Query 009672
Match_columns 529
No_of_seqs 241 out of 3079
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 10:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.6E-46 1.2E-50 393.6 15.8 465 32-509 152-718 (768)
2 3t6q_A CD180 antigen; protein- 100.0 4.9E-45 1.7E-49 376.9 23.3 448 56-509 32-537 (606)
3 3rgz_A Protein brassinosteroid 100.0 3.9E-45 1.3E-49 385.7 17.0 496 18-528 110-711 (768)
4 3t6q_A CD180 antigen; protein- 100.0 7.2E-44 2.5E-48 368.1 21.1 470 32-509 34-561 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 7.2E-43 2.5E-47 365.5 21.6 468 55-527 47-615 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-42 4.8E-47 363.3 21.8 466 56-528 24-591 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-42 9.2E-47 356.4 18.7 437 56-508 31-534 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 6.9E-42 2.4E-46 353.4 13.0 442 55-509 54-559 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 7.7E-42 2.6E-46 350.7 13.2 438 56-509 27-532 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-39 5E-44 332.0 24.5 415 57-510 26-512 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-41 4.4E-46 362.5 8.0 448 55-510 22-541 (844)
12 4eco_A Uncharacterized protein 100.0 1.3E-39 4.4E-44 335.8 12.0 428 49-510 73-602 (636)
13 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-39 1.5E-43 325.9 15.0 437 57-510 21-483 (520)
14 2z63_A TOLL-like receptor 4, v 100.0 2.2E-39 7.4E-44 332.5 10.6 426 60-528 10-525 (570)
15 3j0a_A TOLL-like receptor 5; m 100.0 3E-39 1E-43 344.2 11.4 426 60-527 7-532 (844)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-37 5.1E-42 317.1 19.9 426 58-528 6-504 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 9.9E-38 3.4E-42 316.0 15.3 421 60-528 3-475 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 7.5E-39 2.6E-43 335.0 7.0 422 56-510 322-842 (876)
19 4eco_A Uncharacterized protein 100.0 4.6E-37 1.6E-41 316.7 13.8 408 81-528 81-594 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 1.6E-36 5.6E-41 317.4 15.2 406 81-528 323-834 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-36 6.8E-41 308.9 13.3 440 56-509 51-511 (562)
22 3v47_A TOLL-like receptor 5B a 100.0 4.5E-35 1.5E-39 291.6 17.7 363 106-509 30-409 (455)
23 3v47_A TOLL-like receptor 5B a 100.0 5.4E-35 1.9E-39 291.0 18.0 373 56-485 29-409 (455)
24 1z7x_W Ribonuclease inhibitor; 100.0 8.8E-34 3E-38 282.9 25.3 400 81-526 3-460 (461)
25 1z7x_W Ribonuclease inhibitor; 100.0 1E-32 3.4E-37 275.2 31.8 358 56-438 2-414 (461)
26 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-34 6.1E-39 300.2 19.2 448 56-509 51-581 (635)
27 2p1m_B Transport inhibitor res 100.0 9.2E-33 3.2E-37 284.7 29.2 470 1-524 8-534 (594)
28 3ogk_B Coronatine-insensitive 100.0 2.1E-33 7.2E-38 289.3 23.9 472 2-525 16-542 (592)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-34 5.2E-39 295.0 13.3 428 55-528 29-504 (562)
30 1o6v_A Internalin A; bacterial 100.0 5.5E-32 1.9E-36 269.4 28.2 344 57-485 46-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 3.2E-31 1.1E-35 263.8 29.9 342 33-436 48-389 (466)
32 4fmz_A Internalin; leucine ric 100.0 6.1E-31 2.1E-35 251.9 26.9 307 152-509 41-347 (347)
33 2id5_A Lingo-1, leucine rich r 100.0 2.5E-32 8.7E-37 273.2 11.7 302 155-484 32-333 (477)
34 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-31 4.2E-36 278.8 16.0 429 61-528 35-574 (635)
35 4fmz_A Internalin; leucine ric 100.0 1E-29 3.6E-34 243.4 26.3 307 102-484 40-346 (347)
36 2id5_A Lingo-1, leucine rich r 100.0 8.4E-31 2.9E-35 262.1 19.0 304 56-388 31-334 (477)
37 3ogk_B Coronatine-insensitive 100.0 1.7E-30 5.9E-35 267.5 21.8 417 84-528 53-520 (592)
38 3o6n_A APL1; leucine-rich repe 100.0 8.7E-31 3E-35 254.8 16.7 268 230-516 93-360 (390)
39 2p1m_B Transport inhibitor res 100.0 7.6E-29 2.6E-33 255.5 30.8 425 51-506 60-542 (594)
40 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-29 5.7E-34 249.2 17.6 344 56-489 41-392 (457)
41 3oja_B Anopheles plasmodium-re 100.0 1.2E-29 3.9E-34 260.2 17.0 268 230-516 99-366 (597)
42 3o6n_A APL1; leucine-rich repe 100.0 8.7E-29 3E-33 240.7 20.2 313 56-439 44-356 (390)
43 3bz5_A Internalin-J, INLJ; leu 100.0 4.2E-29 1.4E-33 246.3 18.0 322 55-464 62-391 (457)
44 1jl5_A Outer protein YOPM; leu 100.0 2.9E-29 1E-33 247.2 14.8 370 57-509 11-410 (454)
45 3oja_B Anopheles plasmodium-re 100.0 5.8E-28 2E-32 247.6 20.3 310 56-412 50-359 (597)
46 1jl5_A Outer protein YOPM; leu 99.9 4.1E-28 1.4E-32 239.1 12.2 372 54-510 31-431 (454)
47 1xku_A Decorin; proteoglycan, 99.9 1.1E-27 3.7E-32 227.4 13.0 269 230-506 52-330 (330)
48 2ft3_A Biglycan; proteoglycan, 99.9 7.7E-28 2.6E-32 228.5 9.1 246 230-506 78-331 (332)
49 1xku_A Decorin; proteoglycan, 99.9 1.3E-26 4.5E-31 220.0 16.4 245 230-482 76-330 (330)
50 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-26 5E-31 219.7 12.3 245 132-414 34-280 (332)
51 1ogq_A PGIP-2, polygalacturona 99.9 8.9E-27 3E-31 218.7 7.2 249 57-336 50-301 (313)
52 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-27 6.4E-32 223.3 2.5 248 255-506 51-302 (313)
53 2z80_A TOLL-like receptor 2, v 99.9 6.2E-26 2.1E-30 217.3 12.2 279 228-510 29-316 (353)
54 2z80_A TOLL-like receptor 2, v 99.9 3.1E-24 1E-28 205.6 18.0 257 56-340 51-315 (353)
55 3zyj_A Leucine-rich repeat-con 99.9 1.8E-24 6.3E-29 213.4 12.3 247 231-483 44-291 (440)
56 3zyi_A Leucine-rich repeat-con 99.9 2.2E-24 7.5E-29 213.7 12.4 246 232-483 56-302 (452)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-24 5.9E-29 200.8 8.9 224 233-484 14-238 (285)
58 3o53_A Protein LRIM1, AGAP0063 99.9 7.3E-25 2.5E-29 206.3 5.8 237 229-480 33-271 (317)
59 2z66_A Variable lymphocyte rec 99.9 1.3E-24 4.4E-29 204.0 7.5 247 233-484 10-261 (306)
60 1ozn_A Reticulon 4 receptor; N 99.9 6.7E-24 2.3E-28 196.8 11.9 225 281-509 14-239 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 7.5E-24 2.6E-28 209.8 12.7 226 230-457 75-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 7.8E-24 2.7E-28 208.9 12.7 226 230-457 64-290 (440)
63 2ast_B S-phase kinase-associat 99.9 5.4E-23 1.8E-27 195.8 18.0 260 1-312 11-282 (336)
64 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-24 9.6E-29 202.3 7.2 261 230-505 10-272 (317)
65 2z66_A Variable lymphocyte rec 99.9 1.9E-24 6.6E-29 202.8 6.0 261 230-492 28-295 (306)
66 2ca6_A RAN GTPase-activating p 99.9 2.5E-22 8.5E-27 194.8 19.6 237 248-485 26-317 (386)
67 4fcg_A Uncharacterized protein 99.9 3.5E-23 1.2E-27 195.3 10.5 222 55-310 79-309 (328)
68 2ast_B S-phase kinase-associat 99.9 1.1E-21 3.6E-26 186.8 19.7 252 230-489 47-311 (336)
69 1wwl_A Monocyte differentiatio 99.9 2.4E-24 8.2E-29 202.2 1.3 204 300-510 93-311 (312)
70 4fcg_A Uncharacterized protein 99.9 1.6E-23 5.6E-28 197.6 6.0 236 253-509 80-315 (328)
71 2ca6_A RAN GTPase-activating p 99.9 1.2E-21 4.2E-26 189.9 19.1 255 226-481 28-340 (386)
72 3goz_A Leucine-rich repeat-con 99.9 2.8E-22 9.6E-27 192.3 13.3 252 234-486 2-299 (362)
73 3oja_A Leucine-rich immune mol 99.9 6.8E-23 2.3E-27 203.9 7.8 236 253-503 33-270 (487)
74 1wwl_A Monocyte differentiatio 99.9 9.9E-24 3.4E-28 198.1 1.2 247 229-486 42-311 (312)
75 3oja_A Leucine-rich immune mol 99.9 6.3E-23 2.2E-27 204.1 5.8 238 227-479 31-270 (487)
76 3goz_A Leucine-rich repeat-con 99.9 6.8E-21 2.3E-25 182.7 16.9 252 258-510 2-299 (362)
77 3g06_A SSPH2 (leucine-rich rep 99.8 9E-21 3.1E-25 192.3 16.8 224 230-491 81-304 (622)
78 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-20 6.3E-25 190.1 18.8 269 130-470 39-307 (622)
79 2o6q_A Variable lymphocyte rec 99.8 2.6E-21 9E-26 177.6 11.0 201 279-483 17-217 (270)
80 2z62_A TOLL-like receptor 4, v 99.8 1.1E-21 3.9E-26 180.8 8.3 205 278-484 28-237 (276)
81 2o6q_A Variable lymphocyte rec 99.8 6.7E-21 2.3E-25 174.8 11.3 201 254-457 16-216 (270)
82 2z62_A TOLL-like receptor 4, v 99.8 3.8E-21 1.3E-25 177.3 9.7 202 254-456 28-234 (276)
83 3rfs_A Internalin B, repeat mo 99.8 1.8E-20 6.1E-25 172.1 8.5 187 299-495 60-246 (272)
84 1h6u_A Internalin H; cell adhe 99.8 2.2E-19 7.5E-24 167.8 15.3 193 276-485 39-231 (308)
85 4glp_A Monocyte differentiatio 99.8 2.7E-20 9.3E-25 174.5 8.7 203 302-510 91-309 (310)
86 3rfs_A Internalin B, repeat mo 99.8 3.2E-20 1.1E-24 170.5 8.8 200 298-509 37-236 (272)
87 1p9a_G Platelet glycoprotein I 99.8 5.4E-20 1.9E-24 170.1 10.1 203 274-484 6-208 (290)
88 1h6u_A Internalin H; cell adhe 99.8 7.5E-19 2.6E-23 164.2 14.9 194 251-461 38-231 (308)
89 2xwt_C Thyrotropin receptor; s 99.8 2.7E-20 9.3E-25 167.6 4.6 197 303-505 32-236 (239)
90 4glp_A Monocyte differentiatio 99.8 9.8E-20 3.4E-24 170.7 8.5 230 230-485 64-308 (310)
91 1p9a_G Platelet glycoprotein I 99.8 1.8E-19 6.2E-24 166.6 10.2 201 250-457 6-206 (290)
92 3m19_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 161.5 8.5 180 302-485 14-193 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 2.8E-19 9.6E-24 160.9 5.8 178 255-435 32-218 (239)
94 3m19_A Variable lymphocyte rec 99.8 1.9E-18 6.6E-23 156.6 9.6 180 278-461 14-193 (251)
95 1h6t_A Internalin B; cell adhe 99.7 3.4E-17 1.2E-21 151.5 11.5 172 299-485 43-214 (291)
96 1h6t_A Internalin B; cell adhe 99.7 1.9E-16 6.6E-21 146.4 12.2 172 275-461 43-214 (291)
97 4ezg_A Putative uncharacterize 99.7 4.9E-17 1.7E-21 141.3 7.7 153 349-509 43-195 (197)
98 3sb4_A Hypothetical leucine ri 99.7 2E-17 6.8E-22 156.3 5.1 282 230-527 25-327 (329)
99 2o6s_A Variable lymphocyte rec 99.7 3.8E-17 1.3E-21 143.5 5.4 162 326-495 28-189 (208)
100 1m9s_A Internalin B; cell inva 99.7 1E-16 3.4E-21 162.5 8.5 174 299-487 40-213 (605)
101 3sb4_A Hypothetical leucine ri 99.6 1.3E-16 4.5E-21 150.7 7.5 219 277-502 100-328 (329)
102 1m9s_A Internalin B; cell inva 99.6 3.9E-16 1.4E-20 158.2 10.3 173 274-461 39-211 (605)
103 4ezg_A Putative uncharacterize 99.6 4.2E-16 1.4E-20 135.4 8.5 151 301-484 43-194 (197)
104 2o6s_A Variable lymphocyte rec 99.6 1.5E-16 5.3E-21 139.6 5.6 171 329-510 10-180 (208)
105 2v9t_B SLIT homolog 2 protein 99.6 1.4E-16 4.6E-21 140.9 5.1 151 329-483 14-164 (220)
106 2xot_A Amphoterin-induced prot 99.6 1.5E-16 5E-21 152.3 5.4 176 305-484 21-202 (361)
107 4ay9_X Follicle-stimulating ho 99.6 3.1E-16 1.1E-20 149.4 7.4 137 57-194 30-168 (350)
108 4fs7_A Uncharacterized protein 99.6 1E-15 3.6E-20 148.3 10.4 335 68-475 58-392 (394)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 2.4E-16 8.3E-21 139.2 5.1 152 329-484 14-166 (220)
110 2xot_A Amphoterin-induced prot 99.6 1.3E-15 4.5E-20 145.6 9.5 174 281-457 21-200 (361)
111 2v9t_B SLIT homolog 2 protein 99.6 7.7E-16 2.6E-20 136.0 6.9 150 305-457 14-163 (220)
112 3e6j_A Variable lymphocyte rec 99.6 8.4E-16 2.9E-20 136.8 7.0 152 328-484 21-172 (229)
113 1xeu_A Internalin C; cellular 99.6 6.5E-16 2.2E-20 140.5 5.8 169 302-486 19-187 (263)
114 4ay9_X Follicle-stimulating ho 99.6 1.6E-16 5.4E-21 151.4 1.9 239 233-480 12-255 (350)
115 4fs7_A Uncharacterized protein 99.6 9.6E-16 3.3E-20 148.6 6.7 336 94-501 59-394 (394)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 1.4E-15 4.7E-20 134.4 7.0 149 305-456 14-163 (220)
117 4fdw_A Leucine rich hypothetic 99.6 2.6E-15 8.9E-20 144.6 8.7 264 230-507 113-382 (401)
118 3un9_A NLR family member X1; l 99.6 2.5E-14 8.5E-19 136.4 14.4 185 325-510 71-285 (372)
119 3cvr_A Invasion plasmid antige 99.6 8.7E-15 3E-19 146.6 11.2 187 278-493 59-252 (571)
120 3cvr_A Invasion plasmid antige 99.6 6.9E-15 2.4E-19 147.4 10.0 189 254-471 59-254 (571)
121 3e6j_A Variable lymphocyte rec 99.6 5.4E-15 1.9E-19 131.5 7.8 149 304-456 21-169 (229)
122 4fdw_A Leucine rich hypothetic 99.6 1.2E-14 4.1E-19 140.0 10.7 219 231-483 158-382 (401)
123 3un9_A NLR family member X1; l 99.5 4.7E-14 1.6E-18 134.5 14.2 185 301-486 71-285 (372)
124 1xeu_A Internalin C; cellular 99.5 2.8E-15 9.7E-20 136.3 5.3 168 278-461 19-186 (263)
125 1dce_A Protein (RAB geranylger 99.5 5.5E-16 1.9E-20 156.2 -5.7 195 325-527 348-566 (567)
126 2je0_A Acidic leucine-rich nuc 99.5 8.1E-14 2.8E-18 115.0 7.7 61 396-456 62-123 (149)
127 2je0_A Acidic leucine-rich nuc 99.5 1.7E-13 5.9E-18 113.0 9.6 128 326-455 17-149 (149)
128 2ell_A Acidic leucine-rich nuc 99.5 1.7E-14 5.8E-19 121.8 3.2 110 396-508 47-160 (168)
129 1dce_A Protein (RAB geranylger 99.5 6.3E-16 2.2E-20 155.8 -6.9 208 276-502 347-567 (567)
130 2ell_A Acidic leucine-rich nuc 99.4 6.4E-14 2.2E-18 118.2 5.3 132 351-485 25-161 (168)
131 4gt6_A Cell surface protein; l 99.4 8.2E-13 2.8E-17 127.9 12.0 335 69-456 51-388 (394)
132 1w8a_A SLIT protein; signaling 99.4 7.5E-14 2.6E-18 120.4 3.1 129 353-485 11-140 (192)
133 1a9n_A U2A', U2A'; complex (nu 99.4 1.8E-13 6.2E-18 116.3 4.2 107 399-508 43-153 (176)
134 2o6r_A Variable lymphocyte rec 99.4 4.9E-13 1.7E-17 113.8 6.4 130 352-485 9-138 (177)
135 2wfh_A SLIT homolog 2 protein 99.4 2.6E-13 8.9E-18 116.9 4.3 127 353-484 13-139 (193)
136 4gt6_A Cell surface protein; l 99.4 1.9E-12 6.5E-17 125.3 10.9 134 365-506 256-389 (394)
137 1w8a_A SLIT protein; signaling 99.4 2.9E-13 9.9E-18 116.7 4.4 128 329-460 11-139 (192)
138 1a9n_A U2A', U2A'; complex (nu 99.3 9.1E-13 3.1E-17 111.9 6.3 108 375-485 43-154 (176)
139 2wfh_A SLIT homolog 2 protein 99.3 1.1E-12 3.9E-17 112.9 6.3 125 329-457 13-137 (193)
140 2o6r_A Variable lymphocyte rec 99.3 1.3E-12 4.3E-17 111.2 6.1 125 329-456 10-134 (177)
141 1ds9_A Outer arm dynein; leuci 99.3 2.6E-14 9E-19 124.1 -5.8 133 369-509 43-186 (198)
142 1ds9_A Outer arm dynein; leuci 99.2 8.5E-14 2.9E-18 120.9 -6.0 132 346-485 44-186 (198)
143 4b8c_D Glucose-repressible alc 99.2 1E-12 3.4E-17 136.8 0.1 191 254-456 173-369 (727)
144 4h09_A Hypothetical leucine ri 99.2 9E-11 3.1E-15 113.1 12.8 121 346-471 236-356 (379)
145 4b8c_D Glucose-repressible alc 99.2 2.6E-12 8.8E-17 133.7 1.7 149 226-384 220-369 (727)
146 3e4g_A ATP synthase subunit S, 99.2 5.3E-11 1.8E-15 98.3 8.8 102 422-524 61-170 (176)
147 4h09_A Hypothetical leucine ri 99.2 1E-10 3.6E-15 112.6 11.5 144 298-446 213-356 (379)
148 3g39_A Variable lymphocyte rec 99.2 1.8E-11 6.2E-16 103.0 4.9 105 376-484 11-115 (170)
149 2r9u_A Variable lymphocyte rec 99.1 4.5E-11 1.5E-15 100.9 4.6 104 377-484 15-118 (174)
150 2ra8_A Uncharacterized protein 99.0 2.2E-09 7.5E-14 101.3 14.1 156 345-506 167-341 (362)
151 3g39_A Variable lymphocyte rec 99.0 7.7E-11 2.6E-15 99.1 3.6 103 351-456 10-112 (170)
152 3e4g_A ATP synthase subunit S, 99.0 3.5E-10 1.2E-14 93.3 6.5 88 58-145 62-153 (176)
153 2r9u_A Variable lymphocyte rec 99.0 1.3E-10 4.5E-15 98.0 3.8 103 352-457 14-116 (174)
154 2ra8_A Uncharacterized protein 99.0 1.5E-09 5.1E-14 102.4 10.9 145 368-516 166-328 (362)
155 1io0_A Tropomodulin; LRR prote 99.0 3.6E-09 1.2E-13 90.1 11.8 121 369-510 31-166 (185)
156 1io0_A Tropomodulin; LRR prote 98.9 2.2E-08 7.7E-13 85.1 13.3 116 341-456 27-161 (185)
157 2ifg_A High affinity nerve gro 98.8 2.5E-09 8.7E-14 101.5 6.0 102 379-484 13-116 (347)
158 2ifg_A High affinity nerve gro 98.7 9.1E-09 3.1E-13 97.7 4.9 104 353-460 11-116 (347)
159 1pgv_A TMD-1, tropomodulin TMD 98.1 1.9E-05 6.3E-10 66.5 10.9 86 371-456 38-136 (197)
160 3rw6_A Nuclear RNA export fact 98.1 1.5E-06 5.2E-11 77.5 3.0 41 396-436 168-210 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 5.7E-05 1.9E-09 63.5 11.2 110 347-456 38-167 (197)
162 3rw6_A Nuclear RNA export fact 98.0 3.7E-05 1.3E-09 68.5 10.3 85 50-137 163-257 (267)
163 3rfe_A Platelet glycoprotein I 95.0 0.016 5.4E-07 45.3 3.5 53 402-457 12-66 (130)
164 3rfe_A Platelet glycoprotein I 93.4 0.035 1.2E-06 43.3 2.3 55 426-484 12-68 (130)
165 2lz0_A Uncharacterized protein 86.3 0.62 2.1E-05 34.0 3.5 48 67-116 6-53 (100)
166 2lz0_A Uncharacterized protein 77.9 0.6 2.1E-05 34.1 0.7 44 411-455 9-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-46 Score=393.55 Aligned_cols=465 Identities=21% Similarity=0.187 Sum_probs=276.9
Q ss_pred ccceeccCCCCC--CCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCC
Q 009672 32 ALQDLCLGQYPG--VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109 (529)
Q Consensus 32 ~l~~l~l~~~~~--~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 109 (529)
.++++.+..+.- ....+ ......+++|++|++++|.+++..+ ++.+++|++|++++| .+....+. ++.+++|+
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVG-WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp TCSEEECCSSCCEEETHHH-HHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCC
T ss_pred CCCEEECCCCccCCcCChh-hhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCC-cCCCCCcc-cccCCCCC
Confidence 388888876641 11111 1224457788888888888765433 377888888888887 45544333 77888888
Q ss_pred EEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccC-CCCCCeEEcc
Q 009672 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS 188 (529)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~ 188 (529)
+|++++|. +++..|..+.++++|++|++++|......+. . .+++|++|++++| .+.+..+..+.. +++|++|+++
T Consensus 227 ~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 227 HLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp EEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECC
T ss_pred EEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCc-c-ccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECc
Confidence 88888887 5667788888888888888888753322222 1 5566666666653 333334444443 3566666666
Q ss_pred CCCCChhHHHHhhccC-ccchhhhhhhhHHHhhhhhh-hhcccCCccEEEccCCC-------------------------
Q 009672 189 CSKVTDSGIAYLKGLS-ISSVIFILCSMIIRLFCLHV-FLTSLQKLTLLNLEGCP------------------------- 241 (529)
Q Consensus 189 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~------------------------- 241 (529)
+|.+++..+..+..+. +..+.+...... ..++. .+..+++|++|++++|.
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 5555433333332221 000000000000 00111 13333444444444443
Q ss_pred CCHHHHHHhhc--CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhh
Q 009672 242 VTAACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319 (529)
Q Consensus 242 ~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 319 (529)
+.+..+..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++.+|.+....+
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 33322222322 4456666666665555555556666666666666666655555566666667777766666665555
Q ss_pred hhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCC
Q 009672 320 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 399 (529)
Q Consensus 320 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 399 (529)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..++.+++|+.|++++|.+.+..+..++.+++
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 56666667777777776666555566666677777777777666556666666677777777777666555556666677
Q ss_pred CCEEecCCCCCChHHHHh--------------------------------------------------------------
Q 009672 400 LTHLDLFGARITDSGAAY-------------------------------------------------------------- 417 (529)
Q Consensus 400 L~~L~l~~~~l~~~~~~~-------------------------------------------------------------- 417 (529)
|+.|++++|.+.+..|..
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 777777766554222211
Q ss_pred --------hhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHH
Q 009672 418 --------LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489 (529)
Q Consensus 418 --------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (529)
+..+++|+.|++++|.+++..+..++.++.|+.|++++| .++..+|..++.+++|+.|++++|.+++..|.
T Consensus 620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 122455666777777776666666777777777777777 66666666677777777777777777766666
Q ss_pred hccCCCCCcEEeecCccCCh
Q 009672 490 HLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 490 ~~~~~~~L~~L~l~~~~~~~ 509 (529)
.+..+++|++|++++|+++.
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEE
T ss_pred HHhCCCCCCEEECcCCcccc
Confidence 66777777777777776553
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.9e-45 Score=376.87 Aligned_cols=448 Identities=20% Similarity=0.221 Sum_probs=244.1
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|++++|.+++..+..|+++++|++|++++| .+....+..|+.+++|++|++++|. ++...|..|.++++|++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKH 109 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccE
Confidence 356888888888888777777888888888888887 5777777778888888888888887 55666777888888888
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCcc---chhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSIS---SVIFIL 212 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~---~~~~~~ 212 (529)
|++++|......+..++.+++|++|++++ +.+.......+..+++|++|++++|.++...+..+..+.-. ...+..
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eeccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 88888765544456677888888888887 34554343445557888888888887776555444433211 111000
Q ss_pred hhh-----------------------HHH-hhh----------------------hhhhhccc--CCccEEEccCCCCCH
Q 009672 213 CSM-----------------------IIR-LFC----------------------LHVFLTSL--QKLTLLNLEGCPVTA 244 (529)
Q Consensus 213 ~~~-----------------------~~~-~~~----------------------~~~~~~~~--~~L~~L~l~~~~~~~ 244 (529)
... ... ... ....+..+ .+|+.|+++++.+..
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 000 000 000 00001111 145555555555554
Q ss_pred HHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC-hhhhhhhc
Q 009672 245 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLT 323 (529)
Q Consensus 245 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~ 323 (529)
..+..|..+++|+.|++++|.+.. .|..+..+++|++|++++|.+.+..+..+..+++|++|++.+|.+. ......+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 444445555556666665555543 2334445555555555555555444444555555555555555433 12222344
Q ss_pred CCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHH-HHHhcCCCC
Q 009672 324 GLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGL 400 (529)
Q Consensus 324 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 400 (529)
.+++|+.|++++|.+.... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 5555555555555544433 3334445555555555555544444444455555555555554443221 123444555
Q ss_pred CEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh---hhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeee
Q 009672 401 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 477 (529)
Q Consensus 401 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 477 (529)
+.|++++|.+....+..+..+++|++|++++|.+.+... ..+..+++|++|++++| .++...+..+..+++|+.|+
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEE
Confidence 555555555544444444445555555555554443211 23444455555555555 44444444444455555555
Q ss_pred ccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 478 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
+++|++.+..+..+..+++| .|++++|+++.
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 55555554444444445555 55555554443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-45 Score=385.70 Aligned_cols=496 Identities=19% Similarity=0.165 Sum_probs=353.0
Q ss_pred ccCChhhhh--hhccCc-cceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhh---ccCCCCCCeEeccCC
Q 009672 18 RCLTEVSLE--AFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH---LKDCSNLQSLDFNFC 91 (529)
Q Consensus 18 ~~~~~~~~~--~~~~~~-l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~ 91 (529)
+.++...+. .+..+. ++++.+..+.-.. ..........++|++|++++|.+++..+.. ++.+++|++|++++|
T Consensus 110 n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp SEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CcCCCcCCChHHHhCCCCCCEEECcCCccCC-cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 344433333 666665 9999997663100 000011135788999999999999877766 789999999999998
Q ss_pred cccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCcc
Q 009672 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171 (529)
Q Consensus 92 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 171 (529)
. +... ..+..+++|++|++++|. ++...|. +.++++|++|++++|......+..+..+++|++|++++|. +.+.
T Consensus 189 ~-l~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~ 262 (768)
T 3rgz_A 189 K-ISGD--VDVSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ-FVGP 262 (768)
T ss_dssp E-EESC--CBCTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC-CEES
T ss_pred c-cccc--CCcccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc-ccCc
Confidence 4 5432 334789999999999998 4555555 8899999999999987655667889999999999999964 4433
Q ss_pred ccccccCCCCCCeEEccCCCCChhHHHHhhcc--CccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHH-H
Q 009672 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--SISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACL-D 248 (529)
Q Consensus 172 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 248 (529)
.+.. .+++|++|++++|.+++..+..+... .+..+.+..... ....+..+..+++|++|++++|.+.+..+ .
T Consensus 263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF---YGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE---EECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC---CCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence 3332 78999999999998775433332111 111111111110 11345667888999999999998874333 4
Q ss_pred HhhcCCCCCeEecCCCcCChhhhHhhhcCC-C--------------------------ccEEEccCCCCChHHHHhhcCC
Q 009672 249 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG-S--------------------------LKVLNLGFNEITDECLVHLKGL 301 (529)
Q Consensus 249 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~--------------------------L~~L~l~~~~~~~~~~~~~~~~ 301 (529)
.+..+++|++|++++|.+....+..+..++ + |++|++++|.+.+..+..+..+
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 488889999999998887654454444433 4 4444444444444445556666
Q ss_pred CCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEEC
Q 009672 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 381 (529)
++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 77777777777665555566666777777777777776666666677777777777777777666667777788888888
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhh--------------------
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-------------------- 441 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-------------------- 441 (529)
++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 888777665667777788888888888877766777778888888888887665332221
Q ss_pred --------------------------------------------------ccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 442 --------------------------------------------------IKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 442 --------------------------------------------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
+..+++|+.|++++| .++..+|..++.++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMP 656 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCCHHHhccc
Confidence 223467888888888 78878888889999
Q ss_pred CCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
.|+.|++++|.+++..|..++.+++|+.|++++|+++....+.+. .++.|+.|++
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~l 711 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDL 711 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSEEEC
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEEC
Confidence 999999999999988888899999999999999988866555565 6778887764
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.2e-44 Score=368.14 Aligned_cols=470 Identities=20% Similarity=0.168 Sum_probs=374.8
Q ss_pred ccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEE
Q 009672 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (529)
Q Consensus 32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 111 (529)
.++.+.+.... +.... ......+++|++|++++|.+++..+.+|+.+++|++|++++| .+....+..|+.+++|++|
T Consensus 34 ~l~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 34 STECLEFSFNV-LPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TCCEEECTTCC-CSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEE
T ss_pred cCcEEEccCCc-cCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEe
Confidence 46666666543 11110 112245788999999999998888888999999999999988 6777778889999999999
Q ss_pred EcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCC--eEEccC
Q 009672 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK--SLQISC 189 (529)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~ 189 (529)
++++|. ++...+..+.++++|++|++++|.........+..+++|++|++++ +.+....+..++.+++|+ .|++++
T Consensus 111 ~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 111 FFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp ECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEecCC
Confidence 999998 5665567788999999999999865544445555589999999998 556666667788888888 788888
Q ss_pred CCCChhHHHHhhccCcc-----------------------ch----------------hhhhhh--h------H-HHh-h
Q 009672 190 SKVTDSGIAYLKGLSIS-----------------------SV----------------IFILCS--M------I-IRL-F 220 (529)
Q Consensus 190 ~~~~~~~~~~l~~~~~~-----------------------~~----------------~~~~~~--~------~-~~~-~ 220 (529)
|.++...+..+....+. .. .+.... . . ... .
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 87776543332211000 00 000000 0 0 000 1
Q ss_pred hhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH-Hhhc
Q 009672 221 CLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLK 299 (529)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~ 299 (529)
..+..+..+++|++|+++++.+.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ ..+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 122347888999999999999885 45678889999999999999998878888999999999999998764443 3478
Q ss_pred CCCCCCEEECCCCCCChhh--hhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhh-hhhcCCCCC
Q 009672 300 GLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSL 376 (529)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 376 (529)
.+++|++|++++|.+.... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 8999999999999887655 5678899999999999999888777888999999999999998876544 347889999
Q ss_pred cEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH---HHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEec
Q 009672 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 453 (529)
+.|++++|.+....+..++.+++|+.|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 99999999998877777889999999999999987632 246788999999999999999988889999999999999
Q ss_pred CCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 454 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
++| .++...+..+..++.| .|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 508 s~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 508 SHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCC-ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999 8999999999999999 99999999998888888889999999999998875
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.2e-43 Score=365.48 Aligned_cols=468 Identities=21% Similarity=0.220 Sum_probs=252.3
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+++|++|+++++.+++..+..++++++|++|++++| .+.......|+.+++|++|++++|. ++...+..|.++++|+
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCC
Confidence 4566777777777776666666777777777777766 4555555566777777777777766 4444455666777777
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCcccccccc--CCCCCCeEEccCCCCChhHHHHhhccC------cc
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLS------IS 206 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~------~~ 206 (529)
+|++++|......+..+..+++|++|++++| .+....+..+. .+++|++|++++|.++...+..+..+. +.
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 7777776544444455666777777777663 34433333332 446667777766665544333332221 00
Q ss_pred chhhhhhhhHH-------------------HhhhhhhhhcccC--CccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCc
Q 009672 207 SVIFILCSMII-------------------RLFCLHVFLTSLQ--KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 265 (529)
Q Consensus 207 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 265 (529)
...+....... -....+..+..++ +|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 00000000000 0000112233332 26666666655555444455555566666665555
Q ss_pred CChhhhHhhh---------------------------------cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCC
Q 009672 266 LSDDGCEKFS---------------------------------KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312 (529)
Q Consensus 266 ~~~~~~~~l~---------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (529)
+....+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 5443333333 3444555555555444433333444445555544443
Q ss_pred C----------------------------CChhhhhhhcCCCCCCeEEcCCCccChhh-hhhccCCCCCCeEeccCCCCC
Q 009672 313 G----------------------------IGDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGIS 363 (529)
Q Consensus 313 ~----------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 363 (529)
. +....+..+..+++|+.|++++|.+.... ...+..+++|+++++++|.+.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 2 22222223333444444444444433211 123334444444444444443
Q ss_pred hhhhhhhcCCCCCcEEECCCCCCCH--HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhh-
Q 009672 364 DGSLRKLAGLSSLKSLNLDARQITD--TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK- 440 (529)
Q Consensus 364 ~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~- 440 (529)
......+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++...+..+.++++|++|++++|.++.....
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 3333344444455555555544431 1233455667777777777777766666667777777777777776654221
Q ss_pred -------hccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHH
Q 009672 441 -------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513 (529)
Q Consensus 441 -------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 513 (529)
.+.++++|++|++++| .++...+..|.++++|+.|++++|.++...+..|..+++|+.|++++|+++.....
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred ccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 2456677777777777 66655555677777777777777777766666667777777888877777765544
Q ss_pred HhhcCCCCCceecC
Q 009672 514 RLQSRDLPNLVSFR 527 (529)
Q Consensus 514 ~l~~~~~~~l~~l~ 527 (529)
.+. ..+++|+.++
T Consensus 603 ~~~-~~~~~L~~l~ 615 (680)
T 1ziw_A 603 VFG-PAFRNLTELD 615 (680)
T ss_dssp HHH-HHHTTCSEEE
T ss_pred Hhc-ccccccCEEE
Confidence 332 2344555543
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-42 Score=363.30 Aligned_cols=466 Identities=20% Similarity=0.217 Sum_probs=309.4
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+++++.+++..+..|+++++|++|++++| .+....+..|+++++|++|++++|. ++...+..|.++++|++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCE
Confidence 367999999999999888888999999999999998 6888888889999999999999998 55555557999999999
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccC---ccchhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLS---ISSVIFIL 212 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~~~~~~~~ 212 (529)
|++++|......+..++.+++|++|++++| .+....+..+.++++|++|++++|.++......+.... +..+.+..
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999998655445577899999999999994 56666677888999999999999998876655443221 11111111
Q ss_pred hhhHH-------------------------HhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCC--CCCeEecCCCc
Q 009672 213 CSMII-------------------------RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQ 265 (529)
Q Consensus 213 ~~~~~-------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~ 265 (529)
..... ....+...+ ..++|+.|+++++.+.+..+..+..++ +|+.|++++|.
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 10000 000011111 236778888888877766666666654 49999999999
Q ss_pred CChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC---------hhhhhhhcCCCCCCeEEcCCC
Q 009672 266 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG---------DEGLVNLTGLCNLKCLELSDT 336 (529)
Q Consensus 266 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~ 336 (529)
+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++.++... ......+..+++|+.|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 88877778888999999999999887665555666666666666544221 111113344455555555555
Q ss_pred ccChhhhhhccCCCCCCe----------------------------EeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH
Q 009672 337 QVGSSGLRHLSGLTNLES----------------------------INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388 (529)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~----------------------------L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 388 (529)
.+....+..+..+++|+. +++++|.+....+..+..+++|+.|++++|.+.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 544433333333333333 3333444444444455566667777776666643
Q ss_pred H-HHHHHhcCCCCCEEecCCCCCChH--------------------------HHHhhhcCCCCcEEEccCCCCChhhhhh
Q 009672 389 T-GLAALTSLTGLTHLDLFGARITDS--------------------------GAAYLRNFKNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 389 ~-~~~~l~~~~~L~~L~l~~~~l~~~--------------------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 441 (529)
. ....+..+++|+.|++++|.+... .+..+.++++|+.|++++|.++...+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 2 123445555566666655554433 2344556667777777777776665566
Q ss_pred ccCCCCCCeEecCCCCCCChhHHH--------HHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHH
Q 009672 442 IKDLSSLTLLNLSQNCNLTDKTLE--------LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 513 (529)
Q Consensus 442 ~~~~~~L~~L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 513 (529)
+.++++|++|++++| .++..... .+..+++|+.|++++|.+.......|..+++|+.|++++|+++.....
T Consensus 500 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 500 LEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 667777777777777 55543221 255677777777777777765555677777888888888877754444
Q ss_pred HhhcCCCCCceecCC
Q 009672 514 RLQSRDLPNLVSFRP 528 (529)
Q Consensus 514 ~l~~~~~~~l~~l~~ 528 (529)
.+. .+++|+.|++
T Consensus 579 ~~~--~l~~L~~L~L 591 (680)
T 1ziw_A 579 VFN--NQVSLKSLNL 591 (680)
T ss_dssp TTT--TCTTCCEEEC
T ss_pred HhC--CCCCCCEEEC
Confidence 333 5667776654
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-42 Score=356.42 Aligned_cols=437 Identities=22% Similarity=0.207 Sum_probs=269.9
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+++++.+++..+..|+++++|++|++++| .+....+..|.++++|++|++++|. ++...|..|.++++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCE
Confidence 377999999999999888888999999999999988 6888778889999999999999998 66777888999999999
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCCCChhHHHHhhcc---C--ccchh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---S--ISSVI 209 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~--~~~~~ 209 (529)
|++++|......+..++.+++|++|++++|. +.+ ..+..++++++|++|++++|.++...+..+..+ . .....
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 9999986555555678999999999999854 443 457788999999999999998886544433222 1 00010
Q ss_pred hhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCH-HHHHH---------------------------------------
Q 009672 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTA-ACLDS--------------------------------------- 249 (529)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~--------------------------------------- 249 (529)
+.... ....+.......+|+.|+++++.+.. ..+..
T Consensus 188 l~~n~----l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 188 MSLNP----IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CTTCC----CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ccCCC----cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 00000 00011111122356666666555431 22222
Q ss_pred -----------------hhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCC
Q 009672 250 -----------------LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312 (529)
Q Consensus 250 -----------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (529)
+..+++|+.++++++.+.... .+..+++|++|++++|.+. ..+ .+ .+++|+.|++.+|
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESC
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCC
Confidence 344566666666666664432 5556667777777777663 333 23 5566666666655
Q ss_pred CCChhhhhhhcCCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHH
Q 009672 313 GIGDEGLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 390 (529)
Q Consensus 313 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 390 (529)
..... ..+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....
T Consensus 339 ~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 339 KGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTT
T ss_pred cCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCcc
Confidence 32221 13445566666666666554432 344455566666666666554422 44455556666666665555443
Q ss_pred H-HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh-hhhhccCCCCCCeEecCCCCCCChhHHHHHh
Q 009672 391 L-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468 (529)
Q Consensus 391 ~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 468 (529)
+ ..+..+++|+.|++++|.++...+..+.++++|++|++++|.+++. .+..+..+++|++|++++| .++...+..+.
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 494 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTT
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhc
Confidence 3 3444555566666666555554444555555566666655555542 3444555555555665555 55555555555
Q ss_pred CCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCC
Q 009672 469 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 469 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (529)
.+++|+.|++++|++.+..+..+..+++|++|++++|+++
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 5555555555555555555555555555555555555555
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.9e-42 Score=353.35 Aligned_cols=442 Identities=20% Similarity=0.181 Sum_probs=321.4
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+++|++|++++|.+++..+.+|+.+++|++|++++| .+....+..|+.+++|++|++++|. ++...+..++++++|+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLK 131 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCC
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCC
Confidence 4566777777777776666666677777777777766 4665556666777777777777666 3443434466677777
Q ss_pred EEeccCccccc-cccccccCCCcCcEEeccCCcccCccccccccCCC---------------------------CCCeEE
Q 009672 135 KLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT---------------------------NLKSLQ 186 (529)
Q Consensus 135 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~---------------------------~L~~L~ 186 (529)
+|++++|.... ..+..++++++|++|++++| .+.+..+..+..++ +|++|+
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 77777664333 23455666677777777663 34433333333322 455555
Q ss_pred ccCCCCChh-HHHHhhccC---ccchhhhh-----------hh----------------hHHHhhhhhhhhcccCCccEE
Q 009672 187 ISCSKVTDS-GIAYLKGLS---ISSVIFIL-----------CS----------------MIIRLFCLHVFLTSLQKLTLL 235 (529)
Q Consensus 187 l~~~~~~~~-~~~~l~~~~---~~~~~~~~-----------~~----------------~~~~~~~~~~~~~~~~~L~~L 235 (529)
+++|.++.. .+..+..+. ........ .. ...........+..+++|+.|
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 555544421 122222211 00000000 00 000000111126778999999
Q ss_pred EccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCC
Q 009672 236 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 315 (529)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 315 (529)
+++++.+.... .+..+++|+.|++++|.+.. .+ .+ .+++|++|++++|...... .+..+++|+.|++++|.+.
T Consensus 291 ~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~-lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 291 SLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQ-FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEESCCCCCCC--CCCTTCCCSEEEEESCCCSS-CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred EecCccchhhh--hccccccCCEEEcccccCcc-cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 99999887643 77889999999999999944 44 44 8899999999999654432 5678999999999999877
Q ss_pred hhh--hhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhh-hhhcCCCCCcEEECCCCCCCHHHHH
Q 009672 316 DEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLA 392 (529)
Q Consensus 316 ~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~ 392 (529)
... +..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....+.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 543 567888999999999999877644 667889999999999998877655 5788899999999999999887677
Q ss_pred HHhcCCCCCEEecCCCCCChH-HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 393 ALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 393 ~l~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
.++.+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...|..+..++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCC
Confidence 788999999999999999873 5777889999999999999999988888999999999999999 89988889999999
Q ss_pred CCCeeeccCCccChhHHHhccCCC-CCcEEeecCccCCh
Q 009672 472 GLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTA 509 (529)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 509 (529)
+|+.|++++|+++.... .+..++ +|++|++++|++.+
T Consensus 522 ~L~~L~l~~N~l~~~p~-~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 522 SLSTLDCSFNRIETSKG-ILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCCEEECTTSCCCCEES-CGGGSCTTCCEEECCSCCCCC
T ss_pred cCCEEECCCCcCcccCH-hHhhhcccCcEEEccCCCccc
Confidence 99999999999986443 477776 69999999998875
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-42 Score=350.72 Aligned_cols=438 Identities=22% Similarity=0.235 Sum_probs=323.0
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+++++.+++..+..|+.+++|++|++++| .+....+..|+.+++|++|++++|. ++...+..|.++++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccc
Confidence 357999999999999888888999999999999998 6888777889999999999999998 56667788999999999
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCCCChhHHHHhhcc---Ccc--chh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---SIS--SVI 209 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~--~~~ 209 (529)
|++++|.........++.+++|++|++++|. +.. ..+..++++++|++|++++|.++......+..+ ... ...
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 9999986444444468899999999999854 444 346788999999999999998886544433332 100 000
Q ss_pred hhhhhhHHHhhhhhhhhcccCCccEEEccCCCCC----------------------------------------------
Q 009672 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT---------------------------------------------- 243 (529)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------------------------------- 243 (529)
+...... ...+..+.. .+|+.|+++++...
T Consensus 184 l~~n~l~---~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 184 LSLNPMN---FIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CTTCCCC---EECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred cCCCCce---ecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 0000000 000111222 25677766665211
Q ss_pred ------------HHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCC
Q 009672 244 ------------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311 (529)
Q Consensus 244 ------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (529)
+..+..+..+++|+.++++++.+.. .+..+..+ +|++|++++|.+.. .+. ..+++|+.|++.+
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEES
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcC
Confidence 1111233445666666666665553 23334444 66666666666552 221 3566777777777
Q ss_pred CCCChhhhhhhcCCCCCCeEEcCCCccChhh--hhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
+........ ..+++|+.|++++|.+.... +..+..+++|+.|++++|.+...... +..+++|+.|++++|.+...
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 654432222 56789999999998877654 45667889999999999988775544 78889999999999888765
Q ss_pred HH-HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC-hhhhhhccCCCCCCeEecCCCCCCChhHHHHH
Q 009672 390 GL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 390 ~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 467 (529)
.+ ..+..+++|+.|++++|.+....+..+.++++|++|++++|.+. ...+..+..+++|++|++++| .++...+..+
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 490 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF 490 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhh
Confidence 33 35678899999999999988877778889999999999999887 345667888999999999999 8888878888
Q ss_pred hCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 468 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 468 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999999999999999998877788899999999999998875
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-39 Score=332.03 Aligned_cols=415 Identities=20% Similarity=0.193 Sum_probs=264.7
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
+++++|+++++.+++..+..|+.+++|++|++++| .+....+..|..+++|++|++++|. +++..+..|+++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence 67999999999999888888999999999999998 6888777889999999999999998 677778889999999999
Q ss_pred eccCccccc-cccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 137 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
++++|.... ..+..++.+++|++|++++|..+....+..+..+++|++|++++|.++...+..+..+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------ 171 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI------------ 171 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC------------
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc------------
Confidence 999986443 2346788999999999998765666555788899999999999998887555444443
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhh---HhhhcCCCccEEEccCCCCCh
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGFNEITD 292 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~ 292 (529)
++|+.|+++++.........+..+++|++|++++|.+..... .....+++|+.|+++++.+.+
T Consensus 172 --------------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 172 --------------RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp --------------SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred --------------ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 556666666555544333333445566666665555543210 111123344444444444433
Q ss_pred HHHHhh----cCC-----------------------------------------------------------CCCCEEEC
Q 009672 293 ECLVHL----KGL-----------------------------------------------------------TNLESLNL 309 (529)
Q Consensus 293 ~~~~~~----~~~-----------------------------------------------------------~~L~~L~l 309 (529)
..+..+ ..+ ++|+.|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 222111 112 23444444
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhh---hccCCCCCCeEeccCCCCChhhh--hhhcCCCCCcEEECCCC
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR---HLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLDAR 384 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~ 384 (529)
.+|.+.......+..+++|+.|++++|.+.+..+. .++.+++|+.|++++|.+..... ..+..+++|++|++++|
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 44433322222223455555555555555443321 23445555555555555544321 23445555555555555
Q ss_pred CCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHH
Q 009672 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464 (529)
Q Consensus 385 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 464 (529)
.++.. +..+..+++|+.|++++|.++..... -.++|++|++++|++++. ...+++|++|++++| .++.. |
T Consensus 398 ~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~---~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N-~l~~i-p 467 (549)
T 2z81_A 398 TFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTC---IPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRN-KLKTL-P 467 (549)
T ss_dssp CCCCC-CSCCCCCTTCCEEECTTSCCSCCCTT---SCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSS-CCSSC-C
T ss_pred CCccC-ChhhcccccccEEECCCCCcccccch---hcCCceEEECCCCChhhh----cccCChhcEEECCCC-ccCcC-C
Confidence 55432 22334445555555555554432211 124566666666655543 246788888888888 67743 3
Q ss_pred HHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 465 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
. ...+++|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 468 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 468 D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 3 45688899999999988887777788888999999999987653
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=362.48 Aligned_cols=448 Identities=22% Similarity=0.199 Sum_probs=274.1
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.++++++|+|++|.+++..+..|+.+++|++|++++|.......+..|+++++|++|+|++|. ++...|..|.++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccC
Confidence 357899999999999988888999999999999999866666667889999999999999998 6777789999999999
Q ss_pred EEeccCccccccccc--cccCCCcCcEEeccCCcccCccc-cccccCCCCCCeEEccCCCCChhHHHHhhcc---Cccch
Q 009672 135 KLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---SISSV 208 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~~~ 208 (529)
+|++++|......+. .++.+++|++|++++|. +.+.. ...++++++|++|++++|.++......+..+ .+..+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 999999865443343 38899999999999954 44433 3578899999999999998876544433322 11111
Q ss_pred hhhhhhhHHHhhhhhhhhcccC------CccEEEccCCCCCHHHHHHh--------------------------------
Q 009672 209 IFILCSMIIRLFCLHVFLTSLQ------KLTLLNLEGCPVTAACLDSL-------------------------------- 250 (529)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~-------------------------------- 250 (529)
.+...... ...+..+..++ .|+.|++++|.+....+..+
T Consensus 180 ~L~~n~l~---~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 180 SLAANSLY---SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp EECCSBSC---CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ECCCCccc---cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 11100000 00111112222 26666666664433222111
Q ss_pred ----hc--CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcC
Q 009672 251 ----SA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 324 (529)
Q Consensus 251 ----~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 324 (529)
.. .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 11 145666666666666555555556666666666666665554555666666666666666665555555666
Q ss_pred CCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhh--------------hh-cCCCCCcEEECCCCCCCHH
Q 009672 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--------------KL-AGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~l-~~~~~L~~L~l~~~~~~~~ 389 (529)
+++|+.|++++|.+....+..+..+++|+.|++++|.+...... .+ ....+++.+++++|.+...
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 66666666666666555555555666666666666655432110 00 0122344444544444432
Q ss_pred H-HHHHhcCCCCCEEecCCCCCChHHHH-hhhcCCCCcEEEccCCCCChh-----hhhhccCCCCCCeEecCCCCCCChh
Q 009672 390 G-LAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDA-----GVKHIKDLSSLTLLNLSQNCNLTDK 462 (529)
Q Consensus 390 ~-~~~l~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~ 462 (529)
. ...+..+++|+.|++++|.++..... .+..+++|+.|++++|.++.. .+..+.++++|++|++++| .++..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 495 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSL 495 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-ccccc
Confidence 1 22334566666666666665543221 223455666666666655422 1223455566666666666 55555
Q ss_pred HHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 463 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 463 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
.+..+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++..
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence 555566666666666666666654443332 5566666666655543
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-39 Score=335.75 Aligned_cols=428 Identities=18% Similarity=0.165 Sum_probs=335.5
Q ss_pred HHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcc------cC--------------------------c
Q 009672 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------IS--------------------------D 96 (529)
Q Consensus 49 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------~~--------------------------~ 96 (529)
.++.+....+|+.|+|+++.+++..++.++++++|++|+|++|.. +. .
T Consensus 73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~ 152 (636)
T 4eco_A 73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY 152 (636)
T ss_dssp TTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCC
T ss_pred CCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhcc
Confidence 444443336899999999999999999999999999999998842 00 0
Q ss_pred hhhhhcc-------------------CCCCCCEEEcC--CCCccchhHHHHHhCCCCCCEEeccCcccccc---------
Q 009672 97 GGLEHLR-------------------GLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHG--------- 146 (529)
Q Consensus 97 ~~~~~~~-------------------~l~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------- 146 (529)
..+..+. ....++.+.+. .|. +++ +|..++++++|++|++++|. +.+
T Consensus 153 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~-l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~ 229 (636)
T 4eco_A 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWEN 229 (636)
T ss_dssp CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSC
T ss_pred CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCC-Ccc-CCHHHhcccCCCEEECcCCc-cccccccccccc
Confidence 0000000 11123333333 233 556 78889999999999999986 445
Q ss_pred ---------cccccc--CCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCC-CCh-hHHHHhhccCccchhhhhh
Q 009672 147 ---------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGLSISSVIFILC 213 (529)
Q Consensus 147 ---------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~~~~~~~~~~ 213 (529)
.+..++ ++++|++|++++| .+.+..+..++++++|++|++++|. +++ ..+..+..+
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L---------- 298 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL---------- 298 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH----------
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh----------
Confidence 677778 9999999999995 4556677889999999999999998 886 555544332
Q ss_pred hhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHH--HhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCC
Q 009672 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291 (529)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 291 (529)
..+..+++|++|++++|.+. ..+. .+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.
T Consensus 299 ----------~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 299 ----------ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp ----------HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred ----------hccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence 01234489999999999998 4555 78999999999999999985565 7788899999999999988
Q ss_pred hHHHHhhcCCCC-CCEEECCCCCCChhhhhhhcCC--CCCCeEEcCCCccChhhhhhcc-------CCCCCCeEeccCCC
Q 009672 292 DECLVHLKGLTN-LESLNLDSCGIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTG 361 (529)
Q Consensus 292 ~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~ 361 (529)
..|..+..+++ |+.|++++|.+.. .+..+... ++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 367 -~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 367 -EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp -ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred -cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 56667888898 9999999998874 44555544 4899999999999887776676 67899999999999
Q ss_pred CChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcC-------CCCCEEecCCCCCChHHHHhhh--cCCCCcEEEccCC
Q 009672 362 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGG 432 (529)
Q Consensus 362 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~ 432 (529)
+.......+..+++|+.|++++|.+...+...+... ++|+.|++++|.++..+ ..+. .+++|++|++++|
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSS
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCC
Confidence 987666667778999999999999986533333332 28999999999999654 4454 8999999999999
Q ss_pred CCChhhhhhccCCCCCCeEecC------CCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCcc
Q 009672 433 GLTDAGVKHIKDLSSLTLLNLS------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 433 ~l~~~~~~~~~~~~~L~~L~l~------~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 506 (529)
.+++ .+..+..+++|++|+++ +| .+....|..+..+++|+.|++++|.+... +..+. ++|+.|++++|+
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEECCSCBCTTCC-BCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSCT
T ss_pred CCCC-cChhhhcCCCCCEEECCCCcccccC-cccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCCC
Confidence 9998 57778889999999995 45 56667788899999999999999999543 43343 899999999998
Q ss_pred CChh
Q 009672 507 VTAN 510 (529)
Q Consensus 507 ~~~~ 510 (529)
+++.
T Consensus 599 l~~~ 602 (636)
T 4eco_A 599 NISI 602 (636)
T ss_dssp TCEE
T ss_pred Cccc
Confidence 8764
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=325.95 Aligned_cols=437 Identities=15% Similarity=0.129 Sum_probs=332.5
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
+++++|++++|.+++..+..|+.+++|++|++++| .+....+..|+.+++|++|++++|. ++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LV-KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CC-EEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-ee-ecCcc--ccCCccEE
Confidence 67999999999998877788899999999999988 6887778889999999999999987 44 34444 78999999
Q ss_pred eccCcccccc-ccccccCCCcCcEEeccCCcccCccccccccCCCCC--CeEEccCCCC--ChhHHHHhhccCccchhhh
Q 009672 137 DLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKGLSISSVIFI 211 (529)
Q Consensus 137 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~~~~~~~~~~ 211 (529)
++++|..... .+..++.+++|++|++++| .+.. ..+..+++| ++|++++|.+ ....+..+..+......+.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 9999865442 4577888999999999884 4544 345566667 9999998887 4444444444321000000
Q ss_pred hhhhHHHhhhhhhhhcccCCccEEEccCCC-------CCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhh---cCCCcc
Q 009672 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLK 281 (529)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~ 281 (529)
..............+..+++|+.+++++|. +.+.. ..+..+++|+.|+++++.+....+..+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 000000000112234567899999999886 44443 3778899999999999887765443322 356999
Q ss_pred EEEccCCCCChHHHHhh-----cCCCCCCEEECCCCCCChhhhhhhcCC---CCCCeEEcCCCccChhhhhhccCCCCCC
Q 009672 282 VLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLE 353 (529)
Q Consensus 282 ~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (529)
+|++++|.+.+..|..+ ..+++|+.+++.++.+ ......+..+ ++|+.|++++|.+.... ....+++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 99999998876667666 7889999999998876 2221333333 68999999999876542 126789999
Q ss_pred eEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH--HHHHHhcCCCCCEEecCCCCCCh-HHHHhhhcCCCCcEEEcc
Q 009672 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEIC 430 (529)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~ 430 (529)
.|++++|.+.+..+..+..+++|+.|++++|.+... .+..++.+++|+.|++++|.+.+ .+...+..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 999999999987788889999999999999999863 34678899999999999999998 555557889999999999
Q ss_pred CCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 431 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+|.+++..+..+. ++|++|++++| .++. +|..+..+++|+.|++++|++.......+..+++|++|++++|++++.
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 9999877666554 79999999999 7884 566666899999999999999976555688999999999999999863
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=332.50 Aligned_cols=426 Identities=20% Similarity=0.217 Sum_probs=310.9
Q ss_pred eEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEecc
Q 009672 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (529)
Q Consensus 60 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (529)
++++.++.+++.. +..+ .+++++|++++| .++......|..+++|++|++++|. ++...+..|.++++|++|+++
T Consensus 10 ~~~~c~~~~l~~i-p~~l--~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 10 ITYQCMELNFYKI-PDNL--PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TEEECCSSCCSSC-CSSS--CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECT
T ss_pred cEEEeCCCCcccc-CCCc--cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCc
Confidence 4566666666532 2222 357999999998 6888878889999999999999998 667777889999999999999
Q ss_pred CccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhH-HHHhhccCccchhhhhhhhHHH
Q 009672 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLSISSVIFILCSMIIR 218 (529)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~ 218 (529)
+|......+..++.+++|++|++++| .+.......++.+++|++|++++|.++... +..+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~------------------ 145 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF------------------ 145 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG------------------
T ss_pred CCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhh------------------
Confidence 98755555678999999999999984 566555556899999999999999887532 3334
Q ss_pred hhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCC----CeEecCCCcCChhhhHhhh-------------------
Q 009672 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSDDGCEKFS------------------- 275 (529)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~------------------- 275 (529)
.++++|+.|++++|.+....+..+..+++| ..+++++|.+....+..+.
T Consensus 146 --------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 217 (570)
T 2z63_A 146 --------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217 (570)
T ss_dssp --------GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHH
T ss_pred --------cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccch
Confidence 334788888888887766555555555555 6677776665544333332
Q ss_pred --------------------------------------------------------------cCCCccEEEccCCCCChH
Q 009672 276 --------------------------------------------------------------KIGSLKVLNLGFNEITDE 293 (529)
Q Consensus 276 --------------------------------------------------------------~~~~L~~L~l~~~~~~~~ 293 (529)
.+++|++|+++++.+..
T Consensus 218 ~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~- 296 (570)
T 2z63_A 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER- 296 (570)
T ss_dssp HHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-
T ss_pred hhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-
Confidence 23344444444444331
Q ss_pred HHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhh--hhhhc
Q 009672 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS--LRKLA 371 (529)
Q Consensus 294 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~ 371 (529)
.+..+..+ +|++|++.+|.+..... ..+++|+.|++.+|.+....+. ..+++|+.|++++|.+.... +..+.
T Consensus 297 l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 297 VKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp CCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred hhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence 22233333 55555555554432111 2455666666666654433221 56788889999888887643 45677
Q ss_pred CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHH-HhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCe
Q 009672 372 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 450 (529)
Q Consensus 372 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 450 (529)
.+++|+.|++++|.+...... +..+++|+.|++++|.+....+ ..+.++++|++|++++|.+....+..+.++++|++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 888999999999888775443 7788999999999998876544 45788999999999999998877888888999999
Q ss_pred EecCCCCCCC-hhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 451 LNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 451 L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
|++++| .++ ...|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++......+. .+++|+.+++
T Consensus 450 L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l 525 (570)
T 2z63_A 450 LKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD--RLTSLQKIWL 525 (570)
T ss_dssp EECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEEC
T ss_pred EECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh--cccCCcEEEe
Confidence 999999 665 34667788899999999999999988788889999999999999999876555454 6788888765
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=344.24 Aligned_cols=426 Identities=21% Similarity=0.224 Sum_probs=271.7
Q ss_pred eEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEecc
Q 009672 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (529)
Q Consensus 60 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (529)
+..+.++++++.... -.++|++|+|++| .++...+..|.++++|++|++++|.......|..|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 567778888875432 4578999999998 68888888999999999999999965444458889999999999999
Q ss_pred CccccccccccccCCCcCcEEeccCCcccCccccc--cccCCCCCCeEEccCCCCChhHH-HHhhccCccchhhhhhhhH
Q 009672 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGI-AYLKGLSISSVIFILCSMI 216 (529)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~ 216 (529)
+|......+..++.+++|++|++++| .+.+..+. .+..+++|++|++++|.++...+ ..+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~---------------- 144 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF---------------- 144 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG----------------
T ss_pred CCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhH----------------
Confidence 98766666788999999999999995 45543443 38899999999999998876432 233
Q ss_pred HHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcC--CCCCeEecCCCcCChhhhHhhhcC-----------------
Q 009672 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKI----------------- 277 (529)
Q Consensus 217 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~----------------- 277 (529)
+++++|+.|++++|.+....+..+..+ ++|+.|++++|.+....+..+..+
T Consensus 145 ----------~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 145 ----------GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp ----------GTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred ----------hhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 334777777777776654333333322 444444444444333222222221
Q ss_pred ---------------------------------------------------CCccEEEccCCCCChHHHHhhcCCCCCCE
Q 009672 278 ---------------------------------------------------GSLKVLNLGFNEITDECLVHLKGLTNLES 306 (529)
Q Consensus 278 ---------------------------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 306 (529)
++|+.|++++|.+....+..+..+++|+.
T Consensus 215 ~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 34555555555444333334445555555
Q ss_pred EECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCC
Q 009672 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 386 (529)
Q Consensus 307 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 386 (529)
|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 55555555444444455555555555555555444444455555555555555555544444455555555555555554
Q ss_pred CHHHHHHHhcCCCCCEEecCCCCC--------------------ChHH-HHhhhcCCCCcEEEccCCCCChhhhh-hccC
Q 009672 387 TDTGLAALTSLTGLTHLDLFGARI--------------------TDSG-AAYLRNFKNLRSLEICGGGLTDAGVK-HIKD 444 (529)
Q Consensus 387 ~~~~~~~l~~~~~L~~L~l~~~~l--------------------~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~ 444 (529)
... ..+++|+.+++++|++ +... ...+..+++|+.|++++|.++..... .+..
T Consensus 375 ~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 375 TTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp CCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred Ccc-----cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 432 1133333333333322 2211 22345678888888888877754332 3445
Q ss_pred CCCCCeEecCCCCCCCh-----hHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCC
Q 009672 445 LSSLTLLNLSQNCNLTD-----KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 519 (529)
Q Consensus 445 ~~~L~~L~l~~~~~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 519 (529)
+++|++|++++| .++. ..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|+++......+.
T Consensus 450 ~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--- 525 (844)
T 3j0a_A 450 NPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--- 525 (844)
T ss_dssp CTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC---
T ss_pred CCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh---
Confidence 678888888888 5542 2234567789999999999999988888889999999999999998864333222
Q ss_pred CCCceecC
Q 009672 520 LPNLVSFR 527 (529)
Q Consensus 520 ~~~l~~l~ 527 (529)
++|+.|+
T Consensus 526 -~~L~~L~ 532 (844)
T 3j0a_A 526 -ANLEILD 532 (844)
T ss_dssp -SCCCEEE
T ss_pred -ccccEEE
Confidence 4555543
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-37 Score=317.14 Aligned_cols=426 Identities=20% Similarity=0.160 Sum_probs=280.7
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEe
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 137 (529)
...+.+.+++.++.. +..+ .++|++|++++| .+....+..|..+++|++|++++|. ++...+..|.++++|++|+
T Consensus 6 ~~~~c~~~~~~l~~i-p~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 6 ASGVCDGRSRSFTSI-PSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp TTSEEECTTSCCSSC-CSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCceEECCCCccccc-cccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEE
Confidence 344467777777743 3333 379999999998 5888778889999999999999998 6777778899999999999
Q ss_pred ccCccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCC-CChhHHHHhhccCccchhhhhhhh
Q 009672 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
+++|......+..++.+++|++|++++|. +.. ..+..+..+++|++|++++|. +.......+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--------------- 144 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF--------------- 144 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT---------------
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhh---------------
Confidence 99986555555668999999999999954 443 345678899999999999987 443322333
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH-
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC- 294 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~- 294 (529)
..+++|++|++++|.+.+..+..+..+++|+.|+++.+.+.......+..+++|++|++++|.+.+..
T Consensus 145 -----------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (549)
T 2z81_A 145 -----------AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213 (549)
T ss_dssp -----------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCC
T ss_pred -----------hcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccc
Confidence 44499999999999998877888899999999999999887655444567899999999999887531
Q ss_pred --HHhhcCCCCCCEEECCCCCCChhhhhh----hcCCCCCCeEEcCCCc-------------------------------
Q 009672 295 --LVHLKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQ------------------------------- 337 (529)
Q Consensus 295 --~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~------------------------------- 337 (529)
......+++|+.|++.++.+....... +..+++|+.+++.+|.
T Consensus 214 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 112345789999999988665433322 2233444444444433
Q ss_pred ----------------------------cChhhhhhccCCCCCCeEeccCCCCChhhh---hhhcCCCCCcEEECCCCCC
Q 009672 338 ----------------------------VGSSGLRHLSGLTNLESINLSFTGISDGSL---RKLAGLSSLKSLNLDARQI 386 (529)
Q Consensus 338 ----------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~ 386 (529)
+.......+..+++|+.|++++|.+.+..+ ..++.+++|+.|++++|.+
T Consensus 294 ~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 373 (549)
T 2z81_A 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373 (549)
T ss_dssp SCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC
T ss_pred chhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc
Confidence 222211222334455555555555444322 1233444555555555555
Q ss_pred CHHHH--HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHH
Q 009672 387 TDTGL--AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464 (529)
Q Consensus 387 ~~~~~--~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 464 (529)
+.... ..+..+++|+.|++++|+++.. +..+..+++|++|++++|.++.... .+ .++|++|++++| .++..
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N-~l~~~-- 446 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNN-NLDSF-- 446 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSS-CCSCC--
T ss_pred cccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCC-Chhhh--
Confidence 44321 2344455555555555544432 2233444555555555555443211 11 135666666666 45543
Q ss_pred HHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 465 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
...+++|+.|++++|.+..... ...+++|+.|++++|+++......+. .+++|+.|++
T Consensus 447 --~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l 504 (549)
T 2z81_A 447 --SLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFD--RLTSLQKIWL 504 (549)
T ss_dssp --CCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGG--GCTTCCEEEC
T ss_pred --cccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHh--cCcccCEEEe
Confidence 2467888888888888875332 34678899999999988876555455 6778877765
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.9e-38 Score=316.04 Aligned_cols=421 Identities=18% Similarity=0.144 Sum_probs=315.3
Q ss_pred eEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEecc
Q 009672 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (529)
Q Consensus 60 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (529)
++++++++.++. .+..+. ++|++|++++| .+....+..|..+++|++|++++|. ++...|..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecC
Confidence 689999999984 444343 89999999998 6888777899999999999999998 677778899999999999999
Q ss_pred CccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHH
Q 009672 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218 (529)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 218 (529)
+|... ..+.. .+++|++|++++|. +.. ..+..++.+++|++|++++|.++... +..+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l--------------- 135 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKSS---VLPI--------------- 135 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCGGG---GGGG---------------
T ss_pred CCcee-ecCcc--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccchhh---cccc---------------
Confidence 98543 33333 88999999999954 554 45678999999999999999988633 2222
Q ss_pred hhhhhhhhcccCCc--cEEEccCCCC--CHHHHHHhh--------------------------cCCCCCeEecCCCc---
Q 009672 219 LFCLHVFLTSLQKL--TLLNLEGCPV--TAACLDSLS--------------------------ALGSLFYLNLNRCQ--- 265 (529)
Q Consensus 219 ~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~--------------------------~~~~L~~L~l~~~~--- 265 (529)
++| +.|++++|.+ ....+..+. .+++|+.+++++|.
T Consensus 136 -----------~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 136 -----------AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp -----------TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred -----------ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence 555 7777777665 333333333 35667777776664
Q ss_pred ----CChhhhHhhhcCCCccEEEccCCCCChHHHHhhc---CCCCCCEEECCCCCCChhhhhhh-----cCCCCCCeEEc
Q 009672 266 ----LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCLEL 333 (529)
Q Consensus 266 ----~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l 333 (529)
+.+.. ..+..+++|+.|+++++.+.+..+..+. ..++|++|++++|.+....+..+ ..+++|+.+++
T Consensus 205 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l 283 (520)
T 2z7x_B 205 KCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283 (520)
T ss_dssp TTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEE
T ss_pred ccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccc
Confidence 33322 3566777888888877776654332221 24688888888876654445555 66778888888
Q ss_pred CCCccChhhhhhccC---CCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCC
Q 009672 334 SDTQVGSSGLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 410 (529)
+++.+ ......+.. ..+|+.|++++|.+.... ....+++|++|++++|.+.+..+..++.+++|+.|++++|++
T Consensus 284 ~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 360 (520)
T 2z7x_B 284 VSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360 (520)
T ss_dssp EECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred cccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence 87766 221122222 257899999998876532 125789999999999999986677788999999999999999
Q ss_pred ChH--HHHhhhcCCCCcEEEccCCCCCh-hhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhH
Q 009672 411 TDS--GAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 487 (529)
Q Consensus 411 ~~~--~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (529)
++. .+..+..+++|++|++++|.+.+ .....+..+++|++|++++| .++...+..+. ++|+.|++++|.+...
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~~i- 436 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIKSI- 436 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCCCC-
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccccc-
Confidence 974 45678999999999999999988 44445788899999999999 78776554432 7999999999999854
Q ss_pred HHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 488 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 488 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
+..+..+++|++|++++|+++..+...+. .+++|+.|++
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~l 475 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLKSVPDGIFD--RLTSLQKIWL 475 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEEC
T ss_pred chhhhcCCCCCEEECCCCcCCccCHHHhc--cCCcccEEEC
Confidence 44556899999999999999865443343 6788888765
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.5e-39 Score=335.00 Aligned_cols=422 Identities=17% Similarity=0.157 Sum_probs=326.3
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEec-cCCcccCchhhhh---------------------------------
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEH--------------------------------- 101 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~--------------------------------- 101 (529)
..+++.|+|+++.+++..++.++++++|+.|+| ++| .+.+..+..
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 367999999999999999999999999999999 554 332220000
Q ss_pred -------c-----------cCCCCCCEEEcCC--CCccchhHHHHHhCCCCCCEEeccCcccccc---------------
Q 009672 102 -------L-----------RGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHG--------------- 146 (529)
Q Consensus 102 -------~-----------~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------- 146 (529)
+ .....++.+.+.. |. +++ +|..+.++++|++|++++|.....
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-ITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCc-ccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 0 1112333333333 33 444 788899999999999999864331
Q ss_pred --cccccc--CCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCC-CCh-hHHHHhhccCccchhhhhhhhHHHhh
Q 009672 147 --GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGLSISSVIFILCSMIIRLF 220 (529)
Q Consensus 147 --~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 220 (529)
.+..++ ++++|+.|++++|. +.+..+..+.++++|+.|++++|. ++. ..+..+..+
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L----------------- 540 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL----------------- 540 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCT-TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHH-----------------
T ss_pred ccCChhhhhccCCCCCEEECcCCC-CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhh-----------------
Confidence 566666 99999999999854 555677889999999999999998 887 555555433
Q ss_pred hhhhhhcccCCccEEEccCCCCCHHHHH--HhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhh
Q 009672 221 CLHVFLTSLQKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 298 (529)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 298 (529)
...+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..|..+
T Consensus 541 --~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l 614 (876)
T 4ecn_A 541 --ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDF 614 (876)
T ss_dssp --HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTS
T ss_pred --hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHH
Confidence 112345579999999999998 4555 7899999999999999998 444 7888999999999999998 567678
Q ss_pred cCCCC-CCEEECCCCCCChhhhhhhcCCC--CCCeEEcCCCccChhhhhh---cc--CCCCCCeEeccCCCCChhhhhhh
Q 009672 299 KGLTN-LESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQVGSSGLRH---LS--GLTNLESINLSFTGISDGSLRKL 370 (529)
Q Consensus 299 ~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~l 370 (529)
..+++ |+.|++++|.+.. .+..+...+ +|+.|++++|.+....+.. +. .+++|+.|++++|.+.......+
T Consensus 615 ~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~ 693 (876)
T 4ecn_A 615 CAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693 (876)
T ss_dssp CEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH
T ss_pred hhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH
Confidence 88888 9999999998874 445555544 4999999999987654321 12 34589999999999997666666
Q ss_pred cCCCCCcEEECCCCCCCHHHHHHHh-------cCCCCCEEecCCCCCChHHHHhhh--cCCCCcEEEccCCCCChhhhhh
Q 009672 371 AGLSSLKSLNLDARQITDTGLAALT-------SLTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~ 441 (529)
..+++|+.|++++|.+...+...+. ++++|+.|++++|.++.. +..+. .+++|+.|++++|.+++. +..
T Consensus 694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~l-p~~ 771 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSSF-PTQ 771 (876)
T ss_dssp HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSSC-CCG
T ss_pred ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCcc-chh
Confidence 6889999999999999855333332 233899999999999965 44554 899999999999999884 667
Q ss_pred ccCCCCCCeEecCCCC-----CCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 442 IKDLSSLTLLNLSQNC-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 442 ~~~~~~L~~L~l~~~~-----~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+..+++|+.|++++|+ .+....|..+..+++|+.|++++|.+.. .+..+ .++|+.|++++|++...
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l--~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISI 842 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC--CSSSCEEECCSCTTCEE
T ss_pred hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhh--cCCCCEEECCCCCCCcc
Confidence 8889999999997732 5666778889999999999999999954 44444 37999999999988654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.6e-37 Score=316.73 Aligned_cols=408 Identities=16% Similarity=0.178 Sum_probs=322.6
Q ss_pred CCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCcc-----ch------hHHH------------------------
Q 009672 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI-----TA------QGMK------------------------ 125 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~------~~~~------------------------ 125 (529)
.+++.|+|+++ .+.+..+..++++++|++|+|++|... .+ ..|.
T Consensus 81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 48999999998 688777899999999999999998530 00 0000
Q ss_pred -----HH-----------hCCCCCCEEeccC-ccccccccccccCCCcCcEEeccCCcccCcc-----------------
Q 009672 126 -----AF-----------AGLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITDS----------------- 171 (529)
Q Consensus 126 -----~~-----------~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------- 171 (529)
.+ .....++.+.+.. ++.+.+.+..++++++|++|++++|. +.+.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence 00 0111222333322 23455566789999999999999954 7664
Q ss_pred cccccc--CCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCC-CCH-HHH
Q 009672 172 DMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA-ACL 247 (529)
Q Consensus 172 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~ 247 (529)
.|..++ ++++|++|++++|.+....+..+ .++++|++|++++|. +.+ ..|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l--------------------------~~l~~L~~L~Ls~n~~l~~~~lp 292 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL--------------------------KALPEMQLINVACNRGISGEQLK 292 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--------------------------TTCSSCCEEECTTCTTSCHHHHH
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH--------------------------hcCCCCCEEECcCCCCCccccch
Confidence 778888 99999999999998876544444 445999999999998 887 778
Q ss_pred HHhhcC------CCCCeEecCCCcCChhhhH--hhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhh
Q 009672 248 DSLSAL------GSLFYLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 319 (529)
Q Consensus 248 ~~~~~~------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 319 (529)
..+..+ ++|+.|++++|.+. ..+. .+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+. ..+
T Consensus 293 ~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp 369 (636)
T 4eco_A 293 DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP 369 (636)
T ss_dssp HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC
T ss_pred HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-ccc
Confidence 777765 99999999999998 4555 78899999999999999986667 7888999999999999877 355
Q ss_pred hhhcCCCC-CCeEEcCCCccChhhhhhccCC--CCCCeEeccCCCCChhhhhhhc-------CCCCCcEEECCCCCCCHH
Q 009672 320 VNLTGLCN-LKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDT 389 (529)
Q Consensus 320 ~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~ 389 (529)
..+..+++ |+.|++++|.++ ..+..+... ++|+.|++++|.+....+..+. .+++|+.|++++|.+...
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp TTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred HhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence 66888898 999999999988 444455544 4899999999999887777776 678999999999999977
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcC-------CCCcEEEccCCCCChhhhhhcc--CCCCCCeEecCCCCCCC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNF-------KNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-------~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~~l~ 460 (529)
+...+..+++|+.|++++|.++..+...+... ++|++|++++|.++.. +..+. .+++|++|++++| .++
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~ 526 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYN-SFS 526 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSS-CCS
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCC-CCC
Confidence 66667789999999999999996655444433 3999999999999954 55565 8999999999999 788
Q ss_pred hhHHHHHhCCCCCCeeec------cCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 461 DKTLELISGLTGLVSLNV------SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 461 ~~~~~~l~~l~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
. +|..+..+++|+.|++ ++|.+.+..+..+..+++|++|++++|+++.. +....++|+.|++
T Consensus 527 ~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-----p~~~~~~L~~L~L 594 (636)
T 4eco_A 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-----NEKITPNISVLDI 594 (636)
T ss_dssp S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-----CSCCCTTCCEEEC
T ss_pred C-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc-----CHhHhCcCCEEEC
Confidence 7 6778889999999999 45777777788889999999999999999543 2223477877764
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-36 Score=317.36 Aligned_cols=406 Identities=15% Similarity=0.144 Sum_probs=314.4
Q ss_pred CCCCeEeccCCcccCchhhhhccCCCCCCEEEc-CCCCccchh-------------------------------------
Q 009672 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQ------------------------------------- 122 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~------------------------------------- 122 (529)
.++..|+|+++ .+.+..+..|+++++|++|+| ++|. +++.
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccC-CCCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 57999999998 688888899999999999999 6554 2222
Q ss_pred ---HHHHHhC-----------CCCCCEEeccC-ccccccccccccCCCcCcEEeccCCcccCc-----------------
Q 009672 123 ---GMKAFAG-----------LINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITD----------------- 170 (529)
Q Consensus 123 ---~~~~~~~-----------~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------- 170 (529)
.+..+.. ...++.+.+.. ++.+.+.+..++++++|+.|++++| .+.+
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccc
Confidence 1111111 11233333332 1234446678999999999999995 4665
Q ss_pred ccccccc--CCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCC-CCH-HH
Q 009672 171 SDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCP-VTA-AC 246 (529)
Q Consensus 171 ~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~ 246 (529)
..|..++ ++++|+.|++++|.+....+..+.. +++|+.|++++|. +.. ..
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~--------------------------L~~L~~L~Ls~N~~lsg~~i 533 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD--------------------------LPELQSLNIACNRGISAAQL 533 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG--------------------------CSSCCEEECTTCTTSCHHHH
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhC--------------------------CCCCCEEECcCCCCcccccc
Confidence 2677777 9999999999999877655544444 4999999999998 887 67
Q ss_pred HHHhhcC-------CCCCeEecCCCcCChhhhH--hhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChh
Q 009672 247 LDSLSAL-------GSLFYLNLNRCQLSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 317 (529)
Q Consensus 247 ~~~~~~~-------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 317 (529)
|..+..+ ++|+.|++++|.+. ..|. .+..+++|+.|++++|.+. ..| .+..+++|+.|++++|.+. .
T Consensus 534 P~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~ 609 (876)
T 4ecn_A 534 KADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-E 609 (876)
T ss_dssp HHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-C
T ss_pred hHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-c
Confidence 7766655 49999999999998 4555 7889999999999999998 555 7889999999999999888 4
Q ss_pred hhhhhcCCCC-CCeEEcCCCccChhhhhhccCCC--CCCeEeccCCCCChhhhh---hhc--CCCCCcEEECCCCCCCHH
Q 009672 318 GLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLSSLKSLNLDARQITDT 389 (529)
Q Consensus 318 ~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~~~~~ 389 (529)
.+..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+....+. .+. .+++|+.|++++|.+...
T Consensus 610 lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l 688 (876)
T 4ecn_A 610 IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688 (876)
T ss_dssp CCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC
T ss_pred chHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc
Confidence 5666888888 999999999988 3445555544 499999999988764331 122 345899999999999977
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhc-------CCCCcEEEccCCCCChhhhhhcc--CCCCCCeEecCCCCCCC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRN-------FKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-------~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~~l~ 460 (529)
+...+..+++|+.|++++|.+...+...+.. +++|+.|++++|.++.. +..+. .+++|+.|++++| .++
T Consensus 689 p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~ 766 (876)
T 4ecn_A 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYN-CFS 766 (876)
T ss_dssp CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSS-CCS
T ss_pred CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCC-CCC
Confidence 6666678999999999999998655444432 34999999999999854 55665 8999999999999 787
Q ss_pred hhHHHHHhCCCCCCeeeccC------CccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 461 DKTLELISGLTGLVSLNVSN------SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 461 ~~~~~~l~~l~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
. +|..+..+++|+.|++++ |.+.+..+..+..+++|+.|++++|+++. ++....++|+.|++
T Consensus 767 ~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-----Ip~~l~~~L~~LdL 834 (876)
T 4ecn_A 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-----VDEKLTPQLYILDI 834 (876)
T ss_dssp S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-----CCSCCCSSSCEEEC
T ss_pred c-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-----cCHhhcCCCCEEEC
Confidence 7 577788999999999976 77777777889999999999999999953 23223467777754
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-36 Score=308.89 Aligned_cols=440 Identities=15% Similarity=0.118 Sum_probs=317.6
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|++++|.+++..+..|+.+++|++|++++| .++...+..|..+++|++|++++|. ++ .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQ-NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CC-EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CC-ccCcc--ccccCCE
Confidence 377999999999998877788899999999999987 6887777888889999999999988 44 34444 7889999
Q ss_pred EeccCccccccc-cccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCC--ChhHHHHhhccCccchhhhh
Q 009672 136 LDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV--TDSGIAYLKGLSISSVIFIL 212 (529)
Q Consensus 136 L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~~~~~~~~ 212 (529)
|++++|...... +..++.+++|++|++++ +.+.......+.++ +|++|++++|.+ +...+..+..+......+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCC-CccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999988644423 36788889999999988 44554333333333 449999988877 54444444433211100000
Q ss_pred hhhHHHhhhhhhhhcccCCccEEEccCCCCC----HHHHHHhhcCCCCCeEecCCCcCChhhhHhh---hcCCCccEEEc
Q 009672 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNL 285 (529)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l 285 (529)
.............+..+++|+.++++++... ......+...++|+.+++.++.+.......+ ...++|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 0000000011123446688999999987522 1223467788999999998887765433222 23458999999
Q ss_pred cCCCCChHHHHhh-----cCCCCCCEEECCCCCCChhhhhh---hcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 286 GFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVN---LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 286 ~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
++|.+.+..|..+ ..++.|+.+++..+.+ ...... +....+|+.|++++|.+.... ....+++|+.|++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred eccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 9998876566554 4455555555555544 111111 222368999999999875432 1267889999999
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHH--HHHHHhcCCCCCEEecCCCCCCh-HHHHhhhcCCCCcEEEccCCCC
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGL 434 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~l 434 (529)
++|.+.+..+..+..+++|+.|++++|.++.. .+..++.+++|+.|++++|.++. .+...+..+++|++|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 99999987788889999999999999999863 24557899999999999999987 5555678899999999999999
Q ss_pred ChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 435 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
++..+..+. ++|++|++++| .++. +|..+..+++|+.|++++|.++......+..+++|+.|++++|++++
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNN-RIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSS-CCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Ccchhhhhc--CcCCEEECCCC-cCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 876555443 79999999999 7885 44555589999999999999997655558899999999999999875
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.5e-35 Score=291.63 Aligned_cols=363 Identities=18% Similarity=0.205 Sum_probs=241.5
Q ss_pred CCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCcccc-ccccccccCCCcCcEEeccCCcccCccccccccCCCCCCe
Q 009672 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (529)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 184 (529)
++|++|++++|. ++...+..|.++++|++|++++|... ...+..+..+++|++|++++ +.+....+..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT-CTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC-CccCccChhhccCcccCCE
Confidence 689999999998 56777888999999999999998643 22346788899999999998 4566666788899999999
Q ss_pred EEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHH-hhcCCCCCeEecCC
Q 009672 185 LQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNR 263 (529)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~ 263 (529)
|++++|.+++..+.. ..+..+++|++|++++|.+....+.. +..+++|++|++++
T Consensus 108 L~L~~n~l~~~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 108 LTLTQCNLDGAVLSG------------------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp EECTTSCCBTHHHHS------------------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred EeCCCCCCCccccCc------------------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 999999887643332 01334489999999999887765544 77889999999999
Q ss_pred CcCChhhhHhhhcC--CCccEEEccCCCCChHHHHh--------hcCCCCCCEEECCCCCCChhhhhhhcC---CCCCCe
Q 009672 264 CQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVH--------LKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKC 330 (529)
Q Consensus 264 ~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~ 330 (529)
|.+....+..+..+ .+|+.++++++.+....+.. +..+++|+.|++++|.+....+..+.. .++|+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 98887766666554 68889998888776432221 234578888888888777666555543 377888
Q ss_pred EEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhc--CCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
|+++++........ .+.+.......+. ..++|+.|++++|.+....+..++.+++|+.|++++|
T Consensus 244 L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 244 LILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp EECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred Eeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 88877654322100 0001100011111 1245666666666665554455556666666666666
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (529)
.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++| .++...+..+..+++|+.|++++|.+.+..+
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCH
Confidence 666655555566666666666666666555555666666666666666 5555555556666666666666666665554
Q ss_pred HhccCCCCCcEEeecCccCCh
Q 009672 489 RHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 489 ~~~~~~~~L~~L~l~~~~~~~ 509 (529)
..+..+++|++|++++|+++.
T Consensus 389 ~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCcccEEEccCCCccc
Confidence 555666666666666665543
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.4e-35 Score=291.04 Aligned_cols=373 Identities=20% Similarity=0.178 Sum_probs=213.4
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
.+++++|+|+++.+++..+..|+++++|++|++++|.......+..|..+++|++|++++|. ++...|..|.++++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence 36788888888888877777788888888888888743234445677888888888888887 55666777888888888
Q ss_pred EeccCccccccccc--cccCCCcCcEEeccCCcccCcccccc-ccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhh
Q 009672 136 LDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFIL 212 (529)
Q Consensus 136 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (529)
|++++|......+. .+..+++|++|++++| .+.+..+.. +..+++|++|++++|.++......+..+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--------- 177 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF--------- 177 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG---------
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc---------
Confidence 88888754332232 3677788888888774 455444443 6677788888887777765443333222
Q ss_pred hhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCCh
Q 009672 213 CSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 292 (529)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 292 (529)
...+++.|+++++.+....+..+. ......+..+++|++|++++|.+.+
T Consensus 178 ---------------~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 178 ---------------QGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp ---------------TTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred ---------------ccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccc
Confidence 014667777777665442211110 0000111223455555555555554
Q ss_pred HHHHhhcC---CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhcc--CCCCCCeEeccCCCCChhhh
Q 009672 293 ECLVHLKG---LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS--GLTNLESINLSFTGISDGSL 367 (529)
Q Consensus 293 ~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 367 (529)
..+..+.. .++++.|++.++....... ....++.+ ....+. ..++|+.+++++|.+....+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GHTNFKDP-------------DNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCT-TCCSSCCC-------------CTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred cchhhhhccccccceeeEeecccccccccc-chhhhccC-------------cccccccccccCceEEEecCccccccch
Confidence 44433322 2555555555553221100 00000000 000000 12455555555555555444
Q ss_pred hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCC
Q 009672 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447 (529)
Q Consensus 368 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 447 (529)
..++.+++|+.|++++|.+....+..++.+++|+.|++++|.++...+..+.++++|++|++++|.+++..+..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 45555555555555555555544445555566666666666665555555566666666666666666655555666666
Q ss_pred CCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 448 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 373 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 373 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 666666666 5555544555566666666666666554
No 24
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=8.8e-34 Score=282.88 Aligned_cols=400 Identities=25% Similarity=0.313 Sum_probs=245.1
Q ss_pred CCCCeEeccCCcccCchhhhh-ccCCCCCCEEEcCCCCccch----hHHHHHhCCCCCCEEeccCccccccccccc-cCC
Q 009672 81 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGL 154 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~ 154 (529)
++|+.|+++++ .+.+..... +..+++|++|++++|. ++. .++..+..+++|++|++++|......+..+ ..+
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 56788888876 466555444 6778888888888887 443 346667777888888888765433333222 222
Q ss_pred C----cCcEEeccCCcccCcc----ccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhh
Q 009672 155 M----KLESLNIKWCNCITDS----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226 (529)
Q Consensus 155 ~----~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (529)
+ +|++|++++|. +.+. .+..+..+++|++|++++|.+++.+...+... ..
T Consensus 81 ~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~---------------------l~ 138 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG---------------------LL 138 (461)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH---------------------HT
T ss_pred hhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH---------------------Hh
Confidence 2 46666666532 3321 23445555555666665555554443333211 01
Q ss_pred cccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhc-----CC
Q 009672 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK-----GL 301 (529)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~ 301 (529)
...++|++|++++|.+....... .+..+..+++|++|++++|.+.+..+..+. ..
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 198 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEP--------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHH--------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSC
T ss_pred cCCCcceEEECCCCCCCHHHHHH--------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCC
Confidence 11234555555555544422111 112223344455555554444333222221 24
Q ss_pred CCCCEEECCCCCCChhh----hhhhcCCCCCCeEEcCCCccChhhhh-----hccCCCCCCeEeccCCCCChhh----hh
Q 009672 302 TNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLR-----HLSGLTNLESINLSFTGISDGS----LR 368 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~----~~ 368 (529)
++|++|++++|.++... +..+..+++|+.|++++|.+++.... ....+++|+.|++++|.+++.. +.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 45566666555554422 33344556666666666665544322 1224677777777777777643 33
Q ss_pred hhcCCCCCcEEECCCCCCCHHHHHHHhc-----CCCCCEEecCCCCCChHH----HHhhhcCCCCcEEEccCCCCChhhh
Q 009672 369 KLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 369 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
.+..+++|++|++++|.+.+.++..+.. .++|+.|++++|.++... +..+..+++|++|++++|.+++.++
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 4556788888888888887665555542 268899999988888653 4556778999999999998888766
Q ss_pred hhccC-----CCCCCeEecCCCCCCCh----hHHHHHhCCCCCCeeeccCCccChhHHHhcc-----CCCCCcEEeecCc
Q 009672 440 KHIKD-----LSSLTLLNLSQNCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESC 505 (529)
Q Consensus 440 ~~~~~-----~~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~ 505 (529)
..+.. .++|++|++++| .+++ ..+..+..+++|+.|++++|++++.+...+. ...+|+.|++.++
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred HHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 65543 679999999999 7886 5677888899999999999999887664442 2456899999888
Q ss_pred cCChh---HHHHhhcCCCCCceec
Q 009672 506 KVTAN---DIKRLQSRDLPNLVSF 526 (529)
Q Consensus 506 ~~~~~---~~~~l~~~~~~~l~~l 526 (529)
.++.. .++.+. +..|+++.+
T Consensus 438 ~~~~~~~~~l~~l~-~~~p~l~i~ 460 (461)
T 1z7x_W 438 YWSEEMEDRLQALE-KDKPSLRVI 460 (461)
T ss_dssp CCCHHHHHHHHHHH-HHCTTSEEE
T ss_pred ccCHHHHHHHHHHh-ccCCCcEee
Confidence 77654 444455 567888754
No 25
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1e-32 Score=275.23 Aligned_cols=358 Identities=25% Similarity=0.334 Sum_probs=233.4
Q ss_pred CCceeEEEecCcccCchhhhh-ccCCCCCCeEeccCCcccCchh----hhhccCCCCCCEEEcCCCCccchhHHHHHh-C
Q 009672 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-G 129 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~ 129 (529)
++++++|+++++.+++..... +..+++|++|++++| .+...+ +..+..+++|++|++++|. +++..+..+. .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 467999999999998776655 688999999999998 476543 3456788999999999998 5665555444 4
Q ss_pred CC----CCCEEeccCccccccc----cccccCCCcCcEEeccCCcccCcccccccc-----CCCCCCeEEccCCCCChhH
Q 009672 130 LI----NLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG 196 (529)
Q Consensus 130 ~~----~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~ 196 (529)
++ +|++|++++|.....+ +..+..+++|++|++++|. +.+..+..+. ..++|++|++++|.+++..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 66 6999999998655433 4667889999999999854 6554444332 3568999999999998876
Q ss_pred HHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhh-----cCCCCCeEecCCCcCChhh-
Q 009672 197 IAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG- 270 (529)
Q Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~- 270 (529)
...+... +..+++|+.|++++|.+.+..+..+. ..++|+.|++++|.++...
T Consensus 159 ~~~l~~~----------------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 159 CEPLASV----------------------LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp HHHHHHH----------------------HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred HHHHHHH----------------------HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 5554332 55569999999999998776555443 2568999999999887643
Q ss_pred ---hHhhhcCCCccEEEccCCCCChHHHH-----hhcCCCCCCEEECCCCCCChhh----hhhhcCCCCCCeEEcCCCcc
Q 009672 271 ---CEKFSKIGSLKVLNLGFNEITDECLV-----HLKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQV 338 (529)
Q Consensus 271 ---~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~ 338 (529)
+..+..+++|++|++++|.+.+.... .+..+++|++|++++|.++... +..+..+++|+.|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 45556678888888888877654322 2234677777777777776543 33344566777777777766
Q ss_pred ChhhhhhccC-----CCCCCeEeccCCCCChhh----hhhhcCCCCCcEEECCCCCCCHHHHHHHhc-----CCCCCEEe
Q 009672 339 GSSGLRHLSG-----LTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLD 404 (529)
Q Consensus 339 ~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~ 404 (529)
++.....+.. .++|+.|++++|.++... +..+..+++|++|++++|.+.+.++..+.. .++|+.|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 5544333221 245666666666555432 222334455555555555555443333321 34555555
Q ss_pred cCCCCCCh----HHHHhhhcCCCCcEEEccCCCCChhh
Q 009672 405 LFGARITD----SGAAYLRNFKNLRSLEICGGGLTDAG 438 (529)
Q Consensus 405 l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~l~~~~ 438 (529)
+++|.+++ ..+..+..+++|++|++++|++++.+
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 55555553 22333344455555555555554443
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-34 Score=300.19 Aligned_cols=448 Identities=21% Similarity=0.202 Sum_probs=308.7
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+|++|.++...+.+|+.+++|++|+|++| .++...+..|+++++|++|+|++|. ++...+..|.++++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 467999999999999888889999999999999998 6888888899999999999999998 66666778999999999
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhcc---Cccc-----
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL---SISS----- 207 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~~----- 207 (529)
|++++|.........++.+++|++|++++|.......+..+..+++|++|++++|.++......+..+ ....
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 99999865544556789999999999999543333455778899999999999999887654444322 1000
Q ss_pred --hhh--hhh--------------hhHHHhhhhhhhhcccCCccEEEccCCC------CCH-------------------
Q 009672 208 --VIF--ILC--------------SMIIRLFCLHVFLTSLQKLTLLNLEGCP------VTA------------------- 244 (529)
Q Consensus 208 --~~~--~~~--------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~~------------------- 244 (529)
... ... ............+..+..++...+.... +..
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 000 000 0000001111122222333222211000 000
Q ss_pred --------HHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH-------------------HHh
Q 009672 245 --------ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-------------------LVH 297 (529)
Q Consensus 245 --------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------------------~~~ 297 (529)
.....+....+++.+.+.++.+... ..+.....++.|++.++.+.... +..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 0000111122333333333322211 11223334455554444332110 111
Q ss_pred hcCCCCCCEEECCCCCCChh--hhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChh-hhhhhcCCC
Q 009672 298 LKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLS 374 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~ 374 (529)
...+++|+.++++.+.+... .+..+....+|+.+++..+..... ...+..+++|+.+++..+..... ....+..+.
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccc
Confidence 23467777777777755432 233445567778887777654432 23355678888888887744332 234566788
Q ss_pred CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCC-hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEec
Q 009672 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 453 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 453 (529)
+++.++++.|.+....+..+..+++|+.|++++|... ...+..+..+++|++|++++|++++..+..|.++++|++|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 9999999999888776677778899999999999644 345667889999999999999999988889999999999999
Q ss_pred CCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCC-CCCcEEeecCccCCh
Q 009672 454 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTA 509 (529)
Q Consensus 454 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 509 (529)
++| .++...+..+..+++|+.|++++|.+.+..+..+..+ ++|++|++++|++++
T Consensus 526 s~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 526 SHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999 8998888889999999999999999999888888887 689999999999875
No 27
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=9.2e-33 Score=284.70 Aligned_cols=470 Identities=21% Similarity=0.244 Sum_probs=290.1
Q ss_pred CCcHHHHHHHHHHhhhcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCC
Q 009672 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (529)
Q Consensus 1 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~ 80 (529)
.||.|++..||.++....-. . .+ ..++..|...... ..+.+++.+.... .....+.++
T Consensus 8 ~LPdevL~~If~~L~~~~d~-----~---~~----------s~vck~W~~~~~~---~~~~l~~~~~~~~-~~~~~~~~~ 65 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDR-----N---SV----------SLVCKSWYEIERW---CRRKVFIGNCYAV-SPATVIRRF 65 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHH-----H---HH----------HTSCHHHHHHHHH---HCCEEEESSTTSS-CHHHHHHHC
T ss_pred hCCHHHHHHHHhhcCCchhH-----H---HH----------HHHHHHHHHhhhh---hceEEeecccccc-CHHHHHhhC
Confidence 37999999999987621100 0 00 1123444443111 1334444443221 122234556
Q ss_pred CCCCeEeccCCcccCchh--------------hhhccCCCCCCEEEcCCCCccchhHHHHHh-CCCCCCEEeccCccccc
Q 009672 81 SNLQSLDFNFCIQISDGG--------------LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIH 145 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~--------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 145 (529)
++|+.|++++|..+.+.. ......+++|++|++++|. +++..+..+. .+++|++|++++|..+.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 666666666654332211 1122456777777777776 5566665555 57777777777774333
Q ss_pred c-cc-ccccCCCcCcEEeccCCcccCccccccc----cCCCCCCeEEccCCC--CChhHHHHhhccCccchhhhhhhhHH
Q 009672 146 G-GL-VNLKGLMKLESLNIKWCNCITDSDMKPL----SGLTNLKSLQISCSK--VTDSGIAYLKGLSISSVIFILCSMII 217 (529)
Q Consensus 146 ~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ 217 (529)
. .. .....+++|++|++++|. +++.....+ ..+++|++|+++++. ++......+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l----------------- 206 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL----------------- 206 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH-----------------
T ss_pred HHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH-----------------
Confidence 2 12 223467777777777754 443332222 256788888887765 332222222
Q ss_pred HhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcC--Ch----hhhHhhhcCCCccEE-EccCCCC
Q 009672 218 RLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL--SD----DGCEKFSKIGSLKVL-NLGFNEI 290 (529)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~----~~~~~l~~~~~L~~L-~l~~~~~ 290 (529)
+..+++|+.|++++|......+..+..+++|+.|++..+.. .. ..+..+..+++|+.+ .+.....
T Consensus 207 --------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 207 --------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp --------HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred --------HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch
Confidence 23347888888887744344566667778888888665431 11 122355677788887 3333221
Q ss_pred ChHHHHhhcCCCCCCEEECCCCCCChhhhhh-hcCCCCCCeEEcCCCccChhhhhhc-cCCCCCCeEecc---------C
Q 009672 291 TDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---------F 359 (529)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~---------~ 359 (529)
...+..+..+++|++|++++|.+....... +..+++|+.|++.+| +++.....+ ..+++|+.|++. .
T Consensus 279 -~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 279 -AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp -GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred -hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 223333445778888888888766543332 456788888888877 443333323 347888888873 3
Q ss_pred CCCChhhhhhhc-CCCCCcEEECCCCCCCHHHHHHHh-cCCCCCEEecC--C----CCCC----h-HHHHhhhcCCCCcE
Q 009672 360 TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF--G----ARIT----D-SGAAYLRNFKNLRS 426 (529)
Q Consensus 360 ~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~l~----~-~~~~~~~~~~~L~~ 426 (529)
+.+++.....+. .+++|+.|.+.++.+++.....+. .+++|+.|++. + +.++ + .....+.++++|++
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 456665555554 478888888888888887666665 58889988888 3 4555 2 22334577889999
Q ss_pred EEccCCCCChhhhhhccC-CCCCCeEecCCCCCCChhHHHHH-hCCCCCCeeeccCCccChhHHH-hccCCCCCcEEeec
Q 009672 427 LEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITSAGLR-HLKPLKNLRSLTLE 503 (529)
Q Consensus 427 L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~ 503 (529)
|++++ .+++.++..+.. +++|++|++++| .+++..+..+ ..+++|+.|++++|++++.+.. .+..+++|++|+++
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 99977 777777776665 788999999888 6777666655 5688999999999988766664 34557889999999
Q ss_pred CccCChhHHHHhhcCCCCCce
Q 009672 504 SCKVTANDIKRLQSRDLPNLV 524 (529)
Q Consensus 504 ~~~~~~~~~~~l~~~~~~~l~ 524 (529)
+|+++..+++.+. ..+|+++
T Consensus 515 ~~~~~~~~~~~l~-~~lp~l~ 534 (594)
T 2p1m_B 515 SCSVSFGACKLLG-QKMPKLN 534 (594)
T ss_dssp SSCCBHHHHHHHH-HHCTTEE
T ss_pred CCCCCHHHHHHHH-HhCCCCE
Confidence 9988888888775 5677774
No 28
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.1e-33 Score=289.29 Aligned_cols=472 Identities=18% Similarity=0.188 Sum_probs=332.3
Q ss_pred CcHHHHHHHHHHhh-hcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCC
Q 009672 2 LPRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (529)
Q Consensus 2 l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~ 80 (529)
||.|++..|+.++. .+. ... +..++..|........ +.+.+.+. ........+.++
T Consensus 16 LPdeil~~I~~~L~~~~d---------~~~----------~s~vck~W~~~~~~~~---~~l~~~~~-~~~~~~~~~~~~ 72 (592)
T 3ogk_B 16 TVDDVIEQVMTYITDPKD---------RDS----------ASLVCRRWFKIDSETR---EHVTMALC-YTATPDRLSRRF 72 (592)
T ss_dssp CGGGTHHHHHTTCCCHHH---------HHH----------HTTSCHHHHHHHHHHC---CEEEESCG-GGSCHHHHHHHC
T ss_pred CCHHHHHHHHHhcCCHHH---------HHH----------HHHHhHHHHHhhhccc---cEEEEeec-cccChHHHHHhC
Confidence 79999999998872 110 001 1123556655543322 23333332 222333445677
Q ss_pred CCCCeEeccCCcccCch--------------hhhhccCCCCCCEEEcCCCCccchhHHHHHhC-CCC-CCEEeccCcccc
Q 009672 81 SNLQSLDFNFCIQISDG--------------GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG-LIN-LVKLDLERCTRI 144 (529)
Q Consensus 81 ~~L~~L~l~~~~~~~~~--------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~ 144 (529)
++|+.|++++|..+.+. .......+++|++|++++|. +++..+..+.. +++ |++|++++|...
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 88888888776433211 11122378999999999986 67777777765 445 999999988633
Q ss_pred cc-cc-ccccCCCcCcEEeccCCcccCccc----cccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHH
Q 009672 145 HG-GL-VNLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIR 218 (529)
Q Consensus 145 ~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 218 (529)
.. .. .....+++|++|++++|. +.+.. ...+..+++|++|+++++.++......+..+
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~--------------- 215 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI--------------- 215 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH---------------
T ss_pred CHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH---------------
Confidence 22 12 223578999999999864 33332 1234578999999999998874333333322
Q ss_pred hhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCC---hhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
+.++++|+.|++++|.+.. .+..+..+++|+.++++..... ......+..+++|+.++++++.. ...+
T Consensus 216 -------~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~ 286 (592)
T 3ogk_B 216 -------ARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMP 286 (592)
T ss_dssp -------HHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGG
T ss_pred -------HhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHH
Confidence 4556999999999998876 4577888999999999853322 11223455778999999987533 2456
Q ss_pred HhhcCCCCCCEEECCCCCCChhhh-hhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccC-----------CCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSF-----------TGI 362 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~-----------~~~ 362 (529)
..+..+++|++|++++|.+..... ..+..+++|+.|++. +.+.+... .....+++|+.|++++ +.+
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 667788999999999998765544 346789999999998 44544443 3346789999999993 567
Q ss_pred Chhhhhh-hcCCCCCcEEECCCCCCCHHHHHHHhc-CCCCCEEecC----CCCCChH-----HHHhhhcCCCCcEEEccC
Q 009672 363 SDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLF----GARITDS-----GAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 363 ~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~l~~~-----~~~~~~~~~~L~~L~l~~ 431 (529)
++..... ...+++|+.|++..+.+++..+..++. +++|+.|+++ .+.+++. ....+.++++|++|++++
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 6654444 346899999999889999887777775 9999999996 5567652 344567899999999976
Q ss_pred CC--CChhhhhhccC-CCCCCeEecCCCCCCChhH-HHHHhCCCCCCeeeccCCccChhHHHh-ccCCCCCcEEeecCcc
Q 009672 432 GG--LTDAGVKHIKD-LSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCK 506 (529)
Q Consensus 432 ~~--l~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 506 (529)
|. +++.....+.. +++|++|++++| .+++.. +..+.++++|+.|++++|++++..... +..+++|++|++++|+
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 43 77777776654 899999999999 788744 456678999999999999988765543 4678999999999999
Q ss_pred CChhHHHHhhcCCCCCcee
Q 009672 507 VTANDIKRLQSRDLPNLVS 525 (529)
Q Consensus 507 ~~~~~~~~l~~~~~~~l~~ 525 (529)
++..+++.+. +.+|.++.
T Consensus 525 it~~~~~~l~-~~~p~l~~ 542 (592)
T 3ogk_B 525 ASMTGQDLMQ-MARPYWNI 542 (592)
T ss_dssp CCTTCTTGGG-GCCTTEEE
T ss_pred CCHHHHHHHH-HhCCCcEE
Confidence 9999888887 77887764
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-34 Score=295.02 Aligned_cols=428 Identities=21% Similarity=0.162 Sum_probs=297.9
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.+...+++++++++++. .+..+ .++|++|++++| .+....+..|..+++|++|++++|. ++...|..|.++++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~--~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDL--PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTS--CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCCcc-CCCCC--CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCC
Confidence 45556999999999986 33333 389999999998 6888877899999999999999998 6777788899999999
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCc-cccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (529)
+|++++|... ..+.. .+++|++|++++| .+.. ..+..++++++|++|++++|.++... +..+
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l---------- 166 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPV---------- 166 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGG----------
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCc---hhhh----------
Confidence 9999998643 43333 7899999999995 4554 33578999999999999999987632 2222
Q ss_pred hhHHHhhhhhhhhcccCCc--cEEEccCCCC--CHHHHHHhhc--------------------------CCCCCeEecCC
Q 009672 214 SMIIRLFCLHVFLTSLQKL--TLLNLEGCPV--TAACLDSLSA--------------------------LGSLFYLNLNR 263 (529)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~--------------------------~~~L~~L~l~~ 263 (529)
++| +.|++++|.+ ....+..+.. +++|+.+++++
T Consensus 167 ----------------~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 167 ----------------AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230 (562)
T ss_dssp ----------------TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEEC
T ss_pred ----------------hhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccc
Confidence 444 8888887766 4333333332 34555555555
Q ss_pred CcCC----hhhhHhhhcCCCccEEEccCCCCChHHHHh---hcCCCCCCEEECCCCCCChhhhhhh-----cCCCCCCeE
Q 009672 264 CQLS----DDGCEKFSKIGSLKVLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCL 331 (529)
Q Consensus 264 ~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L 331 (529)
|... ......+...+.|+.+++.++.+.+..... ....++|++|++++|.+....+..+ ..++.|+.+
T Consensus 231 n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp CSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 4311 111233445566666666555544322111 1123467777777665543333333 333344444
Q ss_pred EcCCCccCh--hhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCC
Q 009672 332 ELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409 (529)
Q Consensus 332 ~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 409 (529)
++..+.+.- .....+-...+|+.+++++|.+.... ....+++|++|++++|.+.+..+..++.+++|+.|++++|+
T Consensus 311 ~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 444443310 11111112256899999988776432 12578899999999999998667778899999999999999
Q ss_pred CChH--HHHhhhcCCCCcEEEccCCCCCh-hhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChh
Q 009672 410 ITDS--GAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 410 l~~~--~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
++.. .+..+.++++|++|++++|.++. .....+..+++|++|++++| .++...+..+. ++|+.|++++|.+...
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIMSI 465 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCccc
Confidence 9974 35678899999999999999987 44445778899999999999 78765543332 6999999999999864
Q ss_pred HHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecCC
Q 009672 487 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 528 (529)
Q Consensus 487 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 528 (529)
.. .+..+++|++|++++|+++..+...+. .+++|+.+++
T Consensus 466 p~-~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~l 504 (562)
T 3a79_B 466 PK-DVTHLQALQELNVASNQLKSVPDGVFD--RLTSLQYIWL 504 (562)
T ss_dssp CT-TTTSSCCCSEEECCSSCCCCCCTTSTT--TCTTCCCEEC
T ss_pred Ch-hhcCCCCCCEEECCCCCCCCCCHHHHh--cCCCCCEEEe
Confidence 43 445899999999999999864433233 6788887765
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.5e-32 Score=269.35 Aligned_cols=344 Identities=28% Similarity=0.375 Sum_probs=188.6
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 136 (529)
+++++|+++++.++.. +.+..+++|++|++++| .+....+ +..+++|++|++++|. ++...+ +.++++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEE
Confidence 4577777777766532 23666777777777776 4554432 6777777777777776 333333 6667777777
Q ss_pred eccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhH
Q 009672 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMI 216 (529)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 216 (529)
++++|... ..+ .+..+++|++|++++|. +.+ ...+..+++|++|++.. .+.... .
T Consensus 118 ~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~~--~----------------- 172 (466)
T 1o6v_A 118 TLFNNQIT-DID-PLKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDLK--P----------------- 172 (466)
T ss_dssp ECCSSCCC-CCG-GGTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCCG--G-----------------
T ss_pred ECCCCCCC-CCh-HHcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCch--h-----------------
Confidence 77766322 221 25666666666666532 332 12355566666666642 222110 0
Q ss_pred HHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHH
Q 009672 217 IRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 296 (529)
Q Consensus 217 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 296 (529)
+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..
T Consensus 173 ---------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~-------------------- 219 (466)
T 1o6v_A 173 ---------LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGI-------------------- 219 (466)
T ss_dssp ---------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGG--------------------
T ss_pred ---------hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccc--------------------
Confidence 12235555555555554432 224444555555555554443322 333
Q ss_pred hhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCC
Q 009672 297 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 376 (529)
Q Consensus 297 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 376 (529)
+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+....+ +..+++|
T Consensus 220 ----l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 220 ----LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp ----CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ----cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 44444444444444332 233445555555555555443322 4455555555555555554332 4555666
Q ss_pred cEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
+.|++++|.+....+ ++.+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC
Confidence 666666666555322 5566666666666666665543 45666666666666666654 34556666666666666
Q ss_pred CCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 457 CNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
.+++..+ +..+++|+.|++++|++++
T Consensus 364 -~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 364 -QISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -CCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -ccCccch--hhcCCCCCEEeccCCcccC
Confidence 5555544 5666667777776666655
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-31 Score=263.84 Aligned_cols=342 Identities=31% Similarity=0.375 Sum_probs=260.4
Q ss_pred cceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEE
Q 009672 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112 (529)
Q Consensus 33 l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 112 (529)
++.+.+..+.-..- .. ...++++++|+++++.+++..+ ++.+++|+.|++++| .+....+ +..+++|++|+
T Consensus 48 l~~L~l~~~~i~~l---~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 48 VTTLQADRLGIKSI---DG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLT 118 (466)
T ss_dssp CCEEECCSSCCCCC---TT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred ccEEecCCCCCccC---cc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEE
Confidence 56666655431110 11 3457899999999999986654 899999999999998 5666543 89999999999
Q ss_pred cCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCC
Q 009672 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192 (529)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 192 (529)
+++|. ++...+ +.++++|++|++++|... . ...+..+++|++|++++ .+.. ...+..+++|++|++++|.+
T Consensus 119 L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~--~~~~--~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 119 LFNNQ-ITDIDP--LKNLTNLNRLELSSNTIS-D-ISALSGLTSLQQLSFGN--QVTD--LKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CCSSC-CCCCGG--GTTCTTCSEEEEEEEEEC-C-CGGGTTCTTCSEEEEEE--SCCC--CGGGTTCTTCCEEECCSSCC
T ss_pred CCCCC-CCCChH--HcCCCCCCEEECCCCccC-C-ChhhccCCcccEeecCC--cccC--chhhccCCCCCEEECcCCcC
Confidence 99998 454433 889999999999998533 2 34588999999999974 3332 23488999999999999988
Q ss_pred ChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhH
Q 009672 193 TDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 272 (529)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 272 (529)
++.. .+ ..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... .
T Consensus 190 ~~~~--~l--------------------------~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 190 SDIS--VL--------------------------AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp CCCG--GG--------------------------GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--G
T ss_pred CCCh--hh--------------------------ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--h
Confidence 7632 23 344999999999999887543 77899999999999998764 4
Q ss_pred hhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCC
Q 009672 273 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 352 (529)
Q Consensus 273 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 352 (529)
.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+....+ +..+++|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 57788999999999998876443 7788899999999887776443 6778888888888888766543 5677888
Q ss_pred CeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCC
Q 009672 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432 (529)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 432 (529)
+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..++.+++|+.|++++|++++..+ +..+++|+.|++++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 888888887776544 56777788888888777764 356677777777777777776655 667777777777777
Q ss_pred CCCh
Q 009672 433 GLTD 436 (529)
Q Consensus 433 ~l~~ 436 (529)
.++.
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 6655
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.1e-31 Score=251.93 Aligned_cols=307 Identities=27% Similarity=0.359 Sum_probs=231.3
Q ss_pred cCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCC
Q 009672 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQK 231 (529)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (529)
..+++|++|+++++. +.. .+.+..+++|++|++++|.+++... +..+ ++
T Consensus 41 ~~l~~L~~L~l~~~~-i~~--~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l--------------------------~~ 89 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNL--------------------------VK 89 (347)
T ss_dssp HHHTTCSEEECCSSC-CCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTC--------------------------TT
T ss_pred hhcccccEEEEeCCc-ccc--chhhhhcCCccEEEccCCccccchh--hhcC--------------------------Cc
Confidence 455677777776633 332 2346667777777777777665332 3333 77
Q ss_pred ccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCC
Q 009672 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311 (529)
Q Consensus 232 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (529)
|++|++++|.+... +.+..+++|++|++++|.+....+ +..+++|++|++++|...... ..+..+++|++|++.+
T Consensus 90 L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 90 LTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTE 164 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCS
T ss_pred CCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecC
Confidence 77777777776653 356777788888888877765433 667778888888877443322 2377788888888888
Q ss_pred CCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHH
Q 009672 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 391 (529)
|.+..... +..+++|+.|++++|.+..... +..+++|+.+++++|.+..... +..+++|++|++++|.+....+
T Consensus 165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp SCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence 87665433 6778888888888888766543 6778889999999888876544 7778899999999998887643
Q ss_pred HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 392 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++| .++...+..+..++
T Consensus 239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLT 311 (347)
T ss_dssp --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCT
T ss_pred --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccc
Confidence 77889999999999988875 3578899999999999998875 45778899999999999 88888889999999
Q ss_pred CCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 472 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 472 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
+|+.|++++|++++..+ +..+++|++|++++|++++
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence 99999999999988655 7789999999999998863
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.5e-32 Score=273.17 Aligned_cols=302 Identities=20% Similarity=0.233 Sum_probs=227.6
Q ss_pred CcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccE
Q 009672 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTL 234 (529)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 234 (529)
+.+++|++++ +.+....+..+..+++|++|++++|.++...+..+..+ ++|++
T Consensus 32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--------------------------~~L~~ 84 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL--------------------------FNLRT 84 (477)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC--------------------------TTCCE
T ss_pred CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC--------------------------ccCCE
Confidence 5788888888 55666666778888888888888888776554444444 88888
Q ss_pred EEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCC
Q 009672 235 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 314 (529)
Q Consensus 235 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (529)
|++++|.+....+..|.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++.+|.+
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 88888887766555677788888888888888776666777788888888888877766566677788888888888877
Q ss_pred ChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHH
Q 009672 315 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 394 (529)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 394 (529)
.......+..+++|+.|++++|.+.......+..+++|+.|++++|......+.......+|+.|++++|.+...+...+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 77666677778888888888887777666667777888888888775544333333344578888888887777666677
Q ss_pred hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCC
Q 009672 395 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 474 (529)
Q Consensus 395 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 474 (529)
..+++|+.|++++|.++...+..+..+++|++|++++|.+....+..+.++++|++|++++| .++...+..+..+++|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLE 323 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCC
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccC
Confidence 77788888888888777776666777788888888888877777777777788888888887 67766666667777888
Q ss_pred eeeccCCccC
Q 009672 475 SLNVSNSRIT 484 (529)
Q Consensus 475 ~L~l~~~~~~ 484 (529)
.|++++|++.
T Consensus 324 ~L~l~~N~l~ 333 (477)
T 2id5_A 324 TLILDSNPLA 333 (477)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcc
Confidence 8888887765
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.2e-31 Score=278.79 Aligned_cols=429 Identities=20% Similarity=0.219 Sum_probs=284.2
Q ss_pred EEEecCcccCchhhhhccCC-CCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEecc
Q 009672 61 SVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (529)
Q Consensus 61 ~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 139 (529)
+++-++.+++. .|. .+ +++++|+|++| .++...+..|.++++|++|+|++|. ++...+.+|.++++|++|+++
T Consensus 35 ~~~c~~~~l~~-vP~---~lp~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 35 TYQCMELNFYK-IPD---NLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp EEECTTSCCSS-CCS---SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECT
T ss_pred EEECCCCCcCc-cCC---CCCcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEcc
Confidence 45555555653 222 33 37999999998 6888888899999999999999998 666677789999999999999
Q ss_pred CccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhH-HHHhhccCccchhhhhhhhHHH
Q 009672 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-IAYLKGLSISSVIFILCSMIIR 218 (529)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~ 218 (529)
+|......+..|.++++|++|++++ +.+.......++++++|++|++++|.++... +..
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~------------------- 168 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY------------------- 168 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-------------------
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccCCCchh-------------------
Confidence 9865444556789999999999999 4577666677999999999999999887532 222
Q ss_pred hhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCC----CCCeEecCCCcCChhhh-----------------------
Q 009672 219 LFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRCQLSDDGC----------------------- 271 (529)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~----------------------- 271 (529)
+..+++|++|++++|.+....+..+..+. ....++++.+.+....+
T Consensus 169 -------~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~ 241 (635)
T 4g8a_A 169 -------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 241 (635)
T ss_dssp -------GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHH
T ss_pred -------hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccccccccc
Confidence 34448999999999988765554444332 23345555554433221
Q ss_pred -HhhhcCCCccEEEcc---------------------------------------------------------CCCCChH
Q 009672 272 -EKFSKIGSLKVLNLG---------------------------------------------------------FNEITDE 293 (529)
Q Consensus 272 -~~l~~~~~L~~L~l~---------------------------------------------------------~~~~~~~ 293 (529)
..+..+..++...+. .+.+..
T Consensus 242 ~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~- 320 (635)
T 4g8a_A 242 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER- 320 (635)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-
T ss_pred chhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-
Confidence 112222222222211 000000
Q ss_pred HHHhhcCCCCCCEEECCCCCCChhhh-------------------hhhcCCCCCCeEEcCCCccChh--hhhhccCCCCC
Q 009672 294 CLVHLKGLTNLESLNLDSCGIGDEGL-------------------VNLTGLCNLKCLELSDTQVGSS--GLRHLSGLTNL 352 (529)
Q Consensus 294 ~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L 352 (529)
...+.....++.|++.++.+..... .....+++|+.++++.|.+... .+.....+.++
T Consensus 321 -~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 321 -VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp -CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred -ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhh
Confidence 0011222334444443332211100 0011123334444433333211 11112233344
Q ss_pred CeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH-HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
+.+++..+..... ...+..+++|+.+++..+..... ....+..+++++.++++.|.+....+..+..+++|+.|++++
T Consensus 400 ~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~ 478 (635)
T 4g8a_A 400 KYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478 (635)
T ss_dssp CEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred hhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 4444444333221 12344566777777776544332 123456778899999999988887777888899999999999
Q ss_pred CCCC-hhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 432 GGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 432 ~~l~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
|.+. ...+..+..+++|++|++++| .++...+..|.++++|+.|+|++|.+.+..+..+..+++|+.|++++|+++..
T Consensus 479 N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 479 NSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred cccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 9754 345567888999999999999 89998889999999999999999999998888899999999999999999887
Q ss_pred HHHHhhcCCC-CCceecCC
Q 009672 511 DIKRLQSRDL-PNLVSFRP 528 (529)
Q Consensus 511 ~~~~l~~~~~-~~l~~l~~ 528 (529)
....+. .+ ++|+.|++
T Consensus 558 ~~~~l~--~l~~~L~~L~L 574 (635)
T 4g8a_A 558 KKQELQ--HFPSSLAFLNL 574 (635)
T ss_dssp CSSCTT--CCCTTCCEEEC
T ss_pred CHHHHH--hhhCcCCEEEe
Confidence 666565 44 57887765
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1e-29 Score=243.37 Aligned_cols=307 Identities=29% Similarity=0.345 Sum_probs=166.5
Q ss_pred ccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCC
Q 009672 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181 (529)
Q Consensus 102 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 181 (529)
+..+++|++|+++++.. ... + .+..+++|++|++++|... ..+. +..+++|++|++++| .+.+ .+.+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i-~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n-~i~~--~~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV-ASI-Q-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTN-KITD--ISALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCC-CCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCC--CGGGTTCTT
T ss_pred chhcccccEEEEeCCcc-ccc-h-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCC-cccC--chHHcCCCc
Confidence 44667888888888763 322 2 3667777777777776432 2222 666677777777764 3332 234666666
Q ss_pred CCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEec
Q 009672 182 LKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 261 (529)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 261 (529)
|++|++++|.+++... +.. +++|+.|++++|...... ..+..+++|++|++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~--------------------------l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LAN--------------------------LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTV 162 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTT--------------------------CTTCCEEECTTCTTCCCC-GGGTTCTTCCEEEC
T ss_pred CCEEECcCCcccCchh--hcc--------------------------CCceeEEECCCCCCcccc-cchhhCCCCcEEEe
Confidence 7777776666554322 222 266666666666332221 22455555666666
Q ss_pred CCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChh
Q 009672 262 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 341 (529)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 341 (529)
++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.+++.++ .+...
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n------------------------~l~~~ 214 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN------------------------QITDI 214 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSS------------------------CCCCC
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccC------------------------CCCCC
Confidence 5555543322 4445555555555554443211 344445555555444 44333
Q ss_pred hhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcC
Q 009672 342 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 421 (529)
Q Consensus 342 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 421 (529)
.. +..+++|+.|++++|.+..... +..+++|++|++++|.+... ..+..+++|+.|++++|.+++. ..+..+
T Consensus 215 ~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 215 TP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred ch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCC
Confidence 22 3444455555555554444322 44555555555555555442 2344555666666666655554 234556
Q ss_pred CCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 422 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
++|++|++++|.+++..+..+..+++|++|++++| .++...+ +..+++|+.|++++|+++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccccC--hhhhhccceeehhhhccc
Confidence 66666666666666665566666666666666666 4555444 556666666666666553
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=8.4e-31 Score=262.15 Aligned_cols=304 Identities=21% Similarity=0.201 Sum_probs=228.7
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+|++|.+++..+..|+.+++|++|+|++| .+....+..|.++++|++|++++|. ++...+..|.++++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCE
Confidence 456888888888888777777888888888888887 6777777788888888888888887 45555556778888888
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
|++++|......+..+..+++|++|++++ +.+....+..+..+++|++|++++|.++......+..+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l------------ 175 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL------------ 175 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC------------
T ss_pred EECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcccChhHhccc------------
Confidence 88888765555556777888888888887 45666666777888888888888887776555555444
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
++|+.|+++++.+....+..+..+++|+.|++++|......+.......+|++|++++|.+.....
T Consensus 176 --------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 176 --------------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp --------------TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred --------------CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 788888888887777655667778888888888876655444444445578888888887775555
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
..+..+++|+.|++++|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 56777888888888888777666666777788888888888777776677777788888888888777766666777777
Q ss_pred CcEEECCCCCCCH
Q 009672 376 LKSLNLDARQITD 388 (529)
Q Consensus 376 L~~L~l~~~~~~~ 388 (529)
|+.|++++|++..
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 8888888777754
No 37
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.7e-30 Score=267.52 Aligned_cols=417 Identities=18% Similarity=0.185 Sum_probs=308.1
Q ss_pred CeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccc--------------hhHHHHHhCCCCCCEEeccCccccccccc
Q 009672 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT--------------AQGMKAFAGLINLVKLDLERCTRIHGGLV 149 (529)
Q Consensus 84 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 149 (529)
+.+.+..+. .......+.++++|++|+++++..+. .........+++|++|++++|......+.
T Consensus 53 ~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~ 130 (592)
T 3ogk_B 53 EHVTMALCY--TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD 130 (592)
T ss_dssp CEEEESCGG--GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred cEEEEeecc--ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH
Confidence 345555442 22334566789999999998765322 12344455899999999999854444445
Q ss_pred cccC-CCc-CcEEeccCCcccCccccccc-cCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhh
Q 009672 150 NLKG-LMK-LESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFL 226 (529)
Q Consensus 150 ~~~~-~~~-L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (529)
.+.. ++. |++|++++|..+.......+ ..+++|++|++++|.+++.+...+..+ .
T Consensus 131 ~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~----------------------~ 188 (592)
T 3ogk_B 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL----------------------A 188 (592)
T ss_dssp HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH----------------------H
T ss_pred HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH----------------------H
Confidence 5544 445 99999999875544333333 378999999999998776543333222 3
Q ss_pred cccCCccEEEccCCCCC----HHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCC---hHHHHhhc
Q 009672 227 TSLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECLVHLK 299 (529)
Q Consensus 227 ~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~ 299 (529)
..+++|+.|+++++.+. ...+..+.++++|+.|++++|.+.. .+..+..+++|+.|+++..... ......+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 44599999999999886 4555667789999999999998876 4467788999999999853322 12233466
Q ss_pred CCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccCCCCChhhhhh-hcCCCCCc
Q 009672 300 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLK 377 (529)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~ 377 (529)
.+++|+.+.+.++... ..+..+..+++|++|++++|.++.... ..+..+++|+.|++. +.+.+..... ...+++|+
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 7899999999886333 345566778999999999999776654 446889999999999 4454444333 35789999
Q ss_pred EEECC-----------CCCCCHHHHHHH-hcCCCCCEEecCCCCCChHHHHhhhc-CCCCcEEEcc----CCCCChh---
Q 009672 378 SLNLD-----------ARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEIC----GGGLTDA--- 437 (529)
Q Consensus 378 ~L~l~-----------~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~----~~~l~~~--- 437 (529)
+|++. .+.++......+ ..+++|+.|++..+.+++.....+.. +++|++|+++ .+.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 99999 467777655554 47999999999888999887777754 9999999996 5567652
Q ss_pred --hhhhccCCCCCCeEecCCCC-CCChhHHHHHh-CCCCCCeeeccCCccChhHHH-hccCCCCCcEEeecCccCChhHH
Q 009672 438 --GVKHIKDLSSLTLLNLSQNC-NLTDKTLELIS-GLTGLVSLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDI 512 (529)
Q Consensus 438 --~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 512 (529)
....+.++++|++|+++.|. .+++..+..+. .+++|+.|++++|++++.... .+..+++|+.|++++|+++...+
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 23345678999999998653 37777766665 489999999999999886554 45789999999999999988878
Q ss_pred HHhhcCCCCCceecCC
Q 009672 513 KRLQSRDLPNLVSFRP 528 (529)
Q Consensus 513 ~~l~~~~~~~l~~l~~ 528 (529)
..+. ..+|+|+.|++
T Consensus 506 ~~~~-~~l~~L~~L~l 520 (592)
T 3ogk_B 506 AAAV-TKLPSLRYLWV 520 (592)
T ss_dssp HHHH-HHCSSCCEEEE
T ss_pred HHHH-HhcCccCeeEC
Confidence 7776 57899998754
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=8.7e-31 Score=254.84 Aligned_cols=268 Identities=20% Similarity=0.168 Sum_probs=182.0
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 55555555555555444444555555666666655555444334455566666666666655444444556666666666
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+... .+..+++|+.+++++|.+... ...++|+.|++++|.+..... ...++|+.|++++|.+...
T Consensus 173 ~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 173 SSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT 241 (390)
T ss_dssp CSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC
T ss_pred CCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc
Confidence 66655543 234556777777776665432 334567777777777765432 2346788888888888764
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++.. +..+..
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~ 316 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHV-ERNQPQ 316 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCCC-GGGHHH
T ss_pred --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-cceec-Cccccc
Confidence 4567888888888888888887777788888899999988888775 334566788999999998 67653 444667
Q ss_pred CCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+++|+.|++++|++.... +..+++|+.|++++|++++.....+.
T Consensus 317 l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred cCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHH
Confidence 888999999999887653 66788899999999998887766665
No 39
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=7.6e-29 Score=255.47 Aligned_cols=425 Identities=22% Similarity=0.230 Sum_probs=278.0
Q ss_pred HHHhcCCceeEEEecCcc-cCchh--------------hhhccCCCCCCeEeccCCcccCchhhhhcc-CCCCCCEEEcC
Q 009672 51 VIASQGSSLLSVDLSGSD-VTDSG--------------LIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFR 114 (529)
Q Consensus 51 ~~~~~~~~l~~l~l~~~~-~~~~~--------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~ 114 (529)
.....++++++|+++++. +++.. ......+++|+.|++++| .+.+..+..+. .+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCC
Confidence 445567888888888854 21111 111346788888888887 47766666664 68888888888
Q ss_pred CCCccchh-HHHHHhCCCCCCEEeccCccccccccccc----cCCCcCcEEeccCCc-ccCccccccc-cCCCCCCeEEc
Q 009672 115 RNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCN-CITDSDMKPL-SGLTNLKSLQI 187 (529)
Q Consensus 115 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~l-~~~~~L~~L~l 187 (529)
+|..++.. .+..+.++++|++|++++|.........+ ..+++|++|++++|. .+.......+ ..+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 88545544 44444578888888888876333333222 366788888888765 2332223332 35788899988
Q ss_pred cCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCC--C----HHHHHHhhcCCCCCeE-e
Q 009672 188 SCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPV--T----AACLDSLSALGSLFYL-N 260 (529)
Q Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~----~~~~~~~~~~~~L~~L-~ 260 (529)
+++......... +..+++|+.|+++.+.. . ...+..+.++++|+.+ .
T Consensus 219 ~~~~~~~~l~~~--------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~ 272 (594)
T 2p1m_B 219 NRAVPLEKLATL--------------------------LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272 (594)
T ss_dssp CTTSCHHHHHHH--------------------------HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCCcHHHHHHH--------------------------HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccC
Confidence 877321111222 34448888888766532 1 1233466778888888 4
Q ss_pred cCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHh-hcCCCCCCEEECCCCCCChhhhhhh-cCCCCCCeEEcCC---
Q 009672 261 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSD--- 335 (529)
Q Consensus 261 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~--- 335 (529)
+.+... ...+..+..+++|++|++++|.+.+..... +..+++|++|++.+| +.......+ ..+++|+.|++.+
T Consensus 273 ~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 273 FWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEP 350 (594)
T ss_dssp CBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCT
T ss_pred Ccccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcc
Confidence 443322 222333345778888888888776544333 567888888888877 333333333 3478888888832
Q ss_pred ------CccChhhhhhcc-CCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECC--C----CCCC----HHH-HHHHhc
Q 009672 336 ------TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD--A----RQIT----DTG-LAALTS 396 (529)
Q Consensus 336 ------~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~----~~~-~~~l~~ 396 (529)
+.+++.....+. .+++|+.|.+..+.+++.....+. .+++|+.|++. + +.++ +.. ...+..
T Consensus 351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 345555444443 478888888877888776666665 57888888887 3 4555 222 233567
Q ss_pred CCCCCEEecCCCCCChHHHHhhhc-CCCCcEEEccCCCCChhhhhhc-cCCCCCCeEecCCCCCCChhHHH-HHhCCCCC
Q 009672 397 LTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGL 473 (529)
Q Consensus 397 ~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L 473 (529)
+++|+.|++++ .+++.+...+.. +++|++|++++|.+++.+...+ ..+++|++|++++| .+++.... ....+++|
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETM 508 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCC
Confidence 88899999877 777766666654 8889999999888888777666 56888999999988 45665554 33458889
Q ss_pred CeeeccCCccChhHHHhc-cCCCCCcEEeecCcc
Q 009672 474 VSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCK 506 (529)
Q Consensus 474 ~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 506 (529)
+.|++++|+++..+...+ ..++.|+...+..+.
T Consensus 509 ~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 509 RSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 999999998877666655 567888776666553
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.7e-29 Score=249.17 Aligned_cols=344 Identities=20% Similarity=0.149 Sum_probs=215.0
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
++++++|+++++.+++. +.++.+++|++|++++| .++.. .++.+++|++|++++|. ++.. + +.++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~-l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNK-LTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSC-CSCC-C--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCC-Ccee-e--cCCCCcCCE
Confidence 46689999999888864 36888889999999887 46664 27788889999998887 4443 2 778888888
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
|++++|... .. .++.+++|++|++++| .+.+. .++.+++|++|++++|...... .
T Consensus 111 L~L~~N~l~-~l--~~~~l~~L~~L~l~~N-~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~---------------- 165 (457)
T 3bz5_A 111 LNCDTNKLT-KL--DVSQNPLLTYLNCARN-TLTEI---DVSHNTQLTELDCHLNKKITKL--D---------------- 165 (457)
T ss_dssp EECCSSCCS-CC--CCTTCTTCCEEECTTS-CCSCC---CCTTCTTCCEEECTTCSCCCCC--C----------------
T ss_pred EECCCCcCC-ee--cCCCCCcCCEEECCCC-cccee---ccccCCcCCEEECCCCCccccc--c----------------
Confidence 888887533 32 2778888888888874 45443 3677888888888887432211 1
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
+..+++|+.|++++|.+.... +..+++|+.|++++|.+... .+..+++|+.|++++|++.+ .+
T Consensus 166 ----------~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 166 ----------VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp ----------CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred ----------cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 233478888888888877632 66778888888888887764 35677888888888888876 33
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
+..+++|+.|++++|.+.... ...+++|+.|+++.+. |+.+++++|......+ +..+++
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~ 287 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRK 287 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTT
T ss_pred --ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--cccccc
Confidence 667788888888888776543 3445566666554432 3333344333222111 223444
Q ss_pred CcEEECCCCCCCHHHHH--------HHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCC
Q 009672 376 LKSLNLDARQITDTGLA--------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 447 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 447 (529)
|+.|++++|...+..+. .++.+++|+.|++++|++++. .+.++++|+.|++++|++++ ++.
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTT
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccc
Confidence 44444444432211000 012234566666666655553 25556666666666665553 234
Q ss_pred CCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHH
Q 009672 448 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489 (529)
Q Consensus 448 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (529)
|..|++++| .+... ..+..|..+++++|.+++..|.
T Consensus 357 L~~L~l~~n-~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 357 VGKIPALNN-NFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp GGGSSGGGT-SEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccccccCC-cEEec-----ceeeecCccccccCcEEEEcCh
Confidence 444555555 33332 2345566666777766655543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-29 Score=260.22 Aligned_cols=268 Identities=20% Similarity=0.164 Sum_probs=154.5
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+....+..|..+++|++|++++|.+...++..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 44444444444444333333444444444444444444333333444455555555555544433444455555555555
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+... .+..+++|+.|++++|.+... ...++|+.|++++|.+...... ..++|+.|++++|.+.+
T Consensus 179 ~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 179 SSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD- 246 (597)
T ss_dssp TTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC-
T ss_pred cCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC-
Confidence 55544432 133445556666655554332 2334566666666665543321 12467777777776665
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.++.. +..+..+++|++|++++| .++. +|..+..
T Consensus 247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~ 322 (597)
T 3oja_B 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQ 322 (597)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHH
T ss_pred -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCC-CCCc-cCccccc
Confidence 34566777777777777777776666677777777777777777664 334455677777777777 5654 3444566
Q ss_pred CCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhh
Q 009672 470 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 516 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 516 (529)
+++|+.|++++|.+.... +..+++|+.|++++|++++.....+-
T Consensus 323 l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHH
Confidence 777777777777776542 55667777777777777766554443
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=8.7e-29 Score=240.72 Aligned_cols=313 Identities=17% Similarity=0.109 Sum_probs=180.5
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
.+++++++++++.++......++.+++|++|++++| .+....+..|..+++|++|++++|. ++...+..|.++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCE
Confidence 366777777777777655555677777777777776 4666666677777777777777776 45555666677777777
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
|++++|.........+..+++|++|++++ +.+....+..+..+++|++|++++|.++... +
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~--------------- 182 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVD---L--------------- 182 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---G---------------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCccc---c---------------
Confidence 77777643322223356667777777776 3445444555666667777777666665431 1
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
..+++|+.|+++++.+.. +...++|+.|++++|.+.....
T Consensus 183 -----------~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~------------------------ 222 (390)
T 3o6n_A 183 -----------SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG------------------------ 222 (390)
T ss_dssp -----------GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC------------------------
T ss_pred -----------ccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc------------------------
Confidence 112566666666665543 1233455555555555443211
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
...++|+.|++.+|.+... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+... +..+..+++
T Consensus 223 ---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~ 296 (390)
T 3o6n_A 223 ---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPT 296 (390)
T ss_dssp ---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTT
T ss_pred ---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCC
Confidence 1123444444444444332 2344455555555555555444444455555555555555555442 222344566
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
|+.|++++|.+... +..+..+++|+.|++++|.++... +..+++|++|++++|++.....
T Consensus 297 L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 297 LKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH
Confidence 66666666666543 223445566777777766666542 4556677777777777665443
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.2e-29 Score=246.35 Aligned_cols=322 Identities=18% Similarity=0.196 Sum_probs=164.2
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.++++++|++++|.+++. .++.+++|++|++++| .+... .++.+++|++|++++|. ++.. + +..+++|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~L~L~~N~-l~~l-~--~~~l~~L~ 130 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYLNCDTNK-LTKL-D--VSQNPLLT 130 (457)
T ss_dssp GCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCEEECCSSC-CSCC-C--CTTCTTCC
T ss_pred ccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCEEECCCCc-CCee-c--CCCCCcCC
Confidence 456666666666666553 2566666666666665 34443 25566666666666665 3332 2 55666666
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCS 214 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 214 (529)
+|++++|.... . .++.+++|++|++++|..+... .+..+++|+.|++++|.++... +
T Consensus 131 ~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l-------------- 187 (457)
T 3bz5_A 131 YLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---V-------------- 187 (457)
T ss_dssp EEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---C--------------
T ss_pred EEECCCCccce-e--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---c--------------
Confidence 66666654222 1 2555666666666665444332 3555666666666666655421 2
Q ss_pred hHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH
Q 009672 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 294 (529)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 294 (529)
..+++|+.|++++|.+... .+..+++|+.|++++|.+.... +..+++|+.|++++|.+.+..
T Consensus 188 ------------~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 188 ------------SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp ------------TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC
T ss_pred ------------ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC
Confidence 2226666666666665553 2555666666666666665521 455566666666666665422
Q ss_pred HHhhcCCCCCCEEECCCCCCChhh--------hhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhh
Q 009672 295 LVHLKGLTNLESLNLDSCGIGDEG--------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 366 (529)
Q Consensus 295 ~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 366 (529)
+..+++|+.|++..+.+.... ...++.+++|+.|++++|......+ ...++|+.++
T Consensus 250 ---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~---------- 313 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD---CQAAGITELD---------- 313 (457)
T ss_dssp ---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCC----------
T ss_pred ---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec---cCCCcceEec----------
Confidence 334455555544433211100 0001222333333333332211111 0111222222
Q ss_pred hhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCC
Q 009672 367 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446 (529)
Q Consensus 367 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 446 (529)
++++++|+.|++++|.+++. .++.+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+.
T Consensus 314 ---l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~ 374 (457)
T 3bz5_A 314 ---LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTI 374 (457)
T ss_dssp ---CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEE
T ss_pred ---hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceee
Confidence 22335666666666666653 25566666666666666554 24455555555555443 2234
Q ss_pred CCCeEecCCCCCCChhHH
Q 009672 447 SLTLLNLSQNCNLTDKTL 464 (529)
Q Consensus 447 ~L~~L~l~~~~~l~~~~~ 464 (529)
.|..+++++| .++..+|
T Consensus 375 ~l~~l~l~~N-~l~g~ip 391 (457)
T 3bz5_A 375 TMPKETLTNN-SLTIAVS 391 (457)
T ss_dssp ECCCBCCBTT-BEEEECC
T ss_pred ecCccccccC-cEEEEcC
Confidence 4555666666 4554443
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.9e-29 Score=247.22 Aligned_cols=370 Identities=15% Similarity=0.074 Sum_probs=166.0
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCC-------------CCEEEcCCCCccchhH
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN-------------LTSLSFRRNNAITAQG 123 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~~ 123 (529)
+++++++++++.+ +..+..++++++|+.|++++| .+.+..+..++.+++ +++|++++|. +++ .
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~-l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSS-L 86 (454)
T ss_dssp ------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSC-C
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-ccc-C
Confidence 4566666666666 455555666666666666665 344444555555443 3666666665 222 1
Q ss_pred HHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCC-CCCCeEEccCCCCChhHHHHhhc
Q 009672 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKG 202 (529)
Q Consensus 124 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~ 202 (529)
|. -.++|++|++++|.. .+.+. ..++|++|++++| .+.+ +... ++|++|++++|.++... .+
T Consensus 87 p~---~~~~L~~L~l~~n~l-~~lp~---~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~~lp--~~-- 149 (454)
T 1jl5_A 87 PE---LPPHLESLVASCNSL-TELPE---LPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLEKLP--EL-- 149 (454)
T ss_dssp CS---CCTTCSEEECCSSCC-SSCCC---CCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCSSCC--CC--
T ss_pred CC---CcCCCCEEEccCCcC-Ccccc---ccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCCCCc--cc--
Confidence 11 135666666666532 22221 2256666666653 2322 1111 46666666666555321 12
Q ss_pred cCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccE
Q 009672 203 LSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 282 (529)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 282 (529)
..+++|++|++++|.+... +. ..++|++|++++|.+... + .+..+++|++
T Consensus 150 ------------------------~~l~~L~~L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~ 199 (454)
T 1jl5_A 150 ------------------------QNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTA 199 (454)
T ss_dssp ------------------------TTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCE
T ss_pred ------------------------CCCCCCCEEECCCCcCccc-CC---CcccccEEECcCCcCCcC-c-cccCCCCCCE
Confidence 2336666666666655431 11 124666666666665542 2 3555666666
Q ss_pred EEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCC
Q 009672 283 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 362 (529)
Q Consensus 283 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 362 (529)
|++++|.+.+ .+. ..++|+.|++++|.+... + .+..+++|+.|++++|.+.... ...++|+.|++++|.+
T Consensus 200 L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 200 IYADNNSLKK-LPD---LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYL 269 (454)
T ss_dssp EECCSSCCSS-CCC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCC
T ss_pred EECCCCcCCc-CCC---CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcc
Confidence 6666665543 111 124666666666655532 2 3555666666666666554321 1235566666666655
Q ss_pred ChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcC-CCCcEEEccCCCCChhhhhh
Q 009672 363 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 363 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~ 441 (529)
..... ..++|+.|++++|.+++.. ...++|+.|++++|.+++.. .. ++|++|++++|.+++. +.
T Consensus 270 ~~l~~----~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~l-p~- 334 (454)
T 1jl5_A 270 TDLPE----LPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIEL-PA- 334 (454)
T ss_dssp SCCCC----CCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSCC-CC-
T ss_pred cccCc----ccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCccccc-cc-
Confidence 54211 1245666666666555421 01245666666666555421 12 3566666666665542 11
Q ss_pred ccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh--hHHHhccCC-------------CCCcEEeecCcc
Q 009672 442 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPL-------------KNLRSLTLESCK 506 (529)
Q Consensus 442 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~ 506 (529)
.+++|++|++++| .++.. |. .+++|+.|++++|++.+ ..+..+..+ ++|+.|++++|+
T Consensus 335 --~~~~L~~L~L~~N-~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 335 --LPPRLERLIASFN-HLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp --CCTTCCEEECCSS-CCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred --cCCcCCEEECCCC-ccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 1355666666666 45432 22 34566666666666555 233333333 556666666666
Q ss_pred CCh
Q 009672 507 VTA 509 (529)
Q Consensus 507 ~~~ 509 (529)
++.
T Consensus 408 l~~ 410 (454)
T 1jl5_A 408 LRE 410 (454)
T ss_dssp ---
T ss_pred CCc
Confidence 553
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.8e-28 Score=247.57 Aligned_cols=310 Identities=18% Similarity=0.126 Sum_probs=203.0
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
.++++.++++++.++......++.+++|+.|++++| .+....+..|+.+++|++|++++|. ++...+..|+++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 467888888888888776666788888888888887 5777767788888888888888887 56666777788888888
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSM 215 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 215 (529)
|++++|......+..++.+++|++|++++ +.+....+..+..+++|+.|++++|.++... +
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~--------------- 188 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVD---L--------------- 188 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---G---------------
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCCcC---h---------------
Confidence 88888754433334467788888888887 4566666667778888888888888776532 1
Q ss_pred HHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH
Q 009672 216 IIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 295 (529)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 295 (529)
..+++|+.|+++++.+.. +...+.|+.|++++|.+...... ..++|+.|++++|.+.+ +
T Consensus 189 -----------~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~ 247 (597)
T 3oja_B 189 -----------SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--T 247 (597)
T ss_dssp -----------GGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--C
T ss_pred -----------hhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--C
Confidence 222777788887776654 23456677777777776543321 12467777777776654 2
Q ss_pred HhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 296 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~ 325 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDR 325 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTT
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCC
Confidence 3455666666666666666655555666666666666666665543 22234455666666666655532 233444555
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCCh
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 412 (529)
|+.|++++|.+...+ +..+++|+.|++++|.+..
T Consensus 326 L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 326 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 666666555555431 3344555555555555544
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.1e-28 Score=239.05 Aligned_cols=372 Identities=17% Similarity=0.061 Sum_probs=215.3
Q ss_pred hcCCceeEEEecCcccCchhhhhccCCCC-------------CCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccc
Q 009672 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSN-------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120 (529)
Q Consensus 54 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~-------------L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 120 (529)
...+++++|+++++.+++..+..++.+.+ ++.|++++| .++.... -.++|++|++++|.. +
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~----~~~~L~~L~l~~n~l-~ 104 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE----LPPHLESLVASCNSL-T 104 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS----CCTTCSEEECCSSCC-S
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC----CcCCCCEEEccCCcC-C
Confidence 34677888888888777777777776665 477888877 3544211 136788888888773 3
Q ss_pred hhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHh
Q 009672 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200 (529)
Q Consensus 121 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 200 (529)
+ +|. .+++|++|++++|.. ...+. ..++|++|++++| .+.+ .+ .++.+++|++|++++|.++...
T Consensus 105 ~-lp~---~~~~L~~L~l~~n~l-~~l~~---~~~~L~~L~L~~n-~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp---- 169 (454)
T 1jl5_A 105 E-LPE---LPQSLKSLLVDNNNL-KALSD---LPPLLEYLGVSNN-QLEK-LP-ELQNSSFLKIIDVDNNSLKKLP---- 169 (454)
T ss_dssp S-CCC---CCTTCCEEECCSSCC-SCCCS---CCTTCCEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSCCC----
T ss_pred c-ccc---ccCCCcEEECCCCcc-CcccC---CCCCCCEEECcCC-CCCC-Cc-ccCCCCCCCEEECCCCcCcccC----
Confidence 3 332 347788888887642 22111 1167888888874 4444 22 5778888888888888776421
Q ss_pred hccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCc
Q 009672 201 KGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 280 (529)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 280 (529)
.. .++|++|++++|.+... + .+..+++|+.|++++|.+.... . ..++|
T Consensus 170 -~~-------------------------~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L 217 (454)
T 1jl5_A 170 -DL-------------------------PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP-D---LPLSL 217 (454)
T ss_dssp -CC-------------------------CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC-C---CCTTC
T ss_pred -CC-------------------------cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC-C---CcCcc
Confidence 11 15788888888877663 2 5677788888888888776421 1 12478
Q ss_pred cEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC
Q 009672 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360 (529)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (529)
++|++++|.+. ..+ .+..+++|+.|++++|.+.... . .+++|+.|++++|.+.... ...++|+.+++++|
T Consensus 218 ~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred cEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccccC----cccCcCCEEECcCC
Confidence 88888888776 334 3667788888888887665422 1 2467888888887766532 12367888888888
Q ss_pred CCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcC-CCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh
Q 009672 361 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 361 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
.+..... ..++|+.|++++|.+... ... ++|+.|++++|++++.+. .+++|++|++++|.++....
T Consensus 288 ~l~~l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 288 IFSGLSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CCSEESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred ccCcccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc
Confidence 7765221 125788888888877652 223 478888888887776322 25778888888887775322
Q ss_pred hhccCCCCCCeEecCCCCCCCh--hHHHHHhCC-------------CCCCeeeccCCccChhHHHhccCCCCCcEEeecC
Q 009672 440 KHIKDLSSLTLLNLSQNCNLTD--KTLELISGL-------------TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 504 (529)
Q Consensus 440 ~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~l-------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 504 (529)
.+++|++|++++| .++. ..|..+..+ ++|+.|++++|++.+.+ .+ -++++.|.+.+
T Consensus 355 ----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~--~i--P~sl~~L~~~~ 425 (454)
T 1jl5_A 355 ----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP--DI--PESVEDLRMNS 425 (454)
T ss_dssp ----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC-------------------------------------------
T ss_pred ----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc--cc--hhhHhheeCcC
Confidence 3577888888887 5665 344444444 88999999999988631 11 13578888988
Q ss_pred ccCChh
Q 009672 505 CKVTAN 510 (529)
Q Consensus 505 ~~~~~~ 510 (529)
|.+...
T Consensus 426 ~~~~~~ 431 (454)
T 1jl5_A 426 ERVVDP 431 (454)
T ss_dssp ------
T ss_pred cccCCc
Confidence 877654
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.1e-27 Score=227.39 Aligned_cols=269 Identities=20% Similarity=0.218 Sum_probs=204.5
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
+.++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .+..+ .++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~--~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhh--cccccEEEC
Confidence 678888998888887666678888899999999888887767778888889999998888763 23222 378888999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccCh--hhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCC
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 387 (529)
++|.+.......+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+...... + .++|++|++++|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~--~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-L--PPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-C--CTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-c--cccCCEEECCCCcCC
Confidence 8888887777778888889999988888764 3345667788888888888887764322 2 268888888888888
Q ss_pred HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHH
Q 009672 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 388 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 467 (529)
...+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++...+..+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhc
Confidence 76666777888888888888888887766778888888888888888743 555777888888888888 6777655555
Q ss_pred hC------CCCCCeeeccCCccCh--hHHHhccCCCCCcEEeecCcc
Q 009672 468 SG------LTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 468 ~~------l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 506 (529)
.. .+.++.|++++|++.. ..+..|..+++++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 42 3678888888888764 334667778888888888874
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=7.7e-28 Score=228.54 Aligned_cols=246 Identities=19% Similarity=0.201 Sum_probs=122.0
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+....+..+..+++|++|++++|.+..... .+ .++|++|++++|.+....+..+..+++|+.|++
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS-SC--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc-cc--cccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 555555555555554444445555555555555555443221 11 134555555555444333333444455555555
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
.+|.+... ...+..+..+ +|+.|++++|.+..... .+ .++|++|++++|.+...
T Consensus 155 ~~n~l~~~----------------------~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 155 GGNPLENS----------------------GFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNKIQAI 208 (332)
T ss_dssp CSCCCBGG----------------------GSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSCCCCC
T ss_pred CCCccccC----------------------CCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCcCCcc
Confidence 44444320 0112222333 44444554444443211 11 13455555555555544
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
.+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++...+..+..
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~ 286 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCP 286 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCC-CCCccChhHccc
Confidence 334445555555555555555555444555556666666666655532 334555566666666666 455544443332
Q ss_pred ------CCCCCeeeccCCccC--hhHHHhccCCCCCcEEeecCcc
Q 009672 470 ------LTGLVSLNVSNSRIT--SAGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 470 ------l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 506 (529)
.+.|+.|++++|++. ...+.++..+++|+.+++++|+
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 355777777777765 3444566777777777777763
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.3e-26 Score=219.96 Aligned_cols=245 Identities=18% Similarity=0.186 Sum_probs=166.1
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+....+..+..+++|++|++++|.+..... .+ .++|++|++++|.+....+..+..+++|+.|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS-SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh-hh--cccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 666666666666655545556666666666666666553221 11 256777777777766555556667777777777
Q ss_pred CCCCCCh--hhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCC
Q 009672 310 DSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387 (529)
Q Consensus 310 ~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 387 (529)
++|.+.. ..+..+..+++|+.|++++|.++..... ..++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 7776643 3345566777777777777776543221 1267888888888877766677777888888888888887
Q ss_pred HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccC------CCCCCeEecCCCCCCCh
Q 009672 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 388 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~------~~~L~~L~l~~~~~l~~ 461 (529)
...+..+..+++|+.|++++|.++.. +..+..+++|++|++++|+++......+.. .+.++.+++++|+ +..
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~ 307 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQY 307 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCG
T ss_pred eeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc-ccc
Confidence 76555677788888888888887754 445677888888888888888776665532 3678889999884 432
Q ss_pred --hHHHHHhCCCCCCeeeccCCc
Q 009672 462 --KTLELISGLTGLVSLNVSNSR 482 (529)
Q Consensus 462 --~~~~~l~~l~~L~~L~l~~~~ 482 (529)
..+..+..++.++.+++++|+
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC----
T ss_pred cccCccccccccceeEEEecccC
Confidence 345677788889999988874
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.5e-26 Score=219.72 Aligned_cols=245 Identities=20% Similarity=0.214 Sum_probs=166.1
Q ss_pred CCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhh
Q 009672 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFI 211 (529)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~ 211 (529)
+++.++++++. +...+..+ .++|+.|++++ +.+....+..+..+++|++|++++|.++...+..+..+
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------- 101 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL-------- 101 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC--------
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc--------
Confidence 68999998874 33444333 37999999999 45776667789999999999999999987655555444
Q ss_pred hhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCC
Q 009672 212 LCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 291 (529)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 291 (529)
++|++|++++|.+.... ..+ .++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 102 ------------------~~L~~L~L~~n~l~~l~-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 102 ------------------RKLQKLYISKNHLVEIP-PNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp ------------------TTCCEEECCSSCCCSCC-SSC--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred ------------------CCCCEEECCCCcCCccC-ccc--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 99999999999887532 222 279999999999998877777889999999999999886
Q ss_pred h--HHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhh
Q 009672 292 D--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369 (529)
Q Consensus 292 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 369 (529)
. ..+..+..+ +|+.|++++|.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 161 NSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp GGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred cCCCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 3 234445555 78888888876654221 11 256666666666665555455555666666666666555544444
Q ss_pred hcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHH
Q 009672 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 414 (529)
Q Consensus 370 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 414 (529)
+..+++|+.|++++|.+... +..+..+++|+.|++++|.++..+
T Consensus 237 ~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCC
T ss_pred hhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccC
Confidence 55555555555555555432 223444444445544444444433
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=8.9e-27 Score=218.70 Aligned_cols=249 Identities=17% Similarity=0.109 Sum_probs=162.0
Q ss_pred CceeEEEecCcccCc--hhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 57 SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
.++++|+++++.+++ ..+..++++++|++|++++++.+....+..|+++++|++|++++|. +++..|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCCCCC
Confidence 679999999999988 7788899999999999996335666667888899999999999887 5667777888888888
Q ss_pred EEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCC-CCCeEEccCCCCChhHHHHhhccCccchhhhhh
Q 009672 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLSISSVIFILC 213 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (529)
+|++++|......+..+..+++|++|++++ +.+.+..+..+..++ +|++|++++|.++...+..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l---------- 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------- 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC----------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC----------
Confidence 888888765445566677778888888877 445555566666666 77777777776654333333322
Q ss_pred hhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChH
Q 009672 214 SMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 293 (529)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 293 (529)
+ |+.|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+.+.
T Consensus 198 ----------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 198 ----------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp ----------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC
T ss_pred ----------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc
Confidence 3 66666666665554455555566666666666655443322 34445555555555555444
Q ss_pred HHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCC
Q 009672 294 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 336 (529)
Q Consensus 294 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 336 (529)
.|..+..+++|+.|++++|.+....+.. ..+++|+.+++.+|
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 4444555555555555555443322222 33444444444444
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.9e-27 Score=223.28 Aligned_cols=248 Identities=19% Similarity=0.172 Sum_probs=139.4
Q ss_pred CCCeEecCCCcCCh--hhhHhhhcCCCccEEEccC-CCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeE
Q 009672 255 SLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 331 (529)
Q Consensus 255 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (529)
+++.|+++++.+.+ ..+..+..+++|++|++++ +.+.+..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444433 3333444444444444442 44433334444444555555555544443344444455555555
Q ss_pred EcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCC-CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCC
Q 009672 332 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410 (529)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 410 (529)
++++|.+....+..+..+++|+.|++++|.+....+..+..++ +|+.|++++|.+....+..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 5555555444444455555555555555555544444555554 566666666665544444555554 66666666666
Q ss_pred ChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHh
Q 009672 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 490 (529)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 490 (529)
++..+..+..+++|+.|++++|.++...+. +..+++|++|++++| .++...|..+..+++|+.|++++|++++..+..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 655555666667777777777766654333 555677777777777 666556666677777777777777776554433
Q ss_pred ccCCCCCcEEeecCcc
Q 009672 491 LKPLKNLRSLTLESCK 506 (529)
Q Consensus 491 ~~~~~~L~~L~l~~~~ 506 (529)
..+++|+.+++++|+
T Consensus 288 -~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNK 302 (313)
T ss_dssp -TTGGGSCGGGTCSSS
T ss_pred -ccccccChHHhcCCC
Confidence 566777777777775
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=6.2e-26 Score=217.34 Aligned_cols=279 Identities=18% Similarity=0.205 Sum_probs=225.3
Q ss_pred ccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEE
Q 009672 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
.|+.....+.+++.+.... ..+ .++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccccc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3455566777777776542 222 3589999999999887766678888999999999998887666678889999999
Q ss_pred ECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccCC-CCChhhhhhhcCCCCCcEEECCCCC
Q 009672 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 385 (529)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~ 385 (529)
++++|.+.......+..+++|++|++++|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999998887666668889999999999998876554 46778899999999988 4776666778888999999999999
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhc---cCCCCCCeEecCCCCCCChh
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLTDK 462 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~~l~~~ 462 (529)
+....+..++.+++|+.|++++|.++..+...+..+++|++|++++|.+++..+..+ ...+.++.++++++ .+.+.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDE 264 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCc
Confidence 888767778888999999999999988777777788999999999998887654433 23567888899888 67764
Q ss_pred ----HHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 463 ----TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 463 ----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
++..+..+++|+.|++++|.+.......+..+++|++|++++|+++..
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 566788999999999999999976555578899999999999988764
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=205.56 Aligned_cols=257 Identities=22% Similarity=0.184 Sum_probs=195.2
Q ss_pred CCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCE
Q 009672 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 56 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 135 (529)
.+++++|+++++.+++.....++.+++|++|++++| .+....+..|..+++|++|++++|. ++...+..+.++++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 357999999999998877778899999999999988 6887777889999999999999998 56666667899999999
Q ss_pred EeccCcccccccc-ccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhh
Q 009672 136 LDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCS 214 (529)
Q Consensus 136 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 214 (529)
|++++|....... ..+..+++|++|++++|+.+....+..+..+++|++|++++|.++...+..+..
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------------ 196 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS------------ 196 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT------------
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc------------
Confidence 9999985443333 467889999999999876677766778888999999999999887654444444
Q ss_pred hHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhh---cCCCccEEEccCCCCC
Q 009672 215 MIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLKVLNLGFNEIT 291 (529)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~ 291 (529)
+++|++|+++++.+.......+..+++|+.|++++|.+....+..+. ....++.++++++.+.
T Consensus 197 --------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 197 --------------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp --------------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred --------------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 48999999999988776555566788999999999887764433322 3456777777777766
Q ss_pred hH----HHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccCh
Q 009672 292 DE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 340 (529)
Q Consensus 292 ~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 340 (529)
+. .+..+..+++|+.|++++|.++......+..+++|+.|++++|++..
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 52 34556677777777777777665444445667777777777776554
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=213.44 Aligned_cols=247 Identities=23% Similarity=0.249 Sum_probs=154.9
Q ss_pred CccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECC
Q 009672 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310 (529)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (529)
..+.++..+..+... |..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345666666555542 2222 2567777777777766666666677777777777777665555566677777777777
Q ss_pred CCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC-CCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
+|.+.......+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+.++++|+.|++++|.++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 77666655555666777777777777766655555666677777777663 44444444566666677777776666643
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
..+..+++|+.|++++|.++...+..+.++++|++|++++|.++...+..+.++++|++|++++| .++...+..+..
T Consensus 201 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 --PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTP 277 (440)
T ss_dssp --CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSS
T ss_pred --cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhcc
Confidence 23455566666666666666655555666666666666666666655555666666666666666 555555555555
Q ss_pred CCCCCeeeccCCcc
Q 009672 470 LTGLVSLNVSNSRI 483 (529)
Q Consensus 470 l~~L~~L~l~~~~~ 483 (529)
+++|+.|++++|++
T Consensus 278 l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEcCCCCc
Confidence 66666666666654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.2e-24 Score=213.69 Aligned_cols=246 Identities=23% Similarity=0.266 Sum_probs=138.2
Q ss_pred ccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCC
Q 009672 232 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 311 (529)
Q Consensus 232 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (529)
...++.++..+... |..+ .++++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-PQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCcc-CCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45566555555432 2111 24666677766666665555666666666666666666654445566666666666666
Q ss_pred CCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC-CCChhhhhhhcCCCCCcEEECCCCCCCHHH
Q 009672 312 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG 390 (529)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 390 (529)
|.+.......+..+++|+.|++++|.+.......+..+++|+.|+++++ .+.......+.++++|+.|++++|.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 6666555555566666666666666665554455556666666666653 34443344455556666666666655543
Q ss_pred HHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCC
Q 009672 391 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 470 (529)
Q Consensus 391 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 470 (529)
..+..+++|+.|++++|.++...+..+.++++|+.|++++|.++...+..+.++++|++|++++| .++...+..+..+
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 23444555555555555555554555555555555555555555554445555555555555555 4544444444445
Q ss_pred CCCCeeeccCCcc
Q 009672 471 TGLVSLNVSNSRI 483 (529)
Q Consensus 471 ~~L~~L~l~~~~~ 483 (529)
++|+.|++++|++
T Consensus 290 ~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 290 RYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEccCCCc
Confidence 5555555555543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.7e-24 Score=200.78 Aligned_cols=224 Identities=21% Similarity=0.229 Sum_probs=112.4
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 312 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (529)
+.++.++..+.... . ...++|+.|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip-~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP-V--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCC-T--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCC-c--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45555555444321 1 12345566666665555544444555555555555555554433444445555555555555
Q ss_pred C-CChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHH
Q 009672 313 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 391 (529)
Q Consensus 313 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 391 (529)
. +....+..+..+++|+.|++++|.+... .+..+..+++|++|++++|.+....+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL------------------------GPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC------------------------CTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE------------------------CHhHhhCCcCCCEEECCCCcccccCH
Confidence 3 4433334444444555555544444433 33334444444444444444444333
Q ss_pred HHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 392 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 392 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
..++.+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...+..+..++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCc
Confidence 33444455555555555555444444455555555555555555554555555555555555555 45554455555555
Q ss_pred CCCeeeccCCccC
Q 009672 472 GLVSLNVSNSRIT 484 (529)
Q Consensus 472 ~L~~L~l~~~~~~ 484 (529)
+|+.|++++|++.
T Consensus 226 ~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 226 ALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCEE
T ss_pred ccCEEeccCCCcc
Confidence 5555555555543
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=7.3e-25 Score=206.28 Aligned_cols=237 Identities=17% Similarity=0.202 Sum_probs=114.7
Q ss_pred cCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEE
Q 009672 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 308 (529)
Q Consensus 229 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 308 (529)
+++|++|++++|.+....+..+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+ +...++|+.|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEEE
Confidence 3455555555555555444455555555555555555543222 4445555555555554432 12235555555
Q ss_pred CCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECCCCCCC
Q 009672 309 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQIT 387 (529)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~ 387 (529)
+++|.+..... ..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+. .+++|++|++++|.++
T Consensus 106 l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 55554443322 1234555555555555544444444455555555555555544333332 3455555555555554
Q ss_pred HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC-hhHHHH
Q 009672 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLEL 466 (529)
Q Consensus 388 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~ 466 (529)
.. .....+++|+.|++++|.++..++. +..+++|++|++++|.++.. +..+..+++|+.|++++| .+. ...+..
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N-~~~~~~~~~~ 257 (317)
T 3o53_A 183 DV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRDF 257 (317)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CCBHHHHHHH
T ss_pred cc--ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCC-CccCcCHHHH
Confidence 43 1112345555555555555544332 44455555555555555432 333444455555555555 333 334444
Q ss_pred HhCCCCCCeeeccC
Q 009672 467 ISGLTGLVSLNVSN 480 (529)
Q Consensus 467 l~~l~~L~~L~l~~ 480 (529)
+..+++|+.|++++
T Consensus 258 ~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 258 FSKNQRVQTVAKQT 271 (317)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HhccccceEEECCC
Confidence 55555555555543
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.3e-24 Score=203.97 Aligned_cols=247 Identities=21% Similarity=0.222 Sum_probs=157.7
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHH--HHhhcCCCCCCEEECC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLD 310 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 310 (529)
+.++.++..+.... .. ..++|+.|++++|.+.......+..+++|++|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip-~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCC-CC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777776665432 11 2357888888888877655555677788888888887775321 3445567788888888
Q ss_pred CCCCChhhhhhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH-
Q 009672 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 388 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 388 (529)
+|.+.. .+..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 776654 23346667778888877777665443 456667777777777777666555556666777777777776654
Q ss_pred HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHh
Q 009672 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468 (529)
Q Consensus 389 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 468 (529)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++| .++...+..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCcccCHHHHH
Confidence 22344556666666666666666655555666666666666666666555545555666666666666 55555555555
Q ss_pred CCC-CCCeeeccCCccC
Q 009672 469 GLT-GLVSLNVSNSRIT 484 (529)
Q Consensus 469 ~l~-~L~~L~l~~~~~~ 484 (529)
.++ +|+.|++++|++.
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 553 6666666666654
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=6.7e-24 Score=196.79 Aligned_cols=225 Identities=20% Similarity=0.228 Sum_probs=190.9
Q ss_pred cEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC
Q 009672 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 360 (529)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (529)
.+++.+++.+.. .|. ...+++++|+++++.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666555543 222 22467888888888777766667778888888888888887776677788889999999988
Q ss_pred C-CChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh
Q 009672 361 G-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 361 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
. +....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 777667788889999999999999988766778899999999999999998877778999999999999999998877
Q ss_pred hhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 440 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
..+..+++|++|++++| .++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.
T Consensus 171 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 77889999999999999 8888888889999999999999999999888889999999999999998864
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=7.5e-24 Score=209.85 Aligned_cols=226 Identities=21% Similarity=0.216 Sum_probs=200.5
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++++.|+++++.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 78999999999998877788999999999999999998887788889999999999999998766666888999999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCC-ccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 388 (529)
++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+... ..+..+++|+.|++++|.+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 999988777778889999999999985 45555556678899999999999988864 357788999999999999998
Q ss_pred HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 389 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
..+..+..+++|+.|++++|+++...+..+..+++|+.|++++|.++......+..+++|++|++++|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 877888999999999999999999888888999999999999999998877778889999999999995
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=7.8e-24 Score=208.94 Aligned_cols=226 Identities=21% Similarity=0.240 Sum_probs=201.9
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++++.|+++++.+....+..|.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 78999999999998877788999999999999999999888788899999999999999998666667889999999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCC-ccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 388 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 388 (529)
++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.... .+..+++|+.|++++|.+..
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence 999998877778889999999999985 455555567888999999999999988643 47788999999999999998
Q ss_pred HHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 389 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 389 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
..+..+..+++|+.|++++|+++...+..+.++++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 877888899999999999999999888889999999999999999998877788889999999999995
No 63
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=5.4e-23 Score=195.79 Aligned_cols=260 Identities=19% Similarity=0.229 Sum_probs=164.1
Q ss_pred CCcHHHHHHHHHHhhhcccCChhhhhhhccCccceeccCCCCCCCHHHHHHHHhcCCceeEEEecCcccCchhhhhccCC
Q 009672 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (529)
Q Consensus 1 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~ 80 (529)
.||.|++..||.++.... +..+..++..|...... ...+++++++++.+.+ ..+..+
T Consensus 11 ~LP~eil~~If~~L~~~d-------------------~~~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~~---~~~~~~ 67 (336)
T 2ast_B 11 SLPDELLLGIFSCLCLPE-------------------LLKVSGVCKRWYRLASD-ESLWQTLDLTGKNLHP---DVTGRL 67 (336)
T ss_dssp SSCHHHHHHHHTTSCHHH-------------------HHHTTSSCHHHHHHHTC-STTSSEEECTTCBCCH---HHHHHH
T ss_pred hCCHHHHHHHHHhCCHHH-------------------HHHHHHHHHHHHHHhcC-chhheeeccccccCCH---HHHHhh
Confidence 489999999998774321 11123457778776653 5669999999988763 345555
Q ss_pred --CCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchh-HHHHHhCCCCCCEEeccCccccccccccccCCCcC
Q 009672 81 --SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157 (529)
Q Consensus 81 --~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 157 (529)
+.++.|++++| .+....+. +..+++|++|++++|. +++. .+..+..+++|++|++++|......+..++.+++|
T Consensus 68 ~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 68 LSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp HHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred hhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 78999999987 46554333 5578999999999998 5554 78888899999999999885444455566677777
Q ss_pred cEEeccCCcccCcc-ccccccCCCCCCeEEccCC-CCChhHH-HHhhccCccchhhhhhhhHHHhhhhhhhhcccC-Ccc
Q 009672 158 ESLNIKWCNCITDS-DMKPLSGLTNLKSLQISCS-KVTDSGI-AYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQ-KLT 233 (529)
Q Consensus 158 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~ 233 (529)
++|++++|..+++. .+..+..+++|++|++++| .+++... ..+.. ++ +|+
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--------------------------l~~~L~ 198 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH--------------------------VSETIT 198 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH--------------------------SCTTCC
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh--------------------------cccCCC
Confidence 77777776555543 2233556667777777666 6655322 22222 25 666
Q ss_pred EEEccCC--CCC-HHHHHHhhcCCCCCeEecCCCc-CChhhhHhhhcCCCccEEEccCC-CCChHHHHhhcCCCCCCEEE
Q 009672 234 LLNLEGC--PVT-AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLN 308 (529)
Q Consensus 234 ~L~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 308 (529)
+|++++| .+. ...+..+..+++|+.|++++|. ++...+..+..+++|++|++++| .+.......+..+++|+.|+
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 6666666 344 2334445556666666666665 44444445555566666666555 23222222344455555555
Q ss_pred CCCC
Q 009672 309 LDSC 312 (529)
Q Consensus 309 l~~~ 312 (529)
+.+|
T Consensus 279 l~~~ 282 (336)
T 2ast_B 279 VFGI 282 (336)
T ss_dssp CTTS
T ss_pred ccCc
Confidence 5555
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=2.8e-24 Score=202.27 Aligned_cols=261 Identities=16% Similarity=0.173 Sum_probs=208.8
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
..++..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 567777888887777666667778899999999999988877888899999999999998875443 788999999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+... ...++|+.|++++|.+..... ..+++|+.|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99876542 245899999999998876543 3467899999999999887777788888999999999988876
Q ss_pred HHHHH-hcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHh
Q 009672 390 GLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 468 (529)
Q Consensus 390 ~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 468 (529)
.+..+ ..+++|+.|++++|.++.... ...+++|++|++++|.++...+. +..+++|++|++++| .++. ++..+.
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N-~l~~-l~~~~~ 234 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALR 234 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCC-cccc-hhhHhh
Confidence 55555 367889999999998887632 23478899999999988876443 777889999999998 7775 455677
Q ss_pred CCCCCCeeeccCCccC-hhHHHhccCCCCCcEEeecCc
Q 009672 469 GLTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC 505 (529)
Q Consensus 469 ~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 505 (529)
.+++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 7889999999999888 555667778888888888755
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.9e-24 Score=202.76 Aligned_cols=261 Identities=21% Similarity=0.241 Sum_probs=209.6
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhh--hHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEE
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG--CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
+++++|+++++.+.......|..+++|+.|++++|.+.... +..+..+++|++|++++|.+.. .+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 68999999999988765556789999999999999987542 3555678999999999998874 45558889999999
Q ss_pred ECCCCCCChhhh-hhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCCh-hhhhhhcCCCCCcEEECCCCC
Q 009672 308 NLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQ 385 (529)
Q Consensus 308 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 385 (529)
++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999997766544 567889999999999999887777778889999999999998876 456678889999999999999
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCC-CCCeEecCCCCCCChhH-
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKT- 463 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~- 463 (529)
+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..++ +|++|++++| .++...
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N-~~~~~c~ 265 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-DFACTCE 265 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC-CEECSGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC-CeecccC
Confidence 9987677888999999999999999988777788999999999999999998888888885 9999999999 444221
Q ss_pred -HHHHhCCCCCCeeeccCCccChhHHHhcc
Q 009672 464 -LELISGLTGLVSLNVSNSRITSAGLRHLK 492 (529)
Q Consensus 464 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 492 (529)
......+...+.+.+..+.+.-..|..+.
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred hHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 11111123444455555555444444443
No 66
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.5e-22 Score=194.79 Aligned_cols=237 Identities=20% Similarity=0.221 Sum_probs=113.5
Q ss_pred HHhhcCCCCCeEecCCCcCChhhhHh----hhcCCCccEEEccCCCC---ChHHHHh-------hcCCCCCCEEECCCCC
Q 009672 248 DSLSALGSLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEI---TDECLVH-------LKGLTNLESLNLDSCG 313 (529)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~---~~~~~~~-------~~~~~~L~~L~l~~~~ 313 (529)
..+..+++|+.|++++|.+....+.. +..+++|++|++++|.+ .+..|.. +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34556677777777777776654433 34566777777766532 2222222 2456666666666665
Q ss_pred CCh----hhhhhhcCCCCCCeEEcCCCccChhhhhhccC----C---------CCCCeEeccCCCCChhhhh----hhcC
Q 009672 314 IGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG----L---------TNLESINLSFTGISDGSLR----KLAG 372 (529)
Q Consensus 314 ~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~~----~l~~ 372 (529)
+.. ..+..+..+++|+.|++++|.++...+..+.. + ++|+.|++++|.+++.... .+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 554 23334455566666666666554433322221 2 4555555555555422211 2334
Q ss_pred CCCCcEEECCCCCCCHHH----HH-HHhcCCCCCEEecCCCCCC----hHHHHhhhcCCCCcEEEccCCCCChhhhh---
Q 009672 373 LSSLKSLNLDARQITDTG----LA-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVK--- 440 (529)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~l~----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--- 440 (529)
+++|+.|++++|.+...+ .. .+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+++.+..
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 445555555555554321 11 2334445555555555443 22233344444555555555554443222
Q ss_pred -hcc--CCCCCCeEecCCCCCCCh----hHHHHH-hCCCCCCeeeccCCccCh
Q 009672 441 -HIK--DLSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 441 -~~~--~~~~L~~L~l~~~~~l~~----~~~~~l-~~l~~L~~L~l~~~~~~~ 485 (529)
.+. .+++|++|++++| .++. ..+..+ .++++|+.|++++|++++
T Consensus 266 ~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 121 1444555555444 4444 233333 334444444444444443
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.5e-23 Score=195.32 Aligned_cols=222 Identities=21% Similarity=0.229 Sum_probs=130.2
Q ss_pred cCCceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCC
Q 009672 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (529)
Q Consensus 55 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 134 (529)
..+++++|+|+++.++ ..+..++++++|++|++++| .+. ..+..++.+++|++|++++|. ++ .+|..+.++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNP-LR-ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCC-CC-CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCc-cc-cCcHHHhcCcCCC
Confidence 3578999999999988 55666778999999999987 566 446778889999999999987 44 5677888899999
Q ss_pred EEeccCcccccccccccc---------CCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCc
Q 009672 135 KLDLERCTRIHGGLVNLK---------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSI 205 (529)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 205 (529)
+|++++|......+..+. .+++|++|++++| .+. ..+..+..+++|++|++++|.++.... .
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~-~------ 224 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPASIANLQNLKSLKIRNSPLSALGP-A------ 224 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-CCCGGGGGCTTCCEEEEESSCCCCCCG-G------
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC-cchHhhcCCCCCCEEEccCCCCCcCch-h------
Confidence 999988765555544333 2555555555552 233 233445555555555555555443111 1
Q ss_pred cchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEc
Q 009672 206 SSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 285 (529)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 285 (529)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 225 --------------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 225 --------------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp --------------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred --------------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 122245555555554444433344444444444444444444434444444444444444
Q ss_pred cCCCCChHHHHhhcCCCCCCEEECC
Q 009672 286 GFNEITDECLVHLKGLTNLESLNLD 310 (529)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (529)
++|.+.+..|..+..+++++.+.+.
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCchhhccHHHhhccCceEEeCC
Confidence 4444444444444444444444443
No 68
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.1e-21 Score=186.83 Aligned_cols=252 Identities=19% Similarity=0.214 Sum_probs=142.9
Q ss_pred CCccEEEccCCCCCHHHHHHhhcC--CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChH-HHHhhcCCCCCCE
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLES 306 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 306 (529)
..++.++++++.+.. ..+..+ ++++.++++++.+....+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 346777777776653 334444 6777777777766554332 33566777777777766654 4555666777777
Q ss_pred EECCCCCCChhhhhhhcCCCCCCeEEcCCC-ccChh-hhhhccCCCCCCeEeccCC-CCChh-hhhhhcCCC-CCcEEEC
Q 009672 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNL 381 (529)
Q Consensus 307 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l 381 (529)
|++++|.+....+..++.+++|++|++++| .+++. .+..+..+++|+.|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777666555566666677777777666 45543 2333555666666666666 56543 233344555 6666666
Q ss_pred CCC--CCCH-HHHHHHhcCCCCCEEecCCCC-CChHHHHhhhcCCCCcEEEccCC-CCChhhhhhccCCCCCCeEecCCC
Q 009672 382 DAR--QITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 382 ~~~--~~~~-~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
++| .+++ ..+..+..+++|+.|++++|. +++..+..+..+++|++|++++| .+...+...+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 665 3442 223344456666666666665 45444445555666666666665 344443344555566666666665
Q ss_pred CCCChhHHHHHhCCCCCCeeeccCCccChhHHH
Q 009672 457 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 489 (529)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 489 (529)
+++.....+. ..++.|++++|.+++..+.
T Consensus 283 --i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 --VPDGTLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp --SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred --cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence 4433333332 1233444555555554443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=2.4e-24 Score=202.24 Aligned_cols=204 Identities=20% Similarity=0.213 Sum_probs=143.5
Q ss_pred CCCCCCEEECCCCCCChhhhhhh--cCCCCCCeEEcCCCccChhhhhhccCC-----CCCCeEeccCCCCChhhhhhhcC
Q 009672 300 GLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAG 372 (529)
Q Consensus 300 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~ 372 (529)
.+++|++|++++|.+....+..+ ..+++|+.|++++|.++.. +..++.+ ++|++|++++|.+....+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45666666666666554444433 5666777777777766554 3333333 77888888888777766677777
Q ss_pred CCCCcEEECCCCCCCHH--HHHHH--hcCCCCCEEecCCCCCCh---HHHHhhhcCCCCcEEEccCCCCChhhh-hhccC
Q 009672 373 LSSLKSLNLDARQITDT--GLAAL--TSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKD 444 (529)
Q Consensus 373 ~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~l~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~ 444 (529)
+++|++|++++|.+.+. .+..+ +.+++|+.|++++|.++. .....+.++++|++|++++|.+++..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 88888888888877653 12333 677888888888888873 333445678888889988888887653 34556
Q ss_pred CCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
+++|++|++++| .++. +|..+. ++|+.|++++|++.+. +. +..+++|++|++++|+++..
T Consensus 252 l~~L~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTTCCEEECTTS-CCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cCCCCEEECCCC-ccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 788999999988 6774 343333 7899999999988876 33 77889999999999988753
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.6e-23 Score=197.57 Aligned_cols=236 Identities=16% Similarity=0.120 Sum_probs=165.4
Q ss_pred CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEE
Q 009672 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (529)
.++++.|+++++.+.. .+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.. .+..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCEEE
Confidence 4677777777777663 3444556777777777777766 455556667777777777776653 344566666677776
Q ss_pred cCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCCh
Q 009672 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 412 (529)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 412 (529)
+++|......+..+.. ..+ ...+.++++|++|++++|.++.. +..++.+++|+.|++++|.++.
T Consensus 157 L~~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc
Confidence 6665443332221111 100 11234567788888888777743 4557778888888888888876
Q ss_pred HHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhcc
Q 009672 413 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 492 (529)
Q Consensus 413 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 492 (529)
.++ .+..+++|++|++++|.+.+..+..+..+++|++|++++| .+....|..+..+++|+.|++++|++.+..|..+.
T Consensus 221 l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 221 LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred Cch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 543 5778888888888888887777777888888999999888 56666777788889999999999888888888888
Q ss_pred CCCCCcEEeecCccCCh
Q 009672 493 PLKNLRSLTLESCKVTA 509 (529)
Q Consensus 493 ~~~~L~~L~l~~~~~~~ 509 (529)
.+++|+.+++..+.+..
T Consensus 299 ~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 299 QLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GSCTTCEEECCGGGSCC
T ss_pred hccCceEEeCCHHHHHH
Confidence 88999999888875543
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.2e-21 Score=189.92 Aligned_cols=255 Identities=18% Similarity=0.196 Sum_probs=196.2
Q ss_pred hcccCCccEEEccCCCCCHHHHHH----hhcCCCCCeEecCCCcCC---hhhhHh-------hhcCCCccEEEccCCCCC
Q 009672 226 LTSLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCEK-------FSKIGSLKVLNLGFNEIT 291 (529)
Q Consensus 226 ~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~---~~~~~~-------l~~~~~L~~L~l~~~~~~ 291 (529)
+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+. ...+.. +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 566699999999999988865544 567899999999997443 232333 367899999999999998
Q ss_pred h----HHHHhhcCCCCCCEEECCCCCCChhhhhhhcC----C---------CCCCeEEcCCCccChhhh----hhccCCC
Q 009672 292 D----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLSGLT 350 (529)
Q Consensus 292 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~---------~~L~~L~l~~~~~~~~~~----~~~~~~~ 350 (529)
. ..+..+..+++|++|++++|.++......+.. + ++|++|++++|.++.... ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 7 46667888999999999999887554444433 3 899999999999874433 3566789
Q ss_pred CCCeEeccCCCCChhh-----hhhhcCCCCCcEEECCCCCCCH----HHHHHHhcCCCCCEEecCCCCCChHHH----Hh
Q 009672 351 NLESINLSFTGISDGS-----LRKLAGLSSLKSLNLDARQITD----TGLAALTSLTGLTHLDLFGARITDSGA----AY 417 (529)
Q Consensus 351 ~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~----~~ 417 (529)
+|+.|++++|.+.+.. +..+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.+++.+. ..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 9999999999998542 2267789999999999999963 335567789999999999999998743 34
Q ss_pred hh--cCCCCcEEEccCCCCChh----hhhhc-cCCCCCCeEecCCCCCCChhHH--HHHh-CCCCCCeeeccCC
Q 009672 418 LR--NFKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELIS-GLTGLVSLNVSNS 481 (529)
Q Consensus 418 ~~--~~~~L~~L~l~~~~l~~~----~~~~~-~~~~~L~~L~l~~~~~l~~~~~--~~l~-~l~~L~~L~l~~~ 481 (529)
+. .+++|++|++++|.++.. .+..+ .++++|++|++++| .++...+ ..+. .+++++.+.+...
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 43 389999999999999983 44445 56899999999999 6666552 3332 3566666666554
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.8e-22 Score=192.33 Aligned_cols=252 Identities=19% Similarity=0.224 Sum_probs=165.9
Q ss_pred EEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhh----HhhhcCC-CccEEEccCCCCChHHHHhhcCC-----CC
Q 009672 234 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKGL-----TN 303 (529)
Q Consensus 234 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 303 (529)
.++++.+.+.+..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677888887777666666679999999988877665 5566677 88888888888876545444442 88
Q ss_pred CCEEECCCCCCChhhhhh----hcCC-CCCCeEEcCCCccChhhhhhc----cC-CCCCCeEeccCCCCChhhhh----h
Q 009672 304 LESLNLDSCGIGDEGLVN----LTGL-CNLKCLELSDTQVGSSGLRHL----SG-LTNLESINLSFTGISDGSLR----K 369 (529)
Q Consensus 304 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~----~ 369 (529)
|++|++++|.++...+.. +..+ ++|+.|++++|.++......+ .. +++|+.|++++|.+++.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888776554443 3344 788888888888766554433 33 35788888888877753333 3
Q ss_pred hcCCC-CCcEEECCCCCCCHHHHHH----HhcC-CCCCEEecCCCCCChHH----HHhhhc-CCCCcEEEccCCCCChhh
Q 009672 370 LAGLS-SLKSLNLDARQITDTGLAA----LTSL-TGLTHLDLFGARITDSG----AAYLRN-FKNLRSLEICGGGLTDAG 438 (529)
Q Consensus 370 l~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~----~~~~~~-~~~L~~L~l~~~~l~~~~ 438 (529)
+...+ +|++|++++|.++...+.. +..+ ++|+.|++++|.+++.+ +..+.. .++|++|++++|.+++.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 7888888888776654433 3344 47888888888777632 233333 457888888887777655
Q ss_pred hhh----ccCCCCCCeEecCCCCC---CChhHHH----HHhCCCCCCeeeccCCccChh
Q 009672 439 VKH----IKDLSSLTLLNLSQNCN---LTDKTLE----LISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 439 ~~~----~~~~~~L~~L~l~~~~~---l~~~~~~----~l~~l~~L~~L~l~~~~~~~~ 486 (529)
... +..+++|++|++++| . ++..... .+..+++|+.|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 432 345577777777777 4 3332222 334566677777777777654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6.8e-23 Score=203.89 Aligned_cols=236 Identities=18% Similarity=0.177 Sum_probs=163.7
Q ss_pred CCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEE
Q 009672 253 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (529)
+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.... ..++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3478888888888887777777788888888888888765443 777888888888887655422 337788888
Q ss_pred cCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHh-cCCCCCEEecCCCCCC
Q 009672 333 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARIT 411 (529)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~ 411 (529)
+++|.+....+ ..+++|+.|++++|.+....+..++.+++|+.|++++|.++...+..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 88877766543 2356777778877777776666677777777777777777765555554 6777777777777777
Q ss_pred hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC-hhHHHh
Q 009672 412 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT-SAGLRH 490 (529)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~ 490 (529)
+..+ ...+++|+.|++++|.+++..+. +..+++|+.|++++| .++. +|..+..+++|+.|++++|++. +..+..
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 6532 23467777777777777765433 666777777777777 5664 3445666777777777777776 444455
Q ss_pred ccCCCCCcEEeec
Q 009672 491 LKPLKNLRSLTLE 503 (529)
Q Consensus 491 ~~~~~~L~~L~l~ 503 (529)
+..++.|+.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 5666666666664
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=9.9e-24 Score=198.07 Aligned_cols=247 Identities=20% Similarity=0.176 Sum_probs=192.6
Q ss_pred cCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCCh-hhhHhhh-------cCCCccEEEccCCCCChHHHHhh--
Q 009672 229 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFS-------KIGSLKVLNLGFNEITDECLVHL-- 298 (529)
Q Consensus 229 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~-- 298 (529)
.++|+.|+++++.+ . .+..+... |+.|+++++.+.. ..+..+. .+++|++|++++|.+.+..+..+
T Consensus 42 ~~~L~~l~l~~n~l-~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT-C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc-c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 36788888888887 3 34434332 7777888777643 2222222 58899999999999886666654
Q ss_pred cCCCCCCEEECCCCCCChhhhhhhcCC-----CCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChh--hhhhh-
Q 009672 299 KGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRKL- 370 (529)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l- 370 (529)
..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+..++.+++|+.|++++|.+... .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7899999999999988765 4455544 8999999999999888778889999999999999987653 22333
Q ss_pred -cCCCCCcEEECCCCCCCH---HHHHHHhcCCCCCEEecCCCCCChHHH-HhhhcCCCCcEEEccCCCCChhhhhhccCC
Q 009672 371 -AGLSSLKSLNLDARQITD---TGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDL 445 (529)
Q Consensus 371 -~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 445 (529)
..+++|++|++++|.+.. .....+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++.. +..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 788999999999999983 333455688999999999999988653 3456689999999999999844 44444
Q ss_pred CCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChh
Q 009672 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
++|++|++++| .++.. |. +..+++|+.|++++|++++.
T Consensus 274 ~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCC-CCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 79999999999 78876 44 88899999999999998763
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6.3e-23 Score=204.10 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=199.1
Q ss_pred cccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCE
Q 009672 227 TSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 306 (529)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 306 (529)
..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+ +..+++|++|++++|.+.+ +...++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCE
Confidence 344589999999999988777788999999999999999876554 7788999999999998864 234489999
Q ss_pred EECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECCCCC
Q 009672 307 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQ 385 (529)
Q Consensus 307 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 385 (529)
|++++|.+....+ ..+++|+.|++++|.++...+..++.+++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999998876544 3468899999999999888777788899999999999999887776665 78999999999999
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC-hhHH
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTL 464 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~ 464 (529)
++.. .....+++|+.|++++|.+++.++. +..+++|+.|++++|.++.. +..+..+++|+.|++++| .+. ...+
T Consensus 181 l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~c~~~~ 255 (487)
T 3oja_A 181 IYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLR 255 (487)
T ss_dssp CCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CBCHHHHH
T ss_pred cccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC-CCcCcchH
Confidence 9875 2344688999999999999987654 78899999999999999874 556778899999999999 555 5677
Q ss_pred HHHhCCCCCCeeecc
Q 009672 465 ELISGLTGLVSLNVS 479 (529)
Q Consensus 465 ~~l~~l~~L~~L~l~ 479 (529)
..+..++.|+.++++
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 788888888888886
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.8e-21 Score=182.70 Aligned_cols=252 Identities=18% Similarity=0.218 Sum_probs=196.0
Q ss_pred eEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH----HhhcCCC-CCCEEECCCCCCChhhhhhhcCC-----CC
Q 009672 258 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----VHLKGLT-NLESLNLDSCGIGDEGLVNLTGL-----CN 327 (529)
Q Consensus 258 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 327 (529)
++.++.+.+++..+..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.++...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888777777777779999999999877655 6677888 99999999998887666665553 89
Q ss_pred CCeEEcCCCccChhhhhh----ccCC-CCCCeEeccCCCCChhhhhhhc----C-CCCCcEEECCCCCCCHHHH----HH
Q 009672 328 LKCLELSDTQVGSSGLRH----LSGL-TNLESINLSFTGISDGSLRKLA----G-LSSLKSLNLDARQITDTGL----AA 393 (529)
Q Consensus 328 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~----~~ 393 (529)
|+.|++++|.++...+.. +..+ ++|+.|++++|.+++.....+. . +++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988765543 4445 8999999999998876665443 3 4699999999999985433 44
Q ss_pred HhcCC-CCCEEecCCCCCChHHHHh----hhcC-CCCcEEEccCCCCChhhhh----hccC-CCCCCeEecCCCCCCChh
Q 009672 394 LTSLT-GLTHLDLFGARITDSGAAY----LRNF-KNLRSLEICGGGLTDAGVK----HIKD-LSSLTLLNLSQNCNLTDK 462 (529)
Q Consensus 394 l~~~~-~L~~L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~----~~~~-~~~L~~L~l~~~~~l~~~ 462 (529)
+...+ +|+.|++++|.+++.++.. +..+ ++|++|++++|.+++.+.. .+.. .++|++|++++| .+++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGP 240 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcH
Confidence 45555 9999999999998766543 3455 5999999999999885444 3443 469999999999 78775
Q ss_pred HHH----HHhCCCCCCeeeccCCccChhHH-------HhccCCCCCcEEeecCccCChh
Q 009672 463 TLE----LISGLTGLVSLNVSNSRITSAGL-------RHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 463 ~~~----~l~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
.+. .+..+++|+.|++++|.+..... ..+..+++|+.|++++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 543 34567999999999998433222 3456788999999999998865
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=9e-21 Score=192.29 Aligned_cols=224 Identities=21% Similarity=0.136 Sum_probs=117.9
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
++|++|++++|.+..... .+++|++|++++|.+..... .+++|+.|++++|.+.. .+. .+++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEEC
Confidence 566666666666553211 45566666666665554322 34556666666665543 111 2356666666
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
++|.+.... ..+++|+.|++++|.++... ..+++|+.|++++|.+..... ..++|+.|++++|.+...
T Consensus 149 s~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 149 SDNQLASLP----ALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL 216 (622)
T ss_dssp CSSCCSCCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC
T ss_pred cCCcCCCcC----CccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc
Confidence 666554321 12345666666666555432 334556666666665554221 234566666666655543
Q ss_pred HHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhC
Q 009672 390 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 469 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 469 (529)
+ ..+++|+.|++++|.++..+ ..+++|+.|++++|.++.... .+++|++|++++| .++. +|..+..
T Consensus 217 ~----~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N-~L~~-lp~~l~~ 282 (622)
T 3g06_A 217 P----ALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN-QLTR-LPESLIH 282 (622)
T ss_dssp C----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCCS-CCGGGGG
T ss_pred C----CCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC-CCCc-CCHHHhh
Confidence 1 12355666666666555532 344566666666665554322 3455666666666 4553 3444555
Q ss_pred CCCCCeeeccCCccChhHHHhc
Q 009672 470 LTGLVSLNVSNSRITSAGLRHL 491 (529)
Q Consensus 470 l~~L~~L~l~~~~~~~~~~~~~ 491 (529)
+++|+.|++++|++.+..+..+
T Consensus 283 l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHHHH
T ss_pred ccccCEEEecCCCCCCcCHHHH
Confidence 6666666666666665555433
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.8e-20 Score=190.06 Aligned_cols=269 Identities=20% Similarity=0.102 Sum_probs=212.6
Q ss_pred CCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchh
Q 009672 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVI 209 (529)
Q Consensus 130 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 209 (529)
..++++|+++++. +...+..+. ++|+.|++++| .+.... . .+++|++|++++|.++.... .
T Consensus 39 ~~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N-~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~------- 99 (622)
T 3g06_A 39 NNGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLP-A---LPPELRTLEVSGNQLTSLPV----L------- 99 (622)
T ss_dssp HHCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSC-CCSCCC-C---CCTTCCEEEECSCCCSCCCC----C-------
T ss_pred CCCCcEEEecCCC-cCccChhhC--CCCcEEEecCC-CCCCCC-C---cCCCCCEEEcCCCcCCcCCC----C-------
Confidence 3469999999975 444444443 89999999995 455322 2 57899999999999875322 2
Q ss_pred hhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCC
Q 009672 210 FILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 289 (529)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 289 (529)
+++|++|++++|.+..... .+++|+.|++++|.++.... .+++|++|++++|.
T Consensus 100 -------------------l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 100 -------------------PPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQ 152 (622)
T ss_dssp -------------------CTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC
T ss_pred -------------------CCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCc
Confidence 2899999999998876432 57899999999999876432 35899999999998
Q ss_pred CChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhh
Q 009672 290 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 369 (529)
Q Consensus 290 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 369 (529)
+... + ...++|+.|++.+|.+.... ..+++|+.|++++|.++... ...++|+.|++++|.+.....
T Consensus 153 l~~l-~---~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~~-- 218 (622)
T 3g06_A 153 LASL-P---ALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPA-- 218 (622)
T ss_dssp CSCC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC--
T ss_pred CCCc-C---CccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccCC--
Confidence 8742 2 24679999999999887643 45789999999999987532 235799999999998886432
Q ss_pred hcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCC
Q 009672 370 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449 (529)
Q Consensus 370 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 449 (529)
.+++|+.|++++|.++..+ ..+++|+.|++++|.++..+. .+++|+.|++++|.++.. +..+.++++|+
T Consensus 219 --~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~ 287 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSET 287 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTC
T ss_pred --CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccC
Confidence 3478999999999998753 567899999999999987644 678999999999999955 66788999999
Q ss_pred eEecCCCCCCChhHHHHHhCC
Q 009672 450 LLNLSQNCNLTDKTLELISGL 470 (529)
Q Consensus 450 ~L~l~~~~~l~~~~~~~l~~l 470 (529)
.|++++| .++...+..+..+
T Consensus 288 ~L~L~~N-~l~~~~~~~l~~L 307 (622)
T 3g06_A 288 TVNLEGN-PLSERTLQALREI 307 (622)
T ss_dssp EEECCSC-CCCHHHHHHHHHH
T ss_pred EEEecCC-CCCCcCHHHHHhc
Confidence 9999999 7888888877643
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.6e-21 Score=177.57 Aligned_cols=201 Identities=19% Similarity=0.214 Sum_probs=129.3
Q ss_pred CccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEecc
Q 009672 279 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 358 (529)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 358 (529)
..++++++++.++. .|..+ .++++.|+++++.+.......+..+++|++|++++|.++......+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46677777776663 23222 2567777777777766555566777777777777777665555555667777777777
Q ss_pred CCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhh
Q 009672 359 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 438 (529)
Q Consensus 359 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 438 (529)
+|.+.......+..+++|++|++++|.+....+..++.+++|+.|++++|.++..++..+..+++|++|++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77766655555666667777777776666654455566666666666666666655555566666666666666666655
Q ss_pred hhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCcc
Q 009672 439 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483 (529)
Q Consensus 439 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (529)
+..+..+++|++|++++| .++...+..+..+++|+.|++++|++
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 555666666666666666 55554444555566666666666654
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.1e-21 Score=180.83 Aligned_cols=205 Identities=24% Similarity=0.249 Sum_probs=130.4
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 36777777777776555556667777777777777776655556677777777777777776665566667777777777
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHH-HHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc----EEEccCC
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR----SLEICGG 432 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~L~l~~~ 432 (529)
++|.+.......+..+++|++|++++|.+.... +..++.+++|+.|++++|+++...+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 777766655555666677777777777665532 44556666677777766666655444444444444 5666666
Q ss_pred CCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 433 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++...+..+. ..+|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccC-CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence 66655443333 235666666666 555544444555666666666666554
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=6.7e-21 Score=174.84 Aligned_cols=201 Identities=18% Similarity=0.219 Sum_probs=148.9
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
...+.++++++.++..+ ..+ .++++.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIP-SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccC-CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35677788777776532 222 246788888888777655556777888888888888777665556677788888888
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChH
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 413 (529)
++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......++.+++|+.|++++|.++..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 88877766666667778888888888877776666677778888888888877776555567778888888888887777
Q ss_pred HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 414 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.+..+.++++|++|++++|.++......+..+++|+.|++++|+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 66667778888888888888777666667777888888888874
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=3.8e-21 Score=177.30 Aligned_cols=202 Identities=23% Similarity=0.198 Sum_probs=131.0
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777776655556666777777777777666544445666777777777777666655566666777777777
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhh-hhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCC----EEecCCC
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT----HLDLFGA 408 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~ 408 (529)
++|.+.......++.+++|+.|++++|.+.... +..+..+++|++|++++|.++...+..+..+++|+ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 777666555545666777777777777666532 45566677777777777776654333333333333 6777777
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
.++...+..+. ..+|++|++++|.++......+..+++|++|++++|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 77665444332 336777777777776665555666777777777776
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=1.8e-20 Score=172.12 Aligned_cols=187 Identities=22% Similarity=0.206 Sum_probs=109.1
Q ss_pred cCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcE
Q 009672 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378 (529)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 378 (529)
..+++|+.|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 3344444444444443321 23344455555555555444444444455555555555555555444444555566666
Q ss_pred EECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCC
Q 009672 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458 (529)
Q Consensus 379 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 458 (529)
|++++|.+....+..++.+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++| .
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 216 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-P 216 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC-C
Confidence 666666665544444556666777777777666665555666777777777777777665656667777777777777 3
Q ss_pred CChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCC
Q 009672 459 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 495 (529)
Q Consensus 459 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 495 (529)
+. +.++.|+.|+++.|.+.+..+..++.++
T Consensus 217 ~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 217 WD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp BC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 33 2356777777777777766555544443
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2.2e-19 Score=167.79 Aligned_cols=193 Identities=28% Similarity=0.386 Sum_probs=144.2
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeE
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (529)
.+++|++|+++++.+... + .+..+++|+.|++++|.+..... +..+++|+.|++++|.+... ..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 456888888888877642 2 46778888888888887776444 77788888888888887654 346777888888
Q ss_pred eccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCC
Q 009672 356 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 435 (529)
Q Consensus 356 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 435 (529)
++++|.+.... .+..+++|+.|++++|.+....+ ++.+++|+.|++++|.+++..+ +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 88888877643 36777888888888888776533 6777888888888887777544 677788888888888877
Q ss_pred hhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 436 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 436 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+..+ +..+++|++|++++| .++...+ +..+++|+.|++++|++..
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTS-CCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCC-ccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6543 667778888888888 6666543 6777888888888887765
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=174.51 Aligned_cols=203 Identities=17% Similarity=0.121 Sum_probs=140.0
Q ss_pred CCCCEEECCCCCCChhhhhhh--cCCCCCCeEEcCCCccChhh----hhhccCCCCCCeEeccCCCCChhhhhhhcCCCC
Q 009672 302 TNLESLNLDSCGIGDEGLVNL--TGLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 375 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 375 (529)
++|++|++++|.+....+..+ ..+++|+.|++++|.++... ...+..+++|+.|++++|.+....+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 456666666665554444444 55667777777776665421 123346777888888888777766667777788
Q ss_pred CcEEECCCCCCCHHHH----HHHhcCCCCCEEecCCCCCChHHHH---hhhcCCCCcEEEccCCCCChhhhhhccCC---
Q 009672 376 LKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA---YLRNFKNLRSLEICGGGLTDAGVKHIKDL--- 445 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--- 445 (529)
|++|++++|.+..... ..++.+++|++|++++|+++..+.. .+..+++|++|++++|.+++..+..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 8888888887765311 1124677888888888888754322 34678888888888888887766555555
Q ss_pred CCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCChh
Q 009672 446 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 446 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
++|++|++++| .++. +|..+ .++|+.|++++|++++.. .+..+++|+.|++++|+++..
T Consensus 251 ~~L~~L~Ls~N-~l~~-lp~~~--~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 251 SALNSLNLSFA-GLEQ-VPKGL--PAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TTCCCEECCSS-CCCS-CCSCC--CSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSSTTTSCC
T ss_pred CcCCEEECCCC-CCCc-hhhhh--cCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCCCCCCC
Confidence 68889999888 6774 34333 378999999999888642 256788899999999988753
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=3.2e-20 Score=170.48 Aligned_cols=200 Identities=21% Similarity=0.203 Sum_probs=166.0
Q ss_pred hcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCc
Q 009672 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 377 (529)
...+++|+.|.+.++.+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 33467888888888876542 3467789999999999988764 4678889999999999999887777788899999
Q ss_pred EEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 378 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
+|++++|.+....+..++.+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N- 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN- 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-
Confidence 9999999998776666788899999999999998887777888999999999999998877777788899999999999
Q ss_pred CCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCCh
Q 009672 458 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 458 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 509 (529)
.++...+..+..+++|+.|++++|++.. .+++|+.++++.|.++.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 7888777778889999999999998763 46778888888876654
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.81 E-value=5.4e-20 Score=170.11 Aligned_cols=203 Identities=21% Similarity=0.166 Sum_probs=132.8
Q ss_pred hhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCC
Q 009672 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353 (529)
Q Consensus 274 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (529)
+..++++++++++++.++. .|..+ .++++.|++++|.+....+..+..+++|+.|++++|.++.... .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3456778888887777763 23222 3677888888887776666677777888888888777765432 25667777
Q ss_pred eEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCC
Q 009672 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433 (529)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 433 (529)
.|++++|.+... +..+..+++|+.|++++|.++...+..+..+++|+.|++++|+++...+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 777777776643 3345566677777777777766544556666677777777777666655556666777777777776
Q ss_pred CChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 434 l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
++......+..+++|++|++++| .++. +|..+..+++|+.|++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQEN-SLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCC-cCCc-cChhhcccccCCeEEeCCCCcc
Confidence 66655555566667777777776 5553 3344445566666666666654
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=7.5e-19 Score=164.17 Aligned_cols=194 Identities=28% Similarity=0.397 Sum_probs=157.6
Q ss_pred hcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCe
Q 009672 251 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 330 (529)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (529)
..+++|+.|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3567899999999888764 257788899999999998876444 78889999999999987764 35778899999
Q ss_pred EEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCC
Q 009672 331 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 410 (529)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 410 (529)
|++++|.+.... .+..+++|+.|++++|.+..... +..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999999887653 37888999999999998877544 7788899999999998887543 78889999999999988
Q ss_pred ChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
++..+ +..+++|++|++++|.+++.. .+..+++|++|++++| .++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eeec
Confidence 87654 778899999999999988765 3778899999999998 4544
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=2.7e-20 Score=167.59 Aligned_cols=197 Identities=17% Similarity=0.177 Sum_probs=124.3
Q ss_pred CCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCc-cChhhhhhccCCCCCCeEeccC-CCCChhhhhhhcCCCCCcEEE
Q 009672 303 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 380 (529)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 380 (529)
+++.|+++++.+.......+..+++|+.|++++|. ++......+..+++|+.|++++ |.+.......+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 5444444455556666666665 555555555555666666666
Q ss_pred CCCCCCCHHHHHHHhcCCCCC---EEecCCC-CCChHHHHhhhcCCCCc-EEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 381 LDARQITDTGLAALTSLTGLT---HLDLFGA-RITDSGAAYLRNFKNLR-SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 381 l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
+++|.+...+ . +..+++|+ .|++++| .++...+..+.++++|+ +|++++|+++......+.. ++|++|++++
T Consensus 112 l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 6666665532 1 55566666 7777777 77766666677777777 7888777777554444544 6788888887
Q ss_pred CCCCChhHHHHHhCC-CCCCeeeccCCccChhHHHhccCCCCCcEEeecCc
Q 009672 456 NCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 505 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 505 (529)
|+.++...+..+..+ ++|+.|++++|++...... .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 744666656667777 7888888888877754332 5677778887776
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=9.8e-20 Score=170.70 Aligned_cols=230 Identities=16% Similarity=0.087 Sum_probs=139.2
Q ss_pred CCccEEEccCCCCCHHHHHH---hhcCCCCCeEecCCCcCChhhhHhh--hcCCCccEEEccCCCCChHHHHhhcCCCCC
Q 009672 230 QKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGLTNL 304 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 304 (529)
..++.+.+.++.+....... +..+++|++|++++|.+....+..+ ..+++|++|++++|.+.+..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--------- 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--------- 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence 45677777777665432221 1223556666666666655444444 455566666666655543111
Q ss_pred CEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhh----hhhhcCCCCCcEEE
Q 009672 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLN 380 (529)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~ 380 (529)
......+..+++|++|++++|.+....+..++.+++|+.|++++|.+.... ...+..+++|++|+
T Consensus 135 -----------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 135 -----------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp -----------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred -----------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 001122234455555555555554444444555556666666666544311 11224567777777
Q ss_pred CCCCCCCHHHHH---HHhcCCCCCEEecCCCCCChHHHHhhhcC---CCCcEEEccCCCCChhhhhhccCCCCCCeEecC
Q 009672 381 LDARQITDTGLA---ALTSLTGLTHLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 454 (529)
Q Consensus 381 l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~l~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 454 (529)
+++|.++..... .++.+++|+.|++++|.+++..+..+..+ ++|++|++++|.++.. +..+. ++|++|+++
T Consensus 204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLS 280 (310)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECC
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECC
Confidence 777777643221 34677888888888888887655455454 6899999999988854 44443 789999999
Q ss_pred CCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 455 QNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 455 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+| .++.. +. +..+++|+.|++++|++++
T Consensus 281 ~N-~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SN-RLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SC-CCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CC-cCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99 77764 22 5678999999999998875
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.8e-19 Score=166.61 Aligned_cols=201 Identities=24% Similarity=0.229 Sum_probs=171.8
Q ss_pred hhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCC
Q 009672 250 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 329 (529)
Q Consensus 250 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 329 (529)
+.++++++.++++++.++..+. .+ .+.++.|++++|.+....+..+..+++|+.|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 4567899999999998876442 22 3689999999999987777789999999999999998876443 26789999
Q ss_pred eEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCC
Q 009672 330 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 409 (529)
Q Consensus 330 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 409 (529)
.|++++|.+... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999998744 4456788999999999999998777889999999999999999998766777889999999999999
Q ss_pred CChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 410 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 410 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
++..++..+..+++|+.|++++|.++.. +..+...++|+.|++++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 9988877888999999999999999865 4556667899999999995
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=3.5e-19 Score=161.50 Aligned_cols=180 Identities=19% Similarity=0.264 Sum_probs=114.2
Q ss_pred CCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEEC
Q 009672 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 381 (529)
...+.++..++.+.... ..+ .+.++.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35566777766655422 222 246777777777776665556666777777777777766655555666667777777
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++| .++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCc
Confidence 777666654455566666666666666666655555566666666666666666655555666666666666666 5555
Q ss_pred hHHHHHhCCCCCCeeeccCCccCh
Q 009672 462 KTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 462 ~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
..+..+..+++|+.|++++|++..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 555555666666666666666544
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=2.8e-19 Score=160.94 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCCeEecCCCcCChhhhHhhhcCCCccEEEccCCC-CChHHHHhhcCCCCCCEEECCC-CCCChhhhhhhcCCCCCCeEE
Q 009672 255 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLE 332 (529)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 332 (529)
+|+.|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++ +.+....+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 33444444444333333333334444444444443 3322222344444444444444 444433333344444444444
Q ss_pred cCCCccChhhhhhccCCCCCC---eEeccCC-CCChhhhhhhcCCCCCc-EEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 333 LSDTQVGSSGLRHLSGLTNLE---SINLSFT-GISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
+++|.+.... . +..+++|+ .+++++| .+.......+..+++|+ .|++++|.+...+...+.. ++|+.|++++
T Consensus 112 l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 4444443321 1 33334444 5555554 44444333444444455 5555444444322222222 3444444444
Q ss_pred CC-CChHHHHhhhcC-CCCcEEEccCCCCC
Q 009672 408 AR-ITDSGAAYLRNF-KNLRSLEICGGGLT 435 (529)
Q Consensus 408 ~~-l~~~~~~~~~~~-~~L~~L~l~~~~l~ 435 (529)
|+ ++..++..+..+ ++|++|++++|.++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 42 444333344444 44444444444444
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.9e-18 Score=156.58 Aligned_cols=180 Identities=20% Similarity=0.247 Sum_probs=147.8
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
...++++++++.+.. .|..+ .++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 356788888887763 33333 368899999999888777777888899999999999888777777888899999999
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 437 (529)
++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99988887777788889999999999988877666677888999999999998888777788889999999999998887
Q ss_pred hhhhccCCCCCCeEecCCCCCCCh
Q 009672 438 GVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
.+..+..+++|++|++++| .+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N-~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN-QFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC-CBCT
T ss_pred CHHHHhCCCCCCEEEeeCC-ceeC
Confidence 7777888899999999998 4443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=3.4e-17 Score=151.49 Aligned_cols=172 Identities=26% Similarity=0.317 Sum_probs=121.5
Q ss_pred cCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcE
Q 009672 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378 (529)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 378 (529)
..+++|+.|++.++.+... ..+..+++|+.|++++|.++...+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3467788888888876653 346677888888888887766543 67777888888888877663 23667777888
Q ss_pred EECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCC
Q 009672 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458 (529)
Q Consensus 379 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 458 (529)
|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+ +..+++|++|++++| .
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-c
Confidence 88877777763 3566777777777777777765 356677777777777777776544 666777777777777 6
Q ss_pred CChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 459 LTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 459 l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+++.. .+..+++|+.|++++|++..
T Consensus 190 i~~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCh--hhccCCCCCEEECcCCcccC
Confidence 66542 36667777777777777665
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.9e-16 Score=146.44 Aligned_cols=172 Identities=28% Similarity=0.365 Sum_probs=129.8
Q ss_pred hcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCe
Q 009672 275 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 354 (529)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 354 (529)
..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3566788888888877643 236678888888888887776443 77788888888888887664 33677888888
Q ss_pred EeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 009672 355 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 434 (529)
Q Consensus 355 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l 434 (529)
|++++|.+.+. ..+..+++|+.|++++|.+... ..++.+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 88888887764 4567778888888888888774 467788888888888888877655 77788888888888888
Q ss_pred ChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 435 TDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 435 ~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
++. ..+..+++|+.|++++| .++.
T Consensus 191 ~~l--~~l~~l~~L~~L~l~~n-~i~~ 214 (291)
T 1h6t_A 191 SDL--RALAGLKNLDVLELFSQ-ECLN 214 (291)
T ss_dssp CBC--GGGTTCTTCSEEEEEEE-EEEC
T ss_pred CCC--hhhccCCCCCEEECcCC-cccC
Confidence 765 24777888888888888 4443
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=4.9e-17 Score=141.31 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=98.7
Q ss_pred CCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEE
Q 009672 349 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 428 (529)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 428 (529)
+++|+.|++++|.+.+.. .+..+++|++|++++|.+... ..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345555566555555322 355556666666666655442 3455667777777777777665555666777777777
Q ss_pred ccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCccCC
Q 009672 429 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 429 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 508 (529)
+++|.+++..+..+..+++|++|++++|..+++.. .+..+++|+.|++++|.+.+.. .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 77777776666667777777777777773255542 4677778888888888777643 5677788888888888765
Q ss_pred h
Q 009672 509 A 509 (529)
Q Consensus 509 ~ 509 (529)
.
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 98
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2e-17 Score=156.32 Aligned_cols=282 Identities=16% Similarity=0.103 Sum_probs=150.6
Q ss_pred CCccEEEccCCCCCHHHHHHhhc-CCCCCeEecCCCcCC--hhhhHhhhcCCCccEEEccCCCCChHHHHhhcC------
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG------ 300 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------ 300 (529)
++++.|.+++. +.......+.. +++|+.|++++|.+. ..... ..+.+..+.+..+.+. ...|..
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccc
Confidence 56777888764 23333344555 788999999888776 21111 1122333444444332 234566
Q ss_pred --CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCC----CCChhhhhhhcCCC
Q 009672 301 --LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT----GISDGSLRKLAGLS 374 (529)
Q Consensus 301 --~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~----~~~~~~~~~l~~~~ 374 (529)
+++|+.+.+.+ .+..+...+|..|++|+.+++..+.+.......+..+.++..+..... .........+.++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88888888887 677777777888888888888888777666667777666666655442 11222223344555
Q ss_pred CCc-EEECCCCCCCHHHHHHHh---cCCCCCEEecCCCCCChHHHHhh-hcCCCCcEEEccCCCCChhhhhhccCCCCCC
Q 009672 375 SLK-SLNLDARQITDTGLAALT---SLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 449 (529)
Q Consensus 375 ~L~-~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 449 (529)
.|+ .+.+..... .....+. ...+++.+.+.+. +.......+ ..|++|+++++++|+++.++..+|.++++|+
T Consensus 177 ~L~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCCCc--HHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 665 444432211 1111111 2234444444433 222111112 2355555555555555555555555555555
Q ss_pred eEecCCCCCCChhHHHHHhCCCCCC-eeeccCCccChhHHHhccCCCCCcEEeecCccCChhHHHHhhcCCCCCceecC
Q 009672 450 LLNLSQNCNLTDKTLELISGLTGLV-SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 527 (529)
Q Consensus 450 ~L~l~~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~ 527 (529)
+|++.+| ++.+...+|.+|++|+ .+++.+ .+......+|..|++|+.|++.+|.++..+...+. .+++|+.++
T Consensus 254 ~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~--~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG--NGVPSKLIY 327 (329)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC--TTCCCCEEE
T ss_pred EEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc--CCcchhhhc
Confidence 5555554 4444445555555555 555555 44444445555555555555555555554444444 455555543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.66 E-value=3.8e-17 Score=143.51 Aligned_cols=162 Identities=18% Similarity=0.171 Sum_probs=102.6
Q ss_pred CCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEec
Q 009672 326 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 405 (529)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 405 (529)
++++.|++++|.+.......+..+++|+.|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555555555555444444555566666666666555544444556666666666666666544444566667777777
Q ss_pred CCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 406 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
++|.++...+..+.++++|++|++++|.+++.....+..+++|++|++++| .+. +.++.|+.|+++.|.+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCc
Confidence 777776665555667777777777777777665555667777777777777 332 245677777777777777
Q ss_pred hHHHhccCCC
Q 009672 486 AGLRHLKPLK 495 (529)
Q Consensus 486 ~~~~~~~~~~ 495 (529)
..+..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6665555444
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1e-16 Score=162.52 Aligned_cols=174 Identities=26% Similarity=0.313 Sum_probs=130.1
Q ss_pred cCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcE
Q 009672 299 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 378 (529)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 378 (529)
..+++|+.|++.++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 4567788888888877653 246778888888888888776544 67788888888888877763 35777788888
Q ss_pred EECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCC
Q 009672 379 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 458 (529)
Q Consensus 379 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 458 (529)
|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++| .
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~ 186 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 186 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-C
Confidence 88888887763 4567788888888888877775 456778888888888888776644 677788888888888 6
Q ss_pred CChhHHHHHhCCCCCCeeeccCCccChhH
Q 009672 459 LTDKTLELISGLTGLVSLNVSNSRITSAG 487 (529)
Q Consensus 459 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 487 (529)
+++. ..+..+++|+.|++++|++....
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 6664 34677788888888888776543
No 101
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.3e-16 Score=150.68 Aligned_cols=219 Identities=14% Similarity=0.111 Sum_probs=137.6
Q ss_pred CCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCc----cChhhhhhccCCCCC
Q 009672 277 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ----VGSSGLRHLSGLTNL 352 (529)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~L 352 (529)
+++|+.+.+.. .+.......|..|++|+.+.+.++.+..+...+|..+.++..+...... ........+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77788887776 5555445567777888888887777666666667766666666554421 111112223445555
Q ss_pred C-eEeccCCCCChhhhhhhc---CCCCCcEEECCCCCCCHHHHHHHh-cCCCCCEEecCCCCCChHHHHhhhcCCCCcEE
Q 009672 353 E-SINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 427 (529)
Q Consensus 353 ~-~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 427 (529)
+ .+.+.... ......+. ...++..+.+.+. +.......+. .|++|+.+++++|.++..+..+|.+|.+|+++
T Consensus 179 ~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred ceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5 34443221 11111111 2345666666554 3232233333 47778888888777777777777778888888
Q ss_pred EccCCCCChhhhhhccCCCCCC-eEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEee
Q 009672 428 EICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 502 (529)
Q Consensus 428 ~l~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 502 (529)
++.+| +..++..+|.++++|+ .+++.++ ++.+...+|.+|++|+.|+++++.+......+|..|++|+.|+.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~--l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPAS--VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECTT--CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEccc--ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88776 6666677777777787 7777773 66666677777888888888777777777777777777777753
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=3.9e-16 Score=158.18 Aligned_cols=173 Identities=28% Similarity=0.361 Sum_probs=141.7
Q ss_pred hhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCC
Q 009672 274 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 353 (529)
Q Consensus 274 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (529)
+..++.|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 34667888999998887653 247788999999999998876544 77889999999999988764 3578889999
Q ss_pred eEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCC
Q 009672 354 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 433 (529)
Q Consensus 354 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 433 (529)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988864 4577889999999999988875 567888999999999999888766 7889999999999999
Q ss_pred CChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 434 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 434 l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
+++. ..+..+++|+.|++++| .+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 8875 45788899999999998 4544
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=4.2e-16 Score=135.40 Aligned_cols=151 Identities=23% Similarity=0.344 Sum_probs=71.6
Q ss_pred CCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEE
Q 009672 301 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 380 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 380 (529)
+++|+.|+++++.+.... .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..++.++
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~------ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLT------ 112 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCT------
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCC------
Confidence 345555555555544322 344455555555555543322 2344445555555555554443344444444
Q ss_pred CCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCC-CChhhhhhccCCCCCCeEecCCCCCC
Q 009672 381 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNL 459 (529)
Q Consensus 381 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~~l 459 (529)
+|+.|++++|.+++..+..+..+++|++|++++|. +++. + .+..+++|++|++++| .+
T Consensus 113 ------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n-~i 171 (197)
T 4ezg_A 113 ------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFD-GV 171 (197)
T ss_dssp ------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTB-CC
T ss_pred ------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCC-CC
Confidence 44555555444444444444445555555555554 3332 1 3444555555555555 44
Q ss_pred ChhHHHHHhCCCCCCeeeccCCccC
Q 009672 460 TDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 460 ~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
++.. .+..+++|+.|++++|++.
T Consensus 172 ~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCT--TGGGCSSCCEEEECBC---
T ss_pred cChH--HhccCCCCCEEEeeCcccC
Confidence 4422 3445555666666555543
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.5e-16 Score=139.62 Aligned_cols=171 Identities=18% Similarity=0.141 Sum_probs=137.0
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.++..++.++.... .-.++++.|++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 455555555443321 22468999999999988777777888999999999999998765566778899999999999
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHH
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 488 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 488 (529)
.++...+..+..+++|++|++++|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec---
Confidence 998877777788999999999999998876767888899999999999 7887666667889999999999997763
Q ss_pred HhccCCCCCcEEeecCccCChh
Q 009672 489 RHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 489 ~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
.+++|+.|+++.|+++..
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTT
T ss_pred ----CCCCHHHHHHHHHhCCce
Confidence 567888888888877643
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=1.4e-16 Score=140.88 Aligned_cols=151 Identities=19% Similarity=0.273 Sum_probs=86.5
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.++.+++.++..+.. + .++++.|++++|.+.......+..+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4455555554433211 1 145666666666666555555566666666666666666554455556666666666666
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCcc
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 483 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 483 (529)
.++..++..+..+++|++|++++|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666555555555666666666666666555555555666666666666 55554444555555666666666554
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.5e-16 Score=152.28 Aligned_cols=176 Identities=21% Similarity=0.237 Sum_probs=99.9
Q ss_pred CEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhcc-CCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCC
Q 009672 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383 (529)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 383 (529)
+.++..++.+..+. ..+ .+.++.|++++|.++......+. .+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666554422 111 23466666666666655555454 566666666666666665555566666666666666
Q ss_pred CCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhc---cCCCCCCeEecCCCCCCC
Q 009672 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 384 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~~l~ 460 (529)
|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++++|.++......+ ..+++|+.|++++| .++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence 66665544445566666666666666665555555666666666666666655444333 34555666666665 555
Q ss_pred hhHHHHHhCCCC--CCeeeccCCccC
Q 009672 461 DKTLELISGLTG--LVSLNVSNSRIT 484 (529)
Q Consensus 461 ~~~~~~l~~l~~--L~~L~l~~~~~~ 484 (529)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 554455555554 255555555543
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=3.1e-16 Score=149.41 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=68.2
Q ss_pred CceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcC-CCCccchhHHHHHhCCCCCCE
Q 009672 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR-RNNAITAQGMKAFAGLINLVK 135 (529)
Q Consensus 57 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~ 135 (529)
+++++|+|++|+++.....+|+.+++|++|+|++|...+......|.++++|+++... .|. ++...+..|..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhcccccc
Confidence 4566666666666655555566666666666666532233334455556555543332 233 44444555555666666
Q ss_pred EeccCccccccccccccCCCcCcEEeccCCcccCccccccccCC-CCCCeEEccCCCCCh
Q 009672 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTD 194 (529)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 194 (529)
|++++|.........+....++..+++.+++.+.......+..+ ..++.|++++|.++.
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 66655533222223333444455555554444444333334333 235555555555543
No 108
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=1e-15 Score=148.30 Aligned_cols=335 Identities=15% Similarity=0.103 Sum_probs=172.7
Q ss_pred ccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccc
Q 009672 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147 (529)
Q Consensus 68 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 147 (529)
.++.....+|..|.+|+.+.|.. .+..++..+|..|++|+.++++.+ ++......|..|.+|+.+.+... .....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeec
Confidence 46667778888999999999974 477888888999999999999765 44555667888888888877653 23333
Q ss_pred cccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhc
Q 009672 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLT 227 (529)
Q Consensus 148 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (529)
..+|..+..++...... .......++..|++|+.+.+..+ +...+...| .
T Consensus 133 ~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F--------------------------~ 182 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLF--------------------------S 182 (394)
T ss_dssp TTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT--------------------------T
T ss_pred ceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccc--------------------------c
Confidence 44555555444333332 22333456777778887777543 222222222 3
Q ss_pred ccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEE
Q 009672 228 SLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 307 (529)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 307 (529)
.+.+|+.+.+..+ +......+|.++..|+.+.+..+...- .+.......|+.+.+... ........+..+..++.+
T Consensus 183 ~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 183 GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL--GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESI 258 (394)
T ss_dssp TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEE
T ss_pred CCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe--ehhhcccCCCceEEECCC-ceecccccccccccceeE
Confidence 3366666666543 222223455566666666655432211 011122345555555322 111112234455555555
Q ss_pred ECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCC
Q 009672 308 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 387 (529)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 387 (529)
.+..+. ..+....+..+..++.+......+. ...+..+.+|+.+.+..+ +......+
T Consensus 259 ~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a------------------ 315 (394)
T 4fs7_A 259 SIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA------------------ 315 (394)
T ss_dssp EECCTT-CEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT------------------
T ss_pred EcCCCc-ceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhh------------------
Confidence 554432 2223334444455554444332211 122334444444444322 33333334
Q ss_pred HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHH
Q 009672 388 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 388 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 467 (529)
|..|.+|+.+++.. .++..+..+|.+|.+|+.+.+..+ ++..+..+|.+|++|+.+++..+ +... ...|
T Consensus 316 ------F~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-~~~F 384 (394)
T 4fs7_A 316 ------FESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQY-RYDF 384 (394)
T ss_dssp ------TTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-GGGB
T ss_pred ------hcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEh-hhee
Confidence 44455555555543 244444445555555555555443 44444555555555555555543 2222 2234
Q ss_pred hCCCCCCe
Q 009672 468 SGLTGLVS 475 (529)
Q Consensus 468 ~~l~~L~~ 475 (529)
.++++|+.
T Consensus 385 ~~c~~L~~ 392 (394)
T 4fs7_A 385 EDTTKFKW 392 (394)
T ss_dssp CTTCEEEE
T ss_pred cCCCCCcE
Confidence 44555544
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=2.4e-16 Score=139.25 Aligned_cols=152 Identities=19% Similarity=0.276 Sum_probs=86.9
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhh-hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
+.++++++.++..+. .+ .+.++.|++++|.+....+ ..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 456666665544321 11 2345666666666655422 3355566666666666666655444555666666666666
Q ss_pred CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 408 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666555555556666666666666666555555555666666666666 555555555555666666666666554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=1.3e-15 Score=145.63 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=141.9
Q ss_pred cEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhc-CCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccC
Q 009672 281 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 359 (529)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 359 (529)
++++.+++.+.. .|..+ .+.++.|++++|.++......+. .+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888877764 33322 35688999999988877776676 889999999999998887777788899999999999
Q ss_pred CCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhh---hcCCCCcEEEccCCCCCh
Q 009672 360 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD 436 (529)
Q Consensus 360 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~l~~ 436 (529)
|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++..+...+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99988777778888999999999999988767778888999999999999988766666 568899999999999988
Q ss_pred hhhhhccCCCC--CCeEecCCCC
Q 009672 437 AGVKHIKDLSS--LTLLNLSQNC 457 (529)
Q Consensus 437 ~~~~~~~~~~~--L~~L~l~~~~ 457 (529)
.....+..++. ++.|++++|+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 77777777776 4889999984
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=7.7e-16 Score=136.01 Aligned_cols=150 Identities=22% Similarity=0.239 Sum_probs=114.1
Q ss_pred CEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCC
Q 009672 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384 (529)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 384 (529)
+.++..++.++.+. ..+ .++++.|++++|.+....+..+..+++|+.|++++|.+....+..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP-~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCC-SSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCC-Ccc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666655432 222 257888888888887766667777888888888888888776777888888888888888
Q ss_pred CCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 385 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 385 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.++..+...+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|++|++++|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 8877655566778888888888888887777777788888888888888887766677778888888888884
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=8.4e-16 Score=136.76 Aligned_cols=152 Identities=24% Similarity=0.228 Sum_probs=76.7
Q ss_pred CCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 328 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
.+.++.+++.++.... .-.++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3455555554433321 1124556666666655554445555555555565555555544333444555555555555
Q ss_pred CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 408 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
|+++...+..+..+++|++|++++|.++.. +..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555554444445555555555555555432 333444555555555555 444443344444555555555555443
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=6.5e-16 Score=140.53 Aligned_cols=169 Identities=23% Similarity=0.293 Sum_probs=105.2
Q ss_pred CCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEEC
Q 009672 302 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 381 (529)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 381 (529)
.++..+.+.++.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34444555565554432 3456677777777777665442 45666777777777777766444 666777777777
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCCh
Q 009672 382 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
++|.+.... .+.. ++|+.|++++|++++.. .+..+++|++|++++|.+++.. .+..+++|++|++++| .+++
T Consensus 93 ~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N-~i~~ 164 (263)
T 1xeu_A 93 NRNRLKNLN--GIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN-EITN 164 (263)
T ss_dssp CSSCCSCCT--TCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS-CCCB
T ss_pred CCCccCCcC--cccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC-cCcc
Confidence 777766532 1223 66777777777666642 3566677777777777666542 4556667777777776 5555
Q ss_pred hHHHHHhCCCCCCeeeccCCccChh
Q 009672 462 KTLELISGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 462 ~~~~~l~~l~~L~~L~l~~~~~~~~ 486 (529)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 4455666677777776666543
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=1.6e-16 Score=151.45 Aligned_cols=239 Identities=16% Similarity=0.115 Sum_probs=132.1
Q ss_pred cEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHH-HhhcCCCCCCEE-ECC
Q 009672 233 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESL-NLD 310 (529)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L-~l~ 310 (529)
+.++.+++.++.. |..+ .++++.|++++|+++...+..|..+++|++|++++|.+.+..+ ..|.+++++.++ .+.
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3455555555432 2222 2456677777776665555556666677777777666543322 235566665543 334
Q ss_pred CCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccC-CCCChhhhhhhcCC-CCCcEEECCCCCCCH
Q 009672 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL-SSLKSLNLDARQITD 388 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 388 (529)
.+.+....+..|..+++|+.|++++|.+.......+.....+..+++.+ +.+.......+..+ ..++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 4556555555666667777777776666544433333344555566544 34544444444443 246667777776665
Q ss_pred HHHHHHhcCCCCCEEecCC-CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHH
Q 009672 389 TGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 467 (529)
Q Consensus 389 ~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 467 (529)
.....+ ...+|+++.+.+ |.++..+...|.++++|++|++++|+++...... +.+|+.|.+.++.+++... .+
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP--~l 242 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP--TL 242 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC--CT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC--Cc
Confidence 433222 334566666653 4566555556666777777777777766553333 3445555555544444332 25
Q ss_pred hCCCCCCeeeccC
Q 009672 468 SGLTGLVSLNVSN 480 (529)
Q Consensus 468 ~~l~~L~~L~l~~ 480 (529)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 5666777776654
No 115
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=9.6e-16 Score=148.56 Aligned_cols=336 Identities=15% Similarity=0.167 Sum_probs=200.9
Q ss_pred cCchhhhhccCCCCCCEEEcCCCCccchhHHHHHhCCCCCCEEeccCccccccccccccCCCcCcEEeccCCcccCcccc
Q 009672 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173 (529)
Q Consensus 94 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 173 (529)
+..++..+|..|++|+.+.++.+ ++.....+|.+|++|+.+.+.++ ....+..++..+..|+.+.+.. .+.....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecc
Confidence 55666777888888888888754 45555667778888888887653 2233445566677777666543 2333333
Q ss_pred ccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhhhcccCCccEEEccCCCCCHHHHHHhhcC
Q 009672 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVFLTSLQKLTLLNLEGCPVTAACLDSLSAL 253 (529)
Q Consensus 174 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 253 (529)
.++..+..++ ..+.. .....+... +..|++|+.+.+.... .......|.++
T Consensus 134 ~aF~~~~~~~-~~~~~-~~~~i~~~a--------------------------F~~c~~L~~i~l~~~~-~~I~~~~F~~c 184 (394)
T 4fs7_A 134 EAFKGCDFKE-ITIPE-GVTVIGDEA--------------------------FATCESLEYVSLPDSM-ETLHNGLFSGC 184 (394)
T ss_dssp TTTTTCCCSE-EECCT-TCCEECTTT--------------------------TTTCTTCCEEECCTTC-CEECTTTTTTC
T ss_pred eeeecccccc-cccCc-cccccchhh--------------------------hcccCCCcEEecCCcc-ceeccccccCC
Confidence 4444443222 11111 111111111 2333555555554321 11122334444
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
.+|+.+.+..+ +.......+..+..|+.+.+..+... .. ........|+.+.+
T Consensus 185 ~~L~~i~l~~~-------------------------~~~I~~~~F~~~~~L~~i~~~~~~~~-i~-~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 185 GKLKSIKLPRN-------------------------LKIIRDYCFAECILLENMEFPNSLYY-LG-DFALSKTGVKNIII 237 (394)
T ss_dssp TTCCBCCCCTT-------------------------CCEECTTTTTTCTTCCBCCCCTTCCE-EC-TTTTTTCCCCEEEE
T ss_pred CCceEEEcCCC-------------------------ceEeCchhhccccccceeecCCCceE-ee-hhhcccCCCceEEE
Confidence 45554444332 11111223445555555555443211 11 11223456666666
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChH
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 413 (529)
... +.......+..+..++.+.+..+ ........+..+..++.+......+.. ..+..+.+|+.+.+..+ ++..
T Consensus 238 p~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 238 PDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEE
T ss_pred CCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeecc---ccccccccccccccccc-ccee
Confidence 433 22233344556677777777654 233344566677888887776654433 35668889999998764 6667
Q ss_pred HHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccC
Q 009672 414 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493 (529)
Q Consensus 414 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 493 (529)
+..+|.+|.+|+.+++.. .++.++..+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ +... ..+|..
T Consensus 312 ~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~ 386 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFED 386 (394)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCT
T ss_pred chhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecC
Confidence 777899999999999974 477788889999999999999876 77777788999999999999765 3222 357889
Q ss_pred CCCCcEEe
Q 009672 494 LKNLRSLT 501 (529)
Q Consensus 494 ~~~L~~L~ 501 (529)
|++|+.+.
T Consensus 387 c~~L~~IK 394 (394)
T 4fs7_A 387 TTKFKWIK 394 (394)
T ss_dssp TCEEEEEC
T ss_pred CCCCcEEC
Confidence 99998763
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=134.43 Aligned_cols=149 Identities=20% Similarity=0.228 Sum_probs=105.8
Q ss_pred CEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhh-hhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCC
Q 009672 305 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383 (529)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 383 (529)
+.++++++.++.+ +..+ .+.++.|++++|.++...+ ..+..+++|+.|++++|.+.......+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4677777766543 2222 2456777777777766532 3456777778888877777776666677777788888877
Q ss_pred CCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 384 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 7777765566777777888888877777776667777777888888777777776667777777888888777
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=2.6e-15 Score=144.60 Aligned_cols=264 Identities=14% Similarity=0.134 Sum_probs=201.6
Q ss_pred CCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEEC
Q 009672 230 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 309 (529)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 309 (529)
..++.+.+... +......+|.++ +|+.+.+..+ +......+|.. .+|+.+.+.. .+.......|..|++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 67777777653 333344566665 7999998765 55545556665 4699999875 454444556888999999999
Q ss_pred CCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHH
Q 009672 310 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 389 (529)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 389 (529)
..+.+..+....|. +.+|+.+.+..+ +.......+..|++|+.+.+..+ +......+|.+ .+|+.+.+. +.+...
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 98888877666776 589999998754 66666777888999999999864 66666677777 689999984 556665
Q ss_pred HHHHHhcCCCCCEEecCCCCCC-----hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHH
Q 009672 390 GLAALTSLTGLTHLDLFGARIT-----DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 464 (529)
Q Consensus 390 ~~~~l~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 464 (529)
+...|..|++|+.+.+.++.+. ..+..+|.+|++|+.+.+. +.+...+..+|.+|++|+.+.|.++ ++.+..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~ 339 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINF 339 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcH
Confidence 5677889999999999887654 4567788999999999998 4588888888999999999999775 777777
Q ss_pred HHHhCCCCCCeeeccCCccChhHHHhccCCC-CCcEEeecCccC
Q 009672 465 ELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKV 507 (529)
Q Consensus 465 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 507 (529)
.+|.++ +|+.+.+++|.........|..++ .++.|.+..+.+
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 788888 999999999987766666777774 788999887743
No 118
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=2.5e-14 Score=136.43 Aligned_cols=185 Identities=22% Similarity=0.280 Sum_probs=136.8
Q ss_pred CCCCCeEEcCCCccChhhhhhcc-----CCCCCCeEeccCCCCChhhhhhhc-CCCCCcEEECCCCCCCHHHHHHHh---
Q 009672 325 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT--- 395 (529)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~--- 395 (529)
.+.|+.|++++|.++......+. .+++|+.|++++|.+++.....+. .+++|+.|++++|.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999998876554433 236899999999999876655543 356899999999999887666553
Q ss_pred --cCCCCCEEecCCCCCChHHHHh----hhcCCCCcEEEccCCCCChhhh----hhccCCCCCCeEecCCCCCCChhHHH
Q 009672 396 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTLE 465 (529)
Q Consensus 396 --~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~ 465 (529)
..++|+.|++++|.+++.+... +..+++|++|++++|.+++.+. ..+...++|++|++++| .+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 4678999999999988755443 3678899999999999988764 34566788999999999 78875443
Q ss_pred ----HHhCCCCCCeeeccCCccChhHHHhccCC---C--CCcEEe--ecCccCChh
Q 009672 466 ----LISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN 510 (529)
Q Consensus 466 ----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~~~~~ 510 (529)
.+..+++|+.|++++|++++.+...+... . .|+.+. +.++.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 44567899999999999988777665332 2 277777 777777655
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=8.7e-15 Score=146.63 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=138.5
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
.+++.|+++++.+.+ .|..+ .++|+.|++++|.+..+. ..+++|+.|++++|.++... . +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEEC
Confidence 489999999988875 44333 478999999999887533 45789999999999887643 2 443 8999999
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 437 (529)
++|.++.... .+++|+.|++++|.++..+. .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 9998877333 56889999999988876432 56788999999988887544 43 8899999999888754
Q ss_pred hhhhccCCCCC-------CeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccC
Q 009672 438 GVKHIKDLSSL-------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 493 (529)
Q Consensus 438 ~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 493 (529)
.. +.. +| +.|++++| .++. +|..+..+++|+.|++++|++++..+..+..
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--CC----------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 32 443 56 88888888 6775 4555666888888888888888877766544
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=6.9e-15 Score=147.36 Aligned_cols=189 Identities=21% Similarity=0.135 Sum_probs=150.7
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEc
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 333 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (529)
.+|+.|+++++.+... +..+ .++|++|++++|.+.. .| ..+++|+.|++++|.++.+ +. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 4899999999998863 3333 3789999999999984 44 5679999999999988773 33 443 9999999
Q ss_pred CCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChH
Q 009672 334 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 413 (529)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 413 (529)
++|.++.... .+++|+.|++++|.++.... .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 9999887432 67899999999999887433 56899999999999988533 54 8999999999999865
Q ss_pred HHHhhhcCCCC-------cEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 414 GAAYLRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 414 ~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
+. +.. +| +.|++++|.++.. +..+..+++|+.|++++| .++...|..+..++
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN-PLSSRIRESLSQQT 254 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS-SCCHHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC-cCCCcCHHHHHHhh
Confidence 44 432 66 9999999999975 555666999999999999 79988888877643
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=5.4e-15 Score=131.51 Aligned_cols=149 Identities=21% Similarity=0.168 Sum_probs=86.6
Q ss_pred CCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCC
Q 009672 304 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 383 (529)
Q Consensus 304 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 383 (529)
-+.++.+++.+..+.. . -.++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~-~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-G--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC-C--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3445555554443221 1 125666666666666655555556666666666666666555545555666666666666
Q ss_pred CCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 384 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 384 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
|.++...+..+..+++|+.|++++|.++.. +..+..+++|++|++++|.++......+..+++|+.|++++|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 666655444455666666666666666643 334456666666666666666554445556666666666666
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=1.2e-14 Score=140.01 Aligned_cols=219 Identities=10% Similarity=0.137 Sum_probs=107.0
Q ss_pred CccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCCEEECC
Q 009672 231 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 310 (529)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (529)
+|+.+.+.. .+......+|.+|++|+.+++.++.+.......|. +.+|+.+.+..+ +.......|..+++|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 455555553 33333333455555555555555544443333333 344555544422 222222334444444444444
Q ss_pred CCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCC---
Q 009672 311 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--- 387 (529)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--- 387 (529)
.+ +..+...+|. . .+|+.+.+. +.+......+|.+|++|+.+.+.++...
T Consensus 235 ~~-l~~I~~~aF~------------------------~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 235 EN-VSTIGQEAFR------------------------E-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTT------------------------T-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred CC-ccCccccccc------------------------c-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 32 2222333333 3 344444442 2333334444555555555555444332
Q ss_pred --HHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHH
Q 009672 388 --DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 465 (529)
Q Consensus 388 --~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 465 (529)
......|..|++|+.+.+.. .++..+..+|.+|.+|+.+.+.. .++..+..+|.++ +|+.+++.+| .+......
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~ 363 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEK 363 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCC-CCcccccc
Confidence 22234455666666666653 35555555666666666666643 3555555566666 6666666666 44444344
Q ss_pred HHhCCC-CCCeeeccCCcc
Q 009672 466 LISGLT-GLVSLNVSNSRI 483 (529)
Q Consensus 466 ~l~~l~-~L~~L~l~~~~~ 483 (529)
.|.+++ .++.|.+..+.+
T Consensus 364 ~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCCSCTTCCEEEECGGGH
T ss_pred cccCCCCCccEEEeCHHHH
Confidence 455553 566666665543
No 123
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=4.7e-14 Score=134.54 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=139.3
Q ss_pred CCCCCEEECCCCCCChhhhhhhcC-----CCCCCeEEcCCCccChhhhhhcc-CCCCCCeEeccCCCCChhhhhhhc---
Q 009672 301 LTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA--- 371 (529)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~--- 371 (529)
.+.|+.|++++|.++......+.. .++|+.|++++|.+++.....+. .+++|+.|++++|.+++.....++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999999888765554433 36999999999998876654443 457899999999999887666553
Q ss_pred --CCCCCcEEECCCCCCCHHHHHHH----hcCCCCCEEecCCCCCChHH----HHhhhcCCCCcEEEccCCCCChhhhhh
Q 009672 372 --GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 372 --~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~ 441 (529)
..++|++|++++|.+++.+...+ ..+++|+.|++++|.+++.+ ...+..+++|++|++++|.+++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 46789999999999987554444 57889999999999998766 445577889999999999999876654
Q ss_pred c----cCCCCCCeEecCCCCCCChhHHHHHhCCC--C---CCeee--ccCCccChh
Q 009672 442 I----KDLSSLTLLNLSQNCNLTDKTLELISGLT--G---LVSLN--VSNSRITSA 486 (529)
Q Consensus 442 ~----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~--~---L~~L~--l~~~~~~~~ 486 (529)
+ ...++|++|++++| .+++.....+..+. . |+.+. +.++.+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 4 45689999999999 78888777776532 2 77777 667766654
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=2.8e-15 Score=136.26 Aligned_cols=168 Identities=23% Similarity=0.332 Sum_probs=131.3
Q ss_pred CCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEec
Q 009672 278 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 357 (529)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (529)
.++..++++.+.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34556667777665432 3567789999999998877543 57788999999999998877654 788899999999
Q ss_pred cCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChh
Q 009672 358 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 437 (529)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 437 (529)
++|.+..... +.. ++|+.|++++|.++.. ..++.+++|+.|++++|++++.. .+..+++|++|++++|.+++.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 9998876432 333 7899999999988874 35778899999999999888863 577889999999999988876
Q ss_pred hhhhccCCCCCCeEecCCCCCCCh
Q 009672 438 GVKHIKDLSSLTLLNLSQNCNLTD 461 (529)
Q Consensus 438 ~~~~~~~~~~L~~L~l~~~~~l~~ 461 (529)
..+..+++|+.|++++| .+..
T Consensus 166 --~~l~~l~~L~~L~l~~N-~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQ-KCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEE-EEEC
T ss_pred --HHhccCCCCCEEeCCCC-cccC
Confidence 56778889999999998 4443
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=5.5e-16 Score=156.22 Aligned_cols=195 Identities=19% Similarity=0.172 Sum_probs=128.7
Q ss_pred CCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCC-------------CChhhhhhhcCCCCCcEEE-CCCCCCCHHH
Q 009672 325 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-------------ISDGSLRKLAGLSSLKSLN-LDARQITDTG 390 (529)
Q Consensus 325 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~ 390 (529)
++.|+.|++++|.+. ..+..++.+++|+.|+++++. .....+..++.+++|+.|+ ++.+.+....
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 445555555555443 223444445555555543331 2233444555666677766 4444333221
Q ss_pred HH-----HHh--cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhH
Q 009672 391 LA-----ALT--SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 463 (529)
Q Consensus 391 ~~-----~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 463 (529)
.. .+. ....|+.|++++|.++..+ . +..+++|+.|++++|.++.. |..+..+++|++|++++| .++..
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N-~l~~l- 501 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALENV- 501 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCC-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCC-CCCCC-
Confidence 10 111 1236889999999888764 2 78889999999999988844 667888899999999998 77763
Q ss_pred HHHHhCCCCCCeeeccCCccChhH-HHhccCCCCCcEEeecCccCChhH--HHHhhcCCCCCceecC
Q 009672 464 LELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTAND--IKRLQSRDLPNLVSFR 527 (529)
Q Consensus 464 ~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~~l~~l~ 527 (529)
| .+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|+++... ...+. ..+|+|+.|+
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~-~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-EMLPSVSSIL 566 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-HHCTTCSEEE
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH-HHCcccCccC
Confidence 4 7888999999999999988876 778888999999999999887542 22222 3477888775
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=8.1e-14 Score=114.99 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=23.1
Q ss_pred cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhh-hhhccCCCCCCeEecCCC
Q 009672 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 396 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~ 456 (529)
.+++|+.|++++|.+++..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 3333444444444333322333333444444444444443321 123333444444444444
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=1.7e-13 Score=113.00 Aligned_cols=128 Identities=24% Similarity=0.292 Sum_probs=90.6
Q ss_pred CCCCeEEcCCCccC-hhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEe
Q 009672 326 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 404 (529)
Q Consensus 326 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 404 (529)
++++.|++++|.+. ...+..+..+++|+.|++++|.+... ..++.+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 23334456667777777777777664 5566777888888888888774466666788888888
Q ss_pred cCCCCCChHH-HHhhhcCCCCcEEEccCCCCChhhh---hhccCCCCCCeEecCC
Q 009672 405 LFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 405 l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~ 455 (529)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888753 3567888888888888888776644 4566677777777653
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.7e-14 Score=121.80 Aligned_cols=110 Identities=26% Similarity=0.277 Sum_probs=51.1
Q ss_pred cCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhH-HHHHhCCCCCC
Q 009672 396 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLV 474 (529)
Q Consensus 396 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~ 474 (529)
.+++|+.|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|++|++++| .++... +..+..+++|+
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCC
T ss_pred hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCC
Confidence 334444444444444433 23344444555555554444433333333445555555555 344321 13444455555
Q ss_pred eeeccCCccChhHH---HhccCCCCCcEEeecCccCC
Q 009672 475 SLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 475 ~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 508 (529)
.|++++|++.+... ..+..+++|+.|++++|.+.
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555555544333 34455555555555555443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=6.3e-16 Score=155.76 Aligned_cols=208 Identities=18% Similarity=0.185 Sum_probs=135.0
Q ss_pred cCCCccEEEccCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeE
Q 009672 276 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 355 (529)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (529)
..++|+.|++++|.+. ..|..+..+++|+.|+++++......+... .. +......+..++.+++|+.|
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------~~-----~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM------RA-----LDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------HH-----HCTGGGHHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH------Hh-----cccccCCHHHHHHHHhcccC
Confidence 4556667777776664 456666667777777665442100000000 00 00122233344445555555
Q ss_pred e-ccCCCCChhh--------hhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcE
Q 009672 356 N-LSFTGISDGS--------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 426 (529)
Q Consensus 356 ~-l~~~~~~~~~--------~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 426 (529)
+ ++.+.+.+.. ...+. ...|+.|++++|.++..+ . ++.+++|+.|++++|.++.. |..+.++++|+.
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~ 490 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEV 490 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCE
T ss_pred cchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-chhhhcCCCCCE
Confidence 5 3332221111 11111 135888999998888753 3 78888999999999988854 557888999999
Q ss_pred EEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhH-HHHHhCCCCCCeeeccCCccChhHH---HhccCCCCCcEEee
Q 009672 427 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTL 502 (529)
Q Consensus 427 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 502 (529)
|++++|.+++. + .+..+++|++|++++| .++... |..+..+++|+.|++++|++.+..+ ..+..+++|+.|++
T Consensus 491 L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 491 LQASDNALENV-D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCCC-G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCC-c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999998875 3 7888899999999999 788776 7888899999999999999887543 22345788888864
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=6.4e-14 Score=118.21 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=72.5
Q ss_pred CCCeEeccCCCCC-hhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEc
Q 009672 351 NLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 429 (529)
Q Consensus 351 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 429 (529)
+|+.|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.++...+..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444443 11222233444555555555544443 33445555666666666555544444555666666666
Q ss_pred cCCCCChhhh-hhccCCCCCCeEecCCCCCCChhHH---HHHhCCCCCCeeeccCCccCh
Q 009672 430 CGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 430 ~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~~~ 485 (529)
++|.+++... ..+..+++|++|++++| .++...+ ..+..+++|+.|++++|....
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 6666665422 45666677777777776 4554433 466677777777777776543
No 131
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=8.2e-13 Score=127.90 Aligned_cols=335 Identities=16% Similarity=0.137 Sum_probs=179.8
Q ss_pred cCchhhhhccCCC-CCCeEeccCCcccCchhhhhccCCCCCCEEEcCCCC--ccchhHHHHHhCCCCCCEEeccCccccc
Q 009672 69 VTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRIH 145 (529)
Q Consensus 69 ~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 145 (529)
++.....+|.++. .|+.+.+.. .++.++..+|..|++|+.+.+..+. .++.....+|..|.+|+.+.+... ...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 4445566677764 588888874 4777777888888888888776531 234445566777788887777653 233
Q ss_pred cccccccCCCcCcEEeccCCcccCccccccccCCCCCCeEEccCCCCChhHHHHhhccCccchhhhhhhhHHHhhhhhhh
Q 009672 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLSISSVIFILCSMIIRLFCLHVF 225 (529)
Q Consensus 146 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (529)
....++..+.+|+.+.+.. .+.......+..+..|+.+.+..+ ++..+...|..
T Consensus 128 I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~----------------------- 181 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG----------------------- 181 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-----------------------
T ss_pred ehhhhhhhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccc-----------------------
Confidence 3445667778888888763 344444566777778887777543 33333222221
Q ss_pred hcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCC
Q 009672 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305 (529)
Q Consensus 226 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 305 (529)
.+|+.+.+..... .....+|..+..+..............-..+.......... ..+.....+.
T Consensus 182 ----~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 245 (394)
T 4gt6_A 182 ----TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDP 245 (394)
T ss_dssp ----CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCS
T ss_pred ----cceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccccccc-----------cccccccccc
Confidence 4566666654321 12234556666666666554332211100000000000000 0011222333
Q ss_pred EEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCC
Q 009672 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 385 (529)
Q Consensus 306 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 385 (529)
.+.+... +..+...+|..+..|+.+.+..+. .......+..+++|+.+.+. +.+......+|.+|.+|+.+.+..+
T Consensus 246 ~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 246 AFKIPNG-VARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp EEECCTT-EEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred eEEcCCc-ceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence 3333322 222333455566666666665432 22333445566667766664 3444555566667777777777543
Q ss_pred CCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 386 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 386 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
++..+...|..|.+|+.+.+..+ ++..+..+|.+|.+|+.+++.++... ..++..+.+|+.+.+..+
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 44444456667777777777653 55566667777788888777765321 234555677777776654
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=7.5e-14 Score=120.39 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=94.1
Q ss_pred CeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHH-HHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
+.++++++.+..... .+. .++++|++++|.+....+. .++.+++|+.|++++|+++...+..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678888887765432 222 3788888888887765432 366777888888888888777677777788888888888
Q ss_pred CCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 432 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
|.++...+..+.++++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 8887776666777778888888887 6777666677777778888887777663
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=1.8e-13 Score=116.27 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=48.1
Q ss_pred CCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHH-HHHhCCCCCCeee
Q 009672 399 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLN 477 (529)
Q Consensus 399 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~ 477 (529)
+|+.|++++|.+++. ..+..+++|++|++++|.++...+..+..+++|++|++++| .++.... ..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence 444444444444433 23344444555555555444432222344445555555555 3433221 1344455555555
Q ss_pred ccCCccChhHHH---hccCCCCCcEEeecCccCC
Q 009672 478 VSNSRITSAGLR---HLKPLKNLRSLTLESCKVT 508 (529)
Q Consensus 478 l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 508 (529)
+++|++...... .+..+++|+.|++++|...
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 555554432221 2445555555555555443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=4.9e-13 Score=113.79 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=72.5
Q ss_pred CCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 352 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
.+.++++++.+...... ..++|+.|++++|.+....+..++.+++|+.|++++|.++...+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45566666655543221 124566666666666554444455556666666666666655544455566666666666
Q ss_pred CCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccCh
Q 009672 432 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 432 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 485 (529)
|.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6665554444555566666666665 5554444444555556666666655543
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.6e-13 Score=116.91 Aligned_cols=127 Identities=22% Similarity=0.243 Sum_probs=87.2
Q ss_pred CeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCC
Q 009672 353 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 432 (529)
Q Consensus 353 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 432 (529)
+.++++++.+..... .+ .++|++|++++|.++..+ ..+..+++|+.|++++|.++...+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCC-CC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567777777665432 22 256777888777776542 56667777777777777777766666777777777777777
Q ss_pred CCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 433 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 433 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++...+..+.++++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 777766666777777777777777 666655555666777777777777654
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=1.9e-12 Score=125.34 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=84.5
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccC
Q 009672 365 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 444 (529)
Q Consensus 365 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 444 (529)
....+|.+|..|+.+.+..+.. ..+...|.+|++|+.+.+.. .++..+..+|.+|.+|+.+.+.. .++.++..+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred cccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhC
Confidence 3345666777777777754322 22344566777788777753 45556666777888888888864 366666677778
Q ss_pred CCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccChhHHHhccCCCCCcEEeecCcc
Q 009672 445 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 506 (529)
Q Consensus 445 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 506 (529)
|.+|+.+.|.++ ++.+...+|.+|++|+.+.+.++... ..++..+.+|+.+.+..+.
T Consensus 333 C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 888888888664 66666667788888888888776432 2456677788888776653
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.9e-13 Score=116.69 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=105.1
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhh-hhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 407 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 407 (529)
+.++++++.++.... .+ ..+++.|++++|.+...... .+..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678888887765432 12 23889999999988876553 477889999999999999887677788889999999999
Q ss_pred CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCC
Q 009672 408 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 408 ~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (529)
|+++...+..+.++++|++|++++|.++...+..+..+++|++|++++| .+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 9999887777888999999999999998887888888899999999999 444
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=9.1e-13 Score=111.92 Aligned_cols=108 Identities=19% Similarity=0.297 Sum_probs=60.1
Q ss_pred CCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhh-hhccCCCCCCeEec
Q 009672 375 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNL 453 (529)
Q Consensus 375 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l 453 (529)
+|+.|++++|.+... ..++.+++|+.|++++|.++..++..+..+++|++|++++|.++.... ..+..+++|++|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 455555555555442 234455555566666555555443344556666666666666654332 24555666666666
Q ss_pred CCCCCCChhHHH---HHhCCCCCCeeeccCCccCh
Q 009672 454 SQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 454 ~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~~~ 485 (529)
++| .++..... .+..+++|+.|++++|....
T Consensus 121 ~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 121 LRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 666 34432221 46667777777777776544
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=112.89 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=91.1
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.++.+++.++..... -.++++.|++++|.+.... ..+..+++|+.|++++|.++...+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~---~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG---IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC---CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC---CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5667777666544321 1257788888888777543 56777788888888888887766666777788888888888
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.++...+..|..+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8887777777778888888888888877666667777888888888873
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.3e-12 Score=111.24 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=66.4
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.++.+++.++..... -.++++.|++++|.+.......+..+++|++|++++|.++...+..++.+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4455555544433211 1245556666655555444444555555666666665555543334455556666666666
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 409 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 409 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
.++...+..+..+++|++|++++|.++......+..+++|++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 555554444555556666666666555544444455555666666665
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=2.6e-14 Score=124.10 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=94.7
Q ss_pred hhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCC
Q 009672 369 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 448 (529)
Q Consensus 369 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 448 (529)
.+..+++|++|++++|.+...+ .+..+++|+.|++++|.++.. +..+..+++|++|++++|.+++.. .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 5666777777777777776642 566777888888888877754 334455678888888888887642 46677888
Q ss_pred CeEecCCCCCCChhHH-HHHhCCCCCCeeeccCCccChhHHH----------hccCCCCCcEEeecCccCCh
Q 009672 449 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 449 ~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~~ 509 (529)
++|++++| .++.... ..+..+++|+.|++++|++.+..+. .+..+++|+.|+ ++.++.
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88888888 6666443 5677888888888888887665332 367788888887 665554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=8.5e-14 Score=120.87 Aligned_cols=132 Identities=24% Similarity=0.264 Sum_probs=73.4
Q ss_pred ccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc
Q 009672 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425 (529)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 425 (529)
+..+++|+.|++++|.+.... .+..+++|+.|++++|.+... +..+..+++|+.|++++|++++.. .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence 344455555555555444321 344455555555555555432 223334456666666666666542 355566666
Q ss_pred EEEccCCCCChhhh-hhccCCCCCCeEecCCCCCCChhHH----------HHHhCCCCCCeeeccCCccCh
Q 009672 426 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL----------ELISGLTGLVSLNVSNSRITS 485 (529)
Q Consensus 426 ~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~----------~~l~~l~~L~~L~l~~~~~~~ 485 (529)
+|++++|.++.... ..+..+++|++|++++| .+....+ ..+..+++|+.|+ +++++.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 66666666665433 34556666777777766 4433322 3467788888886 565543
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1e-12 Score=136.77 Aligned_cols=191 Identities=13% Similarity=0.024 Sum_probs=85.7
Q ss_pred CCCCeEecCCCcCChhhhHhhhcCCCccEEEc-----cCCCCChHHHHhhcCCCCCCEEECCCCCCChhhhhhhcCCCCC
Q 009672 254 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL-----GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 328 (529)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 328 (529)
+.++.+++.++.+.... ..+.....|..+.+ ..+.+. ..+..+..++.|+.|++++|.+..+ +..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCC-CGGGGGCCSC
T ss_pred CccceEEeeCCCCCcch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCC-ChhhcCCCCC
Confidence 45667777666655422 11112222222222 222222 2344466677777777777766543 3334467777
Q ss_pred CeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCC
Q 009672 329 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 408 (529)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 408 (529)
+.|++++|.++ ..+..++.+++|+.|++++|.+.. .+..+..+++|++|++++|.+... +..++.+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCC
Confidence 77777777766 334556667777777777777764 355566677777777777777654 334666777777777777
Q ss_pred CCChHHHHhhhcCC-CCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 409 RITDSGAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 409 ~l~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
.+++..+..+.... .+..+++++|.++...+ ..|+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 77766655553322 11235566666654322 24555555554
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=9e-11 Score=113.06 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=60.7
Q ss_pred ccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCc
Q 009672 346 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 425 (529)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 425 (529)
+..+..|+.+.+..+ +......++.++.+|+.+.+..+ +...+...|..|++|+.+.+.++.++..+..+|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334444444444332 33333344445555555555322 2222233445555566655555555555555566666666
Q ss_pred EEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCC
Q 009672 426 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 471 (529)
Q Consensus 426 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 471 (529)
.+.+.. .++.++..+|.+|.+|+.+.+..+ ++.+...+|.+++
T Consensus 314 ~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 314 SVTLPT-ALKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSS
T ss_pred EEEcCc-cccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCC
Confidence 666643 245555556666666666666543 4444444555543
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=2.6e-12 Score=133.71 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=83.1
Q ss_pred hcccCCccEEEccCCCCCHHHHHHhhcCCCCCeEecCCCcCChhhhHhhhcCCCccEEEccCCCCChHHHHhhcCCCCCC
Q 009672 226 LTSLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 305 (529)
Q Consensus 226 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 305 (529)
+..++.|+.|++++|.+.. .+..+..+++|+.|+|++|.+. ..+..+..+++|++|++++|.+. ..|..+..+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 4455677777777776664 2334446677777777777766 34455666777777777777766 3455566677777
Q ss_pred EEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCC-CCCeEeccCCCCChhhhhhhcCCCCCcEEECCCC
Q 009672 306 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 384 (529)
Q Consensus 306 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 384 (529)
.|++++|.+.. .+..++.+++|+.|++++|.+....+..+.... ....+++.+|.+....+ ..|+.|++..+
T Consensus 297 ~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 297 YFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp EEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred EEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 77777776654 344466677777777777776655554443321 11224455555543222 34555555544
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.19 E-value=5.3e-11 Score=98.28 Aligned_cols=102 Identities=20% Similarity=0.406 Sum_probs=86.0
Q ss_pred CCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCC----CCCCeeeccCCc-cChhHHHhccCCCC
Q 009672 422 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSR-ITSAGLRHLKPLKN 496 (529)
Q Consensus 422 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~~ 496 (529)
..|++|+++++.+++.+...+.++++|++|++++|..+++.....++.+ ++|+.|+|++|. +++.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688999999999888888888899999999999988999888888874 479999999985 89888888888999
Q ss_pred CcEEeecCcc-CChhH--HHHhhcCCCCCce
Q 009672 497 LRSLTLESCK-VTAND--IKRLQSRDLPNLV 524 (529)
Q Consensus 497 L~~L~l~~~~-~~~~~--~~~l~~~~~~~l~ 524 (529)
|++|++++|. ++..+ +..++ +.+|+++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~ 170 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFK-TSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred CCEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence 9999999994 77654 56666 6788876
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.17 E-value=1e-10 Score=112.60 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=75.6
Q ss_pred hcCCCCCCEEECCCCCCChhhhhhhcCCCCCCeEEcCCCccChhhhhhccCCCCCCeEeccCCCCChhhhhhhcCCCCCc
Q 009672 298 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 377 (529)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 377 (529)
+..+.+++.+.+... +..+....+..+..|+.+.+..+ ++......+..+.+|+.+.+.. .+.......|.+|.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 334445555554332 22233334445555555555433 3333334445555555555543 23333444555666666
Q ss_pred EEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCC
Q 009672 378 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 446 (529)
Q Consensus 378 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 446 (529)
.+.+..+.+...+...|.+|.+|+.+.+.. .++..+..+|.+|.+|+++.+..+ ++.++..+|.++.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 666665555544445566666666666654 255555556677777777776543 5555555665553
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=1.8e-11 Score=102.98 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=55.0
Q ss_pred CcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 376 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 376 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
.+.++++++.++..+ ..+ .++|+.|++++|.++...+..+.++++|++|++++|.++...+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 455666665555432 111 24555555555555555455555555555555555555554444445555555555555
Q ss_pred CCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 456 NCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 456 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
| .++...+..+..+++|+.|++++|++.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5 455444444555555555555555543
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=4.5e-11 Score=100.88 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=65.8
Q ss_pred cEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 377 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 377 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
+.++++++.+...+ ..+ .++|+.|++++|+++...+..+.++++|++|++++|.++...+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677776665542 112 256777777777776666666666777777777777766655545566666777777766
Q ss_pred CCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 457 CNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++...+..+..+++|+.|++++|++.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 566554445666666666666666654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=2.2e-09 Score=101.29 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=92.8
Q ss_pred hccCCCCCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHh--cCCCCCEEecCCC--CC-ChH----HH
Q 009672 345 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGA--RI-TDS----GA 415 (529)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~l-~~~----~~ 415 (529)
.+..+|+|+.|.+.++.-... ..+ ..++|+.|++..+.+.......+. .+|+|+.|+++.+ .. .+. ..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345566777777766521111 112 256777777777777766555554 5777777776421 11 110 01
Q ss_pred Hhh--hcCCCCcEEEccCCCCChhhhhhcc---CCCCCCeEecCCCCCCChhHHHHH----hCCCCCCeeeccCCccChh
Q 009672 416 AYL--RNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQNCNLTDKTLELI----SGLTGLVSLNVSNSRITSA 486 (529)
Q Consensus 416 ~~~--~~~~~L~~L~l~~~~l~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~ 486 (529)
..+ ..+++|+.|++.+|.+.+.+...+. .+++|++|+|+.| .+.+.....+ ..+++|+.|++++|.+++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 112 2467888888887777665444332 3577888888777 6777544333 3467788888888887776
Q ss_pred HHHhccC-CCCCcEEeecCcc
Q 009672 487 GLRHLKP-LKNLRSLTLESCK 506 (529)
Q Consensus 487 ~~~~~~~-~~~L~~L~l~~~~ 506 (529)
....+.. + ...+++++++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 6655543 2 3557777776
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=7.7e-11 Score=99.10 Aligned_cols=103 Identities=23% Similarity=0.222 Sum_probs=78.0
Q ss_pred CCCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEcc
Q 009672 351 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430 (529)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 430 (529)
..+.++++++.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|+++...+..|.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35677888877766432 22 2678888888888877666667778888888888888887777677788888888888
Q ss_pred CCCCChhhhhhccCCCCCCeEecCCC
Q 009672 431 GGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 431 ~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
+|.++...+..+..+++|++|++++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 88887776666777888888888888
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.02 E-value=3.5e-10 Score=93.34 Aligned_cols=88 Identities=22% Similarity=0.338 Sum_probs=54.0
Q ss_pred ceeEEEecCcccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCC----CCCCEEEcCCCCccchhHHHHHhCCCCC
Q 009672 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLINL 133 (529)
Q Consensus 58 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~L 133 (529)
.|++||++++.+++.....++.+++|+.|+|++|..+++.+...+..+ ++|++|+|++|..+++.....+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 466666666666666666666666666666666666666666666553 3566666666655566655556666666
Q ss_pred CEEeccCccccc
Q 009672 134 VKLDLERCTRIH 145 (529)
Q Consensus 134 ~~L~l~~~~~~~ 145 (529)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 666666654433
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.3e-10 Score=97.99 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=82.6
Q ss_pred CCeEeccCCCCChhhhhhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEccC
Q 009672 352 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 431 (529)
Q Consensus 352 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 431 (529)
-+.++++++.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|+++...+..+.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4678888887766433 23 27889999999988887667788888999999999988887776778888999999999
Q ss_pred CCCChhhhhhccCCCCCCeEecCCCC
Q 009672 432 GGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 432 ~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
|.++...+..+..+++|++|++++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 98887766668888899999999983
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=1.5e-09 Score=102.42 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=107.6
Q ss_pred hhhcCCCCCcEEECCCCCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhh--cCCCCcEEEccC--CC-CChhhh---
Q 009672 368 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICG--GG-LTDAGV--- 439 (529)
Q Consensus 368 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~--~~-l~~~~~--- 439 (529)
..+..+++|+.|.+.++.-... ..+ .+++|+.|++..|.+.......+. .+|+|+.|+|.. +. ..+...
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 4456789999999988731111 112 478999999999999887766664 799999999853 11 111111
Q ss_pred -hhc--cCCCCCCeEecCCCCCCChhHHHHHh---CCCCCCeeeccCCccChhHHHhc----cCCCCCcEEeecCccCCh
Q 009672 440 -KHI--KDLSSLTLLNLSQNCNLTDKTLELIS---GLTGLVSLNVSNSRITSAGLRHL----KPLKNLRSLTLESCKVTA 509 (529)
Q Consensus 440 -~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~ 509 (529)
..+ ..+|+|++|++.+| .+.+.....+. .+++|+.|+|+.|.+.+.+..++ ..+++|++|++++|.++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 122 24799999999999 67765555554 47899999999999998765444 456999999999999999
Q ss_pred hHHHHhh
Q 009672 510 NDIKRLQ 516 (529)
Q Consensus 510 ~~~~~l~ 516 (529)
..++.+.
T Consensus 322 ~~~~~l~ 328 (362)
T 2ra8_A 322 EMKKELQ 328 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998888
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.98 E-value=3.6e-09 Score=90.06 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=56.5
Q ss_pred hhcCCCCCcEEECCCC-CCCHHHHHHH----hcCCCCCEEecCCCCCChHHHHh----hhcCCCCcEEEccCCCCChhhh
Q 009672 369 KLAGLSSLKSLNLDAR-QITDTGLAAL----TSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGV 439 (529)
Q Consensus 369 ~l~~~~~L~~L~l~~~-~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~ 439 (529)
.+...++|++|++++| .+...+...+ ...++|++|++++|.+.+.+... +...++|++|++++|.+++.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3344555555555555 5554333222 23344555555555554433222 2333444444444444444432
Q ss_pred hhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeec--cCCccChhHH----HhccCCCCCcEEeecCccCChh
Q 009672 440 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGL----RHLKPLKNLRSLTLESCKVTAN 510 (529)
Q Consensus 440 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~ 510 (529)
..+ ...+...+.|+.|++ ++|.+...+. ..+...++|++|++++|.++..
T Consensus 111 ~~l---------------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 111 LAL---------------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHH---------------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHH---------------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 221 122333455555555 5555554433 2334445666666666665544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.89 E-value=2.2e-08 Score=85.10 Aligned_cols=116 Identities=21% Similarity=0.165 Sum_probs=86.2
Q ss_pred hhhhhccCCCCCCeEeccCC-CCChhhhhh----hcCCCCCcEEECCCCCCCHHHHHHH----hcCCCCCEEecCCCCCC
Q 009672 341 SGLRHLSGLTNLESINLSFT-GISDGSLRK----LAGLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARIT 411 (529)
Q Consensus 341 ~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~ 411 (529)
.....+...+.|+.|++++| .+.+..... +...++|++|++++|.+.+.+...+ ...++|++|++++|.++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 33456678899999999999 998865543 4567899999999999998765444 46689999999999999
Q ss_pred hHHHH----hhhcCCCCcEEEc--cCCCCChhhhhhc----cCCCCCCeEecCCC
Q 009672 412 DSGAA----YLRNFKNLRSLEI--CGGGLTDAGVKHI----KDLSSLTLLNLSQN 456 (529)
Q Consensus 412 ~~~~~----~~~~~~~L~~L~l--~~~~l~~~~~~~~----~~~~~L~~L~l~~~ 456 (529)
+.+.. .+...++|++|++ ++|.+++.+...+ ...++|++|++++|
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 87644 4466678888888 7788877665433 23355666666555
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=2.5e-09 Score=101.51 Aligned_cols=102 Identities=25% Similarity=0.277 Sum_probs=51.0
Q ss_pred EECCCC-CCCHHHHHHHhcCCCCCEEecCC-CCCChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCC
Q 009672 379 LNLDAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 456 (529)
Q Consensus 379 L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 456 (529)
++++++ .++.. |. +..+++|+.|++++ |.++...+..|.++++|+.|+|++|.++...+..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 444444 45443 22 44555555555553 5555554445555555555555555555554445555555555555555
Q ss_pred CCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 457 CNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 457 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++...+..+..++ |+.|++.+|++.
T Consensus 91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 -ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 44443333333333 555555555443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=9.1e-09 Score=97.66 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=86.8
Q ss_pred CeEeccCC-CCChhhhhhhcCCCCCcEEECCC-CCCCHHHHHHHhcCCCCCEEecCCCCCChHHHHhhhcCCCCcEEEcc
Q 009672 353 ESINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 430 (529)
Q Consensus 353 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 430 (529)
..++.+++ .+..+. . +..+++|+.|++++ |.+....+..|+.+++|+.|+|++|+++...+..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 777643 4 88888999999996 99988777778899999999999999999888888999999999999
Q ss_pred CCCCChhhhhhccCCCCCCeEecCCCCCCC
Q 009672 431 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 460 (529)
Q Consensus 431 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~ 460 (529)
+|.++...+..+..++ |+.|++.+| .+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 9999887666666555 999999999 454
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.14 E-value=1.9e-05 Score=66.49 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=45.3
Q ss_pred cCCCCCcEEECCCC-CCCHHHHHHH----hcCCCCCEEecCCCCCChHHHH----hhhcCCCCcEEEccCCCCChhhhhh
Q 009672 371 AGLSSLKSLNLDAR-QITDTGLAAL----TSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKH 441 (529)
Q Consensus 371 ~~~~~L~~L~l~~~-~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~ 441 (529)
.+-+.|++|+++++ .+.+.+...+ ..-..|+.|++++|++.+.+.. .+...+.|++|+|+.|.+++.+..+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666663 6655433322 3345566666666666654432 2344556666666666666555443
Q ss_pred c----cCCCCCCeEecCCC
Q 009672 442 I----KDLSSLTLLNLSQN 456 (529)
Q Consensus 442 ~----~~~~~L~~L~l~~~ 456 (529)
+ ..-..|++|+|+++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3 22244555555543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=1.5e-06 Score=77.50 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=20.1
Q ss_pred cCCCCCEEecCCCCCChHH--HHhhhcCCCCcEEEccCCCCCh
Q 009672 396 SLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGGGLTD 436 (529)
Q Consensus 396 ~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~l~~ 436 (529)
++++|+.|++++|.+++.. +..+..+++|+.|+|++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 4455555555555555421 2333445555555555555544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.99 E-value=5.7e-05 Score=63.53 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred cCCCCCCeEeccCC-CCChhhh----hhhcCCCCCcEEECCCCCCCHHHHHH----HhcCCCCCEEecCCCCCChHHHHh
Q 009672 347 SGLTNLESINLSFT-GISDGSL----RKLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAAY 417 (529)
Q Consensus 347 ~~~~~L~~L~l~~~-~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~~ 417 (529)
...+.|+.|+++++ .+.+.+. ..+..-..|+.|++++|.+.+.+... +..-..|+.|+|+.|.|++.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33455555555553 5554332 22334456666666666666554332 334466777777777777665443
Q ss_pred ----hhcCCCCcEEEccCC---CCChhhhhh----ccCCCCCCeEecCCC
Q 009672 418 ----LRNFKNLRSLEICGG---GLTDAGVKH----IKDLSSLTLLNLSQN 456 (529)
Q Consensus 418 ----~~~~~~L~~L~l~~~---~l~~~~~~~----~~~~~~L~~L~l~~~ 456 (529)
+.....|++|+++++ .+.+.+... +..-++|++|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 345567777777654 445543332 233456666666655
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=3.7e-05 Score=68.52 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=59.2
Q ss_pred HHHHhcCCceeEEEecCcccCchh--hhhccCCCCCCeEeccCCcccCch-hhhhccCCCCCCEEEcCCCCccch-----
Q 009672 50 DVIASQGSSLLSVDLSGSDVTDSG--LIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAITA----- 121 (529)
Q Consensus 50 ~~~~~~~~~l~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~----- 121 (529)
......+++|++|+|++|.+++.. +..++.+++|+.|+|++| .+++. ....+..+ +|++|+|++|+. ..
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl-~~~~~~~ 239 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSL-CDTFRDQ 239 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTT-GGGCSSH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcC-ccccCcc
Confidence 344456789999999999998733 345678999999999987 56654 23344444 899999999884 32
Q ss_pred --hHHHHHhCCCCCCEEe
Q 009672 122 --QGMKAFAGLINLVKLD 137 (529)
Q Consensus 122 --~~~~~~~~~~~L~~L~ 137 (529)
.....+..+++|+.|+
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 2234566677777776
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.03 E-value=0.016 Score=45.26 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=33.6
Q ss_pred EEecCCCCCC--hHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCCCC
Q 009672 402 HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 457 (529)
Q Consensus 402 ~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 457 (529)
.++.+++.++ ..+. . -.++|++|+|++|.++......|..+++|++|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~-~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-A--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCS-C--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCC-C--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566666665 3321 1 12367777777777777666666777777777777774
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.44 E-value=0.035 Score=43.29 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=38.1
Q ss_pred EEEccCCCCC--hhhhhhccCCCCCCeEecCCCCCCChhHHHHHhCCCCCCeeeccCCccC
Q 009672 426 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 484 (529)
Q Consensus 426 ~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 484 (529)
.++-++++++ .. +..+. ++|++|+|++| .++......|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 32 33222 46888888888 777776677777888888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.31 E-value=0.62 Score=34.03 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=31.5
Q ss_pred cccCchhhhhccCCCCCCeEeccCCcccCchhhhhccCCCCCCEEEcCCC
Q 009672 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116 (529)
Q Consensus 67 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 116 (529)
..++.....+|..|..|+.+.|.. .+..++...|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 445556666677777777777764 366666667777777777776653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.88 E-value=0.6 Score=34.10 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=21.7
Q ss_pred ChHHHHhhhcCCCCcEEEccCCCCChhhhhhccCCCCCCeEecCC
Q 009672 411 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 455 (529)
Q Consensus 411 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 455 (529)
+.....+|.+|.+|+++.+.. .++.++..+|.+|.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 333344555555555555543 23344444555555555555544
Done!