVSD--LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQQLSC---S 70
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + +GL L +LD C+ L L GL L+ L+ C+ + SD+ PL
Sbjct: 71 STSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLS---CSSTSVSDLFPL 124
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
SGL+ L+ ++SCS + S ++ L GL+ LQ+L
Sbjct: 125 SGLSGLQ--ELSCSGTSVSDLSPLSGLN-----------------------GLQQLD--- 156
Query: 237 LEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295
C +T+ L LS L L L+ + +SD S + L+ L+ ++D L
Sbjct: 157 ---CSLTSVSDLSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQELSCSGTSVSD--L 209
Query: 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355
L GL+ L+ L + D L L+GL L+ L S T V L LSGL+ L+ +
Sbjct: 210 SPLSGLSGLQQLYCSGTSVSD--LSPLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQL 265
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
S T +SD L L+GLS L+ L+ ++D L L+ L+ L L L+ I
Sbjct: 266 YCSVTSVSD--LSPLSGLSGLQELSCSDTSVSD--LFPLSGLSSLQELYLYNVEIP 317
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 141/335 (42%), Gaps = 77/335 (22%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS S + S L L S LQ LD C S L L GLS L LS ++ +
Sbjct: 67 LSCSSTSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLSC---SSTSVSD 120
Query: 124 MKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ +GL L +L C+ L L GL L+ L+ C+ + SD+ PLSGL+ L
Sbjct: 121 LFPLSGLSGLQELS---CSGTSVSDLSPLSGLNGLQQLD---CSLTSVSDLSPLSGLSGL 174
Query: 183 KSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV 242
+ ++SCS + S ++ L GLS LQ+L+ C
Sbjct: 175 Q--ELSCSGTSVSDLSPLSGLS-----------------------GLQELS------CSG 203
Query: 243 TAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
T+ L LS L L L + +SD L L GL
Sbjct: 204 TSVSDLSPLSGLSGLQQLYCSGTSVSD--------------------------LSPLSGL 237
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
+ L+ L+ + D L L+GL L+ L S T V S L LSGL+ L+ ++ S T
Sbjct: 238 SGLQQLSCSGTSVND--LSPLSGLSGLQQLYCSVTSV--SDLSPLSGLSGLQELSCSDTS 293
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+SD L L+GLSSL+ L L +I A + S
Sbjct: 294 VSD--LFPLSGLSSLQELYLYNVEIPGIPTAGVLS 326
>gi|343423407|emb|CCD18182.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 518
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 169/381 (44%), Gaps = 42/381 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISD----------------GGLEHLRGLSNLTSLS 112
VTD L L +L L+ C +++D G +RGL L SL
Sbjct: 144 VTDDFLCSLTTSGSLTHLNLTECSRLTDVEPLASIKTLEQVNLSGSFPGVRGLGALGSLP 203
Query: 113 FRR-----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI---KW 164
R + A+T +K + LV+L L C R L ++ L+K+ SL +
Sbjct: 204 RLRELNLKHTAVTDDCLKTLSASKTLVRLFLGDCRR----LTDVTPLVKISSLQVVDLSD 259
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLH 223
C+ IT M L L L ++ + +TD + L S+ S+ C ++ + L
Sbjct: 260 CSGITKG-MGGFGTLPGLYLLSLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVGVLG 318
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
F+T+L++L ++ C A S SAL L L + +++++ + +K L L
Sbjct: 319 -FVTTLREL---DMSECDGVARGFCSFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKL 374
Query: 284 NL-GFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
++ G ++TD CL + LE LN++ C D+GL L GL L+ L +S T VG+
Sbjct: 375 SVAGCKKLTDISCLAQVH---TLEDLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGND 431
Query: 342 GLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
LR + LE L I+D S LA SL LNLD Q TG+ L L L
Sbjct: 432 ELRLVCKSKTLERSELEGCERITDVS--ALAAAQSLMFLNLDKCQKVVTGVGELGKLPAL 489
Query: 401 THLDLFGARITDSGAAYLRNF 421
+ L GA +T+ L+ +
Sbjct: 490 RVISLQGATVTEDDMKSLKMY 510
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 190/439 (43%), Gaps = 63/439 (14%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+S+L ++ +AI G F + L L L R L +L L LN+
Sbjct: 107 GMSSLEEVALHNASAIVHIG--RFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLNLT 164
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
C+ +TD ++PL+ + L+ + +S S ++GL
Sbjct: 165 ECSRLTD--VEPLASIKTLEQVNLSGS------FPGVRGLGA------------------ 198
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
L SL +L LNL+ VT CL +LSA +L L L C+ D KI SL+V+
Sbjct: 199 --LGSLPRLRELNLKHTAVTDDCLKTLSASKTLVRLFLGDCRRLTD-VTPLVKISSLQVV 255
Query: 284 NL-----------GF-------------NEITDECLVHLKGLTNLESLNLDSCGI-GDEG 318
+L GF +TDE L L +LESL++ C + D G
Sbjct: 256 DLSDCSGITKGMGGFGTLPGLYLLSLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVG 315
Query: 319 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378
++ + L+ L++S+ + G S L L S+ ++FT +++ L ++A + L
Sbjct: 316 VLGF--VTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTRVTNECLCEIAKCTQLVK 373
Query: 379 LNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437
L++ +++TD ++ L + L L++ D G L + LR+L + + +
Sbjct: 374 LSVAGCKKLTD--ISCLAQVHTLEDLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGND 431
Query: 438 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 497
++ + +L L +TD + ++ L+ LN+ + G+ L L L
Sbjct: 432 ELRLVCKSKTLERSELEGCERITD--VSALAAAQSLMFLNLDKCQKVVTGVGELGKLPAL 489
Query: 498 RSLTLESCKVTANDIKRLQ 516
R ++L+ VT +D+K L+
Sbjct: 490 RVISLQGATVTEDDMKSLK 508
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 163/382 (42%), Gaps = 71/382 (18%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV--- 224
++ +D++PL G T + SL+ +LK + +V + S + L LHV
Sbjct: 27 LSSADLEPLRGCTAVDSLK------------FLKCRGVMNVEAL--SAVHSLRDLHVDLE 72
Query: 225 ----FLTSLQKLTLL--------NLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGC 271
L +LQ L L NL C V C + SL + L N + G
Sbjct: 73 GELHNLPALQNLPYLKRLFIDNENLRDCDVLPLC-----GMSSLEEVALHNASAIVHIG- 126
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+F ++ L+VL L +TD+ L L +L LNL C L ++ L ++K L
Sbjct: 127 -RFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLNLTECS----RLTDVEPLASIKTL 181
Query: 332 E---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQIT 387
E LS + G GL L L L +NL T ++D L+ L+ +L L L D R++T
Sbjct: 182 EQVNLSGSFPGVRGLGALGSLPRLRELNLKHTAVTDDCLKTLSASKTLVRLFLGDCRRLT 241
Query: 388 DT----------------------GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
D G+ +L GL L L G +TD L ++L
Sbjct: 242 DVTPLVKISSLQVVDLSDCSGITKGMGGFGTLPGLYLLSLTGTALTDEQLQELCASQSLE 301
Query: 426 SLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
SL I LTD GV + +++L L++S+ C+ + S L L SL ++ +R+T
Sbjct: 302 SLSIKRCKLLTDVGV--LGFVTTLRELDMSE-CDGVARGFCSFSALRELRSLYMTFTRVT 358
Query: 485 SAGLRHLKPLKNLRSLTLESCK 506
+ L + L L++ CK
Sbjct: 359 NECLCEIAKCTQLVKLSVAGCK 380
>gi|255025517|ref|ZP_05297503.1| internalin A [Listeria monocytogenes FSL J2-003]
Length = 744
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698952|gb|ACN19208.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 5 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ + F G
Sbjct: 61 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQV 112
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 113 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 168
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 169 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 223
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -----NISPLAGLTALT 235
>gi|171910953|ref|ZP_02926423.1| probable G protein-coupled receptor LGR4 [Verrucomicrobium spinosum
DSM 4136]
Length = 400
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 5/224 (2%)
Query: 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESI 355
H+ L+ +ESLN+ + D+ + L L LK L+ ++ ++ +GL L+GL LE+
Sbjct: 143 HVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAF 202
Query: 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSG 414
+ TG+ + K G ++L ++ I D GL L L + L A+ D+G
Sbjct: 203 SFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLAHAKCGDAG 262
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474
A L L+ LE+ T + H+ + SL L L + + + I G+T L
Sbjct: 263 VAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQLGDGLDAPE-GIAAIKGMTTLR 320
Query: 475 SLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
L ++N++ + A L+ + +K L SL L S ++T + L+S
Sbjct: 321 RLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKS 364
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 27/264 (10%)
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLK 299
P AA + + L + LN+ + SDD K+ +LK L N +++D L L
Sbjct: 135 PYDAAFFEHVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLA 194
Query: 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS 358
GL LE+ + G+ G L + + + GL L + NLESI+L+
Sbjct: 195 GLNQLEAFSFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLA 254
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
D + +L L+ LK L L ++ T L + ++
Sbjct: 255 HAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKMS-------------------- 294
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
L L++ G G+ IK +++L L L+ +L D L+ ++G+ GL SL +
Sbjct: 295 -----LEYLQLGDGLDAPEGIAAIKGMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLEL 349
Query: 479 SNSRITSAGLRHLKPLKNLRSLTL 502
++ +T L LK +L+ L +
Sbjct: 350 NSVELTDERLPLLKSFSHLKELRI 373
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 122/270 (45%), Gaps = 42/270 (15%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLS-ISSVIFI 211
L K+ESLNI C +D + PL L LK+L+ + + K++D+G+ L GL+ + + F+
Sbjct: 147 LSKIESLNIIATKC-SDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSFV 205
Query: 212 LCSMIIRLFCLHVFLTSLQKLTL----LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 267
M + T+L +++ ++ EG + A +L ++ +L +
Sbjct: 206 GTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESI------SLAHAKCG 259
Query: 268 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 327
D G + K+ LK L LG T LVH+ ++ LE L L EG+ + G+
Sbjct: 260 DAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKMS-LEYLQLGDGLDAPEGIAAIKGMTT 318
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387
L+ L L TN +S+ D L+ +AG+ L+SL L++ ++T
Sbjct: 319 LRRLTL----------------TNAKSLG-------DADLQAVAGIKGLESLELNSVELT 355
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGAAY 417
D L L S + L L RI + Y
Sbjct: 356 DERLPLLKSFSHLKEL-----RIVNRPKGY 380
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 104/234 (44%), Gaps = 8/234 (3%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q S + S+++ + +D + L L++L F ++SD GLE L GL+ L + SF
Sbjct: 146 QLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSF- 204
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDM 173
+ F G L ++ + GL L LES+++ C D+ +
Sbjct: 205 VGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLAHAKC-GDAGV 263
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
L LT LK L++ T + ++ +S+ + +T+L++LT
Sbjct: 264 AQLPKLTKLKGLELGSKNATPGSLVHVAKMSLEYLQLGDGLDAPEGIAAIKGMTTLRRLT 323
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG---CEKFSKIGSLKVLN 284
L N + + A L +++ + L L LN +L+D+ + FS + L+++N
Sbjct: 324 LTNAKS--LGDADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKELRIVN 375
>gi|386336010|ref|YP_006032180.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334198460|gb|AEG71644.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 1053
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 175/417 (41%), Gaps = 44/417 (10%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR-------NNAITAQGM 124
+ L L++ L+SL F+ + I D LR L S RR +A++ G+
Sbjct: 617 AALSRLRNYPALESLSFHGHLSIED-----LRALPP----SVRRLDLSGCTGSAVSEAGL 667
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L L LDL TRI V L L SLN+ N I D+ + L T L
Sbjct: 668 AVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNLS-GNRIGDAGARALGRNTVLT 724
Query: 184 SLQISCSKVTDSGIAYLK---------------GLSISSVIFILCSMIIRLFCLH----- 223
+L +S + + D+G+ L G+ +S+ + + ++R +
Sbjct: 725 ALNVSANPIRDTGVQALADSRSLTSLELRGIGIGIGEASIAALASNTVLRSLDISSNDLS 784
Query: 224 ----VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 279
L Q L L C +T L+ + SL L + + D G ++ S
Sbjct: 785 EQSAAELARNQTLASLKANACGLTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNAS 844
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
L+ LNL N IT + L L+ L SL++ G GD G + L+ L L+L +G
Sbjct: 845 LRTLNLSHNPITLQGLCPLELSRTLTSLDVSGIGCGDRGALLLSKNRVLTSLKLGFNGIG 904
Query: 340 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399
S+G + L+ L S++L I + + LA L SLN+ ++ D +AL
Sbjct: 905 SAGAQRLAANRTLISLDLRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESLT 964
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
LT LD+ R++ A L L SL I + G + + + SLT+L+ N
Sbjct: 965 LTSLDVSVNRLSGRAAQALAGNATLTSLNISHNHIGPDGARALAESPSLTVLDARAN 1021
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 151/353 (42%), Gaps = 8/353 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L +L+ + I D G++ L
Sbjct: 685 IGDREVQALASS-TSLTSLNLSGNRIGDAGARALGRNTVLTALNVS-ANPIRDTGVQALA 742
Query: 104 GLSNLTSLSFRRNN-AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+LTSL R I + A A L LD+ L L SL
Sbjct: 743 DSRSLTSLELRGIGIGIGEASIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKA 802
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLSISSVIFILCSMIIRLFC 221
C +T+ + L+ + +L++L++ + + D+G+ A + S+ ++ + ++ C
Sbjct: 803 NACG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLC 861
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+L L + + GC A L LS L L L + G ++ + +L
Sbjct: 862 PLELSRTLTSLDVSGI-GCGDRGALL--LSKNRVLTSLKLGFNGIGSAGAQRLAANRTLI 918
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L+L N I + L L SLN+ C + D L L L++S ++
Sbjct: 919 SLDLRGNTIDVDAAKALANTGRLTSLNVSDCKLDDAAASALAESLTLTSLDVSVNRLSGR 978
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
+ L+G L S+N+S I R LA SL L+ A I + G AL
Sbjct: 979 AAQALAGNATLTSLNISHNHIGPDGARALAESPSLTVLDARANDIGEAGARAL 1031
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 130/311 (41%), Gaps = 63/311 (20%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYL------KGLSISSVIFILCSMIIRLFCLHVF- 225
+ PL GL +L+ S + V+ I + ++ V + L LH +
Sbjct: 47 LSPLGGLASLRLDAASANTVSAPRILPPAPCHDPRAAALQRVTHLSVHDRRALSELHNYP 106
Query: 226 -LTSLQ---KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
LTSLQ LTL +L+ P T L +L+L+ C GS K
Sbjct: 107 NLTSLQLKGNLTLTDLKALPAT------------LRHLDLSAC------------TGSAK 142
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
+ + +L GL LESLN+ IGD+G L +LK L ++ +G++
Sbjct: 143 ---------SSGAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLKTLNAANGGIGAA 192
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
G R L+ L S++L+ GI D R LAG SL +L + +TD G AL LT
Sbjct: 193 GARALAESPVLTSLDLTQNGIGDEGARALAGSRSLTNLAVLNCLVTDVGAQALAGNRTLT 252
Query: 402 HLDL------------------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 443
LDL IT GA L ++L SL I G D GV+ +
Sbjct: 253 ALDLGNLITETDNELEQAGYDRTANEITAQGAWALAQNRSLTSLSIQGNLCGDGGVQALA 312
Query: 444 DLSSLTLLNLS 454
+LT LN++
Sbjct: 313 RNRTLTSLNVA 323
>gi|290973877|ref|XP_002669673.1| predicted protein [Naegleria gruberi]
gi|284083224|gb|EFC36929.1| predicted protein [Naegleria gruberi]
Length = 230
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLELSDTQV 338
++N+ F+++ + + K +T ++ L L G IGDEG+ ++ + L L + + Q+
Sbjct: 80 IVNVKFSKMLFDSIEKAKFITEMKQLTLLDIGGNQIGDEGIKPISKMKQLTSLYVYNNQI 139
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 398
G +G +++ + L S+ +S I D + ++ + L SLN +I G +++ +
Sbjct: 140 GVAGAKYIGEMKQLTSLTISGNYIGDTGAKFISEMKQLTSLNTCYNEIGVEGAKSISEMK 199
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429
LT L++ G R+ D GA +L K L+SL+I
Sbjct: 200 QLTSLEIGGNRVGDEGAKFLIEMKRLKSLDI 230
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNL---DARQITDTGLAALTSLTGLTHLDLFGARIT 411
+N+ F+ + S+ K ++ +K L L QI D G+ ++ + LT L ++ +I
Sbjct: 81 VNVKFSKMLFDSIEKAKFITEMKQLTLLDIGGNQIGDEGIKPISKMKQLTSLYVYNNQIG 140
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+GA Y+ K L SL I G + D G K I ++ LT LN N + + + IS +
Sbjct: 141 VAGAKYIGEMKQLTSLTISGNYIGDTGAKFISEMKQLTSLNTCYN-EIGVEGAKSISEMK 199
Query: 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L SL + +R+ G + L +K L+SL +
Sbjct: 200 QLTSLEIGGNRVGDEGAKFLIEMKRLKSLDI 230
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%)
Query: 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
+T + L L++ Q+G G++ +S + L S+ + I + + + L SL +
Sbjct: 99 ITEMKQLTLLDIGGNQIGDEGIKPISKMKQLTSLYVYNNQIGVAGAKYIGEMKQLTSLTI 158
Query: 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 441
I DTG ++ + LT L+ I GA + K L SLEI G + D G K
Sbjct: 159 SGNYIGDTGAKFISEMKQLTSLNTCYNEIGVEGAKSISEMKQLTSLEIGGNRVGDEGAKF 218
Query: 442 IKDLSSLTLLNL 453
+ ++ L L++
Sbjct: 219 LIEMKRLKSLDI 230
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
F+T +++LTLL++ G + + +S + L L + Q+ G + ++ L L
Sbjct: 98 FITEMKQLTLLDIGGNQIGDEGIKPISKMKQLTSLYVYNNQIGVAGAKYIGEMKQLTSLT 157
Query: 285 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 344
+ N I D + + L SLN IG EG +++ + L LE+ +VG G +
Sbjct: 158 ISGNYIGDTGAKFISEMKQLTSLNTCYNEIGVEGAKSISEMKQLTSLEIGGNRVGDEGAK 217
Query: 345 HLSGLTNLESINL 357
L + L+S+++
Sbjct: 218 FLIEMKRLKSLDI 230
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
Query: 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
I LF F+ S+ + + + A ++ + L L++ Q+ D+G + SK
Sbjct: 68 IELFMKSQFMNSIVNVKFSKMLFDSIEKAKF--ITEMKQLTLLDIGGNQIGDEGIKPISK 125
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
+ L L + N+I ++ + L SL + IGD G ++ + L L
Sbjct: 126 MKQLTSLYVYNNQIGVAGAKYIGEMKQLTSLTISGNYIGDTGAKFISEMKQLTSLNTCYN 185
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
++G G + +S + L S+ + + D + L + LKSL++
Sbjct: 186 EIGVEGAKSISEMKQLTSLEIGGNRVGDEGAKFLIEMKRLKSLDI 230
>gi|224091068|ref|XP_002309168.1| predicted protein [Populus trichocarpa]
gi|222855144|gb|EEE92691.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 145/527 (27%), Positives = 235/527 (44%), Gaps = 66/527 (12%)
Query: 38 LGQYPGVN-----------DKWMDVIASQ-GSSLLSVDLSGS-DVTDSGLIHLK-DCSNL 83
L +YP VN + + VI++ SL S+DLS S + +GL+ L +C NL
Sbjct: 70 LNRYPNVNHLDLSLCLRLNNSSLTVISNICKDSLNSIDLSRSRSFSYNGLMSLALNCKNL 129
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCT 142
S+D + ++ D + NL L R IT G+ A G L + L+ C
Sbjct: 130 VSIDLSNATELRDAAAAAVAEAKNLERLWLVRCKLITDTGIGCIAVGCKKLRLISLKWCI 189
Query: 143 RIHG---GLVNLK-----------------------GLMKLESLNIKWCNCITDSDMKPL 176
+ GL+ +K L LE + ++ C I D + L
Sbjct: 190 GVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQYLEHIALEGCFGIDDDSLAAL 249
Query: 177 S-GLTNLKSLQI-SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
G +LK+L + SC ++ G++ L + L L L SL L
Sbjct: 250 KHGCKSLKALDMSSCQNISHVGLSSLTSGAEGLQQLTLGYGSPVTLALANSLRSLSILQS 309
Query: 235 LNLEGCPVTAACLDSLSALG----SLFYLNLNRC-QLSDDGCEKF-SKIGSLKVLNLG-F 287
+ L+GCPVT+A L A+G SL L+L++C ++D+G +K LK L++
Sbjct: 310 VKLDGCPVTSA---GLKAIGNWCISLSELSLSKCLGVTDEGLSSLVTKHKDLKKLDITCC 366
Query: 288 NEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLR 344
+ITD + ++ TNL SL ++SC + E V + C L+ L+L+D ++ GL+
Sbjct: 367 RKITDVSIAYITSSCTNLTSLRMESCTLVPSEAFVFIGQQCQFLEELDLTDNEIDDKGLK 426
Query: 345 HLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ---ITDTGLAAL-TSLTG 399
+S + L S+ + ISD L + G+ K +LD + ITD G+ A+ +G
Sbjct: 427 SISKCSKLSSLKIGICLNISDKGLSHI-GMKCSKLADLDLYRSAGITDLGILAICRGCSG 485
Query: 400 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVKHIK-DLSSLTLLNLSQN 456
L +++ + ITDS L L + E G L T +G+ I L L++ +
Sbjct: 486 LEMINMSYCMDITDSSLLALSKCSRLNTFESRGCPLITSSGLAAIAVGCKQLNKLDIKKC 545
Query: 457 CNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
N+ D L+L L + +S S +T GL L + L+S+T+
Sbjct: 546 HNIGDAVMLQLARFSQNLRQITLSYSSVTDVGLLALASISCLQSMTV 592
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 172/406 (42%), Gaps = 72/406 (17%)
Query: 69 VTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKA 126
+ D L LK C +L++LD + C IS GL L G L L+ + +T +
Sbjct: 241 IDDDSLAALKHGCKSLKALDMSSCQNISHVGLSSLTSGAEGLQQLTLGYGSPVTLALANS 300
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPL-SGLTNLKS 184
L L + L+ C GL + + L L++ C +TD + L + +LK
Sbjct: 301 LRSLSILQSVKLDGCPVTSAGLKAIGNWCISLSELSLSKCLGVTDEGLSSLVTKHKDLKK 360
Query: 185 LQISC-SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L I+C K+TD IAY+ +S LT L +E C +
Sbjct: 361 LDITCCRKITDVSIAYIT-------------------------SSCTNLTSLRMESCTLV 395
Query: 244 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 303
+ F +CQ L+ L+L NEI D+ L + +
Sbjct: 396 PS---------EAFVFIGQQCQF-------------LEELDLTDNEIDDKGLKSISKCSK 433
Query: 304 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV-GSSGLRHL------SGLTNLESI 355
L SL + C I D+GL ++ +KC +L+D + S+G+ L G + LE I
Sbjct: 434 LSSLKIGICLNISDKGLSHI----GMKCSKLADLDLYRSAGITDLGILAICRGCSGLEMI 489
Query: 356 NLSF-TGISDGSLRKLAGLSSLKSL-NLDARQITDTGLAAL-TSLTGLTHLDLFGAR-IT 411
N+S+ I+D SL L+ S L + + IT +GLAA+ L LD+ I
Sbjct: 490 NMSYCMDITDSSLLALSKCSRLNTFESRGCPLITSSGLAAIAVGCKQLNKLDIKKCHNIG 549
Query: 412 DSGAAYLRNF-KNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNL 453
D+ L F +NLR + + +TD G + I L S+T+L+L
Sbjct: 550 DAVMLQLARFSQNLRQITLSYSSVTDVGLLALASISCLQSMTVLHL 595
>gi|223698619|gb|ACN18986.1| truncated internalin A [Listeria monocytogenes]
gi|223698691|gb|ACN19034.1| truncated internalin A [Listeria monocytogenes]
gi|223698706|gb|ACN19044.1| truncated internalin A [Listeria monocytogenes]
gi|223698715|gb|ACN19050.1| truncated internalin A [Listeria monocytogenes]
gi|223698781|gb|ACN19094.1| truncated internalin A [Listeria monocytogenes]
gi|223698784|gb|ACN19096.1| truncated internalin A [Listeria monocytogenes]
gi|223698814|gb|ACN19116.1| truncated internalin A [Listeria monocytogenes]
gi|223698838|gb|ACN19132.1| truncated internalin A [Listeria monocytogenes]
gi|223698844|gb|ACN19136.1| truncated internalin A [Listeria monocytogenes]
gi|223698850|gb|ACN19140.1| truncated internalin A [Listeria monocytogenes]
gi|223698856|gb|ACN19144.1| truncated internalin A [Listeria monocytogenes]
gi|223698880|gb|ACN19160.1| truncated internalin A [Listeria monocytogenes]
gi|223698958|gb|ACN19212.1| truncated internalin A [Listeria monocytogenes]
gi|223698967|gb|ACN19218.1| truncated internalin A [Listeria monocytogenes]
gi|223698970|gb|ACN19220.1| truncated internalin A [Listeria monocytogenes]
gi|223698973|gb|ACN19222.1| truncated internalin A [Listeria monocytogenes]
gi|223698982|gb|ACN19228.1| truncated internalin A [Listeria monocytogenes]
Length = 614
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|171911334|ref|ZP_02926804.1| hypothetical protein VspiD_09170 [Verrucomicrobium spinosum DSM
4136]
Length = 301
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 44/281 (15%)
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNL--GFNEITDECLVHLKGLTNLESLN 308
G++ L + C+ G +F IG +LK L L G + + DE L L GL LE++
Sbjct: 43 GAITELTITDCK--KLGPAEFKLIGQVTTLKKLTLYGGCHGLNDETLPSLAGLKELEAIG 100
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
D + D+GL + NLK T G G FTG+ G L+
Sbjct: 101 TDGLKVTDDGLKHFAAFGNLKQASFFHTSFGMPG----------------FTGVGFGHLK 144
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
L+ L + + D G AA+ +++ + + T++G A++ NLRSL+
Sbjct: 145 ---ACPKLERLTVAGISMGDEGFAAIATISQIKDFSTWHTYQTEAGNAHIAKLPNLRSLK 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G G KD + +L+D +L + G+ L L + +R T G+
Sbjct: 202 L---GQRLPG----KD---------RKATSLSDASLPTLVGIKTLEDLKIGEARFTLEGV 245
Query: 489 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL-VSFRP 528
+ LK L +L++L L ++ L+ + LPN+ V+ P
Sbjct: 246 KVLKGLPSLKTLLLYETDFPVTGLEPLK-QALPNVRVTLEP 285
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 226 LTSLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
+T+L+KLTL GC + L SL+ L L + + +++DDG + F+ G+LK +
Sbjct: 67 VTTLKKLTLYG--GCHGLNDETLPSLAGLKELEAIGTDGLKVTDDGLKHFAAFGNLKQAS 124
Query: 285 L-----GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
G T HLK LE L + +GDEG + + +K T
Sbjct: 125 FFHTSFGMPGFTGVGFGHLKACPKLERLTVAGISMGDEGFAAIATISQIKDFSTWHTYQT 184
Query: 340 SSGLRHLSGLTNLESINL---------SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390
+G H++ L NL S+ L T +SD SL L G+ +L+ L + + T G
Sbjct: 185 EAGNAHIAKLPNLRSLKLGQRLPGKDRKATSLSDASLPTLVGIKTLEDLKIGEARFTLEG 244
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLR 425
+ L L L L L+ +G L+ N+R
Sbjct: 245 VKVLKGLPSLKTLLLYETDFPVTGLEPLKQALPNVR 280
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 14/218 (6%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-SISSVIFILCSMIIRLFCLH 223
C+ + D + L+GL L+++ KVTD G+ + ++ F S + F
Sbjct: 79 CHGLNDETLPSLAGLKELEAIGTDGLKVTDDGLKHFAAFGNLKQASFFHTSFGMPGFTGV 138
Query: 224 VF--LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
F L + KL L + G + +++ + + + ++ G +K+ +L+
Sbjct: 139 GFGHLKACPKLERLTVAGISMGDEGFAAIATISQIKDFSTWHTYQTEAGNAHIAKLPNLR 198
Query: 282 VLNLG---------FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
L LG ++D L L G+ LE L + EG+ L GL +LK L
Sbjct: 199 SLKLGQRLPGKDRKATSLSDASLPTLVGIKTLEDLKIGEARFTLEGVKVLKGLPSLKTLL 258
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 370
L +T +GL L L ++ ++ +++ +KL
Sbjct: 259 LYETDFPVTGLEPLK--QALPNVRVTLEPLTEPQRKKL 294
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDG-G 98
G+ND+ + +A L ++ G VTD GL H NL+ F +F + G G
Sbjct: 81 GLNDETLPSLAGL-KELEAIGTDGLKVTDDGLKHFAAFGNLKQASFFHTSFGMPGFTGVG 139
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
HL+ L L+ ++ +G A A + + + G ++ L L
Sbjct: 140 FGHLKACPKLERLTV-AGISMGDEGFAAIATISQIKDFSTWHTYQTEAGNAHIAKLPNLR 198
Query: 159 SLNI--------KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204
SL + + ++D+ + L G+ L+ L+I ++ T G+ LKGL
Sbjct: 199 SLKLGQRLPGKDRKATSLSDASLPTLVGIKTLEDLKIGEARFTLEGVKVLKGLP 252
>gi|148690425|gb|EDL22372.1| insulin-like growth factor binding protein, acid labile subunit,
isoform CRA_b [Mus musculus]
Length = 664
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 180/476 (37%), Gaps = 51/476 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F +L
Sbjct: 156 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFRHTPSLAS 211
Query: 136 LDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 212 LSLGNNLLGRLEEGL--FRGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLT 268
Query: 194 DSGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQK 231
A L GL S+ + +FI + +L+ +T+ ++
Sbjct: 269 YLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKA 328
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 329 LRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIR 388
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+GL LE L L+ I + + GL N+ + LS + S GL
Sbjct: 389 QLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGR 448
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L S++L + + L AGLS L+ L L I+ +L L+ L LDL ++T
Sbjct: 449 LHSLHLEHSCLGRIRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLT 508
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+ L L + LT + L L+LS N L L S L
Sbjct: 509 HLPRQLFQGLGQLEYLLLSNNQLTMLSEDVLGPLQRAFWLDLSHN-RLETPAEGLFSSLG 567
Query: 472 GLVSLNVSNSR----ITSAGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L LN+ N+ + GL L PLK LR L++ V ++
Sbjct: 568 RLRYLNLRNNSLQTFVPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 623
>gi|326436437|gb|EGD82007.1| hypothetical protein PTSG_11905 [Salpingoeca sp. ATCC 50818]
Length = 1127
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 3/285 (1%)
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L + +L+L +++ + + L SL L+L+ ++S F+ + SL L+LG N
Sbjct: 420 LFSVVVLHLNDNRISSVVAHTFADLVSLRELDLSNNRISSIAAFAFAGLTSLVELHLGNN 479
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 348
+ + L++L L+L + I + + L +L L LS+ ++ S SG
Sbjct: 480 TVFEVVADAFADLSSLPKLDLSNNRISNVSALAFADLTSLTELRLSNNRISSIVENAFSG 539
Query: 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408
LT+L ++++ F IS L L+SLNLD + +LT L+HL L
Sbjct: 540 LTSLMTLDVHFNRISTLDENALISTFKLESLNLDHNPVDTFPPRLFVNLTRLSHLRLTST 599
Query: 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468
R T + + LR L + T+ V L+ L L L+ N ++T L +
Sbjct: 600 RATTLPTSLFEHNTRLRELWLFHNRFTEIEVGTFDKLTRLVFLTLTGN-DITHLPSMLFA 658
Query: 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513
LT L L +SN+ + + + L++L +LTL ++ ND+
Sbjct: 659 RLTRLKELYISNNDVRTVDPNAFRGLESLTTLTLVRNRI--NDLH 701
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 116/275 (42%), Gaps = 30/275 (10%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+L+A+ +L +L + QL++ F+ +L L+L N I + L +L L+
Sbjct: 344 TLAAMPNLTHLTWDGNQLAEIEPGVFAATTNLTTLSLRDNRILNVVAGTFAHLNSLRDLD 403
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L I + GL ++ L L+D ++ S + L +L ++LS IS +
Sbjct: 404 LSDNRISSVAVDAFAGLFSVVVLHLNDNRISSVVAHTFADLVSLRELDLSNNRISSIAAF 463
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
AGL+SL L+L + + A L+ L LDL RI++ A
Sbjct: 464 AFAGLTSLVELHLGNNTVFEVVADAFADLSSLPKLDLSNNRISNVSALAF---------- 513
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
DL+SLT L LS N ++ SGLT L++L+V +RI++
Sbjct: 514 --------------ADLTSLTELRLSNN-RISSIVENAFSGLTSLMTLDVHFNRISTLDE 558
Query: 489 RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 523
L + + LES + N + R NL
Sbjct: 559 NAL-----ISTFKLESLNLDHNPVDTFPPRLFVNL 588
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 1/260 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L ++ LT L +G + +A +L L+L ++ + F+ + SL+ L+L
Sbjct: 345 LAAMPNLTHLTWDGNQLAEIEPGVFAATTNLTTLSLRDNRILNVVAGTFAHLNSLRDLDL 404
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N I+ + GL ++ L+L+ I L +L+ L+LS+ ++ S
Sbjct: 405 SDNRISSVAVDAFAGLFSVVVLHLNDNRISSVVAHTFADLVSLRELDLSNNRISSIAAFA 464
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
+GLT+L ++L + + A LSSL L+L +I++ A LT LT L L
Sbjct: 465 FAGLTSLVELHLGNNTVFEVVADAFADLSSLPKLDLSNNRISNVSALAFADLTSLTELRL 524
Query: 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465
RI+ +L +L++ ++ + L LNL N T
Sbjct: 525 SNNRISSIVENAFSGLTSLMTLDVHFNRISTLDENALISTFKLESLNLDHNPVDTFPP-R 583
Query: 466 LISGLTGLVSLNVSNSRITS 485
L LT L L ++++R T+
Sbjct: 584 LFVNLTRLSHLRLTSTRATT 603
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 158/402 (39%), Gaps = 23/402 (5%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
NN I++ AFAGL +LV+L L T + +L L KL+ N N I++
Sbjct: 454 NNRISSIAAFAFAGLTSLVELHLGNNTVFEVVADAFADLSSLPKLDLSN----NRISNVS 509
Query: 173 MKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSL 229
+ LT+L L++S S + ++ + L L V F S + + F
Sbjct: 510 ALAFADLTSLTELRLSNNRISSIVENAFSGLTSLMTLDVHFNRISTLDENALISTF---- 565
Query: 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289
KL LNL+ PV L L +L L + + F L+ L L N
Sbjct: 566 -KLESLNLDHNPVDTFPPRLFVNLTRLSHLRLTSTRATTLPTSLFEHNTRLRELWLFHNR 624
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
T+ + LT L L L I + L LK L +S+ V + GL
Sbjct: 625 FTEIEVGTFDKLTRLVFLTLTGNDITHLPSMLFARLTRLKELYISNNDVRTVDPNAFRGL 684
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409
+L ++ L I+D ++L++++L +T S LT L L G
Sbjct: 685 ESLTTLTLVRNRINDLHADTFTTATALENVDLSDNDLTILDHNLFGSSPRLTELVLSGNH 744
Query: 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469
+T L K LR + D G+ L++L++ N ++ L+
Sbjct: 745 LTQFDHLPLPGLKALRIHDNPLVEQPDTGI--FPSLATLSM----NNHHVPWVNFTLVFV 798
Query: 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 511
L L +L +S S G+ + P+ + + T+ + V +D
Sbjct: 799 LPYLTTLEMSAD--PSFGVARMLPIPEIEARTISATPVNNDD 838
>gi|223698700|gb|ACN19040.1| truncated internalin A [Listeria monocytogenes]
Length = 599
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|356506506|ref|XP_003522022.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 669
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 144/521 (27%), Positives = 219/521 (42%), Gaps = 120/521 (23%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD------- 79
L+ LCL G+ D +D++A + L ++DLS +T+ L HL+D
Sbjct: 182 LRLLCLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGCF 241
Query: 80 ---------------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
C L+ LD + C IS H+ GLS LTS+S I A G
Sbjct: 242 GIDDDSLDVDLLKQGCKTLKRLDISGCQNIS-----HV-GLSKLTSISGGLEKLILADGS 295
Query: 125 KAFAGLIN-LVKLDLERCTRIHGGLVNLKGL-------MKLESLNIKWCNCITDSDMKPL 176
L + L KL + + + G V +GL + L L++ C +TD + L
Sbjct: 296 PVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFL 355
Query: 177 -SGLTNLKSLQISC-SKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
S +L+ L I+C K+TD IA + S LT
Sbjct: 356 VSKHKDLRKLDITCCRKITDVSIASIA-------------------------NSCTGLTS 390
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L +E C + + F L +C L+ L+L NEI DE
Sbjct: 391 LKMESCTLVPS---------EAFVLIGQKCHY-------------LEELDLTDNEIDDEG 428
Query: 295 LVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-LKCLEL-SDTQVGSSGLRHLSG-LT 350
L+ + + L SL + C I D GL + C+ LK L+L T V G+ ++G
Sbjct: 429 LMSISSCSWLTSLKIGICLNITDRGLAYVGMRCSKLKELDLYRSTGVDDLGISAIAGGCP 488
Query: 351 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFG 407
LE IN S+ T I+D +L L+ S+L++L + +T GLAA+ + L+ LD+
Sbjct: 489 GLEMINTSYCTSITDRALIALSKCSNLETLEIRGCLLVTSIGLAAIAMNCRQLSRLDIKK 548
Query: 408 AR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLS---SLTLLNLSQNCNLTDK 462
I DSG L +F +NLR + + +TD G+ + ++S S TLL+L
Sbjct: 549 CYNIDDSGMIALAHFSQNLRQINLSYSSVTDVGLLSLANISCLQSFTLLHLQ-------- 600
Query: 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 503
GLV ++ + + GL +K +LRSL E
Sbjct: 601 ---------GLVPGGLAAALLACGGLTKVKLHLSLRSLLPE 632
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 110/436 (25%), Positives = 169/436 (38%), Gaps = 103/436 (23%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAF-AGLINLVKLD 137
N+ LD + C ++ DG L + G + L + R+ TA G+ + A +LV+LD
Sbjct: 76 PNVTELDLSLCPRVGDGALGLVAGAYAATLRRMDLSRSRRFTATGLLSLGARCEHLVELD 135
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
L T + D+ + ++ NL+ L ++ C VTD G
Sbjct: 136 LSNATELR------------------------DAGVAAVARARNLRKLWLARCKMVTDMG 171
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLH---------VFLTSLQ--KLTLLNLEGCPVTAA 245
I I + C + RL CL V L +++ +LT L+L P+T
Sbjct: 172 IG---------CIAVGCRKL-RLLCLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEK 221
Query: 246 CLDSLSALGSLFYLNLNRC---------------------QLSDDGCEKFSKIGSLKVLN 284
CL S+ L L L L C +L GC+ S +G K+ +
Sbjct: 222 CLPSIFKLQHLEDLVLEGCFGIDDDSLDVDLLKQGCKTLKRLDISGCQNISHVGLSKLTS 281
Query: 285 LGF----------NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 334
+ + +T L L+ L+S+ LD C + EGL + LC + ELS
Sbjct: 282 ISGGLEKLILADGSPVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLC-ISLRELS 340
Query: 335 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394
LS + LSF LRKL R+ITD +A++
Sbjct: 341 -----------LSKCLGVTDEALSFLVSKHKDLRKLDITC--------CRKITDVSIASI 381
Query: 395 T-SLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451
S TGLT L + + S A L + L L++ + D G+ I S LT L
Sbjct: 382 ANSCTGLTSLKMESCTLVPSEAFVLIGQKCHYLEELDLTDNEIDDEGLMSISSCSWLTSL 441
Query: 452 NLSQNCNLTDKTLELI 467
+ N+TD+ L +
Sbjct: 442 KIGICLNITDRGLAYV 457
>gi|301088808|ref|XP_002894796.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108394|gb|EEY66446.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 825
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 129/476 (27%), Positives = 204/476 (42%), Gaps = 82/476 (17%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSS-----LLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
Q++ L + V+++W+ IAS ++ ++ L+G+ +TDSG++HL +L SLD
Sbjct: 34 QEVDLRNFTCVSNEWLFAIASHPAASGSGTFRTLILAGTSITDSGIVHLSKLKSLTSLDV 93
Query: 89 NFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
+ C ++D GL + R LS+L +L ++ A L N+ K C R+H
Sbjct: 94 SGCHALTDAGLNTIRRQLSSLQTLHLDECYHFSS------AVLCNVWK----DCKRLH-- 141
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPL-----SGLTNLKSLQI-SCSKVTDSGIAYLK 201
SL+I+ C +TD+ ++ L S NL+SL C +T SGI+YL
Sbjct: 142 -----------SLSIRGCPGVTDAFLQCLATTKRSSEANLRSLDARQCKHLTSSGISYLA 190
Query: 202 GLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP---------VTAACLD--SL 250
S+ M I + L + + E P ++ C+D ++
Sbjct: 191 NSSLK-------DMKINYLAVDDCL-GVDNVAFFGFETSPGLRSLSSLSLSGLCVDETAI 242
Query: 251 SAL-----GSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTN 303
S + SL LN+ RC+ LSD + I S + + L E L+ G+ N
Sbjct: 243 SWIVKGCGASLQCLNVARCKVLSDFALLLMAPLISSPRFIKLNLQECP---LITNTGIKN 299
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQ---VGSSGLRHLSGLTNLESINLS- 358
L SL + DE L NLK CL + D +G G NL +NL
Sbjct: 300 LFSLEEEKNQDDDEILPTSLAFLNLKNCLNIGDDAMVLIGKYG-------GNLIKLNLKG 352
Query: 359 FTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAA 416
+SD + +LA G LK ++L R IT L L L LD+ R +S A
Sbjct: 353 LRKVSDRGIMELAKGCPLLKKMSLSGRNITVQTFKLLGKLCRKLQVLDISRRRDLESPAC 412
Query: 417 YLR---NFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELIS 468
+L L +++ + DAGV + L +NLS+ +TD E ++
Sbjct: 413 FLHLVSRVHPLLRIDLSATNVCDAGVTLLASACRQLENINLSKCAQITDFAAEALA 468
>gi|22347568|gb|AAM95929.1| internalin A precursor [Listeria monocytogenes]
Length = 743
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +K++D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKLSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 88
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|219821381|gb|ACL37832.1| internalin A [Listeria monocytogenes]
gi|219821384|gb|ACL37834.1| internalin A [Listeria monocytogenes]
Length = 741
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +K++D ++ L KLT N
Sbjct: 146 ANLTTLERLDISSNKLSD-------------------------------ISVLAKLT--N 172
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 173 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 229
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 230 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 284
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 285 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 342
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 343 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 401
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 34 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 86
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 87 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 141
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 142 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 199
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 200 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 250
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 251 -NISPLAGLTALT 262
>gi|443688071|gb|ELT90873.1| hypothetical protein CAPTEDRAFT_165456 [Capitella teleta]
Length = 642
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 206/441 (46%), Gaps = 53/441 (12%)
Query: 18 RC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
RC +T ++ + R+C LQDL L + P ++D + ++ ++ +++S S +TD+ L
Sbjct: 171 RCERITSLTFYSIRECRNLQDLNLSECPALDDDSLKMVLEGCKIIIYLNISHSLITDASL 230
Query: 75 IHL-KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAG- 129
+ K C NLQ L FC++ SD GL++L L L + +T G+ +
Sbjct: 231 RSISKYCLNLQYLSLAFCLRYSDKGLQYLANGESAKRLNHLDISGCSQVTPNGLAKLSEG 290
Query: 130 -------LINLVKLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
L+N ++ + C I NL+ + L S N ++D+ +K ++
Sbjct: 291 CSDVQTLLLNDIESFDDACLEAITDNCKNLRNISFLGSHN------LSDNALKNVATSKK 344
Query: 182 LKSLQI-SCSKVTDSGIAYLKG--LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L+ L+I S K+TD Y+ + + + C I L L V L+ + LT++NL
Sbjct: 345 LQMLKIDSNCKITDITFKYIGKSCHELRHLYLVDCHRITDL-TLKV-LSQCRNLTVVNLA 402
Query: 239 GCP----------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSK-IGSLKVLNLG 286
C V ++C + L LNL C ++ D K +L L+L
Sbjct: 403 DCVRITDTGVRYLVESSCGNKLQE------LNLTNCIRVGDIALVNIHKRCHNLTYLHLC 456
Query: 287 FNEITDECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLR 344
F E E + L G T+ L +L++ C GD GL +L LK + LS+ + + GL+
Sbjct: 457 FCEHISEAGIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECSAITDLGLQ 516
Query: 345 HLS-GLTNLESINLSFTG-ISDGSLRKLAGLSS-LKSLNLDA-RQITDTGLAALTSLTG- 399
+ T +E ++LS I+DG+++ LA L L+L + +TD + L+ +
Sbjct: 517 KFAQQCTEIERLDLSHCQMITDGAIKNLAFCCRMLTHLSLAGCKLLTDLSVQYLSGVCHY 576
Query: 400 LTHLDLFGA-RITDSGAAYLR 419
L +LD+ G+ ITD YL+
Sbjct: 577 LLYLDISGSLHITDKSMKYLK 597
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 182/404 (45%), Gaps = 35/404 (8%)
Query: 133 LVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK-PLSGLTNLKSLQISCS 190
LV L+L RC RI +++ L+ LN+ C + D +K L G + L IS S
Sbjct: 164 LVHLNLRRCERITSLTFYSIRECRNLQDLNLSECPALDDDSLKMVLEGCKIIIYLNISHS 223
Query: 191 KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ---------KLTLLNLEGC- 240
+TD+ + SIS L + + FCL LQ +L L++ GC
Sbjct: 224 LITDASLR-----SISKYCLNLQYLSL-AFCLRYSDKGLQYLANGESAKRLNHLDISGCS 277
Query: 241 PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF---NEITDECLV 296
VT L LS + L LN + DD C + + N+ F + ++D L
Sbjct: 278 QVTPNGLAKLSEGCSDVQTLLLNDIESFDDACLEAITDNCKNLRNISFLGSHNLSDNALK 337
Query: 297 HLKGLTNLESLNLDS-CGIGDEGLVNLTGLCN-LKCLELSD-TQVGSSGLRHLSGLTNLE 353
++ L+ L +DS C I D + C+ L+ L L D ++ L+ LS NL
Sbjct: 338 NVATSKKLQMLKIDSNCKITDITFKYIGKSCHELRHLYLVDCHRITDLTLKVLSQCRNLT 397
Query: 354 SINLS-FTGISDGSLRKLAGLS---SLKSLNL-DARQITDTGLAAL-TSLTGLTHLDL-F 406
+NL+ I+D +R L S L+ LNL + ++ D L + LT+L L F
Sbjct: 398 VVNLADCVRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRCHNLTYLHLCF 457
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE- 465
I+++G L +L +L+I G DAG+ + + L +NLS+ +TD L+
Sbjct: 458 CEHISEAGIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECSAITDLGLQK 517
Query: 466 LISGLTGLVSLNVSNSR-ITSAGLRHLK-PLKNLRSLTLESCKV 507
T + L++S+ + IT +++L + L L+L CK+
Sbjct: 518 FAQQCTEIERLDLSHCQMITDGAIKNLAFCCRMLTHLSLAGCKL 561
>gi|71896592|ref|NP_445781.2| insulin-like growth factor-binding protein complex acid labile
subunit precursor [Rattus norvegicus]
gi|543801|sp|P35859.1|ALS_RAT RecName: Full=Insulin-like growth factor-binding protein complex
acid labile subunit; Short=ALS; Flags: Precursor
gi|5705934|gb|AAB23770.2| insulin-like growth factor binding protein complex acid-labile
subunit [Rattus sp.]
Length = 603
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 184/475 (38%), Gaps = 49/475 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAIT-AQGMKAFAGLINLV 134
NL SLDF + + L L GL NL L RN A G+ + +
Sbjct: 95 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYYLHLERNRLRNLAVGLFTHTPSLASL 151
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 152 SLSSNLLGRLEEGL--FQGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLTY 208
Query: 195 SGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQKL 232
A GL S+ + +F+ + +L+ +T+ ++ L
Sbjct: 209 LQPALFCGLGELRELDLSRNALRSVKANVFVHLPRLQKLYLDRNLITAVAPGAFLGMKAL 268
Query: 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 269 RWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIRQ 328
Query: 293 ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
+GL LE L L+ I + + +GL N+ + LS + S R GL L
Sbjct: 329 LGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKL 388
Query: 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412
S++L + + L AGLS L+ L L I+ +L L+ L LDL R+T
Sbjct: 389 HSLHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTH 448
Query: 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472
+ +L L + LT + + L L++S N +L L S L
Sbjct: 449 LPRQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHN-HLETLAEGLFSSLGR 507
Query: 473 LVSLNVSNSRITS----AGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
+ L++ N+ + + GL L PLK LR L++ V ++
Sbjct: 508 VRYLSLRNNSLQTFSPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562
>gi|148607496|gb|ABQ95524.1| InlA [Listeria monocytogenes]
Length = 730
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298360550|gb|ADI77854.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 366 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 486 AGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|308044417|ref|NP_001183765.1| hypothetical protein [Zea mays]
gi|238014428|gb|ACR38249.1| unknown [Zea mays]
gi|413949466|gb|AFW82115.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
Length = 547
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 165/367 (44%), Gaps = 36/367 (9%)
Query: 56 GSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G S+ VDLSG V L +L L+ L C I++ + L G
Sbjct: 71 GRSVEEVDLSGFLSVNSEWLAYLGSFRYLRVLKLADCKNINNDAVWSLSG---------- 120
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T + +++ L L LD+ + G LK +L SLN+ + +
Sbjct: 121 -GILMTDKTLQSLQVLTKLEHLDIWGSETTNEGASALKSFARLLSLNLALTR-VNHLSIP 178
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAY-LKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
P + N+ + +I DS + L+ +S+ F I ++F +S+Q +
Sbjct: 179 PTTSYLNMSNCEIHSICDVDSEVPVPLENFIVSAATF---GNIDKVF------SSIQASS 229
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFNEITD 292
L++L+ + L L + +L +L+L+ ++D E +KIG+ L+ L+L IT
Sbjct: 230 LIHLDLSSCKLSNLSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTGITS 289
Query: 293 ECLVHLKG-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT--------QVGSSGL 343
+ L L G + NL SL+L + I D L + + L+ ++LS T +V S L
Sbjct: 290 QALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNSEKL 349
Query: 344 RHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
+S L LES+NL T +S + LA ++LK L L + ++D L AL++ + L
Sbjct: 350 LSMSAFEHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAASNL 409
Query: 401 THLDLFG 407
HL G
Sbjct: 410 IHLGFRG 416
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 113/273 (41%), Gaps = 68/273 (24%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSF 113
Q SSL+ +DLS + S L L+ NL+ LD ++ I I+DG +EH+ + +NL LS
Sbjct: 226 QASSLIHLDLSSCKL--SNLSFLEKMKNLEHLDLSYNI-ITDGAIEHIAKIGTNLQYLSL 282
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ N IT+Q + AG +
Sbjct: 283 K-NTGITSQALCILAGTV------------------------------------------ 299
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI---------FILCSM-IIRLFCLH 223
NL SL ++ +K+ DS +AY+ + + I FI + +L +
Sbjct: 300 ------PNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNSEKLLSMS 353
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
F L+ L LNLE P++A + L++ +L YL L LSD S +L +
Sbjct: 354 AF-EHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSDFLSDPALHALSAASNL--I 410
Query: 284 NLGF--NEITDECLVHLKGLTNLESLNLDSCGI 314
+LGF N ++ L+ L L+L C I
Sbjct: 411 HLGFRGNILSSFGLLQFVPPVTLCVLDLSGCWI 443
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 115/246 (46%), Gaps = 21/246 (8%)
Query: 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 349
+TD+ L L+ LT LE L++ +EG L L L L+ T+V HLS
Sbjct: 124 MTDKTLQSLQVLTKLEHLDIWGSETTNEGASALKSFARLLSLNLALTRVN-----HLSIP 178
Query: 350 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL------TGLTHL 403
+N+S + + + + S + L+ ++ + + + L HL
Sbjct: 179 PTTSYLNMS-----NCEIHSICDVDSEVPVPLENFIVSAATFGNIDKVFSSIQASSLIHL 233
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDK 462
DL ++ S ++L KNL L++ +TD ++HI + ++L L+L +N +T +
Sbjct: 234 DLSSCKL--SNLSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSL-KNTGITSQ 290
Query: 463 TLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 521
L +++G + L SL+++N++I + L ++ + LR++ L + + S L
Sbjct: 291 ALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQTSIKGFIHTEVNSEKLL 350
Query: 522 NLVSFR 527
++ +F
Sbjct: 351 SMSAFE 356
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-------ITDTGLAALTSLT 398
LSG ++ S L++ G S LR L L+ K++N DA +TD L +L LT
Sbjct: 79 LSGFLSVNSEWLAYLG-SFRYLRVLK-LADCKNINNDAVWSLSGGILMTDKTLQSLQVLT 136
Query: 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L HLD++G+ T+ GA+ L++F L SL + LT V H+ + + LN+S NC
Sbjct: 137 KLEHLDIWGSETTNEGASALKSFARLLSLNL---ALTR--VNHLSIPPTTSYLNMS-NCE 190
Query: 459 L 459
+
Sbjct: 191 I 191
>gi|157111144|ref|XP_001651407.1| leucine-rich transmembrane proteins [Aedes aegypti]
gi|108878510|gb|EAT42735.1| AAEL005762-PA [Aedes aegypti]
Length = 596
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 152/370 (41%), Gaps = 34/370 (9%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
DL ++TDS L +L+D + L GL NL L+F RNN T +
Sbjct: 85 DLHTLEITDSRLNNLQDFA--------------------LNGLRNLEVLNFSRNNLTTIK 124
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLT 180
L NL LDL R + K L LN+ I +S K +
Sbjct: 125 SWSD-HDLENLQTLDLRRNLVKGINSQSFKRYPNLNKLNLAGNLIEVIPESTFK---VVP 180
Query: 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI--IRLFCLHVFLTSLQKLTLLNLE 238
NLK L + + +T LKGL+ + F + I + F F+ + L L L+
Sbjct: 181 NLKYLNLGRNLLTSIEETTLKGLNKLTHAFFHHNQISFVDFFA---FIGN-SHLKTLQLQ 236
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298
G +T D LS L L +LN++ QL D F K L+VL+L +N I
Sbjct: 237 GNQITIFETDLLSNLPRLTFLNISYNQLEDIADHTFKKNADLRVLDLSYNRIEKFREDGF 296
Query: 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358
KGL +LE N + +++ L+LS ++ + LE +NLS
Sbjct: 297 KGLVSLEVFNASHNHLTQLNKYIFKDFSSVRILDLSGNRLTYIDNKLFEYSPRLEMLNLS 356
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
IS+ L +L+L Q+++ A L + L+HL++ + A+ L
Sbjct: 357 RNSISEIEPNIFEDSRKLLTLDLSHNQLSED--AFLWPIVSLSHLNMSYNQFQRLNASVL 414
Query: 419 RNFKNLRSLE 428
+F +R L+
Sbjct: 415 ESFAQVRLLK 424
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 19/278 (6%)
Query: 258 YLNLNRCQLSDDGCE-----KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
Y NLN+ L+ + E F + +LK LNLG N +T LKGL L
Sbjct: 155 YPNLNKLNLAGNLIEVIPESTFKVVPNLKYLNLGRNLLTSIEETTLKGLNKLTHAFFHHN 214
Query: 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 372
I G +LK L+L Q+ LS L L +N+S+ + D +
Sbjct: 215 QISFVDFFAFIGNSHLKTLQLQGNQITIFETDLLSNLPRLTFLNISYNQLEDIADHTFKK 274
Query: 373 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA---RITDSGAAYLRNFKNLRSLEI 429
+ L+ L+L +I GL L++F A +T ++F ++R L++
Sbjct: 275 NADLRVLDLSYNRIEKFREDGFK---GLVSLEVFNASHNHLTQLNKYIFKDFSSVRILDL 331
Query: 430 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489
G LT K + L +LNLS+N +++ + L++L++S+++++
Sbjct: 332 SGNRLTYIDNKLFEYSPRLEMLNLSRNS-ISEIEPNIFEDSRKLLTLDLSHNQLSEDAF- 389
Query: 490 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527
L P+ ++L ++ N +RL + L + R
Sbjct: 390 -LWPI-----VSLSHLNMSYNQFQRLNASVLESFAQVR 421
>gi|29423725|gb|AAO73556.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +K++D ++ L KLT N
Sbjct: 147 ANLTTLERLDISSNKLSD-------------------------------ISVLAKLT--N 173
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 174 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 230
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 231 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 285
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 286 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 343
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 344 LANLTRITQLGLNDQAWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 402
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 35 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNL 87
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 142
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 143 --LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 200
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 251
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 252 -NISPLAGLTALT 263
>gi|386052707|ref|YP_005970265.1| internalin A [Listeria monocytogenes Finland 1998]
gi|130774801|gb|ABO32414.1| InlA [Listeria monocytogenes]
gi|130774805|gb|ABO32415.1| InlA [Listeria monocytogenes]
gi|130774807|gb|ABO32416.1| InlA [Listeria monocytogenes]
gi|150371724|dbj|BAF65677.1| internalin A [Listeria monocytogenes]
gi|150371780|dbj|BAF65679.1| internalin A [Listeria monocytogenes]
gi|150371784|dbj|BAF65681.1| internalin A [Listeria monocytogenes]
gi|150371788|dbj|BAF65683.1| internalin A [Listeria monocytogenes]
gi|150371790|dbj|BAF65684.1| internalin A [Listeria monocytogenes]
gi|150371792|dbj|BAF65685.1| internalin A [Listeria monocytogenes]
gi|150371798|dbj|BAF65688.1| internalin A [Listeria monocytogenes]
gi|150371802|dbj|BAF65690.1| internalin A [Listeria monocytogenes]
gi|150371808|dbj|BAF65693.1| internalin A [Listeria monocytogenes]
gi|150371814|dbj|BAF65696.1| internalin A [Listeria monocytogenes]
gi|150371818|dbj|BAF65698.1| internalin A [Listeria monocytogenes]
gi|150371824|dbj|BAF65701.1| internalin A [Listeria monocytogenes]
gi|150371830|dbj|BAF65704.1| internalin A [Listeria monocytogenes]
gi|150371832|dbj|BAF65705.1| internalin A [Listeria monocytogenes]
gi|150371834|dbj|BAF65706.1| internalin A [Listeria monocytogenes]
gi|150371836|dbj|BAF65707.1| internalin A [Listeria monocytogenes]
gi|150371838|dbj|BAF65708.1| internalin A [Listeria monocytogenes]
gi|150371844|dbj|BAF65711.1| internalin A [Listeria monocytogenes]
gi|150371848|dbj|BAF65713.1| internalin A [Listeria monocytogenes]
gi|150371850|dbj|BAF65714.1| internalin A [Listeria monocytogenes]
gi|150371854|dbj|BAF65716.1| internalin A [Listeria monocytogenes]
gi|150371864|dbj|BAF65721.1| internalin A [Listeria monocytogenes]
gi|150371870|dbj|BAF65724.1| internalin A [Listeria monocytogenes]
gi|290350828|dbj|BAI78335.1| internalin A [Listeria monocytogenes]
gi|290350832|dbj|BAI78337.1| internalin A [Listeria monocytogenes]
gi|290350834|dbj|BAI78338.1| internalin A [Listeria monocytogenes]
gi|290350840|dbj|BAI78341.1| internalin A [Listeria monocytogenes]
gi|298359802|gb|ADI77480.1| internalin A [Listeria monocytogenes]
gi|298359828|gb|ADI77493.1| internalin A [Listeria monocytogenes]
gi|298359876|gb|ADI77517.1| internalin A [Listeria monocytogenes]
gi|298359878|gb|ADI77518.1| internalin A [Listeria monocytogenes]
gi|298359918|gb|ADI77538.1| internalin A [Listeria monocytogenes]
gi|298359964|gb|ADI77561.1| internalin A [Listeria monocytogenes]
gi|298359966|gb|ADI77562.1| internalin A [Listeria monocytogenes]
gi|298360014|gb|ADI77586.1| internalin A [Listeria monocytogenes]
gi|298360038|gb|ADI77598.1| internalin A [Listeria monocytogenes]
gi|298360084|gb|ADI77621.1| internalin A [Listeria monocytogenes]
gi|298360104|gb|ADI77631.1| internalin A [Listeria monocytogenes]
gi|298360134|gb|ADI77646.1| internalin A [Listeria monocytogenes]
gi|298360170|gb|ADI77664.1| internalin A [Listeria monocytogenes]
gi|298360178|gb|ADI77668.1| internalin A [Listeria monocytogenes]
gi|298360214|gb|ADI77686.1| internalin A [Listeria monocytogenes]
gi|298360242|gb|ADI77700.1| internalin A [Listeria monocytogenes]
gi|298360244|gb|ADI77701.1| internalin A [Listeria monocytogenes]
gi|298360254|gb|ADI77706.1| internalin A [Listeria monocytogenes]
gi|298360278|gb|ADI77718.1| internalin A [Listeria monocytogenes]
gi|298360310|gb|ADI77734.1| internalin A [Listeria monocytogenes]
gi|298360334|gb|ADI77746.1| internalin A [Listeria monocytogenes]
gi|298360338|gb|ADI77748.1| internalin A [Listeria monocytogenes]
gi|298360376|gb|ADI77767.1| internalin A [Listeria monocytogenes]
gi|298360384|gb|ADI77771.1| internalin A [Listeria monocytogenes]
gi|298360436|gb|ADI77797.1| internalin A [Listeria monocytogenes]
gi|298360532|gb|ADI77845.1| internalin A [Listeria monocytogenes]
gi|298360542|gb|ADI77850.1| internalin A [Listeria monocytogenes]
gi|298360552|gb|ADI77855.1| internalin A [Listeria monocytogenes]
gi|298360564|gb|ADI77861.1| internalin A [Listeria monocytogenes]
gi|298360568|gb|ADI77863.1| internalin A [Listeria monocytogenes]
gi|298360596|gb|ADI77877.1| internalin A [Listeria monocytogenes]
gi|298360666|gb|ADI77912.1| internalin A [Listeria monocytogenes]
gi|298360710|gb|ADI77934.1| internalin A [Listeria monocytogenes]
gi|346645358|gb|AEO37983.1| internalin A [Listeria monocytogenes Finland 1998]
gi|443428778|gb|AGC92188.1| internalin A [Listeria monocytogenes]
gi|443428804|gb|AGC92201.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|425701584|gb|AFX92746.1| putative F-box/LRR-repeat protein [Megavirus courdo11]
Length = 559
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 115/471 (24%), Positives = 201/471 (42%), Gaps = 110/471 (23%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
N+ S++ R N IT + ++ G+ K++L C I G K L E++N+ C
Sbjct: 65 QNIKSINLSRTN-ITDKELQFLCGI---TKINLSCCKNITGS--GFKYLQLAENINLSGC 118
Query: 166 NCITDSDMKPLSGL-----------------------------------TNLKSLQISCS 190
N I S+++ LS + T +K + +S +
Sbjct: 119 NQIIGSELRYLSNIVKINLSRTNIDDQAIEYLIFGQKIDGNKEILIQPQTKIKFIDLSFT 178
Query: 191 KVTDSGIAYL---KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL 247
K+T+ I+YL K ++I+S F+ S CL L +T + + V
Sbjct: 179 KITNCSISYLSNVKIININSCEFVTSS------CLQY----LHNITHIYMNTYNVIIG-- 226
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL--- 304
D++ L + L LN LSD+ E I L++ N ++IT + L LK L L
Sbjct: 227 DNIKYLNKIKLLVLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLKILSLR 285
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGIS 363
S N+D+ + + L N C +++D+ L L +LE+INLS+ I+
Sbjct: 286 HSYNIDTISFIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSWCYKIT 335
Query: 364 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 422
D L+ L ++ ++NL +ITD GL L+ + + +ITD G +LRN K
Sbjct: 336 DNGLKNLQHVT---NINLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKHLRNVK 390
Query: 423 N--------------------------LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
N ++ ++ +TD G+ ++ + SL+LL
Sbjct: 391 NIKLGYHSTSDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLLYCE-- 448
Query: 457 CNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
N+TD L+ +S + S++++N +I GL++L + + + CK
Sbjct: 449 -NITDDGLQYLSKIK---SISINNCPKIIGTGLKYLSDCQKINLSNVRLCK 495
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 127/282 (45%), Gaps = 53/282 (18%)
Query: 30 DCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSG-SDVTDSGLIHLKDCSNLQ 84
D +LQ L +N W I G + +++LSG +TD+GL++L S
Sbjct: 314 DSSLQ--YLPHLETINLSWCYKITDNGLKNLQHVTNINLSGCHRITDNGLVYL---SKAD 368
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTR 143
S++ ++CI+I+D GL+HLR + N+ L + + I ++ F + K E + T+
Sbjct: 369 SINISYCIKITDDGLKHLRNVKNI-KLGYHSTSDIYM--IEYFEYDFSKEKYIKEIKNTK 425
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKG 202
+ L L+ +SL++ +C ITD ++ LS +KS+ I +C K+ +G+ Y
Sbjct: 426 QLITDIGLSYLINTQSLSLLYCENITDDGLQYLSK---IKSISINNCPKIIGTGLKY--- 479
Query: 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
L+ QK+ L N+ C + L S + +N N
Sbjct: 480 -----------------------LSDCQKINLSNVRLCKSSLKYLSLFSKIK----INNN 512
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
+DD + S+ +K+ GFN+IT L HL + L
Sbjct: 513 ---FTDDDLKYLSRAKKIKL--SGFNKITKNGLKHLYQVDKL 549
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 164/354 (46%), Gaps = 64/354 (18%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ ++D+ L ++++ +L+ +N +I+ GL+ L+ NL LS R + I
Sbjct: 240 LNDHTLSDNQLEYIQNIEHLEI--YNTSDKITHQGLQKLK---NLKILSLRHSYNIDTI- 293
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+F + LDL+ C ++ +L+ L LE++N+ WC ITD+ +K L +TN+
Sbjct: 294 --SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLETINLSWCYKITDNGLKNLQHVTNIN 349
Query: 184 SLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV 242
C ++TD+G+ YL K SI+ +C+ + L+ L N++ +
Sbjct: 350 LS--GCHRITDNGLVYLSKADSINIS-----------YCIKITDDGLKHLR--NVKNIKL 394
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGL 301
+ + Y D EK+ K I + K L ITD + L L
Sbjct: 395 GYHSTSDIYMIEYFEY---------DFSKEKYIKEIKNTKQL------ITD---IGLSYL 436
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 359
N +SL+L C I D+GL L+ +K + +++ ++ +GL++LS + + INLS
Sbjct: 437 INTQSLSLLYCENITDDGLQYLSK---IKSISINNCPKIIGTGLKYLS---DCQKINLSN 490
Query: 360 TGISDGSLRKLAGLSSLKSLN----------LDARQITDTGLAALTSLTGLTHL 403
+ SL+ L+ S +K N A++I +G +T GL HL
Sbjct: 491 VRLCKSSLKYLSLFSKIKINNNFTDDDLKYLSRAKKIKLSGFNKITK-NGLKHL 543
>gi|371942138|gb|AEX60881.1| internaline [Listeria monocytogenes]
Length = 789
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNAPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|340057619|emb|CCC51965.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 872
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 118/465 (25%), Positives = 199/465 (42%), Gaps = 75/465 (16%)
Query: 33 LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
L+ L L V+D +W+ + +SL ++DLS + V + L L+ CS+L+ L +C
Sbjct: 397 LEHLKLAYCRSVSDVRWVRAL----TSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYC 452
Query: 92 IQISD----------------------GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ D GL + LT+LS R + G+K
Sbjct: 453 KDVVDISFVVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSLRECRQVA--GLKFVGA 510
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L+ L+ E + G + ++ KLE L+ + NC +D++ L L LK+L ++
Sbjct: 511 LKQLINLNAEGTGMLDGNIDHITCCQKLEVLSFR--NCPFLTDVRCLKDLGGLKALDLAG 568
Query: 190 SKVTDSGIAYLKG-LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD 248
+ VTD G++ L S+ S+ C +I FL L KL V A ++
Sbjct: 569 AYVTDEGVSTLSHCTSLESIDVSGCCLITHFG----FLIGLTKLR-------NVVANGMN 617
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK-------------VLNLGFNEITDECL 295
++ G L ++ R L + + S +G + + N+G N +
Sbjct: 618 VVNVDGLLKSPSMERVSLVES--RRLSFVGHVAAARLTELSVENSNISNVGINAV----- 670
Query: 296 VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L+G +L+ L+L C I D L ++ L L+ L L T V + ++ NL
Sbjct: 671 --LEGCYSLQRLSLQQCPAISD--LQGVSLLPKLQELLLRSTAVSRESVAQIAACENLRR 726
Query: 355 INLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413
+ +S ++D ++ L L SL L+L +T G+ L + L L+L R +
Sbjct: 727 LQISDCADVTDVNI--LCSLQSLVDLDLSKTNVTTGGVKGLAQCSALKKLNLSDCRFV-T 783
Query: 414 GAAYLRNFKNLRSLEICGGGLTD---AGVKHIKDLSSLTLLNLSQ 455
L LR L +C +TD AG++H + L +LTL S+
Sbjct: 784 NINCLGKLPVLRELYLCRTSVTDRGIAGLQHCRQLETLTLTKCSR 828
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 166/371 (44%), Gaps = 75/371 (20%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL+ ++ C++LQ L + C+++ + L L L +L+ RN + ++G K
Sbjct: 289 ITDEGLLPVRKCTSLQHLTLDNCVRLR--SINCLGSLHRLHTLTVSRNR-MPSEGFK--- 342
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL NL+G LE L N I ++ ++G+ L+ L ++
Sbjct: 343 ------------------GLANLRG---LEVLRFAVLNRIL--TLESIAGIQCLRELDLT 379
Query: 189 CSKVTDSGIAYLKGLSISSVIFILCSMIIRL---FCLHV----FLTSLQKLTLLNLEGCP 241
+ +TD G A+L CS + L +C V ++ +L L L+L
Sbjct: 380 DNWLTDEGCAFLAH----------CSQLEHLKLAYCRSVSDVRWVRALTSLQTLDLSYTS 429
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
V LDSL + SL L+L C+ V+++ F + GL
Sbjct: 430 VLNCFLDSLRSCSSLEELSLAYCK---------------DVVDISF----------VVGL 464
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
L+SL++ + + GL ++ L L L + + +GL+ + L L ++N TG
Sbjct: 465 NCLKSLDVSGTCVDESGLSSVGKCPALTNLSLRECR-QVAGLKFVGALKQLINLNAEGTG 523
Query: 362 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
+ DG++ + L+ L+ + +TD + L L GL LDL GA +TD G + L +
Sbjct: 524 MLDGNIDHITCCQKLEVLSFRNCPFLTD--VRCLKDLGGLKALDLAGAYVTDEGVSTLSH 581
Query: 421 FKNLRSLEICG 431
+L S+++ G
Sbjct: 582 CTSLESIDVSG 592
>gi|313485072|gb|ADR53007.1| InlA [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|404412528|ref|YP_006698115.1| internalin A [Listeria monocytogenes SLCC7179]
gi|298360000|gb|ADI77579.1| internalin A [Listeria monocytogenes]
gi|298360676|gb|ADI77917.1| internalin A [Listeria monocytogenes]
gi|404238227|emb|CBY59628.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC7179]
gi|443428842|gb|AGC92220.1| internalin A [Listeria monocytogenes]
gi|443428848|gb|AGC92223.1| internalin A [Listeria monocytogenes]
gi|443428858|gb|AGC92228.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298359882|gb|ADI77520.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371944024|gb|AEX61852.1| putative F-box_LRR-repeat protein [Megavirus courdo7]
Length = 559
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 121/476 (25%), Positives = 212/476 (44%), Gaps = 93/476 (19%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C N++S++ + I+D L+ LRG++ + +LS +N IT G K N+ +L
Sbjct: 64 CQNIKSINLSRT-NITDKELQFLRGITKI-NLSCCKN--ITGSGFKYLQLAENI---NLS 116
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--------------SGLTNLKSL 185
C +I G L+ L + +N+ N I D ++ L T +K +
Sbjct: 117 GCNQIIGS--ELRYLSNIVKINLSRTN-IDDQAIEYLIFGQKIDGNKEILIQPQTKIKFI 173
Query: 186 QISCSKVTDSGIAYL---KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV 242
+S +K+T+ I+YL K ++I+S F+ S CL L +T + + V
Sbjct: 174 DLSFTKITNCSISYLSNVKIININSCEFVTSS------CLQY----LHNITHIYMNTYNV 223
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 302
D++ L + L LN LSD+ E I L++ N ++IT + L LK L
Sbjct: 224 IIG--DNIKYLNKIKLLVLNDHTLSDNQLEYIQNIEHLEIYNTS-DKITHQGLQKLKNLK 280
Query: 303 NL---ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359
L S N+D+ + + L N C +++D+ L L +LE+INLS+
Sbjct: 281 ILSLRHSYNIDTISFIPTNKIRILDLKN--CHQVTDSS--------LQYLPHLETINLSW 330
Query: 360 -TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 417
I+D L+ L ++ ++NL +ITD GL L+ + + +ITD G +
Sbjct: 331 CYKITDNGLKNLQHVT---NINLSGCHRITDNGLVYLSKADSIN--ISYCIKITDDGLKH 385
Query: 418 LRNFKN--------------------------LRSLEICGGGLTDAGVKHIKDLSSLTLL 451
LRN KN ++ ++ +TD G+ ++ + SL+LL
Sbjct: 386 LRNVKNIKLGYHSTSDIYMIEYFEYDFSKEKYIKEIKNTKQLITDIGLSYLINTQSLSLL 445
Query: 452 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 506
N+TD L+ +S + S++++N +I GL++L + + + CK
Sbjct: 446 YCE---NITDDGLQYLSKIK---SISINNCPKIIGTGLKYLSDCQKINLSNVRLCK 495
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 127/282 (45%), Gaps = 53/282 (18%)
Query: 30 DCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSG-SDVTDSGLIHLKDCSNLQ 84
D +LQ L +N W I G + +++LSG +TD+GL++L S
Sbjct: 314 DSSLQ--YLPHLETINLSWCYKITDNGLKNLQHVTNINLSGCHRITDNGLVYL---SKAD 368
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTR 143
S++ ++CI+I+D GL+HLR + N+ L + + I ++ F + K E + T+
Sbjct: 369 SINISYCIKITDDGLKHLRNVKNI-KLGYHSTSDIYM--IEYFEYDFSKEKYIKEIKNTK 425
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKG 202
+ L L+ +SL++ +C ITD ++ LS +KS+ I +C K+ +G+ Y
Sbjct: 426 QLITDIGLSYLINTQSLSLLYCENITDDGLQYLSK---IKSISINNCPKIIGTGLKY--- 479
Query: 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 262
L+ QK+ L N+ C + L S + +N N
Sbjct: 480 -----------------------LSDCQKINLSNVRLCKSSLKYLSLFSKIK----INNN 512
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
+DD + S+ +K+ GFN+IT L HL + L
Sbjct: 513 ---FTDDDLKYLSRAKKIKL--SGFNKITKNGLKHLYQVDKL 549
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 164/354 (46%), Gaps = 64/354 (18%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ ++D+ L ++++ +L+ +N +I+ GL+ L+ NL LS R + I
Sbjct: 240 LNDHTLSDNQLEYIQNIEHLEI--YNTSDKITHQGLQKLK---NLKILSLRHSYNIDTI- 293
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+F + LDL+ C ++ +L+ L LE++N+ WC ITD+ +K L +TN+
Sbjct: 294 --SFIPTNKIRILDLKNCHQVTDS--SLQYLPHLETINLSWCYKITDNGLKNLQHVTNIN 349
Query: 184 SLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV 242
C ++TD+G+ YL K SI+ +C+ + L+ L N++ +
Sbjct: 350 LS--GCHRITDNGLVYLSKADSINIS-----------YCIKITDDGLKHLR--NVKNIKL 394
Query: 243 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGL 301
+ + Y D EK+ K I + K L ITD + L L
Sbjct: 395 GYHSTSDIYMIEYFEY---------DFSKEKYIKEIKNTKQL------ITD---IGLSYL 436
Query: 302 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 359
N +SL+L C I D+GL L+ +K + +++ ++ +GL++LS + + INLS
Sbjct: 437 INTQSLSLLYCENITDDGLQYLSK---IKSISINNCPKIIGTGLKYLS---DCQKINLSN 490
Query: 360 TGISDGSLRKLAGLSSLKSLN----------LDARQITDTGLAALTSLTGLTHL 403
+ SL+ L+ S +K N A++I +G +T GL HL
Sbjct: 491 VRLCKSSLKYLSLFSKIKINNNFTDDDLKYLSRAKKIKLSGFNKITK-NGLKHL 543
>gi|224066020|ref|XP_002301998.1| predicted protein [Populus trichocarpa]
gi|222843724|gb|EEE81271.1| predicted protein [Populus trichocarpa]
Length = 1124
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 1/283 (0%)
Query: 222 LHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 281
+ +FL+ +++L LL+L G + + S L L L L LS + E+ ++ +L
Sbjct: 399 IPMFLSEIRRLRLLSLGGNLFSGSIPPSFGGLFELETLKLEANNLSGNVPEEIMRLTNLS 458
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341
L+L FN+ E ++ L L LNL +CG ++ L L L+LS +
Sbjct: 459 TLDLSFNKFYGEVPYNIGDLKGLMVLNLSACGFSGRIPASIGSLLKLTTLDLSKQNLSGE 518
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
+ GL +L+ ++L +S + L SL+ LNL + T LT L
Sbjct: 519 LPIEIFGLPSLQVVSLEENKLSGAVPEGFSSLVSLQYLNLTSNSFTGEVPENYGFLTSLA 578
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461
L L I+ A L N +L LE+ L I LS L L+L +N LT
Sbjct: 579 VLSLSRNYISGMIPAELGNCSSLEVLEMRSNHLRGGIPGDISRLSRLKKLDLGENA-LTG 637
Query: 462 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ E I + L+SL++ + ++ L L NL L L S
Sbjct: 638 EIPENIYRCSPLISLSLDGNHLSGHIPESLSKLPNLTVLNLSS 680
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 131/315 (41%), Gaps = 28/315 (8%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
GL +LE+L ++ N ++ + + + LTNL +L +S +K + Y G
Sbjct: 429 GLFELETLKLE-ANNLSGNVPEEIMRLTNLSTLDLSFNKFYGE-VPYNIG---------- 476
Query: 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272
L+ L +LNL C + S+ +L L L+L++ LS +
Sbjct: 477 ---------------DLKGLMVLNLSACGFSGRIPASIGSLLKLTTLDLSKQNLSGELPI 521
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
+ + SL+V++L N+++ L +L+ LNL S E N L +L L
Sbjct: 522 EIFGLPSLQVVSLEENKLSGAVPEGFSSLVSLQYLNLTSNSFTGEVPENYGFLTSLAVLS 581
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 392
LS + L ++LE + + + G ++ LS LK L+L +T
Sbjct: 582 LSRNYISGMIPAELGNCSSLEVLEMRSNHLRGGIPGDISRLSRLKKLDLGENALTGEIPE 641
Query: 393 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 452
+ + L L L G ++ L NL L + L ++ + SL LN
Sbjct: 642 NIYRCSPLISLSLDGNHLSGHIPESLSKLPNLTVLNLSSNSLNGTIPANLSYIPSLIYLN 701
Query: 453 LSQNCNLTDKTLELI 467
LS+N NL + EL+
Sbjct: 702 LSRN-NLEGEIPELL 715
>gi|224124626|ref|XP_002330070.1| predicted protein [Populus trichocarpa]
gi|222871495|gb|EEF08626.1| predicted protein [Populus trichocarpa]
Length = 1126
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 111/203 (54%), Gaps = 12/203 (5%)
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
TG LK L+LSD Q+ SGL+ LS L LE+++LS +D + G SSLKSL+L
Sbjct: 133 TGFSALKSLDLSDNQLTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDL 192
Query: 382 DARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440
++T +GL L+S L L +L L G + DS + + F +L+SL++ +T +G+K
Sbjct: 193 SYNELTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYNEVTGSGLK 252
Query: 441 HIKD-LSSLTLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRIT--SAGLRHLK---- 492
+ L L L+LS N CN D +SG + L LN+S +++T S G+ +
Sbjct: 253 VLSSKLKKLENLDLSDNQCN--DSIFSSLSGFSSLKYLNLSQNQLTGSSTGINSFQVLVS 310
Query: 493 PLKNLRSLTLESCKVTANDIKRL 515
L+NL L L S K+ N + L
Sbjct: 311 GLRNLEELHLYSNKLNNNILSSL 333
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 211/467 (45%), Gaps = 98/467 (20%)
Query: 53 ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNL 108
AS G S+L S+DLS + +T SGL L S LQ L+ N + Q +D + G S+L
Sbjct: 131 ASTGFSALKSLDLSDNQLTGSGLKVLS--SRLQKLE-NLHLSGNQCNDSIFSSITGFSSL 187
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
SL N +T G+K + L KLE+L++ C
Sbjct: 188 KSLDLSY-NELTGSGLKVLS-----------------------SRLQKLENLHLSGNQC- 222
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS 228
DS ++G ++LKSL +S ++VT SG L V +
Sbjct: 223 NDSIFSSITGFSSLKSLDLSYNEVTGSG-------------------------LKVLSSK 257
Query: 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
L+KL L+L + SLS SL YLNL++ QL+ + I S +VL
Sbjct: 258 LKKLENLDLSDNQCNDSIFSSLSGFSSLKYLNLSQNQLTGSS----TGINSFQVL----- 308
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 347
+ GL NLE L+L S + + L +L+G LK L+LSD GS+G L+
Sbjct: 309 ---------VSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSDNMFTGSTG---LN 356
Query: 348 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
GL NLE++ L T + L L L SLK+L+ T G L + + L + L
Sbjct: 357 GLRNLETLYLGNTDFKESILIESLGALPSLKTLDASYSNFTHFG-KGLCNSSSLEEVFLD 415
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK--------DLSSLTLLNLSQNCN 458
+ + A++LRN L +L++ L+ AGV +L +L L LS N N
Sbjct: 416 DSSLP---ASFLRNIGPLSTLKV----LSLAGVDFNSTLPAQGWCELKNLEELYLSGN-N 467
Query: 459 LTDKTLELISGLTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLES 504
L + L+ L L++S++++ + +L LK LRSL++++
Sbjct: 468 LKGVLPPCLGNLSFLQILDLSHNQLEGNIAFSYLSHLKQLRSLSIKN 514
>gi|294358397|gb|ADE73851.1| InlA [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 182/418 (43%), Gaps = 86/418 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIRD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDL 445
L +LT +T L L T+ Y N KN+ I ++D G D+
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPDTISDGGSYAEPDI 458
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D L L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|281211117|gb|EFA85283.1| Histidine kinase A [Polysphondylium pallidum PN500]
Length = 1839
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 124/451 (27%), Positives = 209/451 (46%), Gaps = 79/451 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ++ L + V D + IA+ L++V L ++TD+ +IHL + C + +L + C
Sbjct: 1413 LQNINLNKCRAVTDDKIIAIANMQLPLVNVYLKKCNITDNAIIHLTQSCPKIAALQLSGC 1472
Query: 92 IQISDGGLEHLRGLSN---LTSLSFRRNNAITAQGM-KAFAGLINLVKLDL-ERCTRIHG 146
+ D + + +N L L +R +T+ + K F L N+ + L E +
Sbjct: 1473 KNLGDASINAI--ATNCLGLRELRMKRCPLVTSNSIDKMFRLLHNIHIVTLAESPMAVSD 1530
Query: 147 GLVNLKGLM--KLESLNIKWCNCITDSDMKPLSGLTN-LKSLQIS-CSKVTDSGIAYLKG 202
+ L G +++ +N+ + ITD + L TN ++ L IS C +TD GI +
Sbjct: 1531 NTLRLMGKYCTEIQCVNVSHNSIITDVGLINLVKFTNTIQELNISQCVNITDIGIQH--- 1587
Query: 203 LSISSVIFILCSM--IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 260
I C I+R+ L+ +TSL+ P+ +C D L L+
Sbjct: 1588 ------IAQACGKLRILRMSGLNN-VTSLK----------PIGKSCAD-------LVELD 1623
Query: 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGL 319
++ C KI S +LG+ IT KG L S L C G+ D L
Sbjct: 1624 ISECH----------KISS----DLGY--IT-------KGCPKLTSFKLRRCYGLQDVSL 1660
Query: 320 VNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTN----LESINLSF-TGISDGSLRKLAG- 372
++ G + + L + D G+ + + +T+ L S+N+S+ ++D S+ ++A
Sbjct: 1661 LSEDGEIHAMSKLSVLDWSYGNIEFQTIHSITHSCKSLTSLNISYCKSLTDTSIERIASS 1720
Query: 373 LSSLKSLNLDAR-QITDTGLAALTSL---TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSL 427
LS+LK L +D+ ITD G+ AL+ + + L L G R I+D A Y+ F NL+ L
Sbjct: 1721 LSNLKKLKMDSVVNITDDGIKALSEAPIASSIEDLSLVGCRKISDVSAQYILRFHNLKKL 1780
Query: 428 EICGGGLTDAGVKHIKDLSSLTLLNLS-QNC 457
+ G +T AGV+ I S L+ +S +NC
Sbjct: 1781 SLGGCLMTTAGVESIA-AESFELVKISIRNC 1810
>gi|223698835|gb|ACN19130.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|167861940|gb|ACA05669.1| InlA [Listeria monocytogenes]
gi|167861954|gb|ACA05676.1| InlA [Listeria monocytogenes]
gi|194239400|emb|CAQ76840.1| internalin A [Listeria monocytogenes]
gi|298360640|gb|ADI77899.1| truncated internalin A [Listeria monocytogenes]
gi|298360688|gb|ADI77923.1| truncated internalin A [Listeria monocytogenes]
gi|443428860|gb|AGC92229.1| truncated internalin A [Listeria monocytogenes]
gi|443428878|gb|AGC92238.1| truncated internalin A [Listeria monocytogenes]
Length = 684
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|38154342|gb|AAR12158.1| internalin A [Listeria monocytogenes]
Length = 728
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|130774825|gb|ABO32425.1| InlA [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|407849405|gb|EKG04153.1| hypothetical protein TCSYLVIO_004793 [Trypanosoma cruzi]
Length = 835
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/480 (25%), Positives = 194/480 (40%), Gaps = 104/480 (21%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +D++ + VTD G L +C +Q L C +SD +R + LTSL F
Sbjct: 336 LLELDITENWVTDEGCAALANCGQIQKLKLASCRCVSD-----VRWICALTSLRF----- 385
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
LDL + L L +LE L++ C+ + D+ + G
Sbjct: 386 -----------------LDLSKTHVRSADLQLLTVCQRLEELHVASCSGVKDASF--VEG 426
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238
L +L L ++ + + D+G L+ + + L R F+ L+ L LNLE
Sbjct: 427 LLSLGHLDLTDTSIKDAGTQSLRK---CTALTFLSLQDCRFLTDIQFVEPLKDLLNLNLE 483
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEITDE---- 293
G V A + L L L+L C L+D C ++ +LK L+L +TDE
Sbjct: 484 GTEVVDANIIPLMHCTKLEVLSLRHCLFLTDVRC--LRELKALKSLDLSGTYVTDEGVSD 541
Query: 294 ---------------CLV-HLKGLTNLESLN---------LDSCGIGDEGLVNLTGLCNL 328
CL+ H + L L +L LD G+G G V + +
Sbjct: 542 VSQCISLERIDLSGCCLITHFEFLRPLTALRHVIADRMNVLDVTGLGGSGSVERVSIADC 601
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNL-DARQI 386
K ++GS G+ L +L +L + I+D + L SL+ LNL + I
Sbjct: 602 K-------RLGSMGMLEAPRLLDL---SLKKSAITDSGIHSVLLRCHSLRRLNLQNCTSI 651
Query: 387 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446
T+ L+A+ L LT L + +IT+ A++ L L++ I D++
Sbjct: 652 TE--LSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQM-------VECVEITDVN 702
Query: 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506
SL L+ LV L++S + +TS G+ L NL+ L L C+
Sbjct: 703 SLKYLH-------------------RLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGCR 743
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 107/426 (25%), Positives = 182/426 (42%), Gaps = 105/426 (24%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++ L + +++ +++L +C +L+ + N C + LE L L LT LS N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKP 175
IT +G+ + +L + L+ C ++ G +N L L+ L +L++ N ++D ++
Sbjct: 250 MGITEEGLAFISSCNSLRHIQLDNCMKLQG--INCLGSLIGLRTLSVSR-NRVSDDGIRS 306
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235
LS L NL+ L++ +++ + +SSV +LC L KL L
Sbjct: 307 LSNLRNLEQLRL---------VSFNR---LSSVEPVLC---------------LDKLLEL 339
Query: 236 NL-------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
++ EGC A C G + L L C+ D + SL+ L+L
Sbjct: 340 DITENWVTDEGCAALANC-------GQIQKLKLASCRCVSD-VRWICALTSLRFLDLSKT 391
Query: 289 EITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV---GSSGLR 344
+ L L LE L++ SC G+ D V GL +L L+L+DT + G+ LR
Sbjct: 392 HVRSADLQLLTVCQRLEELHVASCSGVKDASFVE--GLLSLGHLDLTDTSIKDAGTQSLR 449
Query: 345 HLSGLT--------------------NLESINLSFTGISDGSL----------------- 367
+ LT +L ++NL T + D ++
Sbjct: 450 KCTALTFLSLQDCRFLTDIQFVEPLKDLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHC 509
Query: 368 ------RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421
R L L +LKSL+L +TD G++ ++ L +DL SG + +F
Sbjct: 510 LFLTDVRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDL-------SGCCLITHF 562
Query: 422 KNLRSL 427
+ LR L
Sbjct: 563 EFLRPL 568
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 130/280 (46%), Gaps = 38/280 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLSG+ VTD G+ + C +L+ +D + C I+ E LR L+ L + R N
Sbjct: 523 ALKSLDLSGTYVTDEGVSDVSQCISLERIDLSGCCLITH--FEFLRPLTALRHVIADRMN 580
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLM--------------------- 155
+ G+ G ++ ++ + C R+ G++ L+
Sbjct: 581 VLDVTGL---GGSGSVERVSIADCKRLGSMGMLEAPRLLDLSLKKSAITDSGIHSVLLRC 637
Query: 156 -KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILC 213
L LN++ NC + +++ ++ L +L L + K+T+ +A++ + ++ + + C
Sbjct: 638 HSLRRLNLQ--NCTSITELSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQMVEC 695
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 272
I + L L +L L+L VT+ + L+ +L LNL+ C+ L++ C
Sbjct: 696 VEITDVNSLKY----LHRLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGCRYLTEVNCL 751
Query: 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312
+ L+ L+LG ++D +V L LE+L L +C
Sbjct: 752 GELR--LLRELHLGRTTVSDSGIVGLCRCMQLETLILTNC 789
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 29/165 (17%)
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 399
SG+ +L L+NL ++ L T +S+ + L+ SL+ + +++ R + L L+SL
Sbjct: 184 SGVTNLGVLSNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQR 241
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 459
LT L L IT+ G A++ + +LR +++ NC +
Sbjct: 242 LTELSLLNMGITEEGLAFISSCNSLRHIQL-------------------------DNC-M 275
Query: 460 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504
+ + + L GL +L+VS +R++ G+R L L+NL L L S
Sbjct: 276 KLQGINCLGSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVS 320
>gi|313485070|gb|ADR53006.1| InlA [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290350826|dbj|BAI78334.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|340052077|emb|CBY84390.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298359722|gb|ADI77440.1| truncated internalin A [Listeria monocytogenes]
gi|298359752|gb|ADI77455.1| truncated internalin A [Listeria monocytogenes]
gi|298359762|gb|ADI77460.1| truncated internalin A [Listeria monocytogenes]
gi|298359812|gb|ADI77485.1| truncated internalin A [Listeria monocytogenes]
gi|298359814|gb|ADI77486.1| truncated internalin A [Listeria monocytogenes]
gi|298359858|gb|ADI77508.1| truncated internalin A [Listeria monocytogenes]
gi|298359886|gb|ADI77522.1| truncated internalin A [Listeria monocytogenes]
gi|298359900|gb|ADI77529.1| truncated internalin A [Listeria monocytogenes]
gi|298359906|gb|ADI77532.1| truncated internalin A [Listeria monocytogenes]
gi|298359912|gb|ADI77535.1| truncated internalin A [Listeria monocytogenes]
gi|298359944|gb|ADI77551.1| truncated internalin A [Listeria monocytogenes]
gi|298359980|gb|ADI77569.1| truncated internalin A [Listeria monocytogenes]
gi|298359990|gb|ADI77574.1| truncated internalin A [Listeria monocytogenes]
gi|298359992|gb|ADI77575.1| truncated internalin A [Listeria monocytogenes]
gi|298359994|gb|ADI77576.1| truncated internalin A [Listeria monocytogenes]
gi|298360008|gb|ADI77583.1| truncated internalin A [Listeria monocytogenes]
gi|298360026|gb|ADI77592.1| truncated internalin A [Listeria monocytogenes]
gi|298360060|gb|ADI77609.1| truncated internalin A [Listeria monocytogenes]
gi|298360078|gb|ADI77618.1| truncated internalin A [Listeria monocytogenes]
gi|298360082|gb|ADI77620.1| truncated internalin A [Listeria monocytogenes]
gi|298360096|gb|ADI77627.1| truncated internalin A [Listeria monocytogenes]
gi|298360142|gb|ADI77650.1| truncated internalin A [Listeria monocytogenes]
gi|298360144|gb|ADI77651.1| truncated internalin A [Listeria monocytogenes]
gi|298360146|gb|ADI77652.1| truncated internalin A [Listeria monocytogenes]
gi|298360160|gb|ADI77659.1| truncated internalin A [Listeria monocytogenes]
gi|298360192|gb|ADI77675.1| truncated internalin A [Listeria monocytogenes]
gi|298360252|gb|ADI77705.1| truncated internalin A [Listeria monocytogenes]
gi|298360274|gb|ADI77716.1| truncated internalin A [Listeria monocytogenes]
gi|298360276|gb|ADI77717.1| truncated internalin A [Listeria monocytogenes]
gi|298360296|gb|ADI77727.1| truncated internalin A [Listeria monocytogenes]
gi|298360304|gb|ADI77731.1| truncated internalin A [Listeria monocytogenes]
gi|298360316|gb|ADI77737.1| truncated internalin A [Listeria monocytogenes]
gi|298360320|gb|ADI77739.1| truncated internalin A [Listeria monocytogenes]
gi|298360336|gb|ADI77747.1| truncated internalin A [Listeria monocytogenes]
gi|298360342|gb|ADI77750.1| truncated internalin A [Listeria monocytogenes]
gi|298360348|gb|ADI77753.1| truncated internalin A [Listeria monocytogenes]
gi|298360374|gb|ADI77766.1| truncated internalin A [Listeria monocytogenes]
gi|298360380|gb|ADI77769.1| truncated internalin A [Listeria monocytogenes]
gi|298360404|gb|ADI77781.1| truncated internalin A [Listeria monocytogenes]
gi|298360414|gb|ADI77786.1| truncated internalin A [Listeria monocytogenes]
gi|298360426|gb|ADI77792.1| truncated internalin A [Listeria monocytogenes]
gi|298360458|gb|ADI77808.1| truncated internalin A [Listeria monocytogenes]
gi|298360464|gb|ADI77811.1| truncated internalin A [Listeria monocytogenes]
gi|298360488|gb|ADI77823.1| truncated internalin A [Listeria monocytogenes]
gi|298360492|gb|ADI77825.1| truncated internalin A [Listeria monocytogenes]
gi|298360518|gb|ADI77838.1| truncated internalin A [Listeria monocytogenes]
gi|298360538|gb|ADI77848.1| truncated internalin A [Listeria monocytogenes]
gi|298360562|gb|ADI77860.1| truncated internalin A [Listeria monocytogenes]
gi|298360594|gb|ADI77876.1| truncated internalin A [Listeria monocytogenes]
gi|298360616|gb|ADI77887.1| truncated internalin A [Listeria monocytogenes]
gi|298360654|gb|ADI77906.1| truncated internalin A [Listeria monocytogenes]
gi|298360660|gb|ADI77909.1| truncated internalin A [Listeria monocytogenes]
gi|298360668|gb|ADI77913.1| truncated internalin A [Listeria monocytogenes]
gi|298360690|gb|ADI77924.1| truncated internalin A [Listeria monocytogenes]
gi|298360696|gb|ADI77927.1| truncated internalin A [Listeria monocytogenes]
gi|298360720|gb|ADI77939.1| truncated internalin A [Listeria monocytogenes]
gi|443428784|gb|AGC92191.1| truncated internalin A [Listeria monocytogenes]
gi|443428786|gb|AGC92192.1| truncated internalin A [Listeria monocytogenes]
gi|443428790|gb|AGC92194.1| truncated internalin A [Listeria monocytogenes]
gi|443428794|gb|AGC92196.1| truncated internalin A [Listeria monocytogenes]
gi|443428808|gb|AGC92203.1| truncated internalin A [Listeria monocytogenes]
gi|443428810|gb|AGC92204.1| truncated internalin A [Listeria monocytogenes]
gi|443428828|gb|AGC92213.1| truncated internalin A [Listeria monocytogenes]
gi|443428866|gb|AGC92232.1| truncated internalin A [Listeria monocytogenes]
gi|443428874|gb|AGC92236.1| truncated internalin A [Listeria monocytogenes]
gi|443428876|gb|AGC92237.1| truncated internalin A [Listeria monocytogenes]
Length = 699
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290350830|dbj|BAI78336.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LTPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 123/255 (48%), Gaps = 48/255 (18%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSA 486
+ G L D G + L++LT L+L+ N NLT +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLTP-----LSGLTKLTELKLGANQIS-- 308
Query: 487 GLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 ---NISPLAGLTALT 320
>gi|371942142|gb|AEX60883.1| internaline [Listeria monocytogenes]
Length = 790
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|371942074|gb|AEX60849.1| internaline [Listeria monocytogenes]
gi|371942102|gb|AEX60863.1| internaline [Listeria monocytogenes]
gi|371942114|gb|AEX60869.1| internaline [Listeria monocytogenes]
gi|371942124|gb|AEX60874.1| internaline [Listeria monocytogenes]
Length = 790
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|2498124|sp|P70389.1|ALS_MOUSE RecName: Full=Insulin-like growth factor-binding protein complex
acid labile subunit; Short=ALS; Flags: Precursor
gi|7769621|gb|AAF69482.1|AF220294_5 Als splice variant 1 [Mus musculus]
gi|1621613|gb|AAB17270.1| acid labile subunit of insulin-like growth factor [Mus musculus]
gi|120537324|gb|AAI29876.1| Insulin-like growth factor binding protein, acid labile subunit
[Mus musculus]
gi|120537326|gb|AAI29877.1| Insulin-like growth factor binding protein, acid labile subunit
[Mus musculus]
gi|148690424|gb|EDL22371.1| insulin-like growth factor binding protein, acid labile subunit,
isoform CRA_a [Mus musculus]
Length = 603
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 180/476 (37%), Gaps = 51/476 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F +L
Sbjct: 95 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFRHTPSLAS 150
Query: 136 LDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 151 LSLGNNLLGRLEEGL--FRGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLT 207
Query: 194 DSGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQK 231
A L GL S+ + +FI + +L+ +T+ ++
Sbjct: 208 YLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKA 267
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 268 LRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIR 327
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+GL LE L L+ I + + GL N+ + LS + S GL
Sbjct: 328 QLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGR 387
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L S++L + + L AGLS L+ L L I+ +L L+ L LDL ++T
Sbjct: 388 LHSLHLEHSCLGRIRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLT 447
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+ L L + LT + L L+LS N L L S L
Sbjct: 448 HLPRQLFQGLGQLEYLLLSNNQLTMLSEDVLGPLQRAFWLDLSHN-RLETPAEGLFSSLG 506
Query: 472 GLVSLNVSNSR----ITSAGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L LN+ N+ + GL L PLK LR L++ V ++
Sbjct: 507 RLRYLNLRNNSLQTFVPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562
>gi|167861888|gb|ACA05643.1| InlA [Listeria monocytogenes]
gi|194326163|emb|CAQ77240.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|194239392|emb|CAQ76836.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|60359992|dbj|BAD90215.1| mKIAA4111 protein [Mus musculus]
Length = 619
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 180/476 (37%), Gaps = 51/476 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F +L
Sbjct: 111 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFRHTPSLAS 166
Query: 136 LDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 167 LSLGNNLLGRLEEGL--FRGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLT 223
Query: 194 DSGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQK 231
A L GL S+ + +FI + +L+ +T+ ++
Sbjct: 224 YLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKA 283
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 284 LRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIR 343
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+GL LE L L+ I + + GL N+ + LS + S GL
Sbjct: 344 QLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGR 403
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L S++L + + L AGLS L+ L L I+ +L L+ L LDL ++T
Sbjct: 404 LHSLHLEHSCLGRIRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLT 463
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+ L L + LT + L L+LS N L L S L
Sbjct: 464 HLPRQLFQGLGQLEYLLLSNNQLTMLSEDVLGPLQRAFWLDLSHN-RLETPAEGLFSSLG 522
Query: 472 GLVSLNVSNSR----ITSAGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L LN+ N+ + GL L PLK LR L++ V ++
Sbjct: 523 RLRYLNLRNNSLQTFVPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 578
>gi|83747318|ref|ZP_00944359.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|207739111|ref|YP_002257504.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
gi|83726018|gb|EAP73155.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|206592484|emb|CAQ59390.1| type III effector protein gala2 [Ralstonia solanacearum IPO1609]
Length = 978
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 177/402 (44%), Gaps = 33/402 (8%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL L L+SLD + +I D ++ L ++LTSL+
Sbjct: 575 SVRHLDLSGCTGSAVSEAGLAVLARLP-LESLDLS-GTRIGDREVQALASSTSLTSLNLS 632
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L R T L +LN+ N I D+ ++
Sbjct: 633 -GNRIGNAGAQA-----------LGRNT-------------VLTALNVS-ANPIGDAGVQ 666
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234
L+ +L SL++ + ++GIA L ++ + I + + L Q L
Sbjct: 667 ALADSRSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAE--LARNQTLAS 724
Query: 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294
L C +T + L+ + SL L + + D G ++ SL+ LNL N IT +
Sbjct: 725 LKANACGLTNSMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQG 784
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
L L+ L SL++ G GD G + L+ L L+L +GS+G + L+ L S
Sbjct: 785 LRPLELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLAANRTLIS 844
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414
++L I + + LA L SLN+ ++ D +AL LT LD+ R++
Sbjct: 845 LDLRGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAASALAESLTLTSLDVSVNRLSGQA 904
Query: 415 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
A L L SL I + G + + + SLT L+ N
Sbjct: 905 ARALAGNATLTSLNISHNHIGPDGAQALAESPSLTSLDARAN 946
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 157/377 (41%), Gaps = 30/377 (7%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + ++G L + L +L+ + I D G++ L
Sbjct: 612 IGDREVQALASS-TSLTSLNLSGNRIGNAGAQALGRNTVLTALNVS-ANPIGDAGVQALA 669
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+LTSL R I G+ A A L LD+ L L SL
Sbjct: 670 DSRSLTSLELR-GIGIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLASLKAN 728
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLH 223
C +T+S + L+ + +L++L++ + + D+G+
Sbjct: 729 ACG-LTNSMAQQLARIRSLRTLEVGSNSIGDTGV-------------------------- 761
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ + L LNL P+T L L +L L+++ D G SK +L L
Sbjct: 762 LAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGALLLSKNRALTSL 821
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
LGFN I L L SL+L I + L L L +SD ++
Sbjct: 822 KLGFNGIGSAGAQGLAANRTLISLDLRGNTIDVDAAKALANTGCLTSLNVSDCKLDDEAA 881
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
L+ L S+++S +S + R LAG ++L SLN+ I G AL LT L
Sbjct: 882 SALAESLTLTSLDVSVNRLSGQAARALAGNATLTSLNISHNHIGPDGAQALAESPSLTSL 941
Query: 404 DLFGARITDSGAAYLRN 420
D I ++GA L N
Sbjct: 942 DARANGIGEAGARALEN 958
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 142/322 (44%), Gaps = 34/322 (10%)
Query: 226 LTSLQKLTL--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
L L +L L L+L G + + +L++ SL LNL+ ++ + G + + L L
Sbjct: 594 LAVLARLPLESLDLSGTRIGDREVQALASSTSLTSLNLSGNRIGNAGAQALGRNTVLTAL 653
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
N+ N I D + L +L SL L GIG+ G+ L L+ L++S +
Sbjct: 654 NVSANPIGDAGVQALADSRSLTSLELRGIGIGEAGIAALASNTVLRSLDISSNDLSEQSA 713
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-------- 395
L+ L S+ + G+++ ++LA + SL++L + + I DTG+ A+
Sbjct: 714 AELARNQTLASLKANACGLTNSMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTL 773
Query: 396 -------SLTG---------LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
+L G LT LD+ G D GA L + L SL++ G+ AG
Sbjct: 774 NLSHNPITLQGLRPLELSRTLTSLDVSGIGCGDRGALLLSKNRALTSLKLGFNGIGSAGA 833
Query: 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGLRHLKPLKNLR 498
+ + +L L+L N D L + TG L SLNVS+ ++ L
Sbjct: 834 QGLAANRTLISLDLRGNTIDVDAAKALAN--TGCLTSLNVSDCKLDDEAASALA-----E 886
Query: 499 SLTLESCKVTANDIKRLQSRDL 520
SLTL S V+ N + +R L
Sbjct: 887 SLTLTSLDVSVNRLSGQAARAL 908
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 109/256 (42%), Gaps = 57/256 (22%)
Query: 222 LHVF--LTSLQ---KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 276
LH + LTSLQ TL +L+ P T L +L+L+ C G + F
Sbjct: 102 LHHYPNLTSLQLEGNFTLQDLKALPAT------------LRHLDLSACT---GGAKSF-- 144
Query: 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336
E + +L GL LESLN+ IGD+G L +L+ L ++
Sbjct: 145 ----------------EAIAYLAGLP-LESLNVAGADIGDDGARLLAANPSLRALNAANG 187
Query: 337 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 396
+G++G R L+ L S++L+ GI D R LA SL +L + +TD G AL
Sbjct: 188 GIGAAGARALAESPVLASLDLTRNGIGDEGARALADSRSLTNLAVLNCLVTDVGARALAG 247
Query: 397 LTGLTHLDL------------------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438
LT LDL IT GA L ++L SL I G D G
Sbjct: 248 NGTLTALDLGNLITETGNELEQAGYDRTANEITARGAWALAQNRSLTSLSIQGNLCGDGG 307
Query: 439 VKHIKDLSSLTLLNLS 454
V+ + +LT LN++
Sbjct: 308 VQALAKNRTLTSLNVA 323
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 402 HLDL---FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
HLDL G+ ++++G A L L SL++ G + D V+ + +SLT LNLS N
Sbjct: 578 HLDLSGCTGSAVSEAGLAVLARLP-LESLDLSGTRIGDREVQALASSTSLTSLNLSGN-R 635
Query: 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+ + + + T L +LNVS + I AG++ L ++L SL L + I L S
Sbjct: 636 IGNAGAQALGRNTVLTALNVSANPIGDAGVQALADSRSLTSLELRGIGIGEAGIAALAS 694
>gi|31982258|ref|NP_032366.2| insulin-like growth factor-binding protein complex acid labile
subunit precursor [Mus musculus]
gi|12836483|dbj|BAB23677.1| unnamed protein product [Mus musculus]
Length = 603
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 180/476 (37%), Gaps = 51/476 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F +L
Sbjct: 95 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFRHTPSLAS 150
Query: 136 LDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 151 LSLGNNLLGRLEEGL--FRGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLT 207
Query: 194 DSGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQK 231
A L GL S+ + +FI + +L+ +T+ ++
Sbjct: 208 YLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKA 267
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 268 LRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIR 327
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+GL LE L L+ I + + GL N+ + LS + S GL
Sbjct: 328 QLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGR 387
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L S++L + + L AGLS L+ L L I+ +L L+ L LDL ++T
Sbjct: 388 LHSLHLEHSCLGRIRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLT 447
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+ L L + LT + L L+LS N L L S L
Sbjct: 448 HLPRQLFQGLGQLEYLLLSNNQLTMLSEDVLGPLQRAFWLDLSHN-RLETPAEGLFSSLG 506
Query: 472 GLVSLNVSNSR----ITSAGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L LN+ N+ + GL L PLK LR L++ V ++
Sbjct: 507 RLRYLNLRNNSLQTFVPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 562
>gi|7769619|gb|AAF69480.1|AF220294_3 Als splice variant 2 [Mus musculus]
Length = 687
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/476 (25%), Positives = 180/476 (37%), Gaps = 51/476 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
NL SLDF + + L L GL NL L RN + + F +L
Sbjct: 179 QNLSSLDF---LNLQGSWLRSLEPQALLGLQNLYHLHLERN-LLRSLAAGLFRHTPSLAS 234
Query: 136 LDLER--CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L R+ GL +GL L LN+ W + + D GL NL L ++ +K+T
Sbjct: 235 LSLGNNLLGRLEEGL--FRGLSHLWDLNLGWNSLVVLPDTV-FQGLGNLHELVLAGNKLT 291
Query: 194 DSGIAYLKGL--------------SISSVIFILCSMIIRLFCLHVFLTS--------LQK 231
A L GL S+ + +FI + +L+ +T+ ++
Sbjct: 292 YLQPALLCGLGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKA 351
Query: 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291
L L+L V D+ L L L L ++ F + L+ L LG N I
Sbjct: 352 LRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIR 411
Query: 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+GL LE L L+ I + + GL N+ + LS + S GL
Sbjct: 412 QLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGR 471
Query: 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 411
L S++L + + L AGLS L+ L L I+ +L L+ L LDL ++T
Sbjct: 472 LHSLHLEHSCLGRIRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLT 531
Query: 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471
+ L L + LT + L L+LS N L L S L
Sbjct: 532 HLPRQLFQGLGQLEYLLLSNNQLTMLSEDVLGPLQRAFWLDLSHN-RLETPAEGLFSSLG 590
Query: 472 GLVSLNVSNSR----ITSAGLRHLK----------PLKNLRSLTLESCKVTANDIK 513
L LN+ N+ + GL L PLK LR L++ V ++
Sbjct: 591 RLRYLNLRNNSLQTFVPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVVPRFVQ 646
>gi|46447627|ref|YP_008992.1| hypothetical protein pc1993, partial [Candidatus Protochlamydia
amoebophila UWE25]
gi|46401268|emb|CAF24717.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 129
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+Q LD +C I+D GL HL+ L LT L + +T G+ L+ L +L+L C
Sbjct: 1 MQHLDL-WCTNITDAGLAHLKPLVTLTHLRLSECDNLTDAGLAHLTPLVALQQLNLSGCK 59
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
++ GL +L L+ L+ LN+ C +TD+ + L+ L L+ L+++ C TD+G+
Sbjct: 60 KLTDAGLAHLTSLVALQQLNLSGCKKLTDAGLAHLTPLVALQHLELTGCYNFTDAGLERF 119
Query: 201 KGLSISS 207
K L+ S
Sbjct: 120 KTLATSP 126
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 458
+ HLDL+ ITD+G A+L+ L L + LTDAG+ H+ L +L LNLS
Sbjct: 1 MQHLDLWCTNITDAGLAHLKPLVTLTHLRLSECDNLTDAGLAHLTPLVALQQLNLSGCKK 60
Query: 459 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQ 516
LTD L ++ L L LN+S ++T AGL HL PL L+ L L C T ++R +
Sbjct: 61 LTDAGLAHLTSLVALQQLNLSGCKKLTDAGLAHLTPLVALQHLELTGCYNFTDAGLERFK 120
Query: 517 S-RDLPNLV 524
+ PNL+
Sbjct: 121 TLATSPNLI 129
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 71/150 (47%), Gaps = 29/150 (19%)
Query: 280 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQ 337
++ L+L ITD L HLK L L L L C + D GL +LT L L+ L LS +
Sbjct: 1 MQHLDLWCTNITDAGLAHLKPLVTLTHLRLSECDNLTDAGLAHLTPLVALQQLNLSGCKK 60
Query: 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 397
+ +GL HL+ L L+ +NLS +++TD GLA LT L
Sbjct: 61 LTDAGLAHLTSLVALQQLNLS-----------------------GCKKLTDAGLAHLTPL 97
Query: 398 TGLTHLDLFG-ARITDSGAAYLRNFKNLRS 426
L HL+L G TD+G L FK L +
Sbjct: 98 VALQHLELTGCYNFTDAG---LERFKTLAT 124
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GG 433
++ L+L ITD GLA L L LTHL L +TD+G A+L L+ L + G
Sbjct: 1 MQHLDLWCTNITDAGLAHLKPLVTLTHLRLSECDNLTDAGLAHLTPLVALQQLNLSGCKK 60
Query: 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLK 492
LTDAG+ H+ L +L LNLS LTD L ++ L L L ++ T AGL K
Sbjct: 61 LTDAGLAHLTSLVALQQLNLSGCKKLTDAGLAHLTPLVALQHLELTGCYNFTDAGLERFK 120
Query: 493 PL 494
L
Sbjct: 121 TL 122
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 30/143 (20%)
Query: 141 CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
CT I GL +LK L+ L L + C+ +TD+ + L+ L L+ L +S C K+TD+G+A
Sbjct: 8 CTNITDAGLAHLKPLVTLTHLRLSECDNLTDAGLAHLTPLVALQQLNLSGCKKLTDAGLA 67
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLF 257
+L TSL L LNL GC +T A L L+ L +L
Sbjct: 68 HL--------------------------TSLVALQQLNLSGCKKLTDAGLAHLTPLVALQ 101
Query: 258 YLNLNRC-QLSDDGCEKFSKIGS 279
+L L C +D G E+F + +
Sbjct: 102 HLELTGCYNFTDAGLERFKTLAT 124
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 242 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLK 299
+T A L L L +L +L L+ C L+D G + + +L+ LNL G ++TD L HL
Sbjct: 11 ITDAGLAHLKPLVTLTHLRLSECDNLTDAGLAHLTPLVALQQLNLSGCKKLTDAGLAHLT 70
Query: 300 GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 334
L L+ LNL C + D GL +LT L L+ LEL+
Sbjct: 71 SLVALQQLNLSGCKKLTDAGLAHLTPLVALQHLELT 106
>gi|298360234|gb|ADI77696.1| internalin A [Listeria monocytogenes]
gi|298360500|gb|ADI77829.1| internalin A [Listeria monocytogenes]
gi|298360708|gb|ADI77933.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 186/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + +L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISSLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNDISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 126/270 (46%), Gaps = 56/270 (20%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--- 485
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISS 312
Query: 486 -AG-------------LRHLKPLKNLRSLT 501
AG L + P+ NL++LT
Sbjct: 313 LAGLTALTNLELNENQLEDISPISNLKNLT 342
>gi|148607488|gb|ABQ95520.1| InlA [Listeria monocytogenes]
Length = 797
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942100|gb|AEX60862.1| internaline [Listeria monocytogenes]
Length = 789
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|148607482|gb|ABQ95519.1| InlA [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|130774793|gb|ABO32411.1| InlA [Listeria monocytogenes]
gi|194239384|emb|CAQ76832.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298359950|gb|ADI77554.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|147852997|emb|CAN79070.1| hypothetical protein VITISV_031965 [Vitis vinifera]
Length = 661
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 126/283 (44%), Gaps = 1/283 (0%)
Query: 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 287
SL KLT L+L +T + L L YLNL+ L+D ++ L L+L F
Sbjct: 141 SLTKLTHLDLSFNQLTGPIPHQIGTLTELTYLNLSSNVLTDVIPSSLGRLTKLTHLDLSF 200
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N++T + LT L L L S + D +L L L L+L ++ S +
Sbjct: 201 NQLTGPIPHQIGTLTELTYLPLSSNVLTDVIPSSLGRLTKLTHLDLYCNKLIGSIPHQIG 260
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
LT L ++LS ++ L ++ L L L ++T ++L LT LTHL LF
Sbjct: 261 SLTKLTHLDLSSNQLTGPILNQIGTLIELTYLEFSGNELTGVIPSSLGRLTKLTHLGLFY 320
Query: 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467
++ S + L L I G LT A + L+ L L+L +N + I
Sbjct: 321 NQLNGSIPHQIGTLTELTYLHISGNELTGAMPSSLGCLTKLISLDLCKN-QINGSIPPEI 379
Query: 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510
+ LV+L++S++ I+ LK LK L L L +++ N
Sbjct: 380 GNIKSLVTLDLSDNLISGEIPSSLKNLKKLGRLDLSYNRLSGN 422
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 133/318 (41%), Gaps = 26/318 (8%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225
N +TD + LT L L +S +++T I + G +++ + ++ S + +
Sbjct: 129 NQLTDPIPHQIGSLTKLTHLDLSFNQLTGP-IPHQIG-TLTELTYLNLSSNVLTDVIPSS 186
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L L KLT L+L +T + L L YL L+ L+D ++ L L+L
Sbjct: 187 LGRLTKLTHLDLSFNQLTGPIPHQIGTLTELTYLPLSSNVLTDVIPSSLGRLTKLTHLDL 246
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
N++ + LT L L+L S + L + L L LE S ++
Sbjct: 247 YCNKLIGSIPHQIGSLTKLTHLDLSSNQLTGPILNQIGTLIELTYLEFSGNELTGVIPSS 306
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405
L LT L + L + ++ ++ L+ L L++ ++T ++L LT L LDL
Sbjct: 307 LGRLTKLTHLGLFYNQLNGSIPHQIGTLTELTYLHISGNELTGAMPSSLGCLTKLISLDL 366
Query: 406 FGARITDSGAAYLRNFKNLRSLEICG---GGLTDAGVKHIKDLSSL-------------- 448
+I S + N K+L +L++ G + +K++K L L
Sbjct: 367 CKNQINGSIPPEIGNIKSLVTLDLSDNLISGEIPSSLKNLKKLGRLDLSYNRLSGNLPSF 426
Query: 449 -------TLLNLSQNCNL 459
T +NLSQN +L
Sbjct: 427 ITNNCKQTTINLSQNDHL 444
>gi|371942116|gb|AEX60870.1| internaline [Listeria monocytogenes]
Length = 789
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942084|gb|AEX60854.1| internaline [Listeria monocytogenes]
Length = 790
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|255571507|ref|XP_002526701.1| F-box protein, atfbl3, putative [Ricinus communis]
gi|223534001|gb|EEF35723.1| F-box protein, atfbl3, putative [Ricinus communis]
Length = 669
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 189/425 (44%), Gaps = 46/425 (10%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
GV D + +IA + + S+DLS +T+ L + +L+ L C I D L
Sbjct: 193 GVTDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLKSLEDLVLEGCFGIDDESLTAF 252
Query: 103 R-GLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGGLVN-LKGLMKLES 159
+ G +L +L I+ G+ + G L +L L + + L N LK L L+S
Sbjct: 253 KHGCKSLKTLDMSSCQNISHVGLSSLIGGAGGLEQLTLAYGSPVTLALANSLKQLSVLQS 312
Query: 160 LNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSKVTDSGIAYL--KGLSISSVIFILCSM 215
+ + C IT + +K L +LK L +S C VTD G++ L K + + C
Sbjct: 313 VKLDGCM-ITSAGLKALGNWCISLKELSLSKCVGVTDEGLSCLVTKHRDLRKLDITCCRK 371
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275
I + H+ +S LT L +E C + + F L RCQL
Sbjct: 372 ITDVSISHI-TSSCTNLTSLRMESCTLVSR---------EAFVLIGQRCQL--------- 412
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCN-LKCLEL 333
L+ L+L NEI DE L + L SL L C I DEGL + C L L+L
Sbjct: 413 ----LEELDLTDNEIDDEGLKSVSSCLKLASLKLGICLNISDEGLAYVGKHCTRLTELDL 468
Query: 334 SDTQ-VGSSGLRHL-SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN-LDARQ---I 386
+ V +G+ + S +LE IN+S+ I+D SL LS K LN ++R I
Sbjct: 469 YRSAGVTDTGILAIASSCLDLEMINMSYCRDITDSSL---ISLSKCKKLNTFESRGCPLI 525
Query: 387 TDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIK 443
T GLAA+ +T LD+ I D+G L F +NLR + + +TD G+ +
Sbjct: 526 TSLGLAAIAVGCKQITKLDIKKCHSIDDAGMLPLALFSQNLRQINLSYSSITDVGLLSLA 585
Query: 444 DLSSL 448
+S L
Sbjct: 586 SISCL 590
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 145/543 (26%), Positives = 221/543 (40%), Gaps = 117/543 (21%)
Query: 42 PGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIHLK-DCSNLQSLDFNFCIQISDGG 98
P +ND + +I+ S +SL S+DLS S + +GL L +C NL ++D + ++ D
Sbjct: 88 PRINDSSLTIISNSCKNSLKSIDLSRSRFFSYNGLTSLALNCKNLVNIDLSNATELRDAA 147
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ NL L R IT G+ A G KL
Sbjct: 148 ASAVAEAKNLERLWLGRCKLITDIGVGCIA-----------------------VGCKKLR 184
Query: 159 SLNIKWCNCITDSDM----------------------KPLSGLTNLKSLQ----ISCSKV 192
+++KWC +TD + K L + LKSL+ C +
Sbjct: 185 LISLKWCLGVTDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLKSLEDLVLEGCFGI 244
Query: 193 TDS-------GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTS-------LQKLTLLNLE 238
D G LK L +SS C I HV L+S L++LTL
Sbjct: 245 DDESLTAFKHGCKSLKTLDMSS-----CQNIS-----HVGLSSLIGGAGGLEQLTLAY-- 292
Query: 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLG----------- 286
G PVT A +SL L L + L+ C ++ G + SLK L+L
Sbjct: 293 GSPVTLALANSLKQLSVLQSVKLDGCMITSAGLKALGNWCISLKELSLSKCVGVTDEGLS 352
Query: 287 ----------------FNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCN- 327
+ITD + H+ TNL SL ++SC + E V + C
Sbjct: 353 CLVTKHRDLRKLDITCCRKITDVSISHITSSCTNLTSLRMESCTLVSREAFVLIGQRCQL 412
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAG-LSSLKSLNL-DAR 384
L+ L+L+D ++ GL+ +S L S+ L ISD L + + L L+L +
Sbjct: 413 LEELDLTDNEIDDEGLKSVSSCLKLASLKLGICLNISDEGLAYVGKHCTRLTELDLYRSA 472
Query: 385 QITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGL-TDAGVKH 441
+TDTG+ A+ +S L +++ R ITDS L K L + E G L T G+
Sbjct: 473 GVTDTGILAIASSCLDLEMINMSYCRDITDSSLISLSKCKKLNTFESRGCPLITSLGLAA 532
Query: 442 IK-DLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 499
I +T L++ + ++ D L L L +N+S S IT GL L + L++
Sbjct: 533 IAVGCKQITKLDIKKCHSIDDAGMLPLALFSQNLRQINLSYSSITDVGLLSLASISCLQN 592
Query: 500 LTL 502
+T+
Sbjct: 593 MTV 595
>gi|130774819|gb|ABO32422.1| InlA [Listeria monocytogenes]
gi|167861894|gb|ACA05646.1| InlA [Listeria monocytogenes]
gi|167861946|gb|ACA05672.1| InlA [Listeria monocytogenes]
gi|167861948|gb|ACA05673.1| InlA [Listeria monocytogenes]
gi|194239402|emb|CAQ76841.1| internalin A [Listeria monocytogenes]
gi|298360052|gb|ADI77605.1| internalin A [Listeria monocytogenes]
gi|298360164|gb|ADI77661.1| internalin A [Listeria monocytogenes]
gi|298360372|gb|ADI77765.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|298360230|gb|ADI77694.1| internalin A [Listeria monocytogenes]
gi|298360588|gb|ADI77873.1| internalin A [Listeria monocytogenes]
gi|298360606|gb|ADI77882.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698901|gb|ACN19174.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|226505408|ref|NP_001147557.1| LOC100281166 [Zea mays]
gi|195612174|gb|ACG27917.1| EIN3-binding F-box protein 1 [Zea mays]
gi|413943753|gb|AFW76402.1| EIN3-binding F-box protein 1 [Zea mays]
Length = 626
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 124/471 (26%), Positives = 210/471 (44%), Gaps = 66/471 (14%)
Query: 39 GQYP--GVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQI 94
G +P GV D + +A L S+ L VTD+GL + +C +L+ LD + C I
Sbjct: 152 GSHPARGVTDAGISALARGCPELRSLTLWDVPQVTDAGLAEVAAECHSLERLDISGCPMI 211
Query: 95 SDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+D GL + +G L SL+ + + +G+KA +
Sbjct: 212 TDKGLAAVAQGCPELKSLTIEGCSGVANEGLKAVG-----------------------RF 248
Query: 154 LMKLESLNIKWCNCITDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYL--KGLSISSV 208
KL++++IK C + D + L + ++L +++ +TD+ +A + G SI +
Sbjct: 249 CAKLQAVSIKNCALVDDQGVSGLVCSATASSLTKVRLQGLNITDASLAVIGYYGKSIKDL 308
Query: 209 IFI-LCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLSALG-SLFYLNLNRCQ 265
L ++ R F + LQKL + + CP +T L S++ SL +NL RC
Sbjct: 309 TLSRLPAVGERGFWVMANALGLQKLRRMTVVSCPGLTDLALASVAKFSPSLRLVNLKRCS 368
Query: 266 LSDDGC-EKFSKIGSLKVLNLGFNEITDEC-LVHLKGL--------TNLESLNLDSC-GI 314
DGC ++F++ S KVL N +EC V L G+ +SL+L C GI
Sbjct: 369 KVSDGCLKEFAE--SSKVLE---NLQIEECSRVTLTGILAFLLNCSPKFKSLSLSKCVGI 423
Query: 315 GD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLS-FTGISDGSLRK 369
D L +L+ L + D + + G+ LE++NLS + ++D
Sbjct: 424 KDICSAPAQLPVCKSLRSLAIKDCPGFTDASLAVVGMICPQLENVNLSGLSAVTDSGFLP 483
Query: 370 LAGLSSLKSLNLD---ARQITDTGLAALTSLTG--LTHLDLFG-ARITDSG-AAYLRNFK 422
L S+ +N+D +TD ++AL G L HL L G ++ITD+ A +
Sbjct: 484 LIKSSNSGLVNVDLNGCENLTDAAVSALVKAHGASLAHLSLEGCSKITDASLFAISESCS 543
Query: 423 NLRSLEICGGGLTDAGVKHIKDLSSLTL--LNLSQNCNLTDKTLELISGLT 471
L L++ ++D GV + L L L+LS +T K++ + ++
Sbjct: 544 QLAELDLSNCMVSDYGVAVLAAAKQLRLRVLSLSGCMKVTQKSVPFLGSMS 594
>gi|22347554|gb|AAM95922.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 148 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 174
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 175 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 231
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 232 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 286
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 287 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 344
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 345 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 403
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 36 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 88
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 143
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 144 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
>gi|47096455|ref|ZP_00234048.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|254913677|ref|ZP_05263689.1| internalin A [Listeria monocytogenes J2818]
gi|254937992|ref|ZP_05269689.1| internalin A [Listeria monocytogenes F6900]
gi|386046091|ref|YP_005964423.1| internalin A [Listeria monocytogenes J0161]
gi|47015176|gb|EAL06116.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|194239410|emb|CAQ76845.1| internalin A [Listeria monocytogenes]
gi|223006792|gb|ACM69353.1| internalin A [Listeria monocytogenes]
gi|223006794|gb|ACM69354.1| internalin A [Listeria monocytogenes]
gi|258610604|gb|EEW23212.1| internalin A [Listeria monocytogenes F6900]
gi|293591690|gb|EFG00025.1| internalin A [Listeria monocytogenes J2818]
gi|298359952|gb|ADI77555.1| internalin A [Listeria monocytogenes]
gi|298359956|gb|ADI77557.1| internalin A [Listeria monocytogenes]
gi|298359986|gb|ADI77572.1| internalin A [Listeria monocytogenes]
gi|298360086|gb|ADI77622.1| internalin A [Listeria monocytogenes]
gi|298360130|gb|ADI77644.1| internalin A [Listeria monocytogenes]
gi|298360206|gb|ADI77682.1| internalin A [Listeria monocytogenes]
gi|298360572|gb|ADI77865.1| internalin A [Listeria monocytogenes]
gi|298360644|gb|ADI77901.1| internalin A [Listeria monocytogenes]
gi|345533082|gb|AEO02523.1| internalin A [Listeria monocytogenes J0161]
gi|443428774|gb|AGC92186.1| internalin A [Listeria monocytogenes]
gi|443428776|gb|AGC92187.1| internalin A [Listeria monocytogenes]
gi|443428868|gb|AGC92233.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942136|gb|AEX60880.1| internaline [Listeria monocytogenes]
Length = 789
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|389603381|ref|XP_001569126.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505832|emb|CAM44261.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1207
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 17/289 (5%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L SL++L L++ P+ L +L+ SL L L+RC+ E ++ L+ L+L
Sbjct: 426 LGSLKQLRCLHILHTPLHETFLQALTTCSSLECLILHRCR-GVRSLEPLRRLRQLQSLSL 484
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGL 343
+TD L+ L T L L LD C I D L NL G L+ L + T + ++ +
Sbjct: 485 HGLSVTDTGLLPLTSCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPRTLLSNANM 542
Query: 344 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
+H+ L ++L S ++D + L L++L+ LNL +TD G +AL + L
Sbjct: 543 QHIGLCDKLVELHLQSLRQLTD--IGGLKNLTALRVLNLRDNLVTDEGCSALYCMPSLQL 600
Query: 403 LDLFGARITDSGAAYL----RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458
L+L R S AA L R + L SL++ +TD+G++ I+ +SL LNL C
Sbjct: 601 LNLASCRCITSLAAALSTSGRWTQRLLSLDLSQTNITDSGLRCIQQCTSLRYLNL---CG 657
Query: 459 LTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 505
++ + L + + L L++ + IT R+L +NLR L+L C
Sbjct: 658 CSELRLLHWLKKMYSLRWLHLGGTYITDEETKRYLPYARNLRFLSLSGC 706
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 155/359 (43%), Gaps = 76/359 (21%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+GL+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 479 LQSLSLHGLSVTDTGLLPLTSCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 535
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ M+ LV+L L+ +L+ L +D+ L
Sbjct: 536 LLSNANMQHIGLCDKLVELHLQ----------SLRQL----------------TDIGGLK 569
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNL 237
LT L+ L + + VTD G CS L+C + L LLNL
Sbjct: 570 NLTALRVLNLRDNLVTDEG----------------CSA---LYC-------MPSLQLLNL 603
Query: 238 EGCPVTAACLDSLSALG----SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-GFNEITD 292
C + +LS G L L+L++ ++D G + SL+ LNL G +E+
Sbjct: 604 ASCRCITSLAAALSTSGRWTQRLLSLDLSQTNITDSGLRCIQQCTSLRYLNLCGCSELR- 662
Query: 293 ECLVH-LKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLS--- 347
L+H LK + +L L+L I DE L NL+ L LS G S +R L+
Sbjct: 663 --LLHWLKKMYSLRWLHLGGTYITDEETKRYLPYARNLRFLSLS----GCSNVRSLTFAG 716
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 405
L LE + L FTG++D L L L+ L+L + I D L L +L L L++
Sbjct: 717 KLLQLEYLCLDFTGVADNDLSYLCWCRKLRYLSLQSCAHIRDVSL--LCALPALLELNV 773
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 96/195 (49%), Gaps = 15/195 (7%)
Query: 318 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 376
G +L L L+CL + T + + L+ L+ ++LE + L G+ SL L L L
Sbjct: 422 GTRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECLILHRCRGVR--SLEPLRRLRQL 479
Query: 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 434
+SL+L +TDTGL LTS T L L L R ITD ++L N + L L + L
Sbjct: 480 QSLSLHGLSVTDTGLLPLTSCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 537
Query: 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR---ITSAGLRHL 491
++A ++HI L L+L LTD I GL L +L V N R +T G L
Sbjct: 538 SNANMQHIGLCDKLVELHLQSLRQLTD-----IGGLKNLTALRVLNLRDNLVTDEGCSAL 592
Query: 492 KPLKNLRSLTLESCK 506
+ +L+ L L SC+
Sbjct: 593 YCMPSLQLLNLASCR 607
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 151/363 (41%), Gaps = 70/363 (19%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSM 215
LE L + C + ++PL L L+SL + VTD+G+ L + + ++ C
Sbjct: 456 LECLILHRCRGV--RSLEPLRRLRQLQSLSLHGLSVTDTGLLPLTSCTQLRQLVLDECRQ 513
Query: 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC-QLSDDGC 271
I L L +L++L + P T ++ +G L L+L QL+D G
Sbjct: 514 ITDLSFLANLRGTLERLLM------PRTLLSNANMQHIGLCDKLVELHLQSLRQLTDIG- 566
Query: 272 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331
+ +L+VLNL N +TDE L + +L+ LNL SC +C+
Sbjct: 567 -GLKNLTALRVLNLRDNLVTDEGCSALYCMPSLQLLNLASC----------------RCI 609
Query: 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL----DARQIT 387
+ +SG L S++LS T I+D LR + +SL+ LNL + R
Sbjct: 610 TSLAAALSTSG----RWTQRLLSLDLSQTNITDSGLRCIQQCTSLRYLNLCGCSELRL-- 663
Query: 388 DTGLAALTSLTGLTHLDLFGARITDSGA----AYLRNFK--------NLRSLEICGG--- 432
L L + L L L G ITD Y RN + N+RSL G
Sbjct: 664 ---LHWLKKMYSLRWLHLGGTYITDEETKRYLPYARNLRFLSLSGCSNVRSLTFAGKLLQ 720
Query: 433 ---------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483
G+ D + ++ L L+L ++ D + L+ L L+ LNVS + +
Sbjct: 721 LEYLCLDFTGVADNDLSYLCWCRKLRYLSLQSCAHIRD--VSLLCALPALLELNVSLTAV 778
Query: 484 TSA 486
S+
Sbjct: 779 GSS 781
>gi|290977933|ref|XP_002671691.1| predicted protein [Naegleria gruberi]
gi|284085262|gb|EFC38947.1| predicted protein [Naegleria gruberi]
Length = 203
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 87/174 (50%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
+G + S++ L L + N + E ++ L L +L++ IGDEG +++ L L
Sbjct: 17 EGAKHISQLKQLTFLGVSGNFVGVEGAKYISQLKQLTNLDICFNNIGDEGAKHISELKQL 76
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
K L++ + +G G +++S L ++ +++S+ + ++ ++ + L LN+ I D
Sbjct: 77 KNLKIGNNYIGVEGAKYISQLKHVTKLSISYNNVRVEGVKYISEMKQLTDLNIGENVIGD 136
Query: 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 442
G + L LT L + G I+++GA Y+ K L L I + G ++I
Sbjct: 137 EGAKHIKKLNQLTRLSISGVEISEAGAKYICEMKQLTQLNIKNNNIGKIGKEYI 190
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%)
Query: 287 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 346
FN+I E H+ L L L + +G EG ++ L L L++ +G G +H+
Sbjct: 11 FNDIGVEGAKHISQLKQLTFLGVSGNFVGVEGAKYISQLKQLTNLDICFNNIGDEGAKHI 70
Query: 347 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 406
S L L+++ + I + ++ L + L++ + G+ ++ + LT L++
Sbjct: 71 SELKQLKNLKIGNNYIGVEGAKYISQLKHVTKLSISYNNVRVEGVKYISEMKQLTDLNIG 130
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456
I D GA +++ L L I G +++AG K+I ++ LT LN+ N
Sbjct: 131 ENVIGDEGAKHIKKLNQLTRLSISGVEISEAGAKYICEMKQLTQLNIKNN 180
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Query: 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 418
F I + ++ L L L + + G ++ L LT+LD+ I D GA ++
Sbjct: 11 FNDIGVEGAKHISQLKQLTFLGVSGNFVGVEGAKYISQLKQLTNLDICFNNIGDEGAKHI 70
Query: 419 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478
K L++L+I + G K+I L +T L++S N N+ + ++ IS + L LN+
Sbjct: 71 SELKQLKNLKIGNNYIGVEGAKYISQLKHVTKLSISYN-NVRVEGVKYISEMKQLTDLNI 129
Query: 479 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515
+ I G +H+K L L L++ +++ K +
Sbjct: 130 GENVIGDEGAKHIKKLNQLTRLSISGVEISEAGAKYI 166
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 1/182 (0%)
Query: 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
++ L++LT L + G V +S L L L++ + D+G + S++ LK L +
Sbjct: 22 ISQLKQLTFLGVSGNFVGVEGAKYISQLKQLTNLDICFNNIGDEGAKHISELKQLKNLKI 81
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
G N I E ++ L ++ L++ + EG+ ++ + L L + + +G G +H
Sbjct: 82 GNNYIGVEGAKYISQLKHVTKLSISYNNVRVEGVKYISEMKQLTDLNIGENVIGDEGAKH 141
Query: 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLD 404
+ L L +++S IS+ + + + L LN+ I G + T L L L+
Sbjct: 142 IKKLNQLTRLSISGVEISEAGAKYICEMKQLTQLNIKNNNIGKIGKEYICTELKYLIDLE 201
Query: 405 LF 406
++
Sbjct: 202 VY 203
>gi|223698658|gb|ACN19012.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|194326157|emb|CAQ77237.1| internalin A [Listeria monocytogenes]
gi|290350820|dbj|BAI78331.1| internalin A [Listeria monocytogenes]
gi|290350836|dbj|BAI78339.1| internalin A [Listeria monocytogenes]
gi|298360124|gb|ADI77641.1| internalin A [Listeria monocytogenes]
gi|298360394|gb|ADI77776.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|130774795|gb|ABO32412.1| InlA [Listeria monocytogenes]
gi|150371796|dbj|BAF65687.1| internalin A [Listeria monocytogenes]
gi|150371806|dbj|BAF65692.1| internalin A [Listeria monocytogenes]
gi|150371822|dbj|BAF65700.1| internalin A [Listeria monocytogenes]
gi|194326149|emb|CAQ77233.1| internalin A [Listeria monocytogenes]
gi|298359930|gb|ADI77544.1| internalin A [Listeria monocytogenes]
gi|298360322|gb|ADI77740.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|56797877|emb|CAH04900.1| internalin A [Listeria monocytogenes]
Length = 792
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 123/419 (29%), Positives = 183/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L SNLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANSSNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 196 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 222
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 223 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 279
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 280 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 334
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 335 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 392
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 393 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 451
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L NL
Sbjct: 84 DGLEY---LNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANSSNL 136
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 137 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 191
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 192 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 249
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 250 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 300
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 301 -NISPLAGLTALT 312
>gi|371942132|gb|AEX60878.1| internaline [Listeria monocytogenes]
Length = 790
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGDNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 27/257 (10%)
Query: 246 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305
+D + L +L +N + QL+D + L + + N+I D + L LTNL
Sbjct: 90 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 306 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
L L + I D + L NLT NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQV 197
Query: 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 424
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 425 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 485 SAGLRHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|290971150|ref|XP_002668393.1| predicted protein [Naegleria gruberi]
gi|284081777|gb|EFC35649.1| predicted protein [Naegleria gruberi]
Length = 300
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 3/203 (1%)
Query: 289 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS- 347
+I E + ++ L L SL + I DE + ++ L L L +S +GS G++ +S
Sbjct: 96 KIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIISE 155
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLF 406
L +N+S I + + ++ L L SL + I D G+ L+ L LT+LD+
Sbjct: 156 SFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTNLDIS 215
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466
+I GA Y+ F+ L L I + D ++ I L L +L++S+N ++ + +
Sbjct: 216 RIKIGSGGAQYIGKFEQLTCLNINTCSIDDEVLQSISQLKKLIVLHISEN-EISIEGAKY 274
Query: 467 ISGLTGLVSLNVSNSRITSAGLR 489
IS L L SL +S S I R
Sbjct: 275 ISKLNQLTSLYISESGIRFEQAR 297
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 11/197 (5%)
Query: 225 FLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIGSL 280
++ L++LT L ++G + ++S++ L L L ++ + +G E F+K+ L
Sbjct: 104 YIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIISESFNKLTKL 163
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
+ + + + + LK LT+LE DS IGD G++ L+GL +L L++S ++GS
Sbjct: 164 NISANYIDNVGAKYISQLKQLTSLEIACNDS--IGDAGIIYLSGLEHLTNLDISRIKIGS 221
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
G +++ L +N++ I D L+ ++ L L L++ +I+ G ++ L L
Sbjct: 222 GGAQYIGKFEQLTCLNINTCSIDDEVLQSISQLKKLIVLHISENEISIEGAKYISKLNQL 281
Query: 401 THLDLFGARITDSGAAY 417
T L I++SG +
Sbjct: 282 TSL-----YISESGIRF 293
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 2/213 (0%)
Query: 224 VFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
+ + SL L + + G + + + + L L L + + D+ E +++ L L
Sbjct: 79 ILMKSLTSLCIPYVVGVKIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSL 138
Query: 284 NLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSS 341
+ N I E + + + L LN+ + I + G ++ L L LE++ + +G +
Sbjct: 139 YISGNYIGSEGVKIISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDA 198
Query: 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 401
G+ +LSGL +L ++++S I G + + L LN++ I D L +++ L L
Sbjct: 199 GIIYLSGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNINTCSIDDEVLQSISQLKKLI 258
Query: 402 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434
L + I+ GA Y+ L SL I G+
Sbjct: 259 VLHISENEISIEGAKYISKLNQLTSLYISESGI 291
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RN 420
I S+ + L L SL + I D + ++ L LT L + G I G + +
Sbjct: 97 IDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIISES 156
Query: 421 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 480
F L L I + + G K+I L LT L ++ N ++ D + +SGL L +L++S
Sbjct: 157 FNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTNLDISR 216
Query: 481 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 517
+I S G +++ + L L + +C + D + LQS
Sbjct: 217 IKIGSGGAQYIGKFEQLTCLNINTCSI---DDEVLQS 250
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 29/221 (13%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + + ++ L SL+ + I D +E + L LTSL + N I ++G+K
Sbjct: 94 GVKIDSESVTYIGQLKQLTSLEIQ-GMDIDDEHVESMAELKQLTSL-YISGNYIGSEGVK 151
Query: 126 AFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ N L KL++ + G + L +L SL I + I D+ + LSGL +L +
Sbjct: 152 IISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTN 211
Query: 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA 244
L IS K+ G Y+ ++LT LN+ C +
Sbjct: 212 LDISRIKIGSGGAQYI--------------------------GKFEQLTCLNINTCSIDD 245
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285
L S+S L L L+++ ++S +G + SK+ L L +
Sbjct: 246 EVLQSISQLKKLIVLHISENEISIEGAKYISKLNQLTSLYI 286
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450
L + SLT L + G +I Y+ K L SLEI G + D V+ + +L LT
Sbjct: 78 LILMKSLTSLCIPYVVGVKIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTS 137
Query: 451 LNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502
L +S N + + +++IS L LN+S + I + G +++ LK L SL +
Sbjct: 138 LYISGNY-IGSEGVKIISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEI 189
>gi|112961793|gb|ABI28548.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 123/412 (29%), Positives = 179/412 (43%), Gaps = 86/412 (20%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L LSNLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT 243
L IS +KV+D ++ L KLT NLE T
Sbjct: 107 RLDISSNKVSD-------------------------------ISVLAKLT--NLESLIAT 133
Query: 244 AACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 300
+ ++ LG +L L+LN QL D G + + +L L+L N+I++ L L G
Sbjct: 134 NNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSG 189
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
LT L L L + I + + L GL L LEL++ Q+ + +S L NL + L F
Sbjct: 190 LTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFN 245
Query: 361 GISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGL 400
ISD SL K LA L+++ L+ QI+D L L +LT +
Sbjct: 246 NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 303
Query: 401 THLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
T L L T+ Y N KN+ I ++D G D++
Sbjct: 304 TQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 355
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 41/234 (17%)
Query: 288 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 347
N++TD + LK LT L + +++ I D + L L NL L L + Q+ + + L
Sbjct: 4 NQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLTGLTLFNNQI--TDIDPLK 57
Query: 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407
LTNL + LS ISD + L+GL+SL+ L+ Q+TD L L +LT L LD+
Sbjct: 58 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISS 112
Query: 408 ARITD-SGAAYLRNFK-------------------NLRSLEICGGGLTDAGVKHIKDLSS 447
+++D S A L N + NL L + G L D G + L++
Sbjct: 113 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTN 170
Query: 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 501
LT L+L+ N L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 171 LTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|371942110|gb|AEX60867.1| internaline [Listeria monocytogenes]
gi|371942112|gb|AEX60868.1| internaline [Listeria monocytogenes]
Length = 789
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942126|gb|AEX60875.1| internaline [Listeria monocytogenes]
Length = 790
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|443428838|gb|AGC92218.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698868|gb|ACN19152.1| internalin A [Listeria monocytogenes]
gi|223698898|gb|ACN19172.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|167862032|gb|ACA05715.1| InlA [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|167861900|gb|ACA05649.1| InlA [Listeria monocytogenes]
gi|194326161|emb|CAQ77239.1| internalin A [Listeria monocytogenes]
gi|298360364|gb|ADI77761.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942104|gb|AEX60864.1| internaline [Listeria monocytogenes]
Length = 790
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|294358395|gb|ADE73850.1| InlA [Listeria monocytogenes]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|290975572|ref|XP_002670516.1| predicted protein [Naegleria gruberi]
gi|284084076|gb|EFC37772.1| predicted protein [Naegleria gruberi]
Length = 269
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 2/233 (0%)
Query: 225 FLTSLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282
FL ++ +L+ N L V + + SL + L L+++ ++ D G ++ L
Sbjct: 14 FLGNIIELSFSNQTLTQSGVLSNVIKSLILMKELITLDISYQKIGDAGSNTIGQLIKLTK 73
Query: 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 342
L + NEI+ E + L NL L++ +G EG ++ L L+ L ++ Q+G G
Sbjct: 74 LYVCGNEISSEGAKSIGQLKNLTYLSVRINHLGSEGAKSIGQLEKLRTLYIAHNQIGDEG 133
Query: 343 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 402
++ +S L L ++ + I G + + + L L + I D G ++ L L
Sbjct: 134 IKSISQLKELTTLYTDYNQIGSGGAKSIGEMKQLTELGISENNIEDEGAKSIGQLIYLRK 193
Query: 403 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455
L RI D GA + NL L I + D G HI L L L++++
Sbjct: 194 LSASRCRIGDEGAESISKLINLTKLSINTNPIKDEGALHIIKLPQLKKLDITR 246
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%)
Query: 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324
++S +G + ++ +L L++ N + E + L L +L + IGDEG+ +++
Sbjct: 80 EISSEGAKSIGQLKNLTYLSVRINHLGSEGAKSIGQLEKLRTLYIAHNQIGDEGIKSISQ 139
Query: 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384
L L L Q+GS G + + + L + +S I D + + L L+ L+
Sbjct: 140 LKELTTLYTDYNQIGSGGAKSIGEMKQLTELGISENNIEDEGAKSIGQLIYLRKLSASRC 199
Query: 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444
+I D G +++ L LT L + I D GA ++ L+ L+I + G K + +
Sbjct: 200 RIGDEGAESISKLINLTKLSINTNPIKDEGALHIIKLPQLKKLDITRCSIKSEGKKVLTE 259
Query: 445 L 445
+
Sbjct: 260 M 260
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLS 112
Q L ++ ++ + + D G+ + L +L D+N QI GG + + + LT L
Sbjct: 115 QLEKLRTLYIAHNQIGDEGIKSISQLKELTTLYTDYN---QIGSGGAKSIGEMKQLTELG 171
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
NN I +G K+ LI L KL RC G ++ L+ L L+I N I D
Sbjct: 172 ISENN-IEDEGAKSIGQLIYLRKLSASRCRIGDEGAESISKLINLTKLSIN-TNPIKDEG 229
Query: 173 MKPLSGLTNLKSLQISCSKVTDSG 196
+ L LK L I+ + G
Sbjct: 230 ALHIIKLPQLKKLDITRCSIKSEG 253
>gi|16802477|ref|NP_463962.1| internalin A [Listeria monocytogenes EGD-e]
gi|386049359|ref|YP_005967350.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404282867|ref|YP_006683764.1| internalin A [Listeria monocytogenes SLCC2372]
gi|403399437|sp|P0DJM0.1|INLA_LISMO RecName: Full=Internalin-A; Flags: Precursor
gi|12054782|emb|CAC20628.1| internalin A [Listeria monocytogenes]
gi|16409810|emb|CAC98512.1| Internalin A [Listeria monocytogenes EGD-e]
gi|130774817|gb|ABO32421.1| InlA [Listeria monocytogenes]
gi|130774821|gb|ABO32423.1| InlA [Listeria monocytogenes]
gi|130774823|gb|ABO32424.1| InlA [Listeria monocytogenes]
gi|150371782|dbj|BAF65680.1| internalin A [Listeria monocytogenes]
gi|150371794|dbj|BAF65686.1| internalin A [Listeria monocytogenes]
gi|150371804|dbj|BAF65691.1| internalin A [Listeria monocytogenes]
gi|150371820|dbj|BAF65699.1| internalin A [Listeria monocytogenes]
gi|150371846|dbj|BAF65712.1| internalin A [Listeria monocytogenes]
gi|150371852|dbj|BAF65715.1| internalin A [Listeria monocytogenes]
gi|150371856|dbj|BAF65717.1| internalin A [Listeria monocytogenes]
gi|150371860|dbj|BAF65719.1| internalin A [Listeria monocytogenes]
gi|150371868|dbj|BAF65723.1| internalin A [Listeria monocytogenes]
gi|167861980|gb|ACA05689.1| InlA [Listeria monocytogenes]
gi|194239382|emb|CAQ76831.1| internalin A [Listeria monocytogenes]
gi|298359818|gb|ADI77488.1| internalin A [Listeria monocytogenes]
gi|298359832|gb|ADI77495.1| internalin A [Listeria monocytogenes]
gi|298360054|gb|ADI77606.1| internalin A [Listeria monocytogenes]
gi|298360128|gb|ADI77643.1| internalin A [Listeria monocytogenes]
gi|298360212|gb|ADI77685.1| internalin A [Listeria monocytogenes]
gi|298360216|gb|ADI77687.1| internalin A [Listeria monocytogenes]
gi|298360256|gb|ADI77707.1| internalin A [Listeria monocytogenes]
gi|298360522|gb|ADI77840.1| internalin A [Listeria monocytogenes]
gi|346423205|gb|AEO24730.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404232369|emb|CBY53772.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2372]
Length = 800
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|371942096|gb|AEX60860.1| internaline [Listeria monocytogenes]
Length = 790
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 184/419 (43%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 204 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 230
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 231 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 287
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 288 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 342
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 343 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 400
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T+ Y N KN+ I ++D G D++
Sbjct: 401 LANLTRITQLGLNDQEWTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 92 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 144
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 145 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 199
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 200 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 257
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 258 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 308
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 309 -NISPLAGLTALT 320
>gi|223698976|gb|ACN19224.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 185/419 (44%), Gaps = 86/419 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLN 236
+ LT L+ L IS +KV+D ++ L KLT N
Sbjct: 119 ANLTTLERLDISSNKVSD-------------------------------ISVLAKLT--N 145
Query: 237 LEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
LE T + ++ LG +L L+LN QL D G + + +L L+L N+I++
Sbjct: 146 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN- 202
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353
L L GLT L L L + I + + L GL L LEL++ Q+ + +S L NL
Sbjct: 203 -LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLT 257
Query: 354 SINLSFTGISD----GSLRK----------------LAGLSSLKSLNLDARQITDTGLAA 393
+ L F ISD SL K LA L+++ L+ QI+D L
Sbjct: 258 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTP 315
Query: 394 LTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
L +LT +T L L T++ Y N KN+ I ++D G D++
Sbjct: 316 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 374
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 7 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 59
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 60 TGLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 114
Query: 389 TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLE 428
L L +LT L LD+ +++D S A L N + NL L
Sbjct: 115 --LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 172
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 173 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 223
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 224 -NISPLAGLTALT 235
>gi|290986522|ref|XP_002675973.1| predicted protein [Naegleria gruberi]
gi|284089572|gb|EFC43229.1| predicted protein [Naegleria gruberi]
Length = 234
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403
+ +S + L S+N+ I D + + + L SL++ QI G +T + LT L
Sbjct: 89 KFISEMKQLTSLNIGCNRIGDEGAKSITEMKQLTSLDISNNQIGIEGAKFITEMKQLTLL 148
Query: 404 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463
++ I D GA ++ K L SL+I + D G K I ++ LTLLN+S N + ++
Sbjct: 149 NISSNEIDDEGAKFISEMKQLTSLDISNNQIGDEGAKFISEMKQLTLLNISSN-EIDNEG 207
Query: 464 LELISGLTGLVSLNVSNSRITSA 486
+ IS + L SL++S ++I A
Sbjct: 208 AKFISEMKQLTSLDISYNQIGHA 230
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
+ L SLN+ IGDEG ++T + L L++S+ Q+G G + ++ + L +N+S
Sbjct: 94 MKQLTSLNIGCNRIGDEGAKSITEMKQLTSLDISNNQIGIEGAKFITEMKQLTLLNISSN 153
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 420
I D + ++ + L SL++ QI D G ++ + LT L++ I + GA ++
Sbjct: 154 EIDDEGAKFISEMKQLTSLDISNNQIGDEGAKFISEMKQLTLLNISSNEIDNEGAKFISE 213
Query: 421 FKNLRSLEICGGGLTDAGVK 440
K L SL+I + A K
Sbjct: 214 MKQLTSLDISYNQIGHAKSK 233
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 225 FLTSLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 283
F++ +++LT LN+ GC + S++ + L L+++ Q+ +G + +++ L +L
Sbjct: 90 FISEMKQLTSLNI-GCNRIGDEGAKSITEMKQLTSLDISNNQIGIEGAKFITEMKQLTLL 148
Query: 284 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 343
N+ NEI DE + + L SL++ + IGDEG ++ + L L +S ++ + G
Sbjct: 149 NISSNEIDDEGAKFISEMKQLTSLDISNNQIGDEGAKFISEMKQLTLLNISSNEIDNEGA 208
Query: 344 RHLSGLTNLESINLSFTGI 362
+ +S + L S+++S+ I
Sbjct: 209 KFISEMKQLTSLDISYNQI 227
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 70/137 (51%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
+S + L LN+ ++ D+G + +++ L L++ N+I E + + L LN+
Sbjct: 91 ISEMKQLTSLNIGCNRIGDEGAKSITEMKQLTSLDISNNQIGIEGAKFITEMKQLTLLNI 150
Query: 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369
S I DEG ++ + L L++S+ Q+G G + +S + L +N+S I + +
Sbjct: 151 SSNEIDDEGAKFISEMKQLTSLDISNNQIGDEGAKFISEMKQLTLLNISSNEIDNEGAKF 210
Query: 370 LAGLSSLKSLNLDARQI 386
++ + L SL++ QI
Sbjct: 211 ISEMKQLTSLDISYNQI 227
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 27/162 (16%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213
+ +L SLNI CN I D K ++ + L SL IS +++ GI K
Sbjct: 94 MKQLTSLNIG-CNRIGDEGAKSITEMKQLTSLDISNNQI---GIEGAK------------ 137
Query: 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 273
F+T +++LTLLN+ + +S + L L+++ Q+ D+G +
Sbjct: 138 -----------FITEMKQLTLLNISSNEIDDEGAKFISEMKQLTSLDISNNQIGDEGAKF 186
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315
S++ L +LN+ NEI +E + + L SL++ IG
Sbjct: 187 ISEMKQLTLLNISSNEIDNEGAKFISEMKQLTSLDISYNQIG 228
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLT 233
K +S + L SL I C+++ D G + T +++LT
Sbjct: 89 KFISEMKQLTSLNIGCNRIGDEGAKSI--------------------------TEMKQLT 122
Query: 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293
L++ + ++ + L LN++ ++ D+G + S++ L L++ N+I DE
Sbjct: 123 SLDISNNQIGIEGAKFITEMKQLTLLNISSNEIDDEGAKFISEMKQLTSLDISNNQIGDE 182
Query: 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339
+ + L LN+ S I +EG ++ + L L++S Q+G
Sbjct: 183 GAKFISEMKQLTLLNISSNEIDNEGAKFISEMKQLTSLDISYNQIG 228
>gi|22347572|gb|AAM95931.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 174/402 (43%), Gaps = 84/402 (20%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 57 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 110
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 111 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 164
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253
D ++ L KLT NLE T + ++ L
Sbjct: 165 D-------------------------------ISVLAKLT--NLESLIATNNQISDITPL 191
Query: 254 G---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
G +L L+LN QL D G + + +L L+L N+I++ L L GLT L L L
Sbjct: 192 GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 247
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GS 366
+ I + + L GL L LEL++ Q+ + +S L NL + L F ISD S
Sbjct: 248 ANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSS 303
Query: 367 LRK----------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410
L K LA L+++ L+ QI+D L L +LT +T L L
Sbjct: 304 LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAW 361
Query: 411 TDSGAAYLRN------FKNLRSLEICGGGLTDAGVKHIKDLS 446
T+ Y N KN+ I ++D G D++
Sbjct: 362 TNPPVNYKTNVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 403
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 44/253 (17%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD----EGLVNLTG 324
DG E + +L +N GFN++TD + LK LT L + +++ I D L NLTG
Sbjct: 36 DGLEY---LNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTG 90
Query: 325 LC----------------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L NL LELS + S + LSGLTNL+ LSF G L+
Sbjct: 91 LTLFNNQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVTDLK 145
Query: 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428
LA L++L+ L++ + +++D ++ L LT L L +I+D L NL L
Sbjct: 146 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELS 201
Query: 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488
+ G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 LNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS---- 252
Query: 489 RHLKPLKNLRSLT 501
++ PL L +LT
Sbjct: 253 -NISPLAGLTALT 264
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,322,272,705
Number of Sequences: 23463169
Number of extensions: 287827436
Number of successful extensions: 930577
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4957
Number of HSP's successfully gapped in prelim test: 16821
Number of HSP's that attempted gapping in prelim test: 761044
Number of HSP's gapped (non-prelim): 95973
length of query: 529
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 382
effective length of database: 8,910,109,524
effective search space: 3403661838168
effective search space used: 3403661838168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)