Query 009672
Match_columns 529
No_of_seqs 241 out of 3079
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 15:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-43 2.8E-48 384.8 25.0 462 54-527 90-577 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.4E-43 3E-48 384.6 24.4 445 57-509 140-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.6E-37 1.9E-41 282.8 4.3 392 57-480 52-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.9E-36 4.1E-41 280.5 3.3 397 79-507 49-451 (873)
5 KOG0618 Serine/threonine phosp 100.0 9.8E-31 2.1E-35 255.4 -2.6 470 16-516 6-497 (1081)
6 KOG0444 Cytoskeletal regulator 99.9 8.2E-29 1.8E-33 232.1 -3.4 350 99-485 25-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 2.9E-28 6.3E-33 228.4 -5.4 366 105-506 6-373 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 1.4E-28 3.1E-33 218.6 -9.2 415 59-516 70-549 (565)
9 KOG0618 Serine/threonine phosp 99.9 1.4E-27 3E-32 233.5 -4.6 442 59-528 23-483 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 6.5E-28 1.4E-32 214.4 -7.0 431 45-528 38-535 (565)
11 PLN03210 Resistant to P. syrin 99.9 2.2E-21 4.8E-26 211.3 20.5 402 3-461 490-908 (1153)
12 PLN03210 Resistant to P. syrin 99.8 4.3E-19 9.4E-24 193.5 20.0 338 100-482 552-904 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.8 3E-18 6.4E-23 162.9 21.8 92 248-339 17-121 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 8E-18 1.7E-22 160.0 21.4 264 176-482 19-318 (319)
15 KOG4237 Extracellular matrix p 99.8 4.4E-21 9.5E-26 170.9 -2.5 138 52-191 62-199 (498)
16 KOG4237 Extracellular matrix p 99.7 1.5E-19 3.3E-24 161.2 -2.0 279 230-509 67-360 (498)
17 PRK15387 E3 ubiquitin-protein 99.6 3.1E-15 6.7E-20 151.9 13.1 244 230-515 222-465 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 3.5E-15 7.5E-20 151.5 13.3 265 155-491 201-465 (788)
19 KOG1909 Ran GTPase-activating 99.6 1.5E-14 3.2E-19 127.9 10.6 192 324-516 90-321 (382)
20 PRK15370 E3 ubiquitin-protein 99.5 8E-14 1.7E-18 142.6 12.5 256 230-516 178-436 (754)
21 KOG4341 F-box protein containi 99.5 2.4E-14 5.2E-19 129.4 6.8 301 57-405 138-459 (483)
22 KOG1909 Ran GTPase-activating 99.5 1.5E-13 3.3E-18 121.6 9.5 159 298-456 116-308 (382)
23 PRK15370 E3 ubiquitin-protein 99.5 3E-13 6.5E-18 138.5 11.8 98 230-339 220-317 (754)
24 KOG4341 F-box protein containi 99.3 1.5E-12 3.2E-17 118.1 4.2 306 29-359 134-461 (483)
25 KOG2120 SCF ubiquitin ligase, 99.3 2.3E-12 5.1E-17 111.5 4.8 264 1-312 100-373 (419)
26 KOG3207 Beta-tubulin folding c 99.3 9.3E-13 2E-17 120.0 1.0 212 298-510 117-341 (505)
27 KOG2120 SCF ubiquitin ligase, 99.2 2.2E-11 4.8E-16 105.6 4.6 196 327-524 186-390 (419)
28 KOG3207 Beta-tubulin folding c 99.2 1.3E-11 2.7E-16 112.7 2.9 141 53-193 142-284 (505)
29 KOG0617 Ras suppressor protein 99.1 8.3E-13 1.8E-17 104.8 -4.9 159 79-270 31-189 (264)
30 KOG0617 Ras suppressor protein 99.1 4.2E-13 9.2E-18 106.4 -7.8 159 324-488 31-190 (264)
31 PF14580 LRR_9: Leucine-rich r 99.1 6.1E-11 1.3E-15 98.7 3.3 130 371-505 16-150 (175)
32 PF14580 LRR_9: Leucine-rich r 99.1 4.2E-11 9.1E-16 99.7 1.6 129 347-480 16-149 (175)
33 KOG1259 Nischarin, modulator o 99.0 7.4E-11 1.6E-15 102.5 1.6 128 374-508 284-412 (490)
34 KOG4658 Apoptotic ATPase [Sign 99.0 1.6E-10 3.5E-15 120.6 2.3 129 58-191 524-653 (889)
35 COG5238 RNA1 Ran GTPase-activa 99.0 1.2E-09 2.6E-14 93.8 7.0 245 248-510 24-318 (388)
36 KOG1259 Nischarin, modulator o 98.9 5.8E-10 1.3E-14 97.0 1.5 131 349-486 283-414 (490)
37 COG5238 RNA1 Ran GTPase-activa 98.9 1E-08 2.3E-13 88.1 8.8 243 176-461 26-317 (388)
38 KOG4658 Apoptotic ATPase [Sign 98.7 8.8E-09 1.9E-13 107.8 3.7 271 230-506 545-830 (889)
39 PF13855 LRR_8: Leucine rich r 98.7 4.8E-09 1E-13 71.6 0.5 59 447-506 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.6 5.6E-08 1.2E-12 66.3 4.1 60 57-117 1-60 (61)
41 PLN03150 hypothetical protein; 98.6 1.2E-07 2.6E-12 97.2 7.1 105 400-505 420-525 (623)
42 COG4886 Leucine-rich repeat (L 98.5 1.6E-07 3.5E-12 91.9 6.4 197 282-488 97-294 (394)
43 KOG1859 Leucine-rich repeat pr 98.5 4.2E-09 9.1E-14 102.5 -5.1 127 376-509 166-293 (1096)
44 KOG3665 ZYG-1-like serine/thre 98.5 3.8E-07 8.3E-12 93.2 8.3 35 300-335 58-92 (699)
45 COG4886 Leucine-rich repeat (L 98.5 1.9E-07 4.1E-12 91.4 5.8 200 257-466 96-296 (394)
46 KOG2982 Uncharacterized conser 98.4 2.1E-07 4.5E-12 81.4 3.9 206 301-509 70-291 (418)
47 PLN03150 hypothetical protein; 98.4 4.7E-07 1E-11 92.9 7.1 106 376-482 420-526 (623)
48 KOG0532 Leucine-rich repeat (L 98.4 1.3E-08 2.8E-13 96.6 -4.6 192 58-288 76-270 (722)
49 KOG3665 ZYG-1-like serine/thre 98.4 3.2E-07 7E-12 93.7 4.9 109 30-141 121-230 (699)
50 KOG2982 Uncharacterized conser 98.4 1.7E-07 3.7E-12 81.9 2.3 185 324-509 69-263 (418)
51 KOG0531 Protein phosphatase 1, 98.3 3.8E-08 8.3E-13 96.3 -3.3 218 276-507 93-317 (414)
52 KOG0531 Protein phosphatase 1, 98.3 5.4E-08 1.2E-12 95.3 -3.2 217 277-508 71-290 (414)
53 KOG1859 Leucine-rich repeat pr 98.2 3.1E-08 6.7E-13 96.7 -6.2 126 352-484 166-292 (1096)
54 KOG0532 Leucine-rich repeat (L 98.2 3.8E-08 8.2E-13 93.5 -5.8 196 301-506 74-271 (722)
55 KOG1947 Leucine rich repeat pr 98.0 1.1E-05 2.3E-10 81.7 7.7 108 253-360 187-305 (482)
56 KOG1947 Leucine rich repeat pr 98.0 1.7E-05 3.6E-10 80.2 8.1 227 276-513 186-446 (482)
57 KOG4579 Leucine-rich repeat (L 97.8 4.5E-06 9.8E-11 64.5 0.5 108 376-486 29-138 (177)
58 PF13306 LRR_5: Leucine rich r 97.8 1.4E-05 3E-10 64.4 2.5 13 417-429 76-88 (129)
59 PF13306 LRR_5: Leucine rich r 97.8 1.2E-05 2.6E-10 64.8 2.1 124 368-498 6-129 (129)
60 KOG1644 U2-associated snRNP A' 97.7 4E-05 8.7E-10 63.6 3.9 126 376-506 21-151 (233)
61 KOG1644 U2-associated snRNP A' 97.7 4.4E-05 9.5E-10 63.4 3.7 106 374-482 42-151 (233)
62 KOG3864 Uncharacterized conser 97.7 3.3E-05 7.2E-10 64.2 3.0 82 400-481 103-186 (221)
63 PF12799 LRR_4: Leucine Rich r 97.6 7.3E-05 1.6E-09 46.4 3.7 36 472-508 2-37 (44)
64 KOG2123 Uncharacterized conser 97.5 1.4E-05 3.1E-10 69.5 -0.9 79 351-433 20-99 (388)
65 KOG2123 Uncharacterized conser 97.5 1.4E-05 3.1E-10 69.5 -1.1 99 374-476 19-122 (388)
66 PF12799 LRR_4: Leucine Rich r 97.5 0.00017 3.7E-09 44.8 4.0 36 399-435 2-37 (44)
67 KOG3864 Uncharacterized conser 97.5 5.7E-05 1.2E-09 62.8 2.1 84 58-141 102-186 (221)
68 KOG4579 Leucine-rich repeat (L 97.5 2E-05 4.4E-10 61.0 -0.7 83 372-456 51-133 (177)
69 KOG4308 LRR-containing protein 97.2 6.7E-05 1.5E-09 73.7 -0.3 312 181-516 88-453 (478)
70 PRK15386 type III secretion pr 96.9 0.0028 6.2E-08 60.2 7.0 33 79-117 50-83 (426)
71 KOG2739 Leucine-rich acidic nu 96.8 0.00046 1E-08 60.1 1.3 103 375-480 44-152 (260)
72 KOG2739 Leucine-rich acidic nu 96.8 0.00058 1.3E-08 59.4 1.8 82 420-502 63-150 (260)
73 KOG4308 LRR-containing protein 96.4 0.00041 8.9E-09 68.3 -2.0 201 304-505 89-328 (478)
74 PRK15386 type III secretion pr 96.4 0.0073 1.6E-07 57.5 6.0 74 370-456 48-122 (426)
75 PF13516 LRR_6: Leucine Rich r 93.8 0.044 9.6E-07 28.7 1.6 22 494-515 1-22 (24)
76 smart00367 LRR_CC Leucine-rich 92.4 0.21 4.5E-06 26.7 2.9 22 446-467 2-23 (26)
77 smart00367 LRR_CC Leucine-rich 91.9 0.13 2.8E-06 27.6 1.7 19 81-99 2-20 (26)
78 PF13516 LRR_6: Leucine Rich r 91.8 0.088 1.9E-06 27.5 1.0 21 471-491 2-22 (24)
79 PF13504 LRR_7: Leucine rich r 91.4 0.15 3.2E-06 24.1 1.4 14 495-508 1-14 (17)
80 PF00560 LRR_1: Leucine Rich R 89.8 0.23 5E-06 25.3 1.4 12 59-70 2-13 (22)
81 smart00368 LRR_RI Leucine rich 89.3 0.48 1E-05 25.9 2.6 22 495-516 2-23 (28)
82 smart00370 LRR Leucine-rich re 84.4 0.87 1.9E-05 24.2 1.8 18 471-488 2-19 (26)
83 smart00369 LRR_TYP Leucine-ric 84.4 0.87 1.9E-05 24.2 1.8 18 471-488 2-19 (26)
84 KOG3763 mRNA export factor TAP 84.0 1.3 2.8E-05 43.6 4.0 38 419-456 215-254 (585)
85 smart00365 LRR_SD22 Leucine-ri 65.2 5.2 0.00011 21.4 1.5 15 495-509 2-16 (26)
86 KOG0473 Leucine-rich repeat pr 52.9 0.47 1E-05 41.1 -5.8 87 368-457 36-122 (326)
87 KOG3763 mRNA export factor TAP 52.4 17 0.00036 36.3 3.7 37 372-408 216-254 (585)
88 KOG4242 Predicted myosin-I-bin 43.7 1.5E+02 0.0032 29.4 8.3 278 230-511 165-484 (553)
89 KOG0473 Leucine-rich repeat pr 41.7 0.52 1.1E-05 40.8 -7.2 90 395-488 39-128 (326)
90 KOG4242 Predicted myosin-I-bin 41.2 56 0.0012 32.1 5.2 15 496-510 355-369 (553)
91 smart00364 LRR_BAC Leucine-ric 39.3 18 0.00039 19.4 1.0 16 495-510 2-17 (26)
92 PF07723 LRR_2: Leucine Rich R 35.2 36 0.00078 18.1 1.8 21 496-516 1-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-43 Score=384.82 Aligned_cols=462 Identities=19% Similarity=0.201 Sum_probs=251.6
Q ss_pred hcCCceeEEEecCcccCchhhhhc-cCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCC
Q 009672 54 SQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (529)
Q Consensus 54 ~~~~~l~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 132 (529)
...++|++|+|++|.+++..+..+ ..+++|++|++++|. +....+ .+.+++|++|++++|. ++...|..++++++
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p--~~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~ 165 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP--RGSIPNLETLDLSNNM-LSGEIPNDIGSFSS 165 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-cccccC--ccccCCCCEEECcCCc-ccccCChHHhcCCC
Confidence 346777777777777765555443 466677777776663 332211 1345566666666655 34445555666666
Q ss_pred CCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccC-ccchhhh
Q 009672 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFI 211 (529)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~~~~~~~ 211 (529)
|++|++++|......+..+.++++|++|++++| .+....+..++++++|+.|++++|.++...+..+..+. +..+.+.
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 666666655433344445555566666666553 23333445555555666666655555443333332221 1111111
Q ss_pred hhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCC
Q 009672 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291 (529)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 291 (529)
.... ....+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 245 ~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 245 YNNL---TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred Ccee---ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 0000 0112333444455555555555544444444445555555555555554444444444555555555555554
Q ss_pred hHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccCh------------------------hhhhhcc
Q 009672 292 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS------------------------SGLRHLS 347 (529)
Q Consensus 292 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------------------~~~~~~~ 347 (529)
+..+..+..+++|+.|++.+|.+....+..++.+++|+.|++++|.+.. ..+..+.
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 4444444455555555555554443344444444555555555544443 3333344
Q ss_pred CCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEE
Q 009672 348 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427 (529)
Q Consensus 348 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 427 (529)
.+++|+.|++++|.+....+..+..++.|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..++|+.|
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L 480 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENL 480 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence 44455555555554444344444445555555555555544433334445555555555555544333322 33566677
Q ss_pred EccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccC
Q 009672 428 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507 (529)
Q Consensus 428 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 507 (529)
++++|.+.+..+..+.++++|+.|++++| .+....|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 77777776666666777778888888888 67777777777888888888888888877777777888888888888887
Q ss_pred ChhHHHHhhcCCCCCceecC
Q 009672 508 TANDIKRLQSRDLPNLVSFR 527 (529)
Q Consensus 508 ~~~~~~~l~~~~~~~l~~l~ 527 (529)
+......+. .++.|+.++
T Consensus 560 ~~~~p~~l~--~l~~L~~l~ 577 (968)
T PLN00113 560 SGEIPKNLG--NVESLVQVN 577 (968)
T ss_pred cccCChhHh--cCcccCEEe
Confidence 755444444 455666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-43 Score=384.60 Aligned_cols=445 Identities=20% Similarity=0.176 Sum_probs=316.9
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
++|++|+|++|.+++..+..++.+++|++|++++| .+....+..++++++|++|++++|. ++...|..+.++++|++|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEE
Confidence 44444555554444444444555555555555554 3333334445555555555555554 334445555555555555
Q ss_pred eccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccC-ccchhhhhhhh
Q 009672 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS-ISSVIFILCSM 215 (529)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~~ 215 (529)
++++|......+..++.+++|++|++++| .+.+..+..+.++++|+.|++++|.+++..+..+..+. +..+.+....
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~- 295 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS- 295 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-
Confidence 55555433334444555555555555553 23334445555555666666655555443333332220 1111111110
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
....++..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus 296 --l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 296 --LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred --eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 011244556667777777777777766666677777788888888777776666677777788888888877776666
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+....+..+..+++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 67777788888888888777667777888999999999999988777778889999999999999998877777778999
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
|+.|++++|.+....+..+ ..++|+.|++++|++.+..+..+.++++|+.|++++|.+.+..+..+.++++|++|++++
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 9999999999876544443 457999999999999988888889999999999999999988888899999999999999
Q ss_pred CCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
| .++...|..+..+++|+.|++++|++.+..+..+..+++|+.+++++|+++.
T Consensus 533 N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 533 N-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred C-cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9 8888899999999999999999999998888889999999999999998764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-37 Score=282.76 Aligned_cols=392 Identities=23% Similarity=0.246 Sum_probs=308.0
Q ss_pred CceeEEEecCcccCchhhhhc-cCC-CCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 57 SSLLSVDLSGSDVTDSGLIHL-KDC-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l-~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+.+.++.++..+.......+ +-+ +.-++|++++| .+..+.+..|.++++|+.+++..|.. ..+|...+...+|+
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLE 128 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhccccccccccee
Confidence 447788888888776555554 333 35778999987 78888888999999999999998874 45565555566699
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCS 214 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 214 (529)
.|.+.+|.+.+...+.+..++.||.||++. +.++......+..-.++++|++++|+|++.....|..+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l----------- 196 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL----------- 196 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeecccccccccccccccc-----------
Confidence 999988866666667788888999999987 56666666677777788999999999988887777776
Q ss_pred hHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH
Q 009672 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294 (529)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 294 (529)
.+|..|.++.|.++......|+++++|+.|++..|.+....--.|..+++|+.+.+..|.+....
T Consensus 197 ---------------nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 197 ---------------NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred ---------------chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 78888899999888887788888899999999888876554456677888888888888776555
Q ss_pred HHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCC
Q 009672 295 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 374 (529)
Q Consensus 295 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 374 (529)
...|..+.++++|++..|.+......++.++++|+.|+++.|.+...-+..++-+++|+.|++++|.+.......|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 55678888888888888888776667777888888888888888777777777788888888888888887777788888
Q ss_pred CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCCh---HHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeE
Q 009672 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 451 (529)
.|++|.++.|.++......|..+++|++|+++.|.+.. .....|..+++|+.|++.||++..+.-.+|.+++.|++|
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 88888888888887766777777888888888886653 235566778888888888888888777788888888888
Q ss_pred ecCCCCCCChhHHHHHhCCCCCCeeeccC
Q 009672 452 NLSQNCNLTDKTLELISGLTGLVSLNVSN 480 (529)
Q Consensus 452 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 480 (529)
++.+| .+..+.+.+|..+ .|++|.+..
T Consensus 422 dL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 422 DLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCCCC-cceeecccccccc-hhhhhhhcc
Confidence 88888 6777777777777 777776653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-36 Score=280.48 Aligned_cols=397 Identities=23% Similarity=0.316 Sum_probs=344.4
Q ss_pred CCC-CCCeEeccCCcccCchhhhhccCC--CCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCC
Q 009672 79 DCS-NLQSLDFNFCIQISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155 (529)
Q Consensus 79 ~~~-~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 155 (529)
.|+ +-+.|+.++. .+.......+... +.-+.|+++.|. ++...+..|.++++|+.+++.+| .+...|...+...
T Consensus 49 ~c~c~~~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESG 125 (873)
T ss_pred cCCCCceeeecCcc-ccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhhccccccccc
Confidence 344 4566777775 5665544444433 245669999997 78889999999999999999986 5666666666677
Q ss_pred cCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEE
Q 009672 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235 (529)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 235 (529)
+|+.|++.+ +.++....+++..++.|+.||++.|.|+......++.- .++++|
T Consensus 126 hl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~--------------------------~ni~~L 178 (873)
T KOG4194|consen 126 HLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAK--------------------------VNIKKL 178 (873)
T ss_pred ceeEEeeec-cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC--------------------------CCceEE
Confidence 899999998 77887788899999999999999999887666665544 799999
Q ss_pred EccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC
Q 009672 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315 (529)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 315 (529)
++++|+++......|..+.+|..|.++.|.++..++..|.++++|+.|++..|++...-...|.++++|+.|.+..|.+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 99999999887788899999999999999999988888989999999999999887544556889999999999999888
Q ss_pred hhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHh
Q 009672 316 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 395 (529)
Q Consensus 316 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 395 (529)
......|..+.+++.|++..|.+.......+-+++.|+.|+++.|.|..+.+..+..+++|++|+++.|.++...++.|.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 77777888899999999999999888777778899999999999999999999999999999999999999999899999
Q ss_pred cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh---hhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCC
Q 009672 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 472 (529)
Q Consensus 396 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 472 (529)
.+..|++|.++.|.++......|..+++|++|+++.|.++.. ....|.++++|++|++.|| ++..+.-.+|.+++.
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEA 417 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcc
Confidence 999999999999999999888999999999999999987543 3456788999999999999 899988899999999
Q ss_pred CCeeeccCCccChhHHHhccCCCCCcEEeecCccC
Q 009672 473 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 507 (529)
Q Consensus 473 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 507 (529)
|+.|+|.+|.+-..-+++|..+ .|++|.+..-.|
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 9999999999998889999887 899999876544
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=9.8e-31 Score=255.37 Aligned_cols=470 Identities=23% Similarity=0.223 Sum_probs=304.2
Q ss_pred hcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccC
Q 009672 16 YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95 (529)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (529)
.+..++.++...+.+..++++++...-.+... .++.... -+|++|++++|.+. ..+..+...++|++|+++.| .+.
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~-v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~ 81 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKR-VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIR 81 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhccccccccCc-hHHhhhe-eeeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHh
Confidence 34556677777777766888887665544333 3444433 34999999999876 45555678889999999987 455
Q ss_pred chhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCC----------
Q 009672 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC---------- 165 (529)
Q Consensus 96 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---------- 165 (529)
.. +....++.+|++|.|..+.. ...|..+..+++|++|+++.|. +...+..+..+..++.+..+++
T Consensus 82 ~v-p~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 82 SV-PSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred hC-chhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence 44 46778899999999999874 7789999999999999999874 4455555555555555555553
Q ss_pred --------cccCccccccccCCCCCCeEEccCCCCChhHHHHhhcc---CccchhhhhhhhHHHhhhhhhhhcccCCccE
Q 009672 166 --------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---SISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234 (529)
Q Consensus 166 --------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 234 (529)
+.+.+..+.++..+.+ .|+++.|.+.......+..+ ...+.++.. .--.-++++.
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~------------l~~~g~~l~~ 223 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSE------------LEISGPSLTA 223 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccce------------EEecCcchhe
Confidence 1122222222333332 35555554442222221111 000000000 0011144445
Q ss_pred EEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCC
Q 009672 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314 (529)
Q Consensus 235 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (529)
|..+.|.+.... ......+|++++++.+.+...+ +++..+.+|+.++..+|.+. ..+..+...++|+.|....|.+
T Consensus 224 L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 224 LYADHNPLTTLD--VHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred eeeccCcceeec--cccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence 555554444211 1112246666666666665543 66666666666666666664 3444555566666666666655
Q ss_pred ChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCC-CCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHH
Q 009672 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 393 (529)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 393 (529)
.. .+........|++|++..|.+.......+.... .++.+..+.+.+.......=..++.|+.|.+.+|.+++...+.
T Consensus 300 ~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 EY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 43 233444566777777777766555444443333 2555555555544432111123467899999999999988888
Q ss_pred HhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCC
Q 009672 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473 (529)
Q Consensus 394 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 473 (529)
+-+.++|+.|++++|++..++...+.++..|++|+++||.++.. +..+..++.|++|...+| .+... | .+.+++.|
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN-~l~~f-P-e~~~l~qL 454 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSN-QLLSF-P-ELAQLPQL 454 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCC-ceeec-h-hhhhcCcc
Confidence 88999999999999999999999999999999999999999886 467888999999999998 56553 4 78889999
Q ss_pred CeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+.+|++.|+++.........-++|++||++||.....+.+.++
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~ 497 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLK 497 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhH
Confidence 9999999999876664433338999999999975554445554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=8.2e-29 Score=232.06 Aligned_cols=350 Identities=21% Similarity=0.216 Sum_probs=235.8
Q ss_pred hhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccC
Q 009672 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178 (529)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 178 (529)
+..+..++.++.|.|..... ...|+.++.+.+|++|.+.+| .+......+..++.||.+.+..++--....|..+..
T Consensus 25 P~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred chhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 44444555555555555442 345666666666666666665 233444556667777777777755444456677888
Q ss_pred CCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCe
Q 009672 179 LTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFY 258 (529)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 258 (529)
+..|+.|+++.|.++. .+..++.- +++-.|++++|++..+....|.++..|-.
T Consensus 102 l~dLt~lDLShNqL~E-vP~~LE~A--------------------------Kn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLRE-VPTNLEYA--------------------------KNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cccceeeecchhhhhh-cchhhhhh--------------------------cCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 8999999999888764 23333333 88889999999988877777788889999
Q ss_pred EecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC-hhhhhhhcCCCCCCeEEcCCCc
Q 009672 259 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQ 337 (529)
Q Consensus 259 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 337 (529)
|++++|++... |..+..+.+|++|++++|++.......+.++++|+.|.+++.+-+ .-.+..+..+.+|..++++.|+
T Consensus 155 LDLS~NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 99999987654 445667888999999998876544555666777777777776332 2244556667777777777776
Q ss_pred cChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH-HH
Q 009672 338 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AA 416 (529)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~ 416 (529)
+... +..+-++++|+.|++++|.++.... ......+|++|+++.|.++.. |..+..++.|+.|...+|+++..+ |.
T Consensus 234 Lp~v-Pecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 234 LPIV-PECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred CCcc-hHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCcc
Confidence 6533 4445566777777777777665332 222335677777777777765 566667777777777777766533 55
Q ss_pred hhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 417 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 417 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
.++++.+|+++..++|.+.- .|..+..|+.|++|.++.| .+.. .|++++-++.|+.|++..|+-..
T Consensus 311 GIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~N-rLiT-LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHN-RLIT-LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred chhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhccccc-ceee-chhhhhhcCCcceeeccCCcCcc
Confidence 66777777777777776653 3666666777777777777 3332 46777777777777777776443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.9e-28 Score=228.38 Aligned_cols=366 Identities=22% Similarity=0.254 Sum_probs=297.8
Q ss_pred CCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCe
Q 009672 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (529)
Q Consensus 105 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (529)
++-.+-.++++|.+-.+..|.....+++++.|.+.+. .+...|..++.+.+|++|.+.+++-++ ....++.++.||.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHH
Confidence 3445667777777544678889999999999999884 677888999999999999999955433 4577889999999
Q ss_pred EEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCC
Q 009672 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 264 (529)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (529)
+.++.|++...++ |..+-.+..|..|+++.|++.+ .|..+.+..++-.|++++|
T Consensus 83 v~~R~N~LKnsGi-------------------------P~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGI-------------------------PTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYN 136 (1255)
T ss_pred HhhhccccccCCC-------------------------Cchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccC
Confidence 9999998765432 1122334899999999999987 4778888899999999999
Q ss_pred cCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccC-hhhh
Q 009672 265 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-SSGL 343 (529)
Q Consensus 265 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~ 343 (529)
++...+-..+.++..|-.|++++|++.. .|..+..+..|++|.+++|.+.......+..+++|+.|++++..-+ ...+
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 9987766666788899999999999874 4556778899999999999877655666666778888888876432 3345
Q ss_pred hhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCC
Q 009672 344 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 423 (529)
Q Consensus 344 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 423 (529)
..+..+.+|+.++++.|++.. .+.++-.+++|+.|++++|.++.... ..+...+|++|+++.|+++.. |.++.+++.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~k 292 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTK 292 (1255)
T ss_pred CchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHH
Confidence 666778999999999999876 56777788999999999999987532 334556899999999999987 567889999
Q ss_pred CcEEEccCCCCChhh-hhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEee
Q 009672 424 LRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502 (529)
Q Consensus 424 L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 502 (529)
|+.|.+.+|+++-.+ |..++++..|+++..++| . ....|++++.|+.|+.|.++.|.+.. .|+++.-++-|+.||+
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~-LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-K-LELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhcc-c-cccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeec
Confidence 999999999876544 557888999999999998 4 45689999999999999999999875 3677778899999999
Q ss_pred cCcc
Q 009672 503 ESCK 506 (529)
Q Consensus 503 ~~~~ 506 (529)
+.|+
T Consensus 370 reNp 373 (1255)
T KOG0444|consen 370 RENP 373 (1255)
T ss_pred cCCc
Confidence 9994
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.4e-28 Score=218.57 Aligned_cols=415 Identities=19% Similarity=0.216 Sum_probs=226.3
Q ss_pred eeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEec
Q 009672 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (529)
Q Consensus 59 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 138 (529)
+.+++++++++. ..+++++.+..++.|+.++| +++. .++.++.+.+|+.|+++++.. ...++.++.+-.|+.++.
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls~-lp~~i~s~~~l~~l~~s~n~~--~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLSE-LPEQIGSLISLVKLDCSSNEL--KELPDSIGRLLDLEDLDA 144 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHhh-ccHHHhhhhhhhhhhccccce--eecCchHHHHhhhhhhhc
Confidence 556666665554 34444555555555555554 2322 244445555555555555543 233444444444444444
Q ss_pred cCccccccccccccC-----------------------CCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChh
Q 009672 139 ERCTRIHGGLVNLKG-----------------------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195 (529)
Q Consensus 139 ~~~~~~~~~~~~~~~-----------------------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 195 (529)
.+| .....++.+.+ ++.|++++... +.-+..|+.++.+.+|..|++..|.+...
T Consensus 145 ~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~--N~L~tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 145 TNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS--NLLETLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred ccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch--hhhhcCChhhcchhhhHHHHhhhcccccC
Confidence 443 22223333333 55555555543 22233455556666666666655554431
Q ss_pred HHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhh
Q 009672 196 GIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 275 (529)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 275 (529)
| .|..|..|.++.++.+.+.....+..+.++++..||+..|++.+ .|+.+.
T Consensus 222 ---------------------------P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~c 272 (565)
T KOG0472|consen 222 ---------------------------P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEIC 272 (565)
T ss_pred ---------------------------C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHH
Confidence 1 34455667777777666665544445567777777777777655 345666
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCC--CCCCeEE-------cCCCccCh------
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL--CNLKCLE-------LSDTQVGS------ 340 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~-------l~~~~~~~------ 340 (529)
.+++|+.|++++|.++. .|..++++ .|+.|.+.+|.+..+-...+.+- .-|++|. ++...-+.
T Consensus 273 lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 66677777777777663 44456666 67777777765543221111110 0111111 00000000
Q ss_pred --hhhhhccCCCCCCeEeccCCCCChhhhhhhcCC--CCCcEEECCCCCCCHH-----------------------HHHH
Q 009672 341 --SGLRHLSGLTNLESINLSFTGISDGSLRKLAGL--SSLKSLNLDARQITDT-----------------------GLAA 393 (529)
Q Consensus 341 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~-----------------------~~~~ 393 (529)
..........+.+.|++++-.++..+...|... .-...++++.|.+... .+..
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 000000111234444444444443332222211 1133344444433322 2344
Q ss_pred HhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCC
Q 009672 394 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 473 (529)
Q Consensus 394 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 473 (529)
++.+++|.-|++++|-+.+.+. -++.+..|+.|+++.|.+... |..+.....++.+-.++| ++....++.+.++.+|
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPE-EMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNN-QIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHhhhcceeeecccchhhhcch-hhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccc-cccccChHHhhhhhhc
Confidence 5566777788887776665533 344566688888888776543 555555556777777777 7888778889999999
Q ss_pred CeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 474 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
..|++.+|.+...++ .++++.+|++|++.||+|..+....+-
T Consensus 508 ~tLDL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr~Pr~~iLm 549 (565)
T KOG0472|consen 508 TTLDLQNNDLQQIPP-ILGNMTNLRHLELDGNPFRQPRHQILM 549 (565)
T ss_pred ceeccCCCchhhCCh-hhccccceeEEEecCCccCCCHHHHhc
Confidence 999999999987654 689999999999999999865544443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-27 Score=233.52 Aligned_cols=442 Identities=22% Similarity=0.226 Sum_probs=306.7
Q ss_pred eeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEec
Q 009672 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (529)
Q Consensus 59 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 138 (529)
++.|++..|-+.....+.....-.|+.|++++| .+... +..+..+++|+.|+++.|.+ ...|....++.+|++++|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~f-p~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSF-PIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccc-ccccC-CchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhee
Confidence 788888888776555454555556999999977 44443 56778889999999999864 567788889999999999
Q ss_pred cCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCC-CCChhHHHHhhccCccchhhhhhhhHH
Q 009672 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLSISSVIFILCSMII 217 (529)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (529)
.++ .....+..+..+.+|+.|+++.+.... .|.-+..+..+..+..++| .+...+...+..+......
T Consensus 99 ~~n-~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~-------- 167 (1081)
T KOG0618|consen 99 KNN-RLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNV-------- 167 (1081)
T ss_pred ccc-hhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhh--------
Confidence 885 677778888899999999999844322 3444555566666666655 1111111111111000000
Q ss_pred HhhhhhhhhcccCCccEEEccCCCCCHHHHHHh-----------------hcCCCCCeEecCCCcCChhhhHhhhcCCCc
Q 009672 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSL-----------------SALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280 (529)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 280 (529)
....+...+.+++. .|++..+.+.......+ ..-++|+.|+.++|.+..... .....+|
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl 243 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNL 243 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccc
Confidence 00001111111122 35555554431111000 112455666666665552221 1123578
Q ss_pred cEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC
Q 009672 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360 (529)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (529)
+.++++++.+.. .|.|+..+.+|+.+....|.+.. .+..+....+|+.|....|.+... +.......+|+.|++..|
T Consensus 244 ~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 244 QYLDISHNNLSN-LPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeeecchhhhhc-chHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhc
Confidence 899999888875 45888889999999998887754 455666678888888888876544 344566788999999999
Q ss_pred CCChhhhhhhcCCC-CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh
Q 009672 361 GISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 361 ~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
.+.......+.... +++.+..+.+++....-..=...+.|+.|++.+|.+++.....+-+.++|+.|++++|.+.....
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 88876665554333 36777777776665421111245678899999999999888888899999999999999988877
Q ss_pred hhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCC
Q 009672 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519 (529)
Q Consensus 440 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 519 (529)
..+.+++.|++|+++|| .++. +|..+..+++|++|...+|.+...+ .+..+++|+.+|++.|.++.-.+.... .
T Consensus 401 s~~~kle~LeeL~LSGN-kL~~-Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~--p 474 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGN-KLTT-LPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEAL--P 474 (1081)
T ss_pred HHHhchHHhHHHhcccc-hhhh-hhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhC--C
Confidence 88899999999999999 7776 5688899999999999999998754 677899999999999999987666544 5
Q ss_pred CCCceecCC
Q 009672 520 LPNLVSFRP 528 (529)
Q Consensus 520 ~~~l~~l~~ 528 (529)
+|+|++|++
T Consensus 475 ~p~LkyLdl 483 (1081)
T KOG0618|consen 475 SPNLKYLDL 483 (1081)
T ss_pred Ccccceeec
Confidence 589998875
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=6.5e-28 Score=214.39 Aligned_cols=431 Identities=23% Similarity=0.237 Sum_probs=282.9
Q ss_pred CHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHH
Q 009672 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124 (529)
Q Consensus 45 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 124 (529)
.+.|+.... ++.+++++|.+.. ..+.+.++..|.+|++++|. +.. .+.+++.+..++.|+.+++.. ..+|
T Consensus 38 ~e~wW~qv~-----l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~-l~~-lp~aig~l~~l~~l~vs~n~l--s~lp 107 (565)
T KOG0472|consen 38 GENWWEQVD-----LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNK-LSQ-LPAAIGELEALKSLNVSHNKL--SELP 107 (565)
T ss_pred hhhhhhhcc-----hhhhhhccCchhh-ccHhhhcccceeEEEeccch-hhh-CCHHHHHHHHHHHhhcccchH--hhcc
Confidence 466766554 8889999998873 44557899999999999984 443 377888999999999999984 6789
Q ss_pred HHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccC
Q 009672 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS 204 (529)
Q Consensus 125 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 204 (529)
..+....+|+.++++.+ .+...+..++.+..|+.++..+++ +.. .+.++..+.++..+++.+|.+....+..+. +
T Consensus 108 ~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~-i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m- 182 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQ-ISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-M- 182 (565)
T ss_pred HHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccc-ccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-H-
Confidence 99999999999999986 566777888899999999988844 443 567888888999999999988765555443 3
Q ss_pred ccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEE
Q 009672 205 ISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 284 (529)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 284 (529)
+.|++|+...+.+.. .|+.++.+.+|..|++..|++...+ .|..+..|.++.
T Consensus 183 -------------------------~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh 234 (565)
T KOG0472|consen 183 -------------------------KRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELH 234 (565)
T ss_pred -------------------------HHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHH
Confidence 455555554444332 3444555555555555555554321 444455555555
Q ss_pred ccCCCCChHHHHh-hcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCC
Q 009672 285 LGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 363 (529)
Q Consensus 285 l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 363 (529)
++.|++.- .|.. ..+++++..|++.+|++.+ .+..++.+.+|++|+++.|.++... ..++++ .|+.|.+.+|.+.
T Consensus 235 ~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 235 VGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccHHHh-hHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCCchH
Confidence 55554432 2222 3345555555555555443 3334444555555555555544322 223333 4444444444222
Q ss_pred hhhh--------------------------------------hhh---cCCCCCcEEECCCCCCCHHHHHHHhc--CCCC
Q 009672 364 DGSL--------------------------------------RKL---AGLSSLKSLNLDARQITDTGLAALTS--LTGL 400 (529)
Q Consensus 364 ~~~~--------------------------------------~~l---~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~L 400 (529)
.+-- ..+ ....+.+.|++++-.++..+.+.|.. -.-.
T Consensus 311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence 1100 001 12345677888887777765555542 2235
Q ss_pred CEEecCCCCCChH-----------------------HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 401 THLDLFGARITDS-----------------------GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 401 ~~L~l~~~~l~~~-----------------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
..++++.|++... .+..+..+++|+.|++++|.+-+. |..++.+..|+.|+++.|
T Consensus 391 t~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~N- 468 (565)
T KOG0472|consen 391 TSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFN- 468 (565)
T ss_pred EEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheeccccc-
Confidence 6677777665432 244556788899999988877654 666777788999999998
Q ss_pred CCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 458 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
.+.. +|..+.....++.+..++|++....+.++.++++|.+||+.+|.+...+.. + ..|++|+.|.+
T Consensus 469 rFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-L--gnmtnL~hLeL 535 (565)
T KOG0472|consen 469 RFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-L--GNMTNLRHLEL 535 (565)
T ss_pred cccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-h--ccccceeEEEe
Confidence 5554 567777777888888888999888888899999999999999977643322 2 25778887754
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.2e-21 Score=211.31 Aligned_cols=402 Identities=21% Similarity=0.178 Sum_probs=220.4
Q ss_pred cHHHHHHHHHHhhhcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHH--hcCCceeEEEecCcccC--chhhhhcc
Q 009672 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIA--SQGSSLLSVDLSGSDVT--DSGLIHLK 78 (529)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~l~~l~l~~~~~~--~~~~~~l~ 78 (529)
|||+.+++.+++++.+...+.....+.... .....+. .....++.+.+.-..+. .....+|.
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~--------------di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAK--------------DICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHH--------------HHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 899999999999887652211111110000 0000000 01123444433322221 12334466
Q ss_pred CCCCCCeEeccCCc-----ccCchhhhhccCCC-CCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCcccccccccccc
Q 009672 79 DCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152 (529)
Q Consensus 79 ~~~~L~~L~l~~~~-----~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 152 (529)
.+++|+.|.+..+. ......+..|..++ +|+.|.+.++.. ..+|..| .+.+|+.|++.++. +...+..+.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~ 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGSK-LEKLWDGVH 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-CccCCcEEECcCcc-ccccccccc
Confidence 77777777775431 01111233344443 577777777653 3445555 46777777777753 444455556
Q ss_pred CCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCc
Q 009672 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKL 232 (529)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 232 (529)
.+++|+.|+++++..+... +.+..+++|+.|++.+|......+.. +..+++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~s--------------------------i~~L~~L 683 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSS--------------------------IQYLNKL 683 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchh--------------------------hhccCCC
Confidence 6777777777765554422 34666777777777765432222222 3334777
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (529)
+.|++++|......|..+ ++++|+.|++++|......+. ...+|+.|+++++.+.. .|..+ .+++|+.|.+.++
T Consensus 684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-ccccccccccccc
Confidence 777777764333333322 567777777777754333222 23467777777776643 33322 4566776666553
Q ss_pred CCCh-------hhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCC
Q 009672 313 GIGD-------EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385 (529)
Q Consensus 313 ~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 385 (529)
.... ..+.....+++|+.|++++|......+..++++++|+.|++++|..-...+... ++++|+.|++++|.
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 2111 011112234677777777776554555566777777888777763222222222 56777777777764
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
.....+. ..++|+.|++++|.++.. |..+..+++|+.|++++|+-....+..+..++.|+.+++++|+.++.
T Consensus 837 ~L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 837 RLRTFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 3222111 235677778877777654 44567777888888877533222344455667777778777765543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=4.3e-19 Score=193.49 Aligned_cols=338 Identities=21% Similarity=0.196 Sum_probs=174.9
Q ss_pred hhccCCCCCCEEEcCCCCc-----cchhHHHHHhCCC-CCCEEeccCccccccccccccCCCcCcEEeccCCcccCcccc
Q 009672 100 EHLRGLSNLTSLSFRRNNA-----ITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173 (529)
Q Consensus 100 ~~~~~l~~L~~L~l~~~~~-----~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 173 (529)
..|..+++|+.|.+..+.. ....+|..|..++ +|+.|.+.+++ ....+..+ ...+|++|++.++ .+.. .+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s-~l~~-L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGS-KLEK-LW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCc-cccc-cc
Confidence 4466677777776644320 1122344444443 46677666653 23333333 3466777777663 2332 33
Q ss_pred ccccCCCCCCeEEccCCC-CChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhc
Q 009672 174 KPLSGLTNLKSLQISCSK-VTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSA 252 (529)
Q Consensus 174 ~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 252 (529)
..+..+++|+.|+++++. +... + . ++.+++|+.|++.+|......+..+.+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~i-p-~--------------------------ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEI-P-D--------------------------LSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcC-C-c--------------------------cccCCcccEEEecCCCCccccchhhhc
Confidence 445566677777776543 2211 0 1 223367777777776544445566666
Q ss_pred CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEE
Q 009672 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (529)
+++|+.|++++|......|..+ .+++|+.|++++|......|. ...+|+.|++.++.+... +..+ .+++|+.|.
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~ 753 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELI 753 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-ccccccccc
Confidence 7777777777664333333322 456677777766643322221 235666777766655432 2111 355666666
Q ss_pred cCCCccC-------hhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCC-CCHHHHHHHhcCCCCCEEe
Q 009672 333 LSDTQVG-------SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLD 404 (529)
Q Consensus 333 l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~ 404 (529)
+..+... ...+.....+++|+.|++++|......+..++++++|+.|++++|. +... +... .+++|+.|+
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~L~sL~~L~ 831 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTGI-NLESLESLD 831 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCCC-CccccCEEE
Confidence 5543211 0001111223566666666664443344556666666666666543 2222 2221 456666666
Q ss_pred cCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCc
Q 009672 405 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482 (529)
Q Consensus 405 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (529)
+++|......+. ...+|+.|++++|.++.. |..+..+++|+.|++++|.++.. ++..+..+++|+.+++++|.
T Consensus 832 Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 832 LSGCSRLRTFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCccccccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence 666532222111 124566666666666543 44555666666666666655554 33344556666666666663
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=3e-18 Score=162.91 Aligned_cols=92 Identities=28% Similarity=0.355 Sum_probs=44.1
Q ss_pred HHhhcCCCCCeEecCCCcCChhh----hHhhhcCCCccEEEccCCCCC------hHHHHhhcCCCCCCEEECCCCCCChh
Q 009672 248 DSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEIT------DECLVHLKGLTNLESLNLDSCGIGDE 317 (529)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~ 317 (529)
..+..+.+|+.++++++.++... +..+...+.++.++++++.+. ...+..+..+++|+.|+++++.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 33444555666666666654432 122334455666666655443 11222344455666666655554432
Q ss_pred hhhhhcCCC---CCCeEEcCCCccC
Q 009672 318 GLVNLTGLC---NLKCLELSDTQVG 339 (529)
Q Consensus 318 ~~~~~~~~~---~L~~L~l~~~~~~ 339 (529)
....+..+. +|+.|++++|.+.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccc
Confidence 332332222 2555555555444
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=8e-18 Score=159.96 Aligned_cols=264 Identities=28% Similarity=0.330 Sum_probs=125.9
Q ss_pred ccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCC------HHHHHH
Q 009672 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT------AACLDS 249 (529)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~ 249 (529)
+..+..|++|+++++.+++.....+... +...+.+++++++++.+. ...+..
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~----------------------l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 76 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASA----------------------LRPQPSLKELCLSLNETGRIPRGLQSLLQG 76 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHH----------------------HhhCCCceEEeccccccCCcchHHHHHHHH
Confidence 3445556666666666655443333222 333355666666665544 122334
Q ss_pred hhcCCCCCeEecCCCcCChhhhHhhhcCC---CccEEEccCCCCChHHH----HhhcCC-CCCCEEECCCCCCChhhhhh
Q 009672 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECL----VHLKGL-TNLESLNLDSCGIGDEGLVN 321 (529)
Q Consensus 250 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~~~~ 321 (529)
+..+++|+.|++++|.+....+..+..+. +|++|++++|.+.+... ..+..+ ++|+.|++.+|.++.....
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~- 155 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE- 155 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH-
Confidence 44555666666666655433333333222 25555555555542111 122333 4555555555544311111
Q ss_pred hcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhh----hhhcCCCCCcEEECCCCCCCHHHHH----H
Q 009672 322 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----A 393 (529)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~ 393 (529)
.....+..++.|+.|++++|.+.+... ..+..+++|+.|++++|.+.+.... .
T Consensus 156 -------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 156 -------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred -------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 011222333444444444444442211 1223334555555555555433222 2
Q ss_pred HhcCCCCCEEecCCCCCChHHHHhhh-----cCCCCcEEEccCCCCChhhh----hhccCCCCCCeEecCCCCCCChhH-
Q 009672 394 LTSLTGLTHLDLFGARITDSGAAYLR-----NFKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKT- 463 (529)
Q Consensus 394 l~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~- 463 (529)
+..+++|+.|++++|.+++.....+. ..+.|++|++++|.+++.+. ..+..+++|+++++++| .+++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~ 295 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGA 295 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHH
Confidence 33455666666666666553332221 13566666666666653332 23344466777777776 566442
Q ss_pred ---HHHHhCC-CCCCeeeccCCc
Q 009672 464 ---LELISGL-TGLVSLNVSNSR 482 (529)
Q Consensus 464 ---~~~l~~l-~~L~~L~l~~~~ 482 (529)
...+... +.|+.|++.+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCC
Confidence 2233344 567777776665
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=4.4e-21 Score=170.88 Aligned_cols=138 Identities=25% Similarity=0.228 Sum_probs=115.7
Q ss_pred HHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCC
Q 009672 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131 (529)
Q Consensus 52 ~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 131 (529)
+..-++..+.+.|..|+|+...+.+|+.+++||+|||++| .++.+++..|+.+++|-.|-+-+++.+++.....|.++.
T Consensus 62 P~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 3345688999999999999999999999999999999997 799999999999999988888885558888888999999
Q ss_pred CCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCC
Q 009672 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (529)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 191 (529)
.|+.|.+.-|.........+..+++|..|.+.+ +.+....-..+..+..++.+.+..|.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCc
Confidence 999999887766656667888999999999987 55555544577788888888887765
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-19 Score=161.18 Aligned_cols=279 Identities=22% Similarity=0.226 Sum_probs=201.0
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccC-CCCChHHHHhhcCCCCCCEEE
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 308 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 308 (529)
+.-..+++..|.++...+.+|+.+++|+.|++++|.++...+++|..++.+-+|-+.+ |++++.....|..+..++-|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4667889999999998888999999999999999999998899998888887777766 788876666788888898888
Q ss_pred CCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCC-hhh-----------hhhhcCCCCC
Q 009672 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DGS-----------LRKLAGLSSL 376 (529)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~-----------~~~l~~~~~L 376 (529)
+.-|.+.-+....|..++++..|.+.+|.+.......+..+.+++.+.+..|.+. +.. +..++++...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 8888777777788888899988888888776655555666677777776655421 111 1112222222
Q ss_pred cEEECCCCCCCHHHHHHHhc-CCCCCEEecCCCCCC-hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecC
Q 009672 377 KSLNLDARQITDTGLAALTS-LTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 454 (529)
.-..+.+..+.......+.. ...+..--...|... .-+...|..+++|++|++++|+++.+-..+|.+...+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 22222233333222222221 111111111223222 2345567888999999999999988888888888899999999
Q ss_pred CCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 455 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
.| .+....-.+|.++..|+.|++++|+++...+.+|+.+.+|.+|.+-.|++..
T Consensus 307 ~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 307 RN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred cc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 98 7887777788888999999999999988888888888899999998886654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3.1e-15 Score=151.91 Aligned_cols=244 Identities=22% Similarity=0.141 Sum_probs=162.0
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|+.|++.+|.+... +. ..++|++|++++|.++..+ . ..++|+.|++++|.+.. .+. ..++|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls~N~L~~-Lp~---lp~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCccc-C---cccccceeeccCCchhh-hhh---chhhcCEEEC
Confidence 4678888888877653 21 3578888888888877542 2 24578888888887753 332 2356778888
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
.+|.+..... ..++|+.|++++|.+..... ...+|+.|.+++|.+..... + ..+|+.|++++|.+...
T Consensus 290 s~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 290 FGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASL 357 (788)
T ss_pred cCCccccccc----cccccceeECCCCccccCCC----CcccccccccccCccccccc--c--ccccceEecCCCccCCC
Confidence 8887664321 24678888888887765321 12457777888877765321 1 24688888888888764
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+. ..++|+.|++.+|++...+. ...+|+.|++++|.++... .. .++|+.|++++| .++.. |..
T Consensus 358 P~----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP-~l---~s~L~~LdLS~N-~LssI-P~l--- 420 (788)
T PRK15387 358 PT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP-VL---PSELKELMVSGN-RLTSL-PML--- 420 (788)
T ss_pred CC----CCcccceehhhccccccCcc----cccccceEEecCCcccCCC-Cc---ccCCCEEEccCC-cCCCC-Ccc---
Confidence 21 23567788888887776432 2357888888888877532 11 257888888888 66653 322
Q ss_pred CCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHh
Q 009672 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 515 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 515 (529)
..+|+.|++++|.+... |..+..+++|+.|++++|+++......+
T Consensus 421 ~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 24677888888888753 4567778888888888888887655544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3.5e-15 Score=151.52 Aligned_cols=265 Identities=21% Similarity=0.128 Sum_probs=173.4
Q ss_pred CcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccE
Q 009672 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234 (529)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 234 (529)
..-..|+++++ .++. .|..+. ++|+.|++..|+++... .. .++|++
T Consensus 201 ~~~~~LdLs~~-~Lts-LP~~l~--~~L~~L~L~~N~Lt~LP-----~l-------------------------p~~Lk~ 246 (788)
T PRK15387 201 NGNAVLNVGES-GLTT-LPDCLP--AHITTLVIPDNNLTSLP-----AL-------------------------PPELRT 246 (788)
T ss_pred CCCcEEEcCCC-CCCc-CCcchh--cCCCEEEccCCcCCCCC-----CC-------------------------CCCCcE
Confidence 34556777763 3442 344443 36777888777776421 11 167888
Q ss_pred EEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCC
Q 009672 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314 (529)
Q Consensus 235 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (529)
|++++|.++.. +. ..++|+.|++.+|.+.... . ...+|+.|++++|.+.. .|. ..++|+.|++++|.+
T Consensus 247 LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L 314 (788)
T PRK15387 247 LEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHLP-A---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQL 314 (788)
T ss_pred EEecCCccCcc-cC---cccccceeeccCCchhhhh-h---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcc
Confidence 88888877653 21 2457778888877765422 2 22467788888887763 222 246788888888876
Q ss_pred ChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHH
Q 009672 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394 (529)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 394 (529)
..... ....|+.|++++|.++..+ . ...+|+.|++++|.+..... ...+|+.|++.+|.+...+ .
T Consensus 315 ~~Lp~----lp~~L~~L~Ls~N~L~~LP-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP-~-- 379 (788)
T PRK15387 315 ASLPA----LPSELCKLWAYNNQLTSLP-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP-A-- 379 (788)
T ss_pred ccCCC----CcccccccccccCcccccc-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccCc-c--
Confidence 64321 1246777888887775432 1 12478888888887775332 1356788888888877542 1
Q ss_pred hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCC
Q 009672 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474 (529)
Q Consensus 395 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 474 (529)
..++|+.|++++|+++..+. ..++|+.|++++|.++.. +.. ..+|+.|++++| .++. +|..+.++++|+
T Consensus 380 -l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~N-qLt~-LP~sl~~L~~L~ 448 (788)
T PRK15387 380 -LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSL-PML---PSGLLSLSVYRN-QLTR-LPESLIHLSSET 448 (788)
T ss_pred -cccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccC-cccc-cChHHhhccCCC
Confidence 23578888998888876432 236788999999888754 221 246888999998 6775 567788889999
Q ss_pred eeeccCCccChhHHHhc
Q 009672 475 SLNVSNSRITSAGLRHL 491 (529)
Q Consensus 475 ~L~l~~~~~~~~~~~~~ 491 (529)
.|++++|++++..+..+
T Consensus 449 ~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 449 TVNLEGNPLSERTLQAL 465 (788)
T ss_pred eEECCCCCCCchHHHHH
Confidence 99999999988766554
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.57 E-value=1.5e-14 Score=127.85 Aligned_cols=192 Identities=23% Similarity=0.305 Sum_probs=104.1
Q ss_pred CCCCCCeEEcCCCccChhhhh----hccCCCCCCeEeccCCCCChhhhhh-------------hcCCCCCcEEECCCCCC
Q 009672 324 GLCNLKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDARQI 386 (529)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~ 386 (529)
.+|+|+.+++++|.++...+. .++++..|+.|.+.+|++....... .+.-+.|+++.+.+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 344555555555544433322 2234555555555555554433222 12345666666666666
Q ss_pred CHHHH----HHHhcCCCCCEEecCCCCCChHH----HHhhhcCCCCcEEEccCCCCChhhhhh----ccCCCCCCeEecC
Q 009672 387 TDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLS 454 (529)
Q Consensus 387 ~~~~~----~~l~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~ 454 (529)
.+.+. ..|...+.|+.+.+..|.|...+ ...+..|++|+.|++..|.++..+..+ +..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 54332 23445566777777666555332 334566777777777777666555443 3344667777777
Q ss_pred CCCCCChhHHHHH----h-CCCCCCeeeccCCccChhHHHh----ccCCCCCcEEeecCccC--ChhHHHHhh
Q 009672 455 QNCNLTDKTLELI----S-GLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLESCKV--TANDIKRLQ 516 (529)
Q Consensus 455 ~~~~l~~~~~~~l----~-~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~--~~~~~~~l~ 516 (529)
+| .+.......+ . ..|+|+.|.+.+|.++...... +...|.|+.|++++|++ .+..+..+.
T Consensus 250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred cc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 77 5554433222 2 3567777777777766544322 23356777777777777 334444433
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=8e-14 Score=142.63 Aligned_cols=256 Identities=20% Similarity=0.214 Sum_probs=183.1
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
.+...|++++..++.. |..+ .+.|+.|++++|.++..+ ..+ .++|++|++++|.+.. .|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~LtsLP-~~l--~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTI-PACI--PEQITTLILDNNELKSLP-ENL--QGNIKTLYANSNQLTS-IPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCcCC-hhh--ccCCCEEECCCCcccc-CChhh--hccccEEEC
Confidence 4567899988877753 3323 257999999999888643 333 2589999999998874 34333 257999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+..+ +..+ ..+|+.|++++|.+... +..+ .++|+.|++++|.+.... ..+. ++|+.|++++|.+...
T Consensus 249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP-~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRITEL-PERL--PSALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLP-AHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCcC-ChhH--hCCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCc-ccch--hhHHHHHhcCCccccC
Confidence 99987753 3333 25799999999988753 3222 258999999999887643 2222 4788999999988864
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+ ..+ .++|+.|++++|.++..+. .+ +++|+.|++++|++... +..+. ++|++|++++| .++... ..+.
T Consensus 320 P-~~l--~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~L-P~~lp--~~L~~LdLs~N-~Lt~LP-~~l~- 387 (754)
T PRK15370 320 P-ETL--PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVL-PETLP--PTITTLDVSRN-ALTNLP-ENLP- 387 (754)
T ss_pred C-ccc--cccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcC-Chhhc--CCcCEEECCCC-cCCCCC-HhHH-
Confidence 2 222 3689999999998887543 23 37999999999998754 33332 68999999999 777643 3333
Q ss_pred CCCCCeeeccCCccChhH---HHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 470 LTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+.|+.|++++|.+.... +.....++++..|++.+|+++...++.++
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~ 436 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQ 436 (754)
T ss_pred -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHH
Confidence 46999999999987542 22334568899999999999887776654
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.51 E-value=2.4e-14 Score=129.41 Aligned_cols=301 Identities=27% Similarity=0.426 Sum_probs=141.0
Q ss_pred CceeEEEecCcc-cCchhhhhc-cCCCCCCeEeccCCcccCchhhhhc-cCCCCCCEEEcCCCCccchhHHHHHh-CCCC
Q 009672 57 SSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLIN 132 (529)
Q Consensus 57 ~~l~~l~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~ 132 (529)
..++.+.++|.. +.+.....+ .++|+++.|.+.+|.++++.....+ ..|++|++|++..|..+++...+.+. .|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356677776642 222222222 4667777777777766666555555 34677777777776666665555333 5667
Q ss_pred CCEEeccCcccccc-ccc-cccCCCcCcEEeccCCcccCcccccccc-CCCCCCeEEccC-CCCChhHHHHhhccCccch
Q 009672 133 LVKLDLERCTRIHG-GLV-NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISC-SKVTDSGIAYLKGLSISSV 208 (529)
Q Consensus 133 L~~L~l~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~~~ 208 (529)
|++++++.|+.+.+ +.. ...++..++.+...+|............ .+..+-++++.. +.+++.+...+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~------ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC------ 291 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh------
Confidence 77777766665444 121 2244455555555555444433332222 334444444332 2334433222211
Q ss_pred hhhhhhhHHHhhhhhhhhcccCCccEEEccCC-CCCHHHHHHhh-cCCCCCeEecCCCc-CChhhhHhhhcCCCccEEEc
Q 009672 209 IFILCSMIIRLFCLHVFLTSLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL 285 (529)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l 285 (529)
.+..|+.++.+++ .+.+.....++ ++++|+.+.++.|+ ++......++
T Consensus 292 -------------------~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~---------- 342 (483)
T KOG4341|consen 292 -------------------GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG---------- 342 (483)
T ss_pred -------------------hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----------
Confidence 1244555555544 22222222332 34455555554443 2221222222
Q ss_pred cCCCCChHHHHhhcCCCCCCEEECCCCCCChhh-h-hhhcCCCCCCeEEcCCCc-cChhhhhhcc----CCCCCCeEecc
Q 009672 286 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-L-VNLTGLCNLKCLELSDTQ-VGSSGLRHLS----GLTNLESINLS 358 (529)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~----~~~~L~~L~l~ 358 (529)
.+++.|+.+++..+...... . ..-.+++.|+.+.+++|. +++.+...+. ....++.+.++
T Consensus 343 -------------rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 343 -------------RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred -------------cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 23455555555554322111 1 111234555555555543 2333222222 23455666666
Q ss_pred CCC-CChhhhhhhcCCCCCcEEECCCC-CCCHHHHHHHh-cCCCCCEEec
Q 009672 359 FTG-ISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT-SLTGLTHLDL 405 (529)
Q Consensus 359 ~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l 405 (529)
++. +++.....+..|++|+.+++.++ .++..+...+. ++|+++...+
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 653 33444455556666666665553 22333333333 5566555433
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.48 E-value=1.5e-13 Score=121.57 Aligned_cols=159 Identities=26% Similarity=0.373 Sum_probs=73.5
Q ss_pred hcCCCCCCEEECCCCCCChhhhhh-------------hcCCCCCCeEEcCCCccChhhh----hhccCCCCCCeEeccCC
Q 009672 298 LKGLTNLESLNLDSCGIGDEGLVN-------------LTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFT 360 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~ 360 (529)
+.++..|++|.+.+|++....... .+.-++|+.+....|++.+.+. ..+..++.|+.+.+..|
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN 195 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN 195 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc
Confidence 344566666666666554332222 1223455555555555443322 22334455555555555
Q ss_pred CCChhhh----hhhcCCCCCcEEECCCCCCCHHHHHH----HhcCCCCCEEecCCCCCChHHHHhh-----hcCCCCcEE
Q 009672 361 GISDGSL----RKLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSL 427 (529)
Q Consensus 361 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L 427 (529)
.+..... ..+..|++|+.|++++|.++..+... ++.+++|+.+++++|.+...+...+ ...|+|+++
T Consensus 196 ~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl 275 (382)
T KOG1909|consen 196 GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVL 275 (382)
T ss_pred cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCcee
Confidence 4433222 23345555555555555555433222 2244455555555555544333222 234555555
Q ss_pred EccCCCCChhhhhhc----cCCCCCCeEecCCC
Q 009672 428 EICGGGLTDAGVKHI----KDLSSLTLLNLSQN 456 (529)
Q Consensus 428 ~l~~~~l~~~~~~~~----~~~~~L~~L~l~~~ 456 (529)
.+.+|.++......+ ...|.|++|+|++|
T Consensus 276 ~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 276 ELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 555555544332221 22345555555555
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=3e-13 Score=138.46 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=46.2
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|+.|++++|.+... +..+. +.|+.|++++|.+... |..+. .+|+.|++++|.+.. .|..+ .++|+.|++
T Consensus 220 ~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLTSI-PATLP--DTIQEMELSINRITEL-PERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccccC-Chhhh--ccccEEECcCCccCcC-ChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEEC
Confidence 4566666666665532 22221 3566666666665532 22222 356666666665542 23222 135556666
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccC
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVG 339 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 339 (529)
++|.+.... ..+ .++|+.|++++|.+.
T Consensus 291 s~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 291 YDNSIRTLP-AHL--PSGITHLNVQSNSLT 317 (754)
T ss_pred CCCccccCc-ccc--hhhHHHHHhcCCccc
Confidence 555444321 111 124455555555443
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.30 E-value=1.5e-12 Score=118.05 Aligned_cols=306 Identities=30% Similarity=0.439 Sum_probs=213.7
Q ss_pred ccCc--cceeccCCCCCCCHHHHHHHHhcCCceeEEEecCc-ccCchhhhhc-cCCCCCCeEeccCCcccCchhhhhc-c
Q 009672 29 RDCA--LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-R 103 (529)
Q Consensus 29 ~~~~--l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~ 103 (529)
.+|. ++.+.+.++.++-+.-.......||++.+|.+.++ .+++.....+ ..|+.|+.|++..|..+++.....+ .
T Consensus 134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 3454 88888988888888888888888999999999995 5666666666 5788999999999888887777754 5
Q ss_pred CCCCCCEEEcCCCCccchhHHH-HHhCCCCCCEEeccCcccccccc--ccccCCCcCcEEeccCCcccCcccccccc-CC
Q 009672 104 GLSNLTSLSFRRNNAITAQGMK-AFAGLINLVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GL 179 (529)
Q Consensus 104 ~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~ 179 (529)
.|++|++|+++.|.-+++.... .+.+++.++.+..++|....... ..-+.++-+.++++..|+.+++.....+. .+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 7999999999998866653333 34467888888888875443332 11245667777788888888877655554 57
Q ss_pred CCCCeEEccCC-CCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCC-CCHHHHHHhh-cCCCC
Q 009672 180 TNLKSLQISCS-KVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTAACLDSLS-ALGSL 256 (529)
Q Consensus 180 ~~L~~L~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L 256 (529)
..|+.+..+++ .+++.....+. ..+.+|+.+.+.+|+ +++.....++ +++.|
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg-------------------------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALG-------------------------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHh-------------------------cCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 88888888764 45555544442 234889999999885 5555444454 57899
Q ss_pred CeEecCCCcCChhh-hHhh-hcCCCccEEEccCCCC-ChHHHHhh----cCCCCCCEEECCCCC-CChhhhhhhcCCCCC
Q 009672 257 FYLNLNRCQLSDDG-CEKF-SKIGSLKVLNLGFNEI-TDECLVHL----KGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 328 (529)
Q Consensus 257 ~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~~~~-~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L 328 (529)
+.+++..+...... ...+ ..++.|+.+.++++.. ++.....+ .....++.+.++++. +++.....+..+++|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 99999888654322 2223 2678899999987743 33322222 346788999999984 445566777889999
Q ss_pred CeEEcCCCc-cChhhhh-hccCCCCCCeEeccC
Q 009672 329 KCLELSDTQ-VGSSGLR-HLSGLTNLESINLSF 359 (529)
Q Consensus 329 ~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~ 359 (529)
+.+++.++. ++..... .-..+|+++...+..
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 999998874 3333332 334677777665443
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.3e-12 Score=111.51 Aligned_cols=264 Identities=22% Similarity=0.233 Sum_probs=148.9
Q ss_pred CCcHHHHHHHHHHhhhcccCChhhhh-hhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccC
Q 009672 1 MLPRDISQQIFNELVYSRCLTEVSLE-AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79 (529)
Q Consensus 1 ~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~ 79 (529)
.||.|+...||.-+.+...+...... .|.+|. ..-+..+++|+.+..+.......+.+
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~---------------------~de~lW~~lDl~~r~i~p~~l~~l~~ 158 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLA---------------------SDESLWQTLDLTGRNIHPDVLGRLLS 158 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcc---------------------ccccceeeeccCCCccChhHHHHHHh
Confidence 47889999999887776655433322 233332 22234555555554443222222100
Q ss_pred CCCCCeEeccCCcccCc-hhhhhccCC-CCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcC
Q 009672 80 CSNLQSLDFNFCIQISD-GGLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157 (529)
Q Consensus 80 ~~~L~~L~l~~~~~~~~-~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 157 (529)
..+..+.+... ...+ ...+.+.-+ ..|++|+|+............+..|.+|+.|.+++...-......+++-.+|
T Consensus 159 -rgV~v~Rlar~-~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L 236 (419)
T KOG2120|consen 159 -RGVIVFRLARS-FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL 236 (419)
T ss_pred -CCeEEEEcchh-hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence 01122222111 1111 111222211 2466666666553333344455566677777766653222223455666777
Q ss_pred cEEeccCCcccCcccccc-ccCCCCCCeEEccCCCCChhHHHHh-hccCccchhhhhhhhHHHhhhhhhhhcccCCccEE
Q 009672 158 ESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYL-KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLL 235 (529)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 235 (529)
+.|+++.|+.++....+- +.+|+.|.+|+++++.+....+..+ ..+ -++|..|
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi-------------------------se~l~~L 291 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI-------------------------SETLTQL 291 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh-------------------------chhhhhh
Confidence 777777777777555543 4578888888888887765544332 222 1678888
Q ss_pred EccCCC--C-CHHHHHHhhcCCCCCeEecCCCc-CChhhhHhhhcCCCccEEEccCCCCC-hHHHHhhcCCCCCCEEECC
Q 009672 236 NLEGCP--V-TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLD 310 (529)
Q Consensus 236 ~l~~~~--~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 310 (529)
+++|+. + ..........+++|..||+++|. ++......+.+++.|++|.++.|..- ....-.+...|.|.+|++.
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence 888873 2 22233334578999999998875 44445566778889999998876432 2222235678899999998
Q ss_pred CC
Q 009672 311 SC 312 (529)
Q Consensus 311 ~~ 312 (529)
++
T Consensus 372 g~ 373 (419)
T KOG2120|consen 372 GC 373 (419)
T ss_pred cc
Confidence 87
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.3e-13 Score=119.97 Aligned_cols=212 Identities=25% Similarity=0.273 Sum_probs=142.3
Q ss_pred hcCCCCCCEEECCCCCCChhhh-hhhcCCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhh-hcCC
Q 009672 298 LKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRK-LAGL 373 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~ 373 (529)
-+++.+|+.+.+.++....... .....|++++.|+++.|-+.... ......+|+|+.|+++.|.+....... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4567889999998886654433 23456889999999988665432 344567889999999888654321111 1145
Q ss_pred CCCcEEECCCCCCCHHHHHHH-hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhh-hhhccCCCCCCeE
Q 009672 374 SSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLL 451 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L 451 (529)
++|+.|.++.|.++......+ ..+|+|+.|++.+|............+..|++|+|++|++.+.. ....+.+|.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 788888898888886544433 47888888888888432222223345678888899888776543 2345677888888
Q ss_pred ecCCCCCCChhHH-H-----HHhCCCCCCeeeccCCccChh-HHHhccCCCCCcEEeecCccCChh
Q 009672 452 NLSQNCNLTDKTL-E-----LISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 452 ~l~~~~~l~~~~~-~-----~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+++.+ .+.+... + ....+++|+.|++..|++.+- ....+..+++|+.+.+-.|.++.+
T Consensus 277 nls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 88888 6665532 1 234578888888888887442 224555667888888888877653
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.2e-11 Score=105.57 Aligned_cols=196 Identities=22% Similarity=0.245 Sum_probs=125.8
Q ss_pred CCCeEEcCCCccChhh-hhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCC-CCCHHHHH-HHhcCCCCCEE
Q 009672 327 NLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA-ALTSLTGLTHL 403 (529)
Q Consensus 327 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~~L~~L 403 (529)
.|+.++++...++... -..++.|..|+.+.+.++.+++.....++.-..|+.++++.+ .++..... .+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666665554433 233455666777777777776666666666667777777663 44443332 34577777777
Q ss_pred ecCCCCCChHHH-Hhh-hcCCCCcEEEccCC--CCChhhhhh-ccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeec
Q 009672 404 DLFGARITDSGA-AYL-RNFKNLRSLEICGG--GLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 478 (529)
Q Consensus 404 ~l~~~~l~~~~~-~~~-~~~~~L~~L~l~~~--~l~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 478 (529)
+++-|.+..... ..+ .--+.|+.|+++|+ ++....... ...+|+|.+||+++|..++......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777665443221 112 22357777888775 233333333 3568999999999998888888888899999999999
Q ss_pred cCCccChh-HHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCce
Q 009672 479 SNSRITSA-GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 524 (529)
Q Consensus 479 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~ 524 (529)
+.|+.... ..-.+...|+|.+|++.+|-- .-..+.+. +++|+|+
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vs-dt~mel~~-e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCVS-DTTMELLK-EMLSHLK 390 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccccC-chHHHHHH-HhCcccc
Confidence 99975442 224567889999999999832 22344444 5667765
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.3e-11 Score=112.73 Aligned_cols=141 Identities=17% Similarity=0.053 Sum_probs=61.8
Q ss_pred HhcCCceeEEEecCcccCchhh-hh-ccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCC
Q 009672 53 ASQGSSLLSVDLSGSDVTDSGL-IH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130 (529)
Q Consensus 53 ~~~~~~l~~l~l~~~~~~~~~~-~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 130 (529)
...+++++.|||++|-+....+ .. ..++|+|+.|+++.|..........-..+++|+.|.+++|..-..........|
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 3445555555555554431111 11 245555555555554211111111112344555555555553222233333455
Q ss_pred CCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCC
Q 009672 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193 (529)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 193 (529)
|+|+.|.++.|...........-+..|++|++++++.+........+.++.|+.|+++.++++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 555555555543221122222334455555555544444333344445555555555555444
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=8.3e-13 Score=104.78 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=91.4
Q ss_pred CCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCc
Q 009672 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (529)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 158 (529)
++.++.+|.+++| ++... +..+..+.+|+.|+++.|+. ..+|..++.+++|++|++.-+ .+...+..|+.+|.|+
T Consensus 31 ~~s~ITrLtLSHN-Kl~~v-ppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVV-PPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccC-ceeec-CCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 4445555666655 33322 44555666666666666653 445666666666666666543 3445555666666666
Q ss_pred EEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEcc
Q 009672 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLE 238 (529)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 238 (529)
+||+.+++--....+..|..+..|+-|.+++|.+.- +|..++.+++|+.|.+.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~---------------------------lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI---------------------------LPPDVGKLTNLQILSLR 158 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCccc---------------------------CChhhhhhcceeEEeec
Confidence 666666444444455556666666666666665432 11223344677777776
Q ss_pred CCCCCHHHHHHhhcCCCCCeEecCCCcCChhh
Q 009672 239 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 270 (529)
Q Consensus 239 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 270 (529)
.+.+.+ .|..++.+.+|+.|.+.+|+++..+
T Consensus 159 dndll~-lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 159 DNDLLS-LPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cCchhh-CcHHHHHHHHHHHHhcccceeeecC
Confidence 666554 3455666667777777777665433
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.11 E-value=4.2e-13 Score=106.44 Aligned_cols=159 Identities=24% Similarity=0.309 Sum_probs=93.7
Q ss_pred CCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEE
Q 009672 324 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 403 (529)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 403 (529)
.+...+.|.+++|.++... ..++.+.+|+.|++++|.+.+ .+..++.+++|+.|++.-|.+... +.+|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vp-pnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVP-PNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecC-CcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence 3455566666776665443 334566667777777666655 334556666667666666665544 5566666666666
Q ss_pred ecCCCCCCh-HHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCc
Q 009672 404 DLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 482 (529)
Q Consensus 404 ~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 482 (529)
++.+|.+.. ..|.-|..+..|+-|+++.|.+.-. +..++++++|+.|.+.+| .+.. .|..++.+++|++|.+.+|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdn-dll~-lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDN-DLLS-LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccC-chhh-CcHHHHHHHHHHHHhcccce
Confidence 666665543 2233344455666666666665432 445666666666666666 3333 45556666666666666666
Q ss_pred cChhHH
Q 009672 483 ITSAGL 488 (529)
Q Consensus 483 ~~~~~~ 488 (529)
++-..+
T Consensus 185 l~vlpp 190 (264)
T KOG0617|consen 185 LTVLPP 190 (264)
T ss_pred eeecCh
Confidence 654443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=6.1e-11 Score=98.70 Aligned_cols=130 Identities=26% Similarity=0.317 Sum_probs=48.4
Q ss_pred cCCCCCcEEECCCCCCCHHHHHHHh-cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCC
Q 009672 371 AGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 449 (529)
.++.++++|++.++.++.. ..++ .+.+|+.|++++|.++... .+..++.|++|++++|.++.........+|+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3556788888888888773 3454 5678888888888887753 456678888888888888776432223578888
Q ss_pred eEecCCCCCCChhH-HHHHhCCCCCCeeeccCCccChhHH---HhccCCCCCcEEeecCc
Q 009672 450 LLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESC 505 (529)
Q Consensus 450 ~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~ 505 (529)
+|++++| .+.+.. ...+..+++|+.|++.+|++..... ..+..+|+|+.||-..-
T Consensus 92 ~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 8888888 555432 2456678888888888888764322 34566788888775543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=4.2e-11 Score=99.68 Aligned_cols=129 Identities=29% Similarity=0.378 Sum_probs=49.9
Q ss_pred cCCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc
Q 009672 347 SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425 (529)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 425 (529)
.++..+++|++.++.++.+ ..++ .+.+|+.|++++|.+... ..+..++.|+.|++++|.++.........+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3445688888888888763 3454 467888999999888873 4677788889999999888876543335688899
Q ss_pred EEEccCCCCChhh-hhhccCCCCCCeEecCCCCCCChh---HHHHHhCCCCCCeeeccC
Q 009672 426 SLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSN 480 (529)
Q Consensus 426 ~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~ 480 (529)
+|++++|.+.+.. ...+..+++|+.|++.+|| ++.. -...+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 9999888876643 2456678889999999885 3322 233566788888887543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=7.4e-11 Score=102.48 Aligned_cols=128 Identities=26% Similarity=0.330 Sum_probs=74.1
Q ss_pred CCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEec
Q 009672 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 453 (529)
+.|+++++++|.++.. ...+.-.|.++.|+++.|.+..... ++.+++|+.|++++|.++...... ..+.++++|.+
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhH-hhhcCEeeeeh
Confidence 4566666666666554 3444555666666666666665443 445666666666666665442221 23456666666
Q ss_pred CCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH-HhccCCCCCcEEeecCccCC
Q 009672 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 454 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 508 (529)
++| .+.+ ..+++.+-+|..|++++|++..... .+++++|+|+.+.+.+|++.
T Consensus 360 a~N-~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQN-KIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhh-hHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 666 3333 3445555666666666666654333 45566666666666666554
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=1.6e-10 Score=120.57 Aligned_cols=129 Identities=21% Similarity=0.192 Sum_probs=83.4
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcc-cCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
.+|++.+.++.+... ..-..++.|++|-+.++.. +.....+.|..++.|++|||++|.. -..+|..++.+-+||+|
T Consensus 524 ~~rr~s~~~~~~~~~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhc--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcc
Confidence 466676666655321 1113555777777776642 4444455577788888888887663 34677788888888888
Q ss_pred eccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCC
Q 009672 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (529)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 191 (529)
+++.+ .+...|..++++..|.+|++..+...... +.....+.+|++|.+....
T Consensus 601 ~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCC-CccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 88775 45566677777788888887765444432 3444457788888876543
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.98 E-value=1.2e-09 Score=93.79 Aligned_cols=245 Identities=18% Similarity=0.201 Sum_probs=123.6
Q ss_pred HHhhcCCCCCeEecCCCcCChhhhHhhh----cCCCccEEEccCC---CCChHHHHhhcCCCCCCEEECCCCCCChhhhh
Q 009672 248 DSLSALGSLFYLNLNRCQLSDDGCEKFS----KIGSLKVLNLGFN---EITDECLVHLKGLTNLESLNLDSCGIGDEGLV 320 (529)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 320 (529)
+.+.-+..+..+++++|.+......+++ +..+|+..+++.- ...+..+..+ .....
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L-----------------~~Ll~ 86 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNL-----------------VMLLK 86 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHH-----------------HHHHH
Confidence 3344466777777777777665544443 3345555555431 1111111111 01122
Q ss_pred hhcCCCCCCeEEcCCCccChhhh----hhccCCCCCCeEeccCCCCChhhhhh-------------hcCCCCCcEEECCC
Q 009672 321 NLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDA 383 (529)
Q Consensus 321 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~ 383 (529)
++..||+|+.+++++|.++...+ ..+++.+.|..|.+.+|++......- .++-+.|+.+.+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 33344445555554444433222 23334445555555555444322111 12345677777766
Q ss_pred CCCCHHHH----HHHhcCCCCCEEecCCCCCChHHHH-----hhhcCCCCcEEEccCCCCChhhhhhcc----CCCCCCe
Q 009672 384 RQITDTGL----AALTSLTGLTHLDLFGARITDSGAA-----YLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTL 450 (529)
Q Consensus 384 ~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~-----~~~~~~~L~~L~l~~~~l~~~~~~~~~----~~~~L~~ 450 (529)
|.+...+. ..+..-.+|+.+.+..|.|...+.. .++.+.+|+.|++..|.++..+..+++ ..+.|++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 66644222 1222334677777777766544322 225667777777777777666554443 2355677
Q ss_pred EecCCCCCCChhHHH----HHh--CCCCCCeeeccCCccChhH-----HHhc--cCCCCCcEEeecCccCChh
Q 009672 451 LNLSQNCNLTDKTLE----LIS--GLTGLVSLNVSNSRITSAG-----LRHL--KPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 451 L~l~~~~~l~~~~~~----~l~--~l~~L~~L~l~~~~~~~~~-----~~~~--~~~~~L~~L~l~~~~~~~~ 510 (529)
|.+.+| -++..... .+. ..|+|..|-...|...+.. ...+ ..+|-|..+.+.+|++.+.
T Consensus 247 L~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 247 LRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred ccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 777777 44433222 222 2567777777766543211 1222 4567777777788877654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=5.8e-10 Score=97.04 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=94.8
Q ss_pred CCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEE
Q 009672 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428 (529)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 428 (529)
...|+++++++|.++.+ ..++.-.|.++.|+++.|.+... +.++.+++|+.|++++|.++... .+-.++-+.++|.
T Consensus 283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence 35678888888877653 33455567888888888888763 44777888888888888776643 3345677888888
Q ss_pred ccCCCCChhhhhhccCCCCCCeEecCCCCCCChh-HHHHHhCCCCCCeeeccCCccChh
Q 009672 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 429 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
+++|.+.+. ..+..+-+|..||+++| ++... -...++++|+|+.+.+.+|++.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888877543 34566778888888888 66554 245677888999999998887753
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.87 E-value=1e-08 Score=88.11 Aligned_cols=243 Identities=16% Similarity=0.170 Sum_probs=132.8
Q ss_pred ccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCC---CCHHHH-----
Q 009672 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP---VTAACL----- 247 (529)
Q Consensus 176 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~----- 247 (529)
+..+..+.++++++|.|.......+... +.+-.+|+..+++.-. ..+..+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~----------------------ia~~~~L~vvnfsd~ftgr~kde~~~~L~~ 83 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNV----------------------IANVRNLRVVNFSDAFTGRDKDELYSNLVM 83 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHH----------------------HhhhcceeEeehhhhhhcccHHHHHHHHHH
Confidence 3446677777777777766655555443 3333566666665431 122222
Q ss_pred --HHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhh------
Q 009672 248 --DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL------ 319 (529)
Q Consensus 248 --~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------ 319 (529)
.++..||+|+.++++.|.+....++. ....+++.+.|.+|.+.+|++..+..
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~--------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigka 143 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEE--------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA 143 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchH--------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHH
Confidence 23345556666666655544332221 12234444555555555554432211
Q ss_pred -------hhhcCCCCCCeEEcCCCccChhhh----hhccCCCCCCeEeccCCCCChhhhh-----hhcCCCCCcEEECCC
Q 009672 320 -------VNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLR-----KLAGLSSLKSLNLDA 383 (529)
Q Consensus 320 -------~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~ 383 (529)
...+.-|.|+++....|++..-.. ..+....+|+.+.+..|+|...+.. .+..+.+|+.|++++
T Consensus 144 l~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 144 LFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred HHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 122334677777777776543222 2223335778888888877654332 233678888888888
Q ss_pred CCCCHHHHHHH----hcCCCCCEEecCCCCCChHHHHhh------hcCCCCcEEEccCCCCChhhh-----hhc--cCCC
Q 009672 384 RQITDTGLAAL----TSLTGLTHLDLFGARITDSGAAYL------RNFKNLRSLEICGGGLTDAGV-----KHI--KDLS 446 (529)
Q Consensus 384 ~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~~------~~~~~L~~L~l~~~~l~~~~~-----~~~--~~~~ 446 (529)
|.++..+...+ ...+.|+.|.+..|-+...+...+ ...|+|+.|...+|....... ..+ ..+|
T Consensus 224 Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p 303 (388)
T COG5238 224 NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVP 303 (388)
T ss_pred cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccH
Confidence 88876544333 355678888888887766554332 345777777777765432211 111 2345
Q ss_pred CCCeEecCCCCCCCh
Q 009672 447 SLTLLNLSQNCNLTD 461 (529)
Q Consensus 447 ~L~~L~l~~~~~l~~ 461 (529)
-|..|.+.|| .+..
T Consensus 304 ~L~~le~ngN-r~~E 317 (388)
T COG5238 304 LLVDLERNGN-RIKE 317 (388)
T ss_pred HHHHHHHccC-cchh
Confidence 5666666665 4443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=8.8e-09 Score=107.83 Aligned_cols=271 Identities=23% Similarity=0.205 Sum_probs=134.8
Q ss_pred CCccEEEccCCC--CCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEE
Q 009672 230 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 230 ~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
++|+.|-+.++. +.....+.|..++.|+.|++++|.-....|..++.+-+|+.|+++++.+. ..|..+..+.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 567777666664 44444455667777777887776655566677777777777777777766 466667777777777
Q ss_pred ECCCCCCChhhhhhhcCCCCCCeEEcCCCc--cChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCC----cEEEC
Q 009672 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL----KSLNL 381 (529)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l 381 (529)
++..+......+.....+++|++|.+.... .+......+..+.+|+.+.+..... .....+.....| +.+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 777664332233444457777777775543 1112222233444444444432221 011111111111 12222
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhh-----hc-CCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-----RN-FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~-----~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
.++.... ....+..+.+|+.|.+.+|.+........ .. ++++..+.+.++........ ..-.|+|+.|.+..
T Consensus 702 ~~~~~~~-~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 702 EGCSKRT-LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVS 779 (889)
T ss_pred cccccce-eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch-hhccCcccEEEEec
Confidence 2221111 13344566677777777776654322111 11 22333333333322111111 11236777888877
Q ss_pred CCCCChhHHHHHhCCCCCCeeeccCCccChh-HHHhccCCCCCcEEeecCcc
Q 009672 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 506 (529)
|+.+.+..+. ...+..++.+.+..+.+.+. .....+.++++..+.+..-.
T Consensus 780 ~~~~e~~i~~-~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~ 830 (889)
T KOG4658|consen 780 CRLLEDIIPK-LKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK 830 (889)
T ss_pred ccccccCCCH-HHHhhhcccEEecccccccceeeecCCCCceeEecccCccc
Confidence 7555554332 23344455455555544443 23334445555555544443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=4.8e-09 Score=71.61 Aligned_cols=59 Identities=36% Similarity=0.441 Sum_probs=34.0
Q ss_pred CCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCcc
Q 009672 447 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 447 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 506 (529)
+|++|++++| .++...+..|.++++|+.|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555 5555544555555566666666555555555555666666666666654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=5.6e-08 Score=66.32 Aligned_cols=60 Identities=27% Similarity=0.351 Sum_probs=51.0
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCC
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 117 (529)
|+|++|++++|.++......|+.+++|++|++++| .+....+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56888999999888887788888899999999977 6788878888888899999988875
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.2e-07 Score=97.23 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=53.3
Q ss_pred CCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeecc
Q 009672 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 479 (529)
Q Consensus 400 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 479 (529)
++.|++.+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .++..+|..++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 444555555555444444555555555555555555444444555555555555555 4554455555555555555555
Q ss_pred CCccChhHHHhccC-CCCCcEEeecCc
Q 009672 480 NSRITSAGLRHLKP-LKNLRSLTLESC 505 (529)
Q Consensus 480 ~~~~~~~~~~~~~~-~~~L~~L~l~~~ 505 (529)
+|.+.+..+..+.. ..++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 55555444444332 123445555544
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=1.6e-07 Score=91.89 Aligned_cols=197 Identities=35% Similarity=0.456 Sum_probs=111.1
Q ss_pred EEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCC-CCCeEEcCCCccChhhhhhccCCCCCCeEeccCC
Q 009672 282 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360 (529)
Q Consensus 282 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (529)
.+....+.+.. ....+...+.++.+.+.++.+.++.+ .....+ +|+.|++++|.+.... ..++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence 45555555421 12223444677777777776655332 223332 6777777777665432 23456677777777777
Q ss_pred CCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhh
Q 009672 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 440 (529)
Q Consensus 361 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 440 (529)
.+.+.... ....+.|+.|++++|.+..... .......|+++.+++|.+... +..+.++..+..+.+.+|++... +.
T Consensus 174 ~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDLPKL-LSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhhh-hhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cc
Confidence 66654332 2245667777777777766522 223334566777766643222 22345556666666666665542 33
Q ss_pred hccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH
Q 009672 441 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 441 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (529)
.++.++++++|++++| .+++... +..+.+++.|+++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceeccccc-ccccccc--ccccCccCEEeccCccccccch
Confidence 4555566777777776 5555433 5566677777777766655444
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=4.2e-09 Score=102.54 Aligned_cols=127 Identities=25% Similarity=0.285 Sum_probs=67.0
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
|...++++|.+... ...+.-++.|+.|+++.|++++.. .+..|+.|++|||++|.+....-..-.++. |+.|.+.+
T Consensus 166 L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 45555555555443 234444556666666666665543 445566666666666665543222222233 66666666
Q ss_pred CCCCChhHHHHHhCCCCCCeeeccCCccChhHH-HhccCCCCCcEEeecCccCCh
Q 009672 456 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 509 (529)
| .++. ..++.++.+|+.||++.|-+.+-.. .-+..+..|+.|++.||++-.
T Consensus 242 N-~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 N-ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred c-HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 6 4443 2345556666666666664443221 223445556666666665543
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.47 E-value=3.8e-07 Score=93.22 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCC
Q 009672 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335 (529)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (529)
..-++.++++.+..........+.... |+++.+..
T Consensus 58 ~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGn 92 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGN 92 (699)
T ss_pred hhheeEEeeccceecchhHHHHHhhcc-ccccCCcc
Confidence 344677777777655544444444444 77777665
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.9e-07 Score=91.39 Aligned_cols=200 Identities=30% Similarity=0.374 Sum_probs=148.0
Q ss_pred CeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCC-CCCEEECCCCCCChhhhhhhcCCCCCCeEEcCC
Q 009672 257 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 335 (529)
Q Consensus 257 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (529)
..+....+.+... ...+...+.+..+++.++.+.. .+....... +|+.|++.++.+... +..+..++.|+.|+++.
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhh-hhhhhccccccccccCC
Confidence 3577777766332 2344456789999999998874 344444553 899999999987653 24567899999999999
Q ss_pred CccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHH
Q 009672 336 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 415 (529)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 415 (529)
|.+...... ....++|+.+++++|.+.+.... ......|+++.+.+|..... +..+..+.++..+.+.++++... +
T Consensus 173 N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhhhhhhh-hhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-c
Confidence 998766432 23678999999999998875543 23345699999999854332 55677888888888888887764 4
Q ss_pred HhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHH
Q 009672 416 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 466 (529)
Q Consensus 416 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 466 (529)
..+..+++++.|++++|.++.... ++...+++.|+++++ .+....+..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n-~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN-SLSNALPLI 296 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCc-cccccchhh
Confidence 466788899999999999988644 778899999999999 566554443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.1e-07 Score=81.41 Aligned_cols=206 Identities=24% Similarity=0.252 Sum_probs=109.4
Q ss_pred CCCCCEEECCCCCCChh--hhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhh-hhhhcCCCCCc
Q 009672 301 LTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLK 377 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~ 377 (529)
++.++.+++.+|.+++. ....+.++|.|+.|+++.|.+.......-....+|+.+.+.+..+.-.. ...+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 44455555555544321 1122334555555555555443332111122335555555554443211 12233445555
Q ss_pred EEECCCCCCCHHHH--HHHh-cCCCCCEEecCCCCCChHH--HHhhhcCCCCcEEEccCCCCChhhh-hhccCCCCCCeE
Q 009672 378 SLNLDARQITDTGL--AALT-SLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLL 451 (529)
Q Consensus 378 ~L~l~~~~~~~~~~--~~l~-~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L 451 (529)
+|+++.|.+..... .... --+.+++++...|...... .....-+|++..+.+..|++..... .....+|.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 55555553221100 0000 1124555555555322211 1112446888889999888866543 355667888889
Q ss_pred ecCCCCCCChh-HHHHHhCCCCCCeeeccCCccChhHHHh------ccCCCCCcEEeecCccCCh
Q 009672 452 NLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRH------LKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 452 ~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~ 509 (529)
+++.+ ++.+. ..+++.+++.|..|.++++++.+....+ +..+++++.|+=+ ++++
T Consensus 230 nL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 230 NLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred hhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence 99998 66554 5678889999999999999988754422 2556777766543 5543
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=4.7e-07 Score=92.92 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=65.4
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
++.|++.++.+....+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55566666666555555566666666666666666655555566666666666666666665566666666666666666
Q ss_pred CCCCChhHHHHHhC-CCCCCeeeccCCc
Q 009672 456 NCNLTDKTLELISG-LTGLVSLNVSNSR 482 (529)
Q Consensus 456 ~~~l~~~~~~~l~~-l~~L~~L~l~~~~ 482 (529)
| .++..+|..+.. ..++..+++.+|+
T Consensus 500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 N-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-cccccCChHHhhccccCceEEecCCc
Confidence 6 555555555543 2345566666654
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=1.3e-08 Score=96.60 Aligned_cols=192 Identities=18% Similarity=0.094 Sum_probs=136.1
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEe
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 137 (529)
.....||+.|.+. +.+..+..|..|+.+.+..| .+..+ +..+..+..|.+|+|+.|+. ..+|..++.|+ |+.|.
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n-~~r~i-p~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHN-CIRTI-PEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLI 149 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhc-cceec-chhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEE
Confidence 3556777887776 56666777888888888766 34443 67788889999999999884 56777776655 78888
Q ss_pred ccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHH
Q 009672 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMII 217 (529)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (529)
+++| .....+..++..+.|..|+.+.|+..+ .+..++.+.+|+.|++..|.+...... +..
T Consensus 150 ~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~lp~E-l~~--------------- 210 (722)
T KOG0532|consen 150 VSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDLPEE-LCS--------------- 210 (722)
T ss_pred EecC-ccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhCCHH-HhC---------------
Confidence 8886 566677777777889999988855443 556778888888888888776553222 222
Q ss_pred HhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcC---CCccEEEccCC
Q 009672 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI---GSLKVLNLGFN 288 (529)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~ 288 (529)
-.|..||++.|++.. +|..|..++.|++|.|.+|.+.. +|..++.. .--++|++..+
T Consensus 211 ------------LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 211 ------------LPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ------------CceeeeecccCceee-cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 478889999988876 46678889999999999988765 33444322 22345555444
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.37 E-value=3.2e-07 Score=93.75 Aligned_cols=109 Identities=27% Similarity=0.269 Sum_probs=59.8
Q ss_pred cCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhh-hhccCCCCCCeEeccCCcccCchhhhhccCCCCC
Q 009672 30 DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108 (529)
Q Consensus 30 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 108 (529)
+.+++++++.+-..+...|+..+...+|.|++|.+++..+..... .....+|+|+.||++++ .++.. ..++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccH
Confidence 344666666555555566666666666666666666655532222 22356666666666665 34442 455566666
Q ss_pred CEEEcCCCCccchhHHHHHhCCCCCCEEeccCc
Q 009672 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141 (529)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 141 (529)
+.|.+..-...+...-..+.++++|++|+++..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 666665544333233344445666666666653
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.7e-07 Score=81.88 Aligned_cols=185 Identities=17% Similarity=0.173 Sum_probs=97.6
Q ss_pred CCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhhh-cCCCCCcEEECCCCCCCHHHHH-HHhcCCC
Q 009672 324 GLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLA-ALTSLTG 399 (529)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~ 399 (529)
.++.++.+++.+|.++++. ...+..+|.|+.|+++.|.+.... ..+ ....+|+.|.+.+..+...... .+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3566777777777766543 234456777777777777665421 222 2345677777777655443222 3346666
Q ss_pred CCEEecCCCCCChHH--HHhh-hcCCCCcEEEccCCCCChhhhh-hc-cCCCCCCeEecCCCCCCChhHHHHHhCCCCCC
Q 009672 400 LTHLDLFGARITDSG--AAYL-RNFKNLRSLEICGGGLTDAGVK-HI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474 (529)
Q Consensus 400 L~~L~l~~~~l~~~~--~~~~-~~~~~L~~L~l~~~~l~~~~~~-~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 474 (529)
+++++++.|.+.... .... ..-+.+++|+.-+|........ .+ .-+|++..+-+..||-=+...-.....+|.+-
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 666666666322110 0011 1112444454444433221111 11 12466666666666432333334555566677
Q ss_pred eeeccCCccCh-hHHHhccCCCCCcEEeecCccCCh
Q 009672 475 SLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 475 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
.|+++.+++.. ...+++..+++|.-|.++++++.+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 77777776643 333566677777777777776543
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=3.8e-08 Score=96.34 Aligned_cols=218 Identities=28% Similarity=0.379 Sum_probs=88.1
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeE
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (529)
.+.+|..+++..|.+.. ....+..+++|++|++++|.++.. ..+..++.|+.|++++|.+... ..+..+++|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence 34444444444444432 111133445555555555544332 1223334455555555544332 222334455555
Q ss_pred eccCCCCChhhh-hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCC--CCcEEEccCC
Q 009672 356 NLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK--NLRSLEICGG 432 (529)
Q Consensus 356 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~--~L~~L~l~~~ 432 (529)
++++|.+..... . ...+..++.+.+.+|.+... ..+..+..+..+++..|.++...+ +.... +|+.+++++|
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGN 242 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccC
Confidence 555554444322 1 23444555555555544432 111111222222333433332211 00111 2555555555
Q ss_pred CCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH--Hh--ccCCCCCcEEeecCccC
Q 009672 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL--RH--LKPLKNLRSLTLESCKV 507 (529)
Q Consensus 433 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~--~~~~~~L~~L~l~~~~~ 507 (529)
++.... ..+..++.+..+++.++ .+.. ...+...+.+..+....+++..... .. ....+.++.+.+.++.+
T Consensus 243 ~i~~~~-~~~~~~~~l~~l~~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 243 RISRSP-EGLENLKNLPVLDLSSN-RISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cccccc-ccccccccccccchhhc-cccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 554431 22334455555555555 3332 1122333444455555554432111 11 23345555555555533
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=5.4e-08 Score=95.33 Aligned_cols=217 Identities=34% Similarity=0.369 Sum_probs=130.1
Q ss_pred CCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEe
Q 009672 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 356 (529)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (529)
+..++.+.+..+.+.. ....+..+.+|+.+++.++.+..+.. .+..+++|+.|++++|.++.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3455555566655542 22235667788888888877654322 155677888888888877654 2344556677788
Q ss_pred ccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHH-HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC
Q 009672 357 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435 (529)
Q Consensus 357 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 435 (529)
+++|.+.+. ..+..+..|+.+++++|.+..... . ...+.+++.+.+.+|.+...... ..+..+..+++..|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~--~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL--DLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch--HHHHHHHHhhcccccce
Confidence 888777653 234446777777777777776433 2 45667777777777766543221 12223333455555554
Q ss_pred hhhhhhccCCCC--CCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCC
Q 009672 436 DAGVKHIKDLSS--LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 436 ~~~~~~~~~~~~--L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (529)
.... +...+. |+.+++.+| .+... +..+..++.+..|++.++.+... ..+...+.+..+....+.+.
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n-~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGN-RISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eccC--cccchhHHHHHHhcccC-ccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 4311 222233 778888887 44442 14455677888888888776653 33455666777777777654
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=3.1e-08 Score=96.70 Aligned_cols=126 Identities=29% Similarity=0.339 Sum_probs=71.9
Q ss_pred CCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 352 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
|...+++.|.+.. ...++.-++.++.|+++.|++++. ..+..|+.|+.|+++.|.+...+--....|. |+.|.+++
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 4444455554332 223334445677777777777663 3566677777777777766654322223344 77777777
Q ss_pred CCCChhhhhhccCCCCCCeEecCCCCCCChh-HHHHHhCCCCCCeeeccCCccC
Q 009672 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 432 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
|.++.. ..+.++.+|+.||++.| -+.+. -...+..+..|+.|+|.||++-
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 766543 33556667777777777 22222 1223445567777777777764
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.20 E-value=3.8e-08 Score=93.46 Aligned_cols=196 Identities=20% Similarity=0.236 Sum_probs=144.2
Q ss_pred CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEE
Q 009672 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 380 (529)
+.--...+++.|.+.. .+..++.+..|+.+.+..|.+... +..++.+..|+.++++.|.+.... ..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHLP-DGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcCC-hhhhcCc-ceeEE
Confidence 3444456667776654 445556667788888887766543 445677888999999998877643 3444444 89999
Q ss_pred CCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC
Q 009672 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 381 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (529)
+++|+++.. +..++..+.|..|+.+.|++...+ ..+.++.+|+.|.++.|.+.... ..+..+ .|..||++.| ++.
T Consensus 150 ~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp-~El~~L-pLi~lDfScN-kis 224 (722)
T KOG0532|consen 150 VSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLP-EELCSL-PLIRLDFSCN-KIS 224 (722)
T ss_pred EecCccccC-CcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCC-HHHhCC-ceeeeecccC-cee
Confidence 999998876 556667788999999999888874 46678889999999999887763 334444 4889999998 777
Q ss_pred hhHHHHHhCCCCCCeeeccCCccChhHHHhc--cCCCCCcEEeecCcc
Q 009672 461 DKTLELISGLTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLESCK 506 (529)
Q Consensus 461 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 506 (529)
. +|..|..++.|++|-|.+|++........ +...-.++|++.-|+
T Consensus 225 ~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 Y-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred e-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 6 67788899999999999999987655332 445667888888884
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.04 E-value=1.1e-05 Score=81.65 Aligned_cols=108 Identities=30% Similarity=0.315 Sum_probs=49.5
Q ss_pred CCCCCeEecCCCcCChh--hhHhhhcCCCccEEEccCC-CC-ChH---HHHhhcCCCCCCEEECCCCC-CChhhhhhhcC
Q 009672 253 LGSLFYLNLNRCQLSDD--GCEKFSKIGSLKVLNLGFN-EI-TDE---CLVHLKGLTNLESLNLDSCG-IGDEGLVNLTG 324 (529)
Q Consensus 253 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~-~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~ 324 (529)
++.|+.+.+..+..... .......++.|+.|+++++ .. ... .......+++|+.+++.++. +++.....++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566665555532221 1122234555666665541 11 000 11122334566666666554 44444444332
Q ss_pred -CCCCCeEEcCCCc-cChhhhhhc-cCCCCCCeEeccCC
Q 009672 325 -LCNLKCLELSDTQ-VGSSGLRHL-SGLTNLESINLSFT 360 (529)
Q Consensus 325 -~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~ 360 (529)
+++|+.|.+..|. +++.+...+ ..+++|+.|++++|
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 5566666655554 444443322 34555666666655
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.00 E-value=1.7e-05 Score=80.24 Aligned_cols=227 Identities=34% Similarity=0.441 Sum_probs=115.6
Q ss_pred cCCCccEEEccCC-CCChH-HHHhhcCCCCCCEEECCCC-CC-Chh---hhhhhcCCCCCCeEEcCCCc-cChhhhhhcc
Q 009672 276 KIGSLKVLNLGFN-EITDE-CLVHLKGLTNLESLNLDSC-GI-GDE---GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 347 (529)
Q Consensus 276 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~-~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 347 (529)
.++.|+.+.+..+ .+... .......++.|+.|+++++ .. ... .......+++|+.++++++. +++.....++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4577777777665 33322 2334556788888887762 11 111 11223345777777777776 5655555554
Q ss_pred C-CCCCCeEeccCCC-CChhhhhhhc-CCCCCcEEECCCCCCC-HHHHHH-HhcCCCCCEEecCCCC----CChHH----
Q 009672 348 G-LTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQIT-DTGLAA-LTSLTGLTHLDLFGAR----ITDSG---- 414 (529)
Q Consensus 348 ~-~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~-~~~~~~-l~~~~~L~~L~l~~~~----l~~~~---- 414 (529)
. |++|+.|.+.+|. +++.....+. .++.|++|+++++... +..... ..+|++++.+.+.... ++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 3 6777777766665 5655554444 5677777777766443 221222 2356666665443332 21111
Q ss_pred ---------HHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHH-HhCCCCCCeeeccCCc-c
Q 009672 415 ---------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSR-I 483 (529)
Q Consensus 415 ---------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~-~ 483 (529)
......++.++.+.+.++...+.+. .+.+.+|+.++ ..... ...+..++.|+++.|. .
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL----------ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcch----------HHHhcCCcccc-hHHHHHhccCCccceEecccCccc
Confidence 1112334444444444333222211 23444444443 22222 2223337888888875 3
Q ss_pred ChhHHHhccC-CCCCcEEeecCcc-CChhHHH
Q 009672 484 TSAGLRHLKP-LKNLRSLTLESCK-VTANDIK 513 (529)
Q Consensus 484 ~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~ 513 (529)
+......... +..++.+++.++. ++.....
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccccchhhh
Confidence 4433333332 6777888888874 3433333
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=4.5e-06 Score=64.49 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=52.3
Q ss_pred CcEEECCCCCCCHH--HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEec
Q 009672 376 LKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453 (529)
Q Consensus 376 L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 453 (529)
+-.++++.|.+... .+..+.....|+..++++|.+.++++..-.+++.++.|++++|.+.+. |..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhccc
Confidence 33445555544321 123333344455555666555555444445555555566655555554 233555555555655
Q ss_pred CCCCCCChhHHHHHhCCCCCCeeeccCCccChh
Q 009672 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 454 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
+.|+ +.. .|..+..+.++-.|+..+|.....
T Consensus 108 ~~N~-l~~-~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 108 RFNP-LNA-EPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccCc-ccc-chHHHHHHHhHHHhcCCCCccccC
Confidence 5552 222 233333355555555555544433
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.77 E-value=1.4e-05 Score=64.43 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=5.0
Q ss_pred hhhcCCCCcEEEc
Q 009672 417 YLRNFKNLRSLEI 429 (529)
Q Consensus 417 ~~~~~~~L~~L~l 429 (529)
.+..+++|+.+.+
T Consensus 76 ~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 76 AFSNCTNLKNIDI 88 (129)
T ss_dssp TTTT-TTECEEEE
T ss_pred ccccccccccccc
Confidence 3333444444444
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.77 E-value=1.2e-05 Score=64.79 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=56.3
Q ss_pred hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCC
Q 009672 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447 (529)
Q Consensus 368 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 447 (529)
..|.++.+|+.+.+.. .+.......|..+++|+.+.+.++ +...+...+.++++++.+.+.. .+...+...+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455566666666653 344444445566666777776653 5555555666776777777754 444444455666777
Q ss_pred CCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCc
Q 009672 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 498 (529)
Q Consensus 448 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 498 (529)
|+.+++..+ +.......+.++ .|+.+.+.+ .+.......|..|++|+
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 777777653 555555556665 777777665 44444455666666553
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=4e-05 Score=63.61 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=90.1
Q ss_pred CcEEECCCCCCCHHHHHHHh-cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecC
Q 009672 376 LKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 454 (529)
=+++++.+.++.... .++ ...+...+++++|++.... -+..++.|.+|.+.+|.++.+.+..-.-+|+|+.|.+.
T Consensus 21 e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchh--hccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345556555554421 122 2345678888888877653 35578899999999999998877655556889999999
Q ss_pred CCCCCChhH-HHHHhCCCCCCeeeccCCccChhHH---HhccCCCCCcEEeecCcc
Q 009672 455 QNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 455 ~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~ 506 (529)
+| .+.... ...+..||+|+.|.+-+|++..... ..+-.+|+|+.||.++=.
T Consensus 97 nN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred Cc-chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99 555543 3467789999999999999876443 345678999999988753
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=4.4e-05 Score=63.39 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=82.9
Q ss_pred CCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh-hhccCCCCCCeEe
Q 009672 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLN 452 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~ 452 (529)
.+...+++++|.+.. ...|..++.|..|.+.+|+|+...+..-..+++|+.|.+.+|.+...+. ..+..||.|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 467789999998877 4567888999999999999998877666678899999999998876543 2466789999999
Q ss_pred cCCCCCCChhHH---HHHhCCCCCCeeeccCCc
Q 009672 453 LSQNCNLTDKTL---ELISGLTGLVSLNVSNSR 482 (529)
Q Consensus 453 l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~ 482 (529)
+-+|+ ++...- ..+..+|+|+.||+++-.
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 99994 444321 135568999999998754
No 62
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=3.3e-05 Score=64.16 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=49.0
Q ss_pred CCEEecCCCCCChHHHHhhhcCCCCcEEEccCC-CCChhhhhhccC-CCCCCeEecCCCCCCChhHHHHHhCCCCCCeee
Q 009672 400 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477 (529)
Q Consensus 400 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 477 (529)
++.++-+++.|..++..-+..+++++.|.+.+| .+.+.....+++ .++|+.|+|++|+.|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455566666666666666666666666666655 344444443333 356666666666666666666666666666666
Q ss_pred ccCC
Q 009672 478 VSNS 481 (529)
Q Consensus 478 l~~~ 481 (529)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6554
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=7.3e-05 Score=46.43 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=18.6
Q ss_pred CCCeeeccCCccChhHHHhccCCCCCcEEeecCccCC
Q 009672 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (529)
+|++|++++|++.+..+ .+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 45555555555554322 3555566666666666555
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=1.4e-05 Score=69.49 Aligned_cols=79 Identities=29% Similarity=0.342 Sum_probs=33.9
Q ss_pred CCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH-HHhhhcCCCCcEEEc
Q 009672 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEI 429 (529)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l 429 (529)
+.+.|+..+|+++++.. ...++.|++|.++-|+++. ...+..|.+|++|++..|.|.+.. ...+.++|+|+.|-|
T Consensus 20 ~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH--HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34444444444444221 2234444455554444444 233444444444444444444322 223344444444444
Q ss_pred cCCC
Q 009672 430 CGGG 433 (529)
Q Consensus 430 ~~~~ 433 (529)
..|+
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 4443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=1.4e-05 Score=69.51 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhh-hhhccCCCCCCeEe
Q 009672 374 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN 452 (529)
Q Consensus 374 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~ 452 (529)
.+.+.|++.++.+++ ......++.|+.|.++-|+|+... .+..|.+|++|+|+.|.+.+.. ..++.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 356667777777776 344557777777777777776643 3556777777777777666543 23556677777777
Q ss_pred cCCCCCCChhHH----HHHhCCCCCCee
Q 009672 453 LSQNCNLTDKTL----ELISGLTGLVSL 476 (529)
Q Consensus 453 l~~~~~l~~~~~----~~l~~l~~L~~L 476 (529)
|..||=.....+ ..+.-+|+|++|
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhc
Confidence 777653322222 234456666666
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.50 E-value=0.00017 Score=44.79 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC
Q 009672 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435 (529)
Q Consensus 399 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 435 (529)
+|++|++++|++++.++ .+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 44555555555554332 2445555555555555544
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=5.7e-05 Score=62.81 Aligned_cols=84 Identities=32% Similarity=0.430 Sum_probs=71.8
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccC-CCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
.++.++-+++.+..+...-+.+++.++.|.+.+|..+.+...+.+++ .++|+.|++++|..+|+.....+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 38888888888888888888999999999999998888888888765 46899999999988888888888888888888
Q ss_pred eccCc
Q 009672 137 DLERC 141 (529)
Q Consensus 137 ~l~~~ 141 (529)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 88764
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=2e-05 Score=60.99 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeE
Q 009672 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 451 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 451 (529)
....|+.+++++|.+.+.+...-...+.++.+++.+|++.+.+.+ +..++.|+.|+++.|++... +..+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccc-hHHHHHHHhHHHh
Confidence 334455555555555544333333444555555555555555433 55555555555555555443 2223334455555
Q ss_pred ecCCC
Q 009672 452 NLSQN 456 (529)
Q Consensus 452 ~l~~~ 456 (529)
+..+|
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 55554
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.23 E-value=6.7e-05 Score=73.69 Aligned_cols=312 Identities=26% Similarity=0.350 Sum_probs=164.9
Q ss_pred CCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhh----cC-CC
Q 009672 181 NLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS----AL-GS 255 (529)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~ 255 (529)
.+..+.+.+|.+.+.+...+... +...+.|..|+++++.+.+.....+. .. ..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~----------------------l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~ 145 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQA----------------------LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCL 145 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHH----------------------hcccccHhHhhcccCCCccHhHHHHHhhcccchHH
Confidence 36777788888777666555433 45557888888888877654333332 22 45
Q ss_pred CCeEecCCCcCChhhhH----hhhcCCCccEEEccCCCCChH----HHHhhc----CCCCCCEEECCCCCCChhhhh---
Q 009672 256 LFYLNLNRCQLSDDGCE----KFSKIGSLKVLNLGFNEITDE----CLVHLK----GLTNLESLNLDSCGIGDEGLV--- 320 (529)
Q Consensus 256 L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~~~--- 320 (529)
+++|++..|.++..... .+.....++.++++.|.+... .+..+. ...++++|.+.+|.++.....
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 66677777776654332 333456677777777765321 122222 356677777777765533222
Q ss_pred -hhcCCCC-CCeEEcCCCccChhhhh----hccCC-CCCCeEeccCCCCChhhhh----hhcCCCCCcEEECCCCCCCHH
Q 009672 321 -NLTGLCN-LKCLELSDTQVGSSGLR----HLSGL-TNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 321 -~~~~~~~-L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~ 389 (529)
.+...+. +..+++..|.+.+.+.. .+... +.++.++++.|.+++.... .+..++.++.+.+..|.+.+.
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 2233333 55566666666554322 22333 4566777777766554432 233556677777777766654
Q ss_pred HHHHH----hcCCCCCEEecCCCCCChHH-----HHhhhcCCCCcEEEccCCCCChhhhhhc----cC-CCCCCeEecCC
Q 009672 390 GLAAL----TSLTGLTHLDLFGARITDSG-----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KD-LSSLTLLNLSQ 455 (529)
Q Consensus 390 ~~~~l----~~~~~L~~L~l~~~~l~~~~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~-~~~L~~L~l~~ 455 (529)
..... .....+..+.+.++...... ......-..+......++...+.....+ .+ -+.+..+++..
T Consensus 306 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (478)
T KOG4308|consen 306 GVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNS 385 (478)
T ss_pred HHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhc
Confidence 32221 12223333334333222111 1111112222333333333333333222 11 13355566666
Q ss_pred CCCCChh----HHHHHhCCCCCCeeeccCCccChhHHHhc-----cCCCCCcEEeecCccCChhHHHHhh
Q 009672 456 NCNLTDK----TLELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 456 ~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+ .+... ....+...+.+..++++.|.........+ .+. .++.++++.|.++..+.+...
T Consensus 386 ~-~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~ 453 (478)
T KOG4308|consen 386 Q-VIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQ 453 (478)
T ss_pred c-ccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHH
Confidence 5 22222 23355567888888888887655444222 344 888899999888776655444
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.88 E-value=0.0028 Score=60.17 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=15.9
Q ss_pred CCCCCCeEeccCCcccCchhhhhccCCC-CCCEEEcCCCC
Q 009672 79 DCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNN 117 (529)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 117 (529)
.+..++.|++++| .+... + .+| +|++|.+++|.
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-P----~LP~sLtsL~Lsnc~ 83 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-P----VLPNELTEITIENCN 83 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-C----CCCCCCcEEEccCCC
Confidence 3455666666655 33332 1 222 45555555544
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00046 Score=60.05 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=57.8
Q ss_pred CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC--CCChHHHHhhhcCCCCcEEEccCCCCChh-hhhhccCCCCCCeE
Q 009672 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLL 451 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L 451 (529)
.|+.+.+.+..++. ...+..+++|+.|.++.| .+.........++|+|+++.+++|++... ....+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34444444444433 234456667777777777 44444343445668888888888877642 12234455677778
Q ss_pred ecCCCCCCChh---HHHHHhCCCCCCeeeccC
Q 009672 452 NLSQNCNLTDK---TLELISGLTGLVSLNVSN 480 (529)
Q Consensus 452 ~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~ 480 (529)
++.+|+ .+.. --..|.-+++|+.|+-.+
T Consensus 122 dl~n~~-~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 122 DLFNCS-VTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcccCC-ccccccHHHHHHHHhhhhccccccc
Confidence 887773 3321 223444567777765443
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.00058 Score=59.45 Aligned_cols=82 Identities=26% Similarity=0.301 Sum_probs=38.3
Q ss_pred cCCCCcEEEccCCC--CChhhhhhccCCCCCCeEecCCCCCCChh-HHHHHhCCCCCCeeeccCCccChhHH---HhccC
Q 009672 420 NFKNLRSLEICGGG--LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKP 493 (529)
Q Consensus 420 ~~~~L~~L~l~~~~--l~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~ 493 (529)
.+++|+.|.++.|. +..........+|+|+++++++| .+... ....+..+++|..|++.+|..++..- ..|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 35566666666652 22222222334466666666666 44421 11233445556666666665443211 23444
Q ss_pred CCCCcEEee
Q 009672 494 LKNLRSLTL 502 (529)
Q Consensus 494 ~~~L~~L~l 502 (529)
+++|+.|+-
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 555555543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.41 E-value=0.00041 Score=68.26 Aligned_cols=201 Identities=29% Similarity=0.408 Sum_probs=121.6
Q ss_pred CCEEECCCCCCChhhh----hhhcCCCCCCeEEcCCCccChhhhhhcc----CC-CCCCeEeccCCCCChhhh----hhh
Q 009672 304 LESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLS----GL-TNLESINLSFTGISDGSL----RKL 370 (529)
Q Consensus 304 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~----~~l 370 (529)
+..+.+.+|.+..... ..+...+.|+.|++++|.+++.....+. .. +.+++|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6777777776654333 3455678899999999988866554442 22 457777887777765443 233
Q ss_pred cCCCCCcEEECCCCCCCHHHH----HHHh----cCCCCCEEecCCCCCChHHH----HhhhcCCC-CcEEEccCCCCChh
Q 009672 371 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGA----AYLRNFKN-LRSLEICGGGLTDA 437 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~----~~l~----~~~~L~~L~l~~~~l~~~~~----~~~~~~~~-L~~L~l~~~~l~~~ 437 (529)
.....++.+++..|.+...+. ..+. ...++++|.+.+|.++.... ..+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456778888888877753222 1222 24567778888877765432 23344455 66677777777766
Q ss_pred hhhhc----cCC-CCCCeEecCCCCCCChhHH----HHHhCCCCCCeeeccCCccChhHHHh----ccCCCCCcEEeecC
Q 009672 438 GVKHI----KDL-SSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLES 504 (529)
Q Consensus 438 ~~~~~----~~~-~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~ 504 (529)
+...+ ... +.+++++++.| .+++... +.+..++.++.+.++.|++.+..... ......+..+.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 44432 223 56677777777 5554433 33445667777777777776655532 23334455555554
Q ss_pred c
Q 009672 505 C 505 (529)
Q Consensus 505 ~ 505 (529)
+
T Consensus 328 ~ 328 (478)
T KOG4308|consen 328 T 328 (478)
T ss_pred c
Confidence 4
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.37 E-value=0.0073 Score=57.48 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=48.8
Q ss_pred hcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCC-CCChhhhhhccCCCCC
Q 009672 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSL 448 (529)
Q Consensus 370 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L 448 (529)
+..+.+++.|++++|.+...+ .-.++|+.|.+.+|.--...+..+ .++|+.|++++| .+... + ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-P------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-P------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-c------ccc
Confidence 445789999999999887753 233579999999874322223333 358999999987 44321 1 356
Q ss_pred CeEecCCC
Q 009672 449 TLLNLSQN 456 (529)
Q Consensus 449 ~~L~l~~~ 456 (529)
+.|++.++
T Consensus 115 e~L~L~~n 122 (426)
T PRK15386 115 RSLEIKGS 122 (426)
T ss_pred ceEEeCCC
Confidence 66666554
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.77 E-value=0.044 Score=28.70 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=12.7
Q ss_pred CCCCcEEeecCccCChhHHHHh
Q 009672 494 LKNLRSLTLESCKVTANDIKRL 515 (529)
Q Consensus 494 ~~~L~~L~l~~~~~~~~~~~~l 515 (529)
+++|++|++++|+++..+++.+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566777777777776666654
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.35 E-value=0.21 Score=26.73 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=13.0
Q ss_pred CCCCeEecCCCCCCChhHHHHH
Q 009672 446 SSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~l 467 (529)
++|++|+|++|+++++.....+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 5566666666666666554443
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.90 E-value=0.13 Score=27.58 Aligned_cols=19 Identities=47% Similarity=0.840 Sum_probs=8.7
Q ss_pred CCCCeEeccCCcccCchhh
Q 009672 81 SNLQSLDFNFCIQISDGGL 99 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~ 99 (529)
++|+.|+|++|..+++.+.
T Consensus 2 ~~L~~L~l~~C~~itD~gl 20 (26)
T smart00367 2 PNLRELDLSGCTNITDEGL 20 (26)
T ss_pred CCCCEeCCCCCCCcCHHHH
Confidence 3444444444444444433
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.84 E-value=0.088 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=11.7
Q ss_pred CCCCeeeccCCccChhHHHhc
Q 009672 471 TGLVSLNVSNSRITSAGLRHL 491 (529)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~~~~ 491 (529)
++|+.|+|++|++++.+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566777777777666555443
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.38 E-value=0.15 Score=24.12 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=7.0
Q ss_pred CCCcEEeecCccCC
Q 009672 495 KNLRSLTLESCKVT 508 (529)
Q Consensus 495 ~~L~~L~l~~~~~~ 508 (529)
++|++|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666677666654
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.78 E-value=0.23 Score=25.29 Aligned_cols=12 Identities=50% Similarity=0.722 Sum_probs=6.6
Q ss_pred eeEEEecCcccC
Q 009672 59 LLSVDLSGSDVT 70 (529)
Q Consensus 59 l~~l~l~~~~~~ 70 (529)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.28 E-value=0.48 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.0
Q ss_pred CCCcEEeecCccCChhHHHHhh
Q 009672 495 KNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 495 ~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
++|++|+|++|.++..+...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5678888888888887777665
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.37 E-value=0.87 Score=24.20 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=8.4
Q ss_pred CCCCeeeccCCccChhHH
Q 009672 471 TGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~ 488 (529)
++|+.|++++|.+.....
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555554444433
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.37 E-value=0.87 Score=24.20 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=8.4
Q ss_pred CCCCeeeccCCccChhHH
Q 009672 471 TGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 471 ~~L~~L~l~~~~~~~~~~ 488 (529)
++|+.|++++|.+.....
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555554444433
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.96 E-value=1.3 Score=43.61 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=18.7
Q ss_pred hcCCCCcEEEccCCCCChhhh-hhc-cCCCCCCeEecCCC
Q 009672 419 RNFKNLRSLEICGGGLTDAGV-KHI-KDLSSLTLLNLSQN 456 (529)
Q Consensus 419 ~~~~~L~~L~l~~~~l~~~~~-~~~-~~~~~L~~L~l~~~ 456 (529)
.+.+.+..+.+++|.+..... .++ ...|+|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345566666666665543211 111 22355555555555
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.18 E-value=5.2 Score=21.37 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=10.3
Q ss_pred CCCcEEeecCccCCh
Q 009672 495 KNLRSLTLESCKVTA 509 (529)
Q Consensus 495 ~~L~~L~l~~~~~~~ 509 (529)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 467777777777653
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=52.86 E-value=0.47 Score=41.11 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=47.0
Q ss_pred hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCC
Q 009672 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447 (529)
Q Consensus 368 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 447 (529)
..+..+...+.|+++.+.+... ...++.+..+.+++++.|++... +..+.....++.++.-.|..+. .|.++...|.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhh-CCccccccCC
Confidence 3344555666677666655443 12334444566666666655443 2233334445555554444433 3556666677
Q ss_pred CCeEecCCCC
Q 009672 448 LTLLNLSQNC 457 (529)
Q Consensus 448 L~~L~l~~~~ 457 (529)
+++++..+++
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 7777777763
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.43 E-value=17 Score=36.26 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=18.6
Q ss_pred CCCCCcEEECCCCCCCHHH-HHHH-hcCCCCCEEecCCC
Q 009672 372 GLSSLKSLNLDARQITDTG-LAAL-TSLTGLTHLDLFGA 408 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~-~~~l-~~~~~L~~L~l~~~ 408 (529)
+.+.+..+.+++|++.... ...+ ...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4455666666666554421 1112 14455666666665
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=43.70 E-value=1.5e+02 Score=29.41 Aligned_cols=278 Identities=18% Similarity=0.104 Sum_probs=128.1
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhh---cCCCccEEEccCCCCChHHHHhhc---CCCC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHLK---GLTN 303 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~ 303 (529)
+.+++++++.+.+.+..+..+..-. --+.+..|..+......+. .-..+.+++++.+...+..+.... .-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 6678888888877665544443211 1155555655443322221 112466777777766554444322 2234
Q ss_pred CCEEECCCCCCCh-hh--hhhhcCCCCCCeEEcCCCccCh--------hhhhhccCCCCCCeEeccCCCCChhhhhhh--
Q 009672 304 LESLNLDSCGIGD-EG--LVNLTGLCNLKCLELSDTQVGS--------SGLRHLSGLTNLESINLSFTGISDGSLRKL-- 370 (529)
Q Consensus 304 L~~L~l~~~~~~~-~~--~~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-- 370 (529)
+++++.+...+.- .. ....+.-++++..+++.+.... .....++.-+++ .|++..+...+.-+..+
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 5555555543321 11 1122333566666666554321 111222223444 45555554433222111
Q ss_pred --cCCCCC--cEEECCCCCCCHHH-HHHHhcCCCCCEEecCCCCCChHHHH--hhhcCCCCcEEEccCCCCChh---hh-
Q 009672 371 --AGLSSL--KSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAA--YLRNFKNLRSLEICGGGLTDA---GV- 439 (529)
Q Consensus 371 --~~~~~L--~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~--~~~~~~~L~~L~l~~~~l~~~---~~- 439 (529)
+.-... -.+++..|...... ......-..++++.++.|...+.+.. .+..-++.+.+++....-... ..
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~ 401 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTE 401 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccccc
Confidence 100111 12333333333210 11111223467777777765554322 334556677777654322100 00
Q ss_pred ---hhc--cCCCCCCeEecCCCCCCChhHHH---HHhCCCCCCeeeccCCccChhHH----HhccCCCCCcEEeecCccC
Q 009672 440 ---KHI--KDLSSLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKV 507 (529)
Q Consensus 440 ---~~~--~~~~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~ 507 (529)
... ....-+..+.++.| ......-. .+..-+.+..|++++|.-...+. .+.+.-.+++.+.++.|..
T Consensus 402 a~~v~k~~~~~g~l~el~ls~~-~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 402 APPVSKKSRTHGVLAELSLSPG-PLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred chhhhhhhcccccccCcccCCC-cccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 000 11234667777777 33333222 23345778888888886554332 3334445677777777766
Q ss_pred ChhH
Q 009672 508 TAND 511 (529)
Q Consensus 508 ~~~~ 511 (529)
+...
T Consensus 481 ~~~g 484 (553)
T KOG4242|consen 481 EDPG 484 (553)
T ss_pred cccc
Confidence 5543
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=41.67 E-value=0.52 Score=40.82 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=56.6
Q ss_pred hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCC
Q 009672 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474 (529)
Q Consensus 395 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 474 (529)
......+.|+++.|++...+. -++.+..|..|+++.|++.-. +..+.+...+..+++..| +.. ..|..+...++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n-~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKN-NHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhcc-chh-hCCccccccCCcc
Confidence 344556677777776555432 234456677778877765432 455555566666777766 333 3566777788888
Q ss_pred eeeccCCccChhHH
Q 009672 475 SLNVSNSRITSAGL 488 (529)
Q Consensus 475 ~L~l~~~~~~~~~~ 488 (529)
.++..++++.....
T Consensus 115 ~~e~k~~~~~~~~~ 128 (326)
T KOG0473|consen 115 KNEQKKTEFFRKLF 128 (326)
T ss_pred hhhhccCcchHHHH
Confidence 88888888765443
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=41.17 E-value=56 Score=32.10 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=7.5
Q ss_pred CCcEEeecCccCChh
Q 009672 496 NLRSLTLESCKVTAN 510 (529)
Q Consensus 496 ~L~~L~l~~~~~~~~ 510 (529)
.+++|+++.|.....
T Consensus 355 R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGE 369 (553)
T ss_pred eeeEeeccccccccc
Confidence 355555555544443
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=39.32 E-value=18 Score=19.36 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=11.3
Q ss_pred CCCcEEeecCccCChh
Q 009672 495 KNLRSLTLESCKVTAN 510 (529)
Q Consensus 495 ~~L~~L~l~~~~~~~~ 510 (529)
++|+.|++++|++++.
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 3577888888877653
No 92
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=35.22 E-value=36 Score=18.11 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=11.6
Q ss_pred CCcEEeecCccCChh-HHHHhh
Q 009672 496 NLRSLTLESCKVTAN-DIKRLQ 516 (529)
Q Consensus 496 ~L~~L~l~~~~~~~~-~~~~l~ 516 (529)
+|++|.+.+..+... .++++-
T Consensus 1 sLKtL~L~~v~f~~~~~l~~Ll 22 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLL 22 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhh
Confidence 356666666665433 455554
Done!