BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009672
(529 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 134/290 (46%), Gaps = 57/290 (19%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 96 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
GL L+ LN + N +TD +KPL+ LT L+ L IS +KV+D
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSD------------------ 186
Query: 213 CSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDD 269
S++ +L L E T + ++ LG +L L+LN QL D
Sbjct: 187 ISVLAKLTNL---------------ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 231
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + + +L L+L N+I++ L L GLT L L L + I + + L GL L
Sbjct: 232 GT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 285
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 286 NLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 331
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
A + L+ L +L L L Q++D + + +L L L N I+D + L GLT+L
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSL 153
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
+ LN + + L NLT L+ L++S +V S + L+ LTNLES+ + ISD
Sbjct: 154 QQLNFGNQVTDLKPLANLTT---LERLDISSNKV--SDISVLAKLTNLESLIATNNQISD 208
Query: 365 GSLRKLAGLSSLKSLNLDARQI 386
+ L L++L L+L+ Q+
Sbjct: 209 --ITPLGILTNLDELSLNGNQL 228
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 39/252 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLV 134
LK +NL +L+ + IS + + L+ LT+L NN I+ + L NL
Sbjct: 165 LKPLANLTTLE---RLDISSNKVSDISVLAKLTNLESLIATNNQIS--DITPLGILTNLD 219
Query: 135 KLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L L + G L +L L L+ N N I S++ PLSGLT L L++ ++++
Sbjct: 220 ELSLNGNQLKDIGTLASLTNLTDLDLAN----NQI--SNLAPLSGLTKLTELKLGANQIS 273
Query: 194 D----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDS 249
+ +G+ L L ++ S I L L + PV+ S
Sbjct: 274 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYL----TLYFNNISDISPVS-----S 324
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L+ L LF+ N ++SD + + ++ L+ G N+I+D L L LT + L
Sbjct: 325 LTKLQRLFFYN---NKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL-- 375
Query: 310 DSCGIGDEGLVN 321
G+ D+ N
Sbjct: 376 ---GLNDQAWTN 384
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+++++ LE + +SNL +L++ + + + + +L KL +R + + ++
Sbjct: 287 LELNENQLEDISPISNLKNLTYL---TLYFNNISDISPVSSLTKL--QRLFFYNNKVSDV 341
Query: 152 KGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
L L NI W + + SD+ PL+ LT + L ++ T++ + Y +SI + +
Sbjct: 342 SSLANLT--NINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 399
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 134/290 (46%), Gaps = 57/290 (19%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 96 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
GL L+ LN + N +TD +KPL+ LT L+ L IS +KV+D
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSD------------------ 186
Query: 213 CSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDD 269
S++ +L L E T + ++ LG +L L+LN QL D
Sbjct: 187 ISVLAKLTNL---------------ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 231
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + + +L L+L N+I++ L L GLT L L L + I + + L GL L
Sbjct: 232 GT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 285
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 286 NLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 331
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 28/298 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK+ +NL L+ + ISD + L GL++L L+F N +T +K A L L +L
Sbjct: 125 LKNLTNLNRLELS-SNTISD--ISALSGLTSLQQLNFG--NQVT--DLKPLANLTTLERL 177
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D+ ++ V L L LESL I N I SD+ PL LTNL L ++ +++ D
Sbjct: 178 DIS-SNKVSDISV-LAKLTNLESL-IATNNQI--SDITPLGILTNLDELSLNGNQLKD-- 230
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALGSL 256
I L L+ + + + + I L L + + L+ L +L
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ------ISNISPLAGLTAL 284
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 316
L LN QL D S + +L L L FN I+D + + LT L+ L + + D
Sbjct: 285 TNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFSNNKVSD 340
Query: 317 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
+ +L L N+ L Q+ S L L+ LT + + L+ ++ + A +S
Sbjct: 341 --VSSLANLTNINWLSAGHNQI--SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 394
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 304
A + L+ L +L L L Q++D + + +L L L N I+D + L GLT+L
Sbjct: 98 ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSL 153
Query: 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 364
+ LN + + L NLT L+ L++S +V S + L+ LTNLES+ + ISD
Sbjct: 154 QQLNFGNQVTDLKPLANLTT---LERLDISSNKV--SDISVLAKLTNLESLIATNNQISD 208
Query: 365 GSLRKLAGLSSLKSLNLDARQI 386
+ L L++L L+L+ Q+
Sbjct: 209 --ITPLGILTNLDELSLNGNQL 228
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L S +KV+D
Sbjct: 287 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFSNNKVSD 340
Query: 195 -SGIAYLKGLS 204
S +A L ++
Sbjct: 341 VSSLANLTNIN 351
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 132/295 (44%), Gaps = 43/295 (14%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSI 205
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD + + L+ L I
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 180
Query: 206 SSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFYLNLN 262
SS S++ +L L E T + ++ LG +L L+LN
Sbjct: 181 SSNKVSDISVLAKLTNL---------------ESLIATNNQISDITPLGILTNLDELSLN 225
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
QL D G + + +L L+L N+I++ L L GLT L L L + I + + L
Sbjct: 226 GNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPL 279
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRKLAGL 373
GL L LEL++ Q+ + +S L NL + L F ISD SL KL L
Sbjct: 280 AGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+++++ LE + +SNL +L++ + + + + +L KL +R + + ++
Sbjct: 288 LELNENQLEDISPISNLKNLTYL---TLYFNNISDISPVSSLTKL--QRLFFYNNKVSDV 342
Query: 152 KGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
L L NI W + + SD+ PL+ LT + L ++ T++ + Y +SI + +
Sbjct: 343 SSLANLT--NINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 400
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 132/295 (44%), Gaps = 43/295 (14%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSI 205
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD + + L+ L I
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 206 SSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFYLNLN 262
SS S++ +L L E T + ++ LG +L L+LN
Sbjct: 181 SSNKVSDISVLAKLTNL---------------ESLIATNNQISDITPLGILTNLDELSLN 225
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
QL D G + + +L L+L N+I++ L L GLT L L L + I + + L
Sbjct: 226 GNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPL 279
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRKLAGL 373
GL L LEL++ Q+ + +S L NL + L F ISD SL KL L
Sbjct: 280 AGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+++++ LE + +SNL +L++ + + + + +L KL +R + + ++
Sbjct: 288 LELNENQLEDISPISNLKNLTYL---TLYFNNISDISPVSSLTKL--QRLFFYNNKVSDV 342
Query: 152 KGLMKLESLNIKWC----NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISS 207
L L NI W N I SD+ PL+ LT + L ++ T++ + Y +SI +
Sbjct: 343 SSLANLT--NINWLSAGHNQI--SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Query: 208 VI 209
+
Sbjct: 399 TV 400
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 132/295 (44%), Gaps = 43/295 (14%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLSI 205
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD + + L+ L I
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 206 SSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFYLNLN 262
SS S++ +L L E T + ++ LG +L L+LN
Sbjct: 181 SSNKVSDISVLAKLTNL---------------ESLIATNNQISDITPLGILTNLDELSLN 225
Query: 263 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 322
QL D G + + +L L+L N+I++ L L GLT L L L + I + + L
Sbjct: 226 GNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPL 279
Query: 323 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRKLAGL 373
GL L LEL++ Q+ + +S L NL + L F ISD SL KL L
Sbjct: 280 AGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L S +KV+D
Sbjct: 288 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFSNNKVSD 341
Query: 195 -SGIAYLKGLS 204
S +A L ++
Sbjct: 342 VSSLANLTNIN 352
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 133/290 (45%), Gaps = 57/290 (19%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 101 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 153
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D
Sbjct: 154 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSD------------------ 191
Query: 213 CSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDD 269
S++ +L L E T + ++ LG +L L+LN QL D
Sbjct: 192 ISVLAKLTNL---------------ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 236
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + + +L L+L N+I++ L L GLT L L L + I + + L GL L
Sbjct: 237 GT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 290
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 291 NLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 336
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 38/171 (22%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 62 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 114
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXX 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+
Sbjct: 115 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS-------- 162
Query: 389 XXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
FG ++TD L N L L+I ++D V
Sbjct: 163 -----------------FGNQVTD--LKPLANLTTLERLDISSNKVSDISV 194
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 39/252 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLV 134
LK +NL +L+ + IS + + L+ LT+L NN I+ + L NL
Sbjct: 170 LKPLANLTTLE---RLDISSNKVSDISVLAKLTNLESLIATNNQIS--DITPLGILTNLD 224
Query: 135 KLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L L + G L +L L L+ N N I S++ PLSGLT L L++ ++++
Sbjct: 225 ELSLNGNQLKDIGTLASLTNLTDLDLAN----NQI--SNLAPLSGLTKLTELKLGANQIS 278
Query: 194 D----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDS 249
+ +G+ L L ++ S I L L + PV+ S
Sbjct: 279 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYL----TLYFNNISDISPVS-----S 329
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L+ L LF+ N ++SD + + ++ L+ G N+I+D L L LT + L
Sbjct: 330 LTKLQRLFFYN---NKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL-- 380
Query: 310 DSCGIGDEGLVN 321
G+ D+ N
Sbjct: 381 ---GLNDQAWTN 389
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+++++ LE + +SNL +L++ + + + + +L KL +R + + ++
Sbjct: 292 LELNENQLEDISPISNLKNLTYL---TLYFNNISDISPVSSLTKL--QRLFFYNNKVSDV 346
Query: 152 KGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209
L L NI W + + SD+ PL+ LT + L ++ T++ + Y +SI + +
Sbjct: 347 SSLANLT--NINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 133/290 (45%), Gaps = 57/290 (19%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 100 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D
Sbjct: 153 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSD------------------ 190
Query: 213 CSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALG---SLFYLNLNRCQLSDD 269
S++ +L L E T + ++ LG +L L+LN QL D
Sbjct: 191 ISVLAKLTNL---------------ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 235
Query: 270 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329
G + + +L L+L N+I++ L L GLT L L L + I + + L GL L
Sbjct: 236 GT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 289
Query: 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
LEL++ Q+ + +S L NL + L F ISD + ++ L+ L+ L
Sbjct: 290 NLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 335
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 38/171 (22%)
Query: 269 DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328
DG E + +L +N N++TD + LK LT L + +++ I D + L L NL
Sbjct: 61 DGVEY---LNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANLTNL 113
Query: 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXX 388
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+
Sbjct: 114 TGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS-------- 161
Query: 389 XXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439
FG ++TD L N L L+I ++D V
Sbjct: 162 -----------------FGNQVTD--LKPLANLTTLERLDISSNKVSDISV 193
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 39/252 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLV 134
LK +NL +L+ + IS + + L+ LT+L NN I+ + L NL
Sbjct: 169 LKPLANLTTLE---RLDISSNKVSDISVLAKLTNLESLIATNNQIS--DITPLGILTNLD 223
Query: 135 KLDLE-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L L + G L +L L L+ N N I S++ PLSGLT L L++ ++++
Sbjct: 224 ELSLNGNQLKDIGTLASLTNLTDLDLAN----NQI--SNLAPLSGLTKLTELKLGANQIS 277
Query: 194 D----SGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDS 249
+ +G+ L L ++ S I L L + PV+ S
Sbjct: 278 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYL----TLYFNNISDISPVS-----S 328
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
L+ L LF+ N ++SD + + ++ L+ G N+I+D L L LT + L
Sbjct: 329 LTKLQRLFFAN---NKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL-- 379
Query: 310 DSCGIGDEGLVN 321
G+ D+ N
Sbjct: 380 ---GLNDQAWTN 388
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 138/312 (44%), Gaps = 39/312 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
+NL+ L+ N QI+D + LSNL L+ + N IT + A L NL +L L
Sbjct: 66 TNLEYLNLNGN-QITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---- 194
+ L L K SLN+ + + SD+ PLS T L L ++ SKV D
Sbjct: 118 NEDNI--SDISPLANLTKXYSLNLGANHNL--SDLSPLSNXTGLNYLTVTESKVKDVTPI 173
Query: 195 SGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALG 254
+ + L LS++ S + L LH F + PV
Sbjct: 174 ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT----DITPVANXT-------- 221
Query: 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314
L L + +++D + + L L +G N+I+D V K LT L+ LN+ S I
Sbjct: 222 RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAV--KDLTKLKXLNVGSNQI 277
Query: 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374
D ++N L L L L++ Q+G+ + GLTNL ++ LS I+D +R LA LS
Sbjct: 278 SDISVLN--NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD--IRPLASLS 333
Query: 375 SLKSLNLDARQI 386
S + A Q+
Sbjct: 334 KXDSADF-ANQV 344
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 114/265 (43%), Gaps = 36/265 (13%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD I+
Sbjct: 54 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD--IS 104
Query: 199 YLKGLS--------------ISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTA 244
L+ L+ IS + + + L H VT
Sbjct: 105 ALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTE 164
Query: 245 ACLDSLSALGS---LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 301
+ + ++ + + L+ L+LN Q+ D + + SL N+ITD + +
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--ITPVANX 220
Query: 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 361
T L SL + + I D L L L L LE+ Q+ S + + LT L+ +N+
Sbjct: 221 TRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQ 276
Query: 362 ISDGSLRKLAGLSSLKSLNLDARQI 386
ISD S+ L LS L SL L+ Q+
Sbjct: 277 ISDISV--LNNLSQLNSLFLNNNQL 299
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 57/216 (26%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+KD + + +L + + ++ +E + L++LTSL + F +N +
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHY-------------FTAYVNQIT- 212
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ + +L SL I N IT D+ PL+ L+ L L+I ++++D
Sbjct: 213 ----------DITPVANXTRLNSLKI-GNNKIT--DLSPLANLSQLTWLEIGTNQISD-- 257
Query: 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALGSL 256
I +K L+ +L L+V + L++LS L SL
Sbjct: 258 INAVKDLT-------------KLKXLNVGSNQISDI------------SVLNNLSQLNSL 292
Query: 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
F LN QL ++ E + +L L L N ITD
Sbjct: 293 F---LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD 325
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 274 FSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
F+++ SL+ L+LG + +GL NL LNL C + D + NLT L L+ LE
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--IPNLTALVRLEELE 184
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
LS ++ GLT+L + L ++ L SL+ LNL
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 127 LVHL---PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 179
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 180 LYLSKNHISD--LRALAGLKNLDVLELFSQE 208
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 25/85 (29%)
Query: 145 HGGLVNLKGLM---KLESLNIKWCNCITD--------------------SDMKPLSGLTN 181
H G+ ++ GL+ +LESL + N ITD SD+ PL+GLT
Sbjct: 118 HNGISDINGLVHLPQLESLYLG-NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 176
Query: 182 LKSLQISCSKVTD-SGIAYLKGLSI 205
L++L +S + ++D +A LK L +
Sbjct: 177 LQNLYLSKNHISDLRALAGLKNLDV 201
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIH 145
N+ I G E+L L L + RNN I + AF + +L++LDL ++ I
Sbjct: 133 NWLTVIPSGAFEYLSKLREL----WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205
G +GL L+ LN+ CN DM L+ L L+ L++S + + GLS
Sbjct: 189 EGA--FEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 206 SSVIFILCSMI 216
++++ S +
Sbjct: 244 LKKLWVMNSQV 254
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVH 297
+ + + LS L L+ L + F+++ SL L+LG I++
Sbjct: 138 IPSGAFEYLSKLRELW---LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-- 192
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
+GL NL+ LNL C I D + NLT L L+ LE+S GL++L+ + +
Sbjct: 193 -EGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 358 SFTGISDGSLRKLAGLSSLKSLNL 381
+ +S GL+SL LNL
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNL 273
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 130 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQE 211
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 145 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 182
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180
Query: 183 KSLQISCSKVTD-SGIAYLKGLSI 205
++L +S + ++D +A LK L +
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDV 204
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 128 LVHL---PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 180
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 181 LYLSKNHISD--LRALAGLKNLDVLELFSQE 209
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 145 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 182
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 178
Query: 183 KSLQISCSKVTD-SGIAYLKGLSI 205
++L +S + ++D +A LK L +
Sbjct: 179 QNLYLSKNHISDLRALAGLKNLDV 202
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 274 FSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332
F+++ SL+ L+LG + +GL NL LNL C + D + NLT L L+ LE
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--IPNLTALVRLEELE 184
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
LS ++ GLT+L + L ++ L SL+ LNL
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 150 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 202
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 203 LYLSKNHISD--LRALAGLKNLDVLELFSQE 231
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 145 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 182
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 141 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 200
Query: 183 KSLQISCSKVTD-SGIAYLKGLSI 205
++L +S + ++D +A LK L +
Sbjct: 201 QNLYLSKNHISDLRALAGLKNLDV 224
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 130 LVHL---PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQE 211
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 145 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 182
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180
Query: 183 KSLQISCSKVTD-SGIAYLKGLSI 205
++L +S + ++D +A LK L +
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDV 204
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 125 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 177
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 178 LYLSKNHISD--LRALAGLKNLDVLELFSQE 206
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 145 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 182
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 175
Query: 183 KSLQISCSKVTD-SGIAYLKGLSI 205
++L +S + ++D +A LK L +
Sbjct: 176 QNLYLSKNHISDLRALAGLKNLDV 199
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 127/340 (37%), Gaps = 77/340 (22%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+NL LD ++ + D G L +L LS NN I ++F GL NL L L+
Sbjct: 247 WTNLTQLDLSYN-NLHDVGNGSFSYLPSLRYLSLEYNN-IQRLSPRSFYGLSNLRYLSLK 304
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV-TDSGIA 198
R V+L ++ + +W +K L L N+ I +K T +G+
Sbjct: 305 RAFTKQS--VSLASHPNIDDFSFQW--------LKYLEYL-NMDDNNIPSTKSNTFTGLV 353
Query: 199 YLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFY 258
LK LS+S L ++ F SL A L
Sbjct: 354 SLKYLSLSKTFTSLQTLTNETFV---------------------------SL-AHSPLLT 385
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNL--------ESLNL 309
LNL + +S FS +G L++L+LG NEI + +GL N+ + L L
Sbjct: 386 LNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQL 445
Query: 310 DSCGIG------------------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 351
+ D L NL L+LS+ + + L GL N
Sbjct: 446 STSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLEN 505
Query: 352 LESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 383
LE ++ ++ G + L GLS L LNL++
Sbjct: 506 LEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLES 545
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS---CGIG 315
LNL QL F++ L +L+ GFN I+ + L L+ LNL I
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 367
D+ V T L L + S ++ S+ ++ L L+ LS G+S L
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLD---LSHNGLSSTKL 138
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 145 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 182
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 198
Query: 183 KSLQISCSKVTD-SGIAYLKGLSI 205
++L +S + ++D +A LK L +
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDV 222
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 145 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 182
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 198
Query: 183 KSLQISCSKVTD-SGIAYLKGLSI 205
++L +S + ++D +A LK L +
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
LVHL LESL L + I D + L+ L L L L D Q+ S + L+GLT L++
Sbjct: 148 LVHLP---QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 200
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385
+ LS ISD LR LAGL +L L L +++
Sbjct: 201 LYLSKNHISD--LRALAGLKNLDVLELFSQE 229
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 145 HGGLVNLKGLMKLESLNIKWC--NCITD--------------------SDMKPLSGLTNL 182
H G+ ++ GL+ L L + N ITD SD+ PL+GLT L
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 198
Query: 183 KSLQISCSKVTD-SGIAYLKGLSI 205
++L +S + ++D +A LK L +
Sbjct: 199 QNLYLSKNHISDLRALAGLKNLDV 222
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L+ L+ +T L N + + A AGL ++ LDL T+I + L
Sbjct: 74 QITD--LAPLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDL-TSTQITD-VTPLA 126
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
GL L+ L + N IT+ + PL+GLTNL+ L I ++V+D
Sbjct: 127 GLSNLQVLYLD-LNQITN--ISPLAGLTNLQYLSIGNAQVSD 165
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 286 GFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGL 343
G + +TD L G+T L + G G + + L NL LEL D Q+ + L
Sbjct: 27 GKSNVTDTVTQADLDGITTLSAF-----GTGVTTIEGVQYLNNLIGLELKDNQITDLAPL 81
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
++L+ +T LE +G ++ +AGL S+K+L+L + QI
Sbjct: 82 KNLTKITELE-----LSGNPLKNVSAIAGLQSIKTLDLTSTQI 119
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL-- 133
+ D + L++L +++S L+++ ++ L S+ + + AGL NL
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+ LDL + T I L GL L+ L+I SD+ PL+ L+ L +L+ +K++
Sbjct: 134 LYLDLNQITNISP----LAGLTNLQYLSIGNAQV---SDLTPLANLSKLTTLKADDNKIS 186
Query: 194 D-SGIAYLKGL 203
D S +A L L
Sbjct: 187 DISPLASLPNL 197
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 116/306 (37%), Gaps = 73/306 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXX 232
M+ + + +KS + G+ LK LS+S+ L ++ F
Sbjct: 336 MED-NDIPGIKSNMFT-------GLINLKYLSLSNSFTSLRTLTNETFV----------- 376
Query: 233 XXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
SL A L LNL + ++S + FS +G L+VL+LG NEI
Sbjct: 377 ----------------SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419
Query: 293 ECL-VHLKGLTN------------------------LESLNLDSCGIG--DEGLVNLTGL 325
E +GL N L+ L L + D L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLK 377
NL L+LS+ + + L GL LE ++L ++ G + L GLS L
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539
Query: 378 SLNLDA 383
LNL++
Sbjct: 540 ILNLES 545
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 116/306 (37%), Gaps = 73/306 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXX 232
M+ + + +KS + G+ LK LS+S+ L ++ F
Sbjct: 341 MED-NDIPGIKSNMFT-------GLINLKYLSLSNSFTSLRTLTNETFV----------- 381
Query: 233 XXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
SL A L LNL + ++S + FS +G L+VL+LG NEI
Sbjct: 382 ----------------SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 424
Query: 293 ECL-VHLKGLTN------------------------LESLNLDSCGIG--DEGLVNLTGL 325
E +GL N L+ L L + D L
Sbjct: 425 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 484
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLK 377
NL L+LS+ + + L GL LE ++L ++ G + L GLS L
Sbjct: 485 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 544
Query: 378 SLNLDA 383
LNL++
Sbjct: 545 ILNLES 550
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307
D ++ L L LN +S F+ + +L+ L L N + L GL+NL L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---SFTGISD 364
++ I L NLK LE+ D + R SGL +LE + L + T I
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 365 GSLRKLAGLS--SLKSLNLDA 383
+L L GL L+ LN++A
Sbjct: 170 EALSHLHGLIVLRLRHLNINA 190
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 104/286 (36%), Gaps = 60/286 (20%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L NL +L R +N + + F GL NL KLD+ +V L M
Sbjct: 79 LFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLDISE-----NKIVILLDYM--------- 123
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHV 224
L NLKSL++ D+ + Y+ + S +
Sbjct: 124 -----------FQDLYNLKSLEVG-----DNDLVYISHRAFSGL---------------- 151
Query: 225 FXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284
E C +T+ ++LS L L L L ++ F ++ LKVL
Sbjct: 152 -----NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 285 LG----FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340
+ + +T CL L NL SL++ C + + + L L+ L LS + +
Sbjct: 207 ISHWPYLDTMTPNCLYGL----NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L L L+ I L ++ GL+ L+ LN+ Q+
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 116/306 (37%), Gaps = 73/306 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXX 232
M+ + + +KS + G+ LK LS+S+ L ++ F
Sbjct: 346 MED-NDIPGIKSNMFT-------GLINLKYLSLSNSFTSLRTLTNETFV----------- 386
Query: 233 XXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292
SL A L LNL + ++S + FS +G L+VL+LG NEI
Sbjct: 387 ----------------SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 429
Query: 293 ECL-VHLKGLTN------------------------LESLNLDSCGIG--DEGLVNLTGL 325
E +GL N L+ L L + D L
Sbjct: 430 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 489
Query: 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLK 377
NL L+LS+ + + L GL LE ++L ++ G + L GLS L
Sbjct: 490 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 549
Query: 378 SLNLDA 383
LNL++
Sbjct: 550 ILNLES 555
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L+ L+ +T L N + + A AGL ++ LDL T+I + L
Sbjct: 80 QITD--LTPLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDL-TSTQITD-VTPLA 132
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
GL L+ L + N IT+ + PL+GLTNL+ L I ++V D
Sbjct: 133 GLSNLQVLYLDL-NQITN--ISPLAGLTNLQYLSIGNNQVND 171
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 286 GFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGL 343
G + +TD L G+ L + N I EG+ L NL LEL D Q+ + L
Sbjct: 33 GKSNVTDAVTQADLDGIATLSAFNTGVTTI--EGI---QYLNNLIGLELKDNQITDLTPL 87
Query: 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
++L+ +T LE +G ++ +AGL S+K+L+L + QI
Sbjct: 88 KNLTKITELE-----LSGNPLKNVSAIAGLQSIKTLDLTSTQI 125
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
F + LKVLNL +N+I GL NL+ LNL +G+ N GL + ++L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+ + L L++++L D +L + + S+ + L ++
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDL-----RDNALTTIHFIPSIPDIFLSGNKL 393
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 274 FSKIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
F+ + L+ L+L N D H GL L +L+LD CG+ + G GL L+
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L L D + + L NL + L IS R GL SL L L ++
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 274 FSKIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330
F+ + L+ L+L N D H GL L +L+LD CG+ + G GL L+
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
L L D + + L NL + L IS R GL SL L L ++
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 124/283 (43%), Gaps = 65/283 (22%)
Query: 259 LNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECL-VHLKGLTN----LESLNL 309
+ L+ C L++ C+ S +L L+L NE+ D + + L+GL N ++ L+L
Sbjct: 29 VRLDDCGLTEVRCKDISSAVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQKLSL 88
Query: 310 DSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHL-SGLTN----LESINLSFT 360
+CG+ + G L G L L+ L L+D +G +GL+ L GL + LE + L +
Sbjct: 89 QNCGLTEAGCGILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYC 148
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDLF--GARITDSGAAYL 418
++ S LA + +K+ D +++ DL G RI G L
Sbjct: 149 NLTATSCEPLASVLRVKA---DFKELVLSNN------------DLHEPGVRILCQG---L 190
Query: 419 RNFK-NLRSLEICGGGLTDAGVKHIKDXXXXXXXXXXXXXXXTDKTLELISGLTGLVSLN 477
++ L SL++ G+T A K + D +++ L L+
Sbjct: 191 KDSACQLESLKLENCGITAANCKDLCD---------------------VVASKASLQELD 229
Query: 478 VSNSRITSAGLRH-----LKPLKNLRSLTLESCKVTANDIKRL 515
+S++++ +AG+ L P LR+L L C +TA K L
Sbjct: 230 LSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDL 272
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 242 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE---- 293
+ A C L L L L C ++ +GC+ ++ SLK L+L NE+ DE
Sbjct: 240 IAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGARL 299
Query: 294 -CLVHLKGLTNLESLNLDSCGI 314
C L+ LESL + +C +
Sbjct: 300 LCESLLEPGCQLESLWIKTCSL 321
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 255 SLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL---GFNEITDECLVHLKGLTNLESLNLD 310
SL Y+ L ++D G E I L + N+ +N I+ GL+NLE L +
Sbjct: 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPIS--------GLSNLERLRIX 96
Query: 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRK 369
+ + + NL+GL +L L++S + S L ++ L + SI+LS+ G I+D +
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IXP 154
Query: 370 LAGLSSLKSLNL 381
L L LKSLN+
Sbjct: 155 LKTLPELKSLNI 166
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+ GLSNL L + +T+ + +GL +L LD+ L + L K+ S++
Sbjct: 84 ISGLSNLERLRIXGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + IT D+ PL L LKSL I V D
Sbjct: 143 LSYNGAIT--DIXPLKTLPELKSLNIQFDGVHD 173
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLE-SLNIK--WCNCITDSDMKPLSGLTNLKSLQIS 188
N+ + T I +N+ L +E + NIK N I ++ P+SGL+NL+ L+I
Sbjct: 37 NITEAQXNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIX 96
Query: 189 CSKVTDSGIA 198
VT I
Sbjct: 97 GKDVTSDKIP 106
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%)
Query: 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360
T+LE L L I GL +L L LS +GS R L LE ++LS+
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 361 GISDGSLRKLAGLSSLKSLNLDARQI 386
I + GL +LK L LD Q+
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQL 383
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333
FS L+ L L NEI GLT+L LNL +G L L+ L+L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 334 SDTQVGSSGLRHLSGLTNLESINL---SFTGISDGSLRKLAGLSSL 376
S + + G + GL NL+ + L + DG +L L +
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGIAYL 200
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI L
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQI 386
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L +L+ L+ I
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122
Query: 387 XXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSL 427
+TD G L +F+NL+ L
Sbjct: 123 SC-------------------GNVTDKGIIALHHFRNLKYL 144
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 290 ITDECLVHLKGLTNLESLNLD----SCG-IGDEGLVNLTGLCNLKCLELSD 335
I D CL L L NL+ L+ SCG + D+G++ L NLK L LSD
Sbjct: 98 IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGIAYL 200
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI L
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQI 386
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L +L+ L+ I
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122
Query: 387 XXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSL 427
+TD G L +F+NL+ L
Sbjct: 123 SC-------------------GNVTDKGIIALHHFRNLKYL 144
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 290 ITDECLVHLKGLTNLESLNLD----SCG-IGDEGLVNLTGLCNLKCLELSD 335
I D CL L L NL+ L+ SCG + D+G++ L NLK L LSD
Sbjct: 98 IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 254 GSLFYLN-LNRCQLSDDGCEK-----FSKIGSLKVLNLG----FNEITDECLVHLKGLTN 303
G+ YL+ L L ++ E F++I SL+ L+LG + I++ +GL+N
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF---EGLSN 186
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363
L LNL C + + + NLT L L L+LS + + GL +L+ + + + I
Sbjct: 187 LRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244
Query: 364 DGSLRKLAGLSSLKSLNL 381
L SL +NL
Sbjct: 245 VIERNAFDNLQSLVEINL 262
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 81 SNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+NL +L+ N I +G +L L L + RNN I + AF + +L +LDL
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKEL----WLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 139 ---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+R + I G +GL L LN+ CN ++ PL L L
Sbjct: 168 GELKRLSYISEGA--FEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQ 337
++LNL N+I + K L +LE L L I + GL NL LEL D T
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 338 VGSSGLRHLSGLTNL-------ESI-NLSFTGISD------GSLRKLA--------GLSS 375
+ + +LS L L ESI + +F I G L++L+ GLS+
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 376 LKSLNL 381
L+ LNL
Sbjct: 187 LRYLNL 192
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%)
Query: 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357
+GL +L +L+LD CG+ + G GL L+ L L D + + L NL + L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 358 SFTGISDGSLRKLAGLSSLKSLNLDARQI 386
I GL SL L L +
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLES 306
D+ +LGSL +L+L+ LS F + SLK LNL N + L LTNL++
Sbjct: 94 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 153
Query: 307 LNLDSCGIGDE-GLVNLTGLCNLKCLEL 333
L + + E ++ GL +L LE+
Sbjct: 154 LRIGNVETFSEIRRIDFAGLTSLNELEI 181
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLES 306
D+ +LGSL +L+L+ LS F + SLK LNL N + L LTNL++
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 307 LNLDSCGIGDE-GLVNLTGLCNLKCLEL 333
L + + E ++ GL +L LE+
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEI 155
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
S S L +L+L+RC++ + + + L L L N I GLT+LE+L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSL 367
+ + L LK L ++ + S L + S LTNL ++LS+ I ++
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170
Query: 368 RKLAGLSSLKSLNL 381
L L +NL
Sbjct: 171 NDLQFLRENPQVNL 184
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
AL SL YL+L+R LS GC +S +G SL+ L+L FN + GL L+ L+
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDF 406
Query: 310 DSCGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+ ++L L L + ++T++ G+ GLT+L ++ ++ D
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLD-ISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDN 463
Query: 366 SLRK-LAGLSSLKSLNLDARQI 386
+L A ++L L+L Q+
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQL 485
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
S S L +L+L+RC++ + + + L L L N I GLT+LE+L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSL 367
+ + L LK L ++ + S L + S LTNL ++LS+ I ++
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 165
Query: 368 RKLAGLSSLKSLNL 381
L L +NL
Sbjct: 166 NDLQFLRENPQVNL 179
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 252 ALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNL 309
AL SL YL+L+R LS GC +S +G SL+ L+L FN + GL L+ L+
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDF 401
Query: 310 DSCGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 365
+ ++L L L + ++T++ G+ GLT+L ++ ++ D
Sbjct: 402 QHSTLKRVTEFSAFLSLEKLLYLD-ISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDN 458
Query: 366 SLRK-LAGLSSLKSLNLDARQI 386
+L A ++L L+L Q+
Sbjct: 459 TLSNVFANTTNLTFLDLSKCQL 480
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 32/169 (18%)
Query: 240 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI--TDECLVH 297
C + AA SL L Y+ N +L D G K+ +L+ L+L ++I +D C +
Sbjct: 316 CQINAASFPSLRDL----YIKGNMRKL-DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ 370
Query: 298 LKGLTNLESLNL---DSCGIGDEGLVN----------------------LTGLCNLKCLE 332
LK L +L+ LNL + G+ D+ L L+ L
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
LS + +S L+GL +L +NL DGS+ K L + SL +
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI 479
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%)
Query: 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308
+ S L +L +L+L RCQ++ + F L + L N + L G L+ L
Sbjct: 51 TFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLF 110
Query: 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 368
L GI + + + L NL+ L L + S L NL+ ++ I S +
Sbjct: 111 LTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRK 170
Query: 369 KLAGLSSLKSLNLD 382
L +L+L+
Sbjct: 171 DTNSLEQATNLSLN 184
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 36/169 (21%)
Query: 240 CPVTAACLDSLSALGSLFYL--NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI--TDECL 295
C ++AA SL+ L Y+ N+ + L GC K+G+L+ L+L N+I +D C
Sbjct: 314 CQISAANFPSLTHL----YIRGNVKKLHLGV-GC--LEKLGNLQTLDLSHNDIEASDCCS 366
Query: 296 VHLKGLTNLESLNL---DSCGIGDEGL-----------------VN-----LTGLCNLKC 330
+ LK L++L++LNL + G+ + +N L L+
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Query: 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 379
L L+ + +S L+GL L +NL DG++ K L ++ SL
Sbjct: 427 LNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSL 475
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 56/231 (24%)
Query: 77 LKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L+ NLQ+LD + I+ SD L+ LS+L +L+ N + Q +AF L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS-QAFKECPQLEL 401
Query: 136 LDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL TR+H + L L+ LN+ +C + S+ L+GL L+ L + +
Sbjct: 402 LDL-AFTRLHINAPQSPFQNLHFLQVLNLTYC-FLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 194 DSGIAYLKGLSISSVIFILCSMIIRLFCLHVFXXXXXXXXXXXXEGCPVTAACLDSLSAL 253
D I + L +
Sbjct: 460 DGTITKT-----------------------------------------------NLLQTV 472
Query: 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLKGL 301
GSL L L+ C L + F +G + ++L N +T + L HLKG+
Sbjct: 473 GSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI 523
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 33/164 (20%)
Query: 253 LGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310
L SL +L+L+R LS GC S G SLK L+L FN + L GL LE L+
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQ 404
Query: 311 SCGIGDEGLVNLT-GLCNLKCLELSDT--QVGSSGLRHLSGLTNLESI------------ 355
+ ++ L NL L++S T +V +G+ +GL++LE +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFL 462
Query: 356 --------NLSFTGISDGSLRKLA-----GLSSLKSLNLDARQI 386
NL+F +S L +L+ LSSL+ LN+ + Q+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
D + L +L +L+L++CQL F+ + SL+VLN+ N++
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 249 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 358
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ C++L S+D + ++ + G RG ++L++++F ++ G AF G INL K+
Sbjct: 316 FESCTSLVSIDLPYLVE--EIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371
Query: 137 DLER 140
+L +
Sbjct: 372 ELPK 375
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 116/294 (39%), Gaps = 69/294 (23%)
Query: 250 LSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVHL--KGLTN 303
L L + L+ C L+++ C+ SL L L NE+ D VHL +GL +
Sbjct: 20 LPLLQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDA-GVHLVLQGLQS 78
Query: 304 ----LESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHL-SGL----T 350
++ L+L +C + + G L L L+ L LSD +G +GLR L GL
Sbjct: 79 PTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQC 138
Query: 351 NLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQIXXXXXXXXXXXXXXXXXDLF 406
+LE + L + ++ S LA + +LK L + I
Sbjct: 139 HLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEA----------------- 181
Query: 407 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDXXXXXXXXXXXXXXXTDKTLEL 466
GAR+ G A + L +L + GLT A K + +
Sbjct: 182 GARVLGQGLA--DSACQLETLRLENCGLTPANCKDLCG---------------------I 218
Query: 467 ISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLTLESCKVTANDIKRL 515
++ L L++ ++ + AG+ L P L++L L C +TA+ + L
Sbjct: 219 VASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDL 272
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 253 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 309
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 310 DSCGIGD 316
D + D
Sbjct: 228 DGNSLSD 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLV-HLKGLTN 303
DS S+LGSL +L+L+ LS+ F + SL LNL + + + L HL L
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
L N+D+ + GL L+ LE+ + + S + L + N+
Sbjct: 128 LRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 174
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 290
D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 249 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 358
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 249 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGI 362
L + + L LK L ++ + S L + S LTNLE ++LS I
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 288
D + L +L +L+L++CQL F+ + SL+VLN+ N
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 249 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLS 358
L + + L LK L ++ + S L + S LTNLE ++LS
Sbjct: 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 248 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL---GFNEITDECLV-HLKGLTN 303
DS S+LGSL +L+L+ LS+ F + SL LNL + + + L HL L
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352
L N+D+ + GL L+ LE+ + + S + L + N+
Sbjct: 154 LRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 249 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGI 362
L + + L LK L ++ + S L + S LTNLE ++LS I
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 249 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 106
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGI 362
L + + L LK L ++ + S L + S LTNLE ++LS I
Sbjct: 107 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 249 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGI 362
L + + L LK L ++ + S L + S LTNLE ++LS I
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 247 LDSLSALGSLFYLNLNRCQLSD---DGCEKF------------------SKIGSLKVLNL 285
L +L L LNL+RC+L+ DG + +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 346 LSGLTNLESI 355
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQV 338
+L+L N + L L T L LNLD C + +G + + G L+LS Q+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG-----TLDLSHNQL 89
Query: 339 GSSGL--RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXX 396
S L + L LT L+ +SF ++ L L GL L+ L L ++
Sbjct: 90 QSLPLLGQTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 397 XXXXXXXDLFGARITDSGAAYLRNFKNLRSL 427
L ++T+ A L +NL +L
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 249 SLSALGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306
S + L L+L+RC++ +DG + + L L L N I L GL++L+
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 106
Query: 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGI 362
L + + L LK L ++ + S L + S LTNLE ++LS I
Sbjct: 107 LVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 247 LDSLSALGSLFYLNLNRCQLSD---DGCEKF------------------SKIGSLKVLNL 285
L +L L LNL+RC+L+ DG + +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 346 LSGLTNLESI 355
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQV 338
+L+L N + L L T L LNLD C + +G + + G L+LS Q+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG-----TLDLSHNQL 89
Query: 339 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXX 398
S L L L +++SF ++ L L GL L+ L L ++
Sbjct: 90 QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 399 XXXXXDLFGARITDSGAAYLRNFKNLRSL 427
L ++T+ A L +NL +L
Sbjct: 149 KLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 247 LDSLSALGSLFYLNLNRCQLSD---DGCEKF------------------SKIGSLKVLNL 285
L +L L LNL+RC+L+ DG + +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 346 LSGLTNLESI 355
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 5/147 (3%)
Query: 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGS 340
+L+L N + L L T L LNLD C + + + G L L L+LS Q+ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQS 91
Query: 341 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXX 400
L + L L +++SF ++ L L GL L+ L L ++
Sbjct: 92 LPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 401 XXXDLFGARITDSGAAYLRNFKNLRSL 427
L ++T+ A L +NL +L
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 253 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 309
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 310 D 310
D
Sbjct: 228 D 228
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 247 LDSLSALGSLFYLNLNRCQLSD---DGCEKF------------------SKIGSLKVLNL 285
L +L L LNL+RC+L+ DG + +L VL++
Sbjct: 48 LATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 345
FN +T L L+GL L+ L L + LT L+ L L++ Q+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 346 LSGLTNLESI 355
L+GL NL+++
Sbjct: 168 LNGLENLDTL 177
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVH 297
PVT L SL + L +LN++ L G K S K+ SL+VL+L N I+ +V
Sbjct: 112 PVTT--LTSLGSCSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLDLSANSISGANVVG 167
Query: 298 L---KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
G L+ L + I G V+++ NL+ L++S S+G+ L + L+
Sbjct: 168 WVLSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNF-STGIPFLGDCSALQH 224
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+++S +S R ++ + LK LN+ + Q
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNL--TGLCNLKCLE 332
K+ LKVL+L FNE + E L L+ +L +L+L S L NL L+ L
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L + LS + L S++LSF +S L LS L+ L L
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 253 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 309
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 163 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 221
Query: 310 DSCGIGD 316
D + D
Sbjct: 222 DGNSLCD 228
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 253 LGSLFYLNL--NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNL 309
+ L LNL NR DD K +LK+LNL NE+ E L +KGL LE L L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 227
Query: 310 DSCGIGD 316
D + D
Sbjct: 228 DGNSLCD 234
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 276 KIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNL--TGLCNLKCLE 332
K+ LKVL+L FNE + E L L+ +L +L+L S L NL L+ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381
L + LS + L S++LSF +S L LS L+ L L
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 241 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVH 297
PVT L SL + L +LN++ L G K S K+ SL+VL+L N I+ +V
Sbjct: 115 PVTT--LTSLGSCSGLKFLNVSSNTLDFPG--KVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 298 L---KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354
G L+ L + I G V+++ NL+ L++S S+G+ L + L+
Sbjct: 171 WVLSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNF-STGIPFLGDCSALQH 227
Query: 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386
+++S +S R ++ + LK LN+ + Q
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,087,529
Number of Sequences: 62578
Number of extensions: 403236
Number of successful extensions: 1261
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 306
length of query: 529
length of database: 14,973,337
effective HSP length: 103
effective length of query: 426
effective length of database: 8,527,803
effective search space: 3632844078
effective search space used: 3632844078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)