Your job contains 1 sequence.
>009675
MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM
PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI
YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS
YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD
LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV
LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL
YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWD
VWPVLPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNH
FSQIFISSQDMTDGGQYSEFWNRDDEASGSEEDISDCDGNINLVIISRC
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009675
(529 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 1543 3.5e-178 2
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 770 1.4e-80 2
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 765 2.8e-80 2
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 772 3.4e-80 3
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 799 1.6e-79 1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 770 2.0e-79 2
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 755 3.2e-79 2
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 792 3.2e-79 2
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 772 1.4e-78 3
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 796 3.3e-78 1
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 786 3.8e-78 1
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 780 5.3e-78 2
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 759 7.5e-78 2
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 791 1.1e-77 1
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 791 1.2e-77 1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 789 1.2e-77 1
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 780 1.6e-77 1
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 789 1.9e-77 1
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 769 1.9e-77 2
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 785 5.1e-77 1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 773 9.0e-77 1
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 770 1.9e-76 1
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 778 3.4e-76 1
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 775 5.2e-76 1
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 759 1.3e-74 1
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 731 1.8e-74 2
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 751 1.9e-74 1
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 743 7.8e-74 2
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 737 5.9e-73 1
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 745 8.0e-73 1
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 708 8.6e-73 2
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 716 1.5e-72 3
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 733 1.6e-72 1
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 708 2.3e-72 2
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 731 2.5e-72 1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 729 4.1e-72 1
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 729 4.1e-72 1
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 729 4.1e-72 1
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd... 699 9.7e-72 2
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 723 1.8e-71 1
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 719 4.8e-71 1
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 716 9.9e-71 1
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 715 1.3e-70 1
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 714 1.6e-70 1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 714 1.6e-70 1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 714 1.6e-70 1
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 710 4.3e-70 1
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 706 1.1e-69 1
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7... 671 2.7e-69 2
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 687 9.0e-67 1
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 687 9.0e-67 1
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 685 2.9e-66 1
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic... 669 1.6e-65 1
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 657 1.8e-64 1
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric... 428 3.8e-64 3
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 662 9.4e-64 1
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 662 1.1e-63 1
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN... 649 1.2e-63 1
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 659 1.4e-63 1
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 659 1.5e-63 1
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 647 4.3e-63 2
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 646 2.0e-62 1
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 497 2.7e-62 2
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 623 7.1e-61 1
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 629 1.0e-60 1
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 628 3.5e-60 1
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 624 1.1e-59 1
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 623 1.2e-59 1
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 619 3.2e-59 1
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 562 2.1e-54 1
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 566 3.3e-54 1
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 382 3.8e-54 2
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 568 9.7e-54 1
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 554 1.5e-53 1
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 554 1.5e-53 1
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 546 1.0e-52 1
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 546 1.0e-52 1
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 486 2.3e-46 1
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe... 429 6.6e-39 1
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he... 429 6.6e-39 1
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 427 7.9e-39 1
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 425 1.3e-38 1
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 425 1.3e-38 1
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 425 1.3e-38 1
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 299 1.8e-37 2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 297 3.0e-37 2
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 411 4.1e-37 1
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 288 7.8e-37 3
UNIPROTKB|J3KSL7 - symbol:RECQL5 "ATP-dependent DNA helic... 318 3.4e-28 1
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 198 2.5e-27 3
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 302 1.8e-23 1
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 300 3.0e-23 1
UNIPROTKB|E2RDN3 - symbol:E2RDN3 "Uncharacterized protein... 289 4.7e-22 1
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer... 288 9.3e-22 1
UNIPROTKB|F8WD97 - symbol:RECQL "ATP-dependent DNA helica... 255 3.4e-21 1
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica... 274 4.3e-20 1
POMBASE|SPAC212.11 - symbol:tlh1 "RecQ type DNA helicase"... 274 4.8e-20 1
UNIPROTKB|F8WA66 - symbol:RECQL "ATP-dependent DNA helica... 239 1.9e-19 1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo... 261 3.7e-19 1
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b... 261 3.7e-19 1
WARNING: Descriptions of 466 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 1543 (548.2 bits), Expect = 3.5e-178, Sum P(2) = 3.5e-178
Identities = 301/427 (70%), Positives = 358/427 (83%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +Q+ + KN + KEALVKLLRWHFGHA FR KQL+AIQAV+SGRDCFCLM
Sbjct: 1 MKKSPLPVQNVQSSDKN--VAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQIPALAKPGIVLVVSPLIALMENQV+ LKEKGIA E+LSSTQ VK KI
Sbjct: 59 PTGGGKSICYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKX 240
YR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL L+NPLVLKSSFNRPN+FYEVRYK
Sbjct: 179 YRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKD 238
Query: 241 XXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN K RS+V
Sbjct: 239 LLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQLPS+S+L
Sbjct: 299 LDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL 358
Query: 361 YYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQVL---DVAGKRFSRVLGNR 417
YYG+DDR++ME++L + + SSKK SDF Q++ + +G R ++L +
Sbjct: 359 YYGVDDRKKMEYLLRNSE-------NKKSSSSKKPTSDFEQIVTYCEGSGCRRKKILES- 410
Query: 418 YWDVWPV 424
+ + +PV
Sbjct: 411 FGEEFPV 417
Score = 209 (78.6 bits), Expect = 3.5e-178, Sum P(2) = 3.5e-178
Identities = 39/76 (51%), Positives = 55/76 (72%)
Query: 444 KQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI-SSQDMTDGGQYSEFWN 502
++ PV CK +CDACKHPN +A L EL + ++++ S+IFI SS + T+ GQYSEFWN
Sbjct: 413 EEFPVQQCKKTCDACKHPNQVAHCLEELMTTASRRHNSSRIFITSSNNKTNEGQYSEFWN 472
Query: 503 RDDEASGSEEDISDCD 518
R+++ S S E+ISD D
Sbjct: 473 RNEDGSNSNEEISDSD 488
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 770 (276.1 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 168/404 (41%), Positives = 233/404 (57%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+SPLIAL+
Sbjct: 29 FGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIALI 88
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A F L
Sbjct: 89 QDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLN 148
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA +VQ D+
Sbjct: 149 SLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDI 208
Query: 212 MESLCLQNPLV-LKSSFNRPNLFYEVRYKXXXX---XXXXXXC-SVLKANGDT-----CA 261
+ +L L+ PL K+ R NLFY+V++K C L+ T C
Sbjct: 209 VTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCG 268
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT++FGMG
Sbjct: 269 IVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMG 328
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXX 381
+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 329 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKI 388
Query: 382 XXXFSTRERSSKKSISDFSQVLDVAGKRFSR--VLGNRYWDVWP 423
T + S K ++ F ++ + R + + DV P
Sbjct: 389 QEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTP 432
Score = 58 (25.5 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 451 CKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI----SSQDMTD-----GGQYS--E 499
C CD CK+P + + L L N++S+ I SS D D GG+
Sbjct: 434 CNKCCDYCKNPEAVKRQLEALERC---SNNWSKTCIGPTGSSWDSYDPELYEGGRRGCRG 490
Query: 500 FWNRDDEASGSEEDISD 516
F D+E+SG+ ++ ++
Sbjct: 491 FSRYDEESSGNGDEANE 507
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 765 (274.4 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 160/372 (43%), Positives = 227/372 (61%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSSPFDPERRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKXXXXXXXXXXC 250
D P +ALTATA P+V++DV +L L+ P+ K+ R NLFY+V++K
Sbjct: 183 ADAPCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLR 242
Query: 251 SV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
LKA G C I+YC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCLKALGQKADKGLSGCGIIYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFIL 374
DR ++ F++
Sbjct: 363 SRSDRDQVSFLI 374
Score = 60 (26.2 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 451 CKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFIS-SQ------DMTDGGQ--YSEFW 501
C CD C++P + K L A+ Q++ +++ I SQ ++ +GG+ Y F
Sbjct: 426 CTKGCDCCQNPTGVRKQL----DALEQRSSWNKTCIGPSQGNGYDPELYEGGRRGYGGF- 480
Query: 502 NRDDEASGSEED 513
+R DE SG D
Sbjct: 481 SRYDEGSGGSGD 492
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 772 (276.8 bits), Expect = 3.4e-80, Sum P(3) = 3.4e-80
Identities = 165/380 (43%), Positives = 224/380 (58%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 356 ISAKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 415
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 416 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 475
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 476 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 535
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 536 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 595
Query: 236 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 596 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 655
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 656 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGE 715
Query: 355 PSKSLLYYGMDDRRRMEFIL 374
S LL+Y D R+ ++
Sbjct: 716 MSHCLLFYSYSDVTRLRRLI 735
Score = 41 (19.5 bits), Expect = 3.4e-80, Sum P(3) = 3.4e-80
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLL 30
K P A Q +S +K LH ++ L ++
Sbjct: 56 KQPAAEQDSSAEHADKGLHLEQQLYSVM 83
Score = 37 (18.1 bits), Expect = 3.4e-80, Sum P(3) = 3.4e-80
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 386 STRERSSKKSISDFSQVLDVAGKRFSR 412
++RE KK+ S SQ G R+ R
Sbjct: 1070 NSRESKRKKTSSGGSQQFYSKGARYRR 1096
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 168/351 (47%), Positives = 220/351 (62%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +
Sbjct: 233 KE-LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTV 291
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPL +L+E+Q + +KE GI E L++ + KIY +L SG PS++LLYVTPE +
Sbjct: 292 VVSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKIS 351
Query: 143 TPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YL-PDVPILAL 199
G ++ + +H RGLL IDEAHC+S WGHDFRP Y KLSSLR Y P VPI+AL
Sbjct: 352 ASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIAL 411
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDT 259
TATA PK+ D + L +QN + SSF R NL Y++ K G +
Sbjct: 412 TATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLYPGKS 471
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R C+ + L+ G+S YHAGLND R SV WI+++ V+ AT+AFG
Sbjct: 472 -GIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFG 530
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
MGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+
Sbjct: 531 MGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRL 581
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 770 (276.1 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 168/404 (41%), Positives = 233/404 (57%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+SPLIAL+
Sbjct: 29 FGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIALI 88
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A F L
Sbjct: 89 QDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLN 148
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA +VQ D+
Sbjct: 149 SLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDI 208
Query: 212 MESLCLQNPLV-LKSSFNRPNLFYEVRYKXXXX---XXXXXXC-SVLKANGDT-----CA 261
+ +L L+ PL K+ R NLFY+V++K C L+ T C
Sbjct: 209 VTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCG 268
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT++FGMG
Sbjct: 269 IVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMG 328
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXX 381
+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 329 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKI 388
Query: 382 XXXFSTRERSSKKSISDFSQVLDVAGKRFSR--VLGNRYWDVWP 423
T + S K ++ F ++ + R + + DV P
Sbjct: 389 QEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTP 432
Score = 47 (21.6 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 451 CKNSCDACKHPNLLAKYL 468
C CD CK+P + + L
Sbjct: 434 CNKCCDYCKNPEAVKRQL 451
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 755 (270.8 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 160/368 (43%), Positives = 223/368 (60%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 5 PFDRERRVRSTLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALL 64
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q K ++ DL+ KP +LLY+
Sbjct: 65 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYI 124
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+P F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 125 TPEMAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPC 184
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LK 254
+ALTATA +VQ+DV +L L+ P+ K+ R NLFY+V++K LK
Sbjct: 185 IALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244
Query: 255 ANGDT--------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A G C IVYC R C++L+ LS G++ AYHAGL R+ V ++W+
Sbjct: 245 ALGQKADKGLLSGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKASERTLVQNEWME 304
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +D
Sbjct: 305 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 364
Query: 367 RRRMEFIL 374
R ++ F++
Sbjct: 365 RDQVSFLI 372
Score = 60 (26.2 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 23/68 (33%), Positives = 30/68 (44%)
Query: 451 CKNSCDACKHPNLLAKYLGELT-SAVLQKNHF--SQIFISSQDMTDGGQ--YSEFWNRDD 505
C CD C+ P L K L L S+ K SQ ++ +GG+ Y F +R D
Sbjct: 424 CTKGCDHCRDPAALRKRLDALEHSSSWNKTCIGPSQGNGFDPELYEGGRRGYGGF-SRYD 482
Query: 506 EASGSEED 513
E SG D
Sbjct: 483 EGSGGSGD 490
Score = 45 (20.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 448 VSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTDGGQYSEFWNR 503
V+ C+ C+H +AKY G+ A + + + + D ++S WN+
Sbjct: 400 VTFCEEL--GCRHA-AIAKYFGDAPPACTKGCDHCRDPAALRKRLDALEHSSSWNK 452
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 792 (283.9 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 165/393 (41%), Positives = 235/393 (59%)
Query: 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71
S+ + N P +K ++ + R FG FR+ Q + I + L G D F LMPTGGGKS+CYQ
Sbjct: 502 SRFKGNFPWSQK--IIDINRSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCYQ 559
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
IPAL + G+ +V+SPLI+L+ +QV L+ G LSS + +Y+D+ S P +
Sbjct: 560 IPALYQKGLTIVISPLISLINDQVEFLETLGYPAAALSSAVSSDAAIDVYKDIRSNSPKI 619
Query: 132 RLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
RLLY+TPE + + + L + +GL + + IDEAHC+S WGHDFRP Y++LS LR
Sbjct: 620 RLLYLTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRRK 679
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC 250
P VPILALTATA +V+ DV+ +L ++NP+ K SFNRPNL Y+V K
Sbjct: 680 FPKVPILALTATATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVLKKTKQVVDDMSKF 739
Query: 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
+ D IVYC+ + C+ ++ L IS A YHAGL + R+ V +W R +
Sbjct: 740 -IHSTYPDKSGIVYCISKYDCENVAKRLRELKISAAHYHAGLENDERAKVQANWQKGRIK 798
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
V+VAT+AFGMGI++ DVR V H ++PKS+E +YQESGRAGRD S LLY+ D+ R
Sbjct: 799 VIVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHCLLYFSWADKLRN 858
Query: 371 EFILXXXXXXXX-XXFSTRE-RSSKKSISDFSQ 401
+ ++ +TRE R S + ++ +
Sbjct: 859 DLLIQNSFTSGQGSSHNTRETRDSLNKMVNYCE 891
Score = 37 (18.1 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 451 CKNSCDAC 458
CK +CD C
Sbjct: 914 CKKTCDNC 921
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 772 (276.8 bits), Expect = 1.4e-78, Sum P(3) = 1.4e-78
Identities = 165/380 (43%), Positives = 224/380 (58%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 594 ISAKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 653
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 654 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 713
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 714 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 773
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 774 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 833
Query: 236 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 834 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 893
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 894 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGE 953
Query: 355 PSKSLLYYGMDDRRRMEFIL 374
S LL+Y D R+ ++
Sbjct: 954 MSHCLLFYSYSDVTRLRRLI 973
Score = 41 (19.5 bits), Expect = 1.4e-78, Sum P(3) = 1.4e-78
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLL 30
K P A Q +S +K LH ++ L ++
Sbjct: 294 KQPAAEQDSSAEHADKGLHLEQQLYSVM 321
Score = 37 (18.1 bits), Expect = 1.4e-78, Sum P(3) = 1.4e-78
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 386 STRERSSKKSISDFSQVLDVAGKRFSR 412
++RE KK+ S SQ G R+ R
Sbjct: 1308 NSRESKRKKTSSGGSQQFYSKGARYRR 1334
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 796 (285.3 bits), Expect = 3.3e-78, P = 3.3e-78
Identities = 165/360 (45%), Positives = 221/360 (61%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N P H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA
Sbjct: 648 NFP-HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACV 705
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PG+ +V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYV
Sbjct: 706 SPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYV 765
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y++++ LR P VP
Sbjct: 766 TPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVP 825
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
++ALTATA P+VQKD++ L + P V SFNR NL Y V K + K
Sbjct: 826 VMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKH 885
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVA 314
+ I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ A
Sbjct: 886 HPHDSGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICA 945
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++
Sbjct: 946 TIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLI 1005
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 164/360 (45%), Positives = 220/360 (61%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N P H KE ++K+ R FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA
Sbjct: 639 NFP-HTKE-MMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACV 696
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PG+ +V+SPL +L+ +QV L I +L+ +T IY L P ++LLYV
Sbjct: 697 SPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYV 756
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP
Sbjct: 757 TPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVP 816
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
++ALTATA P+VQKD++ L + P V SFNR NL Y V K + K
Sbjct: 817 VMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKH 876
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVA 314
+ I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ A
Sbjct: 877 HPYDSGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICA 936
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++
Sbjct: 937 TIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 996
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 780 (279.6 bits), Expect = 5.3e-78, Sum P(2) = 5.3e-78
Identities = 167/360 (46%), Positives = 216/360 (60%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N P H E ++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA
Sbjct: 640 NFP-HSPE-MMKIFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACV 697
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ +V+SPL +L+ +QV L I LS + +IY L P+++LLY
Sbjct: 698 SAGVTVVISPLRSLIVDQVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYA 757
Query: 137 TPELTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPE G M S L+ ++ RGLL + IDEAHC+S WGHDFRP Y++L LR P+VP
Sbjct: 758 TPEKVCASGRMISALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVP 817
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
I+ALTATA P+VQKD++ L + P V SFNR NL Y V K + K
Sbjct: 818 IMALTATATPRVQKDILNQLAMTRPQVFTMSFNRNNLKYSVLPKKPKKVDEECIQWIKKY 877
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVA 314
IVYCL R CD L+ L GI+ AYHAGL+D R V + WI+ QV+ A
Sbjct: 878 YPRDSGIVYCLSRNDCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCA 937
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++
Sbjct: 938 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLI 997
Score = 43 (20.2 bits), Expect = 5.3e-78, Sum P(2) = 5.3e-78
Identities = 31/127 (24%), Positives = 47/127 (37%)
Query: 386 STRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQ 445
S RE KK + + + + K+ +V G Y++++ + L +L Q
Sbjct: 1201 SKREEMVKKCLGELNDLC----KKLGKVFGIHYYNIFSTATLKKIAET--LSADPEVLLQ 1254
Query: 446 IP-VSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTDGGQYSEFWNRD 504
I V+ K + LL KY A Q I D T G Q E N D
Sbjct: 1255 IDGVTEDKLEKYGAEFIELLQKYSEWQLPAEAQAESSGWI-----DTTRGHQNDEDDNDD 1309
Query: 505 DEASGSE 511
D+ G +
Sbjct: 1310 DDEGGGD 1316
Score = 41 (19.5 bits), Expect = 8.5e-78, Sum P(2) = 8.5e-78
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 434 VLLYYSFHLLKQIPVSLCKNS----CDACKHPN 462
+L Y+ H S CK CD C PN
Sbjct: 1033 LLAYFGEHTFN---TSFCKEHPEVICDNCARPN 1062
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 759 (272.2 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 159/367 (43%), Positives = 224/367 (61%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFIL 374
++ F++
Sbjct: 369 DQVSFLI 375
Score = 43 (20.2 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 451 CKNSCDACKHPNLLAKYLGEL 471
C CD C++P + + L L
Sbjct: 427 CAKGCDHCQNPTAVRRRLEAL 447
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 791 (283.5 bits), Expect = 1.1e-77, P = 1.1e-77
Identities = 163/356 (45%), Positives = 218/356 (61%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 640 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 698
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 699 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 758
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 759 VCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 818
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K + K +
Sbjct: 819 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPHD 878
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 879 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 938
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++
Sbjct: 939 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 994
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 791 (283.5 bits), Expect = 1.2e-77, P = 1.2e-77
Identities = 163/356 (45%), Positives = 218/356 (61%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 653 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 711
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 712 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 771
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 772 VCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 831
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K + K +
Sbjct: 832 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPHD 891
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 892 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 951
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++
Sbjct: 952 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 1007
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 789 (282.8 bits), Expect = 1.2e-77, P = 1.2e-77
Identities = 163/356 (45%), Positives = 218/356 (61%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 1005
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 160/369 (43%), Positives = 232/369 (62%)
Query: 4 SPLAMQSTSQTQKN-KPLHEKEALVKLLRWH-FGHAQFRDKQLDAIQAVLSGRDCFCLMP 61
SP+A S +N E ++ +R++ FG +++R Q + I A+++GRD +M
Sbjct: 53 SPVASSGGSSAIENWSETFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMA 112
Query: 62 TGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIY 121
GGGKS+CYQ+PA+ + G LVVSPL++L+++QV+GL GI+ L+ST + + +Y
Sbjct: 113 AGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVY 172
Query: 122 EDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+ L+ G+ L++LYVTPE ++ + FMSKL+K H+ G L+L++IDEAHC S WGHDFRP
Sbjct: 173 KALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPD 232
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKX 240
Y+ LS L+ P VP++ALTATA KVQ D++E L + + SS NRPNLFY VR K
Sbjct: 233 YKNLSILKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKS 292
Query: 241 XXXXXXXXXCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
+ + + IVYC R C++++ L GIS YHA ++ R
Sbjct: 293 AVGKLVVDEIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMR 352
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
V W ++ QV+V TVAFGMGI++ DVR V H ++ KSME +YQESGRAGRD LPS+
Sbjct: 353 EKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSE 412
Query: 358 SLLYYGMDD 366
+L++ D
Sbjct: 413 CILFFRSAD 421
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 789 (282.8 bits), Expect = 1.9e-77, P = 1.9e-77
Identities = 163/356 (45%), Positives = 218/356 (61%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI 1005
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 769 (275.8 bits), Expect = 1.9e-77, Sum P(2) = 1.9e-77
Identities = 164/380 (43%), Positives = 224/380 (58%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++++S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 356 ISVKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 415
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 416 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 475
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 476 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 535
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 536 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 595
Query: 236 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 596 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 655
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +Y ESGRAGRD
Sbjct: 656 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGE 715
Query: 355 PSKSLLYYGMDDRRRMEFIL 374
S LL+Y D R+ ++
Sbjct: 716 MSHCLLFYSYSDVTRLRRLI 735
Score = 38 (18.4 bits), Expect = 1.9e-77, Sum P(2) = 1.9e-77
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLL 30
K P A Q +S ++ LH ++ L ++
Sbjct: 56 KQPAAEQDSSAEHADRGLHLEQQLYSVM 83
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 785 (281.4 bits), Expect = 5.1e-77, P = 5.1e-77
Identities = 164/360 (45%), Positives = 219/360 (60%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N P H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA
Sbjct: 656 NFP-HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACV 713
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PG+ +V+SPL +L+ +QV L I +L+ +T IY L P ++LLYV
Sbjct: 714 SPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYV 773
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP
Sbjct: 774 TPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVP 833
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
++ALTATA P+VQKD++ L + P V SFNR NL Y V K + K
Sbjct: 834 VMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKH 893
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVA 314
+ I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ A
Sbjct: 894 HPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICA 953
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++
Sbjct: 954 TIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 1013
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 190/511 (37%), Positives = 275/511 (53%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPI 427
++ F++ + S K +I F ++ F LG R+
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVT-----FCEELGCRH--------- 413
Query: 428 GWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF--SQI 484
+ + Y+ +P C CD C++P + + L L S+ K SQ
Sbjct: 414 ----AAIAKYFG----DALPA--CAKGCDHCQNPTAVRRRLEALERSSSWSKTCIGPSQG 463
Query: 485 FISSQDMTDGGQ--YSEFWNRDDEASGSEED 513
++ +GG+ Y +F +R DE SG D
Sbjct: 464 NGFDPELYEGGRKGYGDF-SRYDEGSGGSGD 493
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 190/512 (37%), Positives = 277/512 (54%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ+PA+
Sbjct: 9 PFDRERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLK 248
Query: 255 A------NGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A NG + C IVYC R C++L+ LS+ G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQKADNGSSSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASERTQVQNEWME 308
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +D
Sbjct: 309 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 368
Query: 367 RRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLP 426
R ++ F++ + S K ++ F ++ F +G R+
Sbjct: 369 RDQVSFLIRKELAKLQEKRGNKP-SDKATLLAFDALVT-----FCEEVGCRH-------- 414
Query: 427 IGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF--SQ 483
+ + Y+ P + C CD C+ P + K L L S+ K SQ
Sbjct: 415 -----AAIAKYFG-----DAPPA-CAKGCDCCQSPAAIRKKLDALEHSSSWGKTCIGPSQ 463
Query: 484 IFISSQDMTDGGQ--YSEFWNRDDEASGSEED 513
++ +GG+ Y F +R DE SG D
Sbjct: 464 GDGFDPELYEGGRRGYGGF-SRYDEGSGGSGD 494
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 778 (278.9 bits), Expect = 3.4e-76, P = 3.4e-76
Identities = 155/346 (44%), Positives = 210/346 (60%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+SPL +
Sbjct: 729 LSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKS 788
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMS 148
L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++ F
Sbjct: 789 LIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQD 848
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA P+V+
Sbjct: 849 TLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVR 908
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
D++ L L+N SSFNR NL Y V K + I+YCL R
Sbjct: 909 LDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSGIIYCLSR 968
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
CDE S + G+ +YHAGL D R S DW++ + +V+ ATVAFGMGID+ DVR
Sbjct: 969 KECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVR 1028
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L
Sbjct: 1029 FVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKML 1074
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 775 (277.9 bits), Expect = 5.2e-76, P = 5.2e-76
Identities = 161/360 (44%), Positives = 218/360 (60%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N P H KE ++K+ FG +FR QL+AI A L G DCF LMPTGGGKS+CYQ+P
Sbjct: 600 NFP-HSKE-MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCI 657
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PG+ +V+SPL +L+ +QV L I +L+ +T IY L P ++LLYV
Sbjct: 658 SPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYV 717
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPE + A+ +S ++ ++ R LL IDEAHC+S WGHDFRP Y++L+ LR VP
Sbjct: 718 TPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVP 777
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
++ALTATA P+V+KD++ L + P + SFNR NL YEV K + K
Sbjct: 778 MMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKH 837
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVA 314
+ + I+YCL R CD ++ L G++ AYHAGL D R V WI+ QV+ A
Sbjct: 838 HPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICA 897
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R+ ++
Sbjct: 898 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLI 957
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 759 (272.2 bits), Expect = 1.3e-74, P = 1.3e-74
Identities = 169/447 (37%), Positives = 254/447 (56%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 449 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 508
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 509 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 568
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 569 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 628
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K +K N D C I+YCL R C
Sbjct: 629 QALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDID--KFIKENHFDECGIIYCLSRMDC 686
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR V
Sbjct: 687 EKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVI 746
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERS 391
H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++ + R
Sbjct: 747 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNR- 805
Query: 392 SKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPVLPIGWFLSLVLLYYSFHLLKQIPVSLC 451
++ ++L+ + R++ RY + + FL LV HL ++ + C
Sbjct: 806 ----VASSGRLLETNTENLLRMV--RYCE--NEVECRRFLQLV------HLGEKFDSTNC 851
Query: 452 KNSCD-ACKHPNLLAKYLGELTSAVLQ 477
K +CD C +L+ K + +T +++
Sbjct: 852 KKTCDNCCSSQSLIDKDVTLITRQLVE 878
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 731 (262.4 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 153/369 (41%), Positives = 223/369 (60%)
Query: 2 KKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMP 61
K++ ++++ ++T + P +EK + L+ F +FR QL+ + A ++G+D F +MP
Sbjct: 59 KETETSVEAWNRT--DFPWYEK--IKTALQNKFKLPKFRSLQLETVNATMAGKDIFLVMP 114
Query: 62 TGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIY 121
TGGGKS+CYQ+PA+ G LV+ PLI+LME+Q++ L + GI+ L+++ + + ++
Sbjct: 115 TGGGKSLCYQLPAVCSDGFTLVICPLISLMEDQLMVLDQLGISATLLNASSSKEHVKWVH 174
Query: 122 EDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+ L+LLYVTPE A + FMSKL+K + G L +A+DE HC S WGHDFRP
Sbjct: 175 AQMLDRNSQLKLLYVTPEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPD 234
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKX 240
Y+ L L+ P P++ LTATA V KD L +Q + +SFNRPNL+YEVR+K
Sbjct: 235 YKSLGILKRQFPCAPLIGLTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKP 294
Query: 241 XXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
L NG IVYC + ++++ L GI YHA ++ K +
Sbjct: 295 SNNEDFIEDIVKL-INGRYKGLSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYK 353
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
+ V W +++ QVVVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD +
Sbjct: 354 TKVHKGWAANQIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKAD 413
Query: 358 SLLYYGMDD 366
+LYYG D
Sbjct: 414 CILYYGFGD 422
Score = 39 (18.8 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 451 CKNSCDACKHPNLLAK-----YLGELTSAVLQKNHFSQ 483
C CD C N L K Y +L + Q ++ S+
Sbjct: 471 CNRMCDNCCRENSLEKKDITGYYRDLIKILEQADNMSE 508
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 160/367 (43%), Positives = 225/367 (61%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 5 PFDPERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALL 64
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +V+SPLIAL+++QV L I L+S + Q + ++ DL+ KP +LLY+
Sbjct: 65 AKGITIVISPLIALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRTKLLYI 124
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F LK + +R LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 125 TPEMAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 184
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LK 254
+ALTATA +VQ+DV +L L+ P+ K+ R NLFY+V++K LK
Sbjct: 185 VALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LSA G++ AYHAGL R+ V ++W+
Sbjct: 245 ALGQKADKGLSGCGIVYCRTREACEQLAIELSARGVNAKAYHAGLKAAERTLVQNEWMEG 304
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 305 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPSWCRLYYSRNDR 364
Query: 368 RRMEFIL 374
++ F++
Sbjct: 365 DQVSFLI 371
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 743 (266.6 bits), Expect = 7.8e-74, Sum P(2) = 7.8e-74
Identities = 154/379 (40%), Positives = 229/379 (60%)
Query: 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMP 61
S + +S ++ N P + V L R H F FR QL+A+ A L G+D F LMP
Sbjct: 643 SDIVSKSNLSSKTNGPTYPWSDEV-LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMP 701
Query: 62 TGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117
TGGGKS+CYQ+PA+ K G +V+SPLI+LM++QV L K I SS T + +
Sbjct: 702 TGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQR 761
Query: 118 TKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176
+ + +G L L+Y++PE+ +A+ + ++++ G L + +DEAHC+S+WGHD
Sbjct: 762 RQTFNLFINGL--LDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHD 819
Query: 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236
FRP Y++L + PD+P++ALTATA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV
Sbjct: 820 FRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEV 879
Query: 237 RYKXXXXXXXXXXCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
K C +K+ + I+YC + +C++ SA + GI CA YHAG+
Sbjct: 880 NKKTKNTIFEI--CDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPD 937
Query: 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355
R SV W + QV+ ATVAFGMGID+ DVR V HF +P+++E +YQE+GRAGRD
Sbjct: 938 ERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNY 997
Query: 356 SKSLLYYGMDDRRRMEFIL 374
S + Y+ D R M+ ++
Sbjct: 998 SYCITYFSFRDIRTMQTMI 1016
Score = 42 (19.8 bits), Expect = 7.8e-74, Sum P(2) = 7.8e-74
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 433 LVLLYYSFHLLKQIPVSLCKNSCDACKH 460
LVL Y++ + LC +CD C++
Sbjct: 1051 LVLSYFN----EDFDSKLCHKNCDNCRN 1074
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 154/339 (45%), Positives = 219/339 (64%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L H +L +A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLA--HWNPVL--LAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
++D++ L L +PL+ SSF+RPN+ Y + K V + G + I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRY--VQEQRGKS-GIIYCNS 245
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++ +V
Sbjct: 246 RAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNV 305
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
R V HF+IP+++E++YQE+GRAGRD LP++++L+Y D
Sbjct: 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 745 (267.3 bits), Expect = 8.0e-73, P = 8.0e-73
Identities = 167/427 (39%), Positives = 244/427 (57%)
Query: 2 KKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMP 61
K + M S + P KE L L+ F FR QL+AI LSG+D F LMP
Sbjct: 485 KNHKVLMPSLDDPMLSYPW-SKEVL-GCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMP 542
Query: 62 TGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117
TGGGKS+CYQ+PA+ A G+ LV+SPL++LM++Q+ L++ I LS Q +
Sbjct: 543 TGGGKSLCYQLPAVIEGGASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADER 602
Query: 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHD 176
++ L + ++LLYVTPE A+ G +++ LK ++ R LL + IDEAHC+S WGHD
Sbjct: 603 RQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHD 662
Query: 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236
FRP Y++L LR+ +P +ALTATA V+KD++ +L ++N L LKSSFNRPNLFYE+
Sbjct: 663 FRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEI 722
Query: 237 RYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDK 295
+ K S + I+YCL RT+C++++A L G+ YHAGL
Sbjct: 723 KPKKDLYTELYRFIS--NGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKV 780
Query: 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355
R + ++W S +++VAT+AFGMG+D+ DVR V H + PKS+E +YQE+GRAGRD P
Sbjct: 781 ERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKP 840
Query: 356 SKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDF---------SQVLDVA 406
+ +++Y D + ++ R+R + + F QVL
Sbjct: 841 AHCIMFYSYKDHVTFQKLIMSGDGDAET--KERQRQMLRQVIQFCENKTDCRRKQVLAYF 898
Query: 407 GKRFSRV 413
G+ F +V
Sbjct: 899 GENFDKV 905
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 708 (254.3 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 149/365 (40%), Positives = 208/365 (56%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPT 62
KS + Q + + KE V L F ++FR Q AI +SG+D F +MPT
Sbjct: 63 KSSFSKQDLQHYEDSDFSWSKEVQVNLCNI-FQLSKFRPLQRAAINLSMSGKDLFLVMPT 121
Query: 63 GGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
G GKS+CYQ+PAL G LV++PL++LME+Q++ L+ + L+++ + + +I
Sbjct: 122 GRGKSLCYQLPALCSKGFTLVIAPLVSLMEDQLMYLQSVNVPAVTLNASSSKEDSKRILA 181
Query: 123 DLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181
+ +LLYVTPE A MSKL+K + GLL +A+DE HC S WGHDFRP Y
Sbjct: 182 GMTDKNSPFKLLYVTPEKIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDY 241
Query: 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXX 241
+ L L+ P+VP++ LTATA V KD + LC+Q P+ L + FNRPNL+YEVR+K
Sbjct: 242 KLLGILKRQFPNVPLIGLTATATSNVLKDCQKILCVQEPVTLTAPFNRPNLYYEVRFKDN 301
Query: 242 XXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 301
+ + IVY + + ++ L I YHA + +S V
Sbjct: 302 EDCTDQIASLIRGRYKNQSGIVYVFSQKDAEVVATELQKRDIVAQPYHANMEPSHKSLVH 361
Query: 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
W S + QVVVATVAFGMGID+ DVR V H I KS+E +YQESGRAGRD P+ +++
Sbjct: 362 QRWSSKKIQVVVATVAFGMGIDKADVRFVIHHTISKSIENYYQESGRAGRDDSPADCIVF 421
Query: 362 YGMDD 366
+G D
Sbjct: 422 FGFMD 426
Score = 46 (21.3 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 451 CKNSCDACKHPN 462
C CD C+H N
Sbjct: 475 CNEMCDVCRHGN 486
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 716 (257.1 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 151/358 (42%), Positives = 215/358 (60%)
Query: 27 VKL-LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IV 81
VK+ L+ F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ G +
Sbjct: 688 VKIALKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSVISSGSTRGVT 747
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPE 139
LV+SPL++LM++QV L++ I ++ + + I L S P + LLY+TPE
Sbjct: 748 LVISPLLSLMQDQVSHLRQNKIKAYLINGDTPSEERQWIMSTLSSHNPETHIELLYITPE 807
Query: 140 LTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ + + +++K+ S L V IDEAHC+S WGHDFRP Y+++ + R +P VP++A
Sbjct: 808 MISKSHALTDRIEKLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFRARIPGVPLMA 867
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKAN-G 257
LTATA V+ DV+ +L +Q V SFNRPNL YEVR K +K+
Sbjct: 868 LTATATENVKVDVIHNLRMQGCEVFTQSFNRPNLTYEVRRKGKHAELLDSIADTIKSTYR 927
Query: 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R TC++++ L I YHAGL+ + R+ W + V+VAT+
Sbjct: 928 NKCGIVYCLSRNTCEKVAEALRTNYSIKAEHYHAGLDAETRARTQQRWQAGDVHVIVATI 987
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
AFGMGID+ DVR V H +IPKS+E +YQE+GRAGRD S LY+ D M+ ++
Sbjct: 988 AFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGRRSGCYLYFSHRDVSTMQSMI 1045
Score = 42 (19.8 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLR 31
KS Q SQT +NK + E + + R
Sbjct: 115 KSSSVRQEVSQTPRNKMVEELPSTIPSFR 143
Score = 41 (19.5 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 434 VLLYYSFHLLKQIPVSLCKNSCDACK 459
+L Y+S +Q C SCD CK
Sbjct: 1081 ILAYFSESFKRQD----CNASCDNCK 1102
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 154/367 (41%), Positives = 226/367 (61%)
Query: 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
M++ + PL E+ A V FG+ FRD Q + I+ V G DC +MPTGGGKS
Sbjct: 1 METQLLNTHDDPLSERLAQV------FGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKS 54
Query: 68 MCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127
+CYQ+PAL GI +VVSPLI+LM++QV L + G+ +L+S+Q ++ ++ L G
Sbjct: 55 LCYQLPALMMHGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLG 114
Query: 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
+ L+LLYV+PE T F+ +++ + L++ AIDEAHCIS WGHDFRP Y L L
Sbjct: 115 E--LKLLYVSPERLLTADFIERMQSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQL 168
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXX 247
+ P VP++ALTATA ++++ E L + NP L SSF+RPN+ Y V K
Sbjct: 169 KQLFPHVPMMALTATADQATRQNICERLGI-NPFKLLSSFDRPNIRYTVAEKLNAANQLR 227
Query: 248 XXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
+L+ NG + I+YC R DE++ L+ G AYHAG+ + R V D ++
Sbjct: 228 QF--LLQQNGSS-GIIYCSSRRRVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKD 284
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ +VVATVAFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++ + + D
Sbjct: 285 QIDIVVATVAFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADI 344
Query: 368 RRMEFIL 374
R+ ++
Sbjct: 345 GRVRHLI 351
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 708 (254.3 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 157/344 (45%), Positives = 208/344 (60%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ F +FR Q AI AV+S D ++ TGGGKS+CYQ+PAL G+ LVVSPL
Sbjct: 99 KILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPL 158
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS-LRLLYVTPE-LTATPG 145
I+L+E+Q++ L+ GI L++ T + + K ED + K S RLLYVTPE L +
Sbjct: 159 ISLVEDQILQLRSLGIDSSSLNAN-TSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKK 217
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
M+KL+K S G L L+AIDE HC S WGHDFR Y L+ L+ VPIL LTATA
Sbjct: 218 MMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATS 277
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXX-XXXXCSVLKAN--GDTCAI 262
V DV + L +Q L ++ FNR NL Y+V K +K + G T I
Sbjct: 278 NVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIKRDFAGQT-GI 336
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R C++++ L + GI YHA + RS WIS + QV+VATVAFGMGI
Sbjct: 337 IYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGI 396
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
D+ +VR V H ++PKS+E +YQESGRAGRD P+ +LYY + D
Sbjct: 397 DKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLAD 440
Score = 42 (19.8 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 449 SLCKNSCDACKHPN 462
S C+ CD C++ N
Sbjct: 487 SWCQKQCDTCENGN 500
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 155/340 (45%), Positives = 210/340 (61%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++LR FG+ FR Q I +V++G D F LMPTGGGKS+CYQIPAL + G+ +VVSP
Sbjct: 6 LEVLRQTFGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQIPALVREGVGIVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L G A +ST T K L + + L LLY+ PE T F
Sbjct: 66 LISLMQDQVQALNANGAAAALYNSTLTEAEARKNLARLHNNE--LDLLYIAPERLMTESF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+S+L+++ L LVAIDEAHC+S WGHDFRP Y +L LR Y P VP +ALTATA +
Sbjct: 124 LSRLREVK----LALVAIDEAHCVSQWGHDFRPEYLRLGELREYFPKVPFIALTATADKQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCL 266
++D+++ L L V +SFNRPN+ Y + K KA+ IVYCL
Sbjct: 180 TRQDILQRLRLTKANVHIASFNRPNIRYTLLEKQKSYNQLVNFLKDRKAD---FGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++A L A G S YHAGL R + + ++VAT+AFGMGID+ +
Sbjct: 237 SRNRVEEVAAKLQADGYSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFGMGIDKPN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H+++PK +E +YQE+GRAGRD LPS++LL YG+ D
Sbjct: 297 VRFVVHYDLPKHIEGYYQETGRAGRDGLPSEALLLYGLRD 336
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 143/345 (41%), Positives = 215/345 (62%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSPLIALME 92
FG+ +FR+ Q++AI ++L RD F +PTGGGKS+C+QIP++ G+ V+SPL+ALM+
Sbjct: 474 FGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSIVDHRGVTFVISPLLALMQ 533
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP-SLRLLYVTPELTATPGFMSKLK 151
+QV LK GI E ++S+ + + + + L +G+ L+L+Y+TPE A F+ L
Sbjct: 534 DQVHKLKSLGIPAESINSSGSQRENRDVLDQLLNGETCKLKLIYITPERLAQSEFLHLLD 593
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+++ +G L + +DEAHCIS WGH FRP YR +S+ R+ P VPI A TA+A P V+ D+
Sbjct: 594 QLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPSVPISAFTASATPNVEIDI 653
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS--VLKANGDTCAIVYCLERT 269
SL + NP+ + SSF RPNL Y+VR K + ++ I+YC
Sbjct: 654 KNSLKMVNPITINSSFLRPNLLYQVRQKQSDEESLLKDIYNFISFKYPNSTGIIYCATVR 713
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C+ ++ YLS G+S YHA L++ RS + DW + ++V T+AFGMGID+ D R
Sbjct: 714 ECEIVADYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCTTIAFGMGIDKGDTRF 773
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
V H ++P+SME++YQ++GRAGRD S LL+Y D R + I+
Sbjct: 774 VIHHSMPQSMESYYQQTGRAGRDGKHSDCLLFYNKSDLMRFKHII 818
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 147/342 (42%), Positives = 211/342 (61%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR F +FR QL+ + A ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI
Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFM 147
+LME+Q++ L++ GI+ L+S+ + + ++ ++ + L+L+YVTPE A + FM
Sbjct: 142 SLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFM 201
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S+L+K + G L VA+DE HC S WGHDFRP Y+ L L+ P++ ++ LTATA V
Sbjct: 202 SRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHV 261
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DTCAIVY 264
KD + LC++ L +SFNRPNL+YEVR K + L NG I+Y
Sbjct: 262 LKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANL-INGRYKGKSGIIY 320
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C + ++++ L G+ YHA + + R+ V W ++ QVVVATVAFGMGID+
Sbjct: 321 CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDK 380
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
DVR V H ++ KSME +YQESGRAGRD + +LYYG D
Sbjct: 381 PDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGD 422
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 147/342 (42%), Positives = 211/342 (61%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR F +FR QL+ + A ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI
Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFM 147
+LME+Q++ L++ GI+ L+S+ + + ++ ++ + L+L+YVTPE A + FM
Sbjct: 142 SLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFM 201
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S+L+K + G L VA+DE HC S WGHDFRP Y+ L L+ P++ ++ LTATA V
Sbjct: 202 SRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHV 261
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DTCAIVY 264
KD + LC++ L +SFNRPNL+YEVR K + L NG I+Y
Sbjct: 262 LKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANL-INGRYKGKSGIIY 320
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C + ++++ L G+ YHA + + R+ V W ++ QVVVATVAFGMGID+
Sbjct: 321 CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDK 380
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
DVR V H ++ KSME +YQESGRAGRD + +LYYG D
Sbjct: 381 PDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGD 422
>WB|WBGene00004322 [details] [associations]
symbol:rcq-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
Length = 809
Score = 699 (251.1 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 156/388 (40%), Positives = 223/388 (57%)
Query: 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMP 61
+PLA+ + + + + + E+ V L F H ++R + Q+ AI +L + D + +P
Sbjct: 145 NPLAIGTGERLIRGQDIIERRDKVFLEL--FCHKKYRSRLQMQAINCILKRKCDVYVSLP 202
Query: 62 TGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIY 121
TG GKS+CYQ+PA+ GI +V+SPLIALM++Q+ LK KGI E L+ST T +++I
Sbjct: 203 TGAGKSLCYQLPAVVHGGITVVISPLIALMKDQISSLKRKGIPCETLNSTLTTVERSRIM 262
Query: 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181
+L KP++R+LY+T E AT G L + +R +L + +DEAHC++ WGHDFRP Y
Sbjct: 263 GELAKEKPTIRMLYLTAEGVATDGTKKLLNGLANRDVLRYIVVDEAHCVTQWGHDFRPDY 322
Query: 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE------ 235
L SLR+ P VP +ALTATA K Q D+ L L+NP KS R NLFY+
Sbjct: 323 LTLGSLRDVCPGVPWVALTATANAKAQDDIAFQLKLRNPESFKSGTYRDNLFYDNHMASF 382
Query: 236 ------VRYKXXXXXXXXXXCSVLKANGDT---CAIVYCLERTTCDELSAYLSAGGISCA 286
V K + N T AIVYC R C +++ L GI
Sbjct: 383 ITKCLTVDAKTSSSNLTKHEKAERSQNKKTFTGSAIVYCRSRNECGQVAKMLEIAGIPAM 442
Query: 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346
AYHAGL K R+ V + W+++ VV ATVAFGMGID+ DVR V H++ +++ +YQE+
Sbjct: 443 AYHAGLGKKDRNEVQEKWMNNEIPVVAATVAFGMGIDKPDVRAVIHWSPSQNLAGYYQEA 502
Query: 347 GRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GRAGRD S +YY D+ + F++
Sbjct: 503 GRAGRDGKRSYCRIYYSKQDKNALNFLV 530
Score = 45 (20.9 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 451 CKNSCDACKHP 461
CK +CD C+ P
Sbjct: 591 CKTNCDYCRDP 601
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 151/338 (44%), Positives = 212/338 (62%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ FR Q + + V G D F LMPTGGGKS+CYQIP+L +PG+ +V+SPLI
Sbjct: 8 VLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+E G+A +ST + ++ L G+ L LLYV PE T F+
Sbjct: 68 SLMKDQVDALRENGVAAACYNSTLGERESRRVLARLHGGE--LDLLYVAPERLMTDAFLE 125
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L++I + L AIDEAHC+S WGHDFRP Y +L LR P VP++ALTATA + +
Sbjct: 126 RLREIP----IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQTR 181
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
D++ L L++ + + F+RPN+ Y V K L IVYCL R
Sbjct: 182 GDIVTRLGLRDAEMFVTGFDRPNIRYSVLEKQKPFRQLE---EFLATRPREAGIVYCLSR 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E++ L A G+ AYHAGL D RS V + ++ +VVVATVAFGMGID+ +VR
Sbjct: 239 KRVEEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
V H+++PK++E++YQE+GRAGRD LP+++LL +G D
Sbjct: 299 FVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGD 336
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 145/333 (43%), Positives = 203/333 (60%)
Query: 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97
+FR QL+ I ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++
Sbjct: 91 KFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 150
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSR 156
LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K +
Sbjct: 151 LKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEKAYEA 210
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
G L A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V KDV + LC
Sbjct: 211 GRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHVLKDVQKILC 270
Query: 217 LQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDE 273
+ L +SFNRPNLFYEVR K L NG I+YC + ++
Sbjct: 271 VGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKL-INGRYKGQSGIIYCFSQKDSEQ 329
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L GI YHA + + ++ V W ++ QVVVATVAFGMGID+ DVR V H
Sbjct: 330 ITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHH 389
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++ KSME +YQESGRAGRD + +LYYG D
Sbjct: 390 SMSKSMENYYQESGRAGRDDSRADCILYYGFGD 422
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 151/365 (41%), Positives = 217/365 (59%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A + +DCF LMPTGGGKS+CYQ+PA K G+ +V+SPL++L+++
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q++ L K GI FL+S QT + ++L PS +LLYVTPE + + F+ L+
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLETLR 321
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ +GLL +DEAHC+S WGHDFRP YR+L L+ P VP++ALTATA V +DV
Sbjct: 322 CLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDV 381
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKAN-GDTCAIVYCLERTT 270
++SL + VLK SF+R NL YEV K +L+ D IVYCL ++
Sbjct: 382 LKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQ--ELLRDRFKDQSGIVYCLSKSE 439
Query: 271 CDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C +++ +L+ + YHAG+ K R V W + ++V AT+AFGMGID+ DVR
Sbjct: 440 CVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRF 499
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILXXXXXXXXXXFSTRE 389
V H + K++E++YQESGRAGRD L ++ + Y D R+ +L F +
Sbjct: 500 VIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAM 559
Query: 390 RSSKK 394
+KK
Sbjct: 560 AQAKK 564
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 143/333 (42%), Positives = 204/333 (61%)
Query: 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97
+FR QL+ I +SG++ F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++
Sbjct: 91 KFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 150
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSR 156
LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K +
Sbjct: 151 LKQLGISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEA 210
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
+AIDE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V KD + LC
Sbjct: 211 RRFTRIAIDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLIGLTATATSHVLKDAQKILC 270
Query: 217 LQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDE 273
++ +SFNRPNL+YEVR K L NG I+YC + ++
Sbjct: 271 VEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKL-INGRYKGQSGIIYCFSQKDSEQ 329
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L GI AYHA + + +++V W ++ QVVVATVAFGMGID+ DVR V H
Sbjct: 330 VTVSLQKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVVATVAFGMGIDKPDVRFVIHH 389
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++ KSME +YQESGRAGRD + +LYYG D
Sbjct: 390 SMSKSMENYYQESGRAGRDDTKADCILYYGFGD 422
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 142/333 (42%), Positives = 203/333 (60%)
Query: 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97
+FR QL+ I +SG++ F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++
Sbjct: 91 KFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 150
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSR 156
LK+ GI+ L+++ + ++ ++ + L+L+YVTPE A + FMS+L+K +
Sbjct: 151 LKQLGISATMLNASSPKEHVKWVHAEMVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEA 210
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
+A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V KD + LC
Sbjct: 211 RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATSHVLKDAQKILC 270
Query: 217 LQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDE 273
++ +SFNRPNL+YEVR K L NG I+YC + ++
Sbjct: 271 VEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKL-INGRYKGQSGIIYCFSQKDSEQ 329
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L GI AYHA + + ++ V W ++ QVVVATVAFGMGID+ DVR V H
Sbjct: 330 VTISLQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVATVAFGMGIDKPDVRFVIHH 389
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++ KSME +YQESGRAGRD + + +LYYG D
Sbjct: 390 SMSKSMENYYQESGRAGRDDMKADCILYYGFGD 422
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 151/346 (43%), Positives = 215/346 (62%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L FG+ QFR Q + I+A L+GRD +MPTGGGKS+CYQIPAL G+ LV+SPL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G+A E ++ST + IY + +G+ L+LLYV+PE T F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQ--LKLLYVSPERVLTAEFI 144
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L ++A+DEAHCIS WGHDFRP Y L L+ P+VP++ALTATA
Sbjct: 145 ERLSHLP----LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDAT 200
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
+ D+M+ L L P SF+RPN+ Y + K L+ C I+YC
Sbjct: 201 RHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRY---LETQRGQCGIIYCGS 257
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + L+ L I A+YHAG++ R+ V + + Q+VVATVAFGMGI++ +V
Sbjct: 258 RKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNV 317
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR---RRM 370
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y D RRM
Sbjct: 318 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRM 363
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 151/346 (43%), Positives = 215/346 (62%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L FG+ QFR Q + I+A L+GRD +MPTGGGKS+CYQIPAL G+ LV+SPL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G+A E ++ST + IY + +G+ L+LLYV+PE T F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQ--LKLLYVSPERVLTAEFI 144
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L ++A+DEAHCIS WGHDFRP Y L L+ P+VP++ALTATA
Sbjct: 145 ERLSHLP----LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDAT 200
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
+ D+M+ L L P SF+RPN+ Y + K L+ C I+YC
Sbjct: 201 RHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRY---LETQRGQCGIIYCGS 257
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + L+ L I A+YHAG++ R+ V + + Q+VVATVAFGMGI++ +V
Sbjct: 258 RKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNV 317
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR---RRM 370
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y D RRM
Sbjct: 318 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRM 363
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 141/333 (42%), Positives = 204/333 (61%)
Query: 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97
+FR QL+ I ++G++ F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++
Sbjct: 91 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 150
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSR 156
LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K +
Sbjct: 151 LKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 210
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
+A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V D + LC
Sbjct: 211 RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILC 270
Query: 217 LQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDE 273
++ +SFNRPNL+YEVR K L NG I+YC + ++
Sbjct: 271 IEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKL-INGRYKGQSGIIYCFSQKDSEQ 329
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L GI AYHA L + +++V W ++ QVVVATVAFGMGID+ DVR V H
Sbjct: 330 VTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHH 389
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++ KSME +YQESGRAGRD + + +LYYG D
Sbjct: 390 SMSKSMENYYQESGRAGRDDMKADCILYYGFGD 422
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 140/333 (42%), Positives = 203/333 (60%)
Query: 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97
+FR QL+ I +SG+D F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++
Sbjct: 91 RFRLLQLETINVTMSGKDVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 150
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSR 156
LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K +
Sbjct: 151 LKQLGISATMLNASSSKEHVKWVHAEMINKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEA 210
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
+A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V KD + LC
Sbjct: 211 RRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALMGLTATATSHVLKDAQKILC 270
Query: 217 LQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DTCAIVYCLERTTCDE 273
+ +SFNRPNL+YE+R K L NG I+YC + ++
Sbjct: 271 VGKCFTFTASFNRPNLYYEIRQKPSNTEDVIEDIVKL-INGRYKGQSGIIYCFSQKDSEQ 329
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L GI AYHA + + ++ V W ++ QVVVATVAFGMGID+ DVR + H
Sbjct: 330 VTVSLQKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVVATVAFGMGIDKPDVRFIIHH 389
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++ KS+E +YQESGRAGRD + + +LYYG D
Sbjct: 390 SMSKSIENYYQESGRAGRDDMKADCILYYGFGD 422
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 671 (241.3 bits), Expect = 2.7e-69, Sum P(2) = 2.7e-69
Identities = 150/402 (37%), Positives = 230/402 (57%)
Query: 21 HEKEALVKLLRWHFGHAQFR-DKQLDAIQ-AVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
HE A+ + L+ HFGH++F+ D Q A++ AV +D + MPTG GKS+C+Q+P L
Sbjct: 3 HES-AVHEALKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSE 61
Query: 79 G-IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
I +V SPL+AL+++Q+ L + + + L+S + + + ++ DL + + +L+ LY+T
Sbjct: 62 NQITIVFSPLLALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYIT 121
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PE AT F L+ +H L A+DEAHC+S WGHDFRP Y KL LR+ DV L
Sbjct: 122 PEQAATKFFQDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWL 181
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKXXXXXXXXXXCSVLK- 254
ALTATA+ +V++D+ + L L P+ S SF R NLFY++ YK +
Sbjct: 182 ALTATASREVKEDIYKQLRLHQPVAQFSTPSF-RKNLFYDIVYKNSIEDDFQHLADFARH 240
Query: 255 --ANG----DT------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
N DT C IVYC R + ++ ++ GI AYHAGL R+ V +
Sbjct: 241 CLGNPKEFKDTPKPQRGCGIVYCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQE 300
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
W+ + ++ AT +FGMG+D+ VR V H+++P+++ A+YQESGRAGRD L S LYY
Sbjct: 301 AWMRGDQPIICATNSFGMGVDKPSVRFVIHWDVPQNVAAYYQESGRAGRDGLQSYCRLYY 360
Query: 363 GMDDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQVLD 404
G +D R + F+L +E ++++I F ++ +
Sbjct: 361 GREDVRSIRFLLQNDAHRARGR-GDKELLTERAIKQFEKITE 401
Score = 62 (26.9 bits), Expect = 2.7e-69, Sum P(2) = 2.7e-69
Identities = 23/76 (30%), Positives = 28/76 (36%)
Query: 447 PVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDMTD---GGQYSEFWNR 503
P C CD CK P K L E+ + + F IS QD D GG+
Sbjct: 420 PTPDCSGQCDVCKRPKKADKAL-EMFHRLCMDDAFKS-HISLQDCADLYEGGRPG-IKRA 476
Query: 504 DDEASGSEEDISDCDG 519
E +G E D G
Sbjct: 477 AQEYAGGESGSDDDSG 492
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 687 (246.9 bits), Expect = 9.0e-67, P = 9.0e-67
Identities = 144/342 (42%), Positives = 212/342 (61%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV----LVVSPLIALMENQ 94
FR QL+A+ A LS +D F LMPTGGGKS+CYQ+PAL K G +V+SPLI+LM++Q
Sbjct: 466 FRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGTTVVISPLISLMQDQ 525
Query: 95 VIGLKEKGI-AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K 152
V L K I AG F S K I+ + L ++Y++PE M + K
Sbjct: 526 VQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREG---FLDIVYLSPERANKSNAMQTIMTK 582
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+++ L V IDEAHC+SSWGHDFRP Y+ L ++ P VPI+ALTATA KVQ D++
Sbjct: 583 LYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKVPIMALTATANEKVQMDIL 642
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCD 272
+L +++P++LK SFNR NLFYE++ K + + +G + I+YC + +C+
Sbjct: 643 HNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDYILSRFSGKS-GIIYCHSKQSCE 701
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
S L+ G+ + YHAG++ R ++ W ++ QV+ AT+AFGMGID+ DVR V H
Sbjct: 702 HTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMGIDKPDVRFVIH 761
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
+P+++E +YQE+GRAGRD S+ ++YY D R ++ ++
Sbjct: 762 LYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLI 803
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 687 (246.9 bits), Expect = 9.0e-67, P = 9.0e-67
Identities = 144/342 (42%), Positives = 212/342 (61%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV----LVVSPLIALMENQ 94
FR QL+A+ A LS +D F LMPTGGGKS+CYQ+PAL K G +V+SPLI+LM++Q
Sbjct: 466 FRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGTTVVISPLISLMQDQ 525
Query: 95 VIGLKEKGI-AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K 152
V L K I AG F S K I+ + L ++Y++PE M + K
Sbjct: 526 VQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREG---FLDIVYLSPERANKSNAMQTIMTK 582
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+++ L V IDEAHC+SSWGHDFRP Y+ L ++ P VPI+ALTATA KVQ D++
Sbjct: 583 LYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKVPIMALTATANEKVQMDIL 642
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCD 272
+L +++P++LK SFNR NLFYE++ K + + +G + I+YC + +C+
Sbjct: 643 HNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDYILSRFSGKS-GIIYCHSKQSCE 701
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
S L+ G+ + YHAG++ R ++ W ++ QV+ AT+AFGMGID+ DVR V H
Sbjct: 702 HTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMGIDKPDVRFVIH 761
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
+P+++E +YQE+GRAGRD S+ ++YY D R ++ ++
Sbjct: 762 LYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLI 803
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 685 (246.2 bits), Expect = 2.9e-66, P = 2.9e-66
Identities = 148/336 (44%), Positives = 209/336 (62%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q + +VL RD +M TG GKS+CYQ + GI +V+
Sbjct: 478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 537
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ L+ I+ FL S Q+ V +D+ GK +R++Y+TPE + G
Sbjct: 538 PLISLMEDQVLQLEMSNISSCFLGSAQSKNV----LQDVKDGK--MRVIYMTPEFCSR-G 590
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S L+ + +R + L+AIDEAHCIS WGHDFR +YR L SL+ LP+VPI+ALTATA+P
Sbjct: 591 -ISLLQDLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASP 649
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG-----DTC 260
+++D+ +SL L NP V +SF+RPNL+ +V K + K G +
Sbjct: 650 SIREDITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGA 709
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R T ++++A L GI+C YHAG+ K R V ++ VVATVAFGM
Sbjct: 710 TIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGM 769
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
GI++ D+R V H+ PK ME++YQE GRAGRD LPS
Sbjct: 770 GINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPS 805
>UNIPROTKB|Q6P4G0 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
Length = 964
Score = 669 (240.6 bits), Expect = 1.6e-65, P = 1.6e-65
Identities = 167/454 (36%), Positives = 245/454 (53%)
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A+ K GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++
Sbjct: 40 AVVK-GITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKI 98
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
LY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 99 LYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGH 158
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV 252
P +ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K
Sbjct: 159 APCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDF 218
Query: 253 -LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304
LKA G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW
Sbjct: 219 CLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDW 278
Query: 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364
+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 279 MEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSR 338
Query: 365 DDRRRMEFILXXXXXXXXXXFSTRERSSKKSISDFSQVLDVAGKRFSRVLGNRYWDVWPV 424
+DR ++ F++ + S K +I F ++ F LG R+
Sbjct: 339 NDRDQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVT-----FCEELGCRH------ 386
Query: 425 LPIGWFLSLVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELT-SAVLQKNHF-- 481
+ + Y+ +P C CD C++P + + L L S+ K
Sbjct: 387 -------AAIAKYFG----DALPA--CAKGCDHCQNPTAVRRRLEALERSSSWSKTCIGP 433
Query: 482 SQIFISSQDMTDGGQ--YSEFWNRDDEASGSEED 513
SQ ++ +GG+ Y +F +R DE SG D
Sbjct: 434 SQGNGFDPELYEGGRKGYGDF-SRYDEGSGGSGD 466
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 139/349 (39%), Positives = 211/349 (60%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+LL +FG++ FR Q + I+ VL G+D C+MPTGGGKS+CYQIPAL G LV+SPL
Sbjct: 7 ELLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPL 66
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS-LRLLYVTPELTATPGF 146
I+LM++QV L + GI+ +++S+ ++ T+ + + K +L YV PE + F
Sbjct: 67 ISLMKDQVDTLVQNGISATYINSSISI---TEANQRIQLAKQGHYKLFYVAPERLDSMEF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALTATAAP 205
+ +L I + + ++AIDEAHCIS WGHDFRPSY + + +YLP+ P +LALTATA P
Sbjct: 124 VDQL--IDMK--IPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPLVLALTATATP 179
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYC 265
+V+ D+ +L + + ++F R NL + V ++ N I+Y
Sbjct: 180 QVRDDICNTLGINQENTIMTTFERENLSFSV---IKGQDRNAYLADYIRQNQKESGIIYA 236
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D+L L G+S + YHAG++D R+ + ++ V+VAT AFGMGID+
Sbjct: 237 ATRKVVDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKS 296
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
++R V H+ +PK+ME++YQE+GRAGRD L S +L Y D + F++
Sbjct: 297 NIRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLI 345
>ASPGD|ASPL0000072255 [details] [associations]
symbol:recQ species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
Length = 541
Score = 428 (155.7 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 94/201 (46%), Positives = 126/201 (62%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q D I A + G D F T GKS+CYQ+PA+ G+ +VV PL++LM +QV L+ G
Sbjct: 10 QRDVIAAAVEGHDVFLQASTSFGKSLCYQLPAMTTHGVTVVVCPLLSLMTDQVNALQALG 69
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162
+ ++ST ++ + I EDL SG P +RLLYVTPEL F L+ +H + L +
Sbjct: 70 VPVATINSTVSLAERRVILEDLLSGHPRIRLLYVTPELCQNNTFRRNLQTMHKQRELVRI 129
Query: 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNP 220
AIDEAHCIS WGHDFRP+Y+ LS R+ L P VPI ALTATA +V+ D++ L L NP
Sbjct: 130 AIDEAHCISEWGHDFRPAYKALSWFRHSLTNPPVPISALTATATSQVRTDIINILGL-NP 188
Query: 221 LVLK---SSFNRPNLFYEVRY 238
LK + RPN+ YE+R+
Sbjct: 189 RRLKIFSTPSARPNIHYEIRF 209
Score = 212 (79.7 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 51/125 (40%), Positives = 70/125 (56%)
Query: 262 IVYCLERTTCDELSAYL--SAGGISCAAYHAGLNDKARSSVLDDWISSRKQ--------- 310
IVY R + L+ L S I AYHAGL R V ++WI+ +KQ
Sbjct: 257 IVYVSTRVAAERLAHVLCQSDNRIRAVAYHAGLVAADRVRVQNEWIAPQKQPQQRGPGAK 316
Query: 311 -----VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
++VAT AFGMGID +VR V H++ P++ E F QESGRAGRD + S++YY +
Sbjct: 317 PVTFYIIVATTAFGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGRAAASIVYYSLQ 376
Query: 366 DRRRM 370
+R R+
Sbjct: 377 ERERV 381
Score = 44 (20.5 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 447 PVSLCKNSCDACKH-PNLLAKYLGELTSA 474
P S C +CD CK P L + SA
Sbjct: 479 PSSPCDYACDFCKEGPGELTARKARMASA 507
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 662 (238.1 bits), Expect = 9.4e-64, P = 9.4e-64
Identities = 144/335 (42%), Positives = 207/335 (61%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + I LV+S
Sbjct: 595 INFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVIS 654
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ LK I FL S Q+ V ED+ GK R++Y+TPE + G
Sbjct: 655 PLISLMEDQVLQLKMSNIPACFLGSAQSKNV----LEDIKLGK--YRIVYITPEFCS--G 706
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L+++ + + L+A+DEAHCIS WGHDFR S+R L SL+ LP VPI+ALTATA+
Sbjct: 707 NLFLLQQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASS 766
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG----DTCA 261
+++D++ L L+NP + + F+RPNL+ EVR K V K + +
Sbjct: 767 SIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTSSIWEFEGPT 826
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R T ++++A L ++C AYHAGL+ K+R + ++ Q VVAT+AFGMG
Sbjct: 827 IIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMG 886
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
I++ D+R V H+ PK ME++YQE GRAGRD L S
Sbjct: 887 INKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQS 921
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 662 (238.1 bits), Expect = 1.1e-63, P = 1.1e-63
Identities = 144/335 (42%), Positives = 207/335 (61%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + I LV+S
Sbjct: 627 INFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVIS 686
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ LK I FL S Q+ V ED+ GK R++Y+TPE + G
Sbjct: 687 PLISLMEDQVLQLKMSNIPACFLGSAQSKNV----LEDIKLGK--YRIVYITPEFCS--G 738
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L+++ + + L+A+DEAHCIS WGHDFR S+R L SL+ LP VPI+ALTATA+
Sbjct: 739 NLFLLQQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASS 798
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG----DTCA 261
+++D++ L L+NP + + F+RPNL+ EVR K V K + +
Sbjct: 799 SIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTSSIWEFEGPT 858
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R T ++++A L ++C AYHAGL+ K+R + ++ Q VVAT+AFGMG
Sbjct: 859 IIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMG 918
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
I++ D+R V H+ PK ME++YQE GRAGRD L S
Sbjct: 919 INKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQS 953
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 150/358 (41%), Positives = 210/358 (58%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKP 78
LH ++L L +FG+ +FR Q +AI+ V R + C+MPTGGGKS+CYQIPAL
Sbjct: 2 LHRAQSL---LAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFE 58
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP-SLRLLYVT 137
G +V+SPLI+LM++QV L+E GI +++STQ+ Q +IYE L+ K + +L Y+T
Sbjct: 59 GTTIVISPLISLMKDQVDALEEAGINAAYINSTQSNQ---EIYERLNGLKEGAYKLFYIT 115
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-I 196
PE + F+ L+ I + LVAIDEAHCIS WGHDFRPSYR + L L D P I
Sbjct: 116 PERLTSIEFIRILQGID----VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVI 171
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKAN 256
+ALTATA P+V D+ + L +Q + + F+R NL ++V K ++ N
Sbjct: 172 MALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKV-VKGENKDRFID--EYVQNN 228
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVY R D + L + YH GL D R + +++ QV+VAT
Sbjct: 229 RHEAGIVYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATS 288
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
AFGMGID+ ++R V H IPK ME++YQE+GRAGRD L S+ +L + D F++
Sbjct: 289 AFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLI 346
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 659 (237.0 bits), Expect = 1.4e-63, P = 1.4e-63
Identities = 144/336 (42%), Positives = 205/336 (61%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + I LV+S
Sbjct: 514 INFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVIS 573
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ LK I FL S Q+ V ED+ GK R++Y+TPE + G
Sbjct: 574 PLISLMEDQVLQLKMSNIPACFLGSAQSKNV----LEDIKLGK--YRIVYITPEFCS--G 625
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L+++ + + L+A+DEAHCIS WGHDFR S+R L SL+ LP VPI+ALTATA+
Sbjct: 626 NLFLLQQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASS 685
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTC----- 260
+++D++ L L+NP + + F+RPNL+ EVR K V K
Sbjct: 686 SIREDIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTRNSIWEFEGP 745
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC R T ++++A L ++C AYHAGL+ K+R + ++ Q VVAT+AFGM
Sbjct: 746 TIIYCPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGM 805
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
GI++ D+R V H+ PK ME++YQE GRAGRD L S
Sbjct: 806 GINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQS 841
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 659 (237.0 bits), Expect = 1.5e-63, P = 1.5e-63
Identities = 143/339 (42%), Positives = 203/339 (59%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
E + L+ +FGH+ F+ Q I +VL RD +M TG GKS+CYQ P + G +
Sbjct: 445 EIHIACLKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGGTGI 504
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+ PLI+LME+QV+ L GI+ L S Q+ VK I L R++Y+TPE +
Sbjct: 505 VICPLISLMEDQVLQLTMSGISSCLLGSAQSKDVKDNIKAGL------YRVIYMTPEFCS 558
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G + L+ I + L+A+DEAHCIS WGHDFR S+RKL+SL+ LP VPI+ALTAT
Sbjct: 559 --GNLELLQDIDRTTGIALIAVDEAHCISEWGHDFRISFRKLNSLKKALPSVPIVALTAT 616
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTC-- 260
A+P +++D++ L L+NP V +SF+RPNL+ EV + K + T
Sbjct: 617 ASPSIREDIVNCLNLKNPQVTCTSFDRPNLYLEVGRQSGNTLRDLKQFLTRKGSSSTYEF 676
Query: 261 ---AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC R +++ L+ G++C AYHAG+ + R ++ Q VVATVA
Sbjct: 677 EGPTIIYCPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVA 736
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
FGMGI++ D+R+V H+ PK ME++YQE GRAGRD LP+
Sbjct: 737 FGMGINKADIRMVIHYGAPKEMESYYQEIGRAGRDGLPA 775
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 647 (232.8 bits), Expect = 4.3e-63, Sum P(2) = 4.3e-63
Identities = 143/337 (42%), Positives = 203/337 (60%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVL 82
E V L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + I L
Sbjct: 534 EEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGL 593
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LME+QV+ LK I FL S Q+ V T D+ GK R++YVTPE +
Sbjct: 594 VISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLT----DIKLGK--YRIVYVTPEYCS 647
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G M L+++ + + L+A+DEAHCIS WGHDFR S+RKL SL+ LP VPI+ALTAT
Sbjct: 648 --GNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTAT 705
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DT 259
A+ +++D++ L L+NP + + F+RPNL+ EVR K V ++ +
Sbjct: 706 ASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEG 765
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R +++ L +SC YHAG++ R + ++ Q V+AT+AFG
Sbjct: 766 PTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFG 825
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
MGI++ D+R V H+ PK ME++YQE GRAGRD L S
Sbjct: 826 MGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQS 862
Score = 38 (18.4 bits), Expect = 4.3e-63, Sum P(2) = 4.3e-63
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 435 LLYYSFHLLKQIPVSLCKNSCDACK 459
L++ + +LK P S + SCD K
Sbjct: 1347 LIHMAIEILKHGPDSGLQPSCDVNK 1371
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 646 (232.5 bits), Expect = 2.0e-62, P = 2.0e-62
Identities = 153/398 (38%), Positives = 220/398 (55%)
Query: 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGK 66
++ S S N E ++++L+ +FG FR QL+ I+ +SG D F M TG GK
Sbjct: 270 SITSFSNNNNNNYNDEDNKIIEILKKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGK 329
Query: 67 SMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS 126
S+C+QIP L +VVSPL++L+ +Q + LK GI LSS ++ +K YE +
Sbjct: 330 SLCFQIPPLYLNKTAIVVSPLVSLITDQTLKLKSLGIKVTKLSSD--IKSSSKEYELIFK 387
Query: 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186
G L+Y+TPE + S + + + + L AIDEAHCIS WGH FR SYRKL
Sbjct: 388 GY--YNLVYITPERIINE-YQSIGELVRNEKIC-LFAIDEAHCISQWGHSFRESYRKLQE 443
Query: 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRPNLFYEVRYKXXXXX 244
LRN P VPI+A+TATA ++ D++ +L + N + KSS NRPN++Y+V K
Sbjct: 444 LRNQFPTVPIMAVTATATKSIESDIINNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVS 503
Query: 245 XXXXXC-SVL----KANG--DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
+L K G I+YC +EL+ +L I YH+ L DK R
Sbjct: 504 NDFKMILDILLETRKTIGVVSNSTIIYCTTIQIANELNRFLCDNKIQSNVYHSQLGDKQR 563
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
L +++ ++ +V+VAT+AFGMGID+ DVRL+ ++ KS+E FYQESGRAGRD L S
Sbjct: 564 DETLKNFLFNKTEVIVATIAFGMGIDKHDVRLIINYGASKSVEDFYQESGRAGRDGLQSL 623
Query: 358 SLLYYGMDDRRRMEFILXXXXXXXXXXFSTRERSSKKS 395
SL+ Y + D + F+L S+ S +S
Sbjct: 624 SLIIYSLQDFVKSSFLLRNNNNYNKYSSSSSSSQSSQS 661
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 497 (180.0 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 117/296 (39%), Positives = 166/296 (56%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+K L+ FGH F+ Q IQ++L+ R D +M TG GKS+C+Q P + I +V+S
Sbjct: 432 IKCLKMFFGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKSLCFQFPPVYCQTISVVIS 491
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALME+QV+ L I FL S QT + E + G R++Y+TPE + G
Sbjct: 492 PLIALMEDQVLQLTMSNIPACFLGSAQTKNLN----EQVKRG--DFRVVYMTPEFCS--G 543
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L ++ L+L+A+DEAHCIS WGHDFR +YR+L L+ LP VP LALTATA+P
Sbjct: 544 NIPLLVQLDRTVGLSLIAVDEAHCISQWGHDFRSAYRELGKLKKNLPTVPFLALTATASP 603
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG----DTCA 261
++ D+++SL L NP++ +SF+RPNL+ +V K V K G + A
Sbjct: 604 SIRDDIIKSLHLINPMITCTSFDRPNLYLDVNRKSGDVIQDLKRFLVKKKGGGYEFEGSA 663
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
IVYC + + ++ L I C YHAGL+ K R ++ QV VA
Sbjct: 664 IVYCPSKKEAERVTTALFKLDIPCGVYHAGLSIKQRRETQHQFMRDEIQVHAYDVA 719
Score = 183 (69.5 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LD+ ++S+ VVATVAFGMGI++ D+R V H+ PK ME++YQE GRAGRD LPS +
Sbjct: 759 LDEIMNSQGWCVVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHV 818
Query: 361 YYGMDDRRRMEFIL 374
+ D +FIL
Sbjct: 819 LWMPGDMALNKFIL 832
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 139/341 (40%), Positives = 197/341 (57%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LLR FG FR Q + QAV G + +MPTGGGKS+C+Q+PAL + G+ +V+SPLI
Sbjct: 7 LLRDVFGFDAFRPGQEEIAQAVAEGENVLAIMPTGGGKSLCFQLPALMREGVTVVISPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM +QV L+E G+ L+S T + +++ L++G+ L+LLY+ PE A+ M
Sbjct: 67 ALMRDQVRSLQEAGVEAGALTSGNTPEETEAVWQALEAGR--LKLLYMAPERLASGAAMG 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L++I G+ +L+A+DEAHC+S WGHDFRP Y ++ LR L VP+ A TATA + Q
Sbjct: 125 MLRRI---GV-SLIAVDEAHCVSQWGHDFRPDYLRIGELRRAL-GVPLAAFTATADAETQ 179
Query: 209 KDVMESLCL-QNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
+++ L + P F+RPN+ K + IVYC
Sbjct: 180 AEIVAKLFDGEEPRSFLRGFDRPNIHLAFAAKDSPRRQILDFAGARRGQS---GIVYCGT 236
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + L+ L G S YH G+ + R V + +VVATVAFGMGID+ D+
Sbjct: 237 RAKTETLAQALREDGHSACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKPDI 296
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
R V H ++PKS+EA+YQE GRAGRD P+++L +G DD R
Sbjct: 297 RWVAHADLPKSIEAYYQEIGRAGRDGGPAETLTLFGPDDIR 337
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 629 (226.5 bits), Expect = 1.0e-60, P = 1.0e-60
Identities = 140/357 (39%), Positives = 206/357 (57%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+EAL L FGH FR+KQ D ++ VL G+D F LM TG GKS+CYQ+P+L + +
Sbjct: 213 QEAL-NALNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTV 271
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM +QV L KGI L T Q++ ++ + + +R +Y++PE+
Sbjct: 272 VVSPLISLMNDQVTTLVSKGIDAVKLDGHST-QIE---WDQVANNMHRIRFIYMSPEMVT 327
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LPDVPILALT 200
+ + L ++L+AIDEAHC+S WGHDFR SYR L+ +RN L ++P++ALT
Sbjct: 328 SQKGLELLTSCRKH--ISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALT 385
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTC 260
ATA +V+ DV+ +L L+ PL+ +SF+R NL+ V + G
Sbjct: 386 ATATVRVRDDVIANLRLRKPLITTTSFDRKNLYISVHSSKDMAEDLGLFMKTDEVKGRHF 445
Query: 261 A---IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC + D+++ L G+ A YHAGL R D++ + +VATVA
Sbjct: 446 GGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVA 505
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
FGMGID+ DVR V H+ P ++E++YQE GRAGRD PS +++ D ++F L
Sbjct: 506 FGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKL 562
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 628 (226.1 bits), Expect = 3.5e-60, P = 3.5e-60
Identities = 140/338 (41%), Positives = 202/338 (59%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVL 82
E + L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + GI L
Sbjct: 500 EKQINCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGL 559
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LME+QV+ L+ I FL S Q+ V ED+ GK R++Y+TPE +
Sbjct: 560 VISPLISLMEDQVLQLEISSIPACFLGSAQSKNV----VEDIKLGK--YRIVYLTPEFCS 613
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G + L+++ + + L+A+DEAHCIS WGHDFR S+R L L+ P VPI+ALTAT
Sbjct: 614 --GNLELLRQLEANIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPKVPIVALTAT 671
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG----D 258
A V++D++ L L++P + + F+RPNL+ EV K V K++ +
Sbjct: 672 AGSSVREDIVCCLNLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVCKSSSAWEFE 731
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R ++++A L ++C YHAGL+ R V ++ Q V+ATVAF
Sbjct: 732 GPTIIYCPSRKMTEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAF 791
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
GMGI++ D+R V H+ PK ME++YQE GRAGRD L S
Sbjct: 792 GMGINKADIRQVIHYGAPKEMESYYQEIGRAGRDGLQS 829
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 624 (224.7 bits), Expect = 1.1e-59, P = 1.1e-59
Identities = 140/364 (38%), Positives = 212/364 (58%)
Query: 9 QSTSQTQKNKPLHEKEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGK 66
+ + K+ L E A + L+ +FGH+ F+ Q I ++L R D +M TG GK
Sbjct: 585 EEEEEESKDYLLPEPTAKQINCLKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGK 644
Query: 67 SMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS 126
S+C+Q P ++ GI LV+SPLI+LME+QV+ L+ I FL S Q+ V ED+
Sbjct: 645 SLCFQYPPVSVGGIGLVISPLISLMEDQVLQLEMSNIPACFLGSAQSKNV----LEDIKL 700
Query: 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186
GK R++Y+TPE + G + L+ + + + ++A+DEAHCIS WGHDFR S+R L S
Sbjct: 701 GK--YRIVYLTPEFCS--GNLDLLQHLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGS 756
Query: 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXX 246
L++ LP VPI+ALTAT +++D++ L L++P + + F+RPNL+ EV K
Sbjct: 757 LKSALPLVPIVALTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQD 816
Query: 247 XXXCSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
V K + + I+YC R ++++A L ++C YHAGL+ R V
Sbjct: 817 LKQFLVQKTSSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHH 876
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
++ Q V+AT+AFGMGI++ D+R V H+ PK +E++YQE GRAGRD L S + +
Sbjct: 877 KFMRDEIQCVIATIAFGMGINKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILW 936
Query: 363 GMDD 366
D
Sbjct: 937 APAD 940
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 623 (224.4 bits), Expect = 1.2e-59, P = 1.2e-59
Identities = 136/345 (39%), Positives = 205/345 (59%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q I ++L R D +M TG GKS+C+Q P ++ GI LV+S
Sbjct: 505 INCLKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVIS 564
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ L+ I FL S Q+ V ED+ GK R++Y+TPE + G
Sbjct: 565 PLISLMEDQVLQLEMSNIPACFLGSAQSKNV----LEDIKLGK--YRIVYLTPEFCS--G 616
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L+ + + + ++A+DEAHCIS WGHDFR S+R L SL++ LP VPI+ALTAT
Sbjct: 617 NLDLLQHLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVALTATGTS 676
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG----DTCA 261
+++D++ L L++P + + F+RPNL+ EV K V K + +
Sbjct: 677 SIREDIVRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTSSAWEFEGPT 736
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R ++++A L ++C YHAGL+ R V ++ Q V+AT+AFGMG
Sbjct: 737 IIYCPSRKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMG 796
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
I++ D+R V H+ PK +E++YQE GRAGRD L S + + D
Sbjct: 797 INKADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPAD 841
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 619 (223.0 bits), Expect = 3.2e-59, P = 3.2e-59
Identities = 141/360 (39%), Positives = 210/360 (58%)
Query: 13 QTQKNKPLHEKEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCY 70
Q +++ L E A + L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+
Sbjct: 486 QEEEDHLLPEPNAKQINCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCF 545
Query: 71 QIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130
Q P + I +V+SPLI+LME+QV+ L+ + L S Q+ I D+ GK
Sbjct: 546 QYPPVYTGKIGIVISPLISLMEDQVLQLELSNVPACLLGSAQSKN----ILGDVKLGK-- 599
Query: 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
R++Y+TPE + G + L+++ S + L+A+DEAHCIS WGHDFR S+R L SL+
Sbjct: 600 YRVIYITPEFCS--GNLDLLQQLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTA 657
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC 250
LP VP++AL+ATA+ +++D++ L L++P + + F+RPNL+ EV K
Sbjct: 658 LPLVPVIALSATASSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPF 717
Query: 251 SVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
V KA+ + I+YC R ++++A L ++C YHAG+ R V ++
Sbjct: 718 LVRKASSAWEFEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLR 777
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
Q VVATVAFGMGI++ D+R V H+ PK ME++YQE GRAGRD L S L + D
Sbjct: 778 DEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPAD 837
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 127/338 (37%), Positives = 198/338 (58%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
L +W FG+++FR Q I +L G+D ++PTG GKSMCYQ P L + G VLVVSPL+
Sbjct: 7 LYKW-FGYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQFPGLMREGTVLVVSPLL 65
Query: 89 ALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
+LME+QV LK ++ IA +S +T+ K + + L S K ++V+PE+ +
Sbjct: 66 SLMEDQVTQLKYVVKDRVIA---FNSFRTLNEKREAMKKLSSYK----FIFVSPEMLQSE 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ +LKKIH ++L +DEAHCIS WG+DFRP Y+KL+ + + +LALTATA
Sbjct: 119 LLIRELKKIH----ISLFVVDEAHCISQWGYDFRPDYKKLNVVIENIGSPTVLALTATAT 174
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS-VLKANGDTCAIV 263
V +D+ +SL L+ S +RPN+ +V++ V+ G IV
Sbjct: 175 KGVLQDIADSLNLKGAAEHVYSIDRPNIAMDVQFVETIEEKKEALLEQVMYLQGP--GIV 232
Query: 264 YCLERTTCDELSAYLSAGGISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YC R + L+ YL G++ A YH G+ + R + +++++ Q+V+ T AFGMG+
Sbjct: 233 YCSSRAWTERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFGMGV 292
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
++ + R + HF+ P ++ ++ QE GRAGRD PS ++L
Sbjct: 293 NKANTRYIIHFHYPTNIASYLQEIGRAGRDGEPSIAIL 330
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 566 (204.3 bits), Expect = 3.3e-54, P = 3.3e-54
Identities = 139/347 (40%), Positives = 197/347 (56%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L KLL +G+ FRD QL AI+ +L G ++PTG GKS+CYQIPA+ PGI LV
Sbjct: 255 ENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLV 314
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM +Q+ L I G LSS+Q + T+ L G +++L+V+PE
Sbjct: 315 VSPLVSLMIDQLKHLPSI-IKGGLLSSSQRPEEATETLRKLKEG--IIKVLFVSPERLLN 371
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL--SSLRNYLPDVPILALTA 201
F+S + S ++LV +DEAHC+S W H+FRPSY +L S L + L ILA+TA
Sbjct: 372 VEFLSMFRMSLS---VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTA 428
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA---NGD 258
TA + VM SL + + +++ S R N +E+ ++++
Sbjct: 429 TATTMTLQAVMSSLEIPSTNLIQKSQLRDN--FELSVSLSGANRMKDLLILMESPPYKEI 486
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYC + D +S YL I+ YH+GL K R + + + S++ +VVVATVAF
Sbjct: 487 RSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAF 546
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
GMG+D+ DV V HF++P SME + QE GRAGRD S L+Y D
Sbjct: 547 GMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDND 593
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 382 (139.5 bits), Expect = 3.8e-54, Sum P(2) = 3.8e-54
Identities = 92/220 (41%), Positives = 129/220 (58%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG + R Q +A+ ++ +DC L TG GKS+C+QIPAL +V+V+SPLI
Sbjct: 159 ILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 218
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM +Q + L ++ FL S Q + I E G +++YV PE +
Sbjct: 219 SLMHDQCLKLSRHKVSACFLGSGQ---LDNCIEEKAMQGM--YQIIYVCPETVVR--LIK 271
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NYLP--------DVPILAL 199
L+K+ + L AIDEAHC+S WGHDFRP YRKLS LR N+ DVPI+AL
Sbjct: 272 PLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMAL 331
Query: 200 TATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY 238
TATA VQ+D++ESL L ++ +SF RPNL + V++
Sbjct: 332 TATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKH 371
Score = 214 (80.4 bits), Expect = 3.8e-54, Sum P(2) = 3.8e-54
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+Y R ++ YL G+ AAY+A L K V D+ ++ QVVVAT+AFGMG
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
ID+K+VR + H+ +S+EA+YQE+GRAGRD ++ +LY
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY 600
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 568 (205.0 bits), Expect = 9.7e-54, P = 9.7e-54
Identities = 134/361 (37%), Positives = 198/361 (54%)
Query: 16 KNKPLHEKEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIP 73
K+ L E A + L+ +FGH F+ Q I +VL R D +M TG GKS+C+Q P
Sbjct: 534 KDHLLPEPNAKQINCLKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYP 593
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
+ I +V+SPLI+LME+QV+ L+ I L S Q + G L+
Sbjct: 594 PVYTGKIGIVISPLISLMEDQVLQLEMSNIPACLLGSAQPKNIL---------GDIKLQS 644
Query: 134 LYVTPELTATPGF-MSKLKKIHSRGL---LNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
Y E+ T + M++ + I + L+A+DEAHCIS WGHDFR S+R L SL+
Sbjct: 645 KYKVVEVWFTYQYCMNQFRMIQEARCSVGITLIAVDEAHCISEWGHDFRSSFRTLGSLKT 704
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXX 249
LP VP++AL+ATA+ +++D++ L L++P + + F+RPNL+ EV K
Sbjct: 705 ALPLVPVIALSATASSSIREDIIRCLNLKDPHITCTGFDRPNLYLEVERKTGNILQDLKP 764
Query: 250 CSVLKANG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
V K + + I+YC R ++++ L ++C AYHAG+ R + ++
Sbjct: 765 FLVRKTSSAWEFEGPTIIYCPSRKVTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFL 824
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
Q VVAT+AFGMGI++ D+R V H+ PK ME++YQE GRAGRD L S L +
Sbjct: 825 RDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPA 884
Query: 366 D 366
D
Sbjct: 885 D 885
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 128/351 (36%), Positives = 198/351 (56%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E AL+ L+ FG ++FR Q + I +L+G+ + PTG GKS+CYQ AL P +
Sbjct: 10 EGSALISRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLT 69
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPL+AL+++Q+ L++KGI + ST T + ++ + SG+ L+LL V+ E
Sbjct: 70 LVVSPLLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQ--LKLLMVSVERF 127
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALT 200
F ++ I L+++ +DEAHCIS WGH+FRP Y KL L +P +L LT
Sbjct: 128 KNERFRQFIQSIP----LSMLVVDEAHCISEWGHNFRPDYLKLPDYCREL-SIPLVLLLT 182
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTC 260
ATA KV++D+ ++ ++++ F R NL V + +G
Sbjct: 183 ATATRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFDG--A 240
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVY + T +E+++ L + G AYHAG +D R + D++ + Q+VVAT+AFGM
Sbjct: 241 GIVYVTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGM 300
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
GID+ ++R V H+++PKS+E + QE GRAGRD S + +D +E
Sbjct: 301 GIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVE 351
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 128/351 (36%), Positives = 198/351 (56%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E AL+ L+ FG ++FR Q + I +L+G+ + PTG GKS+CYQ AL P +
Sbjct: 10 EGSALISRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLT 69
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPL+AL+++Q+ L++KGI + ST T + ++ + SG+ L+LL V+ E
Sbjct: 70 LVVSPLLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQ--LKLLMVSVERF 127
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALT 200
F ++ I L+++ +DEAHCIS WGH+FRP Y KL L +P +L LT
Sbjct: 128 KNERFRQFIQSIP----LSMLVVDEAHCISEWGHNFRPDYLKLPDYCREL-SIPLVLLLT 182
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTC 260
ATA KV++D+ ++ ++++ F R NL V + +G
Sbjct: 183 ATATRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFDG--A 240
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVY + T +E+++ L + G AYHAG +D R + D++ + Q+VVAT+AFGM
Sbjct: 241 GIVYVTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGM 300
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
GID+ ++R V H+++PKS+E + QE GRAGRD S + +D +E
Sbjct: 301 GIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVE 351
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 125/349 (35%), Positives = 189/349 (54%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L L FG FR Q I +L G+ + PTG GKS+CYQ+ AL P + L
Sbjct: 10 KECLKASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTL 69
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPL+ALM++Q+ L KGI + ST + + G +++L V+ E
Sbjct: 70 VVSPLLALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDG--DIKVLMVSVERFK 127
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F ++ + ++++ +DEAHCIS WGH+FRP Y KL S L +L LTAT
Sbjct: 128 NERFRQFIESVP----VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLLTAT 183
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAI 262
A KV++D+ +++ ++++ F R NL V ++ A I
Sbjct: 184 ATRKVKQDMAAKFAIRDEHIVQTGFYRSNLDLSV-LPVTQAHKNKQLEQIISAQ-QGAGI 241
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VY + + + ++ YL GI+ AYHAG + RS + D+++ + QV+VAT+AFGMGI
Sbjct: 242 VYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGI 301
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ ++R V H+++PKS+E + QE GRAGRD LPS+ +D +E
Sbjct: 302 DKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTLANLDGLNTVE 350
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 125/349 (35%), Positives = 189/349 (54%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L L FG FR Q I +L G+ + PTG GKS+CYQ+ AL P + L
Sbjct: 10 KECLKASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTL 69
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPL+ALM++Q+ L KGI + ST + + G +++L V+ E
Sbjct: 70 VVSPLLALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDG--DIKVLMVSVERFK 127
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F ++ + ++++ +DEAHCIS WGH+FRP Y KL S L +L LTAT
Sbjct: 128 NERFRQFIESVP----VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLLTAT 183
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAI 262
A KV++D+ +++ ++++ F R NL V ++ A I
Sbjct: 184 ATRKVKQDMAAKFAIRDEHIVQTGFYRSNLDLSV-LPVTQAHKNKQLEQIISAQ-QGAGI 241
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VY + + + ++ YL GI+ AYHAG + RS + D+++ + QV+VAT+AFGMGI
Sbjct: 242 VYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGI 301
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
D+ ++R V H+++PKS+E + QE GRAGRD LPS+ +D +E
Sbjct: 302 DKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTLANLDGLNTVE 350
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 98/207 (47%), Positives = 133/207 (64%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N P H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA
Sbjct: 337 NFP-HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACV 394
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ +V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYV
Sbjct: 395 SSGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYV 454
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPE + A+ +S L+ +++R LL IDEAHC+S WGHDFRP Y++++ LR P VP
Sbjct: 455 TPEKVCASNRLISTLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPSVP 514
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLV 222
++ALTATA P+VQKD++ L + P V
Sbjct: 515 VMALTATANPRVQKDILTQLKILRPQV 541
>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 429 (156.1 bits), Expect = 6.6e-39, P = 6.6e-39
Identities = 134/477 (28%), Positives = 228/477 (47%)
Query: 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89
HFG+ +D Q++A+ A +D F +M TG GKS+CYQIP+L + +V+SPLI+
Sbjct: 46 HFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPLIS 105
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGFM 147
LM++QV L K I+ FL S Q M KI ++ G +++Y +PE L F+
Sbjct: 106 LMKDQVDNLNRKRISSVFLGSGQKMN-NNKILNEIKHG--IYKIVYCSPEYALNNKDVFI 162
Query: 148 SKLKKIHSRGLLNLVAIDE-AHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL-TATAAP 205
+I + + + E H + +R +L + +P + + A T
Sbjct: 163 LLKNRILLIAIDEVHCMSEWGH---DFRPSYR-KLNELRIILKEIPIMCLTATCTKNVQS 218
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LKA--------- 255
+ K++ + LQN L+ +SS N+ NLFY VR K + LK
Sbjct: 219 DILKNL--NFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFI 276
Query: 256 -NGDTCA----IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
N C+ ++Y + C+ + ++L G+ YHA L + + + ++ Q
Sbjct: 277 DNSKICSYNSTLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQ 336
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
++VATVAFGMGID+ D+R + H+ +S+EA+ Q+ GRAGRD ++++L++ ++D ++
Sbjct: 337 IIVATVAFGMGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKI 396
Query: 371 EFILXXXXXXXXXXFSTRERSSKKSISDFSQVLDVA-GKRFSRVLGNRYWDVWPVLP--I 427
+ I+ T + + + F+Q D A R Y+D P+ I
Sbjct: 397 KNIILRENTANNL-IETNFQRVEHIVHIFTQASDYAYSTACRRKKIYEYFDEAPLTSYDI 455
Query: 428 GWF---LSLVLLYYSFHLLKQIPVSLCKNSCDACKHP-NLLAKYLGELTSAVLQKNH 480
F + + YY +K+ + LC CD C + NL+ K G T+ + N+
Sbjct: 456 DIFNDKRNEGICYY----IKKYDIYLC-GKCDNCVYCLNLIKKKNGIKTNKINNNNN 507
>UNIPROTKB|Q8ILG5 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 429 (156.1 bits), Expect = 6.6e-39, P = 6.6e-39
Identities = 134/477 (28%), Positives = 228/477 (47%)
Query: 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89
HFG+ +D Q++A+ A +D F +M TG GKS+CYQIP+L + +V+SPLI+
Sbjct: 46 HFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPLIS 105
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGFM 147
LM++QV L K I+ FL S Q M KI ++ G +++Y +PE L F+
Sbjct: 106 LMKDQVDNLNRKRISSVFLGSGQKMN-NNKILNEIKHG--IYKIVYCSPEYALNNKDVFI 162
Query: 148 SKLKKIHSRGLLNLVAIDE-AHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL-TATAAP 205
+I + + + E H + +R +L + +P + + A T
Sbjct: 163 LLKNRILLIAIDEVHCMSEWGH---DFRPSYR-KLNELRIILKEIPIMCLTATCTKNVQS 218
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV-LKA--------- 255
+ K++ + LQN L+ +SS N+ NLFY VR K + LK
Sbjct: 219 DILKNL--NFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFI 276
Query: 256 -NGDTCA----IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
N C+ ++Y + C+ + ++L G+ YHA L + + + ++ Q
Sbjct: 277 DNSKICSYNSTLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQ 336
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
++VATVAFGMGID+ D+R + H+ +S+EA+ Q+ GRAGRD ++++L++ ++D ++
Sbjct: 337 IIVATVAFGMGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKI 396
Query: 371 EFILXXXXXXXXXXFSTRERSSKKSISDFSQVLDVA-GKRFSRVLGNRYWDVWPVLP--I 427
+ I+ T + + + F+Q D A R Y+D P+ I
Sbjct: 397 KNIILRENTANNL-IETNFQRVEHIVHIFTQASDYAYSTACRRKKIYEYFDEAPLTSYDI 455
Query: 428 GWF---LSLVLLYYSFHLLKQIPVSLCKNSCDACKHP-NLLAKYLGELTSAVLQKNH 480
F + + YY +K+ + LC CD C + NL+ K G T+ + N+
Sbjct: 456 DIFNDKRNEGICYY----IKKYDIYLC-GKCDNCVYCLNLIKKKNGIKTNKINNNNN 507
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 427 (155.4 bits), Expect = 7.9e-39, P = 7.9e-39
Identities = 115/347 (33%), Positives = 169/347 (48%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90
GH FR Q A+ +LSG ++PTG GKS+CYQ+PAL P + LVVSPL++L
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 536
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150
M++QV GL + + S T + + + + + + + + +L +TPE G +
Sbjct: 537 MDDQVSGLPPC-LKAACIHSGMTRKQRESVLQKIRAAQ--VHVLMLTPEALVGAGGLPPA 593
Query: 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQK 209
++ + IDEAHC+S W H+FRP Y ++ LR + L LTATA +
Sbjct: 594 AQLPP---VAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTAS 650
Query: 210 DVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
DV + L + L P NL V + I+YC R
Sbjct: 651 DVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRR 710
Query: 269 TTCDELSAYL----------SAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ ++A L +GG + AYHAG+ + R V ++ + +VVVA
Sbjct: 711 EDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVA 770
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
TVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+ L+
Sbjct: 771 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 817
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 425 (154.7 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 117/347 (33%), Positives = 169/347 (48%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90
GH F Q + +LSG ++PTGGGKS+CYQ+PAL P + LV+SPL++L
Sbjct: 484 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 543
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150
M++QV GL G+ + S + + + + S + +++L ++PE A G + L
Sbjct: 544 MDDQVSGLPP-GLKAACIHSGMSKKQRNSALQKARSAQ--VQVLMLSPEALAGAG-AAGL 599
Query: 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQK 209
+ + IDEAHC+S W H+FRP Y ++ LR + L LTATA
Sbjct: 600 AFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTAL 659
Query: 210 DVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
DV + L + VL+ P NL V + I+YC R
Sbjct: 660 DVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNRR 719
Query: 269 TTCDELSAYLSA----------GGIS----CAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ ++A L GG + AYHAG+ + R V ++ R +VVVA
Sbjct: 720 EDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVA 779
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
TVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+ L+
Sbjct: 780 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 826
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 425 (154.7 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 117/347 (33%), Positives = 169/347 (48%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90
GH F Q + +LSG ++PTGGGKS+CYQ+PAL P + LV+SPL++L
Sbjct: 489 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 548
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150
M++QV GL G+ + S + + + + S + +++L ++PE A G + L
Sbjct: 549 MDDQVSGLPP-GLKAACIHSGMSKKQRNSALQKARSAQ--VQVLMLSPEALAGAG-AAGL 604
Query: 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQK 209
+ + IDEAHC+S W H+FRP Y ++ LR + L LTATA
Sbjct: 605 AFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTAL 664
Query: 210 DVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
DV + L + VL+ P NL V + I+YC R
Sbjct: 665 DVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNRR 724
Query: 269 TTCDELSAYLSA----------GGIS----CAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ ++A L GG + AYHAG+ + R V ++ R +VVVA
Sbjct: 725 EDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVA 784
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
TVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+ L+
Sbjct: 785 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 831
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 425 (154.7 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 117/347 (33%), Positives = 169/347 (48%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90
GH F Q + +LSG ++PTGGGKS+CYQ+PAL P + LV+SPL++L
Sbjct: 507 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 566
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150
M++QV GL G+ + S + + + + S + +++L ++PE A G + L
Sbjct: 567 MDDQVSGLPP-GLKAACIHSGMSKKQRNSALQKARSAQ--VQVLMLSPEALAGAG-AAGL 622
Query: 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQK 209
+ + IDEAHC+S W H+FRP Y ++ LR + L LTATA
Sbjct: 623 AFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTAL 682
Query: 210 DVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
DV + L + VL+ P NL V + I+YC R
Sbjct: 683 DVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNRR 742
Query: 269 TTCDELSAYLSA----------GGIS----CAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ ++A L GG + AYHAG+ + R V ++ R +VVVA
Sbjct: 743 EDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVA 802
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
TVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+ L+
Sbjct: 803 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 849
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 299 (110.3 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 95/290 (32%), Positives = 139/290 (47%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--AKPG--IVLVVSPLIAL 90
G+ FR Q A+ +LSG ++ TG GKS+CYQ+PA AK I LV+SPL++L
Sbjct: 726 GYRSFRSGQEQAVMRILSGLSSLVILSTGMGKSLCYQLPAYMYAKRSRCISLVISPLVSL 785
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM--S 148
M++QV GL K + + S T + E + GK + +L ++PE GF S
Sbjct: 786 MDDQVSGLPPK-LKAVCIHSNMTRTQREAAIEKVKQGK--VHVLLLSPEALVGGGFSGSS 842
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKV 207
L + IDEAHC+S W H+FRP Y +L LR L +L LTATA
Sbjct: 843 CLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTATATRAT 902
Query: 208 QKDVMESLCL--QNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTC---AI 262
+DV L + + + ++ + PNL V ++LK C I
Sbjct: 903 AEDVAHHLGVSPEGGIPVRMASVPPNLHLSV---SMDRNRDQALVTLLKGERFGCLDSVI 959
Query: 263 VYCLERTTCDELSAYL--SAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
VYC R +SA L S G++ +A ++ LN + + D +S RK+
Sbjct: 960 VYCTRREETQRISALLRTSLQGVTVSA-NSHLNSQEQE---DTTVSDRKK 1005
Score = 186 (70.5 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 38/88 (43%), Positives = 60/88 (68%)
Query: 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346
+YHAG++ R V ++++ + ++VVATVAFGMG+D+ DVR + H+N+PK+ E++ QE
Sbjct: 1022 SYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEI 1081
Query: 347 GRAGRDQLPSKSLLYYG-----MDDRRR 369
GRAGRD ++ L+ MD+ RR
Sbjct: 1082 GRAGRDGKDAQCHLFLDPEGQDMDELRR 1109
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 297 (109.6 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 95/290 (32%), Positives = 139/290 (47%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--AKPG--IVLVVSPLIAL 90
G+ FR Q A+ +LSG ++ TG GKS+CYQ+PA AK I LV+SPL++L
Sbjct: 723 GYRSFRSGQEQAVMRILSGFSSLGILSTGMGKSLCYQLPAYMYAKRSRCISLVISPLVSL 782
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM--S 148
M++QV GL K + + S T + E + GK + +L ++PE GF S
Sbjct: 783 MDDQVSGLSPK-LKAVCIHSNMTRTQREAAIEKVKQGK--VHVLLLSPEALVGGGFSGSS 839
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKV 207
L + IDEAHC+S W H+FRP Y +L LR L +L LTATA
Sbjct: 840 CLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTATATRAT 899
Query: 208 QKDVMESLCL--QNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTC---AI 262
+DV L + + + ++ + PNL V ++LK C I
Sbjct: 900 AEDVAHHLGVSPEGGIPVRMASVPPNLHLSV---SMDRNRDQALVTLLKGERFGCLDSVI 956
Query: 263 VYCLERTTCDELSAYL--SAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
VYC R +SA L S G++ +A ++ LN + + D +S RK+
Sbjct: 957 VYCTRREETQRISALLRTSLQGVTVSA-NSHLNSQEQE---DTTVSDRKK 1002
Score = 186 (70.5 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 38/88 (43%), Positives = 60/88 (68%)
Query: 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346
+YHAG++ R V ++++ + ++VVATVAFGMG+D+ DVR + H+N+PK+ E++ QE
Sbjct: 1019 SYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEI 1078
Query: 347 GRAGRDQLPSKSLLYYG-----MDDRRR 369
GRAGRD ++ L+ MD+ RR
Sbjct: 1079 GRAGRDGKDAQCHLFLDPEGQDMDELRR 1106
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 411 (149.7 bits), Expect = 4.1e-37, P = 4.1e-37
Identities = 116/347 (33%), Positives = 166/347 (47%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90
GH F Q + VLSG ++PTG GKS+CYQ+PAL P + LV+SPL +L
Sbjct: 491 GHHAFYPGQERVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYFRRSPCLTLVISPLTSL 550
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150
M++Q+ GL G+ G + S T + + + + + +++L ++PE G + L
Sbjct: 551 MDDQLSGLPP-GLKGACIHSGMTKKQRDSALQKARAAR--VQVLMLSPEALVGAGASTLL 607
Query: 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-RKLSSLRNYLPDVPILALTATAAPKVQK 209
++ + +DEAHC+S W H+FRP Y R +LR+ + L LTATA
Sbjct: 608 SQLPP---VAFACLDEAHCLSQWSHNFRPCYLRVCQTLRDQMGVHCFLGLTATATRSTAL 664
Query: 210 DVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
DV L + VL+ P NL V + I+YC R
Sbjct: 665 DVAWHLGVTEESVLRGPATIPDNLHLSVSSDRDPDQALVTLLRSDRFRALGSVIIYCHRR 724
Query: 269 TTCDELSAYLSA--------GGISCA------AYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ ++A L G A AYHAGL + R V ++ R ++VVA
Sbjct: 725 EDTERVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRVQRAFMEGRLRMVVA 784
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
TVAFGMG+DR DVR V H +P S E + Q GRAGRD P+ L+
Sbjct: 785 TVAFGMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQPAHCHLF 831
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 288 (106.4 bits), Expect = 7.8e-37, Sum P(3) = 7.8e-37
Identities = 82/256 (32%), Positives = 123/256 (48%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPG-IVLVVSPLIA 89
FGH FR Q AI LSG + TG GKS+CYQ+PA K G I LV+SPL++
Sbjct: 866 FGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVISPLVS 925
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT----PG 145
LME+QV G+ + L + QT + KI + + +G+ + +L V+PE G
Sbjct: 926 LMEDQVTGVPHF-LRAHCLHTNQTAPQRMKIQQMIANGE--IDILLVSPEAVVAGERATG 982
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAA 204
F + L+++ + IDEAHC+S W H+FRPSY + LR L +L LTATA
Sbjct: 983 FGAILRQLPP---IAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLGVRTVLGLTATAT 1039
Query: 205 PKVQKDVMESLCLQN-PLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAI 262
+ ++ L + + + S P NL V + + I
Sbjct: 1040 LPTRVSIINHLGISDGERGIISDIPLPDNLVLSVSKDENRDAALLQLLNSERFEPCQSII 1099
Query: 263 VYCLERTTCDELSAYL 278
+YC R C+ ++ ++
Sbjct: 1100 IYCTRRDECERIAGFI 1115
Score = 195 (73.7 bits), Expect = 7.8e-37, Sum P(3) = 7.8e-37
Identities = 36/74 (48%), Positives = 54/74 (72%)
Query: 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 347
YHAG+ R +V ++S+ ++VVAT+AFGMGI++ D+R V H+N+P++ E++ QE G
Sbjct: 1143 YHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIG 1202
Query: 348 RAGRDQLPSKSLLY 361
RAGRD LPS L+
Sbjct: 1203 RAGRDGLPSHCHLF 1216
Score = 42 (19.8 bits), Expect = 7.8e-37, Sum P(3) = 7.8e-37
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 433 LVLLYYSFHLLKQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFISSQDM 491
L+ L Y H L + S C C+A P + GE A++ +N+F+ + QD+
Sbjct: 1447 LIQLQYVAHGLAAVAYSSCGQCCNA-DFP----QDRGEQLKAIV-RNYFANDY--PQDL 1497
>UNIPROTKB|J3KSL7 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
Uniprot:J3KSL7
Length = 198
Score = 318 (117.0 bits), Expect = 3.4e-28, P = 3.4e-28
Identities = 60/133 (45%), Positives = 90/133 (67%)
Query: 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167
L+S + Q + ++ DL+ KP ++LY+TPE+ A+ F L + SR LL+ + +DEA
Sbjct: 4 LNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEA 63
Query: 168 HCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSS 226
HC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV +L L+ P+ + K+
Sbjct: 64 HCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTP 123
Query: 227 FNRPNLFYEVRYK 239
R NLFY+V++K
Sbjct: 124 CFRANLFYDVQFK 136
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 198 (74.8 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345
AAYHAGL R V ++ R +VVVATVAFGMG+D+ DVR V H+N+P++ E++ QE
Sbjct: 173 AAYHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQE 232
Query: 346 SGRAGRDQLPS 356
GRAGRD P+
Sbjct: 233 IGRAGRDGEPA 243
Score = 104 (41.7 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP 192
IDEAHCIS W H+FRPSY +L + LP
Sbjct: 4 IDEAHCISEWSHNFRPSYLRLCKVCEVLP 32
Score = 53 (23.7 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 26/96 (27%), Positives = 38/96 (39%)
Query: 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPNLFYEVRYKXXX 242
S LR+ L LALTATA +DV L + Q+ + ++ + PNL V +
Sbjct: 49 SVLRDRLGIRCFLALTATATVATARDVAAHLGIPQQDGIAVQCAAVPPNLQLSVSVEWDR 108
Query: 243 XXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYL 278
+ IVYC R ++A L
Sbjct: 109 DRALVNLLRSERFVALRSIIVYCTRREDTTRVAALL 144
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 302 (111.4 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 94/304 (30%), Positives = 138/304 (45%)
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A P + LVVSPL++LM++QV L + L S T + + + + + + + + +
Sbjct: 537 AQRSPCLTLVVSPLLSLMDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRAAQVHVLI 595
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLP 192
+ + L + + IDE HC+S W H+FRP Y ++ LR ++
Sbjct: 596 VSPEALVGCGARGPGSLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMG 655
Query: 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCS 251
L LTATA +DV + L + L S N P NL V
Sbjct: 656 VRCFLGLTATATRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQ 715
Query: 252 VLKANGDTCAIVYCL-ERTTCDELSAY---LSAGGIS----CA------AYHAGLNDKAR 297
+ I+YC ER L+ LS G S C AYHAG++ + R
Sbjct: 716 GDRFRTLDSVIIYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQER 775
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
V ++ ++VVATVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+
Sbjct: 776 RRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAH 835
Query: 358 SLLY 361
L+
Sbjct: 836 CHLF 839
Score = 266 (98.7 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 72/210 (34%), Positives = 105/210 (50%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90
G+ FR Q AI +LSG ++PTG GKS+CYQ+PAL P + LVVSPL++L
Sbjct: 494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 553
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-- 148
M++QV L + L S T + + + + + + + + +L V+PE G
Sbjct: 554 MDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRAAQ--VHVLIVSPEALVGCGARGPG 610
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKV 207
L + + IDE HC+S W H+FRP Y ++ LR ++ L LTATA
Sbjct: 611 SLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRST 670
Query: 208 QKDVMESLCLQNPLVLKSSFNRP-NLFYEV 236
+DV + L + L S N P NL V
Sbjct: 671 ARDVAQHLGIAGEFELSGSANIPANLHLSV 700
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 300 (110.7 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 90/304 (29%), Positives = 138/304 (45%)
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A P + LVVSPL++LM++QV L + L S T + + + + + + + + +
Sbjct: 537 AKRSPCLTLVVSPLLSLMDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRAAQVHVLI 595
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLP 192
+ + + L + IDE HC+S W H+FRP Y ++ LR ++
Sbjct: 596 VSPEALVGCGAKGPANLPPAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMG 655
Query: 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCS 251
L LTATA +DV + L + L + S + P NL V
Sbjct: 656 VRCFLGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLHLSVSMDRDSDQALVTLLQ 715
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSA-------------GGISCA-AYHAGLNDKAR 297
+ I+YC R + ++A L G + A AYHAG+ + R
Sbjct: 716 GDRFRTLDSIIIYCARRKDTERVAALLRTCLSTVRDSKPRGRGPETLAEAYHAGMCSQER 775
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
V ++ ++VVATVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+
Sbjct: 776 KRVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAH 835
Query: 358 SLLY 361
L+
Sbjct: 836 CHLF 839
Score = 275 (101.9 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 79/252 (31%), Positives = 119/252 (47%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--AK--PGIVLVVSPLIAL 90
GH FR Q A+ +LSG ++PTG GKS+CYQ+PAL AK P + LVVSPL++L
Sbjct: 494 GHHTFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSL 553
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150
M++QV L + L S T + + + + + + + + +L V+PE G
Sbjct: 554 MDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRAAQ--VHVLIVSPEALVGCGAKGPA 610
Query: 151 KKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKV 207
+ L + IDE HC+S W H+FRP Y ++ LR ++ L LTATA
Sbjct: 611 NLPPAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRST 670
Query: 208 QKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCL 266
+DV + L + L + S + P NL V + I+YC
Sbjct: 671 ARDVAQHLGIAEELEVSGSASIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSIIIYCA 730
Query: 267 ERTTCDELSAYL 278
R + ++A L
Sbjct: 731 RRKDTERVAALL 742
>UNIPROTKB|E2RDN3 [details] [associations]
symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
Length = 1163
Score = 289 (106.8 bits), Expect = 4.7e-22, P = 4.7e-22
Identities = 80/252 (31%), Positives = 122/252 (48%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90
GH FR +Q + VLSG ++PTG GKS+CYQ+PAL P + LV+SPL++L
Sbjct: 490 GHRAFRPRQEQVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISPLLSL 549
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGFMS 148
M++QV L + G + S + + + + + + + ++LL ++PE + A G
Sbjct: 550 MDDQVSSLPPC-LKGVCIHSGMSQKQRESALQKVHAAQ--VQLLVLSPETLVGAGAGMPG 606
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKV 207
L ++ + IDEAHCIS W H+FRP Y ++ LR ++ L LTATA
Sbjct: 607 HLPQLPP---VAFACIDEAHCISQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRST 663
Query: 208 QKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCL 266
+DV L + LVL+ P NL V + + IVYC
Sbjct: 664 ARDVARHLGVAEELVLRGPATVPSNLHLSVSRDRDPDQALVTLLQSDRFRALSSVIVYCH 723
Query: 267 ERTTCDELSAYL 278
R + ++A L
Sbjct: 724 RRGDTERVAALL 735
>ASPGD|ASPL0000073665 [details] [associations]
symbol:AN5092 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
Length = 1571
Score = 288 (106.4 bits), Expect = 9.3e-22, P = 9.3e-22
Identities = 110/388 (28%), Positives = 177/388 (45%)
Query: 2 KKSPLAMQSTS-QTQKNKPLHEKEALVKLLRWHFGHA-QFRDKQLDAIQAVLSGRD-CFC 58
+ +P Q+ Q Q+ + L + + L R A Q R Q A++A+ G
Sbjct: 877 RANPWEEQAVDHQEQQQQQLAQTDMAQALQRMTGRPALQLRGVQAPALKAIQDGASPVVA 936
Query: 59 LMPTGGGKSMCYQIPALAKPG-IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117
+MPTG GKSM + +PA A PG ++V PL++L + + Q + +
Sbjct: 937 IMPTGSGKSMLFMLPAYAAPGGCTIMVVPLLSLR-------------ADLMMRCQALGIS 983
Query: 118 TKIYEDLDSGKP--SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+E S +P ++ VTPE T P F + L + L+ + IDE H I +
Sbjct: 984 CVSWE---SRRPPDEAAIVLVTPESTENPDFHTFLNRQRQMRRLDRIVIDECHVILNDQK 1040
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV--LKSSFNRPNLF 233
DF+P+ +L L + ++ LTA P + + + Q V ++ +R N+
Sbjct: 1041 DFQPAMARLGRLVS--AQTQLVFLTAMLPPIEEARFLRRIKHQRSEVGIHRARTSRRNVA 1098
Query: 234 YE-VRYKXXXXXXXXXXCSVLKAN------------GDTCAIVYCLERTTCDELSAYLSA 280
Y VR + + N GD IVY ++ D +S L
Sbjct: 1099 YRMVRPSLPRGVPRKPHQWLTQPNVRGFIQQRIQQAGDGQVIVYANIKSQVDAISCELG- 1157
Query: 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340
C AYH+ + D+ + V+ + SS+ +++ AT A GMGID D+R V H P+++
Sbjct: 1158 ----CEAYHSAVLDQ--TGVMQRFQSSQTRIIAATSALGMGIDIPDIRCVIHLGRPRTLL 1211
Query: 341 AFYQESGRAGRDQLPSKSLLYY--GMDD 366
+ QESGRAGRD L SK+++ + G DD
Sbjct: 1212 DYSQESGRAGRDGLASKAVIVHPQGWDD 1239
>UNIPROTKB|F8WD97 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI00792775 ProteinModelPortal:F8WD97 SMR:F8WD97
Ensembl:ENST00000396093 ArrayExpress:F8WD97 Bgee:F8WD97
Uniprot:F8WD97
Length = 211
Score = 255 (94.8 bits), Expect = 3.4e-21, P = 3.4e-21
Identities = 49/118 (41%), Positives = 81/118 (68%)
Query: 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97
+FR QL+ I ++G++ F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++
Sbjct: 91 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 150
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIH 154
LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K +
Sbjct: 151 LKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY 208
>POMBASE|SPBCPT2R1.08c [details] [associations]
symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
NextBio:20892152 Uniprot:Q1RKN3
Length = 1919
Score = 274 (101.5 bits), Expect = 4.3e-20, P = 4.3e-20
Identities = 94/356 (26%), Positives = 175/356 (49%)
Query: 30 LRWHFG-HAQFRD-KQLDAIQ-AVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PG-- 79
L ++G A+FR KQ ++ ++L+ + ++PTGGGKS+ + IPAL + PG
Sbjct: 1180 LSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKV 1239
Query: 80 ---IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ LV+ P+++L ++ ++ + EKG+ S T ++ L++ P L +L
Sbjct: 1240 MNMVTLVLVPMMSLRQDMMLRVNEKGLL--VCSGNWTAFKDVRL--TLETQLPDLFIL-- 1293
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
T E T + + + + G L V IDEAH + + G +R + + S L P+
Sbjct: 1294 TYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSGA-WRTALSRASRLSGLY--APL 1350
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKAN 256
L+AT +++ ++ C ++ ++S R N+FY + + +++K
Sbjct: 1351 HLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFL-HPYDNTEFLLDLRTLMKRT 1409
Query: 257 ----GDTCAIVYCLERTTCDELSAYLSAGGISC----AAYHAGLNDKARSSVLDDW--IS 306
GD AI++C + + + L + Y ++D+ R D + +
Sbjct: 1410 KVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNAN 1469
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+ ++++AT AFG+GI+ VRLV H+ +P S + QE+GRAGRD + + L+Y
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFY 1525
>POMBASE|SPAC212.11 [details] [associations]
symbol:tlh1 "RecQ type DNA helicase" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
Length = 2100
Score = 274 (101.5 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 94/356 (26%), Positives = 175/356 (49%)
Query: 30 LRWHFG-HAQFRD-KQLDAIQ-AVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PG-- 79
L ++G A+FR KQ ++ ++L+ + ++PTGGGKS+ + IPAL + PG
Sbjct: 1361 LSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKV 1420
Query: 80 ---IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ LV+ P+++L ++ ++ + EKG+ S T ++ L++ P L +L
Sbjct: 1421 MNMVTLVLVPMMSLRQDMMLRVNEKGLL--VCSGNWTAFKDVRL--TLETQLPDLFIL-- 1474
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
T E T + + + + G L V IDEAH + + G +R + + S L P+
Sbjct: 1475 TYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSGA-WRTALSRASRLSGLY--APL 1531
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKAN 256
L+AT +++ ++ C ++ ++S R N+FY + + +++K
Sbjct: 1532 HLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFYFL-HPYDNTEFLLDLRTLMKRT 1590
Query: 257 ----GDTCAIVYCLERTTCDELSAYLSAGGISC----AAYHAGLNDKARSSVLDDW--IS 306
GD AI++C + + + L + Y ++D+ R D + +
Sbjct: 1591 KVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNAN 1650
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+ ++++AT AFG+GI+ VRLV H+ +P S + QE+GRAGRD + + L+Y
Sbjct: 1651 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFY 1706
>UNIPROTKB|F8WA66 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI01013557 ProteinModelPortal:F8WA66 SMR:F8WA66 PRIDE:F8WA66
Ensembl:ENST00000314748 ArrayExpress:F8WA66 Bgee:F8WA66
Uniprot:F8WA66
Length = 199
Score = 239 (89.2 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 44/105 (41%), Positives = 72/105 (68%)
Query: 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97
+FR QL+ I ++G++ F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++
Sbjct: 91 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 150
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A
Sbjct: 151 LKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIA 195
>UNIPROTKB|Q47ZX4 [details] [associations]
symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 261 (96.9 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 93/372 (25%), Positives = 178/372 (47%)
Query: 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLS-GRDC--FCLMPTGGGKSM 68
Q +K K + AL+ L ++Q+ Q A++ L+ +D F +PTG GK++
Sbjct: 121 QKRKVKKVEMDLALISRLSDQ-NYSQYSSAGQRMAVRVALTCPQDSTLFINLPTGCGKTL 179
Query: 69 -CYQIPALAKP-GIVLVVSPLIALMENQ---VIGLKEKGIAGEFLSSTQTMQV----KTK 119
+ +K + +V+ P + L Q L EK + + Q+ K++
Sbjct: 180 VAHACMLFSKSKALTIVIVPTVGLAIEQGKRAKELLEKADSDSVQNYAWHGQLSDGEKSE 239
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
I +++D+ K ++++ +PE + T + L ++ + + + IDEAH I +WG +FR
Sbjct: 240 IRDNIDNDKQ--KVIFTSPE-SVTGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGSNFRS 296
Query: 180 SYRKLSSLRNYLPDV---PI--LALTATAAPKVQKDVMESLCLQN--PLVLKSSFNRPNL 232
+++ +L L V P + ++AT + C + P+V+ +F RP +
Sbjct: 297 EFQRFGALVASLRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVVNGNFLRPEI 356
Query: 233 FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292
+ + V+ A + L + + D LS +L A G++ A G
Sbjct: 357 SSSYKNEGENNHLQSVVGRVI-ALPKPLILYTTLVQDSID-LSCHLKAIGLNRIALFNGK 414
Query: 293 ND-KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
D ++R +++ W +++AT AFG+G+D+ +V+ V H IP +++ +YQE GRAGR
Sbjct: 415 TDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGR 474
Query: 352 D-QLPSKSLLYY 362
D + + ++YY
Sbjct: 475 DGEAATSEVIYY 486
>TIGR_CMR|CPS_2945 [details] [associations]
symbol:CPS_2945 "putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 261 (96.9 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 93/372 (25%), Positives = 178/372 (47%)
Query: 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLS-GRDC--FCLMPTGGGKSM 68
Q +K K + AL+ L ++Q+ Q A++ L+ +D F +PTG GK++
Sbjct: 121 QKRKVKKVEMDLALISRLSDQ-NYSQYSSAGQRMAVRVALTCPQDSTLFINLPTGCGKTL 179
Query: 69 -CYQIPALAKP-GIVLVVSPLIALMENQ---VIGLKEKGIAGEFLSSTQTMQV----KTK 119
+ +K + +V+ P + L Q L EK + + Q+ K++
Sbjct: 180 VAHACMLFSKSKALTIVIVPTVGLAIEQGKRAKELLEKADSDSVQNYAWHGQLSDGEKSE 239
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
I +++D+ K ++++ +PE + T + L ++ + + + IDEAH I +WG +FR
Sbjct: 240 IRDNIDNDKQ--KVIFTSPE-SVTGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGSNFRS 296
Query: 180 SYRKLSSLRNYLPDV---PI--LALTATAAPKVQKDVMESLCLQN--PLVLKSSFNRPNL 232
+++ +L L V P + ++AT + C + P+V+ +F RP +
Sbjct: 297 EFQRFGALVASLRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVVNGNFLRPEI 356
Query: 233 FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292
+ + V+ A + L + + D LS +L A G++ A G
Sbjct: 357 SSSYKNEGENNHLQSVVGRVI-ALPKPLILYTTLVQDSID-LSCHLKAIGLNRIALFNGK 414
Query: 293 ND-KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
D ++R +++ W +++AT AFG+G+D+ +V+ V H IP +++ +YQE GRAGR
Sbjct: 415 TDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGR 474
Query: 352 D-QLPSKSLLYY 362
D + + ++YY
Sbjct: 475 DGEAATSEVIYY 486
>UNIPROTKB|F1RMJ2 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
Length = 511
Score = 249 (92.7 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 50/98 (51%), Positives = 67/98 (68%)
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIP 336
L G++ AYHAGL+D AR V WI+ QV+ AT+AFGMGID+ DVR V H ++P
Sbjct: 5 LQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLP 64
Query: 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
KS+E +YQESGRAGRD S+ LL+Y D R++ ++
Sbjct: 65 KSVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLI 102
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 211 (79.3 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 81/314 (25%), Positives = 147/314 (46%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI-ALMENQVIGLKEKGIAG 105
+ GRD + TG GK++ Y +PA+ A+P + P++ L + + ++ + A
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 106 EFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNL 161
+F SS++ +KT IY + G P +R L E+ ATPG + + + ++ L +
Sbjct: 194 KFGSSSK---IKTTCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTY 249
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP- 220
+ +DEA + G D P RK+ S + PD L +AT +V++ + L NP
Sbjct: 250 LVLDEADRMLDMGFD--PQIRKIVS--HIRPDRQTLYWSATWPKEVEQ--LSKKFLYNPY 303
Query: 221 -LVLKSSFNRPN-LFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE-RTTCDELSAY 277
+++ SS + N ++ +L+ D I+ L+ + CD+++
Sbjct: 304 KVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQ 363
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
L G + H + R VL ++ S + ++ AT G+D KDV+ V +++ P
Sbjct: 364 LRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPG 423
Query: 338 SMEAFYQESGRAGR 351
S+E + GR GR
Sbjct: 424 SLEDYVHRIGRTGR 437
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 205 (77.2 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 81/325 (24%), Positives = 141/325 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI-ALMENQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +P++ A+P + P++ L + + ++ +
Sbjct: 162 LSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTECS 221
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLV 162
+F S++ T +Y G P +R L E+ ATPG + + + L + +
Sbjct: 222 KFGKSSRIRN--TCVYGGAPKG-PQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYL 278
Query: 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC--LQ-- 218
+DEA + G F P RK+ + PD L +AT +VQ+ + L +Q
Sbjct: 279 VLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVT 334
Query: 219 -NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
L L +S L + S L D +V+ + TCDE++ Y
Sbjct: 335 IGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEK-DNKILVFASTKRTCDEITTY 393
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
L + G A H R VLD++ + ++VAT GID K + V ++++P
Sbjct: 394 LRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPG 453
Query: 338 SMEAFYQESGRAGRDQLPSKSLLYY 362
++E + GR GR ++ ++
Sbjct: 454 NIEDYVHRIGRTGRGGASGTAISFF 478
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 200 (75.5 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 82/355 (23%), Positives = 153/355 (43%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L++ L+ H G A Q A+ L+G+D TG GK++ + +PAL + V+
Sbjct: 10 QRLLQSLK-HMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR---VIS 65
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLD--SGK---PSLRLLYVTP 138
L +I L + +A + S + + T+ Y+ + G+ + L P
Sbjct: 66 TRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQ-YKAISVLGGENFNDQAKALAKEP 124
Query: 139 E-LTATPGFMS---KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
+ ATPG ++ + K + GL L+ +DEA + G F P + ++ ++
Sbjct: 125 HFIVATPGRIADHLEQKNLFLNGL-ELLILDEADRMLDLG--FAPQLKAINEAADHKRRQ 181
Query: 195 PILALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 251
++ +AT ++ +L L+NPL + + ++ +
Sbjct: 182 TLM-FSATLDHSEINEIAAAL-LKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSR 239
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+L I++ R + L+A LSA G + AA L AR+ ++D + ++Q+
Sbjct: 240 LLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+V T G+D +V LV +F++PK E + GR GR ++ G D
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKD 354
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 200 (75.5 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 82/355 (23%), Positives = 153/355 (43%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L++ L+ H G A Q A+ L+G+D TG GK++ + +PAL + V+
Sbjct: 10 QRLLQSLK-HMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR---VIS 65
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLD--SGK---PSLRLLYVTP 138
L +I L + +A + S + + T+ Y+ + G+ + L P
Sbjct: 66 TRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQ-YKAISVLGGENFNDQAKALAKEP 124
Query: 139 E-LTATPGFMS---KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
+ ATPG ++ + K + GL L+ +DEA + G F P + ++ ++
Sbjct: 125 HFIVATPGRIADHLEQKNLFLNGL-ELLILDEADRMLDLG--FAPQLKAINEAADHKRRQ 181
Query: 195 PILALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 251
++ +AT ++ +L L+NPL + + ++ +
Sbjct: 182 TLM-FSATLDHSEINEIAAAL-LKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSR 239
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+L I++ R + L+A LSA G + AA L AR+ ++D + ++Q+
Sbjct: 240 LLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+V T G+D +V LV +F++PK E + GR GR ++ G D
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKD 354
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 196 (74.1 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 91/342 (26%), Positives = 145/342 (42%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH K L++ + + G+ + Q AI L+GRD G GK+ + IPAL K
Sbjct: 54 LHLKRDLLRGI-FEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTD 112
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V ++ L+ + + L+ + E L +QV S K + LY
Sbjct: 113 PTKDVIQVLILVPTRELALQTSQVCKE-LGKYMNVQVMASTGGT--SLKDDIMRLYNPVH 169
Query: 140 -LTATPGFMSKLKKIHSRGLLNL--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
L ATPG + L + + L N + +DEA + S +F+P +L N+LP
Sbjct: 170 ILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLS--QEFQPLVEQLI---NFLPQQRQ 224
Query: 197 LALTATAAPKVQKDVME-------SLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXX 249
+ L + P K E + L L LK + F E R K
Sbjct: 225 ILLFSATFPVTVKSFKEHYLQQAFEINLMEELTLKG-VTQYYAFVEERQKIHCLNTLF-- 281
Query: 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
S L+ N +I++C + L+ ++ G SC HA + R+ V D+ +
Sbjct: 282 -SKLQINQ---SIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGAC 337
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+ +V++ F GID +DV +V +F+ PK E + GR+GR
Sbjct: 338 RNLVSSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGR 379
>UNIPROTKB|J3KRM6 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
Uniprot:J3KRM6
Length = 118
Score = 174 (66.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLI 58
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 194 (73.4 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 88/365 (24%), Positives = 153/365 (41%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL- 75
N P + EA+ KL G + Q L GRD + TG GK++ Y +PAL
Sbjct: 171 NFPDNILEAIAKL-----GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALV 225
Query: 76 ---AKPGIVLVVSPLIALM---ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129
A+P + P++ ++ + ++E+ S ++ T IY G P
Sbjct: 226 HVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS----TCIYGGAPKG-P 280
Query: 130 SLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKL-S 185
+R L E+ ATPG + + + L + + +DEA + G F P RK+ S
Sbjct: 281 QIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMG--FEPQIRKIVS 338
Query: 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXX 244
+R PD L +AT +V+ + L ++ S+ + N +V
Sbjct: 339 QIR---PDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPE 395
Query: 245 XXXXXCSVLKANGDTCAIVYCLE-RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303
++LK D I+ +E + CD+++ L G A H R VL +
Sbjct: 396 KYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAE 455
Query: 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363
+ S R ++ AT G+D KD++ V +++ P ++E + GR GR + ++
Sbjct: 456 FKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFT 515
Query: 364 MDDRR 368
D+ +
Sbjct: 516 HDNAK 520
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 196 (74.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 81/315 (25%), Positives = 139/315 (44%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
+SGRD + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 192 MSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAI 251
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL---- 161
EF S+T T I+ G+ + L + ATPG +L RG +L
Sbjct: 252 EFGSNTHVRN--TCIFGGAPKGQQARDLERGVEIVIATPG---RLIDFLERGTTSLKRCT 306
Query: 162 -VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL--CLQ 218
+ +DEA + G F P RK+ ++ PD +L +AT +V++ E L +Q
Sbjct: 307 YLVLDEADRMLDMG--FEPQIRKI--MQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQ 362
Query: 219 -NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSA 276
N L S N L +V + + + A +T I++ + DE++
Sbjct: 363 VNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITR 422
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
+S G A H + + R VL + + R ++VAT G+D DV+ V +++ P
Sbjct: 423 NISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYP 482
Query: 337 KSMEAFYQESGRAGR 351
+ E + GR GR
Sbjct: 483 SNSEDYVHRIGRTGR 497
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 193 (73.0 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 80/327 (24%), Positives = 140/327 (42%)
Query: 42 KQLDAIQA-----VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALM 91
K+ AIQA LSGRD + TG GK++ Y +PA+ +P + P+ + L
Sbjct: 116 KEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLA 175
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKL 150
+ + + + +A ++ S++ T +Y G P +R L E+ ATPG +
Sbjct: 176 PTRELAQQVQQVAFDYGKSSRIKS--TCVYGGAPKG-PQIRDLERGVEICIATPGRLIDF 232
Query: 151 KKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
++ L + +DEA + G F P RK+ + PD L +AT +V+
Sbjct: 233 LEVGKTNLRRCTYLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVR 288
Query: 209 K---DVMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVY 264
+ D ++ N L+ S N L +V + + A + I++
Sbjct: 289 QLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIF 348
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
+ CDEL+ + G H + R VL ++ S + +++AT G+D
Sbjct: 349 VETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDV 408
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGR 351
+DV+ V +++ P S E + GR R
Sbjct: 409 EDVKFVINYDYPNSSEDYVHRIGRTAR 435
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 191 (72.3 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 75/314 (23%), Positives = 140/314 (44%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI-ALMENQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +P + A+P + P++ L + + ++ +
Sbjct: 148 LSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECS 207
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLV 162
+F S++ T +Y + + +R L E+ ATPG + + +I L + +
Sbjct: 208 KFGHSSRIRN--TCVYGGVPKSQ-QIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYL 264
Query: 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVM-ESLCLQ 218
+DEA + G F P RK+ + PD L +AT +V++ D + + + +Q
Sbjct: 265 VLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQ 320
Query: 219 -NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
L L +S N + EV + + +++ + CD+++ Y
Sbjct: 321 VGSLELSASHNITQIV-EVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKY 379
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
L G A H + + R VL ++ + R ++VAT GID K + V ++++P
Sbjct: 380 LREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPG 439
Query: 338 SMEAFYQESGRAGR 351
++E + GR GR
Sbjct: 440 NIEDYVHRIGRTGR 453
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 191 (72.3 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 78/333 (23%), Positives = 149/333 (44%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALME-NQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +PA+ A+P + P++ ++ + + ++ +
Sbjct: 175 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEIS 234
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLV 162
+F S++ T +Y + G P +R L E+ ATPG + + + L + +
Sbjct: 235 KFGKSSRIRN--TCVYGGVPKG-PQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYL 291
Query: 163 AIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
+DEA + G F P RK+ S +R PD +AT +V++ D + +
Sbjct: 292 VLDEADRMLDMG--FEPQIRKIISQIR---PDRQTCMWSATWPKEVRQLASDFLNNYIQV 346
Query: 219 NPLVLKSSFN-RPNLFYEVRYKXXXXXXXXXXCSVLKAN-GDTCAIVYCLERTTCDELSA 276
N + S N R EV + + N G+ C +V+ + DE++
Sbjct: 347 NIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNKC-LVFTGTKRIADEITR 405
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
+L G + H + R VL+++ + + ++VAT GID +D+ V +++ P
Sbjct: 406 FLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYP 465
Query: 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
+ E + GR GR ++ ++ D+ ++
Sbjct: 466 NNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQ 498
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 195 (73.7 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 93/366 (25%), Positives = 156/366 (42%)
Query: 2 KKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMP 61
K P +QS +Q L EK V LL F + + Q I A+++GRD +
Sbjct: 502 KDCPKPIQSWAQAG----LTEK---VHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIAR 554
Query: 62 TGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117
TG GK++ + +P LA+P +IAL+ + L + I E ++ + ++
Sbjct: 555 TGSGKTLAFLLPMFRHILAQPKSA-PGEGMIALIMSPTRELALQ-IHVECKKFSKVLGLR 612
Query: 118 TK-IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCIS 171
T +Y + L + TPG M + ++R + NL + +DEA +
Sbjct: 613 TACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMF 672
Query: 172 SWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SF 227
G F P + S+R PD + +AT PKV+ +V + + L PL + + S
Sbjct: 673 DMG--FGPQINCIVDSIR---PDRQTIMFSATFPPKVE-NVAKKI-LNKPLEIIAGGRSI 725
Query: 228 NRPNL--FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285
++ F EVR S+ G +++ + T D L LS C
Sbjct: 726 VSSDIEQFVEVRPTETRFRRLIELLSIWYHKGQI--LIFTNRQETTDNLYRQLSNSQYQC 783
Query: 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345
+ H + R + D+ + K +++AT G+D KD+ LV +F+ P +E +
Sbjct: 784 LSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHR 843
Query: 346 SGRAGR 351
GR GR
Sbjct: 844 VGRTGR 849
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 185 (70.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 85/364 (23%), Positives = 158/364 (43%)
Query: 28 KLLRWHFGHAQFRDKQLD--AIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+LLR +G+ + + AI + GRD +G GK+ + I L + +
Sbjct: 40 ELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIREC 99
Query: 86 PLIALMENQVIGLKEKGIA---GEFLSSTQTMQVK-TKIYED---LDSGKPSLRLLYVTP 138
+ L + + + + + GE++ + T + ED L+SG +V
Sbjct: 100 QALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESG------CHV-- 151
Query: 139 ELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
+ TPG + + +K+ + L +DEA + S G F+ + + + PDV +
Sbjct: 152 -VVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRG--FKDQIQDVFKMLP--PDVQV 206
Query: 197 LALTATAAPKVQKDVME-SLC-LQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXX 249
+ L+AT P DV+E S C +++P LV K + FY V K
Sbjct: 207 ILLSATMPP----DVLEVSRCFMRDPVSILVKKEELTLEGIKQFY-VNVKQENWKLGTL- 260
Query: 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
C + T ++++C R D+L+ +S + +A H + + R ++ + S
Sbjct: 261 CDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSS 320
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
+V++ T GID + V LV ++++P + E + GR GR ++ + DDRR
Sbjct: 321 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRI 380
Query: 370 MEFI 373
++ I
Sbjct: 381 LKDI 384
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 188 (71.2 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 89/341 (26%), Positives = 150/341 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL---------AKPG-IVLVVSPLIALMENQVIGLKE 100
+ GRD + TG GK++ Y IP ++ G +LV+SP L ++E
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQ----IQE 248
Query: 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMS---KLKKIHSR 156
+ + +F S++ T +Y G P LR L ++ ATPG ++ ++++I R
Sbjct: 249 EAV--KFGRSSRISC--TCLYGGAPKG-PQLRDLERGADIVVATPGRLNDILEMRRISLR 303
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
+ LV +DEA + G F P RK+ ++ L TAT PK + + L
Sbjct: 304 QISYLV-LDEADRMLDMG--FEPQIRKI--VKEIPTKRQTLMYTATW-PKGVRKIAADL- 356
Query: 217 LQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC--------SVLKANGD-TCAIVYCLE 267
L NP + N N+ V K +L++ + I++C
Sbjct: 357 LVNP----AQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCST 412
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ CD+L+ L+ AA H + R +VL+ + S R V+VAT G+D KD+
Sbjct: 413 KRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDI 471
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
R V +++ P +E + GR GR ++ ++G D +
Sbjct: 472 RAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSK 512
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 187 (70.9 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 82/341 (24%), Positives = 147/341 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP-----LIALMENQVIG 97
Q A +SGRD + TG GK++ Y +PA+ ++SP ++ L + +
Sbjct: 149 QQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA 208
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKL---KKI 153
++ + +F S++ T +Y + G P +R L E+ ATPG + + K
Sbjct: 209 VQIQQECTKFGKSSRIRN--TCVYGGVPRG-PQIRDLIRGVEICIATPGRLLDMLDSNKT 265
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ R + LV +DEA + G F P RK+ + PD + +AT +VQ+ +
Sbjct: 266 NLRRVTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTVMFSATWPKEVQRLARD 320
Query: 214 SL--CLQ---NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
L +Q L L +S N + V VLK + D +++ +
Sbjct: 321 YLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLK-DRDNKVLIFTGTK 379
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D+++ +L G A H R VL+++ + + ++VAT GID K +
Sbjct: 380 RVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGIT 439
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V +++ P + E + GR GR + Y+ D+ ++
Sbjct: 440 HVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQ 480
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 184 (69.8 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 74/354 (20%), Positives = 151/354 (42%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+H KE+L++ + + +G+ Q AI + GRD +G GK+ + I AL
Sbjct: 30 MHLKESLLRGI-YAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVID 88
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+ + + L + + + + + L +Q I + G+ +L Y
Sbjct: 89 TVVRETQALVLSPTRELATQIQSVIMA-LGDYMNVQCHACI-GGTNIGEDIRKLDYGQHV 146
Query: 140 LTATPGFMSKL-KKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
++ TPG ++ + ++ H R + ++ +DEA + + G FR ++ + YLP +
Sbjct: 147 VSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRG--FR---EQIYDVYRYLPPATQV 201
Query: 198 ALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLK 254
+ + P D M + + +P LV + + C +
Sbjct: 202 VVVSATLPYDVLD-MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYD 260
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
T A+++C R D L+ + + ++ H + K R S++ D+ +V+++
Sbjct: 261 TLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLIS 320
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
T + GID + V LV ++++P + E + GR+GR ++ + DD R
Sbjct: 321 TDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVR 374
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 185 (70.2 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 79/322 (24%), Positives = 138/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 117 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 176
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 177 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEAGKT 233
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 234 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 288
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
++ N L+ S N L +V + + A + I++ +
Sbjct: 289 FLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 348
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 349 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 408
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 409 VINYDYPNSSEDYVHRIGRTAR 430
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 186 (70.5 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 78/325 (24%), Positives = 141/325 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG+D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 131 LSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTRELAQQVQQVAA 190
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ +++ T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 191 EYGKASRIKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYL 247
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 248 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQI 302
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + I++ + CD+L+
Sbjct: 303 NVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRR 362
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H N + R VL+++ + +++AT G+D +DV+ V +F+ P
Sbjct: 363 MRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPN 422
Query: 338 SMEAFYQESGRAGRDQLPSKSLLYY 362
+ E + GR R Q + ++
Sbjct: 423 NSEDYIHRIGRTARSQKTGTAYTFF 447
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 181 (68.8 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 89/325 (27%), Positives = 141/325 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN 93
Q ++I LSGRD G GKS Y IP L + +V+V + +AL +
Sbjct: 124 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQAAVVIVPTRELALQVS 183
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 184 QICIQVSKHMGGVKVMATTG---GTNLRDDI------MRLDETVHVVIATPGRILDLIKK 234
Query: 153 -IHSRGLLNLVAIDEAHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKD 210
+ G + ++ +DEA + S DF + LSSL IL +AT VQK
Sbjct: 235 GVAKVGQVQMIVLDEADKLLS--QDFVQMMEEILSSLSKQRQ---ILLYSATFPLSVQK- 288
Query: 211 VMESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCL 266
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 289 FMNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCN 344
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID +
Sbjct: 345 SSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQA 404
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGR 351
V +V +F+ PK E + GR+GR
Sbjct: 405 VNVVINFDFPKLGETYLHRIGRSGR 429
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 183 (69.5 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 79/322 (24%), Positives = 137/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 119 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 178
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 179 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKT 235
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 236 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 290
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 291 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 350
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 351 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 410
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 411 VINYDYPNSSEDYVHRIGRTAR 432
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 183 (69.5 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 79/322 (24%), Positives = 137/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 119 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 178
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 179 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKT 235
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 236 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 290
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 291 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 350
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 351 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 410
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 411 VINYDYPNSSEDYVHRIGRTAR 432
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 183 (69.5 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 79/322 (24%), Positives = 137/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 119 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 178
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 179 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKT 235
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 236 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 290
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 291 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 350
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 351 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 410
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 411 VINYDYPNSSEDYVHRIGRTAR 432
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 183 (69.5 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 82/324 (25%), Positives = 140/324 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 119 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 178
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 179 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKT 235
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 236 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 290
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 291 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 350
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT-VAF-GMGIDRKDV 327
CD+L+ + G H + R VL+++ S + +++AT VA G+G D +DV
Sbjct: 351 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDV 410
Query: 328 RLVCHFNIPKSMEAFYQESGRAGR 351
+ V +++ P S E + GR R
Sbjct: 411 KFVINYDYPNSSEDYVHRIGRTAR 434
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 181 (68.8 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 81/317 (25%), Positives = 137/317 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q ++I L+GRD G GK+ + IP L K V + ++ + + L+
Sbjct: 158 QEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQ 217
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGL--L 159
+ E + ++++ + S K + LY L TPG + L K L
Sbjct: 218 VCKEL---GKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDC 274
Query: 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDVMESLCLQ 218
+++ +DEA + S +F+PS L S +LP+ IL +AT P KD + L
Sbjct: 275 SVLVMDEADKLLS--QEFQPSVEHLIS---FLPESRQILMFSATF-PVTVKDFKDRF-LT 327
Query: 219 NPLVL----KSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDEL 274
NP V+ + + FY + S L+ N +I++C + L
Sbjct: 328 NPYVINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQ---SIIFCNSVNRVELL 384
Query: 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334
+ ++ G SC HA + R+ V D+ + + +V T F GID + V +V +F+
Sbjct: 385 AKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 444
Query: 335 IPKSMEAFYQESGRAGR 351
PK+ E + GR+GR
Sbjct: 445 FPKNAETYLHRVGRSGR 461
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 79/322 (24%), Positives = 137/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 198 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 257
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 258 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKT 314
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 315 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 369
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 370 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 429
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 430 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 489
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 490 VINYDYPNSSEDYVHRIGRTAR 511
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 79/322 (24%), Positives = 137/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 198 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 257
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 258 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKT 314
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 315 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 369
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 370 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 429
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 430 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 489
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 490 VINYDYPNSSEDYVHRIGRTAR 511
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 79/322 (24%), Positives = 137/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 200 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 259
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 260 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKT 316
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 317 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 371
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 372 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 431
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 432 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 491
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 492 VINYDYPNSSEDYVHRIGRTAR 513
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 183 (69.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 79/322 (24%), Positives = 137/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIG 97
Q LSGRD + TG GK++ Y +PA+ +P + P+ + L + +
Sbjct: 200 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA 259
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KI 153
+ + +A ++ ++ T IY G P +R L E+ ATPG + L+ K
Sbjct: 260 QQVQQVADDYGKCSRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLESGKT 316
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 317 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 371
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 372 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 431
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 432 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 491
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 492 VINYDYPNSSEDYVHRIGRTAR 513
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 179 (68.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 77/318 (24%), Positives = 132/318 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQV-IGLKE- 100
Q I AVLSGRD TG GK+ + +P L + ++ V + +E
Sbjct: 36 QAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTREL 95
Query: 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV---TPELTATPGFMSKLKKIHSR 156
+ +A FLS + KI +L++ + L ATPG + L ++
Sbjct: 96 AQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLASNAL 155
Query: 157 GLLNLVA--IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVME 213
L + A +DEA + S G +L + LP L +AT +V+ +
Sbjct: 156 KLTQVSAFVLDEADRMLSLGFT-----EELEQVLAALPRQKQTLLFSATFPEEVR--ALT 208
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDE 273
+ L PL + + + ++K + + A+++ + TC+
Sbjct: 209 TKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNH 268
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
L+ LS GIS +H AR+ VLD + + V++AT GID + +V +F
Sbjct: 269 LAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINF 328
Query: 334 NIPKSMEAFYQESGRAGR 351
++P+S + GR+GR
Sbjct: 329 DLPRSPADYMHRIGRSGR 346
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 179 (68.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 77/318 (24%), Positives = 132/318 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQV-IGLKE- 100
Q I AVLSGRD TG GK+ + +P L + ++ V + +E
Sbjct: 36 QAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTREL 95
Query: 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV---TPELTATPGFMSKLKKIHSR 156
+ +A FLS + KI +L++ + L ATPG + L ++
Sbjct: 96 AQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLASNAL 155
Query: 157 GLLNLVA--IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVME 213
L + A +DEA + S G +L + LP L +AT +V+ +
Sbjct: 156 KLTQVSAFVLDEADRMLSLGFT-----EELEQVLAALPRQKQTLLFSATFPEEVR--ALT 208
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDE 273
+ L PL + + + ++K + + A+++ + TC+
Sbjct: 209 TKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNH 268
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
L+ LS GIS +H AR+ VLD + + V++AT GID + +V +F
Sbjct: 269 LAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINF 328
Query: 334 NIPKSMEAFYQESGRAGR 351
++P+S + GR+GR
Sbjct: 329 DLPRSPADYMHRIGRSGR 346
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 179 (68.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 85/343 (24%), Positives = 142/343 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q++AI L GRD L TG GK+ + +P L ++ L L+ L +
Sbjct: 106 QIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQS--LLACAQRLHTLVLTPTRELAFQ- 162
Query: 103 IAGEFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELTATPG----FMSKLKKIHSRG 157
IA +F + ++ VKT I +D +L L + ATPG M K + R
Sbjct: 163 IAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNLRA 222
Query: 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC 216
L LV +DEA I + DF K+ + +P D +AT KVQK ++
Sbjct: 223 LKYLV-MDEADRILNM--DFESEVDKILKV---IPRDRRTFLFSATMTKKVQK--LQRAA 274
Query: 217 LQNPLV--LKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDEL 274
LQ+P+ + S + + + S+L +V+C +
Sbjct: 275 LQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVFCGTCNNTQRV 334
Query: 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334
+ L GI+ H ++ R L+ + S + V++AT G+D V V +F+
Sbjct: 335 ALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFD 394
Query: 335 IPKSMEAFYQESGRAGRDQLPSKSLLY---YGMDDRRRMEFIL 374
IP + + GR R KS+ + Y ++ +R+E ++
Sbjct: 395 IPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALI 437
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 179 (68.1 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 79/339 (23%), Positives = 148/339 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALME-NQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +PA+ A+P + P++ ++ + + ++ +
Sbjct: 160 LSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEIS 219
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
+F S++ T +Y + G P +R L E+ ATPG + L+ K + R + L
Sbjct: 220 KFGKSSRIRN--TCVYGGVPKG-PQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYL 276
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V+ D ++
Sbjct: 277 V-LDEADRMLDMG--FEPQIRKI--IGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQV 331
Query: 219 NPLVLKSSFN-RPNLFYEVRYKXXXXXXXXXXCSVLKANGDTC--AIVYCLERTTCDELS 275
N L S N R EV + + D+ +++ + DE++
Sbjct: 332 NIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEIT 391
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
+L G + H R VLD + + + ++VAT GID +++ V +++
Sbjct: 392 RFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDY 451
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
P + E + GR GR ++ ++ ++ ++ +L
Sbjct: 452 PNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLL 490
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 178 (67.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 78/314 (24%), Positives = 136/314 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 189 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 245
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 246 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 421 SSEDYIHRIGRTAR 434
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 178 (67.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 78/314 (24%), Positives = 136/314 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 189 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 245
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 246 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 421 SSEDYIHRIGRTAR 434
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 178 (67.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 78/314 (24%), Positives = 136/314 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 189 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 245
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 246 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 421 SSEDYIHRIGRTAR 434
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 178 (67.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 78/314 (24%), Positives = 136/314 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 189 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 245
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 246 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 361 MRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 421 SSEDYIHRIGRTAR 434
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 178 (67.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 78/314 (24%), Positives = 136/314 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 189 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 245
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 246 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 421 SSEDYIHRIGRTAR 434
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 178 (67.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 78/314 (24%), Positives = 136/314 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 189 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 245
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 246 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 421 SSEDYIHRIGRTAR 434
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 178 (67.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 78/314 (24%), Positives = 136/314 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 189 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 245
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 246 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 421 SSEDYIHRIGRTAR 434
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 176 (67.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 83/322 (25%), Positives = 139/322 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQ 94
Q ++I LSGRD G GKS Y IP L + IVLV + +AL +Q
Sbjct: 115 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYIQAIVLVPTRELALQVSQ 174
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + + ATPG + +KK
Sbjct: 175 ISINMSKHLGGIKVMATTG---GTNLRDDI------MRLDEIVHVIIATPGRILDLIKKG 225
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDV 211
+ + + +DEA + S DF + + ++LP IL +AT VQK +
Sbjct: 226 VAKVDKVQMAVMDEADKLLS--QDF---VVLIEDIISFLPKKRQILLYSATFPISVQKFM 280
Query: 212 MESLCLQNPLVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ L + L + +Y + S L+ N +I++C
Sbjct: 281 TKHLQKPYEINLMDELTLKGITQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNSTQ 337
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ L+ ++ G SC HA + + R+ V D+ + + +V T F GID + V +
Sbjct: 338 RVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNV 397
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +F+ PK+ E + GR+GR
Sbjct: 398 VINFDFPKNAETYLHRIGRSGR 419
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 177 (67.4 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 76/332 (22%), Positives = 143/332 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q AI +L G D L TG GK+ Y +P + K ++ +P + + +E
Sbjct: 28 QAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQK----MLSTPRGRVRTLVLAPTRELA 83
Query: 103 --IAGEFLSSTQTMQVKT-KIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK--IHSR 156
IA F S Q +++ IY ++ + RL + A PG + + + I
Sbjct: 84 CQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRGTIDIC 143
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
G+ L+ IDEA + G F+P + + L+ + L +AT P+V+K +E+
Sbjct: 144 GVETLI-IDEADRMFDMG--FQPDIQSI--LKCLVQPHQTLLFSATMPPEVRKLTLETQT 198
Query: 217 LQNPLVLKSSFNRP--NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDEL 274
NP+ ++ P ++ + V Y +LK +++ + + L
Sbjct: 199 --NPVTIQIGTQAPASSVSHSV-YPVKNHQKTPLLIEILKTTETKSVLIFARTKYGAENL 255
Query: 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334
+ +S G + A+ L+ R +V++ + +++VAT G+D + V +++
Sbjct: 256 ADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHISHVINYD 315
Query: 335 IPKSMEAFYQESGRAGRDQLPSKSL-LYYGMD 365
+P + E + GR GR ++L L G D
Sbjct: 316 MPDTPEDYTHRIGRTGRFDRTGQALSLVTGRD 347
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 178 (67.7 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 78/314 (24%), Positives = 136/314 (43%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 186 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 245
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E+ ATPG + L+ K + R L
Sbjct: 246 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 302
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 303 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 357
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 358 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 417
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 418 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 477
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 478 SSEDYIHRIGRTAR 491
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 175 (66.7 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 91/347 (26%), Positives = 143/347 (41%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--------- 75
AL K L H R +QL AI A+L+GRD L TG GK+ + +P L
Sbjct: 27 ALRKALPTRLKHPT-RVQQL-AIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAV 84
Query: 76 -AKPGIVLVVSPL-IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG---KPS 130
V PL + L+ + + L+ A L+S + I + L G +
Sbjct: 85 QTTAKSVPAAKPLALVLVPTRELALQVSE-ALHALASQLSTSAPLNI-QLLCGGVALEQQ 142
Query: 131 LRLLYVTPELT-ATPGFMSKL-KKIH-SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
L L P+L ATPG + L + H S + + +DEA + G F P +KL ++
Sbjct: 143 LADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMG--FWPDMQKLMAM 200
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKXXXXX 244
+P L + P+ + L +PL +++S R + E+ Y
Sbjct: 201 ---MPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGS 256
Query: 245 XXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304
++LK +V+ R D ++ L GI+ AA H + RS L D+
Sbjct: 257 KAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADF 316
Query: 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+ R QV+VAT GI + +V + ++P S + GR R
Sbjct: 317 KADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTAR 363
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 175 (66.7 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 91/347 (26%), Positives = 143/347 (41%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--------- 75
AL K L H R +QL AI A+L+GRD L TG GK+ + +P L
Sbjct: 27 ALRKALPTRLKHPT-RVQQL-AIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAV 84
Query: 76 -AKPGIVLVVSPL-IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG---KPS 130
V PL + L+ + + L+ A L+S + I + L G +
Sbjct: 85 QTTAKSVPAAKPLALVLVPTRELALQVSE-ALHALASQLSTSAPLNI-QLLCGGVALEQQ 142
Query: 131 LRLLYVTPELT-ATPGFMSKL-KKIH-SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
L L P+L ATPG + L + H S + + +DEA + G F P +KL ++
Sbjct: 143 LADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMG--FWPDMQKLMAM 200
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKXXXXX 244
+P L + P+ + L +PL +++S R + E+ Y
Sbjct: 201 ---MPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGS 256
Query: 245 XXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304
++LK +V+ R D ++ L GI+ AA H + RS L D+
Sbjct: 257 KAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADF 316
Query: 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+ R QV+VAT GI + +V + ++P S + GR R
Sbjct: 317 KADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTAR 363
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 173 (66.0 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 59/235 (25%), Positives = 103/235 (43%)
Query: 140 LTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
+ ATPG +L G +NL V IDEA + G F RK+ + N +
Sbjct: 481 IVATPG---RLLDFLENGNINLLKCIYVVIDEADRLLDMG--FEKQLRKIMTQVN--KNK 533
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVL- 253
+L LTAT +V+K + C +P+ ++ N + +L
Sbjct: 534 QLLFLTATWPEQVRK-LAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLD 592
Query: 254 --KANGDTCAI-VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
K N + I ++C + CD L L + + H + R +L+++ + R
Sbjct: 593 WLKENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCN 652
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
++VAT G+D K++ +V +++IP ++E + GR GR KS+L++ D
Sbjct: 653 ILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYD 707
Score = 52 (23.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIP 73
LSG+D + TG GK++ + +P
Sbjct: 322 LSGKDLIGVAETGSGKTLAFVLP 344
Score = 47 (21.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 64 GGKSMCYQIPALAKPGIVLVVSP--LIALMENQVIGL 98
GG YQI L K ++V +P L+ +EN I L
Sbjct: 463 GGVPKYYQINNLKKGADIIVATPGRLLDFLENGNINL 499
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 175 (66.7 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 89/346 (25%), Positives = 150/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI------VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L + + +V+ P +AL +Q
Sbjct: 122 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQ 181
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 182 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 232
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA + S DF + + + LP + IL +AT VQK +
Sbjct: 233 VAKVDHIQMIVLDEADKLLS--QDFM---QIMEDIIMTLPKNRQILLYSATFPLSVQKFM 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
+L LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 --TLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 342
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 343 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 402
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 403 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 448
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 176 (67.0 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 78/321 (24%), Positives = 132/321 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q+ I L GRD TG GK+ + +P + + + + L + + ++ +
Sbjct: 218 QMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQSKAPSALVLTPTRELAIQIER 277
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSL-RLLYVTPELTATPGFMSKLKKIHS--RGLL 159
A E + M +T + P L RL + ATPG + + K S G +
Sbjct: 278 QAKELMGGLPRM--RTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMKQSSVDLGNI 335
Query: 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 219
+V +DEA + G F+ L L N D + ++AT ++++ + S L +
Sbjct: 336 KIVVVDEADTMLKMG--FQEQV--LDVLENVPQDCQTILVSATIPTRIEQ--LASRLLHD 389
Query: 220 PL-VLKSSFNRPN-------LFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTC 271
P+ VL N P L+ E K + K V C +
Sbjct: 390 PVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILNDKKLFKP--PVLVFVDC--KLGA 445
Query: 272 DELS-AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D LS A G+ + H+ + R ++L+ + VVV+T G G+D V+LV
Sbjct: 446 DLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLV 505
Query: 331 CHFNIPKSMEAFYQESGRAGR 351
+F++P SM+ + + GR GR
Sbjct: 506 VNFDMPSSMDEYVHQVGRVGR 526
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 173 (66.0 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 74/340 (21%), Positives = 143/340 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIG 97
Q +AI +L G + PTG GK+ Y +P L K VL+V+P + +
Sbjct: 29 QKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTP------TRELA 82
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG-FMSKL-KKIH 154
L+ +A E + ++V+ + + +R L E + TPG + + +K
Sbjct: 83 LQ---VADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGRKTF 139
Query: 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVME 213
+ +V +DEA + G + ++ N L + L +AT ++ + +
Sbjct: 140 PAAEIKIVILDEADEMLDMGF-----IDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKK 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDE 273
L + L +V Y+ S+L + AIV+C + DE
Sbjct: 195 FLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDE 254
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ L+ G + H ++ + R+ + + + + +++VAT G+D DV V +F
Sbjct: 255 VVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINF 314
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+IP++ E++ GR GR K++ +R+ ++ I
Sbjct: 315 DIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAI 354
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 173 (66.0 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 74/340 (21%), Positives = 143/340 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIG 97
Q +AI +L G + PTG GK+ Y +P L K VL+V+P + +
Sbjct: 29 QKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTP------TRELA 82
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG-FMSKL-KKIH 154
L+ +A E + ++V+ + + +R L E + TPG + + +K
Sbjct: 83 LQ---VADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGRKTF 139
Query: 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVME 213
+ +V +DEA + G + ++ N L + L +AT ++ + +
Sbjct: 140 PAAEIKIVILDEADEMLDMGF-----IDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKK 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDE 273
L + L +V Y+ S+L + AIV+C + DE
Sbjct: 195 FLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDE 254
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ L+ G + H ++ + R+ + + + + +++VAT G+D DV V +F
Sbjct: 255 VVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINF 314
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+IP++ E++ GR GR K++ +R+ ++ I
Sbjct: 315 DIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAI 354
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 178 (67.7 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 77/337 (22%), Positives = 142/337 (42%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +PA+ +P I+ P+ + L + + + + +
Sbjct: 272 LSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVR 331
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGL--LNLV 162
++ + T I+ S P R L E + ATPG + + + L +
Sbjct: 332 DYGHLCKPEIRHTCIFGG-SSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYL 390
Query: 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQN 219
+DEA + G F P RK+ + PD ++ +AT +VQ D + N
Sbjct: 391 VLDEADRMLDMG--FEPQIRKI--IEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQIN 446
Query: 220 PLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC-----SVLKANGDTC--AIVYCLERTTCD 272
+ S N N+ V C S +K +G+ IV+ + +
Sbjct: 447 IGSMNLSANH-NIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVE 505
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
++ + A G + + H R SVL D+ + + +++AT G+D +D++ V +
Sbjct: 506 DILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVIN 565
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
++ P S E + GR GR Q + ++ D+ ++
Sbjct: 566 YDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 602
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 175 (66.7 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 78/315 (24%), Positives = 139/315 (44%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 117 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 176
Query: 106 EFLSSTQTMQVK-TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLN 160
E+ ++ ++K T IY G P +R L E+ ATPG + L+ K + R
Sbjct: 177 EY---SRACRLKSTCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY 232
Query: 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCL 217
LV +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 233 LV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVH 287
Query: 218 QNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSA 276
N L+ S N L +V + + + + IV+ + CD+L+
Sbjct: 288 INIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTR 347
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 348 KMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYP 407
Query: 337 KSMEAFYQESGRAGR 351
S E + GR R
Sbjct: 408 NSSEDYIHRIGRTAR 422
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 175 (66.7 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 78/315 (24%), Positives = 139/315 (44%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 125 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 184
Query: 106 EFLSSTQTMQVK-TKIYEDLDSGKPSLRLLYVTPELT-ATPG-FMSKLK--KIHSRGLLN 160
E+ ++ ++K T IY G P +R L E+ ATPG + L+ K + R
Sbjct: 185 EY---SRACRLKSTCIYGGAPKG-PQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY 240
Query: 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCL 217
LV +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 241 LV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVH 295
Query: 218 QNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSA 276
N L+ S N L +V + + + + IV+ + CD+L+
Sbjct: 296 INIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTR 355
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 356 KMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYP 415
Query: 337 KSMEAFYQESGRAGR 351
S E + GR R
Sbjct: 416 NSSEDYIHRIGRTAR 430
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 175 (66.7 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 78/314 (24%), Positives = 135/314 (42%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
LSG D + TG GK++ Y +PA+ +P + P+ + L + + + + +A
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG-FMSKLK--KIHSRGLLNL 161
E+ + + T IY G P +R L E ATPG + L+ K + R L
Sbjct: 189 EYCRACRLKS--TCIYGGAPKG-PQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYL 245
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DVMESLCLQ 218
V +DEA + G F P RK+ + PD L +AT +V++ D ++
Sbjct: 246 V-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query: 219 NPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAY 277
N L+ S N L +V + + + + IV+ + CDEL+
Sbjct: 301 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK 360
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
+ G H + + R VL+++ + +++AT G+D +DV+ V +++ P
Sbjct: 361 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN 420
Query: 338 SMEAFYQESGRAGR 351
S E + GR R
Sbjct: 421 SSEDYIHRIGRTAR 434
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 173 (66.0 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 92/346 (26%), Positives = 150/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI-VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L K I +V+ P +AL +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 183 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 233
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA+ + S DF + + + LP + IL +AT VQK
Sbjct: 234 VAKVEHVQMIVLDEANKLLS--QDF---VQIMEDIILTLPKNRQILLYSATFPLSVQK-F 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 MNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 343
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 344 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 403
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 404 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 172 (65.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 92/346 (26%), Positives = 149/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI-VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L K I +V+ P +AL +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 183 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 233
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA + S DF + + + LP + IL +AT VQK
Sbjct: 234 VAKVDHVQMIVLDEADKLLS--QDF---VQIMEDIILTLPKNRQILLYSATFPLSVQK-F 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 MNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 343
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 344 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 403
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 404 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 172 (65.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 92/346 (26%), Positives = 149/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI-VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L K I +V+ P +AL +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 183 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 233
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA + S DF + + + LP + IL +AT VQK
Sbjct: 234 VAKVDHVQMIVLDEADKLLS--QDF---VQIMEDIILTLPKNRQILLYSATFPLSVQK-F 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 MNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 343
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 344 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 403
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 404 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 172 (65.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 92/346 (26%), Positives = 149/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI-VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L K I +V+ P +AL +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 183 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 233
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA + S DF + + + LP + IL +AT VQK
Sbjct: 234 VAKVDHVQMIVLDEADKLLS--QDF---VQIMEDIILTLPKNRQILLYSATFPLSVQK-F 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 MNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 343
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 344 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 403
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 404 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 172 (65.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 92/346 (26%), Positives = 149/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI-VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L K I +V+ P +AL +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 183 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 233
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA + S DF + + + LP + IL +AT VQK
Sbjct: 234 VAKVDHVQMIVLDEADKLLS--QDF---VQIMEDIILTLPKNRQILLYSATFPLSVQK-F 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 MNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 343
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 344 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 403
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 404 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 172 (65.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 92/346 (26%), Positives = 149/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI-VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L K I +V+ P +AL +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 183 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 233
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA + S DF + + + LP + IL +AT VQK
Sbjct: 234 VAKVDHVQMIVLDEADKLLS--QDF---VQIMEDIILTLPKNRQILLYSATFPLSVQK-F 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 MNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 343
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 344 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 403
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 404 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 172 (65.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 92/346 (26%), Positives = 149/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI-VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L K I +V+ P +AL +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 183 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 233
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA + S DF + + + LP + IL +AT VQK
Sbjct: 234 VAKVDHVQMIVLDEADKLLS--QDF---VQIMEDIILTLPKNRQILLYSATFPLSVQK-F 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 MNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 343
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 344 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 403
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 404 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 176 (67.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 78/329 (23%), Positives = 138/329 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ-VIGL--- 98
Q+ A+ ++SGRD + TG GK+M + +P + P+ +N+ IGL
Sbjct: 405 QMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRH---IKDQEPV---KDNEGPIGLILT 458
Query: 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR-----LLYVTPELTATPGFMSKLKKI 153
+ +A + + + G P ++ L + AT G M L
Sbjct: 459 PTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAA 518
Query: 154 HSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ +++L + +DEA + G F P K+ + N PD + +AT PK+
Sbjct: 519 NQGRVVSLRRTTYIVLDEADRMFDMG--FEPQVMKIFA--NVRPDRQTVLFSATM-PKIM 573
Query: 209 KDVMESLCLQNPLVL----KSSF-NRPNLFYEVR-YKXXXXXXXXXXCSVLKANGDTCAI 262
D + L+NP+ + KS + E+R K + K + D ++
Sbjct: 574 -DALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSL 632
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
++ + DEL L G C + H G + R S + D+ S V++AT G+
Sbjct: 633 IFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGL 692
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
D K ++LV +++ P +E + +GR GR
Sbjct: 693 DVKQLKLVVNYDAPNHLEDYVHRAGRTGR 721
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 172 (65.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 76/330 (23%), Positives = 141/330 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVS----PL-IALMENQ 94
Q+ + VLSGRD + TG GK++ + +P + + I++ ++ P+ + + ++
Sbjct: 124 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSR 183
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL-LYVTPE----LTATPGFMSK 149
+ + + +F++S ++ L G +R L V + + ATPG +
Sbjct: 184 ELAKQTYDVVEQFVASL-VEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKD 242
Query: 150 L--KKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ KK S L+ +DEA + G D R + S R L +AT
Sbjct: 243 ILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQ------TLLFSATMPA 296
Query: 206 KVQKDVMESLCLQNPLVLK-SSFNRPNL--FYEVRY-KXXXXXXXXXXCSVLKANGDTCA 261
K+Q + + L P+ + NL EV Y K C + K
Sbjct: 297 KIQ--IFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC-LQKTTPPV-- 351
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
+++C + D++ YL G+ A H G + + R + + + +K V+VAT G
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKG 411
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+D D++ V ++++P +E + GR GR
Sbjct: 412 LDFPDIQHVINYDMPGEIENYVHRIGRTGR 441
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 171 (65.3 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 92/346 (26%), Positives = 149/346 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI-VLVVSPL--IALMENQ 94
Q ++I LSGRD G GKS Y IP L K I +V+ P +AL +Q
Sbjct: 123 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 182
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK- 152
+ K + G + +T T + +D+ +RL + ATPG + +KK
Sbjct: 183 ICIQVSKHMGGAKVMATTG---GTNLRDDI------MRLDDTVHVVIATPGRILDLIKKG 233
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDV 211
+ + ++ +DEA + S DF + + + LP + IL +AT VQK
Sbjct: 234 VAKVEHVQMIVLDEADKLLS--QDF---VQIMEDIILTLPKNRQILLYSATFPLSVQK-F 287
Query: 212 MESLCLQNP----LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
M S LQ P L+ + + +Y + S L+ N +I++C
Sbjct: 288 MNSH-LQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ---SIIFCNS 343
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L+ +S G SC HA + + R+ V D+ + + +V T F GID + V
Sbjct: 344 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAV 403
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
+V +F+ PK E + GR+GR ++ DDR ++ I
Sbjct: 404 NVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 449
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 74/323 (22%), Positives = 136/323 (42%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--PGI----VLVVSPLI 88
G + + Q AI +L G+D PTG GK++ Y +P L K P + V+V++P
Sbjct: 17 GFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTR 76
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
L+ Q+ +K AG +S + I ++ K R++ +P M
Sbjct: 77 ELVM-QIHEEVQKFTAGTEISGASLIG-GADIKRQVEKLKKHPRVIVGSPGRILELIRMK 134
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
KLK +H + + DE I + + + +++ + D ++ +AT K
Sbjct: 135 KLK-MHE---VKTIVFDEFDQIVK--QKMMGAVQDV--IKSTMRDRQLVFFSATMT-KAA 185
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLER 268
+D L ++ LV + +L E Y + GD A+ + +
Sbjct: 186 EDAARDLAVEPQLVRVTRAESKSLV-EHTYIICERREKNDYVRRIMHMGDVKAVAFLNDP 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DE++ L + AA HA + + R + + + + ++++AT GID D+
Sbjct: 245 FRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLT 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGR 351
V H +P +++ + SGR GR
Sbjct: 305 HVIHLELPDTVDQYIHRSGRTGR 327
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 175 (66.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 76/341 (22%), Positives = 138/341 (40%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGL 98
Q A+ ++SGRDC + TG GK++ + +P L +P + P I L+ L
Sbjct: 556 QTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP-IGLVMAPTREL 614
Query: 99 KEKGIAGEFLSSTQTMQVK-TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157
++ I + ++ + ++ +Y + L T + TPG M + S
Sbjct: 615 VQQ-IHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK 673
Query: 158 LLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ NL + +DEA + G F P ++ ++N P+ + +AT P+ Q + +
Sbjct: 674 ITNLRRVTFLVMDEADRMFDMG--FEPQITRI--IQNIRPERQTVLFSATF-PR-QVETL 727
Query: 213 ESLCLQNPLVL----KSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
L P+ + +S N+ EVR + G V E
Sbjct: 728 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQE 787
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ CD L + C + H G + R S + D+ + +++AT G+D K++
Sbjct: 788 K--CDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKEL 845
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
LV +F+ P E + GR GR ++ + DD +
Sbjct: 846 ELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAK 886
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 80/356 (22%), Positives = 157/356 (44%)
Query: 11 TSQTQKNKPLHEKEAL-VKLLR--WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
TS + KP E L +LLR +++G + Q AI ++ GRD +G GK+
Sbjct: 24 TSSEVEVKPTFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKT 83
Query: 68 MCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQVKTK- 119
+ I AL + VL++SP L + +++ +A EF++ V K
Sbjct: 84 ATFSIGALQCVEVNVRSPQVLILSPTRELAQQ----IQKVALALSEFMNIQVHACVGGKN 139
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
+ +D+ + + ++ TP M K + +R + ++ +DEA + S G F+
Sbjct: 140 LSDDVKKLETGVHIVSGTPGRVLD---MITRKSLPTRHI-KMMILDEADEMLSLG--FQ- 192
Query: 180 SYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235
++++ + YLP+ I+ ++AT V + + ++LK + + F+
Sbjct: 193 --QQINDVYRYLPNGTQIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFV 250
Query: 236 VRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
K C + + T A+++C + D+L+ + + A+ H + K
Sbjct: 251 SVEKEDWKFGTL--CDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQK 308
Query: 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
R ++ + S +V++ T GID + V LV ++++P E + GR+GR
Sbjct: 309 EREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGR 364
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 171 (65.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 87/354 (24%), Positives = 136/354 (38%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-------AKPG-----IVLVVSPLIAL 90
Q ++ + GRD TG GK++ + IP + AK G + LV++P L
Sbjct: 131 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTREL 190
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150
QV EK EF S ++ +Y G+ +L Y TPG + L
Sbjct: 191 AR-QV----EK----EFRESAPSLDTIC-LYGGTPIGQQMRQLDYGVDVAVGTPGRVIDL 240
Query: 151 KKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
K RG LNL V +DEA + G F + + LP+ + + P
Sbjct: 241 MK---RGALNLSEVQFVVLDEADQMLQVG--FAED---VEIILEKLPEKRQSMMFSATMP 292
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVL------KANGDT 259
+ + + L NPL + + + S++ A G
Sbjct: 293 SWIRSLTKKY-LNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGK 351
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
C IV+ + D LS Y A C A H ++ R L + ++VAT
Sbjct: 352 C-IVFTQTKRDADRLS-YALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAA 409
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
G+D +V L+ H+ +P + E F +GR GR ++L Y D R ++ I
Sbjct: 410 RGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKII 463
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 171 (65.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 73/337 (21%), Positives = 138/337 (40%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q + I +L+GRD + TG GK+ + +P L L ++ L + + ++
Sbjct: 33 QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAE 92
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPG-FMSKLKK--IHSRGL 158
+F + + V +Y LR L P++ TPG + LK+ + L
Sbjct: 93 AMTDFSKHMRGVNV-VALYGG-QRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKL 150
Query: 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 218
LV +DEA + G + ++ +P+ AL + P+ + + +
Sbjct: 151 SGLV-LDEADEMLRMGF-----IEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKE 204
Query: 219 NPLV-LKSSFN-RPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSA 276
V ++SS RP++ + L+A AI++ + E++
Sbjct: 205 PQEVRIQSSVTTRPDISQSY-WTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAE 263
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
L G + AA + +N R L+ R +++AT G+D + + LV +++IP
Sbjct: 264 ALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323
Query: 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
E++ GR GR ++LL+ +RR + I
Sbjct: 324 MDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 170 (64.9 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 77/322 (23%), Positives = 136/322 (42%)
Query: 50 VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV-------VSPLIALME-NQVIGLKEK 101
+L G D L TG GK++ + +PAL K I+ + +PL+ +M + + + +
Sbjct: 144 ILGGNDLVGLAATGSGKTLAFLLPALLK--IISLPKRPSYGATPLVLVMAPTRELAQQIE 201
Query: 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161
+ + T Q+ Y L S L + TPG ++ L + H +
Sbjct: 202 EVCKTSIRGTSIRQLCA--YGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKHHLSSVQY 259
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNP 220
+ +DEA + G F P ++ SL + +P + L +AT PK K ++ S L++P
Sbjct: 260 LVLDEADRMLDMG--FMP---QIESLIDQIPKERQTLMFSATW-PKEVK-LLASKFLKDP 312
Query: 221 LV-------LKSSFNRPNLFYEVRYKXXXXXXXXXXCSV---LKANGDTCAIVYCLERTT 270
+ L S N + + L A+ IV+C E+
Sbjct: 313 IKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIVFCNEKYK 372
Query: 271 CDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+ YLS + H+G + + R S L + R ++++AT G+D V+
Sbjct: 373 CDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKA 432
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V ++ +P ++E + GR GR
Sbjct: 433 VFNYRLPGNIEDYVHRIGRTGR 454
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 170 (64.9 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 81/321 (25%), Positives = 132/321 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q+ I L GRD TG GK+ + +P + + + L + + ++ +
Sbjct: 230 QMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIER 289
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSL-RLLYVTPELTATPGFMSKLKKIHSRGL--L 159
A E +S M KT + P L RL + ATPG + + K S L +
Sbjct: 290 QAKELMSGLPRM--KTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGV 347
Query: 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 219
+V +DEA + G F+ L L N D + ++AT +++ + S L N
Sbjct: 348 KIVVVDEADTMLKMG--FQQQV--LDILENIPNDCQTILVSATIPTSIEQ--LASQLLHN 401
Query: 220 PL-VLKSSFNRP--N-----LFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTC 271
P+ ++ N P N L+ E K + K V C +
Sbjct: 402 PVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKP--PVLVFVDC--KLGA 457
Query: 272 DELS-AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D LS A G+ + H+ + R ++L + +VVV+T G G+D VRLV
Sbjct: 458 DLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLV 517
Query: 331 CHFNIPKSMEAFYQESGRAGR 351
+F++P SM+ + + GR GR
Sbjct: 518 VNFDMPSSMDEYVHQIGRVGR 538
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 170 (64.9 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 78/322 (24%), Positives = 135/322 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q+ I L GRD TG GK+ + +P + + + L + + ++ +
Sbjct: 231 QMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALCESKTPSALILTPTRELAIQIEN 290
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSL-RLLYVTPELTATPGFMSKLKKIHSRGL--L 159
A E +S M KT + P L RL + ATPG + + K S L +
Sbjct: 291 QAKELMSGLPRM--KTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGI 348
Query: 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQ 218
+V +DEA + G F+ +++ + ++P D + ++AT +++ + S L
Sbjct: 349 KIVVVDEADTMLKMG--FQ---QQVLDILEHVPNDSQTILVSATIPTSIEQ--LASQLLH 401
Query: 219 NPL-VLKSSFNRPN-------LFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
NP+ ++ N P L+ E K + K V C +
Sbjct: 402 NPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILNDKKLFKP--PVLVFVDC--KLG 457
Query: 271 CDELS-AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
D LS A G+ + H+ + R ++L + +VVV+T G G+D VRL
Sbjct: 458 ADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRL 517
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +F++P SM+ + + GR GR
Sbjct: 518 VVNFDMPSSMDEYVHQVGRVGR 539
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 168 (64.2 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 83/326 (25%), Positives = 136/326 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--AKPGI----VLVVSPL--IALMENQ 94
Q +AI ++GRD G GK+ + IP L KP + L++ P +AL +Q
Sbjct: 73 QEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQ 132
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KK 152
V+ K + +T T + +D+ LRL L TPG + L +K
Sbjct: 133 VVRTLGKHCGISCMVTTGG----TNLRDDI------LRLNETVHILVGTPGRVLDLASRK 182
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ +L +DEA + S DF+ ++ S +LP L + P K+ M
Sbjct: 183 VADLSDCSLFIMDEADKMLS--RDFKTIIEQILS---FLPPTHQSLLFSATFPLTVKEFM 237
Query: 213 ES-------LCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYC 265
+ L L LK + F E R K S L+ N AI++C
Sbjct: 238 VKHLHKPYEINLMEELTLKG-ITQYYAFVEERQKLHCLNTLF---SKLQINQ---AIIFC 290
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ L+ ++ G SC HA + + R+ V ++ + + +V + GID +
Sbjct: 291 NSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQ 350
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGR 351
V +V +F+ PK+ E + GR+GR
Sbjct: 351 AVNVVINFDFPKTAETYLHRIGRSGR 376
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 166 (63.5 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 78/356 (21%), Positives = 152/356 (42%)
Query: 28 KLLR--WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
KLLR + +G + Q I+ +L+G D +G GK+ + I +L V
Sbjct: 33 KLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVAC 92
Query: 86 PLIALMENQVIGLKEKGIA---GEFLS-STQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+ L + + + + + G++L T + ED+D K + ++
Sbjct: 93 QALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQGVHMV------V 146
Query: 142 ATPGFM-SKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
TPG + + K H G+ L L +DEA + S G F+ ++ + +PD+ +
Sbjct: 147 GTPGRVYDMIDKRHL-GVDRLKLFILDEADEMLSRG--FKAQIYEV--FKKLVPDIQVAL 201
Query: 199 LTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSVL 253
+AT ++ + + + +++P LV K + FY K C +
Sbjct: 202 FSATMPQEILE--LTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTL--CDLY 257
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
+ T +I+YC R D L+ + + + H ++ K R ++ ++ S +V+V
Sbjct: 258 ETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLV 317
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
T GID + V LV ++++P S + + GR+GR ++ + DD+ +
Sbjct: 318 TTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEK 373
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 166 (63.5 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 78/356 (21%), Positives = 152/356 (42%)
Query: 28 KLLR--WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
KLLR + +G + Q I+ +L+G D +G GK+ + I +L V
Sbjct: 33 KLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVAC 92
Query: 86 PLIALMENQVIGLKEKGIA---GEFLS-STQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+ L + + + + + G++L T + ED+D K + ++
Sbjct: 93 QALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQGVHMV------V 146
Query: 142 ATPGFM-SKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
TPG + + K H G+ L L +DEA + S G F+ ++ + +PD+ +
Sbjct: 147 GTPGRVYDMIDKRHL-GVDRLKLFILDEADEMLSRG--FKAQIYEV--FKKLVPDIQVAL 201
Query: 199 LTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSVL 253
+AT ++ + + + +++P LV K + FY K C +
Sbjct: 202 FSATMPQEILE--LTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTL--CDLY 257
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
+ T +I+YC R D L+ + + + H ++ K R ++ ++ S +V+V
Sbjct: 258 ETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLV 317
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
T GID + V LV ++++P S + + GR+GR ++ + DD+ +
Sbjct: 318 TTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEK 373
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 166 (63.5 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 72/354 (20%), Positives = 155/354 (43%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L++ + + +G + Q +I ++ GRD +G GK+ + I L L
Sbjct: 34 KEELLRGI-YAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTL 92
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI-YEDLDSGKPSLRLLYVTPELT 141
+ ++ L + + ++ + + L+ M V+ + + G+ +L Y ++
Sbjct: 93 RETQVLCLSPTRELAVQIQKV---ILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVS 149
Query: 142 ATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-IL 197
TPG F M K + + +R + LV +DEA + + G F+ ++ + YLP ++
Sbjct: 150 GTPGRVFDMIKRRVLRTRAIKMLV-LDEADEMLNKG--FK---EQIYDVYRYLPPATQVV 203
Query: 198 ALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLK 254
++AT ++ + M S + +P LV + + C +
Sbjct: 204 LISATLPHEILE--MTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 261
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
T A+++C + D L+ + + ++ H + K R ++ ++ + + +V++
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 321
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
T + GID + V LV ++++P + E + GR+GR ++ + DD R
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIR 375
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 167 (63.8 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 80/350 (22%), Positives = 139/350 (39%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q AI L GRD + TG GK+ + +P + +L A M ++ +
Sbjct: 29 QAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT----LLARGRARARMPRSLVLCPTRE 84
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLR----LLYVTPE-LTATPGFMSKLKKIHSRG 157
+A + + T K+ + L G S + L+ + L ATPG +L RG
Sbjct: 85 LAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPG---RLLDHFERG 141
Query: 158 LL-----NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
L ++ +DEA + G F P ++ SL + L +AT AP++++
Sbjct: 142 KLLLTGVQIMVVDEADRMLDMG--FIPDIERIFSLTPFTRQT--LFFSATMAPEIERITN 197
Query: 213 ESLCLQNPLVLKSSFNRPN-------LFYEVRYKXXXXXXXXXXCSVLKANGDTC--AIV 263
L + + LF R +++ A G+ C AI+
Sbjct: 198 TFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALIDAEGEKCTNAII 257
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
+C +T D ++ L G A H L+ R+ LD + + +++VA+ G+D
Sbjct: 258 FCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLD 317
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
V V +F++P E + GR GR K++ D + ++ I
Sbjct: 318 VPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKALDAI 367
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 165 (63.1 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 69/322 (21%), Positives = 142/322 (44%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q AI + GRD +G GK+ + I AL + + + L + + L+ K
Sbjct: 50 QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKN 109
Query: 103 IA---GEFLSSTQTMQVK-TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSR 156
+ G +L T + T + +D+++ + ++++ TPG + + ++
Sbjct: 110 VITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQIV------VGTPGRVLDMIERRYFKT 163
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME--S 214
+ + +DEA + S G F+ ++ ++ LP+ + L + P+ DV+E +
Sbjct: 164 DKVKMFILDEADEMLSSG--FK---EQIYNIFRLLPETTQIVLLSATMPQ---DVLEVTT 215
Query: 215 LCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ NP LV K + FY + + C + + T A+++C R+
Sbjct: 216 KFMNNPVRILVKKDELTLEGIKQFY-INVELEDYKFDCL-CDLYDSISVTQAVIFCNTRS 273
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ L+ L + +A HA L R +++ ++ S +++++T GID + V L
Sbjct: 274 KVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 333
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V ++++P + E + GR GR
Sbjct: 334 VINYDLPANKENYIHRIGRGGR 355
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 165 (63.1 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 69/322 (21%), Positives = 142/322 (44%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q AI + GRD +G GK+ + I AL + + + L + + L+ K
Sbjct: 50 QQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKN 109
Query: 103 IA---GEFLSSTQTMQVK-TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSR 156
+ G +L T + T + +D+++ + ++++ TPG + + ++
Sbjct: 110 VITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQIV------VGTPGRVLDMIERRYFKT 163
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME--S 214
+ + +DEA + S G F+ ++ ++ LP+ + L + P+ DV+E +
Sbjct: 164 DKVKMFILDEADEMLSSG--FK---EQIYNIFRLLPETTQIVLLSATMPQ---DVLEVTT 215
Query: 215 LCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ NP LV K + FY + + C + + T A+++C R+
Sbjct: 216 KFMNNPVRILVKKDELTLEGIKQFY-INVELEDYKFDCL-CDLYDSISVTQAVIFCNTRS 273
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ L+ L + +A HA L R +++ ++ S +++++T GID + V L
Sbjct: 274 KVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 333
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V ++++P + E + GR GR
Sbjct: 334 VINYDLPANKENYIHRIGRGGR 355
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 165 (63.1 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 80/363 (22%), Positives = 157/363 (43%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----- 77
KE L++ + + FG + Q AI +G+D +G GK+ + + L +
Sbjct: 37 KEELLRGI-YGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHED 95
Query: 78 PGI-VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK-TKIYEDLDSGKPSLRLLY 135
P + LV++P L + Q+ K GE+L+ + T + +D + + ++
Sbjct: 96 PHVQALVMAPTRELAQ-QI--QKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVV 152
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TP G M + + + + +DEA + S G F+ ++ R+ DV
Sbjct: 153 GTP---GRVGDMINRNALDT-SRIKMFVLDEADEMLSRG--FKDQIYEV--FRSMPQDVQ 204
Query: 196 ILALTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXC 250
++ L+AT +V DV ++NP LV K + FY K C
Sbjct: 205 VVLLSATMPSEVL-DVTNRF-MRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCL--C 260
Query: 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
+ T A+++C R D L+ ++ + + H ++ R +++ ++ S +
Sbjct: 261 DLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSR 320
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
V++ T GID + V LV ++++P + E + GR+GR ++ + +D R++
Sbjct: 321 VLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQL 380
Query: 371 EFI 373
+ I
Sbjct: 381 KEI 383
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 166 (63.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 80/345 (23%), Positives = 143/345 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP--LIALMENQVIGLKE 100
Q++AI L GRD L TG GK+ + +P L L+ +P L AL+ L
Sbjct: 51 QIEAIPLALQGRDIIGLAETGSGKTGAFALPILN----ALLETPQRLFALVLTPTRELAF 106
Query: 101 KGIAGEFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELTATPG----FMSKLKKIHS 155
+ I+ +F + ++ V++ I +DS SL L + ATPG + K +
Sbjct: 107 Q-ISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNL 165
Query: 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 214
R L LV +DEA I + DF K+ + +P D +AT KVQK ++
Sbjct: 166 RALKYLV-MDEADRILNM--DFETEVDKILKV---IPRDRKTFLFSATMTKKVQK--LQR 217
Query: 215 LCLQNPL--VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCD 272
L+NP+ + S + + +L +++C
Sbjct: 218 AALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 277
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+ L G + H ++ R L+ + + + +++AT G+D V +V +
Sbjct: 278 RTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVN 337
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLY---YGMDDRRRMEFIL 374
F+IP + + GR R K++ + Y ++ +R+E ++
Sbjct: 338 FDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLI 382
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 166 (63.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 76/342 (22%), Positives = 134/342 (39%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI-ALMEN 93
G+ Q Q I L G+D TG GK+ + +P L + PL+ AL+
Sbjct: 20 GYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPLLRALVMT 79
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKT-KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
L + + +Q + +KT +Y + + L ATPG + +
Sbjct: 80 PTRELAIQ-VCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFDIIG 138
Query: 153 IHSRGLLNL--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210
+ L ++ + IDEA + G F K+ L P + +AT + V K
Sbjct: 139 QFNLDLSSVTTLVIDEADRMLDLG--FVRDIEKVKRL--IAPVHQTMLFSATYSDAV-KQ 193
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ + Q V + + ++ Y+ ++ N +V+ +
Sbjct: 194 LSHKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKEC 253
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
+ L L+ GIS +H AR+ VLDD+ + + +V+VAT G+D + + LV
Sbjct: 254 AEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLV 313
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG-MDDRRRME 371
+ +P E + GR GR L +++ + DD E
Sbjct: 314 INLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 166 (63.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 76/342 (22%), Positives = 134/342 (39%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI-ALMEN 93
G+ Q Q I L G+D TG GK+ + +P L + PL+ AL+
Sbjct: 20 GYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAKPADKPLLRALVMT 79
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKT-KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
L + + +Q + +KT +Y + + L ATPG + +
Sbjct: 80 PTRELAIQ-VCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFDIIG 138
Query: 153 IHSRGLLNL--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210
+ L ++ + IDEA + G F K+ L P + +AT + V K
Sbjct: 139 QFNLDLSSVTTLVIDEADRMLDLG--FVRDIEKVKRL--IAPVHQTMLFSATYSDAV-KQ 193
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ + Q V + + ++ Y+ ++ N +V+ +
Sbjct: 194 LSHKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKEC 253
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
+ L L+ GIS +H AR+ VLDD+ + + +V+VAT G+D + + LV
Sbjct: 254 AEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLV 313
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG-MDDRRRME 371
+ +P E + GR GR L +++ + DD E
Sbjct: 314 INLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 72/338 (21%), Positives = 143/338 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK-EK 101
Q AI+ ++ GRD +G GK+ + I L I + + + L + + ++ +K
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGL 158
G+ L +Q I + G+ +L Y + TPG F M + + + +R +
Sbjct: 125 GLLA--LGDYMNVQCHACI-GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 181
Query: 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP--------KVQKD 210
LV +DEA + + G F+ ++ + YLP + L + P K D
Sbjct: 182 KMLV-LDEADEMLNKG--FK---EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD 235
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ L ++ L L+ F V + C + T A+++C +
Sbjct: 236 PIRILVKRDELTLEGI---KQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRK 289
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D L+ + + ++ H + K R S++ ++ S +V+++T + G+D V L+
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
++++P + E + GR+GR ++ + DD R
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 387
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 72/338 (21%), Positives = 143/338 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK-EK 101
Q AI+ ++ GRD +G GK+ + I L I + + + L + + ++ +K
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGL 158
G+ L +Q I + G+ +L Y + TPG F M + + + +R +
Sbjct: 125 GLLA--LGDYMNVQCHACI-GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 181
Query: 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP--------KVQKD 210
LV +DEA + + G F+ ++ + YLP + L + P K D
Sbjct: 182 KMLV-LDEADEMLNKG--FK---EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD 235
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ L ++ L L+ F V + C + T A+++C +
Sbjct: 236 PIRILVKRDELTLEGI---KQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRK 289
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D L+ + + ++ H + K R S++ ++ S +V+++T + G+D V L+
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
++++P + E + GR+GR ++ + DD R
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 387
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 72/338 (21%), Positives = 143/338 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK-EK 101
Q AI+ ++ GRD +G GK+ + I L I + + + L + + ++ +K
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGL 158
G+ L +Q I + G+ +L Y + TPG F M + + + +R +
Sbjct: 125 GLLA--LGDYMNVQCHACI-GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 181
Query: 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP--------KVQKD 210
LV +DEA + + G F+ ++ + YLP + L + P K D
Sbjct: 182 KMLV-LDEADEMLNKG--FK---EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD 235
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ L ++ L L+ F V + C + T A+++C +
Sbjct: 236 PIRILVKRDELTLEGI---KQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRK 289
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D L+ + + ++ H + K R S++ ++ S +V+++T + G+D V L+
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
++++P + E + GR+GR ++ + DD R
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 387
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 72/338 (21%), Positives = 143/338 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK-EK 101
Q AI+ ++ GRD +G GK+ + I L I + + + L + + ++ +K
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGL 158
G+ L +Q I + G+ +L Y + TPG F M + + + +R +
Sbjct: 125 GLLA--LGDYMNVQCHACI-GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 181
Query: 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP--------KVQKD 210
LV +DEA + + G F+ ++ + YLP + L + P K D
Sbjct: 182 KMLV-LDEADEMLNKG--FK---EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD 235
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ L ++ L L+ F V + C + T A+++C +
Sbjct: 236 PIRILVKRDELTLEGI---KQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRK 289
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D L+ + + ++ H + K R S++ ++ S +V+++T + G+D V L+
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
++++P + E + GR+GR ++ + DD R
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 387
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 72/338 (21%), Positives = 143/338 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK-EK 101
Q AI+ ++ GRD +G GK+ + I L I + + + L + + ++ +K
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGL 158
G+ L +Q I + G+ +L Y + TPG F M + + + +R +
Sbjct: 125 GLLA--LGDYMNVQCHACI-GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 181
Query: 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP--------KVQKD 210
LV +DEA + + G F+ ++ + YLP + L + P K D
Sbjct: 182 KMLV-LDEADEMLNKG--FK---EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD 235
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ L ++ L L+ F V + C + T A+++C +
Sbjct: 236 PIRILVKRDELTLEGI---KQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRK 289
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D L+ + + ++ H + K R S++ ++ S +V+++T + G+D V L+
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
++++P + E + GR+GR ++ + DD R
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 387
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 72/338 (21%), Positives = 143/338 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLK-EK 101
Q AI+ ++ GRD +G GK+ + I L I + + + L + + ++ +K
Sbjct: 66 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 125
Query: 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGL 158
G+ L +Q I + G+ +L Y + TPG F M + + + +R +
Sbjct: 126 GLLA--LGDYMNVQCHACI-GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 182
Query: 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP--------KVQKD 210
LV +DEA + + G F+ ++ + YLP + L + P K D
Sbjct: 183 KMLV-LDEADEMLNKG--FK---EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD 236
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ L ++ L L+ F V + C + T A+++C +
Sbjct: 237 PIRILVKRDELTLEGI---KQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRK 290
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D L+ + + ++ H + K R S++ ++ S +V+++T + G+D V L+
Sbjct: 291 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 350
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
++++P + E + GR+GR ++ + DD R
Sbjct: 351 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 388
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 167 (63.8 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 81/334 (24%), Positives = 136/334 (40%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q+ + +L+GRD + TG GK++ + +P + ++ P IA E IGL
Sbjct: 173 QVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMP-IAAGEGP-IGLI--- 227
Query: 103 IAGEFLSSTQTMQVKTKIYEDL-DSGKPSLRLLY------VTPEL----------TATPG 145
+ + QT +V + L ++G P LR L + +L ATPG
Sbjct: 228 VCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPG 287
Query: 146 FMSKL--KKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNYLPDVPILALTA 201
+ + KK S + +DEA + G D R + S R L +A
Sbjct: 288 RLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQ------TLLFSA 341
Query: 202 TAAPKVQKDVMESLCLQNPLVLK-SSFNRPNL--FYEVRY-KXXXXXXXXXXCSVLKANG 257
T K+Q + L P+ + NL EV Y K C L+
Sbjct: 342 TMPTKIQ--IFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC--LQKTS 397
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+++C + D++ YL G+ A H G + + R + + + +K V+VAT
Sbjct: 398 PP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDV 456
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
G+D D++ V ++++P +E + GR GR
Sbjct: 457 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 490
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 168 (64.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 90/343 (26%), Positives = 146/343 (42%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL---------AKPG-IVLVVSPLIALMEN-QVIGLK 99
+ RD + TG GK++ Y IP ++ G +LV+SP L QV LK
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323
Query: 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMS---KLKKIHS 155
F S++ +Y G P L+ + ++ ATPG ++ ++K+I
Sbjct: 324 -------FGKSSKISCAC--LYGGAPKG-PQLKEIERGVDIVVATPGRLNDILEMKRISL 373
Query: 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDVMES 214
+ LV +DEA + G F P RK+ N +P L TAT +V+K +
Sbjct: 374 HQVSYLV-LDEADRMLDMG--FEPQIRKIV---NEVPTKRQTLMYTATWPKEVRK-IAAD 426
Query: 215 LCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC--------SVLKANGD-TCAIVYC 265
L L NP + N N+ V K +L++ + I++C
Sbjct: 427 L-LVNP----AQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFC 481
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ CD+L+ L+ AA H + R VL+ + S R V+VAT G+D K
Sbjct: 482 STKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVK 540
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
D+R+V +++ P +E + GR GR + ++G D +
Sbjct: 541 DIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAK 583
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 165 (63.1 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 88/387 (22%), Positives = 158/387 (40%)
Query: 4 SPL-AMQSTSQTQKNKPLHEKEALVKLLRW--HFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
SP A+Q+ ++ ++ K + L G A+ Q++AI L GRD L
Sbjct: 9 SPTEALQTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLA 68
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSP--LIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118
TG GK+ + +P L L+ +P L AL+ L + I+ +F + ++ V+
Sbjct: 69 ETGSGKTGAFALPILN----ALLETPQRLFALVLTPTRELAFQ-ISEQFEALGSSIGVQC 123
Query: 119 K-IYEDLDSGKPSLRLLYVTPELTATPG----FMSKLKKIHSRGLLNLVAIDEAHCISSW 173
I +DS SL L + ATPG + K + R L LV +DEA I +
Sbjct: 124 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLV-MDEADRILNM 182
Query: 174 GHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPL--VLKSSFNRP 230
DF K+ + +P D +AT KVQK ++ L+NP+ + S +
Sbjct: 183 --DFETEVDKILKV---IPRDRKTFLFSATMTKKVQK--LQRAALKNPVKCAVSSKYQTV 235
Query: 231 NLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290
+ +L +++C + L G + H
Sbjct: 236 EKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHG 295
Query: 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350
++ R L+ + + + +++AT G+D V +V +F+IP + + GR
Sbjct: 296 QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 355
Query: 351 RDQLPSKSLLY---YGMDDRRRMEFIL 374
R K++ + Y ++ +R+E ++
Sbjct: 356 RAGRSGKAITFVTQYDVELFQRIEHLI 382
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 165 (63.1 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 80/345 (23%), Positives = 143/345 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP--LIALMENQVIGLKE 100
Q++AI L GRD L TG GK+ + +P L L+ +P L AL+ L
Sbjct: 77 QIEAIPLALQGRDIIGLAETGSGKTGAFALPILN----ALLETPQRLFALVLTPTRELAF 132
Query: 101 KGIAGEFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELTATPG----FMSKLKKIHS 155
+ I+ +F + ++ V++ I +DS SL L + ATPG + K +
Sbjct: 133 Q-ISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL 191
Query: 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 214
R L LV +DEA I + DF K+ + +P D +AT KVQK ++
Sbjct: 192 RALKYLV-MDEADRILNM--DFETEVDKILKV---IPRDRKTFLFSATMTKKVQK--LQR 243
Query: 215 LCLQNPL--VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCD 272
L+NP+ + S + + +L +++C
Sbjct: 244 AALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 303
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+ L G + H ++ R L+ + + + +++AT G+D V +V +
Sbjct: 304 RTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVN 363
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLY---YGMDDRRRMEFIL 374
F+IP + + GR R K++ + Y ++ +R+E ++
Sbjct: 364 FDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLI 408
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 164 (62.8 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 85/327 (25%), Positives = 145/327 (44%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQ 94
Q ++I L+G++ G GK+ + IP L K G++LV + +AL +
Sbjct: 87 QEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCNTHKNFIQGLILVPTRELALQTSA 146
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KK 152
+I KE G + T T + ED+ +RL V L TPG + L K
Sbjct: 147 MI--KELGKHMKVQCMVTTGG--TSLREDI------MRLYNVVHILCGTPGRILDLANKD 196
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQK-- 209
+ + +++ +DEA + S +F+P + L +LP + IL +AT V++
Sbjct: 197 VANLSGCHIMVMDEADKLLS--PEFQPI---VEELMKFLPKEKQILMYSATFPVTVKEFR 251
Query: 210 -----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVY 264
D E + L + L LK + F + R K L+ N AI++
Sbjct: 252 AIYLSDAHE-INLMDELTLKG-ITQYYAFVKERQKVHCLNTLFAK---LQINQ---AIIF 303
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C T + L+ ++ G S HA ++ R+ V D+ + + +V++ F GID
Sbjct: 304 CNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSSDLFTRGIDI 363
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGR 351
+ V +V +F+ PK+ E + GR+GR
Sbjct: 364 QSVNVVINFDFPKNSETYLHRIGRSGR 390
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 170 (64.9 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 81/351 (23%), Positives = 138/351 (39%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIA 89
G A Q AI A++SGRD + TG GK+M + IP +P + + P+
Sbjct: 560 GFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRP-LENMEGPIGL 618
Query: 90 LME-NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+M + + + FL + V Y L + TPG M
Sbjct: 619 IMTPTRELATQIHKDCKPFLKALNLRAVCA--YGGAPIKDQIAELKRGAEIIVCTPGRMI 676
Query: 149 KLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
L ++ + NL V +DEA + G F P K+ L N PD + +AT
Sbjct: 677 DLLAANAGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMKI--LSNVRPDRQTVLFSATF 732
Query: 204 APKVQKDVMESLCLQNPLVLKS-SFNRPNL--FYEVRYKXXXXXXXXXXCSVLKA---NG 257
++ ++L +V+ S P + EV + L + N
Sbjct: 733 PRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNLYSTDENE 792
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
D ++++ + D L L G C + H G + R S ++D+ + V++AT
Sbjct: 793 DARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSV 852
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
G+D K ++LV +++ P +E + +GR GR ++ + D R
Sbjct: 853 AARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQER 903
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 163 (62.4 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 74/340 (21%), Positives = 148/340 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE 100
Q AI +L GRD TG GK+ + +P L K G + AL+ ++ +E
Sbjct: 28 QTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALI---LVPTRE 84
Query: 101 KG--IAGEFLSSTQTMQVKT-KIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIH 154
+A + + +K+ ++ +D RL+ L ATPG + L + ++
Sbjct: 85 LAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVY 144
Query: 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVME 213
+ +V +DEA + G F S K+ LP +V L +AT + KV++ +
Sbjct: 145 FEEI-EMVVLDEADRMLDMG--FIESINKIIDC---LPSEVQFLLFSATLSRKVRE--LA 196
Query: 214 SLCLQNPLVLKSSFN---RPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+++P + + N + N+ + + + D A+++ +
Sbjct: 197 KTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ-ALIFIETKHG 255
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
+L + L GI A+H+G + R+ +L+D+ S + + +VAT GID + V
Sbjct: 256 AAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRV 315
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
++++P + + GR GR + +++ + D+ + +
Sbjct: 316 VNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 163 (62.4 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 74/340 (21%), Positives = 148/340 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE 100
Q AI +L GRD TG GK+ + +P L K G + AL+ ++ +E
Sbjct: 28 QTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALI---LVPTRE 84
Query: 101 KG--IAGEFLSSTQTMQVKT-KIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIH 154
+A + + +K+ ++ +D RL+ L ATPG + L + ++
Sbjct: 85 LAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVY 144
Query: 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVME 213
+ +V +DEA + G F S K+ LP +V L +AT + KV++ +
Sbjct: 145 FEEI-EMVVLDEADRMLDMG--FIESINKIIDC---LPSEVQFLLFSATLSRKVRE--LA 196
Query: 214 SLCLQNPLVLKSSFN---RPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+++P + + N + N+ + + + D A+++ +
Sbjct: 197 KTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ-ALIFIETKHG 255
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
+L + L GI A+H+G + R+ +L+D+ S + + +VAT GID + V
Sbjct: 256 AAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRV 315
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
++++P + + GR GR + +++ + D+ + +
Sbjct: 316 VNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 164 (62.8 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 75/322 (23%), Positives = 136/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL---K 99
QL AI AVL+G+D TG GK+ + +P L +L P + NQV L
Sbjct: 28 QLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE----LLAKGPKVRA--NQVRALILTP 81
Query: 100 EKGIAGEFLSSTQT----MQVKTKIYEDLDSGKPSL-RLLYVTPELTATPGFMSKLKKIH 154
+ +A + + + +K+ + P + R+ L ATPG + L +
Sbjct: 82 TRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQN 141
Query: 155 SRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDV 211
+ L ++ +DEA + G R + + LP+ L +AT + ++ +++
Sbjct: 142 AVKFDQLEILVLDEADRMLDMGF-----IRDIHKILKLLPEKRQNLLFSATFSTEI-REL 195
Query: 212 MESLCLQNPLVLKSS--FNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ L + NP+ + S + + Y ++K +V+ +
Sbjct: 196 AKGL-VNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKH 254
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ L+ YL+ G++ AA H + AR+ L D+ + +++VAT GID +
Sbjct: 255 GANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQ 314
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +F +PK E + GR GR
Sbjct: 315 VVNFELPKIAEDYVHRIGRTGR 336
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 164 (62.8 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 75/322 (23%), Positives = 136/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL---K 99
QL AI AVL+G+D TG GK+ + +P L +L P + NQV L
Sbjct: 28 QLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE----LLAKGPKVRA--NQVRALILTP 81
Query: 100 EKGIAGEFLSSTQT----MQVKTKIYEDLDSGKPSL-RLLYVTPELTATPGFMSKLKKIH 154
+ +A + + + +K+ + P + R+ L ATPG + L +
Sbjct: 82 TRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQN 141
Query: 155 SRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDV 211
+ L ++ +DEA + G R + + LP+ L +AT + ++ +++
Sbjct: 142 AVKFDQLEILVLDEADRMLDMGF-----IRDIHKILKLLPEKRQNLLFSATFSTEI-REL 195
Query: 212 MESLCLQNPLVLKSS--FNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ L + NP+ + S + + Y ++K +V+ +
Sbjct: 196 AKGL-VNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKH 254
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ L+ YL+ G++ AA H + AR+ L D+ + +++VAT GID +
Sbjct: 255 GANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQ 314
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +F +PK E + GR GR
Sbjct: 315 VVNFELPKIAEDYVHRIGRTGR 336
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 169 (64.5 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 75/340 (22%), Positives = 145/340 (42%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIV 81
++ L+ H G+ + Q AI A++SGRD + TG GK++ + +P + + +
Sbjct: 383 ILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 441
Query: 82 LVVSPLIALME-NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
P+ +M + + L+ +F S T ++V +Y + L +
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKF-SKTLGLRVVC-VYGGTGISEQIAELKRGAEII 499
Query: 141 TATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPG M + +S + NL V +DEA + G F P ++ + N PD
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMRI--VDNVRPDRQ 555
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
+ +AT P+ + + + L P+ ++ R + +V + +L+
Sbjct: 556 TVMFSATF-PRAMEALARRI-LSKPIEVQVG-GRSVVCSDVEQQVIVIEEEKKFLKLLEL 612
Query: 256 NG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
G I++ ++ D L L C + H G++ R S+++D+ + ++
Sbjct: 613 LGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKL 672
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+VAT G+D K + LV +++ P E + +GR GR
Sbjct: 673 LVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGR 712
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 169 (64.5 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 75/340 (22%), Positives = 145/340 (42%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIV 81
++ L+ H G+ + Q AI A++SGRD + TG GK++ + +P + + +
Sbjct: 383 ILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 441
Query: 82 LVVSPLIALME-NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
P+ +M + + L+ +F S T ++V +Y + L +
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKF-SKTLGLRVVC-VYGGTGISEQIAELKRGAEII 499
Query: 141 TATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPG M + +S + NL V +DEA + G F P ++ + N PD
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMRI--VDNVRPDRQ 555
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
+ +AT P+ + + + L P+ ++ R + +V + +L+
Sbjct: 556 TVMFSATF-PRAMEALARRI-LSKPIEVQVG-GRSVVCSDVEQQVIVIEEEKKFLKLLEL 612
Query: 256 NG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
G I++ ++ D L L C + H G++ R S+++D+ + ++
Sbjct: 613 LGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKL 672
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+VAT G+D K + LV +++ P E + +GR GR
Sbjct: 673 LVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGR 712
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 169 (64.5 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 75/340 (22%), Positives = 145/340 (42%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIV 81
++ L+ H G+ + Q AI A++SGRD + TG GK++ + +P + + +
Sbjct: 383 ILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 441
Query: 82 LVVSPLIALME-NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
P+ +M + + L+ +F S T ++V +Y + L +
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKF-SKTLGLRVVC-VYGGTGISEQIAELKRGAEII 499
Query: 141 TATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPG M + +S + NL V +DEA + G F P ++ + N PD
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMRI--VDNVRPDRQ 555
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
+ +AT P+ + + + L P+ ++ R + +V + +L+
Sbjct: 556 TVMFSATF-PRAMEALARRI-LSKPIEVQVG-GRSVVCSDVEQQVIVIEEEKKFLKLLEL 612
Query: 256 NG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
G I++ ++ D L L C + H G++ R S+++D+ + ++
Sbjct: 613 LGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKL 672
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+VAT G+D K + LV +++ P E + +GR GR
Sbjct: 673 LVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGR 712
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 164 (62.8 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 81/343 (23%), Positives = 143/343 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGL 98
Q AI AVL GRD TG GK+ + +P L + P+ AL+ L
Sbjct: 28 QQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTREL 87
Query: 99 KEKGIAGEFLSSTQTMQVKTKI-YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157
+ I ++ + +++ + + + ++L L ATPG + L+ ++
Sbjct: 88 AAQ-IGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVK 146
Query: 158 L--LNLVAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L + ++ +DEA + G HD R KL + R L +AT + + K + E
Sbjct: 147 LDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNL------LFSATFSDDI-KALAE 199
Query: 214 SLCLQNPL---VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
L L NPL V + + + V + + K N +V+ +
Sbjct: 200 KL-LHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ-VLVFTRTKHG 257
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
+ L+ L+ GI AA H + AR+ L D+ S +V+VAT G+D +++ V
Sbjct: 258 ANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
++ +P E + GR GR ++L +D+ + + I
Sbjct: 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 164 (62.8 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 86/383 (22%), Positives = 156/383 (40%)
Query: 7 AMQSTSQTQKNKPLHEKEALVKLLRW--HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGG 64
A+Q+ ++ ++ K + L G A+ Q++AI L GRD L TG
Sbjct: 13 ALQTAAEEEETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGS 72
Query: 65 GKSMCYQIPALAKPGIVLVVSP--LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK-IY 121
GK+ + +P L L+ +P L AL+ L + I+ +F + ++ V+ I
Sbjct: 73 GKTGAFALPILN----ALLETPQRLFALVLTPTRELAFQ-ISEQFEALGSSIGVQCAVIV 127
Query: 122 EDLDSGKPSLRLLYVTPELTATPG----FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177
+DS SL L + ATPG + K + R L LV +DEA I + DF
Sbjct: 128 GGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLV-MDEADRILNM--DF 184
Query: 178 RPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPL--VLKSSFNRPNLFY 234
K+ + +P D +AT KVQK ++ L+NP+ + S +
Sbjct: 185 ETEVDKILKV---IPRDRKTFLFSATMTKKVQK--LQRAALKNPVKCAVSSKYQTVEKLQ 239
Query: 235 EVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294
+ +L +++C + L G + H ++
Sbjct: 240 QYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQ 299
Query: 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R L+ + + + +++AT G+D V +V +F+IP + + GR R
Sbjct: 300 SKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGR 359
Query: 355 PSKSLLY---YGMDDRRRMEFIL 374
K++ + Y ++ +R+E ++
Sbjct: 360 SGKAITFVTQYDVELFQRIEHLI 382
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 165 (63.1 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 83/354 (23%), Positives = 152/354 (42%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALM 91
G+++ Q +I + +GRD TG GK+ + +P + K G+ S
Sbjct: 186 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVT--ASAFQKQQ 243
Query: 92 ENQ-VIGLKEKGIAGE-FLSSTQ----TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
E Q +I + + + FL + + T IY +G +++ L ATPG
Sbjct: 244 EPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPG 303
Query: 146 FMSKLKKIHSRGLLNLVAI-----DEAHCISSWGHDFRPSYRKLSSLRNYLPDVP----- 195
+L I +G ++LV + DEA + G F +KL S Y P++P
Sbjct: 304 ---RLLDIIEKGKISLVEVKYLVLDEADRMLDMG--FGLDMKKLIS---Y-PEMPSKDRR 354
Query: 196 -ILALTATAAPKVQKDVMESLCLQNP-LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVL 253
L +AT +VQ+ E L LV+ ++ + + + +L
Sbjct: 355 QTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDKLIEIL 414
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
++ G +V+ + D L+A+L + + H + R L D+ S + Q++V
Sbjct: 415 QSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILV 474
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
AT G+D ++V+ V +F++P ++E + GR GR K++ ++ DD+
Sbjct: 475 ATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFF--DDQ 526
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 165 (63.1 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 83/354 (23%), Positives = 152/354 (42%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALM 91
G+++ Q +I + +GRD TG GK+ + +P + K G+ S
Sbjct: 186 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVT--ASAFQKQQ 243
Query: 92 ENQ-VIGLKEKGIAGE-FLSSTQ----TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
E Q +I + + + FL + + T IY +G +++ L ATPG
Sbjct: 244 EPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPG 303
Query: 146 FMSKLKKIHSRGLLNLVAI-----DEAHCISSWGHDFRPSYRKLSSLRNYLPDVP----- 195
+L I +G ++LV + DEA + G F +KL S Y P++P
Sbjct: 304 ---RLLDIIEKGKISLVEVKYLVLDEADRMLDMG--FGLDMKKLIS---Y-PEMPSKDRR 354
Query: 196 -ILALTATAAPKVQKDVMESLCLQNP-LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVL 253
L +AT +VQ+ E L LV+ ++ + + + +L
Sbjct: 355 QTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDKLIEIL 414
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
++ G +V+ + D L+A+L + + H + R L D+ S + Q++V
Sbjct: 415 QSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILV 474
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
AT G+D ++V+ V +F++P ++E + GR GR K++ ++ DD+
Sbjct: 475 ATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFF--DDQ 526
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 166 (63.5 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 76/327 (23%), Positives = 139/327 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP----AL---AKPGIVLVVSPL-IALMENQ 94
Q+ + +LSGRD + TG GK++ + +P AL K I+ P + L ++
Sbjct: 249 QVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLILCPSR 308
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL-YVTPE----LTATPGFMSK 149
+ + + F ++ ++ L G LR ++ + + ATPG +
Sbjct: 309 ELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLD 368
Query: 150 L---KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
L KKI+ + L + +DEA + G F R S L N+ L +AT K
Sbjct: 369 LLNKKKINFK-LCKYLGLDEADRLIDLG--FEDDIR--SVLDNFTNQRQTLLFSATMPKK 423
Query: 207 VQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKANGDTCAIVY 264
+Q+ +L L + V ++ N+ EV + K C L+ +++
Sbjct: 424 IQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLEC--LQKTPPP-VLIF 480
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C + D++ YL + + H + R S + + +K V+VAT G+D
Sbjct: 481 CENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDF 540
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGR 351
+++ V +F++P+ +E + GR GR
Sbjct: 541 PEIQHVINFDMPREIENYIHRIGRTGR 567
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 163 (62.4 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 80/345 (23%), Positives = 142/345 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP--LIALMENQVIGLKE 100
Q++AI L GRD L TG GK+ + +P L L+ +P L AL+ L
Sbjct: 53 QIEAIPLALQGRDIIGLAETGSGKTGAFALPILN----ALLETPQRLFALVLTPTRELAF 108
Query: 101 KGIAGEFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELTATPG----FMSKLKKIHS 155
+ I+ +F + ++ V+ I +DS SL L + ATPG + K +
Sbjct: 109 Q-ISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNL 167
Query: 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 214
R L LV +DEA I + DF K+ + +P D +AT KVQK ++
Sbjct: 168 RALKYLV-MDEADRILNM--DFETEVDKILKV---IPRDRKTFLFSATMTKKVQK--LQR 219
Query: 215 LCLQNPL--VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCD 272
L+NP+ + S + + +L +++C
Sbjct: 220 AALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQ 279
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+ L G + H ++ R L+ + + + +++AT G+D V +V +
Sbjct: 280 RTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVN 339
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLY---YGMDDRRRMEFIL 374
F+IP + + GR R K++ + Y ++ +R+E ++
Sbjct: 340 FDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLI 384
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 163 (62.4 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 76/332 (22%), Positives = 139/332 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q+ I +LSGRD + TG GK++ + +P I+ + E ++ K +G
Sbjct: 64 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPI-----IMFCLE-----QEKRLPFCKREG 113
Query: 103 IAGEFLSSTQTMQVKT-----KIYEDL--DSGKPSLRL------LYVTPELT----ATPG 145
G + + + T + Y L D G P +R + V ++ ATPG
Sbjct: 114 PYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQMRCALCIGGMSVKEQMEVVKLATPG 173
Query: 146 FMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+ L KK+ S + +A+DEA + G F R + S + L +AT
Sbjct: 174 RLMDLLNKKMVSLDICRYLALDEADRMIDMG--FEEDIRTIFSY--FKGQRQTLLFSATM 229
Query: 204 APKVQKDVMESLCLQNPLVL---KSSFNRPNLFYEVRY-KXXXXXXXXXXCSVLKANGDT 259
K+Q +L P+ + ++ ++ EV Y K C L+
Sbjct: 230 PKKIQNFAKSALV--KPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC--LQKTPPP 285
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
+++ ++ D + YL G+ A H G + + R+ ++ + +K V+VAT
Sbjct: 286 -VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVATDVAS 344
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
G+D ++ V ++++P+ +E + GR GR
Sbjct: 345 KGLDFPAIQHVVNYDMPEEIENYVHRIGRTGR 376
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 165 (63.1 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 76/322 (23%), Positives = 136/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALME--NQVI 96
Q LSGRD + TG GK++ Y +PA+ +P + P+++++ + +
Sbjct: 119 QCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPIVSVLPFFSTLF 178
Query: 97 GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLK--KI 153
+ G +F S+ + + + L + L L E+ ATPG + L+ K
Sbjct: 179 SVYRGGTDFKFKCSS--LFWVCFLGQSLKGQR--LEWLSQCVEICIATPGRIDFLESGKT 234
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---D 210
+ R LV +DEA + G F P RK+ + PD L +AT +V++ D
Sbjct: 235 NLRRCTYLV-LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAED 289
Query: 211 VMESLCLQNPLVLKSSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ N L+ S N L +V + + A + I++ +
Sbjct: 290 FLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKR 349
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
CD+L+ + G H + R VL+++ S + +++AT G+D +DV+
Sbjct: 350 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 409
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +++ P S E + GR R
Sbjct: 410 VINYDYPNSSEDYVHRIGRTAR 431
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 165 (63.1 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 87/388 (22%), Positives = 157/388 (40%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q AI +L GRD TG GK+ + +P L K + I + + + ++
Sbjct: 53 QAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQ--- 109
Query: 103 IAGEFLSSTQTMQ-VKT-KIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLL 159
+A E + Q ++ +K +IY S +R L + TPG ++K + +R L
Sbjct: 110 VAAEIKNLGQNIKGLKVLEIYGGA-SILDQMRALKSGAHIVVGTPG---RVKDLITRDRL 165
Query: 160 NLVAIDEAHC--ISSWGHDFRPSY-RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
+L DE H + + + ++ + P+ L + P + K+++E
Sbjct: 166 HL---DECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERF- 221
Query: 217 LQNP-LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCA-IVYCLERTTCDEL 274
L+NP V + N+ E +Y + L +T A IV+ R + L
Sbjct: 222 LRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERL 281
Query: 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334
+ +L A G AA H + R +D ++VAT G+D + V +++
Sbjct: 282 ADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYD 341
Query: 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI-LXXXXXXXXXXFSTRERSSK 393
IP +E++ GR GR K++L + R + I R++ ++
Sbjct: 342 IPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAE 401
Query: 394 KSISDFSQVLDVAGKRFSRVLGNRYWDV 421
++ Q L A K FS + R+ D+
Sbjct: 402 SRLTKLGQEL-AADKEFSSL--ERFADL 426
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 165 (63.1 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 87/388 (22%), Positives = 157/388 (40%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q AI +L GRD TG GK+ + +P L K + I + + + ++
Sbjct: 53 QAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQ--- 109
Query: 103 IAGEFLSSTQTMQ-VKT-KIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRGLL 159
+A E + Q ++ +K +IY S +R L + TPG ++K + +R L
Sbjct: 110 VAAEIKNLGQNIKGLKVLEIYGGA-SILDQMRALKSGAHIVVGTPG---RVKDLITRDRL 165
Query: 160 NLVAIDEAHC--ISSWGHDFRPSY-RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLC 216
+L DE H + + + ++ + P+ L + P + K+++E
Sbjct: 166 HL---DECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERF- 221
Query: 217 LQNP-LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCA-IVYCLERTTCDEL 274
L+NP V + N+ E +Y + L +T A IV+ R + L
Sbjct: 222 LRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERL 281
Query: 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334
+ +L A G AA H + R +D ++VAT G+D + V +++
Sbjct: 282 ADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYD 341
Query: 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI-LXXXXXXXXXXFSTRERSSK 393
IP +E++ GR GR K++L + R + I R++ ++
Sbjct: 342 IPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAE 401
Query: 394 KSISDFSQVLDVAGKRFSRVLGNRYWDV 421
++ Q L A K FS + R+ D+
Sbjct: 402 SRLTKLGQEL-AADKEFSSL--ERFADL 426
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 162 (62.1 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 76/322 (23%), Positives = 137/322 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL---K 99
Q AI +V +GRD TG GK+ + +P L K + S N V GL
Sbjct: 35 QARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLRED-ISSGSKNSKGNFVTGLVLVP 93
Query: 100 EKGIAGEFLSSTQTM------QVKT-KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
+ +A + S ++ ++KT ++ + L L L ATPG + L
Sbjct: 94 TRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVDILVATPGRLLDLIS 153
Query: 153 IHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210
++ L + + +DEA + S G +L++L P L + P+
Sbjct: 154 SNAIKLDKVKTLVLDEADRMLSLGFT-----EELTALLALTPKKKQTLLFSATFPEQVTT 208
Query: 211 VMESLCLQNPLVLK-SSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ + L L NP+ ++ S + L V + +++ A+++ +
Sbjct: 209 LTQEL-LNNPIEIQLQSADASTLVQRV-FTVNKGEKTAVLAHLIQQEQWRQALIFVNAKH 266
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C+ L+ L+ GI+ A +H RS VLD + + +V++AT G+D + + +
Sbjct: 267 HCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPV 326
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +FN+P+S + GR+GR
Sbjct: 327 VINFNLPRSPSDYMHRIGRSGR 348
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 161 (61.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 77/361 (21%), Positives = 153/361 (42%)
Query: 28 KLLRWHFGHAQFRDKQLD--AIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--PGIVLV 83
+LLR + + R + AI ++ G D +G GK+ + I AL K P +
Sbjct: 35 ELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKAC 94
Query: 84 VSPLIALMENQVIGLKEKGIA-GEFLS-STQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+ ++A +++ IA G+F++ T + +D+++ + +++
Sbjct: 95 QALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIV------V 148
Query: 142 ATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
TPG + + +++ + + +DEA + S G ++ + LP + L
Sbjct: 149 GTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFT-----EQIYDIFQLLPQSTQVVL 203
Query: 200 TATAAPKVQKDVME--SLCLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSV 252
+ P+ DV+E + +++P LV K + FY K +
Sbjct: 204 LSATMPQ---DVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLS--DL 258
Query: 253 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312
+ T A+++C R D L+ L+A + +A H + R ++ ++ S +V+
Sbjct: 259 YETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVL 318
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
+AT GID + V LV ++++P + E + GR GR ++ + DD R M
Sbjct: 319 IATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMRE 378
Query: 373 I 373
I
Sbjct: 379 I 379
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 162 (62.1 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 80/345 (23%), Positives = 142/345 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP--LIALMENQVIGLKE 100
Q++AI L GRD L TG GK+ + +P L L+ +P L AL+ L
Sbjct: 52 QVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ----ALLDAPQRLFALVLTPTRELAF 107
Query: 101 KGIAGEFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELTATPG----FMSKLKKIHS 155
+ I+ +F + ++ V + I +DS SL L + ATPG + K +
Sbjct: 108 Q-ISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNL 166
Query: 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 214
R L LV +DEA I + DF K+ + +P D +AT +VQK ++
Sbjct: 167 RALKFLV-MDEADRILNM--DFETEVDKILKV---IPRDRKTFLFSATMTKQVQK--LQR 218
Query: 215 LCLQNPL--VLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCD 272
L+NP+ + S + + +L +++C
Sbjct: 219 AALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQ 278
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+ L G + H ++ R L+ + + + +++AT G+D V +V +
Sbjct: 279 RTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVIN 338
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLY---YGMDDRRRMEFIL 374
F+IP + + GR R KS+ + Y ++ +R+E ++
Sbjct: 339 FDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLI 383
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 164 (62.8 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 68/322 (21%), Positives = 131/322 (40%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94
G D Q I +L+G+D TG GK+ + +PALAK + L+ L +
Sbjct: 34 GFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTR 93
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKI 153
+ ++ F + ++V T +Y G +L + TPG M L++
Sbjct: 94 ELAMQVAEAIESFGKDMKGLRVAT-LYGGQSYGPQFQQLERGAQVVVGTPGRLMDHLRRK 152
Query: 154 HSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL-TATAAPKVQKDV 211
+ L + +DEA + + G + + +++P + L +AT P ++K
Sbjct: 153 SLKLDELRVCVLDEADEMLNMGF-----LEDIQWILDHIPKTAQMCLFSATMPPAIRK-- 205
Query: 212 MESLCLQNPLVLK-SSFNRPNL-FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERT 269
+ + L++P +K ++ + + +K + + I++ R
Sbjct: 206 IANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYDAMIIFVRTRN 265
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+++ L G A + LN R +D S + ++VAT G+D + L
Sbjct: 266 DTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRISL 325
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V ++++P EA+ GR GR
Sbjct: 326 VINYDLPGDNEAYVHRIGRTGR 347
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 163 (62.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 81/344 (23%), Positives = 140/344 (40%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGL 98
Q+ LSG+D TG GK++ + +PA LA+P + P++ ++ L
Sbjct: 140 QIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPIVLVLA-PTREL 198
Query: 99 KEKGIAGEFLS-STQTMQVKTKIYEDLDSGKPSLRLLYVTPE----LTATPGFMSKLKKI 153
E+ I E + ST++ T Y G P +Y + L A PG + L +
Sbjct: 199 AEQ-IRQECIKFSTESKIRNTCAY----GGVPKSGQIYALKQGVHILIACPGRLIDLLEQ 253
Query: 154 HSRGLLNL--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ L+ + + +DEA + G F RK+ + PD L +AT +VQ +
Sbjct: 254 NVTNLMRVTYLVLDEADKMLDMG--FELQIRKI--VDQIRPDRQTLMWSATWPKEVQA-L 308
Query: 212 MESLCLQNP-------LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVY 264
+ LC + P L L + + Y + + K N D IV+
Sbjct: 309 AKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDN-DRI-IVF 366
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
+ D ++ L G+ H + R VL+++ + + +++AT G+D
Sbjct: 367 VETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDI 426
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
K+V+ V +F+ P +E + GR GR S + D R
Sbjct: 427 KNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYR 470
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 163 (62.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 81/344 (23%), Positives = 140/344 (40%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGL 98
Q+ LSG+D TG GK++ + +PA LA+P + P++ ++ L
Sbjct: 140 QIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPIVLVLA-PTREL 198
Query: 99 KEKGIAGEFLS-STQTMQVKTKIYEDLDSGKPSLRLLYVTPE----LTATPGFMSKLKKI 153
E+ I E + ST++ T Y G P +Y + L A PG + L +
Sbjct: 199 AEQ-IRQECIKFSTESKIRNTCAY----GGVPKSGQIYALKQGVHILIACPGRLIDLLEQ 253
Query: 154 HSRGLLNL--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ L+ + + +DEA + G F RK+ + PD L +AT +VQ +
Sbjct: 254 NVTNLMRVTYLVLDEADKMLDMG--FELQIRKI--VDQIRPDRQTLMWSATWPKEVQA-L 308
Query: 212 MESLCLQNP-------LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVY 264
+ LC + P L L + + Y + + K N D IV+
Sbjct: 309 AKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDN-DRI-IVF 366
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
+ D ++ L G+ H + R VL+++ + + +++AT G+D
Sbjct: 367 VETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDI 426
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
K+V+ V +F+ P +E + GR GR S + D R
Sbjct: 427 KNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYR 470
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 69/336 (20%), Positives = 142/336 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGK------SMCYQIPALAKPGIVLVVSPLIALMENQVI 96
Q A+ +L GRD +G GK S+C + ++ L++SP L
Sbjct: 62 QQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEK 121
Query: 97 GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156
++ G+ + ED+ + + ++ TP M K + + +R
Sbjct: 122 TIQAIGLHANI--QAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCD---MIKRRSLRTR 176
Query: 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215
+ L+ +DE+ + S G F+ ++ + YLP D+ + ++AT ++ + M S
Sbjct: 177 AI-KLLILDESDEMLSRG--FKD---QIYDVYRYLPPDLQVCLVSATLPHEILE--MTSK 228
Query: 216 CLQNP---LVLKSSFNRPNL--FYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ P LV + + F+ K C + T A+++C +
Sbjct: 229 FMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTL--CDLYDTLTITQAVIFCNTKRK 286
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D LS + + + ++ H + K R ++++++ S +V++ T + GID + V LV
Sbjct: 287 VDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLV 346
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++++P + E + GR+GR ++ + DD
Sbjct: 347 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 382
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 115 (45.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I++ R+ D L+ L+ ++ A LN R+ +++ + + +++V T G
Sbjct: 250 IIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRG 309
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+D +V V +F++PK E F GR GR ++ G +D
Sbjct: 310 LDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPND 354
Score = 93 (37.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 41/152 (26%), Positives = 71/152 (46%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
AL+ + H G + Q AI A ++G D TG GK++ + IPAL + L
Sbjct: 11 ALMSTIE-HMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR----LSK 65
Query: 85 SPLIALMENQVIGLKE-KGIAGEFLSS----TQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ ++ + +V+ L + +A + S T Q K + ++ +++L PE
Sbjct: 66 NRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPE 125
Query: 140 -LTATPGFMSK-LKK--IHSRGLLNLVAIDEA 167
+ ATPG ++ L + H GL L+ +DEA
Sbjct: 126 FIVATPGRLADHLTQGHFHLNGL-ELLILDEA 156
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 115 (45.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I++ R+ D L+ L+ ++ A LN R+ +++ + + +++V T G
Sbjct: 250 IIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRG 309
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+D +V V +F++PK E F GR GR ++ G +D
Sbjct: 310 LDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPND 354
Score = 93 (37.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 41/152 (26%), Positives = 71/152 (46%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
AL+ + H G + Q AI A ++G D TG GK++ + IPAL + L
Sbjct: 11 ALMSTIE-HMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR----LSK 65
Query: 85 SPLIALMENQVIGLKE-KGIAGEFLSS----TQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ ++ + +V+ L + +A + S T Q K + ++ +++L PE
Sbjct: 66 NRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPE 125
Query: 140 -LTATPGFMSK-LKK--IHSRGLLNLVAIDEA 167
+ ATPG ++ L + H GL L+ +DEA
Sbjct: 126 FIVATPGRLADHLTQGHFHLNGL-ELLILDEA 156
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 169 (64.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 75/340 (22%), Positives = 145/340 (42%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIV 81
++ L+ H G+ + Q AI A++SGRD + TG GK++ + +P + + +
Sbjct: 383 ILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 441
Query: 82 LVVSPLIALME-NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
P+ +M + + L+ +F S T ++V +Y + L +
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKF-SKTLGLRVVC-VYGGTGISEQIAELKRGAEII 499
Query: 141 TATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPG M + +S + NL V +DEA + G F P ++ + N PD
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMRI--VDNVRPDRQ 555
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
+ +AT P+ + + + L P+ ++ R + +V + +L+
Sbjct: 556 TVMFSATF-PRAMEALARRI-LSKPIEVQVG-GRSVVCSDVEQQVIVIEEEKKFLKLLEL 612
Query: 256 NG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
G I++ ++ D L L C + H G++ R S+++D+ + ++
Sbjct: 613 LGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKL 672
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+VAT G+D K + LV +++ P E + +GR GR
Sbjct: 673 LVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGR 712
Score = 45 (20.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 461 PNLLAKYLGE-LTSAVLQKNHFSQIFISSQDMTDGGQYSEFWNRDDE 506
P + AK + E L + K ++ + ++ DGGQ F ++E
Sbjct: 889 PTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEE 935
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 169 (64.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 75/340 (22%), Positives = 145/340 (42%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIV 81
++ L+ H G+ + Q AI A++SGRD + TG GK++ + +P + + +
Sbjct: 383 ILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 441
Query: 82 LVVSPLIALME-NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
P+ +M + + L+ +F S T ++V +Y + L +
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKF-SKTLGLRVVC-VYGGTGISEQIAELKRGAEII 499
Query: 141 TATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPG M + +S + NL V +DEA + G F P ++ + N PD
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMRI--VDNVRPDRQ 555
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
+ +AT P+ + + + L P+ ++ R + +V + +L+
Sbjct: 556 TVMFSATF-PRAMEALARRI-LSKPIEVQVG-GRSVVCSDVEQQVIVIEEEKKFLKLLEL 612
Query: 256 NG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
G I++ ++ D L L C + H G++ R S+++D+ + ++
Sbjct: 613 LGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKL 672
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+VAT G+D K + LV +++ P E + +GR GR
Sbjct: 673 LVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGR 712
Score = 45 (20.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 461 PNLLAKYLGE-LTSAVLQKNHFSQIFISSQDMTDGGQYSEFWNRDDE 506
P + AK + E L + K ++ + ++ DGGQ F ++E
Sbjct: 890 PTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEE 936
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 169 (64.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 75/340 (22%), Positives = 145/340 (42%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIV 81
++ L+ H G+ + Q AI A++SGRD + TG GK++ + +P + + +
Sbjct: 383 ILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 441
Query: 82 LVVSPLIALME-NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
P+ +M + + L+ +F S T ++V +Y + L +
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKF-SKTLGLRVVC-VYGGTGISEQIAELKRGAEII 499
Query: 141 TATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPG M + +S + NL V +DEA + G F P ++ + N PD
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMRI--VDNVRPDRQ 555
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
+ +AT P+ + + + L P+ ++ R + +V + +L+
Sbjct: 556 TVMFSATF-PRAMEALARRI-LSKPIEVQVG-GRSVVCSDVEQQVIVIEEEKKFLKLLEL 612
Query: 256 NG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
G I++ ++ D L L C + H G++ R S+++D+ + ++
Sbjct: 613 LGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKL 672
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+VAT G+D K + LV +++ P E + +GR GR
Sbjct: 673 LVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGR 712
Score = 45 (20.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 461 PNLLAKYLGE-LTSAVLQKNHFSQIFISSQDMTDGGQYSEFWNRDDE 506
P + AK + E L + K ++ + ++ DGGQ F ++E
Sbjct: 890 PTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEE 936
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 169 (64.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 75/340 (22%), Positives = 145/340 (42%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIV 81
++ L+ H G+ + Q AI A++SGRD + TG GK++ + +P + + +
Sbjct: 383 ILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLE 441
Query: 82 LVVSPLIALME-NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
P+ +M + + L+ +F S T ++V +Y + L +
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKF-SKTLGLRVVC-VYGGTGISEQIAELKRGAEII 499
Query: 141 TATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPG M + +S + NL V +DEA + G F P ++ + N PD
Sbjct: 500 VCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMG--FEPQVMRI--VDNVRPDRQ 555
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
+ +AT P+ + + + L P+ ++ R + +V + +L+
Sbjct: 556 TVMFSATF-PRAMEALARRI-LSKPIEVQVG-GRSVVCSDVEQQVIVIEEEKKFLKLLEL 612
Query: 256 NG----DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
G I++ ++ D L L C + H G++ R S+++D+ + ++
Sbjct: 613 LGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKL 672
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+VAT G+D K + LV +++ P E + +GR GR
Sbjct: 673 LVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGR 712
Score = 45 (20.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 461 PNLLAKYLGE-LTSAVLQKNHFSQIFISSQDMTDGGQYSEFWNRDDE 506
P + AK + E L + K ++ + ++ DGGQ F ++E
Sbjct: 890 PTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEE 936
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 167 (63.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 76/329 (23%), Positives = 138/329 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPG-------IVLVVSPLIALM 91
Q AI A++SGRD + TG GK++ + +P L +P I ++++P L
Sbjct: 537 QCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELC 596
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-----LTATPGF 146
IG + + + T I E + K ++ TP L A G
Sbjct: 597 MQ--IGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGR 654
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L+++ V +DEA + G F P ++ + N PD + +AT P+
Sbjct: 655 VTNLRRV------TYVVLDEADRMFDMG--FEPQVMRI--IDNVRPDRQTVMFSATF-PR 703
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG---DTCAIV 263
Q + + L+ P+ + R + EV +L+ G + +I+
Sbjct: 704 -QMEALARRILKKPIEVIVG-GRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 761
Query: 264 YCLERT-TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+++ D L L C + H G++ R S + D+ S + ++++AT G+
Sbjct: 762 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
D KD+ LV ++++P E + GR GR
Sbjct: 822 DVKDLILVVNYDVPNHYEDYVHRCGRTGR 850
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 73/339 (21%), Positives = 139/339 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE 100
Q AI +LSG+D TG GK++ + +P L K P V + ++A + + L+
Sbjct: 32 QEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVA--PTRELALQI 89
Query: 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160
+ L + + V IY D + +L T + ATPG + + + L N
Sbjct: 90 TTEIKKMLVQREDINVLA-IYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSN 148
Query: 161 L--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV--MESLC 216
L + +DEA + +G L + + L + P T + + KD+ +
Sbjct: 149 LSTIVLDEADQMLYFGF--------LYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRY 200
Query: 217 LQNPLVLKSSFNRPNL-FYEVRY-KXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDEL 274
+ P +++ + E R + V+ + A+++C + +L
Sbjct: 201 MDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKL 260
Query: 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334
L G +CA H + R V+ + ++ Q ++AT G+D V V +++
Sbjct: 261 YDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYD 320
Query: 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
IP+ +E++ GR GR ++ + D + +E I
Sbjct: 321 IPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 73/339 (21%), Positives = 139/339 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE 100
Q AI +LSG+D TG GK++ + +P L K P V + ++A + + L+
Sbjct: 32 QEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVA--PTRELALQI 89
Query: 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160
+ L + + V IY D + +L T + ATPG + + + L N
Sbjct: 90 TTEIKKMLVQREDINVLA-IYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSN 148
Query: 161 L--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV--MESLC 216
L + +DEA + +G L + + L + P T + + KD+ +
Sbjct: 149 LSTIVLDEADQMLYFGF--------LYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRY 200
Query: 217 LQNPLVLKSSFNRPNL-FYEVRY-KXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDEL 274
+ P +++ + E R + V+ + A+++C + +L
Sbjct: 201 MDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKL 260
Query: 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334
L G +CA H + R V+ + ++ Q ++AT G+D V V +++
Sbjct: 261 YDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYD 320
Query: 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
IP+ +E++ GR GR ++ + D + +E I
Sbjct: 321 IPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 160 (61.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 80/363 (22%), Positives = 157/363 (43%)
Query: 19 PLHEKEALVK-LLR--WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
P +K L + LLR + +G + Q AI A+L RD +G GK+ + I L
Sbjct: 26 PTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVL 85
Query: 76 AKPGIVLVVSPLIALMENQVIGLK-EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
+ + + L + + ++ +K + L +Q I + G+ +L
Sbjct: 86 QSLDTQVRETQALILSPTRELAVQIQKVVLA--LGDYMNVQCHACI-GGTNLGEDIRKLD 142
Query: 135 YVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
Y ++ TPG F M + + + +R + L+ +DEA + + G F+ +L + YL
Sbjct: 143 YGQHVVSGTPGRVFDMIRRRNLRTRAI-KLLVLDEADEMLNKG--FK---EQLYDIYRYL 196
Query: 192 PD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE-VRYKXXXXXXXXXX 249
P ++ L+AT ++ + M S + +P+ + R L E ++
Sbjct: 197 PPGAQVVLLSATLPHEILE--MTSKFMTDPI--RILVKRDELTLEGIKQFFVAVDREEWK 252
Query: 250 CSVLKANGDTC----AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
L DT A+++C R D L+ + + ++ H + K R V+ ++
Sbjct: 253 FDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
+ +V+++T + G+D V LV ++++P + E + GR+GR ++ + D
Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372
Query: 366 DRR 368
D R
Sbjct: 373 DVR 375
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 162 (62.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 76/318 (23%), Positives = 139/318 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q ++I L+G D G GK+ + IP L K V + L+ + + L+
Sbjct: 181 QEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQ 240
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLN- 160
+ E ++ ++++ + S + + LY L TPG + L K L +
Sbjct: 241 VCKEL---SKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDC 297
Query: 161 -LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDVMESLCLQ 218
++ +DEA + S +F+PS + L +LP+ IL +AT P K + L+
Sbjct: 298 AMLVMDEADKLLSV--EFQPS---IEELIQFLPESRQILMFSATF-PVTVKSFKDRY-LK 350
Query: 219 NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXC-----SVLKANGDTCAIVYCLERTTCDE 273
P ++ + ++ L +Y C S L+ N +I++C +
Sbjct: 351 KPYII-NLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQ---SIIFCNSVNRVEL 406
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
L+ ++ G SC HA + R+ V D+ + + +V T F GID + V +V +F
Sbjct: 407 LAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 466
Query: 334 NIPKSMEAFYQESGRAGR 351
+ P++ E++ GR+GR
Sbjct: 467 DFPRTSESYLHRVGRSGR 484
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 161 (61.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 85/351 (24%), Positives = 149/351 (42%)
Query: 50 VLSGRDCFCLMPTGGGKSMCYQIPALA----------------KPG-IVLVVSPLIALME 92
+LSG+DC + TG GK++ + +PAL KP VLV+SP L +
Sbjct: 118 LLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQ 177
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
Q+ G +K + S + E +++ + + ++ ATPG ++ L
Sbjct: 178 -QIEGEVKKYSYNGYKSVC--LYGGGSRPEQVEACRGGVEIVI------ATPGRLTDLSN 228
Query: 153 --IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK-VQK 209
+ S + V +DEA + G F + R++ L PD ++ALT+ P+ V+K
Sbjct: 229 DGVISLASVTYVVLDEADRMLDMG--FEVAIRRI--LFEIRPD-RLVALTSATWPEGVRK 283
Query: 210 --D--VMESLCLQNPLVLKSSFNRPNLFYE-VRYKXXXXXXXXXXCSVLKANGDTCA-IV 263
D E++ N + +S F+E V + + A+G I+
Sbjct: 284 LTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMII 343
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
+ + D LS+ GI+ H G + R L+ S Q++VAT GID
Sbjct: 344 FVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGID 403
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
D+ V +++ P +E + GR GR +++ + +DR E ++
Sbjct: 404 VPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLI 454
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 159 (61.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 82/362 (22%), Positives = 153/362 (42%)
Query: 9 QSTSQTQKNKPLH---EKEALVKLLRWHFGHAQFRDK---QLDAIQAVLSGRDCFCLMPT 62
+S QT +K ++ + E LLR FG+ F + Q AI ++ G D +
Sbjct: 10 ESQIQTNYDKVVYKFDDMELDENLLRGVFGYG-FEEPSAIQQRAIMPIIEGHDVLAQAQS 68
Query: 63 GGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
G GK+ + I AL + + + L + + L+ + + ++ M +K
Sbjct: 69 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVV---MALAFHMDIKVHACI 125
Query: 123 DLDSGKPSLRLLYVTPELTATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
S L + TPG F + ++ + + +DEA + S G F+
Sbjct: 126 GGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQ 183
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVME--SLCLQNP---LVLKSSFNRPNL--F 233
++ +L P ++ L+AT + DV+E + ++NP LV K + F
Sbjct: 184 IYQIFTLLP--PTTQVVLLSAT----MPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQF 237
Query: 234 Y----EVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289
Y E YK SV T A+++C R +EL+ L + +A +
Sbjct: 238 YVNVEEEEYKYECLTDLYDSISV------TQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 291
Query: 290 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349
+ L + R +++ ++ S +++++T GID + V LV ++++P + E + GR
Sbjct: 292 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 351
Query: 350 GR 351
GR
Sbjct: 352 GR 353
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 159 (61.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 82/362 (22%), Positives = 153/362 (42%)
Query: 9 QSTSQTQKNKPLH---EKEALVKLLRWHFGHAQFRDK---QLDAIQAVLSGRDCFCLMPT 62
+S QT +K ++ + E LLR FG+ F + Q AI ++ G D +
Sbjct: 10 ESQIQTNYDKVVYKFDDMELDENLLRGVFGYG-FEEPSAIQQRAIMPIIEGHDVLAQAQS 68
Query: 63 GGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
G GK+ + I AL + + + L + + L+ + + ++ M +K
Sbjct: 69 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVV---MALAFHMDIKVHACI 125
Query: 123 DLDSGKPSLRLLYVTPELTATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
S L + TPG F + ++ + + +DEA + S G F+
Sbjct: 126 GGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQ 183
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVME--SLCLQNP---LVLKSSFNRPNL--F 233
++ +L P ++ L+AT + DV+E + ++NP LV K + F
Sbjct: 184 IYQIFTLLP--PTTQVVLLSAT----MPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQF 237
Query: 234 Y----EVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289
Y E YK SV T A+++C R +EL+ L + +A +
Sbjct: 238 YVNVEEEEYKYECLTDLYDSISV------TQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 291
Query: 290 AGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349
+ L + R +++ ++ S +++++T GID + V LV ++++P + E + GR
Sbjct: 292 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 351
Query: 350 GR 351
GR
Sbjct: 352 GR 353
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 165 (63.1 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 73/323 (22%), Positives = 136/323 (42%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALME-NQVIG 97
Q AI A++SGRD + TG GK++ + +P L + + PL +M + +
Sbjct: 384 QAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELA 443
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157
L+ +F S + ++V +Y + L + TPG M + ++
Sbjct: 444 LQITKECKKF-SKSLALRVVC-VYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGR 501
Query: 158 LLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ NL V IDEA + G F P ++ + N PD + +AT P+ + +
Sbjct: 502 VTNLRRVTYVVIDEADRMFDMG--FEPQVMRI--VDNVRPDRQTVMFSATF-PRTMEALA 556
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDT----CAIVYCLER 268
+ L P+ ++ R + +V +L+ G I++ ++
Sbjct: 557 RRI-LSKPVEVQVG-GRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQ 614
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D L L C + H G++ R S+++D+ + +++VAT G+D K +
Sbjct: 615 EHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLI 674
Query: 329 LVCHFNIPKSMEAFYQESGRAGR 351
LV +++ P E + +GR GR
Sbjct: 675 LVVNYSCPNHYEDYVHRAGRTGR 697
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 77/340 (22%), Positives = 150/340 (44%)
Query: 29 LLR--WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGI- 80
LLR + +G Q AI ++SG+D +G GK+ + I L K +
Sbjct: 34 LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQ 93
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
L++SP L IG K + G++++ K +D D K + +
Sbjct: 94 ALILSPTRELASQ--IGQVVKNL-GDYMNVNAFAITGGKTLKD-DLKKMQK---HGCQAV 146
Query: 141 TATPG-FMSKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPI 196
+ TPG + +KK + +R + LV +DEA + S F+ +++ + LP + +
Sbjct: 147 SGTPGRVLDMIKKQMLQTRNVQMLV-LDEADELLSETLGFK---QQIYDIFAKLPKNCQV 202
Query: 197 LALTATAAPKVQKDVMESL--CLQNP---LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 251
+ ++AT + KD++E + +P LV + + + V C
Sbjct: 203 VVVSAT----MNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCD 258
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+ + T +++C + D LS L + + H + + R V++D+ + +V
Sbjct: 259 IYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRV 318
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+++T + GID + V LV ++++P+ +E + GR+GR
Sbjct: 319 LISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGR 358
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 79/363 (21%), Positives = 157/363 (43%)
Query: 19 PLHEKEALVK-LLR--WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
P +K L + LLR + +G + Q A+ A+L RD +G GK+ + I L
Sbjct: 26 PTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVL 85
Query: 76 AKPGIVLVVSPLIALMENQVIGLK-EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
+ + + L + + ++ +K + L +Q I + G+ +L
Sbjct: 86 QSLDTQVRETQALILSPTRELAVQIQKVVLA--LGDYMNVQCHACI-GGTNLGEDIRKLD 142
Query: 135 YVTPELTATPG--F-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
Y ++ TPG F M + + + +R + L+ +DEA + + G F+ +L + YL
Sbjct: 143 YGQHVVSGTPGRVFDMIRRRNLRTRAI-KLLVLDEADEMLNKG--FK---EQLYDIYRYL 196
Query: 192 PD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE-VRYKXXXXXXXXXX 249
P ++ L+AT ++ + M S + +P+ + R L E ++
Sbjct: 197 PPGAQVVLLSATLPHEILE--MTSKFMTDPI--RILVKRDELTLEGIKQFFVAVDREEWK 252
Query: 250 CSVLKANGDTC----AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
L DT A+++C R D L+ + + ++ H + K R V+ ++
Sbjct: 253 FDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFR 312
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
+ +V+++T + G+D V LV ++++P + E + GR+GR ++ + D
Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372
Query: 366 DRR 368
D R
Sbjct: 373 DVR 375
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 162 (62.1 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 86/367 (23%), Positives = 142/367 (38%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+VK L+ G + Q ++ + GRD TG GK++ + IP + K ++ +
Sbjct: 127 IVKALKGR-GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK---IIKFN 182
Query: 86 PLIALMEN-QVIGL---KE--KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+N Q + L +E + + EF S ++ +Y G+ L Y
Sbjct: 183 AKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC-LYGGTPIGQQMRELNYGIDV 241
Query: 140 LTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWG--HDFRPSYRKLSSLRNYLP 192
TPG + L K RG LNL V +DEA + G D +KL + R +
Sbjct: 242 AVGTPGRIIDLMK---RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSM- 297
Query: 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV 252
+AT ++ + L NPL + + + S+
Sbjct: 298 -----MFSATMPSWIRS--LTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASI 350
Query: 253 L------KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
+ G C IV+ + D L A+ A C A H ++ R L +
Sbjct: 351 IGPLVKEHGKGGKC-IVFTQTKRDADRL-AFGLAKSYKCEALHGDISQAQRERTLAGFRD 408
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
++VAT G+D +V LV H+ +P + E F +GR GR ++L +G D
Sbjct: 409 GNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQ 468
Query: 367 RRRMEFI 373
R ++ I
Sbjct: 469 TRAVKMI 475
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 73/338 (21%), Positives = 140/338 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI-VLVVSPLIALMENQVIGLKEK 101
Q AI+ ++ GRD +G GK+ + + L I V LI ++ G +K
Sbjct: 60 QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQK 119
Query: 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG--F-MSKLKKIHSRGL 158
+ L +Q I + G+ +L Y + TPG F M + + + +R +
Sbjct: 120 VLLA--LGDYMNVQCHACI-GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 176
Query: 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP--------KVQKD 210
LV +DEA + + G F+ ++ + YLP + L + P K D
Sbjct: 177 KMLV-LDEADEMLNKG--FK---EQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTD 230
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLERTT 270
+ L ++ L L+ F V + C + T A+++C +
Sbjct: 231 PIRILVKRDELTLEGI---KQFFVAVEREEWKFDTL---CDLYDTLTITQAVIFCNTKRK 284
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D L+ + + ++ H + K R S++ ++ S +V+++T + G+D V L+
Sbjct: 285 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLI 344
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
++++P + E + GR+GR ++ + DD R
Sbjct: 345 INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 382
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 162 (62.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 77/341 (22%), Positives = 145/341 (42%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPL-IALMENQVIGLKEKGIAG 105
+SG + + TG GK++ Y +PA+ + + P+ + L + + + + +A
Sbjct: 316 MSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVAT 375
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNLV 162
EF SS+ T ++ G +R L E+ ATPG + S L +
Sbjct: 376 EFGSSSYVRN--TCVFGGAPKGG-QMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYL 432
Query: 163 AIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLC---LQ 218
+DEA + G F P RK+ S +R PD L +AT PK K + E +Q
Sbjct: 433 VLDEADRMLDMG--FEPQIRKIVSQIR---PDRQTLMWSATW-PKEVKQLAEDFLGNYIQ 486
Query: 219 ---NPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCA--IVYCLERTTCDE 273
L L ++ N + +V + S + ++ I++ + D
Sbjct: 487 INIGSLELSANHNIRQVV-DVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDN 545
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
L ++ + G+ C A H + R VL ++ S + ++VAT G+D ++ V +F
Sbjct: 546 LVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINF 605
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
+ P++ E + GR GR S ++ ++ ++ + ++
Sbjct: 606 DYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 646
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 148 (57.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 53/221 (23%), Positives = 96/221 (43%)
Query: 140 LTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI- 196
L ATPG + + + GL N + +DEA + G F P R++ ++ +P +
Sbjct: 352 LVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMG--FEPQIRRIVE-QDTMPPKGLR 408
Query: 197 --LALTATAAPKVQ---KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCS 251
+ +AT ++Q +D +E V + N+ +V +
Sbjct: 409 QTMMFSATFPKEIQILARDFLEDYIFL--AVGRVGSTSENITQKVVW-VEENDKRSFLLD 465
Query: 252 VLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
+L A G D+ +V+ + D L +L G +C + H + + R L + S R
Sbjct: 466 LLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCP 525
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
++VAT G+D +V+ V +F++P +E + GR GR
Sbjct: 526 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 566
Score = 60 (26.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIG 97
Q AI + S RD TG GK+ + +P L++ PG L + A EN G
Sbjct: 235 QKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSA-QENGKYG 293
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYED 123
+++ L+ T+ + ++ IY++
Sbjct: 294 RRKQYPISLVLAPTRELALQ--IYDE 317
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 161 (61.7 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 77/348 (22%), Positives = 140/348 (40%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91
G+ + Q +I VL+GRD TG GK+ + +P LA + GI S L
Sbjct: 280 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGIT--ASRFKELQ 337
Query: 92 ENQ-VIGLKEKGIAGEFLSSTQTMQVKT-----KIYEDLDSGKPSLRLLYVTPELTATPG 145
E + +I + + + + T IY G +++ L ATPG
Sbjct: 338 EPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCATPG 397
Query: 146 FMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP---ILALT 200
+ + GL + + +DEA + G F P +KL S +P L +
Sbjct: 398 RLMDIIGKEKIGLKQVKYLVLDEADRMLDMG--FGPEMKKLISCPG-MPSKEQRQTLLFS 454
Query: 201 ATAAPKVQK---DVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANG 257
AT ++Q+ D ++S L + R + + +L+ G
Sbjct: 455 ATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRD--VQQTILQVGQYSKREKLVEILRNIG 512
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
D +V+ + D ++ +L IS + H + R L D+ + V+VAT
Sbjct: 513 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 572
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
G+D ++V+ V +F++P +++ + GR GR +++ ++ D
Sbjct: 573 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTD 620
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 86/343 (25%), Positives = 141/343 (41%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
EAL+K +R G+ Q AI AV+SGRD TG GK+ + +P L + L
Sbjct: 15 EALLKAVR-DKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR----LS 69
Query: 84 VSPLIALMENQVIGL---KEKGIAGEFLSSTQTMQVKTKIYEDLDSG----KPSL-RLLY 135
S + N V L + +A + S + ++ + G P + RL
Sbjct: 70 SSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQ 129
Query: 136 VTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP- 192
L ATPG + L ++ L + +DEA + G R + L LP
Sbjct: 130 GVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGF-----IRDIKKLMTALPK 184
Query: 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV 252
D L +AT +P+++ + + NPL + S + N E + +V
Sbjct: 185 DRQNLLFSATFSPEIR--ALAKGMVNNPLEI--SVDAENSTAEKVTQWLTAVDKKRKPAV 240
Query: 253 L----KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
L K N +V+ + ++L+ +L A G++ AA H + AR+ L +
Sbjct: 241 LTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGS 300
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+++VAT GID + V +F++P E + GR R
Sbjct: 301 VKILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTAR 343
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 81/326 (24%), Positives = 142/326 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--AKP------GIVLVVSPLIALMENQ 94
Q ++I L+GRD G GK+ + IP L KP ++LV + +AL +Q
Sbjct: 57 QEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQ 116
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KK 152
V+ K + + + +T T + +D+ +RL L TPG + L +K
Sbjct: 117 VVRTLGKHVGTQCMVTTGG----TSLRDDI------VRLHDPVHILVGTPGRVLDLAARK 166
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ L +DEA + S +F+ ++ L + P+ L +AT P K M
Sbjct: 167 VVDLSECPLFVMDEADKMLS--REFKGIIEQI--LEFFPPNRQALLFSATF-PLAVKSFM 221
Query: 213 ES-------LCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYC 265
+ + L + L LK ++ F E + K S L+ N +I++C
Sbjct: 222 DKHLTKPYEINLMDELTLKG-ISQFYAFVEEKQKLHCLNTLF---SKLQINQ---SIIFC 274
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ L+ ++ G SC HA + +AR+ V ++ + + +V + GID +
Sbjct: 275 NSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQ 334
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGR 351
V +V +F+ PK+ E + GR+GR
Sbjct: 335 AVNVVINFDFPKTAETYLHRIGRSGR 360
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 81/326 (24%), Positives = 142/326 (43%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--AKP------GIVLVVSPLIALMENQ 94
Q ++I L+GRD G GK+ + IP L KP ++LV + +AL +Q
Sbjct: 57 QEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQ 116
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KK 152
V+ K + + + +T T + +D+ +RL L TPG + L +K
Sbjct: 117 VVRTLGKHVGTQCMVTTGG----TSLRDDI------VRLHDPVHILVGTPGRVLDLAARK 166
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ L +DEA + S +F+ ++ L + P+ L +AT P K M
Sbjct: 167 VVDLSECPLFVMDEADKMLS--REFKGIIEQI--LEFFPPNRQALLFSATF-PLAVKSFM 221
Query: 213 ES-------LCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKANGDTCAIVYC 265
+ + L + L LK ++ F E + K S L+ N +I++C
Sbjct: 222 DKHLTKPYEINLMDELTLKG-ISQFYAFVEEKQKLHCLNTLF---SKLQINQ---SIIFC 274
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ L+ ++ G SC HA + +AR+ V ++ + + +V + GID +
Sbjct: 275 NSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQ 334
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGR 351
V +V +F+ PK+ E + GR+GR
Sbjct: 335 AVNVVINFDFPKTAETYLHRIGRSGR 360
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 160 (61.4 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 75/322 (23%), Positives = 134/322 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ-----VIG 97
Q A VL G D + TG GK++CY +P I LV+ P + N+ +
Sbjct: 269 QSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGF----IHLVLQPSLKGQRNRPGMLVLTP 324
Query: 98 LKEKG--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155
+E + GE + +Y + + L + ATPG ++ L+ +
Sbjct: 325 TRELALQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNF 384
Query: 156 RGLLNL--VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L N+ + +DEA + G F P K+ L + PD + +AT V + + +
Sbjct: 385 VNLKNITYLVLDEADKMLDMG--FEPQIMKI--LLDVRPDRQTVMTSATWPHSVHR-LAQ 439
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSV---LKANGDTC-AIVYCLERT 269
S L+ P+++ V+ + L++ T IV+ +
Sbjct: 440 SY-LKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKA 498
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
D LS+ L G IS + H + R L+++ + + ++++AT G+D DV
Sbjct: 499 VADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTH 558
Query: 330 VCHFNIPKSMEAFYQESGRAGR 351
V +F+ P+++E + GR GR
Sbjct: 559 VYNFDFPRNIEEYVHRIGRTGR 580
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 161 (61.7 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 80/371 (21%), Positives = 155/371 (41%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH L+K ++ G +Q Q AI L+G+D TG GK+ + +P L +
Sbjct: 195 LHLSRPLLKAVQ-KLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER-- 251
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV--- 136
++ S A+ +I L + +A + S + + + I L G S + V
Sbjct: 252 LLFRDSEYRAI--RVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELR 309
Query: 137 -TPELT-ATPG-FMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+P++ ATPG + L H GL L ++ +DEA + G F+ K+ + +
Sbjct: 310 KSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMG--FKDEINKI--VESCP 365
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL------VLKSSFNRPNLFYEVR--YKXXXX 243
+ + +AT +V+ + L LQ P+ +++ + F +++ +
Sbjct: 366 TNRQTMLFSATLNDEVK--TLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRP 423
Query: 244 XXXXXXCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303
C+ + G T I++C + L + A H L+ + R L
Sbjct: 424 AILLSLCTRVFNQGGT--IIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQ 481
Query: 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363
+ + ++A+ G+D V+ V ++N+P +M + GR R + KS +
Sbjct: 482 FRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFIT 541
Query: 364 MDDRRRMEFIL 374
+DR+ ++ I+
Sbjct: 542 DNDRKLLKDIV 552
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 161 (61.7 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 76/321 (23%), Positives = 129/321 (40%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI-ALMENQVIG 97
Q A L GRD L TG GK++ + +P++ A+P + P++ L + +
Sbjct: 411 QSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVLAPTRELA 470
Query: 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157
L+ + +F ++Q T +Y L + ATPG + + +
Sbjct: 471 LQIQEETNKFGGTSQISN--TCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTN 528
Query: 158 L--LNLVAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMES 214
L + + +DEA + G F P RK+ S +R PD L +AT +VQ +
Sbjct: 529 LRRVTYLVLDEADRMLDMG--FEPQIRKIISQIR---PDRQTLMFSATWPKEVQALAHDF 583
Query: 215 LCLQNPLVLKSSFNRPNLFYEVRYKXXX---XXXXXXXCSVLKANG-DTCAIVYCLERTT 270
L + + S+ N + VR S L + G D IV+ R
Sbjct: 584 LTDHIQVHIGSTEITAN--HNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETRKG 641
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
D+L L G H + R VL + + +++AT G+D KD++ V
Sbjct: 642 VDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYV 701
Query: 331 CHFNIPKSMEAFYQESGRAGR 351
+++ P ++E + GR R
Sbjct: 702 VNYDFPNTIEVYIHRIGRTAR 722
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 156 (60.0 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 69/336 (20%), Positives = 140/336 (41%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L++ + + +G+ Q AI + GRD +G GK+ + I L + +
Sbjct: 29 KEDLLRGI-YAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSV 87
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
+ + L + + ++ + + L +Q I G +L Y ++
Sbjct: 88 RDTQALILSPTRELAVQIQNVVLA-LGDHMNVQCHACI-GGTSVGNDIKKLDYGQHVVSG 145
Query: 143 TPGFMSKL---KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILA 198
TPG ++ + + + +R + L+ +DEA + + G F+ ++ + YLP ++
Sbjct: 146 TPGRVTDMIRRRNLRTRNVKMLI-LDEADELLNQG--FK---EQIYDIYRYLPPGTQVVV 199
Query: 199 LTATAAPKVQKDVMESLCLQNP---LVLKSSFNRPNLFYEVRYKXXXXXXXXXXCSVLKA 255
++AT V + M + NP LV + L C +
Sbjct: 200 VSATLPQDVLE--MTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDT 257
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
T A+++C R D L+ + + + H + K R +++ D+ +V++ T
Sbjct: 258 LTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICT 317
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+ GID + V LV ++++P + E + GR+GR
Sbjct: 318 DIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGR 353
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 157 (60.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 79/324 (24%), Positives = 134/324 (41%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGIV--LVVSPLIALMENQV 95
Q AI AV++GRD L TG GK+ + +P L + G V LV++P L E
Sbjct: 28 QAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQGERGRVRALVIAPTRELAEQ-- 85
Query: 96 IGLKEKGIAGEFLS-STQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKI 153
I F++ QT +Y + P ++ L E+ A PG + L I
Sbjct: 86 -------INDSFVTLGRQTRLRSVTVYGGVGVN-PQVQKLKAGAEVVVACPGRL--LDHI 135
Query: 154 HSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
++G ++L + +DEA + G F P R++ L++ P L +AT +
Sbjct: 136 -AQGTIDLSRLEVLVLDEADQMFDMG--FLPDIRRV--LKHLPPRRQTLLFSATMPIDI- 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFY-EVRYKXXXXXXXXXXCSVLKANGDTCAIVYCLE 267
+ + + + L +P+ ++ P + Y +L+ +++
Sbjct: 190 RTLAQDI-LVDPVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTESVLIFTRT 248
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ L L G A+ L+ R + LD + Q++VAT GID V
Sbjct: 249 KHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQV 308
Query: 328 RLVCHFNIPKSMEAFYQESGRAGR 351
V +++IP + EA+ GR GR
Sbjct: 309 SHVINYDIPDTAEAYIHRIGRTGR 332
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 160 (61.4 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 74/346 (21%), Positives = 136/346 (39%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALM 91
G+ + Q +I +L+GRD TG GK+ + +P LA GI S L
Sbjct: 305 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGIT--ASRFKELQ 362
Query: 92 ENQ-VIGLKEKGIAGEFLSSTQTMQVKT-----KIYEDLDSGKPSLRLLYVTPELTATPG 145
E + +I + + + + T IY G +++ L ATPG
Sbjct: 363 EPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPG 422
Query: 146 FMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP---ILALT 200
+ + GL + + +DEA + G F P +KL S +P L +
Sbjct: 423 RLMDIIGKEKIGLKQIKYLVLDEADRMLDMG--FGPEMKKLISCPG-MPSKEQRQTLMFS 479
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKXXXXXXXXXXCSVLKANGDT 259
AT ++Q+ E L V + + +L+ GD
Sbjct: 480 ATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKREKLLEILRNIGDE 539
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
+V+ + D ++ +L IS + H + R L D+ + V+VAT
Sbjct: 540 RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAA 599
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
G+D ++V+ V +F++P +++ + GR GR +++ ++ ++
Sbjct: 600 RGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLE 645
WARNING: HSPs involving 316 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 529 509 0.00087 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 566
No. of states in DFA: 625 (66 KB)
Total size of DFA: 309 KB (2159 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.25u 0.09s 38.34t Elapsed: 00:00:02
Total cpu time: 38.33u 0.10s 38.43t Elapsed: 00:00:02
Start: Tue May 21 05:19:19 2013 End: Tue May 21 05:19:21 2013
WARNINGS ISSUED: 2